Citrus Sinensis ID: 015441
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 406 | 2.2.26 [Sep-21-2011] | |||||||
| Q93Z70 | 401 | Probable N-acetyl-gamma-g | yes | no | 0.982 | 0.995 | 0.770 | 0.0 | |
| Q6AV34 | 415 | Probable N-acetyl-gamma-g | yes | no | 0.967 | 0.946 | 0.726 | 1e-166 | |
| Q2RRM4 | 352 | N-acetyl-gamma-glutamyl-p | yes | no | 0.849 | 0.980 | 0.582 | 1e-114 | |
| B6JHG4 | 352 | N-acetyl-gamma-glutamyl-p | yes | no | 0.832 | 0.960 | 0.554 | 1e-107 | |
| Q9LA02 | 342 | N-acetyl-gamma-glutamyl-p | yes | no | 0.832 | 0.988 | 0.507 | 5e-99 | |
| Q5LS92 | 342 | N-acetyl-gamma-glutamyl-p | yes | no | 0.832 | 0.988 | 0.521 | 1e-97 | |
| Q1GHL0 | 342 | N-acetyl-gamma-glutamyl-p | yes | no | 0.830 | 0.985 | 0.511 | 8e-97 | |
| B9KSY0 | 342 | N-acetyl-gamma-glutamyl-p | yes | no | 0.830 | 0.985 | 0.511 | 3e-95 | |
| Q3J277 | 342 | N-acetyl-gamma-glutamyl-p | yes | no | 0.830 | 0.985 | 0.508 | 5e-95 | |
| A4WQY7 | 342 | N-acetyl-gamma-glutamyl-p | yes | no | 0.830 | 0.985 | 0.508 | 3e-94 |
| >sp|Q93Z70|ARGC_ARATH Probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=At2g19940 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 635 bits (1637), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/405 (77%), Positives = 350/405 (86%), Gaps = 6/405 (1%)
Query: 2 SAATFSSLCFSRGCFWKDEAKNSPRVMKGSGKVKISSIRGSATLPTKSLQVEDGKTQKSE 61
+A+ FSS+ +GC++K E K RV K +++ A+ + S +V + K E
Sbjct: 3 TASAFSSI---QGCWFKGERKI--RVADKRAK-RLTLGSHVASPSSMSFRVSASSSVKPE 56
Query: 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVA 121
K +RIGLLGASGYTGAEIVRLLANHP+F + LMTADRKAGQS+ SVFPHL +Q LPT+V+
Sbjct: 57 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVS 116
Query: 122 VKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAP 181
VKDADFS VDAVFCCLPHGTTQEIIK LP +LKIVDLSADFRLR+++EYEEWYGQPH A
Sbjct: 117 VKDADFSTVDAVFCCLPHGTTQEIIKELPTALKIVDLSADFRLRNIAEYEEWYGQPHKAV 176
Query: 182 DLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGV 241
+LQKE VYGLTEI REDIK ARLVANPGCYPT+IQLPLVPL++ANLI++ NIIIDAKSGV
Sbjct: 177 ELQKEVVYGLTEILREDIKKARLVANPGCYPTTIQLPLVPLLKANLIKHENIIIDAKSGV 236
Query: 242 SGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMIRG 301
SGAGRGAKEANLYSEIAEGI SYGVTRHRHVPEIEQGL+ A SKVTVSFTPHLMPMIRG
Sbjct: 237 SGAGRGAKEANLYSEIAEGISSYGVTRHRHVPEIEQGLSDVAQSKVTVSFTPHLMPMIRG 296
Query: 302 MQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDR 361
MQSTIYVEMAPGV EDL+QQLK SYE EEFVK+L++GVVPRTHNVRGSNYC M+VFPDR
Sbjct: 297 MQSTIYVEMAPGVRTEDLHQQLKTSYEDEEFVKVLDEGVVPRTHNVRGSNYCHMSVFPDR 356
Query: 362 IPGRAIIISVIDNLVKGASGQALQNLNIMLGFPENTGLLYQPLFP 406
IPGRAIIISVIDNLVKGASGQALQNLNIMLG+PE TGLL+QPLFP
Sbjct: 357 IPGRAIIISVIDNLVKGASGQALQNLNIMLGYPETTGLLHQPLFP 401
|
Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 2EC: .EC: 1EC: .EC: 3EC: 8 |
| >sp|Q6AV34|ARGC_ORYSJ Probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0617900 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 586 bits (1511), Expect = e-166, Method: Compositional matrix adjust.
Identities = 287/395 (72%), Positives = 329/395 (83%), Gaps = 2/395 (0%)
Query: 14 GCFWKDEAKNSPRVMKGSGKVKISSIRGSATLPTKSLQVEDGKTQ--KSEKQVRIGLLGA 71
G F + + ++K + KV SS+R A++ + + KT KS ++VRI +LGA
Sbjct: 21 GVFGSNLKQCGGFMLKTTPKVGSSSVRVRASVASSPQKQHSPKTSGVKSGEEVRIAVLGA 80
Query: 72 SGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVD 131
SGYTGAEIVRLLANHP F IK+MTADRKAG+ GSVFPHLI+QDLP +VAVKDADFSNVD
Sbjct: 81 SGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVD 140
Query: 132 AVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGL 191
AVFCCLPHGTTQEIIKGLP+ LKIVDLSADFRLRD++EY EWYG H AP+LQ+EAVYGL
Sbjct: 141 AVFCCLPHGTTQEIIKGLPQELKIVDLSADFRLRDINEYAEWYGHSHRAPELQQEAVYGL 200
Query: 192 TEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEA 251
TE+ R +I+NARLVANPGCYPTSIQLPLVPLI+A LI+ NIIIDAKSGVSGAGRGAKEA
Sbjct: 201 TEVLRNEIRNARLVANPGCYPTSIQLPLVPLIKAKLIKVSNIIIDAKSGVSGAGRGAKEA 260
Query: 252 NLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMA 311
NLY+EIAEGI++YG+ HRHVPEIEQGL+ A SKVT+SFTP+L+ M RGMQST++VEMA
Sbjct: 261 NLYTEIAEGIHAYGIKGHRHVPEIEQGLSEAAESKVTISFTPNLICMKRGMQSTMFVEMA 320
Query: 312 PGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIPGRAIIISV 371
PGVT DLYQ LK +YE EEFVKLL VP T +V GSNYC MNVF DRIPGRAIIISV
Sbjct: 321 PGVTANDLYQHLKSTYEGEEFVKLLNGSSVPHTRHVVGSNYCFMNVFEDRIPGRAIIISV 380
Query: 372 IDNLVKGASGQALQNLNIMLGFPENTGLLYQPLFP 406
IDNLVKGASGQA+QNLN+M+G PENTGL YQPLFP
Sbjct: 381 IDNLVKGASGQAVQNLNLMMGLPENTGLQYQPLFP 415
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 EC: 8 |
| >sp|Q2RRM4|ARGC_RHORT N-acetyl-gamma-glutamyl-phosphate reductase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=argC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 411 bits (1056), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/350 (58%), Positives = 249/350 (71%), Gaps = 5/350 (1%)
Query: 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVA 121
++V + +LGASGYTGAE+VRLLA HP + +TA+RKAGQ+ SVFPHL DLP +
Sbjct: 3 ERVNVAILGASGYTGAELVRLLARHPRVTLAALTANRKAGQAFASVFPHLGGLDLPVLST 62
Query: 122 VKDADFSNVDAVFCCLPHGTTQEIIKGLPKS-----LKIVDLSADFRLRDVSEYEEWYGQ 176
++ D+S +D VFC LPHGTTQ II L L+I DLSADFRL D Y+ WYG
Sbjct: 63 IEAVDWSAIDFVFCALPHGTTQTIIGDLLNGPHGGRLRIADLSADFRLADPMVYQTWYGH 122
Query: 177 PHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIID 236
H A +LQKEAVYGLTEI+R I ARLVA PGCYPTS QLPL+PL++A LI IIID
Sbjct: 123 AHEAVELQKEAVYGLTEINRAAIATARLVAVPGCYPTSAQLPLIPLLRAGLIDPDAIIID 182
Query: 237 AKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLM 296
AKSG SGAGR AKE +L+ E++EGI++YGV HRH PEIEQGL+ V V+FTPHLM
Sbjct: 183 AKSGASGAGRDAKEGSLHCEVSEGIHAYGVGTHRHGPEIEQGLSLAVGRPVAVTFTPHLM 242
Query: 297 PMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMN 356
PM RG+ STIY+ G L Q L +Y E FV+++ +GV P T +VRGSN+ L+
Sbjct: 243 PMNRGILSTIYLRATAGNDATTLRQALSAAYADEAFVRVVPEGVSPHTRHVRGSNFVLIG 302
Query: 357 VFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMLGFPENTGLLYQPLFP 406
V DR+PGR I+ V DNLVKGASGQA+Q++N+MLGFPE GL QPLFP
Sbjct: 303 VHADRVPGRVIVTCVEDNLVKGASGQAIQDMNVMLGFPETLGLDQQPLFP 352
|
Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) (taxid: 269796) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 EC: 8 |
| >sp|B6JHG4|ARGC_OLICO N-acetyl-gamma-glutamyl-phosphate reductase OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=argC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 388 bits (996), Expect = e-107, Method: Compositional matrix adjust.
Identities = 192/346 (55%), Positives = 246/346 (71%), Gaps = 8/346 (2%)
Query: 60 SEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTM 119
+EK+ +IG+LGASGYTGAE+VRLL HP I L+TADR+AG +G VFP DLP +
Sbjct: 2 AEKK-KIGILGASGYTGAELVRLLLRHPRVEIVLLTADRRAGHKMGDVFPQFAPYDLPQL 60
Query: 120 VAVKDADFS--NVDAVFCCLPHGTTQEIIKGL----PKSLKIVDLSADFRLRDVSEYEEW 173
V++ D++ +D VFC LPH TTQ ++K L P++ K+VDLSADFRL+D + Y +W
Sbjct: 61 VSIDSVDWAAAKLDLVFCALPHATTQTVLKDLLSKAPET-KVVDLSADFRLQDPAVYAKW 119
Query: 174 YGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNI 233
YG H A DLQ+EAVYGLTEI R D+K ARLVANPGCY T QLPL+PL++A I+ I
Sbjct: 120 YGHEHHALDLQQEAVYGLTEIYRRDVKKARLVANPGCYTTCAQLPLIPLLKAKAIESDEI 179
Query: 234 IIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTP 293
+IDAKSG++GAGR AKE L+SE++EG ++YGV HRH+ E++Q + A V V+FTP
Sbjct: 180 VIDAKSGMTGAGRSAKEEMLFSEVSEGFHAYGVGHHRHMSELDQEFSKAAGKDVLVTFTP 239
Query: 294 HLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYC 353
HL PM RG+ STIYV G T DL++ L YE + FV +L G P + +VRGSN
Sbjct: 240 HLTPMNRGIYSTIYVRGRRGKTARDLHETLSKQYEKDPFVYVLPFGKTPNSRHVRGSNMT 299
Query: 354 LMNVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMLGFPENTGL 399
+ V DR PGRAII+S +DNL KGASGQA+QN+N+MLGF E GL
Sbjct: 300 FIGVAEDRKPGRAIIVSTLDNLTKGASGQAVQNMNVMLGFAETLGL 345
|
Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) (taxid: 504832) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 EC: 8 |
| >sp|Q9LA02|ARGC_RHOCB N-acetyl-gamma-glutamyl-phosphate reductase OS=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=argC PE=3 SV=2 | Back alignment and function description |
|---|
Score = 361 bits (927), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 174/343 (50%), Positives = 231/343 (67%), Gaps = 5/343 (1%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKD 124
+I +LGASGYTGAE+ R++A HP I ++ DRKAG +G VFPHL LP +V +++
Sbjct: 4 KIAILGASGYTGAELARIIATHPEMEITALSGDRKAGMRMGEVFPHLRHIGLPDLVKIEE 63
Query: 125 ADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQ 184
DFS +D FC LPH T+Q +I LP+ LK+VDLSADFRLRD +EYE+WYG+PH A DLQ
Sbjct: 64 IDFSGIDLAFCALPHATSQAVIAELPRDLKVVDLSADFRLRDAAEYEKWYGKPHAAMDLQ 123
Query: 185 KEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGA 244
EAVYGLTE RE++K ARL A GC + Q + PLI+A +I I+ID K+GVSGA
Sbjct: 124 AEAVYGLTEFYREELKTARLCAGTGCNAAAGQYAIRPLIEAGVIDLDEIVIDLKAGVSGA 183
Query: 245 GRGAKEANLYSEIAEGIYSYGV-TRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQ 303
GR KE L++E+A G Y +HRH+ E +Q + A V V FTPHLMP RG+
Sbjct: 184 GRSLKENLLHAELAGGTMPYSAGGKHRHLGEFDQEFSKVAGRPVRVQFTPHLMPFNRGIL 243
Query: 304 STIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIP 363
+T+YV P ED++ L YE+E F+++L G + T +V GSN+ + V DR+P
Sbjct: 244 ATVYVRGTP----EDIHAALASRYENEVFLEVLPFGQLASTRSVAGSNFVHLGVIGDRLP 299
Query: 364 GRAIIISVIDNLVKGASGQALQNLNIMLGFPENTGLLYQPLFP 406
GRA++ +DNL KG+SGQA+QN N+MLG PE GL+ P+FP
Sbjct: 300 GRAVVTVALDNLTKGSSGQAIQNANLMLGLPETLGLMLAPVFP 342
|
Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) (taxid: 272942) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 EC: 8 |
| >sp|Q5LS92|ARGC_RUEPO N-acetyl-gamma-glutamyl-phosphate reductase OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=argC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 356 bits (914), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 179/343 (52%), Positives = 226/343 (65%), Gaps = 5/343 (1%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKD 124
+I +LGASGYTGAE+VRL+A HP I ++ +RKAGQS+ VFPHL DLP + + +
Sbjct: 4 KIAILGASGYTGAELVRLIAEHPNMEIVALSGERKAGQSMAEVFPHLRHLDLPVLCKIDE 63
Query: 125 ADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQ 184
DF+ VD FC LPH T+QE+I+ LP +LKIVDLSADFRLRD Y WYG H+A + Q
Sbjct: 64 IDFAGVDLCFCALPHKTSQEVIRALPATLKIVDLSADFRLRDPEAYRTWYGNEHVALEQQ 123
Query: 185 KEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGA 244
EAVYGLTE R+ I+ ARLVA GC + Q L PLI A +I II+D K VSGA
Sbjct: 124 AEAVYGLTEFYRDQIRTARLVAGTGCNAATGQYVLRPLIAAGVIDLDEIILDLKCAVSGA 183
Query: 245 GRGAKEANLYSEIAEGIYSYGV-TRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQ 303
GR KE L++E++EG +Y V HRH+ E +Q + A V V FTPHL+P RG+
Sbjct: 184 GRSLKENLLHAELSEGANAYAVGGTHRHLGEFDQEFSALAGRPVQVQFTPHLIPANRGIL 243
Query: 304 STIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIP 363
+T YV + ++Q L +Y E FV +L G P TH+VRGSN+C + V DRI
Sbjct: 244 ATTYVRG----DAQTVFQTLAAAYADEPFVHVLPFGETPSTHHVRGSNHCHIGVTGDRIA 299
Query: 364 GRAIIISVIDNLVKGASGQALQNLNIMLGFPENTGLLYQPLFP 406
GRAI+I+ +DNL KG+SGQALQN N+MLG E TGL PLFP
Sbjct: 300 GRAIVIAALDNLTKGSSGQALQNANLMLGETETTGLTMAPLFP 342
|
Silicibacter pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (taxid: 246200) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 EC: 8 |
| >sp|Q1GHL0|ARGC_RUEST N-acetyl-gamma-glutamyl-phosphate reductase OS=Ruegeria sp. (strain TM1040) GN=argC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 354 bits (908), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 175/342 (51%), Positives = 226/342 (66%), Gaps = 5/342 (1%)
Query: 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDA 125
+ +LGASGYTGAE++RL++ HP IK + A+RKAG + VFPHL LPT+ + +
Sbjct: 5 VAILGASGYTGAELIRLISQHPSITIKALAAERKAGMEMADVFPHLRHLSLPTLCKIDEI 64
Query: 126 DFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQK 185
DF+ +D FC LPH T+QE+I LP LKIVDLSADFRLRD YE+WYG PH A + Q+
Sbjct: 65 DFAQIDLCFCALPHKTSQEVIAKLPGDLKIVDLSADFRLRDPEAYEKWYGNPHAALEQQQ 124
Query: 186 EAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAG 245
EAVYGLTE R++IK ARLVA GC + Q L PLI A +I II+D K VSGAG
Sbjct: 125 EAVYGLTEFYRDEIKGARLVAGTGCNAATGQFALRPLIAAGVIDLDEIILDMKCAVSGAG 184
Query: 246 RGAKEANLYSEIAEGIYSYGV-TRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQS 304
R KE L++E++EG +Y + HRH+ E +Q + A V V FTPHL+P+ RG+ +
Sbjct: 185 RALKENLLHAELSEGYNAYAIGGTHRHIGEFDQEFSAIAGRPVKVQFTPHLLPVNRGILA 244
Query: 305 TIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIPG 364
T YV+ + +Y+ +Y E FV+LL G P TH+VRGSN+ + V DRI G
Sbjct: 245 TTYVKG----DAQAIYETFAKAYADEPFVELLPFGEAPSTHHVRGSNFVHIGVTADRIAG 300
Query: 365 RAIIISVIDNLVKGASGQALQNLNIMLGFPENTGLLYQPLFP 406
RAI+I +DNL KG+SGQALQN N+MLG E GL+ PLFP
Sbjct: 301 RAIVIVALDNLTKGSSGQALQNANLMLGEDETAGLMMAPLFP 342
|
Silicibacter sp. (strain TM1040) (taxid: 292414) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 EC: 8 |
| >sp|B9KSY0|ARGC_RHOSK N-acetyl-gamma-glutamyl-phosphate reductase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=argC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 348 bits (894), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 175/342 (51%), Positives = 237/342 (69%), Gaps = 5/342 (1%)
Query: 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDA 125
I +LGASGYTGAE+VRL+A HP I ++ DRKAG ++ VFP L DLP + +++
Sbjct: 5 IAILGASGYTGAELVRLIATHPSMRIVALSGDRKAGMAMAEVFPFLRHLDLPRLQKIEEI 64
Query: 126 DFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQK 185
DFS+VD FC LPH T+Q +I GLP+ LKIVDLSADFRLRD + YE WYG+PH AP+LQK
Sbjct: 65 DFSSVDLAFCALPHATSQAVIAGLPRDLKIVDLSADFRLRDPAAYETWYGKPHAAPELQK 124
Query: 186 EAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAG 245
EAVYGLTE R++I+ ARLVA GC + Q + PLI+A +I +I+ID K+GVSGAG
Sbjct: 125 EAVYGLTEFYRDEIRAARLVAGTGCNAATGQYAIRPLIEAGVIDLDDILIDLKAGVSGAG 184
Query: 246 RGAKEANLYSEIAEGIYSYGV-TRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQS 304
R KE L++E++EG ++Y RHRH+ E +Q + A V V FTPHL PM RG+ +
Sbjct: 185 RSLKENLLHAELSEGTHAYSAGGRHRHLGEFDQEFSKIAGRPVQVRFTPHLTPMNRGILA 244
Query: 305 TIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIPG 364
+YV+ P + +++ L Y E F+++L G +P T ++RGSNY + V DR+PG
Sbjct: 245 NVYVKGDP----QAVHRALTERYLTETFLEVLPFGALPSTRDIRGSNYVHIGVIGDRVPG 300
Query: 365 RAIIISVIDNLVKGASGQALQNLNIMLGFPENTGLLYQPLFP 406
A++++V+DNL KG+SGQA+QN N+MLG E GL P+FP
Sbjct: 301 CAMVVAVLDNLCKGSSGQAIQNANLMLGLDEAEGLRLAPVFP 342
|
Rhodobacter sphaeroides (strain KD131 / KCTC 12085) (taxid: 557760) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 EC: 8 |
| >sp|Q3J277|ARGC_RHOS4 N-acetyl-gamma-glutamyl-phosphate reductase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=argC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 348 bits (893), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 174/342 (50%), Positives = 237/342 (69%), Gaps = 5/342 (1%)
Query: 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDA 125
I +LGASGYTGAE+VRL+A HP I ++ DRKAG ++ VFP L DLP + +++
Sbjct: 5 IAILGASGYTGAELVRLIATHPAMRIVALSGDRKAGMAMSEVFPFLRHLDLPRLQKIEEI 64
Query: 126 DFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQK 185
DFS+VD FC LPH T+Q +I GLP+ LK+VDLSADFRLRD + YE WYG+PH AP+LQK
Sbjct: 65 DFSSVDLAFCALPHATSQAVIAGLPRDLKVVDLSADFRLRDPAAYETWYGKPHAAPELQK 124
Query: 186 EAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAG 245
EAVYGLTE R++I+ ARLVA GC + Q + PLI+A +I +I+ID K+GVSGAG
Sbjct: 125 EAVYGLTEFYRDEIRGARLVAGTGCNAATGQYAIRPLIEAGVIDLDDILIDLKAGVSGAG 184
Query: 246 RGAKEANLYSEIAEGIYSYGV-TRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQS 304
R KE L++E++EG ++Y RHRH+ E +Q + A V V FTPHL PM RG+ +
Sbjct: 185 RSLKENLLHAELSEGTHAYSAGGRHRHLGEFDQEFSKIAGRPVQVRFTPHLTPMNRGILA 244
Query: 305 TIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIPG 364
+YV+ P + +++ L Y E F+++L G +P T ++RGSNY + V DR+PG
Sbjct: 245 NVYVKGDP----QAVHRALTERYLTETFLEVLPFGALPSTRDIRGSNYVHIGVIGDRVPG 300
Query: 365 RAIIISVIDNLVKGASGQALQNLNIMLGFPENTGLLYQPLFP 406
A++++V+DNL KG+SGQA+QN N+MLG E GL P+FP
Sbjct: 301 CAMVVAVLDNLCKGSSGQAIQNANLMLGLDEAAGLGLAPVFP 342
|
Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) (taxid: 272943) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 EC: 8 |
| >sp|A4WQY7|ARGC_RHOS5 N-acetyl-gamma-glutamyl-phosphate reductase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=argC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 345 bits (886), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 174/342 (50%), Positives = 236/342 (69%), Gaps = 5/342 (1%)
Query: 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDA 125
I +LGASGYTGAE+VRL+A HP I ++ DRKAG ++ VFP L DLP + + +
Sbjct: 5 IAILGASGYTGAELVRLIATHPSMRIVALSGDRKAGMAMSEVFPFLRHLDLPRLQKIDEI 64
Query: 126 DFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQK 185
+FSNVD FC LPH T+QE+I LP+ LKIVDLSADFRLRD + YE WYG+PH AP+LQK
Sbjct: 65 NFSNVDLAFCALPHATSQEVISALPRDLKIVDLSADFRLRDPAAYETWYGKPHSAPELQK 124
Query: 186 EAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAG 245
EAVYGLTE R++I+ ARLVA GC + Q + PLI+A +I +I+ID K+GVSGAG
Sbjct: 125 EAVYGLTEFYRDEIRGARLVAGTGCNAATGQYAIRPLIEAGVIDLDDILIDLKAGVSGAG 184
Query: 246 RGAKEANLYSEIAEGIYSYGV-TRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQS 304
R KE L++E++EG ++Y HRH+ E +Q + A V V FTPHL PM RG+ +
Sbjct: 185 RSLKENLLHAELSEGTHAYSAGGTHRHLGEFDQEFSKIAGRPVQVRFTPHLTPMNRGILA 244
Query: 305 TIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIPG 364
+++V+ P + +++ L Y E F+++L G +P T ++RGSNY + V DRIPG
Sbjct: 245 SVHVKGDP----QAVHRALADRYLTETFLEVLPFGALPSTRDIRGSNYVHIGVIGDRIPG 300
Query: 365 RAIIISVIDNLVKGASGQALQNLNIMLGFPENTGLLYQPLFP 406
A++++V+DNL KG+SGQA+QN N+MLG E GL P+FP
Sbjct: 301 CALVVAVLDNLCKGSSGQAIQNANLMLGLDEAAGLRLAPVFP 342
|
Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) (taxid: 349102) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 406 | ||||||
| 225428691 | 398 | PREDICTED: probable N-acetyl-gamma-gluta | 0.980 | 1.0 | 0.795 | 0.0 | |
| 255561649 | 400 | N-acetyl-gamma-glutamyl-phosphate reduct | 0.982 | 0.997 | 0.759 | 1e-180 | |
| 240254481 | 401 | N-acetyl-gamma-glutamyl-phosphate reduct | 0.982 | 0.995 | 0.770 | 1e-179 | |
| 297836262 | 401 | predicted protein [Arabidopsis lyrata su | 0.980 | 0.992 | 0.763 | 1e-179 | |
| 16604368 | 401 | At2g19940/F6F22.3 [Arabidopsis thaliana] | 0.982 | 0.995 | 0.770 | 1e-179 | |
| 56967310 | 359 | Chain A, X-Ray Structure Of Gene Product | 0.881 | 0.997 | 0.835 | 1e-177 | |
| 224123260 | 352 | predicted protein [Populus trichocarpa] | 0.857 | 0.988 | 0.833 | 1e-174 | |
| 449455224 | 389 | PREDICTED: probable N-acetyl-gamma-gluta | 0.958 | 1.0 | 0.736 | 1e-173 | |
| 116786886 | 415 | unknown [Picea sitchensis] | 0.940 | 0.920 | 0.736 | 1e-171 | |
| 357436985 | 385 | N-acetyl-gamma-glutamyl-phosphate reduct | 0.948 | 1.0 | 0.724 | 1e-170 |
| >gi|225428691|ref|XP_002284953.1| PREDICTED: probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic [Vitis vinifera] gi|297741338|emb|CBI32469.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/406 (79%), Positives = 360/406 (88%), Gaps = 8/406 (1%)
Query: 1 MSAATFSSLCFSRGCFWKDEAKNSPRVMKGSGKVKISSIRGSATLPTKSLQVEDGKTQKS 60
MS+A SS+ F R F K E K+S +G+ K+ IRGS T +S+Q + K +KS
Sbjct: 1 MSSAHLSSIRFDREWFRKSETKSS------NGR-KLH-IRGSVTSSPQSVQFAEAKAEKS 52
Query: 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMV 120
K VRIG+LGASGYTG+EIVRLLANHP+FGI LMTADRKAGQSIGSVFPHLI+QDLP MV
Sbjct: 53 GKAVRIGVLGASGYTGSEIVRLLANHPHFGITLMTADRKAGQSIGSVFPHLITQDLPDMV 112
Query: 121 AVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIA 180
A+KDA FSNVDAVFCCLPHGTTQ+IIK LPKSLKIVDLSADFRL++++EYEEWYGQPH A
Sbjct: 113 AIKDAKFSNVDAVFCCLPHGTTQDIIKALPKSLKIVDLSADFRLQEIAEYEEWYGQPHRA 172
Query: 181 PDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSG 240
PDLQKEAVYGLTEI RE+IK ARLVANPGCYPT+IQLPLVPL++ANLI+ RN+IIDAKSG
Sbjct: 173 PDLQKEAVYGLTEILREEIKAARLVANPGCYPTTIQLPLVPLLKANLIETRNLIIDAKSG 232
Query: 241 VSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMIR 300
VSGAGRGAKEANLY+EIAEGI+SYG+TRHRHVPEIEQGL+ A +KVTVSFTPHLMPM R
Sbjct: 233 VSGAGRGAKEANLYTEIAEGIHSYGITRHRHVPEIEQGLSDAAHAKVTVSFTPHLMPMSR 292
Query: 301 GMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPD 360
GMQSTIYVEM PGVTIEDLY+QLKI+YE EEFV LLEKGVVP T NVRGSNYCL+NVFPD
Sbjct: 293 GMQSTIYVEMTPGVTIEDLYKQLKIAYEDEEFVILLEKGVVPHTRNVRGSNYCLLNVFPD 352
Query: 361 RIPGRAIIISVIDNLVKGASGQALQNLNIMLGFPENTGLLYQPLFP 406
RIPGRAII+SVIDNLVKGASGQALQNLN+M+G PENTGLLYQPLFP
Sbjct: 353 RIPGRAIIVSVIDNLVKGASGQALQNLNVMMGLPENTGLLYQPLFP 398
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255561649|ref|XP_002521834.1| N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis] gi|223538872|gb|EEF40470.1| N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 636 bits (1640), Expect = e-180, Method: Compositional matrix adjust.
Identities = 309/407 (75%), Positives = 344/407 (84%), Gaps = 8/407 (1%)
Query: 1 MSAATFSSLCFSRGCFWKDEAKNSPRVMKGSGKVKISSIRGSATLPTKSLQVEDGKTQKS 60
MS + F+S+C R C WK E + S + ++ + G + KSLQ+ + K
Sbjct: 1 MSTSVFNSVCLDRECLWKGEVRFSKLRKQCEYRLYV----GRSNASRKSLQI---RNSKQ 53
Query: 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQ-DLPTM 119
EKQVR+ LLGASGYTGAEI+RLLANHP+FGI +MTADR AG+SI SVFPHLI+Q DLP +
Sbjct: 54 EKQVRVALLGASGYTGAEIIRLLANHPFFGITVMTADRNAGKSIESVFPHLITQKDLPVL 113
Query: 120 VAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHI 179
++ DA FS+VDAVFCCLPHGTTQEIIK LP+ LK+VDLSADFRLRD+SEYEEWYGQPH
Sbjct: 114 ISTNDAKFSDVDAVFCCLPHGTTQEIIKSLPEGLKVVDLSADFRLRDISEYEEWYGQPHR 173
Query: 180 APDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKS 239
AP LQ+EA+YGLTEI RE+IK+ARLVANPGCYPTSIQLPLVPLI+ANLI Y NIIIDAKS
Sbjct: 174 APKLQEEAIYGLTEIFREEIKSARLVANPGCYPTSIQLPLVPLIKANLIGYENIIIDAKS 233
Query: 240 GVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMI 299
GVSGAGRGAK ANLY+E+ EGI SYGVTRHRH PEIEQGL+ ASSKV VSFTPHLMPM
Sbjct: 234 GVSGAGRGAKVANLYTELTEGIMSYGVTRHRHAPEIEQGLSDAASSKVIVSFTPHLMPMS 293
Query: 300 RGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFP 359
RGMQSTIYVEMA VTIEDLYQQLK+SYE EEFVKLLEKGVVPRTH+VRGSNYC MNVFP
Sbjct: 294 RGMQSTIYVEMASEVTIEDLYQQLKVSYEGEEFVKLLEKGVVPRTHDVRGSNYCYMNVFP 353
Query: 360 DRIPGRAIIISVIDNLVKGASGQALQNLNIMLGFPENTGLLYQPLFP 406
DRIPGRAIIISVIDNLVKGASGQALQNLNIM+GFPENTGL PLFP
Sbjct: 354 DRIPGRAIIISVIDNLVKGASGQALQNLNIMMGFPENTGLSCLPLFP 400
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|240254481|ref|NP_565461.4| N-acetyl-gamma-glutamyl-phosphate reductase [Arabidopsis thaliana] gi|240254483|ref|NP_849993.4| N-acetyl-gamma-glutamyl-phosphate reductase [Arabidopsis thaliana] gi|334184607|ref|NP_180668.5| alpha/beta-hydrolase domain-containing protein [Arabidopsis thaliana] gi|73921680|sp|Q93Z70.2|ARGC_ARATH RecName: Full=Probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic; Short=AGPR; AltName: Full=N-acetyl-glutamate semialdehyde dehydrogenase; Short=NAGSA dehydrogenase; Flags: Precursor gi|227204139|dbj|BAH56921.1| AT2G19940 [Arabidopsis thaliana] gi|330251851|gb|AEC06945.1| N-acetyl-gamma-glutamyl-phosphate reductase [Arabidopsis thaliana] gi|330251852|gb|AEC06946.1| N-acetyl-gamma-glutamyl-phosphate reductase [Arabidopsis thaliana] gi|330253399|gb|AEC08493.1| alpha/beta-hydrolase domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 635 bits (1637), Expect = e-179, Method: Compositional matrix adjust.
Identities = 312/405 (77%), Positives = 350/405 (86%), Gaps = 6/405 (1%)
Query: 2 SAATFSSLCFSRGCFWKDEAKNSPRVMKGSGKVKISSIRGSATLPTKSLQVEDGKTQKSE 61
+A+ FSS+ +GC++K E K RV K +++ A+ + S +V + K E
Sbjct: 3 TASAFSSI---QGCWFKGERKI--RVADKRAK-RLTLGSHVASPSSMSFRVSASSSVKPE 56
Query: 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVA 121
K +RIGLLGASGYTGAEIVRLLANHP+F + LMTADRKAGQS+ SVFPHL +Q LPT+V+
Sbjct: 57 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVS 116
Query: 122 VKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAP 181
VKDADFS VDAVFCCLPHGTTQEIIK LP +LKIVDLSADFRLR+++EYEEWYGQPH A
Sbjct: 117 VKDADFSTVDAVFCCLPHGTTQEIIKELPTALKIVDLSADFRLRNIAEYEEWYGQPHKAV 176
Query: 182 DLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGV 241
+LQKE VYGLTEI REDIK ARLVANPGCYPT+IQLPLVPL++ANLI++ NIIIDAKSGV
Sbjct: 177 ELQKEVVYGLTEILREDIKKARLVANPGCYPTTIQLPLVPLLKANLIKHENIIIDAKSGV 236
Query: 242 SGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMIRG 301
SGAGRGAKEANLYSEIAEGI SYGVTRHRHVPEIEQGL+ A SKVTVSFTPHLMPMIRG
Sbjct: 237 SGAGRGAKEANLYSEIAEGISSYGVTRHRHVPEIEQGLSDVAQSKVTVSFTPHLMPMIRG 296
Query: 302 MQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDR 361
MQSTIYVEMAPGV EDL+QQLK SYE EEFVK+L++GVVPRTHNVRGSNYC M+VFPDR
Sbjct: 297 MQSTIYVEMAPGVRTEDLHQQLKTSYEDEEFVKVLDEGVVPRTHNVRGSNYCHMSVFPDR 356
Query: 362 IPGRAIIISVIDNLVKGASGQALQNLNIMLGFPENTGLLYQPLFP 406
IPGRAIIISVIDNLVKGASGQALQNLNIMLG+PE TGLL+QPLFP
Sbjct: 357 IPGRAIIISVIDNLVKGASGQALQNLNIMLGYPETTGLLHQPLFP 401
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297836262|ref|XP_002886013.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297331853|gb|EFH62272.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust.
Identities = 310/406 (76%), Positives = 349/406 (85%), Gaps = 8/406 (1%)
Query: 2 SAATFSSLCFSRGCFWKDEAKNSPRVMKGSGKVKISSIRGSATLPTK-SLQVEDGKTQKS 60
+A+TFSS+ +GC++K E R+ +VK S+ P+ S +V + K
Sbjct: 3 TASTFSSI---QGCWFKGER----RIRVADKRVKKLSLGSHVASPSSMSFRVSASSSVKP 55
Query: 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMV 120
EK +RIGLLGASGYTGAEIVRLLANHP+F + LMTADRKAGQS+ SVFPHL +Q LP+++
Sbjct: 56 EKDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPSLI 115
Query: 121 AVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIA 180
VKDADFS VDAVFCCLPHGTTQEIIK LP +LKIVDLSADFRLR+++EYEEWYGQPH A
Sbjct: 116 LVKDADFSTVDAVFCCLPHGTTQEIIKELPTALKIVDLSADFRLRNIAEYEEWYGQPHKA 175
Query: 181 PDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSG 240
+LQKE VYGLTEI REDIK ARLVANPGCYPT+IQLPLVPLI+ANLI++ NIIIDAKSG
Sbjct: 176 VELQKEVVYGLTEILREDIKKARLVANPGCYPTTIQLPLVPLIKANLIKHENIIIDAKSG 235
Query: 241 VSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMIR 300
VSGAGRGAKEANLYSEIAEGI SYGVTRHRHVPEIEQGL+ A SKVTVSFTPHLMPMIR
Sbjct: 236 VSGAGRGAKEANLYSEIAEGISSYGVTRHRHVPEIEQGLSDVAQSKVTVSFTPHLMPMIR 295
Query: 301 GMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPD 360
GMQSTIYVEMAPGV EDL+ QL++SYE EEFVK+L++GVVPRTHNVRGSNYC M+VFPD
Sbjct: 296 GMQSTIYVEMAPGVRTEDLHHQLRMSYEDEEFVKVLDEGVVPRTHNVRGSNYCHMSVFPD 355
Query: 361 RIPGRAIIISVIDNLVKGASGQALQNLNIMLGFPENTGLLYQPLFP 406
RIPGRAIIISVIDNLVKGASGQALQNLNIMLG+PE TGLL+QPLFP
Sbjct: 356 RIPGRAIIISVIDNLVKGASGQALQNLNIMLGYPETTGLLHQPLFP 401
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|16604368|gb|AAL24190.1| At2g19940/F6F22.3 [Arabidopsis thaliana] gi|19699208|gb|AAL90970.1| At2g19940/F6F22.3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust.
Identities = 312/405 (77%), Positives = 349/405 (86%), Gaps = 6/405 (1%)
Query: 2 SAATFSSLCFSRGCFWKDEAKNSPRVMKGSGKVKISSIRGSATLPTKSLQVEDGKTQKSE 61
+A+ FSS+ +GC++K E K RV K +++ A+ + S +V + K E
Sbjct: 3 TASAFSSI---QGCWFKGERKI--RVADKRAK-RLTLGSHVASPSSMSFRVSASSSVKPE 56
Query: 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVA 121
K +RIGLLGASGYTGAEIVRLLANHP+F + LMTADRKAGQS+ SVFPHL Q LPT+V+
Sbjct: 57 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRVQKLPTLVS 116
Query: 122 VKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAP 181
VKDADFS VDAVFCCLPHGTTQEIIK LP +LKIVDLSADFRLR+++EYEEWYGQPH A
Sbjct: 117 VKDADFSTVDAVFCCLPHGTTQEIIKELPTALKIVDLSADFRLRNIAEYEEWYGQPHKAV 176
Query: 182 DLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGV 241
+LQKE VYGLTEI REDIK ARLVANPGCYPT+IQLPLVPL++ANLI++ NIIIDAKSGV
Sbjct: 177 ELQKEVVYGLTEILREDIKKARLVANPGCYPTTIQLPLVPLLKANLIKHENIIIDAKSGV 236
Query: 242 SGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMIRG 301
SGAGRGAKEANLYSEIAEGI SYGVTRHRHVPEIEQGL+ A SKVTVSFTPHLMPMIRG
Sbjct: 237 SGAGRGAKEANLYSEIAEGISSYGVTRHRHVPEIEQGLSDVAQSKVTVSFTPHLMPMIRG 296
Query: 302 MQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDR 361
MQSTIYVEMAPGV EDL+QQLK SYE EEFVK+L++GVVPRTHNVRGSNYC M+VFPDR
Sbjct: 297 MQSTIYVEMAPGVRTEDLHQQLKTSYEDEEFVKVLDEGVVPRTHNVRGSNYCHMSVFPDR 356
Query: 362 IPGRAIIISVIDNLVKGASGQALQNLNIMLGFPENTGLLYQPLFP 406
IPGRAIIISVIDNLVKGASGQALQNLNIMLG+PE TGLL+QPLFP
Sbjct: 357 IPGRAIIISVIDNLVKGASGQALQNLNIMLGYPETTGLLHQPLFP 401
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|56967310|pdb|1XYG|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At2g19940 gi|56967311|pdb|1XYG|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At2g19940 gi|56967312|pdb|1XYG|C Chain C, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At2g19940 gi|56967313|pdb|1XYG|D Chain D, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At2g19940 gi|150261481|pdb|2Q49|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of Gene Product From Arabidopsis Thaliana At2g19940 gi|150261482|pdb|2Q49|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of Gene Product From Arabidopsis Thaliana At2g19940 gi|150261483|pdb|2Q49|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of Gene Product From Arabidopsis Thaliana At2g19940 gi|150261484|pdb|2Q49|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of Gene Product From Arabidopsis Thaliana At2g19940 gi|20197293|gb|AAC62122.2| putative N-acetyl-gamma-glutamyl-phosphate reductase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 625 bits (1613), Expect = e-177, Method: Compositional matrix adjust.
Identities = 299/358 (83%), Positives = 326/358 (91%)
Query: 49 SLQVEDGKTQKSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVF 108
S +V + K EK +RIGLLGASGYTGAEIVRLLANHP+F + LMTADRKAGQS+ SVF
Sbjct: 2 SFRVSASSSVKPEKDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVF 61
Query: 109 PHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVS 168
PHL +Q LPT+V+VKDADFS VDAVFCCLPHGTTQEIIK LP +LKIVDLSADFRLR+++
Sbjct: 62 PHLRAQKLPTLVSVKDADFSTVDAVFCCLPHGTTQEIIKELPTALKIVDLSADFRLRNIA 121
Query: 169 EYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLI 228
EYEEWYGQPH A +LQKE VYGLTEI REDIK ARLVANPGCYPT+IQLPLVPL++ANLI
Sbjct: 122 EYEEWYGQPHKAVELQKEVVYGLTEILREDIKKARLVANPGCYPTTIQLPLVPLLKANLI 181
Query: 229 QYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVT 288
++ NIIIDAKSGVSGAGRGAKEANLYSEIAEGI SYGVTRHRHVPEIEQGL+ A SKVT
Sbjct: 182 KHENIIIDAKSGVSGAGRGAKEANLYSEIAEGISSYGVTRHRHVPEIEQGLSDVAQSKVT 241
Query: 289 VSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVR 348
VSFTPHLMPMIRGMQSTIYVEMAPGV EDL+QQLK SYE EEFVK+L++GVVPRTHNVR
Sbjct: 242 VSFTPHLMPMIRGMQSTIYVEMAPGVRTEDLHQQLKTSYEDEEFVKVLDEGVVPRTHNVR 301
Query: 349 GSNYCLMNVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMLGFPENTGLLYQPLFP 406
GSNYC M+VFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMLG+PE TGLL+QPLFP
Sbjct: 302 GSNYCHMSVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMLGYPETTGLLHQPLFP 359
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224123260|ref|XP_002330272.1| predicted protein [Populus trichocarpa] gi|222871307|gb|EEF08438.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust.
Identities = 291/349 (83%), Positives = 322/349 (92%), Gaps = 1/349 (0%)
Query: 59 KSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQ-DLP 117
K EK+VR+ LLGASGYTGAEI+RLLANHPYFGI +MTADR AG+S+ SVFPHLI+Q DLP
Sbjct: 4 KQEKEVRVALLGASGYTGAEIIRLLANHPYFGITVMTADRNAGKSMDSVFPHLITQKDLP 63
Query: 118 TMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQP 177
+V+ DADFS+VDAVFCCLPHGTTQEIIKGLPK LKIVDLSADFRLR+VSEYEEWYGQP
Sbjct: 64 VLVSTSDADFSDVDAVFCCLPHGTTQEIIKGLPKGLKIVDLSADFRLRNVSEYEEWYGQP 123
Query: 178 HIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDA 237
H APDLQ+EAVYGLTEI RE+IKNA LVANPGCYPTSIQLPLVPLI+ANLI+++NII+DA
Sbjct: 124 HRAPDLQEEAVYGLTEILREEIKNAHLVANPGCYPTSIQLPLVPLIKANLIEHKNIIVDA 183
Query: 238 KSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMP 297
KSGVSGAGRGAK ANLY+E+ EGI SYGVTRHRHVPEIEQGL+ A SKVT+SFTPHLMP
Sbjct: 184 KSGVSGAGRGAKVANLYTELTEGIMSYGVTRHRHVPEIEQGLSDAAHSKVTISFTPHLMP 243
Query: 298 MIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNV 357
M RGMQSTIYVEMA GVT ++LYQQLK+SY+ EEFV+LLEKG VPRTH+VRGSNYC +NV
Sbjct: 244 MTRGMQSTIYVEMASGVTTDNLYQQLKVSYQDEEFVRLLEKGAVPRTHDVRGSNYCYINV 303
Query: 358 FPDRIPGRAIIISVIDNLVKGASGQALQNLNIMLGFPENTGLLYQPLFP 406
FPDRIPGRAIIISVIDNLVKGASGQALQNLN+M+GFPENTGL Y PLFP
Sbjct: 304 FPDRIPGRAIIISVIDNLVKGASGQALQNLNLMMGFPENTGLGYLPLFP 352
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449455224|ref|XP_004145353.1| PREDICTED: probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic-like [Cucumis sativus] gi|449473256|ref|XP_004153831.1| PREDICTED: probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic-like [Cucumis sativus] gi|449502406|ref|XP_004161631.1| PREDICTED: probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust.
Identities = 299/406 (73%), Positives = 340/406 (83%), Gaps = 17/406 (4%)
Query: 1 MSAATFSSLCFSRGCFWKDEAKNSPRVMKGSGKVKISSIRGSATLPTKSLQVEDGKTQKS 60
M+++TFSSL C KDE++ + G V S+ V K+Q
Sbjct: 1 MTSSTFSSL----SCLLKDESQILKLRKRSVGNVFFKC----------SMSV---KSQNP 43
Query: 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMV 120
+ +VRIG+LGASGYTG+EIVRLLANHP+FGI LMTADRKAGQ SVFPHL +QDLP +V
Sbjct: 44 QPEVRIGVLGASGYTGSEIVRLLANHPHFGITLMTADRKAGQPFSSVFPHLFTQDLPELV 103
Query: 121 AVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIA 180
+KDADFS VDA+FCCLPHGTTQE+IK LPK LKIVDLSADFRL+D EYEEWYGQPH A
Sbjct: 104 TIKDADFSKVDAIFCCLPHGTTQEVIKALPKELKIVDLSADFRLQDPFEYEEWYGQPHRA 163
Query: 181 PDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSG 240
DLQKEAVYGLTEI R+++K ARLVANPGCYPTSIQLPLVPL++ANLIQ IIID+KSG
Sbjct: 164 VDLQKEAVYGLTEILRDEVKGARLVANPGCYPTSIQLPLVPLMKANLIQLGGIIIDSKSG 223
Query: 241 VSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMIR 300
VSGAGRGAKEANLY+EIAEG+YSYG+TRHRHVPEIEQGL+ A SKVTVSFTPHLMPMIR
Sbjct: 224 VSGAGRGAKEANLYTEIAEGMYSYGITRHRHVPEIEQGLSEAAKSKVTVSFTPHLMPMIR 283
Query: 301 GMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPD 360
GMQSTIYVEMAPG+T EDL+Q LK+SY+ EEFV++L+KGVVPRTHNVRGSNYC +N+FPD
Sbjct: 284 GMQSTIYVEMAPGITTEDLHQHLKVSYKEEEFVRVLDKGVVPRTHNVRGSNYCHINIFPD 343
Query: 361 RIPGRAIIISVIDNLVKGASGQALQNLNIMLGFPENTGLLYQPLFP 406
RI GRAII+SVIDNLVKGASGQALQNLN+M+GF E TGLLYQPLFP
Sbjct: 344 RIQGRAIIVSVIDNLVKGASGQALQNLNLMMGFHETTGLLYQPLFP 389
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|116786886|gb|ABK24282.1| unknown [Picea sitchensis] | Back alignment and taxonomy information |
|---|
Score = 608 bits (1568), Expect = e-171, Method: Compositional matrix adjust.
Identities = 288/391 (73%), Positives = 327/391 (83%), Gaps = 9/391 (2%)
Query: 16 FWKDEAKNSPRVMKGSGKVKISSIRGSATLPTKSLQVEDGKTQKSEKQVRIGLLGASGYT 75
+WK K+S ++ IR S ++L+ QK+ + VR+G+LGASGYT
Sbjct: 34 YWKQSVKSS---------IRFEGIRASVAASPRTLESSKHGMQKAGEVVRVGVLGASGYT 84
Query: 76 GAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFC 135
G+EIVRLLA HPYF I LMTADRKAGQS+GSVFPHLI+QDLP M+A+KDADFS VDAVFC
Sbjct: 85 GSEIVRLLATHPYFKITLMTADRKAGQSLGSVFPHLITQDLPDMIAIKDADFSKVDAVFC 144
Query: 136 CLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEIS 195
CLPHGTTQEII LP +LK+VDLSADFRLRD ++YEEWY QPH APDLQKEA+YGLTEI
Sbjct: 145 CLPHGTTQEIIASLPTTLKVVDLSADFRLRDTTQYEEWYNQPHRAPDLQKEAIYGLTEIL 204
Query: 196 REDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYS 255
RE+I+NAR+VANPGCYPTS+QLPL+PL++A LIQ RNIIID+KSGVSGAGRGAKEA+LY+
Sbjct: 205 RENIRNARVVANPGCYPTSVQLPLIPLLEAGLIQTRNIIIDSKSGVSGAGRGAKEASLYT 264
Query: 256 EIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVT 315
EIAEGI SYG+TRHRHVPEIEQGL+ + SKVTVSFTPHLMPM RGMQSTIYVEMA GV
Sbjct: 265 EIAEGINSYGITRHRHVPEIEQGLSDASKSKVTVSFTPHLMPMSRGMQSTIYVEMASGVN 324
Query: 316 IEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIPGRAIIISVIDNL 375
IEDLYQ L YE EEFV LL+K VP T NVRGSNYC MNVF DRIPGRAIIISVIDNL
Sbjct: 325 IEDLYQHLCSRYEDEEFVILLQKKAVPHTRNVRGSNYCFMNVFEDRIPGRAIIISVIDNL 384
Query: 376 VKGASGQALQNLNIMLGFPENTGLLYQPLFP 406
VKGASGQALQNLN+M+G+PEN GLL+Q LFP
Sbjct: 385 VKGASGQALQNLNLMMGYPENLGLLHQALFP 415
|
Source: Picea sitchensis Species: Picea sitchensis Genus: Picea Family: Pinaceae Order: Coniferales Class: Coniferopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357436985|ref|XP_003588768.1| N-acetyl-gamma-glutamyl-phosphate reductase [Medicago truncatula] gi|355477816|gb|AES59019.1| N-acetyl-gamma-glutamyl-phosphate reductase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust.
Identities = 294/406 (72%), Positives = 336/406 (82%), Gaps = 21/406 (5%)
Query: 1 MSAATFSSLCFSRGCFWKDEAKNSPRVMKGSGKVKISSIRGSATLPTKSLQVEDGKTQKS 60
MSA F S+ F+R ++S + + VK+S I+ S + S
Sbjct: 1 MSATAFRSIFFNR-------PRSSNKDLIKPQNVKLSPIKCS--------------IKSS 39
Query: 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMV 120
+ VR+G+LGASGYTG+EI+RLLANHP FG+ LMTADRKAGQ+I SVFPHL +QDLP ++
Sbjct: 40 QNNVRVGVLGASGYTGSEILRLLANHPQFGVALMTADRKAGQAISSVFPHLGTQDLPDLI 99
Query: 121 AVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIA 180
A+KDA+FS+VDAVFCCLPHGTTQEIIKGLPK LKIVDLSADFRLRDVSEYEEWYGQPH A
Sbjct: 100 AIKDANFSDVDAVFCCLPHGTTQEIIKGLPKHLKIVDLSADFRLRDVSEYEEWYGQPHRA 159
Query: 181 PDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSG 240
PDLQKEA+YGLTE+ RE+IKNARLVANPGCYPTSIQLPLVPLI+ANLIQ NII+DAKSG
Sbjct: 160 PDLQKEAIYGLTEVLREEIKNARLVANPGCYPTSIQLPLVPLIKANLIQTTNIIVDAKSG 219
Query: 241 VSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMIR 300
VSGAGR AKE L++E+ EG+ SYGVTRHRH PEIEQGL A SKVT+SFTPHL+PM R
Sbjct: 220 VSGAGRSAKENLLFTEVTEGMSSYGVTRHRHAPEIEQGLADAAGSKVTISFTPHLIPMSR 279
Query: 301 GMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPD 360
GMQSTIYVEMAPGV I+DL QL++SYE EEFV LLE GV+PRTH+V+GSNYCL NVFPD
Sbjct: 280 GMQSTIYVEMAPGVRIDDLRHQLQLSYEDEEFVVLLENGVIPRTHSVKGSNYCLFNVFPD 339
Query: 361 RIPGRAIIISVIDNLVKGASGQALQNLNIMLGFPENTGLLYQPLFP 406
RIPGRAIIISVIDNLVKGASGQALQNLN+++GFPEN GL Y PLFP
Sbjct: 340 RIPGRAIIISVIDNLVKGASGQALQNLNLIMGFPENLGLQYLPLFP 385
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 406 | ||||||
| TAIR|locus:2051980 | 401 | AT2G19940 [Arabidopsis thalian | 0.980 | 0.992 | 0.770 | 6.5e-161 | |
| TIGR_CMR|SPO_1876 | 342 | SPO_1876 "N-acetyl-gamma-gluta | 0.832 | 0.988 | 0.524 | 3.2e-88 | |
| TIGR_CMR|ECH_1017 | 346 | ECH_1017 "N-acetyl-gamma-gluta | 0.837 | 0.982 | 0.459 | 1e-82 | |
| TIGR_CMR|GSU_2874 | 346 | GSU_2874 "N-acetyl-gamma-gluta | 0.830 | 0.973 | 0.470 | 8.7e-79 | |
| TIGR_CMR|DET_1626 | 341 | DET_1626 "N-acetyl-gamma-gluta | 0.815 | 0.970 | 0.432 | 1.4e-69 | |
| TIGR_CMR|CJE_0275 | 342 | CJE_0275 "N-acetyl-gamma-gluta | 0.827 | 0.982 | 0.414 | 4.9e-69 | |
| TIGR_CMR|BA_4355 | 345 | BA_4355 "N-acetyl-gamma-glutam | 0.839 | 0.988 | 0.397 | 1.3e-68 | |
| TIGR_CMR|CHY_2265 | 337 | CHY_2265 "N-acetyl-gamma-gluta | 0.793 | 0.955 | 0.438 | 7.4e-66 | |
| UNIPROTKB|P63562 | 352 | argC "N-acetyl-gamma-glutamyl- | 0.802 | 0.926 | 0.375 | 6.5e-51 | |
| UNIPROTKB|P11446 | 334 | argC "N-acetylglutamylphosphat | 0.790 | 0.961 | 0.390 | 2.8e-50 |
| TAIR|locus:2051980 AT2G19940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1567 (556.7 bits), Expect = 6.5e-161, P = 6.5e-161
Identities = 313/406 (77%), Positives = 352/406 (86%)
Query: 2 SAATFSSLCFSRGCFWKDEAKNSPRVM-KGSGKVKISSIRGSATLPTKSLQVEDGKTQKS 60
+A+ FSS+ +GC++K E K RV K + ++ + S S + + S +V + K
Sbjct: 3 TASAFSSI---QGCWFKGERKI--RVADKRAKRLTLGSHVASPS--SMSFRVSASSSVKP 55
Query: 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMV 120
EK +RIGLLGASGYTGAEIVRLLANHP+F + LMTADRKAGQS+ SVFPHL +Q LPT+V
Sbjct: 56 EKDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLV 115
Query: 121 AVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIA 180
+VKDADFS VDAVFCCLPHGTTQEIIK LP +LKIVDLSADFRLR+++EYEEWYGQPH A
Sbjct: 116 SVKDADFSTVDAVFCCLPHGTTQEIIKELPTALKIVDLSADFRLRNIAEYEEWYGQPHKA 175
Query: 181 PDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSG 240
+LQKE VYGLTEI REDIK ARLVANPGCYPT+IQLPLVPL++ANLI++ NIIIDAKSG
Sbjct: 176 VELQKEVVYGLTEILREDIKKARLVANPGCYPTTIQLPLVPLLKANLIKHENIIIDAKSG 235
Query: 241 VSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMIR 300
VSGAGRGAKEANLYSEIAEGI SYGVTRHRHVPEIEQGL+ A SKVTVSFTPHLMPMIR
Sbjct: 236 VSGAGRGAKEANLYSEIAEGISSYGVTRHRHVPEIEQGLSDVAQSKVTVSFTPHLMPMIR 295
Query: 301 GMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPD 360
GMQSTIYVEMAPGV EDL+QQLK SYE EEFVK+L++GVVPRTHNVRGSNYC M+VFPD
Sbjct: 296 GMQSTIYVEMAPGVRTEDLHQQLKTSYEDEEFVKVLDEGVVPRTHNVRGSNYCHMSVFPD 355
Query: 361 RIPGRAIIISVIDNLVKGASGQALQNLNIMLGFPENTGLLYQPLFP 406
RIPGRAIIISVIDNLVKGASGQALQNLNIMLG+PE TGLL+QPLFP
Sbjct: 356 RIPGRAIIISVIDNLVKGASGQALQNLNIMLGYPETTGLLHQPLFP 401
|
|
| TIGR_CMR|SPO_1876 SPO_1876 "N-acetyl-gamma-glutamyl-phosphate reductase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 881 (315.2 bits), Expect = 3.2e-88, P = 3.2e-88
Identities = 180/343 (52%), Positives = 227/343 (66%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKD 124
+I +LGASGYTGAE+VRL+A HP I ++ +RKAGQS+ VFPHL DLP + + +
Sbjct: 4 KIAILGASGYTGAELVRLIAEHPNMEIVALSGERKAGQSMAEVFPHLRHLDLPVLCKIDE 63
Query: 125 ADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQ 184
DF+ VD FC LPH T+QE+I+ LP +LKIVDLSADFRLRD Y WYG H+A + Q
Sbjct: 64 IDFAGVDLCFCALPHKTSQEVIRALPATLKIVDLSADFRLRDPEAYRTWYGNEHVALEQQ 123
Query: 185 KEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGA 244
EAVYGLTE R+ I+ ARLVA GC + Q L PLI A +I II+D K VSGA
Sbjct: 124 AEAVYGLTEFYRDQIRTARLVAGTGCNAATGQYVLRPLIAAGVIDLDEIILDLKCAVSGA 183
Query: 245 GRGAKEANLYSEIAEGIYSYGVT-RHRHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQ 303
GR KE L++E++EG +Y V HRH+ E +Q + A V V FTPHL+P RG+
Sbjct: 184 GRSLKENLLHAELSEGANAYAVGGTHRHLGEFDQEFSALAGRPVQVQFTPHLIPANRGIL 243
Query: 304 STIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIP 363
+T YV G + ++Q L +Y E FV +L G P TH+VRGSN+C + V DRI
Sbjct: 244 ATTYVR---G-DAQTVFQTLAAAYADEPFVHVLPFGETPSTHHVRGSNHCHIGVTGDRIA 299
Query: 364 GRAIIISVIDNLVKGASGQALQNLNIMLGFPENTGLLYQPLFP 406
GRAI+I+ +DNL KG+SGQALQN N+MLG E TGL PLFP
Sbjct: 300 GRAIVIAALDNLTKGSSGQALQNANLMLGETETTGLTMAPLFP 342
|
|
| TIGR_CMR|ECH_1017 ECH_1017 "N-acetyl-gamma-glutamyl-phosphate reductase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
Score = 829 (296.9 bits), Expect = 1.0e-82, P = 1.0e-82
Identities = 159/346 (45%), Positives = 236/346 (68%)
Query: 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVA- 121
QV + ++GA+GY G E+VRLL +HP IK + A + +G+ + S + H+ D+ ++
Sbjct: 4 QVSVAVVGATGYVGVELVRLLLSHPMVKIKYLCATQSSGKLLSSNYFHISQDDISVNISS 63
Query: 122 VKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAP 181
D D S VD VF CLPHGT+ E+++ + ++I+DLSADFR++D Y++WYG H P
Sbjct: 64 FDDIDLSKVDVVFLCLPHGTSSEVVRKIHDVVRIIDLSADFRIKDAEVYKQWYGS-HCCP 122
Query: 182 DLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGV 241
DL ++ VYGLTEI EDI+ +R +A PGCYPTS+ +PL PL++ LI+ + II+DAKSGV
Sbjct: 123 DLVRDFVYGLTEIYWEDIQRSRFIACPGCYPTSVLIPLFPLLRLCLIKSQGIIVDAKSGV 182
Query: 242 SGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSK--VTVSFTPHLMPMI 299
SGAGR K+ L+ E+ + I SY ++ HRH+PEIEQ L FA+ + + + F P+L+P+
Sbjct: 183 SGAGRSVKQDKLFCEVYDVIKSYKISDHRHIPEIEQELC-FAACREDINLQFVPNLIPVK 241
Query: 300 RGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFP 359
RGM S+IY+E+ GV++ D+ + L + Y+ FV + E+ + T +V G+NYC + VFP
Sbjct: 242 RGMMSSIYLELEEGVSLTDVREALLLFYKDSSFVFIDEEKAMT-TRSVVGTNYCYLGVFP 300
Query: 360 DRIPGRAIIISVIDNLVKGASGQALQNLNIMLGFPENTGLLYQPLF 405
R+P II+SVIDNL+KGA+GQA+QN N+M+ + E L P F
Sbjct: 301 GRVPNTIIIMSVIDNLLKGAAGQAVQNFNVMMSYDEKIALSNIPYF 346
|
|
| TIGR_CMR|GSU_2874 GSU_2874 "N-acetyl-gamma-glutamyl-phosphate reductase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 792 (283.9 bits), Expect = 8.7e-79, P = 8.7e-79
Identities = 165/351 (47%), Positives = 227/351 (64%)
Query: 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHL---ISQDLPTMV 120
+++ ++GASGYTG E++R+L HP + +T+++ AG+ + +FP L +Q L +
Sbjct: 2 LKVAVVGASGYTGVELLRILHCHPEVAVTCITSEQSAGKPVSDLFPSLRGRYAQVLENLE 61
Query: 121 AVKDADFSNVDAVFCCLPHGTTQEIIKGLPK-SLKIVDLSADFRLRDVSEYEEWYGQPHI 179
++ A+ D +F LPH E++ K +++DLSAD+R D + YE+WY +PH+
Sbjct: 62 PIRVAE--KADIIFTALPHKAAMEVVPTFLKLGKRVIDLSADYRFNDAATYEQWY-EPHM 118
Query: 180 APDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKS 239
P L +AVYGL E+ R +K A+LVANPGCYPTS+ L L PL++ LI+ II D+ S
Sbjct: 119 NPHLLPKAVYGLPEVRRAAVKGAKLVANPGCYPTSVILGLQPLLKHKLIETAGIISDSAS 178
Query: 240 GVSGAGRGAKEANLYSEIAEGIYSYGVTR-HRHVPEIEQGLTGFASSKVTVSFTPHLMPM 298
GVSGAGRGAK NLY E+ EG +YGV HRH PE+EQ L+ A ++T++FTPHL PM
Sbjct: 179 GVSGAGRGAKVDNLYCEVNEGFKAYGVGGVHRHTPEMEQELSLLADERITITFTPHLAPM 238
Query: 299 IRGMQSTIYVEM-APGVTIE--DLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLM 355
RG+ STIY + P T E LY + Y E FV++L G VP T +VRGSN+C +
Sbjct: 239 DRGILSTIYGRLLTPATTAELAGLYAEF---YGGEPFVRVLPAGGVPSTAHVRGSNFCDI 295
Query: 356 NVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMLGFPENTGLLYQPLFP 406
V D+ GR I++S IDNLVKGASGQA+QN+NIM G PE GL L P
Sbjct: 296 GVVVDQRTGRVIVVSAIDNLVKGASGQAVQNMNIMCGLPEGLGLEGLALVP 346
|
|
| TIGR_CMR|DET_1626 DET_1626 "N-acetyl-gamma-glutamyl-phosphate reductase" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
Identities = 147/340 (43%), Positives = 210/340 (61%)
Query: 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVA 121
K+ + G++ +GY G E+ R+LA+HP + +T AG+ + FP+L S DLP +
Sbjct: 2 KKYKAGIINVTGYAGLELARILASHPSVELCSVTGRSLAGKKLSDAFPYLHSLDLPITES 61
Query: 122 VKDADFSNVDAVFCCLPHGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIA 180
++ VD F LPH ++ L K ++++D+SADFRL+D Y+ WYG H
Sbjct: 62 LE----GEVDIAFMALPHKEGASLVPDLLSKGMRVIDISADFRLKDPPLYQAWYGFEHPC 117
Query: 181 PDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSG 240
P+L EAVYGL E+ R+DI +ARLVANPGCYPTS L L P + +LI+ N I+DAKSG
Sbjct: 118 PELLAEAVYGLPELKRKDIASARLVANPGCYPTSAILGLAPAFKMDLIE-PNAIVDAKSG 176
Query: 241 VSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVT-VSFTPHLMPMI 299
+SG+GR N++ E +E + +Y + HRH PEI Q L+ + V+F PHL+PM
Sbjct: 177 LSGSGRTPTAKNIFCEASEDVCAYSIGTHRHQPEIVQELSLVGGGVIPRVTFCPHLVPMS 236
Query: 300 RGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFP 359
RG+ S+ Y + VT E++ + + Y+ E FVK+ + P T RG+N C +
Sbjct: 237 RGILSSAYARLKQPVTDEEVKEIYRRFYKDEPFVKITAEP--PHTRYTRGTNMCFIYPVV 294
Query: 360 DRIPGRAIIISVIDNLVKGASGQALQNLNIMLGFPENTGL 399
D + R I+IS IDNLVKGA+GQA+QN+NIMLG E+TGL
Sbjct: 295 DALNERLIVISCIDNLVKGAAGQAVQNMNIMLGLSEDTGL 334
|
|
| TIGR_CMR|CJE_0275 CJE_0275 "N-acetyl-gamma-glutamyl-phosphate reductase" [Campylobacter jejuni RM1221 (taxid:195099)] | Back alignment and assigned GO terms |
|---|
Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
Identities = 141/340 (41%), Positives = 212/340 (62%)
Query: 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAV 122
++++G+LGASGY G E+VR+L NHP I + + GQ+ ++P+ L
Sbjct: 2 KIKVGILGASGYAGNELVRILLNHPKVEISYLGSSSSVGQNYQDLYPNT---PLNLCFEN 58
Query: 123 KDADFSNVDAVFCCLPHGTTQEII-KGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAP 181
K+ D +D +F PH + +++ + L K +KI+DLSADFRL++ +YE WY H
Sbjct: 59 KNLDELELDLLFLATPHEFSAKLLNENLLKKMKIIDLSADFRLKNPKDYELWYKFTHPNQ 118
Query: 182 DLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGV 241
+L + AVYGL E+ +E+IK A LVANPGCY T L L PL + +I + ++IIDAKSGV
Sbjct: 119 ELLQNAVYGLCELYKEEIKKASLVANPGCYTTCSILSLYPLFKEKIIDFSSVIIDAKSGV 178
Query: 242 SGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMIRG 301
SGAGR AK NL+ E+ E I +Y + HRH PEIE+ L+ A K+T+ FTPHL+ M RG
Sbjct: 179 SGAGRSAKVENLFCEVNENIKAYNLALHRHTPEIEEHLSYAAKKKITLQFTPHLVSMQRG 238
Query: 302 MQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDR 361
+ + Y + + +D+ Y++ +F++LL +P+T V+ SN+ +N D+
Sbjct: 239 ILISAYANLKEDLQEQDIRDIYTKYYQNNKFIRLLPPQSLPQTRWVKSSNFADINFSVDQ 298
Query: 362 IPGRAIIISVIDNLVKGASGQALQNLNIMLGFPENTGLLY 401
R I++ IDNL+KGA+GQA+QN+N+M F E+ GL +
Sbjct: 299 RTKRVIVLGAIDNLIKGAAGQAVQNMNLMFDFDEDEGLKF 338
|
|
| TIGR_CMR|BA_4355 BA_4355 "N-acetyl-gamma-glutamyl-phosphate reductase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
Identities = 137/345 (39%), Positives = 216/345 (62%)
Query: 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTM--VA 121
+++ ++GA+GY G E++RLL HPYF I + + + G+ I +V+PH + + T+ +
Sbjct: 1 MKVAIIGATGYGGIELIRLLEQHPYFSIASLHSFSQVGECITNVYPHFQNVLVHTLQEID 60
Query: 122 VKDADFSNVDAVFCCLPHGTTQEII-KGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIA 180
V++ + + VF P G + E+ K L LK++DLS DFR++D YE+WY +
Sbjct: 61 VEEIE-KEAEIVFLATPAGVSAELTPKLLAVGLKVIDLSGDFRMKDPFIYEQWYKRAAAK 119
Query: 181 PDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSG 240
+ +EAVYGL+E R +I+ A L+ANPGC+ T+ L ++PL+++ +I+ +IIIDAKSG
Sbjct: 120 EGVLREAVYGLSEWKRSEIQKANLIANPGCFATAALLAILPLVRSGIIEEDSIIIDAKSG 179
Query: 241 VSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMIR 300
VSGAG+ + E+ + + Y V H+H+PEIEQ L + ++F+ HL+P+ R
Sbjct: 180 VSGAGKTPTTMTHFPELYDNLRIYKVNEHQHIPEIEQMLAEWNRETKPITFSTHLIPISR 239
Query: 301 GMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPD 360
G+ T+Y ++ + IE L Q + +YE F+++ +G P VRGSNYC M + D
Sbjct: 240 GIMVTLYAKVKREMEIEQLQQLYEEAYEQSAFIRIRMQGEFPSPKEVRGSNYCDMGIAYD 299
Query: 361 RIPGRAIIISVIDNLVKGASGQALQNLNIMLGFPENTGLLYQPLF 405
GR I+SVIDN++KGA+GQA+QN NI+ G E TGL + PL+
Sbjct: 300 ERTGRVTIVSVIDNMMKGAAGQAIQNANIVAGLEETTGLQHMPLY 344
|
|
| TIGR_CMR|CHY_2265 CHY_2265 "N-acetyl-gamma-glutamyl-phosphate reductase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
Identities = 151/344 (43%), Positives = 219/344 (63%)
Query: 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRKAGQSIGSVFPHLISQDLPTMVA- 121
+++ ++GA+GYTGAE++RLL+ HP G+ L + G+ + V H + V
Sbjct: 1 MKVAVVGATGYTGAELIRLLSMHPEVTGLFLFSR----GEEV-EVEKHFLGLGFAGKVKP 55
Query: 122 VKDADFSNVDAVFCCLPHGTT----QEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQP 177
+++ N D F LPHG + QE+I+ + ++++DLSADFRL + Y++WYG P
Sbjct: 56 LEELSGFNPDFAFLALPHGESGRYAQELIR---RGVRVIDLSADFRL-PLEVYDKWYG-P 110
Query: 178 HIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDA 237
H AP+L + AVYGLTE E IK ARL+ANPGCYPT+ L ++PL + +L+Q II D
Sbjct: 111 HPAPELLEIAVYGLTEYFSEKIKTARLIANPGCYPTAFLLAVLPLAEKDLLQ-GVIISDM 169
Query: 238 KSGVSGAGRGAKEANLYSEIAEGIYSYGVT-RHRHVPEIEQGLTGFASSKVTVSFTPHLM 296
KSGV+GAGR AK L+ E+AE YGV +HRH+PE+E L FA + V FTPHL+
Sbjct: 170 KSGVTGAGRAAKRETLFGEVAENFRPYGVGGKHRHLPEMENFLNMFAKG-LRVIFTPHLV 228
Query: 297 PMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMN 356
PM RG+ TIY+ + V++E+L + Y+ + F+K+L G +P T V G+N L+
Sbjct: 229 PMKRGILGTIYLNLTTDVSLEELRKIYLAKYQDKPFIKILPDGQLPETRAVYGTNNALIA 288
Query: 357 VFPDRIPGRAIIISV-IDNLVKGASGQALQNLNIMLGFPENTGL 399
V ++ PG +I++V IDNL KGA+GQA+QN+N+M G E GL
Sbjct: 289 V--NKEPGGMVIVTVAIDNLGKGAAGQAVQNMNLMAGLDETCGL 330
|
|
| UNIPROTKB|P63562 argC "N-acetyl-gamma-glutamyl-phosphate reductase" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
Identities = 129/344 (37%), Positives = 184/344 (53%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFG-----IKLMTADRKAGQSIGSVFPHLISQDLPTM 119
++ + GASGY G EI+RLL HP + I +TA AG ++G PHL +
Sbjct: 11 KVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVV 70
Query: 120 VAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHI 179
+ A DAVF LPHG + + + L I+D ADFRL D + +E +YG H
Sbjct: 71 EPTEAAVLGGHDAVFLALPHGHSAVLAQQLSPETLIIDCGADFRLTDAAVWERFYGSSHA 130
Query: 180 APDLQKEAVYGLTEI--SREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDA 237
YGL E+ +R+ ++ R +A PGCYPT+ L L P + A+LI+ ++ A
Sbjct: 131 G-----SWPYGLPELPGARDQLRGTRRIAVPGCYPTAALLALFPALAADLIEPAVTVV-A 184
Query: 238 KSGVSGAGRGAKEANLYSEIAEGIYSYGVTR-HRHVPEIEQGLTGFASSKVTVSFTPHLM 296
SG SGAGR A L +E+ +Y + HRH PEI QGL V+VSFTP L+
Sbjct: 185 VSGTSGAGRAATTDLLGAEVIGSARAYNIAGVHRHTPEIAQGLRAVTDRDVSVSFTPVLI 244
Query: 297 PMIRGMQSTIYVEM-APGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLM 355
P RG+ +T +P + Y++ +Y E F+ L+ +G +PRT V GSN +
Sbjct: 245 PASRGILATCTARTRSPLSQLRAAYEK---AYHAEPFIYLMPEGQLPRTGAVIGSNAAHI 301
Query: 356 NVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMLGFPENTGL 399
V D + I+ IDNLVKG +G A+Q++N+ LG+PE GL
Sbjct: 302 AVAVDEDAQTFVAIAAIDNLVKGTAGAAVQSMNLALGWPETDGL 345
|
|
| UNIPROTKB|P11446 argC "N-acetylglutamylphosphate reductase" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 133/341 (39%), Positives = 186/341 (54%)
Query: 68 LLGASGYTGAEIVRLLANHPYFGIKLMTADRK---AGQSIGSVFPHLIS-QDLPTMVAVK 123
++GASGY GAE+V + HP+ I +T + AG+ I + P L DLP
Sbjct: 6 IVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSD 65
Query: 124 DADFS-NVDAVFCCLPHGTTQEII-KGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAP 181
++FS VD VF H + ++ + L + DLS FR+ D + YE++YG H P
Sbjct: 66 ISEFSPGVDVVFLATAHEVSHDLAPQFLEAGCVVFDLSGAFRVNDATFYEKYYGFTHQYP 125
Query: 182 DLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNI-IIDAKSG 240
+L ++A YGL E +K A L+A PGCYPT+ QL L PLI A+L+ +I+A SG
Sbjct: 126 ELLEQAAYGLAEWCGNKLKEANLIAVPGCYPTAAQLALKPLIDADLLDLNQWPVINATSG 185
Query: 241 VSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMIR 300
VSGAGR A +N + E++ + YGV HRH PEI L G V FTPHL R
Sbjct: 186 VSGAGRKAAISNSFCEVS--LQPYGVFTHRHQPEIATHL-G-----ADVIFTPHLGNFPR 237
Query: 301 GMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPD 360
G+ TI + GVT + Q L+ +Y H+ V+L +KGV P NV G +C +
Sbjct: 238 GILETITCRLKSGVTQAQVAQVLQQAYAHKPLVRLYDKGV-PALKNVVGLPFCDIGF--- 293
Query: 361 RIPGR-AIIISVIDNLVKGASGQALQNLNIMLGFPENTGLL 400
+ G II++ DNL+KGA+ QA+Q NI G+ E L+
Sbjct: 294 AVQGEHLIIVATEDNLLKGAAAQAVQCANIRFGYAETQSLI 334
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| C1DHY0 | ARGC_AZOVD | 1, ., 2, ., 1, ., 3, 8 | 0.4450 | 0.8374 | 0.9883 | yes | no |
| Q5HA98 | ARGC_EHRRW | 1, ., 2, ., 1, ., 3, 8 | 0.4695 | 0.8325 | 0.9740 | yes | no |
| C3K2Z7 | ARGC_PSEFS | 1, ., 2, ., 1, ., 3, 8 | 0.4508 | 0.8374 | 0.9883 | yes | no |
| A9KHN1 | ARGC_CLOPH | 1, ., 2, ., 1, ., 3, 8 | 0.4403 | 0.8275 | 0.9710 | yes | no |
| A5GAY8 | ARGC_GEOUR | 1, ., 2, ., 1, ., 3, 8 | 0.4913 | 0.8374 | 0.9826 | yes | no |
| Q748X6 | ARGC_GEOSL | 1, ., 2, ., 1, ., 3, 8 | 0.4655 | 0.8374 | 0.9826 | yes | no |
| Q9LA02 | ARGC_RHOCB | 1, ., 2, ., 1, ., 3, 8 | 0.5072 | 0.8325 | 0.9883 | yes | no |
| B1JE24 | ARGC_PSEPW | 1, ., 2, ., 1, ., 3, 8 | 0.4479 | 0.8374 | 0.9883 | yes | no |
| B6JHG4 | ARGC_OLICO | 1, ., 2, ., 1, ., 3, 8 | 0.5549 | 0.8325 | 0.9602 | yes | no |
| Q82UK2 | ARGC_NITEU | 1, ., 2, ., 1, ., 3, 8 | 0.4563 | 0.8374 | 0.9941 | yes | no |
| A1ATK5 | ARGC_PELPD | 1, ., 2, ., 1, ., 3, 8 | 0.4755 | 0.8448 | 0.9913 | yes | no |
| A1B2K9 | ARGC_PARDP | 1, ., 2, ., 1, ., 3, 8 | 0.4869 | 0.8325 | 0.9883 | yes | no |
| B5EFN1 | ARGC_GEOBB | 1, ., 2, ., 1, ., 3, 8 | 0.4744 | 0.8275 | 0.9710 | yes | no |
| Q3A3B8 | ARGC_PELCD | 1, ., 2, ., 1, ., 3, 8 | 0.4898 | 0.8423 | 0.9913 | yes | no |
| Q3SF19 | ARGC_THIDA | 1, ., 2, ., 1, ., 3, 8 | 0.4331 | 0.8374 | 0.9941 | yes | no |
| Q6AV34 | ARGC_ORYSJ | 1, ., 2, ., 1, ., 3, 8 | 0.7265 | 0.9679 | 0.9469 | yes | no |
| Q3J277 | ARGC_RHOS4 | 1, ., 2, ., 1, ., 3, 8 | 0.5087 | 0.8300 | 0.9853 | yes | no |
| C1D5B2 | ARGC_LARHH | 1, ., 2, ., 1, ., 3, 8 | 0.4331 | 0.8374 | 0.9941 | yes | no |
| Q1GHL0 | ARGC_RUEST | 1, ., 2, ., 1, ., 3, 8 | 0.5116 | 0.8300 | 0.9853 | yes | no |
| Q3K5W5 | ARGC_PSEPF | 1, ., 2, ., 1, ., 3, 8 | 0.4450 | 0.8374 | 0.9883 | yes | no |
| Q2GFI0 | ARGC_EHRCR | 1, ., 2, ., 1, ., 3, 8 | 0.4595 | 0.8374 | 0.9826 | yes | no |
| Q1IFY8 | ARGC_PSEE4 | 1, ., 2, ., 1, ., 3, 8 | 0.4492 | 0.8399 | 0.9912 | yes | no |
| Q02TA4 | ARGC_PSEAB | 1, ., 2, ., 1, ., 3, 8 | 0.4450 | 0.8374 | 0.9883 | yes | no |
| B0KK45 | ARGC_PSEPG | 1, ., 2, ., 1, ., 3, 8 | 0.4434 | 0.8399 | 0.9912 | yes | no |
| Q7NRT5 | ARGC_CHRVO | 1, ., 2, ., 1, ., 3, 8 | 0.4418 | 0.8374 | 0.9941 | yes | no |
| A0L482 | ARGC_MAGSM | 1, ., 2, ., 1, ., 3, 8 | 0.4772 | 0.8374 | 0.9742 | yes | no |
| Q0AHZ8 | ARGC_NITEC | 1, ., 2, ., 1, ., 3, 8 | 0.4622 | 0.8374 | 0.9941 | yes | no |
| Q3YR04 | ARGC_EHRCJ | 1, ., 2, ., 1, ., 3, 8 | 0.4610 | 0.8349 | 0.9797 | yes | no |
| A3PK36 | ARGC_RHOS1 | 1, ., 2, ., 1, ., 3, 8 | 0.5058 | 0.8300 | 0.9853 | yes | no |
| Q163W4 | ARGC_ROSDO | 1, ., 2, ., 1, ., 3, 8 | 0.5 | 0.8300 | 0.9853 | yes | no |
| A6TTJ3 | ARGC_ALKMQ | 1, ., 2, ., 1, ., 3, 8 | 0.4550 | 0.8448 | 0.9913 | yes | no |
| Q5LS92 | ARGC_RUEPO | 1, ., 2, ., 1, ., 3, 8 | 0.5218 | 0.8325 | 0.9883 | yes | no |
| A6UZG3 | ARGC_PSEA7 | 1, ., 2, ., 1, ., 3, 8 | 0.4450 | 0.8374 | 0.9883 | yes | no |
| A4WQY7 | ARGC_RHOS5 | 1, ., 2, ., 1, ., 3, 8 | 0.5087 | 0.8300 | 0.9853 | yes | no |
| Q93Z70 | ARGC_ARATH | 1, ., 2, ., 1, ., 3, 8 | 0.7703 | 0.9827 | 0.9950 | yes | no |
| Q39Y23 | ARGC_GEOMG | 1, ., 2, ., 1, ., 3, 8 | 0.4942 | 0.8374 | 0.9826 | yes | no |
| B9M6W2 | ARGC_GEOSF | 1, ., 2, ., 1, ., 3, 8 | 0.4814 | 0.8300 | 0.9739 | yes | no |
| Q28PV9 | ARGC_JANSC | 1, ., 2, ., 1, ., 3, 8 | 0.5014 | 0.8325 | 0.9883 | yes | no |
| C6E4S6 | ARGC_GEOSM | 1, ., 2, ., 1, ., 3, 8 | 0.4787 | 0.8300 | 0.9739 | yes | no |
| A0LIV2 | ARGC_SYNFM | 1, ., 2, ., 1, ., 3, 8 | 0.4782 | 0.8399 | 0.9912 | yes | no |
| B1I1C5 | ARGC_DESAP | 1, ., 2, ., 1, ., 3, 8 | 0.4545 | 0.8275 | 0.9710 | yes | no |
| Q5FGD5 | ARGC_EHRRG | 1, ., 2, ., 1, ., 3, 8 | 0.4695 | 0.8325 | 0.9740 | yes | no |
| B7V620 | ARGC_PSEA8 | 1, ., 2, ., 1, ., 3, 8 | 0.4450 | 0.8374 | 0.9883 | yes | no |
| B9KSY0 | ARGC_RHOSK | 1, ., 2, ., 1, ., 3, 8 | 0.5116 | 0.8300 | 0.9853 | yes | no |
| A4J167 | ARGC_DESRM | 1, ., 2, ., 1, ., 3, 8 | 0.4704 | 0.8201 | 0.9624 | yes | no |
| Q2RRM4 | ARGC_RHORT | 1, ., 2, ., 1, ., 3, 8 | 0.5828 | 0.8497 | 0.9801 | yes | no |
| Q2YBK4 | ARGC_NITMU | 1, ., 2, ., 1, ., 3, 8 | 0.4418 | 0.8374 | 0.9941 | yes | no |
| Q9I5Q9 | ARGC_PSEAE | 1, ., 2, ., 1, ., 3, 8 | 0.4479 | 0.8374 | 0.9883 | yes | no |
| A4XZB4 | ARGC_PSEMY | 1, ., 2, ., 1, ., 3, 8 | 0.4479 | 0.8374 | 0.9883 | yes | no |
| Q6ANM0 | ARGC_DESPS | 1, ., 2, ., 1, ., 3, 8 | 0.4586 | 0.8300 | 0.9739 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00036526001 | RecName- Full=N-acetyl-gamma-glutamyl-phosphate reductase; EC=1.2.1.38; (398 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| GSVIVG00032389001 | SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (351 aa) | • | • | • | • | • | • | 0.999 | |||
| GSVIVG00035727001 | SubName- Full=Chromosome undetermined scaffold_80, whole genome shotgun sequence; (467 aa) | • | • | • | • | • | 0.996 | ||||
| GSVIVG00033255001 | SubName- Full=Chromosome chr9 scaffold_65, whole genome shotgun sequence; (463 aa) | • | • | • | • | • | 0.996 | ||||
| GSVIVG00015101001 | SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (525 aa) | • | • | • | • | 0.984 | |||||
| GSVIVG00014587001 | SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (261 aa) | • | • | • | 0.981 | ||||||
| GSVIVG00017913001 | SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (430 aa) | • | • | • | 0.977 | ||||||
| GSVIVG00034896001 | SubName- Full=Chromosome chr4 scaffold_73, whole genome shotgun sequence; (407 aa) | • | • | • | 0.975 | ||||||
| GSVIVG00023053001 | SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (430 aa) | • | • | • | • | 0.966 | |||||
| GSVIVG00028327001 | SubName- Full=Chromosome chr10 scaffold_43, whole genome shotgun sequence; (416 aa) | • | • | • | • | 0.928 | |||||
| GSVIVG00012224001 | SubName- Full=Putative uncharacterized protein (Chromosome undetermined scaffold_359, whole gen [...] (253 aa) | • | • | 0.893 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 406 | |||
| PLN02968 | 381 | PLN02968, PLN02968, Probable N-acetyl-gamma-glutam | 0.0 | |
| PRK00436 | 343 | PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate | 0.0 | |
| TIGR01850 | 346 | TIGR01850, argC, N-acetyl-gamma-glutamyl-phosphate | 0.0 | |
| COG0002 | 349 | COG0002, ArgC, Acetylglutamate semialdehyde dehydr | 1e-150 | |
| PRK11863 | 313 | PRK11863, PRK11863, N-acetyl-gamma-glutamyl-phosph | 1e-42 | |
| smart00859 | 123 | smart00859, Semialdhyde_dh, Semialdehyde dehydroge | 7e-35 | |
| TIGR01851 | 310 | TIGR01851, argC_other, N-acetyl-gamma-glutamyl-pho | 2e-33 | |
| pfam01118 | 121 | pfam01118, Semialdhyde_dh, Semialdehyde dehydrogen | 2e-31 | |
| pfam02774 | 167 | pfam02774, Semialdhyde_dhC, Semialdehyde dehydroge | 4e-21 | |
| TIGR00978 | 341 | TIGR00978, asd_EA, aspartate-semialdehyde dehydrog | 1e-20 | |
| PRK08664 | 349 | PRK08664, PRK08664, aspartate-semialdehyde dehydro | 4e-16 | |
| COG0136 | 334 | COG0136, Asd, Aspartate-semialdehyde dehydrogenase | 6e-16 | |
| TIGR01296 | 338 | TIGR01296, asd_B, aspartate-semialdehyde dehydroge | 4e-07 | |
| PLN02383 | 344 | PLN02383, PLN02383, aspartate semialdehyde dehydro | 5e-06 | |
| cd05259 | 282 | cd05259, PCBER_SDR_a, phenylcoumaran benzylic ethe | 2e-04 | |
| PRK06728 | 347 | PRK06728, PRK06728, aspartate-semialdehyde dehydro | 3e-04 | |
| cd05250 | 214 | cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical | 5e-04 | |
| PRK14874 | 334 | PRK14874, PRK14874, aspartate-semialdehyde dehydro | 6e-04 |
| >gnl|CDD|215522 PLN02968, PLN02968, Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Score = 664 bits (1716), Expect = 0.0
Identities = 285/370 (77%), Positives = 317/370 (85%)
Query: 37 SSIRGSATLPTKSLQVEDGKTQKSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA 96
+ R S T +S+ + KSE++ RI +LGASGYTGAE+ RLLANHP F I +MTA
Sbjct: 12 LASRASVTSSPQSVVSSASSSVKSEEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTA 71
Query: 97 DRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIV 156
DRKAGQS GSVFPHLI+QDLP +VAVKDADFS+VDAVFCCLPHGTTQEIIK LPK LKIV
Sbjct: 72 DRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHGTTQEIIKALPKDLKIV 131
Query: 157 DLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQ 216
DLSADFRLRD++EYEEWYG PH AP+LQKEAVYGLTE+ RE+IK+ARLVANPGCYPT IQ
Sbjct: 132 DLSADFRLRDIAEYEEWYGHPHRAPELQKEAVYGLTELQREEIKSARLVANPGCYPTGIQ 191
Query: 217 LPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIE 276
LPLVPL++A LI+ NIIIDAKSGVSGAGRGAKEANLY+EIAEGI +YGVTRHRHVPEIE
Sbjct: 192 LPLVPLVKAGLIEPDNIIIDAKSGVSGAGRGAKEANLYTEIAEGIGAYGVTRHRHVPEIE 251
Query: 277 QGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLL 336
QGL A SKVT SFTPHLMPM RGMQST+YV APGVT EDL+Q LK YE EEFVK+L
Sbjct: 252 QGLADAAGSKVTPSFTPHLMPMSRGMQSTVYVHYAPGVTAEDLHQHLKERYEGEEFVKVL 311
Query: 337 EKGVVPRTHNVRGSNYCLMNVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMLGFPEN 396
E+G VP T +VRGSNYC +NVF DRIPGRAIIISVIDNLVKGASGQA+QNLN+M+G PE
Sbjct: 312 ERGAVPHTDHVRGSNYCELNVFADRIPGRAIIISVIDNLVKGASGQAVQNLNLMMGLPET 371
Query: 397 TGLLYQPLFP 406
TGLL QPLFP
Sbjct: 372 TGLLQQPLFP 381
|
Length = 381 |
| >gnl|CDD|234761 PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Score = 515 bits (1330), Expect = 0.0
Identities = 172/346 (49%), Positives = 228/346 (65%), Gaps = 4/346 (1%)
Query: 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVA 121
+++G++GASGYTG E++RLL NHP I +T+ AG+ + V PHL +
Sbjct: 1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEP 60
Query: 122 VKDADFSNVDAVFCCLPHGTTQEIIKGLPKS-LKIVDLSADFRLRDVSEYEEWYGQPHIA 180
+ + D VF LPHG + ++ L ++ +K++DLSADFRL+D YE+WYG H A
Sbjct: 61 LDPEILAGADVVFLALPHGVSMDLAPQLLEAGVKVIDLSADFRLKDPEVYEKWYGFEHAA 120
Query: 181 PDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSG 240
P+L KEAVYGL E++RE+IK ARL+ANPGCYPT+ L L PL++A LI +IIIDAKSG
Sbjct: 121 PELLKEAVYGLPELNREEIKGARLIANPGCYPTASLLALAPLLKAGLIDPDSIIIDAKSG 180
Query: 241 VSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMIR 300
VSGAGR A E L+SE+ E + Y V HRH PEIEQ L+ A VSFTPHL+PM R
Sbjct: 181 VSGAGRKASEGTLFSEVNENLRPYKVGGHRHTPEIEQELSALAG---EVSFTPHLVPMTR 237
Query: 301 GMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPD 360
G+ +TIY + VT ED+ + Y E FV++L +G P T +VRGSN+C + D
Sbjct: 238 GILATIYARLKDPVTAEDVRAAYEEFYADEPFVRVLPEGQYPETKSVRGSNFCDIGFAVD 297
Query: 361 RIPGRAIIISVIDNLVKGASGQALQNLNIMLGFPENTGLLYQPLFP 406
GR +++S IDNLVKGA+GQA+QN+NIM G E TGL PL+P
Sbjct: 298 ERTGRLVVVSAIDNLVKGAAGQAVQNMNIMFGLDETTGLPLIPLYP 343
|
Length = 343 |
| >gnl|CDD|233597 TIGR01850, argC, N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Score = 511 bits (1319), Expect = 0.0
Identities = 170/346 (49%), Positives = 228/346 (65%), Gaps = 3/346 (0%)
Query: 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAV 122
+++ ++GASGYTG E++RLL NHP I + + R+ AG+ + V PHL + +
Sbjct: 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPI 60
Query: 123 KDADFS-NVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIA 180
+ + D VF LPHG + E+ L +K++DLSADFRL+D YE+WYG H
Sbjct: 61 DVEEILEDADVVFLALPHGVSAELAPELLAAGVKVIDLSADFRLKDPELYEKWYGFEHAG 120
Query: 181 PDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSG 240
P+L ++AVYGL E+ RE+IK ARL+ANPGCYPT+ L L PL++ LI +II+DAKSG
Sbjct: 121 PELLQKAVYGLPELHREEIKGARLIANPGCYPTATLLALAPLLKEGLIDPTSIIVDAKSG 180
Query: 241 VSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMIR 300
VSGAGR A EAN + E+ E + Y VT HRH PEIEQ L A KV VSFTPHL+PM R
Sbjct: 181 VSGAGRKASEANHFPEVNENLRPYKVTGHRHTPEIEQELGRLAGGKVKVSFTPHLVPMTR 240
Query: 301 GMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPD 360
G+ +TIY ++ G+T EDL + Y E FV++L +G P T V GSN+C + D
Sbjct: 241 GILATIYAKLKDGLTEEDLRALYEEFYADEPFVRVLPEGGYPSTKAVIGSNFCDIGFAVD 300
Query: 361 RIPGRAIIISVIDNLVKGASGQALQNLNIMLGFPENTGLLYQPLFP 406
GR +++S IDNLVKGA+GQA+QN+N+M GF E TGL + PL+P
Sbjct: 301 ERTGRVVVVSAIDNLVKGAAGQAVQNMNLMFGFDETTGLPFPPLYP 346
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons [Amino acid biosynthesis, Glutamate family]. Length = 346 |
| >gnl|CDD|223081 COG0002, ArgC, Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 427 bits (1101), Expect = e-150
Identities = 162/347 (46%), Positives = 229/347 (65%), Gaps = 4/347 (1%)
Query: 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLIS-QDLP-TMVA 121
+++G++GASGYTG E++RLLA HP + L+++ +AG+ + V P+L DLP +
Sbjct: 3 IKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTID 62
Query: 122 VKDADFSNVDAVFCCLPHGTTQEII-KGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIA 180
+ + D VF LPHG + E++ + L K++DLSADFRL+D YE+WYG H
Sbjct: 63 PEKIELDECDVVFLALPHGVSAELVPELLEAGCKVIDLSADFRLKDPEVYEKWYGFTHAG 122
Query: 181 PDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQY-RNIIIDAKS 239
P+L ++AVYGL E+ RE I+ A+L+ANPGCYPT+ L L PL++A L+ I+DAKS
Sbjct: 123 PELLEDAVYGLPELHREKIRGAKLIANPGCYPTAAILALAPLVKAGLLDPDSPPIVDAKS 182
Query: 240 GVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMI 299
GVSGAGR A N + E+ + + YG+T HRH PEIEQ L A KV V FTPHL P +
Sbjct: 183 GVSGAGRKASVKNHFPEVNDSLRPYGLTGHRHTPEIEQHLGRLAGRKVPVIFTPHLGPFV 242
Query: 300 RGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFP 359
RG+ +TIY+++ VT+E+L+ + Y E FV+++ +G P T V GSN+C +
Sbjct: 243 RGILATIYLKLKDLVTLEELHAAYEEFYAGEPFVRVVPEGGYPDTKAVAGSNFCDIGFAV 302
Query: 360 DRIPGRAIIISVIDNLVKGASGQALQNLNIMLGFPENTGLLYQPLFP 406
D GR +++S IDNLVKGA+GQA+QN+NIM GF E GL + PL+P
Sbjct: 303 DERTGRVVVVSAIDNLVKGAAGQAVQNMNIMFGFDETLGLPFVPLYP 349
|
Length = 349 |
| >gnl|CDD|237004 PRK11863, PRK11863, N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 1e-42
Identities = 109/355 (30%), Positives = 158/355 (44%), Gaps = 75/355 (21%)
Query: 70 GASGYTGAEIVRLLANHPYFGIKLMT---ADRKAGQSIGSVFPHLISQDLPTMVAVKDAD 126
G +G TG +I LA I+L++ A RK D A +
Sbjct: 9 GEAGTTGLQIRERLAGRS--DIELLSIPEAKRK---------------D----AAARREL 47
Query: 127 FSNVDAVFCCLPHGTTQEIIKGLP-KSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQK 185
+ D CLP +E + + + +++D S R AP
Sbjct: 48 LNAADVAILCLPDDAAREAVALIDNPATRVIDASTAHR---------------TAPGW-- 90
Query: 186 EAVYGLTEIS---REDIKNARLVANPGCYPT-SIQLPLVPLIQANLIQ-YRNIIIDAKSG 240
VYG E++ RE I A+ VANPGCYPT +I L L PL+ A L+ + I+A SG
Sbjct: 91 --VYGFPELAPGQRERIAAAKRVANPGCYPTGAIAL-LRPLVDAGLLPADYPVSINAVSG 147
Query: 241 VSGAGRGAKEA--NLYSEIAEGIYSYGVT-RHRHVPEIEQGLTGFASSKVTVSFTPHLMP 297
SG G+ A A YG+ H+H+PE++ G A + FTP +
Sbjct: 148 YSGGGKAMIAAYEAAPDGKAPAFRLYGLGLAHKHLPEMQA-HAGLARRPI---FTPSVGN 203
Query: 298 MIRGMQSTIYVE---MAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHN-------- 346
+GM T+ + + G T EDL+ L Y E FV+ V P +
Sbjct: 204 FRQGMLVTVPLHLRLLPGGPTAEDLHAALADHYAGEAFVR-----VAPLDESAALDFLDP 258
Query: 347 --VRGSNYCLMNVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMLGFPENTGL 399
+ G+N + VF + G+A++++ +DNL KGASG A+QNLN+MLG E TGL
Sbjct: 259 EALNGTNRLELFVFGNEDHGQAVLVARLDNLGKGASGAAVQNLNLMLGLDEATGL 313
|
Length = 313 |
| >gnl|CDD|214863 smart00859, Semialdhyde_dh, Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Score = 124 bits (315), Expect = 7e-35
Identities = 46/143 (32%), Positives = 72/143 (50%), Gaps = 25/143 (17%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTA-DRKAGQSIGSVFPHLISQDLPTMVAVK 123
++ ++GA+GY G E++RLLA HP F + + A R AG+ + PHL ++ +
Sbjct: 1 KVAIVGATGYVGQELLRLLAEHPDFELTALAASSRSAGKKVSEAGPHL-KGEVVLELDPP 59
Query: 124 DADFSNVDAVFCCLPHGTTQEIIKGLPKSL----KIVDLSADFRLRDVSEYEEWYGQPHI 179
D + VD VF LPHG ++E LP++ ++DLS+ FR+ D
Sbjct: 60 DFEELAVDIVFLALPHGVSKESAPLLPRAAAAGAVVIDLSSAFRMDD------------- 106
Query: 180 APDLQKEAVYGLTEISREDIKNA 202
+ YGL E++ E IK A
Sbjct: 107 ------DVPYGLPEVNPEAIKKA 123
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. Length = 123 |
| >gnl|CDD|233598 TIGR01851, argC_other, N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 2e-33
Identities = 93/294 (31%), Positives = 139/294 (47%), Gaps = 46/294 (15%)
Query: 123 KDAD-----FSNVDAVFCCLPHGTTQEIIKGLPKS-LKIVDLSADFRLRDVSEYEEW-YG 175
KDA + D CLP +E + + I+D S +R D +W YG
Sbjct: 38 KDAAERAKLLNAADVAILCLPDDAAREAVSLVDNPNTCIIDASTAYRTAD-----DWAYG 92
Query: 176 QPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYR-NII 234
P +AP RE I+N++ +ANPGCYPT + PL++A ++ I
Sbjct: 93 FPELAPG------------QREKIRNSKRIANPGCYPTGFIALMRPLVEAGILPADFPIT 140
Query: 235 IDAKSGVSGAGRG------AKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVT 288
I+A SG SG G+ A+ S IY +T H+H+PE+ +G A +
Sbjct: 141 INAVSGYSGGGKAMIADYEQGSADNPSLQPFRIYGLALT-HKHLPEMRV-HSGLALPPI- 197
Query: 289 VSFTPHLMPMIRGMQSTIYV---EMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTH 345
FTP + +GM TI + +A V+ D++ L Y+ E+FV++ V
Sbjct: 198 --FTPAVGNFAQGMAVTIPLHLQTLASKVSPADIHAALADYYQGEQFVRVAPLDDVETLD 255
Query: 346 N-------VRGSNYCLMNVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMLG 392
N + G+N + VF RA++++ +DNL KGASG A+QNLNIMLG
Sbjct: 256 NTFLDPQGLNGTNRLDLFVFGSDDGERALLVARLDNLGKGASGAAVQNLNIMLG 309
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment [Amino acid biosynthesis, Glutamate family]. Length = 310 |
| >gnl|CDD|201603 pfam01118, Semialdhyde_dh, Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 2e-31
Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 21/140 (15%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTA-DRKAGQSIGSVFPHLISQDLPTMVAVK 123
++ ++GA+GY G E++RLLA HP + + A R AG+ + +P L + V
Sbjct: 1 KVAIVGATGYVGQELLRLLAEHPPLELVALVASSRSAGKKVAFAYPILEGGKDLLLEDVD 60
Query: 124 DADFSNVDAVFCCLPHGTTQEIIKGLPKS-LKIVDLSADFRLRDVSEYEEWYGQPHIAPD 182
D +VD VF LP G ++E+ L ++ ++DLS+ FR+ D
Sbjct: 61 PEDLKDVDIVFLALPAGVSKELAPKLLEAGAVVIDLSSAFRMDD---------------- 104
Query: 183 LQKEAVYGLTEISREDIKNA 202
+ Y L E++RE IK A
Sbjct: 105 ---DVPYVLPEVNREAIKKA 121
|
This Pfam entry contains the following members: N-acetyl-glutamine semialdehyde dehydrogenase (AgrC) Aspartate-semialdehyde dehydrogenase. Length = 121 |
| >gnl|CDD|217222 pfam02774, Semialdhyde_dhC, Semialdehyde dehydrogenase, dimerisation domain | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 4e-21
Identities = 47/175 (26%), Positives = 74/175 (42%), Gaps = 24/175 (13%)
Query: 219 LVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTR-HRHVPEIEQ 277
L PL A L +I+D VSGAG+ AK + IA+ + Y H PE +
Sbjct: 1 LKPLRDA-LGGLERVIVDTYQAVSGAGKKAKPGVFGAPIADNLIPYIDGEEHNGTPETRE 59
Query: 278 GLTGFASSKVTVSFTP------HLMPMIRGMQSTIYVEMAP-GVTIEDLYQQLKISYEHE 330
L +K + FTP +P+ RG T+ V++ + +E++Y+ Y
Sbjct: 60 ELKMVNETKKILGFTPKVSATCVRVPVFRGHSETVTVKLKLKPIDVEEVYEAF---YAAP 116
Query: 331 E-FVKLLEKGVVPRTHNVRG-SNYCLM------NVFPDRIPGRAIIISVIDNLVK 377
FV + + P VRG +N+ + + ++SVIDNL K
Sbjct: 117 GVFVVVRPEEDYPTPRAVRGGTNFVYVGRVRKDPDGDRGL----KLVSVIDNLRK 167
|
This Pfam entry contains the following members: N-acetyl-glutamine semialdehyde dehydrogenase (AgrC) Aspartate-semialdehyde dehydrogenase. Length = 167 |
| >gnl|CDD|233220 TIGR00978, asd_EA, aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Score = 91.7 bits (228), Expect = 1e-20
Identities = 90/371 (24%), Positives = 145/371 (39%), Gaps = 74/371 (19%)
Query: 64 VRIGLLGASGYTGAEIVRLLANHPYFGI-KLMTADRKAGQSIGSVFPHLISQDLP----- 117
+R+ +LGA+G G + V+LLA HPYF + K++ + R AG+ G + D+P
Sbjct: 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRD 60
Query: 118 -TMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSA-DFRLR-DVSEYEEWY 174
+V + +VD VF LP +E+ L ++ K V +A + R+ DV
Sbjct: 61 LPIVEPEPIAEDDVDIVFSALPSEVAEEVEPKLAEAGKPVFSNASNHRMDPDV------- 113
Query: 175 GQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNII 234
P I P++ + + L ++ +E +V NP C + L L PLI A I + +
Sbjct: 114 --PLIIPEVNSDHL-ELLKVQKERGWKGFIVTNPNCTTAGLTLALKPLIDAFGI--KKVH 168
Query: 235 IDAKSGVSGAGRG-----AKEANLYSEI--------AEGIYSYGVTRHRHVPEIEQGLTG 281
+ VSGAG N+ I E G ++E G
Sbjct: 169 VTTMQAVSGAGYPGVPSMDILDNIIPHIGGEEEKIERETRKILG--------KLENGKIE 220
Query: 282 FASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVV 341
A V+ T +P++ G +++VE IE+ I + F L +K +
Sbjct: 221 PAPFSVSA--TTTRVPVLDGHTESVHVEFDKKFDIEE------IREALKSFRGLPQKLGL 272
Query: 342 P------------------RTHNVRGSNYCLMNVFPDRIPGRAIIIS---VIDNLVKGAS 380
P R G M V R+ + + NLV+GA+
Sbjct: 273 PSAPEKPIIVRDEEDRPQPRLDRDAGGG---MAVTVGRLREEGGSLKYVVLGHNLVRGAA 329
Query: 381 GQALQNLNIML 391
G L N +
Sbjct: 330 GATLLNAELAY 340
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan [Amino acid biosynthesis, Aspartate family]. Length = 341 |
| >gnl|CDD|236329 PRK08664, PRK08664, aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 78.3 bits (194), Expect = 4e-16
Identities = 84/366 (22%), Positives = 149/366 (40%), Gaps = 65/366 (17%)
Query: 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA-DRKAGQSIGSVFPHLISQDLP----- 117
+++G+LGA+G G V+LLANHP+F + + A +R AG++ G + +P
Sbjct: 4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVAD 63
Query: 118 -TMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIV-DLSADFRLR-DVSEYEEWY 174
+V+ +VD VF LP E+ + K+ K V ++ R+ DV
Sbjct: 64 MEVVSTDPEAVDDVDIVFSALPSDVAGEVEEEFAKAGKPVFSNASAHRMDPDV------- 116
Query: 175 GQPHIAPDLQKEAVYGLTEISRE-DIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNI 233
P + P++ E + L E+ R+ + +V NP C + L L PL+ + +
Sbjct: 117 --PLVIPEVNPEHL-ELIEVQRKRRGWDGFIVTNPNCSTIGLVLALKPLMDFGI---ERV 170
Query: 234 IIDAKSGVSGAGRGAKEANLYS-----EIAEGIYSYGVTRHRHVP--------EIEQGLT 280
+ +SGAG Y +I + + Y + + E G
Sbjct: 171 HVTTMQAISGAG--------YPGVPSMDIVDNVIPYIGGEEEKIEKETLKILGKFEGGKI 222
Query: 281 GFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIED----------LYQQLKISYEHE 330
A ++ T H +P+I G ++V+ V E+ L Q+L + +
Sbjct: 223 VPADFPISA--TCHRVPVIDGHTEAVFVKFKEDVDPEEIREALESFKGLPQELGLPSAPK 280
Query: 331 EFVKLLEKGVVP--RTHNVRGSNYCLMNVFPDRI---PGRAI-IISVIDNLVKGASGQAL 384
+ + L E+ P R G M V R+ I + + N V+GA+G ++
Sbjct: 281 KPIILFEEPDRPQPRLDRDAGDG---MAVSVGRLREDGIFDIKFVVLGHNTVRGAAGASV 337
Query: 385 QNLNIM 390
N ++
Sbjct: 338 LNAELL 343
|
Length = 349 |
| >gnl|CDD|223214 COG0136, Asd, Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 6e-16
Identities = 82/379 (21%), Positives = 132/379 (34%), Gaps = 99/379 (26%)
Query: 65 RIGLLGASGYTGAEIVRLLAN-HPYFGIKLMTA-DRKAGQSIGSVFPHLISQDLPTMVAV 122
+ +LGA+G G ++ LL H F ++ A R AG+ S +P A
Sbjct: 3 NVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEF--GGKSIGVPEDAA- 59
Query: 123 KDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIV-DLSADFRL-RDVSEYEEWYGQPHIA 180
+ FS+VD VF ++E+ ++ +V D S+ FR+ DV P +
Sbjct: 60 DEFVFSDVDIVFFAAGGSVSKEVEPKAAEAGCVVIDNSSAFRMDPDV---------PLVV 110
Query: 181 PDLQKEAVYGLTEISREDIKNAR----LVANPGCYPTSIQL--PLVPLIQANLIQYRNII 234
P E++ E + + + ++ANP C ++IQL L PL A I + ++
Sbjct: 111 P-----------EVNPEHLIDYQKRGFIIANPNC--STIQLVLALKPLHDAFGI--KRVV 155
Query: 235 IDAKSGVSGAGRGA--------KEANLYSEIAEGIYS---------YGVTRHRHVPEIEQ 277
+ VSGAG I Y G + + E +
Sbjct: 156 VSTYQAVSGAGAEGGVELAGQTDALLNGIPILPIGYPLAFNVIPHIDGFLDNGYTKEEWK 215
Query: 278 GLTG----FASSKVTVSFTPHLMPMIRGMQSTIYVEM----------------APGVTIE 317
+ VS T +P+ G + VE APGV +
Sbjct: 216 IEAETRKILGDPDIKVSATCVRVPVFYGHSEAVTVEFKKDVDPEEIREELLPSAPGVVVV 275
Query: 318 DLYQQ-----LKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIPGRAIIISVI 372
D + L + E V + K + G + V V
Sbjct: 276 DNPEDRPQTPLDATGGDEVSVGRIRKDLS-------GPEGLKLWV-------------VG 315
Query: 373 DNLVKGASGQALQNLNIML 391
DNL KGA+ A+ ++L
Sbjct: 316 DNLRKGAALNAVLIAELLL 334
|
Length = 334 |
| >gnl|CDD|233347 TIGR01296, asd_B, aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 4e-07
Identities = 63/300 (21%), Positives = 118/300 (39%), Gaps = 72/300 (24%)
Query: 65 RIGLLGASGYTGAEIVRLLA--NHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAV 122
+ ++GA+G G E+++LL N P + L+ + R AG+ + ++L +
Sbjct: 1 NVAIVGATGAVGQEMLKLLEERNFPIDKLVLLASARSAGRKL-----TFKGKEL-EVEEA 54
Query: 123 KDADFSNVDAVFCCLPHGTTQEIIKGLPKSLK----IVDLSADFRL-RDVSEYEEWYGQP 177
+ F +D ++E PK+ K ++D ++ FR+ DV P
Sbjct: 55 ETESFEGIDIALFSAGGSVSKEFA---PKAAKAGVIVIDNTSAFRMDPDV---------P 102
Query: 178 HIAPDLQKEAVYGLTEISREDIKNAR---LVANPGCYPTSIQLPLVPLIQANLIQYRNII 234
+ P E++ ED+K ++ANP C ++IQ+ +V + + + ++
Sbjct: 103 LVVP-----------EVNFEDLKEFNPKGIIANPNC--STIQMVVVLKPLHDEAKIKRVV 149
Query: 235 IDAKSGVSGAGRGA--------------KEANLYSEIAEGIYSYGVTRHRHVPEI----E 276
+ VSGAG E Y + + Y + +P I +
Sbjct: 150 VSTYQAVSGAGNAGVEELYNQTKAVLEGAEQLPYIQPKANKFPYQIA-FNAIPHIDSFVD 208
Query: 277 QGLTG------FASSKVT------VSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLK 324
G T F + K+ VS T +P+ G +I +E ++ ED + LK
Sbjct: 209 DGYTKEEQKMLFETRKIMGIPDLKVSATCVRVPVFTGHSESINIEFEKEISPEDARELLK 268
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978 [Amino acid biosynthesis, Aspartate family]. Length = 338 |
| >gnl|CDD|178009 PLN02383, PLN02383, aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 5e-06
Identities = 45/201 (22%), Positives = 79/201 (39%), Gaps = 35/201 (17%)
Query: 59 KSEKQVRIGLLGASGYTGAEIVRLLA--NHPYFGIKLMTADRKAGQSIGSVFPHLISQDL 116
+E + ++G +G G E + +L + PY +K++ + R AG+ + ++L
Sbjct: 3 LTENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEEL 62
Query: 117 PTMVAVKDADFSNVDAVF------CCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEY 170
+ F VD G + K +VD S+ FR+ +
Sbjct: 63 ------TEDSFDGVDIALFSAGGSISKKFGPIA-----VDKGAVVVDNSSAFRMEE---- 107
Query: 171 EEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLV-PLIQANLIQ 229
G P + P++ EA+ + L+ANP C T I L V PL + +
Sbjct: 108 ----GVPLVIPEVNPEAMKH----IKLGKGKGALIANPNC-STIICLMAVTPLHR--HAK 156
Query: 230 YRNIIIDAKSGVSGAGRGAKE 250
+ +++ SGAG A E
Sbjct: 157 VKRMVVSTYQAASGAGAAAME 177
|
Length = 344 |
| >gnl|CDD|187569 cd05259, PCBER_SDR_a, phenylcoumaran benzylic ether reductase (PCBER) like, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPH---LISQDLPTMVA 121
+I + GA+G G IV L P F + ++T R + S P ++ D + +
Sbjct: 1 KIAIAGATGTLGGPIVSALLASPGFTVTVLT--RPSSTSSNEFQPSGVKVVPVDYASHES 58
Query: 122 VKDADFSNVDAVFCCLPHGTTQEIIK 147
+ A VDAV L + +K
Sbjct: 59 LVAA-LKGVDAVISALGGAAIGDQLK 83
|
PCBER and pinoresinol-lariciresinol reductases are NADPH-dependent aromatic alcohol reductases, and are atypical members of the SDR family. Other proteins in this subgroup are identified as eugenol synthase. These proteins contain an N-terminus characteristic of NAD(P)-binding proteins and a small C-terminal domain presumed to be involved in substrate binding, but they do not have the conserved active site Tyr residue typically found in SDRs. Numerous other members have unknown functions. The glycine rich NADP-binding motif in this subgroup is of 2 forms: GXGXXG and G[GA]XGXXG; it tends to be atypical compared with the forms generally seen in classical or extended SDRs. The usual SDR active site tetrad is not present, but a critical active site Lys at the usual SDR position has been identified in various members, though other charged and polar residues are found at this position in this subgroup. Atypical SDR-related proteins retain the Rossmann fold of the SDRs, but have limited sequence identity and generally lack the catalytic properties of the archetypical members. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 282 |
| >gnl|CDD|136022 PRK06728, PRK06728, aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 3e-04
Identities = 42/189 (22%), Positives = 76/189 (40%), Gaps = 28/189 (14%)
Query: 60 SEKQVRIGLLGASGYTGAEIVRLLANHPYFGIK---LMTADRKAGQSIGSVFPHLISQDL 116
SEK + ++GA+G G +I+ LL F I L+++ R AG+++ +I Q+
Sbjct: 2 SEKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQE- 60
Query: 117 PTMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQ 176
K F VD F +++ + S IV + + SEY +
Sbjct: 61 -----AKINSFEGVDIAFFSAGGEVSRQFVNQAVSSGAIV-------IDNTSEYRMAHDV 108
Query: 177 PHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIID 236
P + P++ + ++ ++A P C + L P+ + II+
Sbjct: 109 PLVVPEVNAHTLK----------EHKGIIAVPNCSALQMVTALQPIRKV--FGLERIIVS 156
Query: 237 AKSGVSGAG 245
VSG+G
Sbjct: 157 TYQAVSGSG 165
|
Length = 347 |
| >gnl|CDD|187560 cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 5e-04
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 68 LLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQ-SIGSVFPHLISQDLPTMVAVKDAD 126
+LGA+G G ++R L PY+ K+ R+ I D + +A
Sbjct: 5 VLGATGLVGKHLLRELLKSPYYS-KVTAIVRRKLTFPEAKEKLVQIVVDFERLDEYLEA- 62
Query: 127 FSNVDAVFCCLPHGTT 142
F N D FCCL GTT
Sbjct: 63 FQNPDVGFCCL--GTT 76
|
Atypical SDRs in this subgroup include CC3 (also known as TIP30) which is implicated in tumor suppression. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine rich NAD(P)-binding motif that resembles the extended SDRs, and have an active site triad of the SDRs (YXXXK and upstream Ser), although the upstream Asn of the usual SDR active site is substituted with Asp. For CC3, the Tyr of the triad is displaced compared to the usual SDRs and the protein is monomeric, both these observations suggest that the usual SDR catalytic activity is not present. NADP appears to serve an important role as a ligand, and may be important in the interaction with other macromolecules. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 214 |
| >gnl|CDD|237845 PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 6e-04
Identities = 48/202 (23%), Positives = 88/202 (43%), Gaps = 51/202 (25%)
Query: 64 VRIGLLGASGYTGAEIVRLLA--NHPYFGIKLMTADRKAGQSI---GSVFPHLISQDLPT 118
+ ++GA+G G E++ +L N P ++L+ + R AG+ + G ++L
Sbjct: 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKG--------KEL-K 52
Query: 119 MVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLK----IVDLSADFRL-RDVSEYEEW 173
+ + DFS VD +++ PK+ ++D S+ FR+ DV
Sbjct: 53 VEDLTTFDFSGVDIALFSAGGSVSKKYA---PKAAAAGAVVIDNSSAFRMDPDV------ 103
Query: 174 YGQPHIAPDLQKEAVYGLTEISREDIKNAR---LVANPGCYPTSIQLPLV--PLIQANLI 228
P + P E++ E + R ++ANP C ++IQ+ + PL A I
Sbjct: 104 ---PLVVP-----------EVNPEALAEHRKKGIIANPNC--STIQMVVALKPLHDAAGI 147
Query: 229 QYRNIIIDAKSGVSGAGRGAKE 250
+ +++ VSGAG+ E
Sbjct: 148 K--RVVVSTYQAVSGAGKAGME 167
|
Length = 334 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 406 | |||
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 100.0 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 100.0 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 100.0 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 100.0 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 100.0 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 100.0 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 100.0 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 100.0 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 100.0 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 100.0 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 100.0 | |
| KOG4354 | 340 | consensus N-acetyl-gamma-glutamyl-phosphate reduct | 100.0 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 100.0 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 100.0 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 100.0 | |
| PRK06901 | 322 | aspartate-semialdehyde dehydrogenase; Provisional | 100.0 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 100.0 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 100.0 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 100.0 | |
| KOG4777 | 361 | consensus Aspartate-semialdehyde dehydrogenase [Am | 100.0 | |
| PRK15425 | 331 | gapA glyceraldehyde-3-phosphate dehydrogenase A; P | 100.0 | |
| PRK13535 | 336 | erythrose 4-phosphate dehydrogenase; Provisional | 100.0 | |
| PRK08955 | 334 | glyceraldehyde-3-phosphate dehydrogenase; Validate | 100.0 | |
| PRK07403 | 337 | glyceraldehyde-3-phosphate dehydrogenase; Reviewed | 100.0 | |
| TIGR01532 | 325 | E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas | 100.0 | |
| PLN03096 | 395 | glyceraldehyde-3-phosphate dehydrogenase A; Provis | 100.0 | |
| PTZ00023 | 337 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 100.0 | |
| PRK07729 | 343 | glyceraldehyde-3-phosphate dehydrogenase; Validate | 100.0 | |
| PLN02358 | 338 | glyceraldehyde-3-phosphate dehydrogenase | 100.0 | |
| PLN02237 | 442 | glyceraldehyde-3-phosphate dehydrogenase B | 99.98 | |
| TIGR01534 | 327 | GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, | 99.98 | |
| PLN02272 | 421 | glyceraldehyde-3-phosphate dehydrogenase | 99.97 | |
| PF02774 | 184 | Semialdhyde_dhC: Semialdehyde dehydrogenase, dimer | 99.97 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 99.97 | |
| PTZ00353 | 342 | glycosomal glyceraldehyde-3-phosphate dehydrogenas | 99.97 | |
| PRK08289 | 477 | glyceraldehyde-3-phosphate dehydrogenase; Reviewed | 99.95 | |
| COG0057 | 335 | GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt | 99.94 | |
| PTZ00434 | 361 | cytosolic glyceraldehyde 3-phosphate dehydrogenase | 99.94 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 99.92 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 99.83 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 99.77 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 99.51 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 99.5 | |
| PF00044 | 151 | Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, | 99.23 | |
| smart00846 | 149 | Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, | 98.96 | |
| PF02800 | 157 | Gp_dh_C: Glyceraldehyde 3-phosphate dehydrogenase, | 98.79 | |
| KOG0657 | 285 | consensus Glyceraldehyde 3-phosphate dehydrogenase | 98.53 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 98.21 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 97.96 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 97.92 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 97.83 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 97.68 | |
| COG4569 | 310 | MhpF Acetaldehyde dehydrogenase (acetylating) [Sec | 97.58 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 97.56 | |
| KOG4039 | 238 | consensus Serine/threonine kinase TIP30/CC3 [Signa | 97.48 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 97.27 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 97.12 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 97.07 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 97.02 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 97.02 | |
| PLN02775 | 286 | Probable dihydrodipicolinate reductase | 96.8 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 96.77 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 96.75 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 96.67 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 96.65 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 96.64 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 96.61 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 96.58 | |
| TIGR02130 | 275 | dapB_plant dihydrodipicolinate reductase. This nar | 96.42 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 96.41 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 96.35 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 96.34 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 96.31 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 96.3 | |
| PLN02256 | 304 | arogenate dehydrogenase | 96.28 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 96.24 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 96.23 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 96.18 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 96.18 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 96.16 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 96.11 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 96.0 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 96.0 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 95.99 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 95.97 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 95.97 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 95.97 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 95.95 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 95.94 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 95.9 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 95.85 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 95.83 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 95.81 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 95.77 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 95.76 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 95.73 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 95.71 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 95.69 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 95.67 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 95.65 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 95.61 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 95.57 | |
| PRK05447 | 385 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; P | 95.56 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 95.55 | |
| COG3804 | 350 | Uncharacterized conserved protein related to dihyd | 95.53 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 95.53 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 95.36 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 95.33 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 95.28 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 95.21 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 95.2 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 95.16 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 95.05 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 95.05 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 95.01 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 95.01 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 94.99 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 94.96 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 94.95 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 94.91 | |
| PRK06813 | 346 | homoserine dehydrogenase; Validated | 94.91 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 94.9 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 94.85 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 94.84 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 94.74 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 94.74 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 94.73 | |
| PF02670 | 129 | DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re | 94.63 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 94.6 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 94.56 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 94.54 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 94.53 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 94.49 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 94.47 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 94.47 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 94.42 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 94.4 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 94.29 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 94.27 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 94.21 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 94.18 | |
| PLN02712 | 667 | arogenate dehydrogenase | 94.17 | |
| PLN02712 | 667 | arogenate dehydrogenase | 94.16 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 94.15 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 94.13 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 94.12 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 94.12 | |
| KOG1203 | 411 | consensus Predicted dehydrogenase [Carbohydrate tr | 94.11 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 94.11 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 94.08 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 94.08 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 94.07 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 94.06 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 94.01 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 93.9 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 93.9 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 93.78 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 93.75 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 93.7 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 93.67 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 93.62 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 93.6 | |
| COG0460 | 333 | ThrA Homoserine dehydrogenase [Amino acid transpor | 93.58 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 93.56 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 93.55 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 93.53 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 93.53 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 93.52 | |
| PLN00106 | 323 | malate dehydrogenase | 93.5 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 93.47 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 93.45 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 93.42 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 93.41 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 93.35 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 93.31 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 93.3 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 93.27 | |
| PLN02696 | 454 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | 93.21 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 93.15 | |
| COG5322 | 351 | Predicted dehydrogenase [General function predicti | 93.13 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 93.09 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 93.06 | |
| TIGR00243 | 389 | Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras | 93.04 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 93.02 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 93.01 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 93.0 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 92.92 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 92.83 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 92.78 | |
| PLN02928 | 347 | oxidoreductase family protein | 92.65 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 92.62 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 92.52 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 92.5 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 92.31 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 92.28 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 92.23 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 92.19 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 92.19 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 92.18 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 92.16 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 92.06 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 92.0 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 91.97 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 91.95 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 91.9 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 91.9 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 91.9 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 91.89 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 91.88 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 91.88 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 91.72 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 91.69 | |
| PLN02602 | 350 | lactate dehydrogenase | 91.68 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 91.62 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 91.56 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 91.54 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 91.49 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 91.47 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 91.33 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 91.21 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 91.12 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 91.09 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 91.07 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 90.98 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.97 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 90.93 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 90.89 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 90.83 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 90.78 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.64 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 90.63 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 90.57 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 90.45 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 90.33 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 90.32 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 90.23 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 90.23 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 90.2 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 90.17 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 90.05 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 90.0 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 89.99 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 89.75 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 89.74 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 89.68 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 89.68 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 89.66 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 89.56 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 89.48 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 89.46 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 89.4 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 89.39 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 89.29 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 89.28 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 89.27 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 89.27 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 89.25 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 89.22 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 89.2 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 89.16 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 89.11 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 89.1 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 89.1 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 89.08 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 88.99 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 88.89 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 88.87 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 88.76 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 88.65 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 88.63 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 88.57 | |
| PLN02700 | 377 | homoserine dehydrogenase family protein | 88.54 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 88.45 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 88.39 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 88.38 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 88.36 | |
| PRK09436 | 819 | thrA bifunctional aspartokinase I/homoserine dehyd | 88.2 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 88.13 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 88.09 | |
| KOG2741 | 351 | consensus Dimeric dihydrodiol dehydrogenase [Carbo | 88.02 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 88.01 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 87.93 | |
| COG0743 | 385 | Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras | 87.93 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 87.91 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 87.88 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 87.76 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 87.65 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 87.55 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 87.52 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 87.49 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 87.41 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 87.4 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 87.31 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 87.27 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 87.23 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 87.22 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 87.19 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 87.08 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 86.64 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 86.59 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 86.46 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 86.37 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 86.29 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 86.13 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 85.98 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 85.69 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 85.55 | |
| PRK09466 | 810 | metL bifunctional aspartate kinase II/homoserine d | 85.54 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 85.47 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 85.46 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 85.29 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 84.96 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 84.74 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 84.72 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 84.64 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 84.62 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 84.58 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 84.57 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 84.48 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 84.4 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 84.37 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 84.29 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 84.06 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 83.97 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 83.94 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 83.94 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 83.93 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 83.84 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 83.53 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 83.51 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 83.42 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 83.33 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 83.31 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 83.22 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 83.21 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 83.02 | |
| KOG1430 | 361 | consensus C-3 sterol dehydrogenase/3-beta-hydroxys | 82.97 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 82.93 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 82.74 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 82.46 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 82.45 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 82.39 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 82.32 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 82.19 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 82.14 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 82.09 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 82.04 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 81.88 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 81.83 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 81.72 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 81.66 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 81.45 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 81.31 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 81.26 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 81.24 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 81.24 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 81.2 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 81.06 | |
| KOG1494 | 345 | consensus NAD-dependent malate dehydrogenase [Ener | 80.77 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 80.77 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 80.73 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 80.71 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 80.58 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 80.51 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 80.35 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 80.27 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 80.03 |
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-96 Score=714.97 Aligned_cols=344 Identities=47% Similarity=0.845 Sum_probs=322.8
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCcccc-CCCcccccCccc--CCCCCEEEEcCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQ-DLPTMVAVKDAD--FSNVDAVFCCLP 138 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~-~~~~~~~~~~~~--~~~vDvVF~al~ 138 (406)
||+||+|+|||||+|.||+|+|.+||++|+..+++++++|+++..+||++.+. ++. ++..+++. ..++|+||+|+|
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~-~~~~~~~~~~~~~~DvvFlalP 79 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLP-FQTIDPEKIELDECDVVFLALP 79 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccc-cccCChhhhhcccCCEEEEecC
Confidence 57999999999999999999999999999888888888999999999999852 232 33333332 346899999999
Q ss_pred CcchHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCcEEecCCChHHHHHH
Q 015441 139 HGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQL 217 (406)
Q Consensus 139 ~~~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~iVanPgC~tta~~l 217 (406)
|++|+++++.+ ++|++|||+|+|||++|.+.|++||+.+|..||++.+++||||||+|++|+++++|||||||+||.+|
T Consensus 80 hg~s~~~v~~l~~~g~~VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpEl~~e~i~~A~lIAnPGCypTa~iL 159 (349)
T COG0002 80 HGVSAELVPELLEAGCKVIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPELHREKIRGAKLIANPGCYPTAAIL 159 (349)
T ss_pred chhHHHHHHHHHhCCCeEEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCcccCHHHHhcCCEeeCCCchHHHHHH
Confidence 99999999986 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCcce-EEEEEeeccCccCcchhhcccHHHHhcCcccccCCcccchhhhhhhhccccCCCceEEEEEEEe
Q 015441 218 PLVPLIQANLIQYRN-IIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLM 296 (406)
Q Consensus 218 ~L~PL~~~~l~~i~~-i~v~t~~gvSGaG~~~~~~~~~~e~~~ni~py~~~~h~h~pEi~~~l~~i~~~~~~v~~t~~rV 296 (406)
+|+||.++++++.+. ++|++++|+|||||++...+|+.++.+|++||++..|||+|||+|+|+++.+....++||||.+
T Consensus 160 al~PL~~~~ll~~~~~~ivdakSG~SGaGrk~s~~~~~~e~~~~~~~Y~~~~HrH~pEi~q~l~~l~~~~~~v~FtPhl~ 239 (349)
T COG0002 160 ALAPLVKAGLLDPDSPPIVDAKSGVSGAGRKASVKNHFPEVNDSLRPYGLTGHRHTPEIEQHLGRLAGRKVPVIFTPHLG 239 (349)
T ss_pred HHHHHHHcCCcCCCCceEEEEeEecCcCCCCccccccchhhccccccccccccCchHHHHHHhhhcccCcCceEEecccc
Confidence 999999999988887 5999999999999999999999999999999999999999999999998877667799999999
Q ss_pred eecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCccccccccCCCcEEEEEEEeCcCCeEEEEEEehhhh
Q 015441 297 PMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIPGRAIIISVIDNLV 376 (406)
Q Consensus 297 Pv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~~~v~g~n~~~v~~~~~~~~~~~~~~~v~DNL~ 376 (406)
|++||+++|+|+.+++.++.+|++++|+++|+++|||+|.+.+.+|++++|.|+|+|+||+..+++.++++++++||||+
T Consensus 240 p~~RGIl~Ti~~~l~~~~t~~~i~~~y~~~Y~~epfVrv~~~~~~P~~k~V~GsN~cdIgf~~d~~~~rvvvvsaIDNL~ 319 (349)
T COG0002 240 PFVRGILATIYLKLKDLVTLEELHAAYEEFYAGEPFVRVVPEGGYPDTKAVAGSNFCDIGFAVDERTGRVVVVSAIDNLV 319 (349)
T ss_pred cccceEEEEEEEecCCCCCHHHHHHHHHHHhCCCCeEEEecCCCCCChhhhcCCcceEEEEEEcCCCCEEEEEEEecccc
Confidence 99999999999999999999999999999999999999999878999999999999999988888889999999999999
Q ss_pred HhHHHHHHHHHHHHhCCCcccCCCCCCCCC
Q 015441 377 KGASGQALQNLNIMLGFPENTGLLYQPLFP 406 (406)
Q Consensus 377 KGAAgqAVQ~~nl~~g~~e~~gl~~~~~~p 406 (406)
||||||||||||+||||+||+||.+.|++|
T Consensus 320 KGAAGQAVQnmNim~G~dE~~GL~~~p~~P 349 (349)
T COG0002 320 KGAAGQAVQNMNIMFGFDETLGLPFVPLYP 349 (349)
T ss_pred ccHHHHHHHHHHHHcCCchhhCCCcCCCCC
Confidence 999999999999999999999999999998
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-93 Score=719.95 Aligned_cols=347 Identities=81% Similarity=1.241 Sum_probs=327.1
Q ss_pred cCCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 60 SEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 60 ~~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
+.+++||+|+|||||+|++|+|+|++||+++++.+++++++|+.+.+.+|++.+.++..+++++.+++.++|+||+|+|+
T Consensus 35 ~~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~ 114 (381)
T PLN02968 35 SEEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPH 114 (381)
T ss_pred cccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCH
Confidence 35778999999999999999999999999999999999999999999999887656554555555557889999999999
Q ss_pred cchHHHHhhCCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCcEEecCCChHHHHHHHH
Q 015441 140 GTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPL 219 (406)
Q Consensus 140 ~~s~~~~~~l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~iVanPgC~tta~~l~L 219 (406)
+.++++++.+++|++|||+|++||+++++.|++||++||+.||+|++++||+||+||++++++++|||||||||+++|+|
T Consensus 115 ~~s~~i~~~~~~g~~VIDlSs~fRl~~~~~y~~~y~~p~~~pe~~~~~~yglpE~~r~~i~~~~iIAnPgC~~t~~~laL 194 (381)
T PLN02968 115 GTTQEIIKALPKDLKIVDLSADFRLRDIAEYEEWYGHPHRAPELQKEAVYGLTELQREEIKSARLVANPGCYPTGIQLPL 194 (381)
T ss_pred HHHHHHHHHHhCCCEEEEcCchhccCCcccchhccCCCCCCcccchhhhcccchhCHHHhcCCCEEECCCCHHHHHHHHH
Confidence 99999999887899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhcCcccccCCcccchhhhhhhhccccCCCceEEEEEEEeeec
Q 015441 220 VPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMI 299 (406)
Q Consensus 220 ~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni~py~~~~h~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~ 299 (406)
+||+++++++.++|+|+++||+||||+++++++|+.|+.+|++||+.+.|||+|||++.+.++++..+.|+||||||||+
T Consensus 195 ~PL~~~~~i~~~~iiv~a~sgvSGAG~~~~~~~l~~e~~~n~~~y~~~~h~h~pEie~~~~~~~~~~~~v~ft~~~vPv~ 274 (381)
T PLN02968 195 VPLVKAGLIEPDNIIIDAKSGVSGAGRGAKEANLYTEIAEGIGAYGVTRHRHVPEIEQGLADAAGSKVTPSFTPHLMPMS 274 (381)
T ss_pred HHHHHcCCCCCceEEEEEeeeccccCcccchhhhHHHhcccceeeccCCCCCcchHHHHHHHHhCCCCCEEEEeEEeecc
Confidence 99999987765789999999999999999999899999999999999999999999999988777778899999999999
Q ss_pred ceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCccccccccCCCcEEEEEEEeCcCCeEEEEEEehhhhHhH
Q 015441 300 RGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIPGRAIIISVIDNLVKGA 379 (406)
Q Consensus 300 rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~~~v~g~n~~~v~~~~~~~~~~~~~~~v~DNL~KGA 379 (406)
|||++|+|++++++++.+|++++|+++|++++||++.+++.+|+|++++|+|+|+||+.++++++++++|+++|||+|||
T Consensus 275 rG~~~tv~v~~~~~~~~~~v~~~~~~~y~~~~fV~~~~~~~~P~~~~v~gtn~~~ig~~~~~~~~~l~~~~~~DNL~KGA 354 (381)
T PLN02968 275 RGMQSTVYVHYAPGVTAEDLHQHLKERYEGEEFVKVLERGAVPHTDHVRGSNYCELNVFADRIPGRAIIISVIDNLVKGA 354 (381)
T ss_pred ccEEEEEEEEeCCCCCHHHHHHHHHHhCCCCCEEEeCCCCCCCChHHHCCCCcEEEEEEEeCCCCEEEEEEEeccHHHHH
Confidence 99999999999999999999999999999999999988777999999999999999999988888999999999999999
Q ss_pred HHHHHHHHHHHhCCCcccCCCCCCCCC
Q 015441 380 SGQALQNLNIMLGFPENTGLLYQPLFP 406 (406)
Q Consensus 380 AgqAVQ~~nl~~g~~e~~gl~~~~~~p 406 (406)
|||||||||+|+|||||+||.++|+||
T Consensus 355 AgqAVQ~~nl~~g~~E~~GL~~~~~~p 381 (381)
T PLN02968 355 SGQAVQNLNLMMGLPETTGLLQQPLFP 381 (381)
T ss_pred HHHHHHHHHHHhCCCcccCCccCCCCC
Confidence 999999999999999999999999998
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-89 Score=685.09 Aligned_cols=343 Identities=49% Similarity=0.859 Sum_probs=315.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEE-eccCcCCccccccccCccccCCCcccccCcccC-CCCCEEEEcCCCcc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLM-TADRKAGQSIGSVFPHLISQDLPTMVAVKDADF-SNVDAVFCCLPHGT 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l-~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~-~~vDvVF~al~~~~ 141 (406)
+||+|+|||||+|++++|+|.+||.++++.+ .+++++|+++...++++.+.....+...+.+++ .++|+||+|+|++.
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~ 80 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV 80 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH
Confidence 4899999999999999999999999999976 667789999988888775421112333333344 48999999999999
Q ss_pred hHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCcEEecCCChHHHHHHHHH
Q 015441 142 TQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLV 220 (406)
Q Consensus 142 s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~iVanPgC~tta~~l~L~ 220 (406)
++++++++ ++|++|||+|++|||++.+.|++||+.+|..||++.+++||+||+|+++++++++|||||||||+++++|+
T Consensus 81 s~~~~~~~~~~G~~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~n~~~i~~~~iianPgC~~t~~~l~L~ 160 (346)
T TIGR01850 81 SAELAPELLAAGVKVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPELHREEIKGARLIANPGCYPTATLLALA 160 (346)
T ss_pred HHHHHHHHHhCCCEEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCccCHHHhCCCcEEEcCCcHHHHHHHHHH
Confidence 99999876 78999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhcCcccccCCcccchhhhhhhhccccCCCceEEEEEEEeeecc
Q 015441 221 PLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMIR 300 (406)
Q Consensus 221 PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni~py~~~~h~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~r 300 (406)
||++.++++.++|+|+|+||+|||||++++++++.++.+|+.||+.+.|||.|||++.++++++++++|+||||||||+|
T Consensus 161 PL~~~~~i~~~~i~v~~~sgvSGaG~~~~~~~~~~~~~~~~~~y~~~~h~h~~Ei~~~l~~~~~~~~~v~ft~~~vPv~r 240 (346)
T TIGR01850 161 PLLKEGLIDPTSIIVDAKSGVSGAGRKASPANHFPEVNENLRPYKVTGHRHTPEIEQELGRLAGGKVKVSFTPHLVPMTR 240 (346)
T ss_pred HHHHcCCCCCCcEEEEEEEECcccCcCccccccchhhcCCeeeeccCCcCcHHHHHHHHHHhcCCCCCEEEEeEEeeccc
Confidence 99999877666899999999999999999999888999999999999999999999999998877788999999999999
Q ss_pred eeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCccccccccCCCcEEEEEEEeCcCCeEEEEEEehhhhHhHH
Q 015441 301 GMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIPGRAIIISVIDNLVKGAS 380 (406)
Q Consensus 301 G~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~~~v~g~n~~~v~~~~~~~~~~~~~~~v~DNL~KGAA 380 (406)
||++|+|++++++++.+|++++|+++|+++|||++.+++.+|+|++++|+|+|+||+..+...+++++|+++|||+||||
T Consensus 241 G~~~tv~v~~~~~~~~~~~~~~~~~~y~~~~~V~v~~~~~~p~~~~v~g~n~~~ig~~~d~~~~~l~~~~~~DNL~KGAA 320 (346)
T TIGR01850 241 GILATIYAKLKDGLTEEDLRAAYEEFYADEPFVRVLPEGEYPSTKAVIGSNFCDIGFAVDERTGRVVVVSAIDNLVKGAA 320 (346)
T ss_pred cEEEEEEEecCCCCCHHHHHHHHHHHhCCCCcEEEeCCCCCcChHHhcCCCeEEEEEEEcCCCCEEEEEEEeechhhhHH
Confidence 99999999999999999999999999999999999988779999999999999999655656789999999999999999
Q ss_pred HHHHHHHHHHhCCCcccCCCCCCCCC
Q 015441 381 GQALQNLNIMLGFPENTGLLYQPLFP 406 (406)
Q Consensus 381 gqAVQ~~nl~~g~~e~~gl~~~~~~p 406 (406)
||||||||+|+|||||+||.++|+||
T Consensus 321 g~AVq~~n~~~g~~e~~gl~~~~~~p 346 (346)
T TIGR01850 321 GQAVQNMNLMFGFDETTGLPFPPLYP 346 (346)
T ss_pred HHHHHHHHHHcCCCcccCCCcCCCCC
Confidence 99999999999999999999999998
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-84 Score=649.73 Aligned_cols=342 Identities=50% Similarity=0.844 Sum_probs=311.0
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
||+||+|+||||++|++++++|.+||.++++++.++++.|+.+...++++.......+++.++..+.++|+||+|+|++.
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~ 80 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGV 80 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHH
Confidence 57899999999999999999999999999999999888888888777766532111233343334568999999999999
Q ss_pred hHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCcEEecCCChHHHHHHHHH
Q 015441 142 TQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLV 220 (406)
Q Consensus 142 s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~iVanPgC~tta~~l~L~ 220 (406)
+.++++++ ++|++|||+|++|||++.+.|++||+.+|..||++.++.||+||+|+++++++++|||||||||+++++|+
T Consensus 81 ~~~~v~~a~~aG~~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lpe~~~~~i~~~~iIanPgC~~t~~~l~L~ 160 (343)
T PRK00436 81 SMDLAPQLLEAGVKVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLPELNREEIKGARLIANPGCYPTASLLALA 160 (343)
T ss_pred HHHHHHHHHhCCCEEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecCccCHHHhcCCCEEECCCCHHHHHHHHHH
Confidence 99999876 78999999999999998889999999999999999999999999999999989999999999999999999
Q ss_pred HHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhcCcccccCCcccchhhhhhhhccccCCCceEEEEEEEeeecc
Q 015441 221 PLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMIR 300 (406)
Q Consensus 221 PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni~py~~~~h~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~r 300 (406)
||++.+++..++++|+|+||+||||+++++++++.++.+|+.||+.+.|+|+|||.+.++++++ +|+||||||||+|
T Consensus 161 PL~~~~~i~~~~i~v~~~~g~SGaG~~~~~~~~~~~~~~~~~~y~~~~h~h~~Ei~~~l~~~~~---~v~~t~~~vPv~~ 237 (343)
T PRK00436 161 PLLKAGLIDPDSIIIDAKSGVSGAGRKASEGTLFSEVNENLRPYKVGGHRHTPEIEQELSALAG---EVSFTPHLVPMTR 237 (343)
T ss_pred HHHHcCCCCCCCEEEEEEEecccCCCCccccccchhhcCCeeecccCCCCCHHHHHHHHHHhcC---CEEEEeEEecccC
Confidence 9999875543489999999999999999999888888899999999999999999999988765 6999999999999
Q ss_pred eeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCccccccccCCCcEEEEEEEeCcCCeEEEEEEehhhhHhHH
Q 015441 301 GMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIPGRAIIISVIDNLVKGAS 380 (406)
Q Consensus 301 G~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~~~v~g~n~~~v~~~~~~~~~~~~~~~v~DNL~KGAA 380 (406)
||++|+|+++++++|.+|++++|+++|+++|||++.+++.+|+|++++|+|.|+||+..+...+++++|+++|||+||||
T Consensus 238 G~~~tv~v~~~~~~~~~~~~~~~~~~y~~~~~v~v~~~~~~p~~~~v~g~~~~~ig~~~d~~~~~~~~~~~~DNL~kGAA 317 (343)
T PRK00436 238 GILATIYARLKDPVTAEDVRAAYEEFYADEPFVRVLPEGQYPETKSVRGSNFCDIGFAVDERTGRLVVVSAIDNLVKGAA 317 (343)
T ss_pred cEEEEEEEEeCCCCCHHHHHHHHHHHhCCCCcEEEeCCCCCcchhhhCCCCeEEEEEEEcCCCCEEEEEEEecccchhHH
Confidence 99999999999999999999999999999999999987779999999999999999544545779999999999999999
Q ss_pred HHHHHHHHHHhCCCcccCCCCCCCCC
Q 015441 381 GQALQNLNIMLGFPENTGLLYQPLFP 406 (406)
Q Consensus 381 gqAVQ~~nl~~g~~e~~gl~~~~~~p 406 (406)
+|||||||+|+|||||+||+.+|+||
T Consensus 318 ~~Avq~~nl~~g~~e~~gl~~~~~~~ 343 (343)
T PRK00436 318 GQAVQNMNIMFGLDETTGLPLIPLYP 343 (343)
T ss_pred HHHHHHHHHHcCCCcccCCCcCCCCC
Confidence 99999999999999999999999998
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-79 Score=599.04 Aligned_cols=297 Identities=32% Similarity=0.481 Sum_probs=268.8
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
||+||||+|||||+|++|+|+|.+||+++++.+.++... .+ ..+++.+.++|+||+|+|+++
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~--~~----------------~~~~~~~~~~DvvFlalp~~~ 62 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK--DA----------------AARRELLNAADVAILCLPDDA 62 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC--cc----------------cCchhhhcCCCEEEECCCHHH
Confidence 678999999999999999999999999999999865432 11 011334568999999999999
Q ss_pred hHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhcccccc---chhhccCCcEEecCCChHHHHHH
Q 015441 142 TQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEI---SREDIKNARLVANPGCYPTSIQL 217 (406)
Q Consensus 142 s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~---~~~~i~~~~iVanPgC~tta~~l 217 (406)
++++++++ ++|++|||+|+|||+++ +++||+||+ ++++++++++|||||||+|+++|
T Consensus 63 s~~~~~~~~~~g~~VIDlSadfRl~~-------------------~~~yglPEvn~~~~~~i~~~~~IanPgC~~Ta~~l 123 (313)
T PRK11863 63 AREAVALIDNPATRVIDASTAHRTAP-------------------GWVYGFPELAPGQRERIAAAKRVANPGCYPTGAIA 123 (313)
T ss_pred HHHHHHHHHhCCCEEEECChhhhcCC-------------------CCeEEcCccCHHHHHHhhcCCeEEcCCcHHHHHHH
Confidence 99999986 78999999999999987 456899998 57788889999999999999999
Q ss_pred HHHHHHHccCCCcc-eEEEEEeeccCccCcchhhccc--HHHHhcCcccccCC-cccchhhhhhhhccccCCCceEEEEE
Q 015441 218 PLVPLIQANLIQYR-NIIIDAKSGVSGAGRGAKEANL--YSEIAEGIYSYGVT-RHRHVPEIEQGLTGFASSKVTVSFTP 293 (406)
Q Consensus 218 ~L~PL~~~~l~~i~-~i~v~t~~gvSGaG~~~~~~~~--~~e~~~ni~py~~~-~h~h~pEi~~~l~~i~~~~~~v~~t~ 293 (406)
+|+||++.++++-. .+++++++|+||||++++++++ +.++.+|++||+.+ .|||+|||+|.|+.+ .++.|||
T Consensus 124 aL~PL~~~~li~~~~~i~i~a~SG~SGAG~~~~~~~~~~~~~~~~n~~~Y~~~~~HrH~pEi~~~l~~~----~~~~F~P 199 (313)
T PRK11863 124 LLRPLVDAGLLPADYPVSINAVSGYSGGGKAMIAAYEAAPDGKAPAFRLYGLGLAHKHLPEMQAHAGLA----RRPIFTP 199 (313)
T ss_pred HHHHHHHcCCcccCceEEEEEccccccCCccchHHHhhhhhhhccCeeeccCCcCCcchHHHHHHhccc----cCcEEEe
Confidence 99999999876422 5899999999999999999998 99999999999999 999999999998654 4688999
Q ss_pred EEeeecceeEEEEEEEe---CCCCCHHHHHHHHHHHcCCCCcEEecCCCC-----ccccccccCCCcEEEEEEEeCcCCe
Q 015441 294 HLMPMIRGMQSTIYVEM---APGVTIEDLYQQLKISYEHEEFVKLLEKGV-----VPRTHNVRGSNYCLMNVFPDRIPGR 365 (406)
Q Consensus 294 ~rVPv~rG~~~ti~v~l---~~~~s~eev~~~l~~~y~~~~fV~v~~~~~-----~P~~~~v~g~n~~~v~~~~~~~~~~ 365 (406)
|.+|++|||++|+|+++ +++++.+|++++|+++|+++|||+|.+++. +|++++|.|+|+|+|++.++++.++
T Consensus 200 hl~p~~rGil~Ti~~~~~~~~~~~~~~~i~~~~~~~Y~~epfV~v~~~~~~~~~~~p~~~~v~gtn~~~i~v~~~~~~~~ 279 (313)
T PRK11863 200 SVGNFRQGMLVTVPLHLRLLPGGPTAEDLHAALADHYAGEAFVRVAPLDESAALDFLDPEALNGTNRLELFVFGNEDHGQ 279 (313)
T ss_pred eEccccCcEEEEEEEEecccCCCCCHHHHHHHHHHHcCCCCeEEEecCCcccccCCCCHHHhCCCCeEEEEEEEcCCCCE
Confidence 99999999999999997 888999999999999999999999998766 7889999999999999999888889
Q ss_pred EEEEEEehhhhHhHHHHHHHHHHHHhCCCcccCC
Q 015441 366 AIIISVIDNLVKGASGQALQNLNIMLGFPENTGL 399 (406)
Q Consensus 366 ~~~~~v~DNL~KGAAgqAVQ~~nl~~g~~e~~gl 399 (406)
+++++++|||+||||||||||||+|+|||||+||
T Consensus 280 ~~v~s~iDNL~KGAAGqAvQn~Nl~~G~~E~~GL 313 (313)
T PRK11863 280 AVLVARLDNLGKGASGAAVQNLNLMLGLDEATGL 313 (313)
T ss_pred EEEEEEcccccccHHHHHHHHHHHHcCCcccccC
Confidence 9999999999999999999999999999999998
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-76 Score=575.87 Aligned_cols=289 Identities=30% Similarity=0.473 Sum_probs=260.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.||+|+|||||+|.||+|+|.+||++|++.+++++. +.. . +. ++.++++|+||+|+|+++++
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~-----------~~~-----~-~~-~~~~~~~D~vFlalp~~~s~ 63 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR-----------KDA-----A-ER-AKLLNAADVAILCLPDDAAR 63 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc-----------cCc-----C-CH-hHhhcCCCEEEECCCHHHHH
Confidence 589999999999999999999999999999987643 110 0 00 12236799999999999999
Q ss_pred HHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhcccccc---chhhccCCcEEecCCChHHHHHHHH
Q 015441 144 EIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEI---SREDIKNARLVANPGCYPTSIQLPL 219 (406)
Q Consensus 144 ~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~---~~~~i~~~~iVanPgC~tta~~l~L 219 (406)
++++.+ ++|++|||+|+|||+++ +++||+||+ ++++|+++++|||||||+|+++|+|
T Consensus 64 ~~~~~~~~~g~~VIDlSadfRl~~-------------------~~~yglPEln~~~~~~i~~a~lIAnPgC~aTa~~LaL 124 (310)
T TIGR01851 64 EAVSLVDNPNTCIIDASTAYRTAD-------------------DWAYGFPELAPGQREKIRNSKRIANPGCYPTGFIALM 124 (310)
T ss_pred HHHHHHHhCCCEEEECChHHhCCC-------------------CCeEEccccCHHHHHhhccCCEEECCCCHHHHHHHHH
Confidence 999876 78999999999999986 457999999 7888899999999999999999999
Q ss_pred HHHHHccCCCcc-eEEEEEeeccCccCcchhhccc----HHHHhcCcccccCC-cccchhhhhhhhccccCCCceEEEEE
Q 015441 220 VPLIQANLIQYR-NIIIDAKSGVSGAGRGAKEANL----YSEIAEGIYSYGVT-RHRHVPEIEQGLTGFASSKVTVSFTP 293 (406)
Q Consensus 220 ~PL~~~~l~~i~-~i~v~t~~gvSGaG~~~~~~~~----~~e~~~ni~py~~~-~h~h~pEi~~~l~~i~~~~~~v~~t~ 293 (406)
+||++++++.-. .+++++++|+|||||+++++++ +.++.+|++||+++ .|||+|||+|.++.+ .+++|||
T Consensus 125 ~PL~~~~li~~~~~~~~~a~SG~SGAGr~~~~~l~~q~~~~e~~~~~~~Y~~~~~HrH~pEi~q~l~~~----~~v~FtP 200 (310)
T TIGR01851 125 RPLVEAGILPADFPITINAVSGYSGGGKAMIADYEQGSADNPSLQPFRIYGLALTHKHLPEMRVHSGLA----LPPIFTP 200 (310)
T ss_pred HHHHHcCCccccceEEEEeccccCccChhhhHHhhhcccchhhccCceeccCCCCCCcHHHHHHHhCCC----CCEEEEe
Confidence 999999876422 5889999999999999999998 89999999999999 999999999998654 5699999
Q ss_pred EEeeecceeEEEEEEEe---CCCCCHHHHHHHHHHHcCCCCcEEecCCCC-------ccccccccCCCcEEEEEEEeCcC
Q 015441 294 HLMPMIRGMQSTIYVEM---APGVTIEDLYQQLKISYEHEEFVKLLEKGV-------VPRTHNVRGSNYCLMNVFPDRIP 363 (406)
Q Consensus 294 ~rVPv~rG~~~ti~v~l---~~~~s~eev~~~l~~~y~~~~fV~v~~~~~-------~P~~~~v~g~n~~~v~~~~~~~~ 363 (406)
|.+|++||+++|+|+++ +++++.+|++++|+++|+++|||+|.+.+. +|+++++.|||+|+|++..+++.
T Consensus 201 hl~p~~RGil~Ti~~~l~~~~~~~~~~~~~~~~~~~Y~~epfVrv~~~~~~~~~~~~~p~~k~v~gtn~~~i~~~~d~~~ 280 (310)
T TIGR01851 201 AVGNFAQGMAVTIPLHLQTLASKVSPADIHAALADYYQGEQFVRVAPLDDVETLDNTFLDPQGLNGTNRLDLFVFGSDDG 280 (310)
T ss_pred EEccccCcEEEEEEEEeccCCCCCCHHHHHHHHHHHHCCCCcEEEecCCcccccccCCCChHHhCCCceEEEEEEEcCCC
Confidence 99999999999999999 888999999999999999999999987654 79999999999999999998889
Q ss_pred CeEEEEEEehhhhHhHHHHHHHHHHHHhCC
Q 015441 364 GRAIIISVIDNLVKGASGQALQNLNIMLGF 393 (406)
Q Consensus 364 ~~~~~~~v~DNL~KGAAgqAVQ~~nl~~g~ 393 (406)
+++++++++|||+||||||||||||+|+||
T Consensus 281 ~~~vv~saiDNL~KGAaGqAvQnmNlm~G~ 310 (310)
T TIGR01851 281 ERALLVARLDNLGKGASGAAVQNLNIMLGL 310 (310)
T ss_pred CEEEEEEEccccccchHHHHHHHHHHHcCC
Confidence 999999999999999999999999999997
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-74 Score=570.58 Aligned_cols=297 Identities=19% Similarity=0.284 Sum_probs=265.7
Q ss_pred CccEEEEECcccHHHHHHHHHHHc--CCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLAN--HPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~--hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
+++||||+|||||+|++|+|+|++ ||.++++.++|++++|+++.. .+.++. ++++++.+|.++|+||+|+|+
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~-----~~~~~~-v~~~~~~~~~~~Dvvf~a~p~ 76 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRF-----GGKSVT-VQDAAEFDWSQAQLAFFVAGR 76 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEE-----CCcceE-EEeCchhhccCCCEEEECCCH
Confidence 568999999999999999999998 999999999999999999983 343433 445555667899999999999
Q ss_pred cchHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccch---hhccCCcEEecCCChHHHH
Q 015441 140 GTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISR---EDIKNARLVANPGCYPTSI 215 (406)
Q Consensus 140 ~~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~---~~i~~~~iVanPgC~tta~ 215 (406)
++++++++.+ ++|++|||+|+||||++ ++| ||+||+|+ +.++++++|||||||||++
T Consensus 77 ~~s~~~~~~~~~~g~~VIDlS~~fRl~~--------~vP-----------~~lPEvn~~~l~~i~~~~iIAnPgC~~t~~ 137 (336)
T PRK08040 77 EASAAYAEEATNAGCLVIDSSGLFALEP--------DVP-----------LVVPEVNPFVLADYRNRNIIAVADSLTSQL 137 (336)
T ss_pred HHHHHHHHHHHHCCCEEEECChHhcCCC--------CCc-----------eEccccCHHHHhhhccCCEEECCCHHHHHH
Confidence 9999999986 78999999999999987 233 78888888 6667789999999999999
Q ss_pred HHHHHHHHHccCCCcceEEEEEeeccCccCcchhhc----------------ccHHH-HhcCcccc------cCCcccc-
Q 015441 216 QLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEA----------------NLYSE-IAEGIYSY------GVTRHRH- 271 (406)
Q Consensus 216 ~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~----------------~~~~e-~~~ni~py------~~~~h~h- 271 (406)
+|+|+||++.+ .+++|+|+||||+||||++++++ .+|.+ +++|++|| +...|||
T Consensus 138 ~laL~PL~~~~--~i~~viV~t~qgvSGAG~~~~~~L~~qt~~~~~~~~~~~~~f~~~i~~N~~pyi~~~~g~~~~erh~ 215 (336)
T PRK08040 138 LTAIKPLIDQA--GLSRLHVTNLLSASAHGKAAVDALAGQSAKLLNGIPIEEGFFGRQLAFNMLPLLPDSEGSVREERRL 215 (336)
T ss_pred HHHHHHHHHhC--CCeEEEEEeeccccccChhhHHHHHHHHHHhhcCCCcccccCchhhcCceeeccCCcCCcchHhhhh
Confidence 99999999985 56789999999999999999988 56655 88999999 8888999
Q ss_pred hhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCcccc-ccccCC
Q 015441 272 VPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRT-HNVRGS 350 (406)
Q Consensus 272 ~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~-~~v~g~ 350 (406)
.||+++.|+ ++.+.|+||||||||+|||++|+|++++++++.++++++|+++ |||++.+++.+|+| +++.|+
T Consensus 216 ~~Ei~kiL~---~~~~~vs~t~~~vPv~rG~~~tv~v~~~~~v~~~~i~~~l~~~----p~v~v~~~~~~P~~~~~v~g~ 288 (336)
T PRK08040 216 VDQVRKILQ---DEGLPISVSCVQSPVFYGHAQMVHFEALRPLAAEEARDALEQG----EDIVLSEENDYPTQVGDASGN 288 (336)
T ss_pred HHHHHHHhC---CCCCeEEEEeEEecchhcEEEEEEEEECCCCCHHHHHHHHhcC----CCEEEECCCCCCCchhHcCCC
Confidence 899998774 3567899999999999999999999999999999999999984 99999988889999 799999
Q ss_pred CcEEEEEEEeCc--CCeEEEEEEehhhhHhHHHHHHHHHHHHhC
Q 015441 351 NYCLMNVFPDRI--PGRAIIISVIDNLVKGASGQALQNLNIMLG 392 (406)
Q Consensus 351 n~~~v~~~~~~~--~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~g 392 (406)
|.|+||+.+++. ++++++|+++|||+|||||||||++|++.+
T Consensus 289 n~~~Vgr~~~~~~~~~~l~~~~~~DNL~KGAAg~AVQiae~l~~ 332 (336)
T PRK08040 289 PHLSIGCVRNDYGMPEQLQFWSVADNVRFGGALMAVKTAEKLVQ 332 (336)
T ss_pred ceEEEEEEEccCCCCCEEEEEEEehhHHHHHHHHHHHHHHHHHH
Confidence 999999999766 789999999999999999999999999865
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-71 Score=549.80 Aligned_cols=295 Identities=21% Similarity=0.328 Sum_probs=258.9
Q ss_pred CccEEEEECcccHHHHHHHHHHH--cCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLA--NHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~--~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
+|+||+|+|||||+|++|+|+|. +||..+++.+++++++|+++.. .+.++. ++..++++|.++|+||+|+|+
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~-----~~~~l~-~~~~~~~~~~~vD~vFla~p~ 76 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPF-----AGKNLR-VREVDSFDFSQVQLAFFAAGA 76 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeecc-----CCcceE-EeeCChHHhcCCCEEEEcCCH
Confidence 55899999999999999999999 7999999999999999998873 333332 444444557889999999999
Q ss_pred cchHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccC---CcEEecCCChHHHH
Q 015441 140 GTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKN---ARLVANPGCYPTSI 215 (406)
Q Consensus 140 ~~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~---~~iVanPgC~tta~ 215 (406)
+++.++++.+ ++|++|||+|+|||+++ +| |++||+|++.++. +++|||||||||++
T Consensus 77 ~~s~~~v~~~~~~G~~VIDlS~~fR~~~---------~p-----------l~lPEvn~~~i~~~~~~~iIAnPgC~~t~~ 136 (336)
T PRK05671 77 AVSRSFAEKARAAGCSVIDLSGALPSAQ---------AP-----------NVVPEVNAERLASLAAPFLVSSPSASAVAL 136 (336)
T ss_pred HHHHHHHHHHHHCCCeEEECchhhcCCC---------CC-----------EEecccCHHHHccccCCCEEECCCcHHHHH
Confidence 9999999876 88999999999999963 33 7888888888876 89999999999999
Q ss_pred HHHHHHHHHccCCCcceEEEEEeeccCccCcchhhc--ccHHHHhcCcccc-----------cCC---------cc----
Q 015441 216 QLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEA--NLYSEIAEGIYSY-----------GVT---------RH---- 269 (406)
Q Consensus 216 ~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~--~~~~e~~~ni~py-----------~~~---------~h---- 269 (406)
+++|+||++. +++++|+|+||||+||||++++++ .++.+.. |++|| ++. .|
T Consensus 137 ~laL~PL~~~--~~~~~v~v~t~~~vSGaG~~~~~~L~~~~~~~~-n~~~y~~~~~~~~iafn~~P~ig~~~~~gh~~eE 213 (336)
T PRK05671 137 AVALAPLKGL--LDIQRVQVTACLAVSSLGREGVSELARQTAELL-NARPLEPRFFDRQVAFNLLAQVGAPDAQGHTALE 213 (336)
T ss_pred HHHHHHHHHh--cCCCEEEEEEeecCcccCcccchHHHHHHHHHh-CCCCccccccccccccccccccCccccCCccHHH
Confidence 9999999854 788999999999999999999998 4455666 77888 654 68
Q ss_pred -cchhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCcccc-ccc
Q 015441 270 -RHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRT-HNV 347 (406)
Q Consensus 270 -~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~-~~v 347 (406)
||.||+++.|+. ..++|+||||||||+|||+.|+|++++++++.++++++|+++ |||++.+++.+|+| +++
T Consensus 214 ~r~~~Ei~kiL~~---~~~~v~~t~~~vPv~rG~~~tv~v~~~~~~~~~~~~~~l~~~----~~v~v~~~~~~p~~~~~v 286 (336)
T PRK05671 214 RRLVAELRQLLGL---PELKISVTCIQVPVFFGDSLSVALQSAAPVDLAAVNAALEAA----PGIELVEAGDYPTPVGDA 286 (336)
T ss_pred HHHHHHHHHHhCC---CCCcEEEEeEEechhhhEeeEEEEEECCCCCHHHHHHHHhCC----CCeEEeCCCCCCCChHHc
Confidence 899999998753 367799999999999999999999999999999999999944 99999988779999 699
Q ss_pred cCCCcEEEEEEEe--CcCCeEEEEEEehhhhHhHHHHHHHHHHHHhC
Q 015441 348 RGSNYCLMNVFPD--RIPGRAIIISVIDNLVKGASGQALQNLNIMLG 392 (406)
Q Consensus 348 ~g~n~~~v~~~~~--~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~g 392 (406)
.|+|.|+||+.++ .+++++++|+++|||+||||+|||||||++.+
T Consensus 287 ~g~~~~~vg~~~~~~~~~~~l~~~~~~DNL~kGAA~~AVq~~~~l~~ 333 (336)
T PRK05671 287 VGQDVVYVGRVRAGVDDPCQLNLWLTSDNVRKGAALNAVQVAELLIK 333 (336)
T ss_pred CCCCeEEEEEEEecCCCCCEEEEEEEehhHHHHHHHHHHHHHHHHHH
Confidence 9999999999997 45679999999999999999999999999865
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-70 Score=550.79 Aligned_cols=312 Identities=25% Similarity=0.395 Sum_probs=276.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe-ccCcCCccccccccCc-----cc--cCCCcccccCcccCCCCCEEEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT-ADRKAGQSIGSVFPHL-----IS--QDLPTMVAVKDADFSNVDAVFC 135 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~-s~~~~G~~i~~v~p~l-----~~--~~~~~~~~~~~~~~~~vDvVF~ 135 (406)
+||+|+||||++|++|+++|.+||.++++.+. ++.++|+.+..++|+. .+ .++ .++..+++.+.++|+||+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~DvVf~ 79 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDL-PIVEPEPVASKDVDIVFS 79 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCcccccee-EEEeCCHHHhccCCEEEE
Confidence 58999999999999999999999999999984 5567899888877762 11 111 233344445678999999
Q ss_pred cCCCcchHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCcEEecCCChHHH
Q 015441 136 CLPHGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTS 214 (406)
Q Consensus 136 al~~~~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~iVanPgC~tta 214 (406)
|+|++++.++++++ ++|++|||+|++|||++ +.||.+|++|.++ ||+||++|++++++++|||||||||+
T Consensus 80 a~p~~~s~~~~~~~~~~G~~VIDlsg~fR~~~--------~~~~~~p~vn~~~-~~~~e~~~~~~~~~~iVanPgC~~t~ 150 (341)
T TIGR00978 80 ALPSEVAEEVEPKLAEAGKPVFSNASNHRMDP--------DVPLIIPEVNSDH-LELLKVQKERGWKGFIVTNPNCTTAG 150 (341)
T ss_pred eCCHHHHHHHHHHHHHCCCEEEECChhhccCC--------CCceeccccCHHH-HhhHHhhhhhccCccEEeCCCcHHHH
Confidence 99999999999876 78999999999999998 5799999999998 99999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhcCcccccCCc-ccchhhhhhhhccccC-----CCce
Q 015441 215 IQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTR-HRHVPEIEQGLTGFAS-----SKVT 288 (406)
Q Consensus 215 ~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni~py~~~~-h~h~pEi~~~l~~i~~-----~~~~ 288 (406)
++|+|+||++++ ++++++|+|+||+||||+++.+ +.++++|++||..+. |||.|||++.|.+..+ +.++
T Consensus 151 ~~lal~pL~~~~--~i~~v~v~t~~gvSgaG~~~~~---~~~~~~Ni~py~~~~ehrh~~Ei~~il~~~~~~~~~~~~~~ 225 (341)
T TIGR00978 151 LTLALKPLIDAF--GIKKVHVTTMQAVSGAGYPGVP---SMDILDNIIPHIGGEEEKIERETRKILGKLENGKIEPAPFS 225 (341)
T ss_pred HHHHHHHHHHhC--CCcEEEEEEEEccCCCCCCCCc---cchhhCCeEecCcHHHHHHHHHHHHHhCccccCcccCCCce
Confidence 999999999985 5679999999999999999766 468999999999888 9999999999876544 3678
Q ss_pred EEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCC----------CCcEEecCCCCcccccccc--CCCc-EEE
Q 015441 289 VSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEH----------EEFVKLLEKGVVPRTHNVR--GSNY-CLM 355 (406)
Q Consensus 289 v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~----------~~fV~v~~~~~~P~~~~v~--g~n~-~~v 355 (406)
|+||||||||+|||++|+|++++++++.++++++|+++|+. +|||++.+++.+|+|+++. |+|+ |+|
T Consensus 226 v~~t~~~vPv~rG~~~tv~v~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~fv~~~~~~~~p~~~~~~~~g~~~~~~i 305 (341)
T TIGR00978 226 VSATTTRVPVLDGHTESVHVEFDKKFDIEEIREALKSFRGLPQKLGLPSAPEKPIIVRDEEDRPQPRLDRDAGGGMAVTV 305 (341)
T ss_pred EEEEEEEcCccccEEEEEEEEeCCCCCHHHHHHHHHhCcCccccccCCCCCCCcEEECCCCCCCCcceeeecCCCceEEE
Confidence 99999999999999999999999999999999999999999 9999999887799999887 9988 999
Q ss_pred EEEEeCcCCeEEEEEEehhhhHhHHHHHHHHHHHHh
Q 015441 356 NVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIML 391 (406)
Q Consensus 356 ~~~~~~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~ 391 (406)
|+.+ .+++++.+|+++|||+||||||||||||+|+
T Consensus 306 g~~~-~~~~~l~~~~~~DNl~kGaA~~avq~~n~~~ 340 (341)
T TIGR00978 306 GRLR-EEGGSLKYVVLGHNLVRGAAGATLLNAELAY 340 (341)
T ss_pred EeEE-CCCCeEEEEEEEchHHHHHHHHHHHHHHHHh
Confidence 9654 4577999999999999999999999999997
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-71 Score=550.37 Aligned_cols=299 Identities=21% Similarity=0.345 Sum_probs=262.5
Q ss_pred CccEEEEECcccHHHHHHHHHHHc--CCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLAN--HPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~--hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
+.+||+|+|||||+|++|+|+|++ ||.++++.+++.+++|+++.+ .+.++ .+++++++++.++|+||+|+|+
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~-----~~~~~-~v~~~~~~~~~~~D~vf~a~p~ 79 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF-----EGRDY-TVEELTEDSFDGVDIALFSAGG 79 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee-----cCcee-EEEeCCHHHHcCCCEEEECCCc
Confidence 347999999999999999999997 999999999999999999876 22233 2444555567889999999999
Q ss_pred cchHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCC-------cEEecCCCh
Q 015441 140 GTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNA-------RLVANPGCY 211 (406)
Q Consensus 140 ~~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~-------~iVanPgC~ 211 (406)
++++++++.+ ++|++|||+|++|||++ ++| ||+||+|++.++.. ++|||||||
T Consensus 80 ~~s~~~~~~~~~~g~~VIDlS~~fR~~~--------~~p-----------~~vPEvn~~~i~~~~~~~~~~~iIanPgC~ 140 (344)
T PLN02383 80 SISKKFGPIAVDKGAVVVDNSSAFRMEE--------GVP-----------LVIPEVNPEAMKHIKLGKGKGALIANPNCS 140 (344)
T ss_pred HHHHHHHHHHHhCCCEEEECCchhhcCC--------CCc-----------eECCCcCHHHHHhhhhcccCCcEEECCCcH
Confidence 9999999976 78999999999999988 455 67777777776654 399999999
Q ss_pred HHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhccc------------HHHHhcCcccccCCcccch-------
Q 015441 212 PTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANL------------YSEIAEGIYSYGVTRHRHV------- 272 (406)
Q Consensus 212 tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~------------~~e~~~ni~py~~~~h~h~------- 272 (406)
||+++|+|+||++++ .+++|+|+||||+||||++++++++ +.++.++.++|++..|+|.
T Consensus 141 ~t~~~laL~PL~~~~--~i~~vvv~t~~~vSGAG~~~~~~l~~q~~~~l~~~~~~~~~~~~~~ayn~~ph~~~~~~~g~~ 218 (344)
T PLN02383 141 TIICLMAVTPLHRHA--KVKRMVVSTYQAASGAGAAAMEELEQQTREVLEGKPPTCNIFAQQYAFNLFSHNAPMQENGYN 218 (344)
T ss_pred HHHHHHHHHHHHHcC--CeeEEEEEeeecccccCHHHHHHHHHHHHHHhcCCCCchhccCCccccccccccCccccCCCC
Confidence 999999999999985 4689999999999999999999865 5566778899999999998
Q ss_pred -hhhh--hhhcccc-CCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCC---CCccccc
Q 015441 273 -PEIE--QGLTGFA-SSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEK---GVVPRTH 345 (406)
Q Consensus 273 -pEi~--~~l~~i~-~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~---~~~P~~~ 345 (406)
||++ +++.+++ ++.++|+||||||||+|||++++|++++++++.++++++|+++ |||++.++ +.+|+|+
T Consensus 219 ~~E~~~~~e~~kil~~~~~~v~~t~~~vPv~rG~~~sv~v~~~~~v~~~~~~~~l~~~----p~v~v~~~~~~~~~p~p~ 294 (344)
T PLN02383 219 EEEMKLVKETRKIWNDDDVKVTATCIRVPVMRAHAESINLQFEKPLDEATAREILASA----PGVKIIDDRANNRFPTPL 294 (344)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEEEeEecCccccEEEEEEEEECCCCCHHHHHHHHhcC----CCCEEEeCCCcCCCCccc
Confidence 9998 8887777 5778999999999999999999999999999999999999984 89999876 4599999
Q ss_pred cccCCCcEEEEEEEeCcC----CeEEEEEEehhhhHhHHHHHHHHHHHHh
Q 015441 346 NVRGSNYCLMNVFPDRIP----GRAIIISVIDNLVKGASGQALQNLNIML 391 (406)
Q Consensus 346 ~v~g~n~~~v~~~~~~~~----~~~~~~~v~DNL~KGAAgqAVQ~~nl~~ 391 (406)
++.|+|.|+||+.|.+.. +++++|+++|||+||||||||||||+|+
T Consensus 295 ~v~g~~~v~Vgr~r~~~~~~~~~~l~~~~~~DNL~kGAAg~AVq~an~~~ 344 (344)
T PLN02383 295 DASNKDDVAVGRIRQDISQDGNKGLDIFVCGDQIRKGAALNAVQIAELLL 344 (344)
T ss_pred eeCCCceEEEEEEEccCCCCCCCeEEEEEEEhHHHHHHHHHHHHHHHhhC
Confidence 999999999999975421 5899999999999999999999999985
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-69 Score=538.65 Aligned_cols=315 Identities=23% Similarity=0.386 Sum_probs=277.2
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEE-eccCcCCccccccccC-----ccc--cCCCcccccCcccCCCCCEE
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLM-TADRKAGQSIGSVFPH-----LIS--QDLPTMVAVKDADFSNVDAV 133 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l-~s~~~~G~~i~~v~p~-----l~~--~~~~~~~~~~~~~~~~vDvV 133 (406)
||+||+|+||||++|++|+++|.+||+++++.+ .+++++|+.+..++|+ +.+ .++ .+...+++.+.++|+|
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~DvV 80 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADM-EVVSTDPEAVDDVDIV 80 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccce-EEEeCCHHHhcCCCEE
Confidence 458999999999999999999999999999999 7778899988877665 222 122 2333444556789999
Q ss_pred EEcCCCcchHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhc-cCCcEEecCCCh
Q 015441 134 FCCLPHGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDI-KNARLVANPGCY 211 (406)
Q Consensus 134 F~al~~~~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i-~~~~iVanPgC~ 211 (406)
|+|+|++++.++++++ ++|++|||+|++||+++ +.||..|++|+++ ||+||.+++++ ++.++|||||||
T Consensus 81 f~a~p~~~s~~~~~~~~~~G~~vIDls~~fR~~~--------~~~~~~p~vn~~~-yg~~e~~~~~~~~~~~iVa~p~C~ 151 (349)
T PRK08664 81 FSALPSDVAGEVEEEFAKAGKPVFSNASAHRMDP--------DVPLVIPEVNPEH-LELIEVQRKRRGWDGFIVTNPNCS 151 (349)
T ss_pred EEeCChhHHHHHHHHHHHCCCEEEECCchhcCCC--------CCCcCChhhCHHH-HcChHhhHhhccCCceEEEccCHH
Confidence 9999999999998876 78999999999999987 4789999999998 99999999888 778899999999
Q ss_pred HHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhcCcccccCCc-ccchhhhhhhhccccC-----C
Q 015441 212 PTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTR-HRHVPEIEQGLTGFAS-----S 285 (406)
Q Consensus 212 tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni~py~~~~-h~h~pEi~~~l~~i~~-----~ 285 (406)
||+++++|+||++. ++++++|+++||+||+|+++.+ +.++++|++||..+. |||.||+++.|+.+.+ .
T Consensus 152 ~t~~~l~l~pL~~~---gl~~i~v~~~~g~SgaG~~~~~---~~~~~~N~~p~~~~~ehrh~~Ei~~~l~~~~~~~~~~~ 225 (349)
T PRK08664 152 TIGLVLALKPLMDF---GIERVHVTTMQAISGAGYPGVP---SMDIVDNVIPYIGGEEEKIEKETLKILGKFEGGKIVPA 225 (349)
T ss_pred HHHHHHHHHHHHHC---CCcEEEEEEEeccccCCcccch---hhhhhcCcccccCchhhhhhHHHHHHhhhcccccccCC
Confidence 99999999999984 5689999999999999999876 468999999999887 9999999998876522 3
Q ss_pred CceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcC----------CCCcEEecCCCCccccccccCCCcEEE
Q 015441 286 KVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYE----------HEEFVKLLEKGVVPRTHNVRGSNYCLM 355 (406)
Q Consensus 286 ~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~----------~~~fV~v~~~~~~P~~~~v~g~n~~~v 355 (406)
.++|+||||||||+|||++++|++++++++.+|++++|+++|+ ++|||++.+++.+|+|+++.|+|+ +|
T Consensus 226 ~~~v~~t~~~vPv~rG~~~tv~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~fv~~~~~~~~p~~~~~~~~~~-~~ 304 (349)
T PRK08664 226 DFPISATCHRVPVIDGHTEAVFVKFKEDVDPEEIREALESFKGLPQELGLPSAPKKPIILFEEPDRPQPRLDRDAGD-GM 304 (349)
T ss_pred CceEEEEeEEccccccEEEEEEEEeCCCCCHHHHHHHHHhccCccccccCCCCCCceEEEeCCCCCCceeEEcccCC-ce
Confidence 6789999999999999999999999999999999999999999 999999998877999999999998 77
Q ss_pred EEEEe---CcCC-eEEEEEEehhhhHhHHHHHHHHHHHHhCC
Q 015441 356 NVFPD---RIPG-RAIIISVIDNLVKGASGQALQNLNIMLGF 393 (406)
Q Consensus 356 ~~~~~---~~~~-~~~~~~v~DNL~KGAAgqAVQ~~nl~~g~ 393 (406)
++..+ .+.+ ++++|+++|||+||||||||||||+|++.
T Consensus 305 ~~~v~~~~~~~~~~~~~~~~~DNl~kGaA~~avq~~n~~~~~ 346 (349)
T PRK08664 305 AVSVGRLREDGIFDIKFVVLGHNTVRGAAGASVLNAELLKKK 346 (349)
T ss_pred eEEECCeeecCCCCEEEEEEEhHHHHHHHHHHHHHHHHHHHc
Confidence 76665 3445 89999999999999999999999999864
|
|
| >KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-69 Score=498.20 Aligned_cols=331 Identities=50% Similarity=0.788 Sum_probs=291.0
Q ss_pred CCcccccccCcccccCCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccC--
Q 015441 46 PTKSLQVEDGKTQKSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVK-- 123 (406)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~-- 123 (406)
+.+++++++....++++.+||+++||.||+|.+|++++.+||.+|+..+++++.+|+++. +|+++..++.. +...|
T Consensus 2 ss~s~r~s~~~~~~~~k~~rv~LlGArGYTGknlv~Lin~HPylevthvssrel~Gqkl~-~ytk~eiqy~~-lst~D~~ 79 (340)
T KOG4354|consen 2 SSMSFRVSASSSVKPEKDIRVGLLGARGYTGKNLVRLINNHPYLEVTHVSSRELAGQKLE-VYTKLEIQYAD-LSTVDAV 79 (340)
T ss_pred ccccccccCCcccccCCCceEEEEeccccchhhHHHHhcCCCceEEEeeehhhhcCCccc-Ccchhheeecc-cchhhHH
Confidence 456777788888899999999999999999999999999999999999999999999988 78776543221 11111
Q ss_pred -cccCCCCCEEEEcCCCcchHHHHhhCC--CC-CEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccc-hhh
Q 015441 124 -DADFSNVDAVFCCLPHGTTQEIIKGLP--KS-LKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEIS-RED 198 (406)
Q Consensus 124 -~~~~~~vDvVF~al~~~~s~~~~~~l~--~G-~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~-~~~ 198 (406)
-+.-..+|.+.+++|..+.+.++...+ .| .++||+|+|+|+.+ | .+++|||||+| |++
T Consensus 80 klee~~avd~wvmaLPn~vckpfv~~~~s~~gks~iidlsad~rf~p-----------~------~~w~YGLpElndRe~ 142 (340)
T KOG4354|consen 80 KLEEPHAVDHWVMALPNQVCKPFVSLTESSDGKSRIIDLSADWRFQP-----------H------KEWVYGLPELNDRED 142 (340)
T ss_pred HhhcCCceeeeeeecchhhHHHHHHHHhhcCCceeeeecchhhcCCc-----------c------hheeecCcccccHHH
Confidence 011135788899999999988887652 34 58999999988754 3 46799999999 999
Q ss_pred ccCCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhcCcccccCCcccchhhhhhh
Q 015441 199 IKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQG 278 (406)
Q Consensus 199 i~~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni~py~~~~h~h~pEi~~~ 278 (406)
|+++++|||||||+|+++|.|-||++..+ .+ -.|..++|+||||+++.+.+.+.+.++|+.||+.+.|+|.+||++.
T Consensus 143 i~na~~iaNPGCYaTgsQl~l~Pllk~i~--g~-p~ifgvSGySGAGtkpspkNd~~~l~nnlipY~ltdHiHerEIs~r 219 (340)
T KOG4354|consen 143 IKNARLIANPGCYATGSQLPLVPLLKAIL--GK-PEIFGVSGYSGAGTKPSPKNDYSELANNLIPYGLTDHIHEREISQR 219 (340)
T ss_pred HhhhhhccCCCcccccCcccchHHHHHhc--CC-cceeeeccccCCCCCCCCccCHHHHhcCCccccccccchhHhHHHh
Confidence 99999999999999999999999999743 22 2488999999999999999999999999999999999999999985
Q ss_pred hccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCccccccccCCCcEEEEEE
Q 015441 279 LTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVF 358 (406)
Q Consensus 279 l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~~~v~g~n~~~v~~~ 358 (406)
+ +..|+|+||..|+|+|+..||||.+++.++.+|+++.|++.|.+|+||+|+++ +|-.++++|+++|.||.+
T Consensus 220 ~------k~~VaF~PHv~qwfqGi~lTi~vpmkksv~~~elr~lyk~~YedE~lvhV~dd--vPlvkdv~gsh~v~~ggF 291 (340)
T KOG4354|consen 220 S------KVTVAFTPHVMQWFQGIQLTIYVPMKKSVRTEELRQLYKTSYEDEELVHVLDD--VPLVKDVRGSHYVHMGGF 291 (340)
T ss_pred h------CCceeechhHHHHhhhceEEEEEeecCcccHHHHHHHHHhhccCcceeeeecc--ccceeccCCcceeEeccc
Confidence 4 45799999999999999999999999999999999999999999999999965 799999999999999999
Q ss_pred EeCcCC-eEEEEEEehhhhHhHHHHHHHHHHHHhCCCcccCCCCCCCCC
Q 015441 359 PDRIPG-RAIIISVIDNLVKGASGQALQNLNIMLGFPENTGLLYQPLFP 406 (406)
Q Consensus 359 ~~~~~~-~~~~~~v~DNL~KGAAgqAVQ~~nl~~g~~e~~gl~~~~~~p 406 (406)
-++.++ |.+++++||||+||||+||+||+|+|+|++|++||...|+||
T Consensus 292 ~~~~~g~Ravii~tIDNLlKGAatQaLQNlNl~~GY~EyaGi~~~~l~~ 340 (340)
T KOG4354|consen 292 PDRIPGDRAVIISTIDNLLKGAATQALQNLNLMLGYPEYAGILHQPLFP 340 (340)
T ss_pred cCCCCCceEEEEEehhhhhhhHHHHHHHhhhhhhCCccccCcccCcCCC
Confidence 887765 999999999999999999999999999999999999999997
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-67 Score=523.82 Aligned_cols=296 Identities=21% Similarity=0.365 Sum_probs=259.4
Q ss_pred ccEEEEECcccHHHHHHHHHHHc--CCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLAN--HPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~--hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
|+||+|+|||||+|++|+|+|.+ ||.++++++++++++|+.+.. .+.++. +.+.+..+|.++|+||+|+|++
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~-----~g~~i~-v~d~~~~~~~~vDvVf~A~g~g 74 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSF-----KGKELK-VEDLTTFDFSGVDIALFSAGGS 74 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeee-----CCceeE-EeeCCHHHHcCCCEEEECCChH
Confidence 47999999999999999999997 899999999999999988762 232332 3333344567899999999999
Q ss_pred chHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCC---cEEecCCChHHHHH
Q 015441 141 TTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNA---RLVANPGCYPTSIQ 216 (406)
Q Consensus 141 ~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~---~iVanPgC~tta~~ 216 (406)
.++++++++ ++|++|||+|++||+++ +.| |++||+|++.++.. ++|||||||||+++
T Consensus 75 ~s~~~~~~~~~~G~~VIDlS~~~R~~~--------~~p-----------~~lpevn~~~i~~~~~~~iVanp~C~~t~~~ 135 (334)
T PRK14874 75 VSKKYAPKAAAAGAVVIDNSSAFRMDP--------DVP-----------LVVPEVNPEALAEHRKKGIIANPNCSTIQMV 135 (334)
T ss_pred HHHHHHHHHHhCCCEEEECCchhhcCC--------CCC-----------eEcCCcCHHHHhhhhcCCeEECccHHHHHHH
Confidence 999999875 88999999999999986 222 88999999988765 79999999999999
Q ss_pred HHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhcCc-----------c----cccCCccc-------chhh
Q 015441 217 LPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGI-----------Y----SYGVTRHR-------HVPE 274 (406)
Q Consensus 217 l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni-----------~----py~~~~h~-------h~pE 274 (406)
++|+||+++ +++++++|+|+||+||||+++++++ +.++.+++ + +|++..|+ |.||
T Consensus 136 l~l~pL~~~--~~i~~i~vtt~~~~SGaG~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~a~niip~~~~~~~~gh~~e 212 (334)
T PRK14874 136 VALKPLHDA--AGIKRVVVSTYQAVSGAGKAGMEEL-FEQTRAVLNAAVDPVEPKKFPKPIAFNVIPHIDVFMDDGYTKE 212 (334)
T ss_pred HHHHHHHHh--cCceEEEEEEEechhhCChhhHHHH-HHHHHHHHhhccCCCCccccCccccCcccCcCCccccCCCcHH
Confidence 999999998 4678899999999999999999986 88888777 3 68888888 9999
Q ss_pred ---hhhhhcccc-CCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCC---CCccccccc
Q 015441 275 ---IEQGLTGFA-SSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEK---GVVPRTHNV 347 (406)
Q Consensus 275 ---i~~~l~~i~-~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~---~~~P~~~~v 347 (406)
|++++.+++ ++.++|+||||||||+|||+.++|++++++++.+|++++|+++ +||++.++ +.+|+|+++
T Consensus 213 E~ki~~el~~il~~~~~~v~~t~~rvPv~~G~~~ti~v~~~~~~~~~~v~~~l~~~----~~v~~~~~~~~~~~p~~~~v 288 (334)
T PRK14874 213 EMKMVNETKKILGDPDLKVSATCVRVPVFTGHSESVNIEFEEPISVEEAREILAEA----PGVVLVDDPENGGYPTPLEA 288 (334)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHHcC----CCCEEEeCCcccCCCCceee
Confidence 999898887 4778999999999999999999999999999999999999984 89999873 348999999
Q ss_pred cCCCcEEEEEEEe-Cc-CCeEEEEEEehhhhHhHHHHHHHHHHHH
Q 015441 348 RGSNYCLMNVFPD-RI-PGRAIIISVIDNLVKGASGQALQNLNIM 390 (406)
Q Consensus 348 ~g~n~~~v~~~~~-~~-~~~~~~~~v~DNL~KGAAgqAVQ~~nl~ 390 (406)
.|+|+|+||+++. .. ++++.+|+++|||+||||||||||||++
T Consensus 289 ~g~~~~~vg~~~~~~~~~~~l~~~~~~DNl~kGAA~~avq~~e~~ 333 (334)
T PRK14874 289 VGKDATFVGRIRKDLTVENGLHLWVVSDNLRKGAALNAVQIAELL 333 (334)
T ss_pred CCCcceEEeceEecCCCCCEEEEEEEEchHHHHHHHHHHHHHHHh
Confidence 9999999999654 33 5789999999999999999999999976
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-65 Score=508.97 Aligned_cols=300 Identities=20% Similarity=0.352 Sum_probs=250.3
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCce---EEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcC
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFG---IKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCL 137 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~e---lv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al 137 (406)
.+.+||||+|||||+|++|+++|++||+++ +..++|++++|+++. |.+.++ .++.+++++|.++|+||+|+
T Consensus 3 ~~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~-----~~~~~l-~v~~~~~~~~~~~Divf~a~ 76 (347)
T PRK06728 3 EKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQ-----FKGREI-IIQEAKINSFEGVDIAFFSA 76 (347)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCee-----eCCcce-EEEeCCHHHhcCCCEEEECC
Confidence 445799999999999999999999999998 888999999999985 344443 35556666778999999999
Q ss_pred CCcchHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCC-cEEecCCChHHHH
Q 015441 138 PHGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNA-RLVANPGCYPTSI 215 (406)
Q Consensus 138 ~~~~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~-~iVanPgC~tta~ 215 (406)
|+++++++++.+ ++|++|||+|++|||++ ++| |++||+|++.++++ ++||||||+||++
T Consensus 77 ~~~~s~~~~~~~~~~G~~VID~Ss~fR~~~--------~vp-----------lvvPEvN~e~i~~~~~iIanPnC~tt~~ 137 (347)
T PRK06728 77 GGEVSRQFVNQAVSSGAIVIDNTSEYRMAH--------DVP-----------LVVPEVNAHTLKEHKGIIAVPNCSALQM 137 (347)
T ss_pred ChHHHHHHHHHHHHCCCEEEECchhhcCCC--------CCC-----------eEeCCcCHHHHhccCCEEECCCCHHHHH
Confidence 999999999976 78999999999999976 355 67777777777764 7999999999999
Q ss_pred HHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhcCcc--cc--cCC-----------cccchhhhhh---
Q 015441 216 QLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIY--SY--GVT-----------RHRHVPEIEQ--- 277 (406)
Q Consensus 216 ~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni~--py--~~~-----------~h~h~pEi~~--- 277 (406)
+++|+||++++ ++++|+|+||||+||||++++++ +..|+...+. |. +.+ ..+.+|+|..
T Consensus 138 ~laL~PL~~~~--~i~~v~V~t~qavSGAG~~gv~e-L~~qt~~~l~~~~~~~~~f~~~~~~~~~~iafNviP~i~~~~~ 214 (347)
T PRK06728 138 VTALQPIRKVF--GLERIIVSTYQAVSGSGIHAIQE-LKEQAKSILAGEEVESTILPAKKDKKHYPIAFNVLPQVDIFTD 214 (347)
T ss_pred HHHHHHHHHcC--CccEEEEEEeecccccchhhHHH-HHHHHHHHhcCCCCccccccccccccCCceeccccCcCCcccc
Confidence 99999999985 56899999999999999999998 5566654322 11 111 1235677622
Q ss_pred ------------hhccccC-CCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCC---CCc
Q 015441 278 ------------GLTGFAS-SKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEK---GVV 341 (406)
Q Consensus 278 ------------~l~~i~~-~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~---~~~ 341 (406)
+..||++ +.++|++||+||||++||+.+++++|+++++.++++++|+++ +.|.+.++ +.|
T Consensus 215 ~g~t~EE~K~~~E~~KIL~~~~l~VsatcvRVPV~~gHs~sv~ve~~~~~~~~~~~~~l~~~----~gi~~~d~p~~~~~ 290 (347)
T PRK06728 215 NDFTFEEVKMIQETKKILEDPNLKMAATCVRVPVISGHSESVYIELEKEATVAEIKEVLFDA----PGVILQDNPSEQLY 290 (347)
T ss_pred CCccHHHHHHHHHHHHHhCCCCCcEEEEEEecceeccEEEEEEEEECCCCCHHHHHHHHHcC----CCCEEeCCCcccCC
Confidence 2346775 779999999999999999999999999999999999999987 55666654 349
Q ss_pred cccccccCCCcEEEEEEEeCc--CCeEEEEEEehhhhHhHHHHHHHHHHHHhC
Q 015441 342 PRTHNVRGSNYCLMNVFPDRI--PGRAIIISVIDNLVKGASGQALQNLNIMLG 392 (406)
Q Consensus 342 P~~~~v~g~n~~~v~~~~~~~--~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~g 392 (406)
|+|.++.|++.++|||+|.+. ++.+.+|+++||||||||+||||++|+++.
T Consensus 291 ptP~~~~g~~~v~VGRiR~d~~~~~~l~~w~~~DNlr~GAA~nav~iaE~l~~ 343 (347)
T PRK06728 291 PMPLYAEGKIDTFVGRIRKDPDTPNGFHLWIVSDNLLKGAAWNSVQIAETMVE 343 (347)
T ss_pred cCccccCCCCeEEEeCccccCCCCCeEEEEEEechHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998754 568999999999999999999999999864
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-65 Score=508.02 Aligned_cols=296 Identities=22% Similarity=0.353 Sum_probs=253.4
Q ss_pred EEEEECcccHHHHHHHHHHHc--CCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 65 RIGLLGASGYTGAEIVRLLAN--HPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~--hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
||+|+|||||+|++|+++|.+ ||.++++.+++.+++|+.+.. .+.++ .+.+++.++|.++|+||+|+|++.+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~-----~~~~~-~~~~~~~~~~~~~D~v~~a~g~~~s 74 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTF-----KGKEL-EVNEAKIESFEGIDIALFSAGGSVS 74 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeee-----CCeeE-EEEeCChHHhcCCCEEEECCCHHHH
Confidence 689999999999999999987 899999999999999998873 23232 2344445567889999999999999
Q ss_pred HHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCc---EEecCCChHHHHHHH
Q 015441 143 QEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNAR---LVANPGCYPTSIQLP 218 (406)
Q Consensus 143 ~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~---iVanPgC~tta~~l~ 218 (406)
+++++.+ ++|++|||+|++||+++ +.| |++||+|++.+++.+ +|||||||||+++++
T Consensus 75 ~~~a~~~~~~G~~VID~ss~~R~~~--------~~p-----------~~vpevN~~~i~~~~~~~iianp~C~~t~~~l~ 135 (339)
T TIGR01296 75 KEFAPKAAKCGAIVIDNTSAFRMDP--------DVP-----------LVVPEVNLEDLKEFNTKGIIANPNCSTIQMVVV 135 (339)
T ss_pred HHHHHHHHHCCCEEEECCHHHhCCC--------CCC-----------EEeCCcCHHHHhhCccCCEEECCCcHHHHHHHH
Confidence 9999876 88999999999999986 233 788888888886543 999999999999999
Q ss_pred HHHHHHccCCCcceEEEEEeeccCccCcchhhccc--------HHHHhc-------CcccccCC----cc-------cch
Q 015441 219 LVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANL--------YSEIAE-------GIYSYGVT----RH-------RHV 272 (406)
Q Consensus 219 L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~--------~~e~~~-------ni~py~~~----~h-------~h~ 272 (406)
|+||++++ ++++++|+|+||+||+|+++++++. +.+..+ ++.||... .| +|.
T Consensus 136 l~pL~~~~--~i~~i~vtt~~~vSgaG~~~~~~l~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~NiIp~~~~~~~~~~~ 213 (339)
T TIGR01296 136 LKPLHDEA--KIKRVVVSTYQAVSGAGNAGVEELYNQTKAKLEGRENNPYIGAPKAKKFPYQIAFNAIPHIDDFNDDGYT 213 (339)
T ss_pred HHHHHHhc--CccEEEEEeeechhhcChhhHHHHHHHHHHHhcCCCCCccccccccccCCCcccccccCcCCCcccCCCC
Confidence 99999984 5689999999999999999999721 122222 56677665 56 899
Q ss_pred hh---hhhhhccccC-CCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCC---CCccccc
Q 015441 273 PE---IEQGLTGFAS-SKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEK---GVVPRTH 345 (406)
Q Consensus 273 pE---i~~~l~~i~~-~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~---~~~P~~~ 345 (406)
|| |.+++.++++ +.++|+||||||||+|||++++|++++++++.+|++++|+++ +||++.++ +.+|+|+
T Consensus 214 ~Ee~ki~~el~~i~~~~~~~v~~t~~rVPv~~G~~~~v~v~~~~~v~~~~i~~~l~~~----~~v~v~~~~~~~~~p~~~ 289 (339)
T TIGR01296 214 KEETKMLFETRKIMGIPDFKVSATCVRVPVFTGHSESVNIEFEKEISPEDVRELLKNA----PGVVLIDDPSGNLYPTPL 289 (339)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEeEEccccccEEEEEEEEECCCCCHHHHHHHHhcC----CCCEEeCCCccCCCCCCe
Confidence 99 8888888877 678899999999999999999999999999999999999854 99999877 4589999
Q ss_pred cccCCCcEEEEEEEe-C-cCCeEEEEEEehhhhHhHHHHHHHHHHHHh
Q 015441 346 NVRGSNYCLMNVFPD-R-IPGRAIIISVIDNLVKGASGQALQNLNIML 391 (406)
Q Consensus 346 ~v~g~n~~~v~~~~~-~-~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~ 391 (406)
++.|+|+|+||+.|. . .++++++|+++|||+||||||||||||++.
T Consensus 290 ~v~g~~~~~ig~~r~d~~~~~~l~~~~~~DNl~kGAA~~Avq~~e~~~ 337 (339)
T TIGR01296 290 EAVGEDEVFVGRIRKDLSDDNGLHLWVVADNLRKGAALNSVQIAELLI 337 (339)
T ss_pred EeCCCCeEEEEEEEecCCCCCEEEEEEEEhhHHHHHHHHHHHHHHHHh
Confidence 999999999999964 3 467999999999999999999999999875
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PRK06901 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-62 Score=480.04 Aligned_cols=295 Identities=14% Similarity=0.179 Sum_probs=257.1
Q ss_pred ccEEEEECcccHHHHHHHHHHH--cCCCceEEEEecc-CcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLA--NHPYFGIKLMTAD-RKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~--~hp~~elv~l~s~-~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
+++||| ||||.+|++++++|+ ++|.-+++.+.++ +++|+++.+ .++++. ++.+++++|.++|++|| ++.
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f-----~g~~~~-V~~l~~~~f~~vDia~f-ag~ 74 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRF-----NNKAVE-QIAPEEVEWADFNYVFF-AGK 74 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccccccCCCEEEE-----CCEEEE-EEECCccCcccCCEEEE-cCH
Confidence 368999 999999999999998 5898899999998 999998874 565654 66777888999999999 999
Q ss_pred cchHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCcEEecCCChHHHHHHH
Q 015441 140 GTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLP 218 (406)
Q Consensus 140 ~~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~iVanPgC~tta~~l~ 218 (406)
++++++++.+ ++|+.|||+|++|||++ ++|+++||+|++.+.. +....||+||||+|++++++
T Consensus 75 ~~s~~~ap~a~~aG~~VIDnSsa~Rmd~--------dVPLVVPEVN~e~l~~--------~~~~~IIanPNCsTi~l~~a 138 (322)
T PRK06901 75 MAQAEHLAQAAEAGCIVIDLYGICAALA--------NVPVVVPSVNDEQLAE--------LRQRNIVSLPDPQVSQLALA 138 (322)
T ss_pred HHHHHHHHHHHHCCCEEEECChHhhCCC--------CCCeecccCCHHHHhc--------CcCCCEEECCcHHHHHHHHH
Confidence 9999999975 78999999999999998 7999999999998743 12356999999999999999
Q ss_pred HHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhc--CcccccCCcc----cchhhhhh----hhccccCCCc-
Q 015441 219 LVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAE--GIYSYGVTRH----RHVPEIEQ----GLTGFASSKV- 287 (406)
Q Consensus 219 L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~--ni~py~~~~h----~h~pEi~~----~l~~i~~~~~- 287 (406)
|+||++. +++++++|+|||++||+|++|+++ +..|+.. |.+||....| +.+|+|.+ +..||+ +.+
T Consensus 139 L~pL~~~--~~l~rv~VsTyQavSGaG~~gv~e-L~~qt~~~~n~~~~~~~~~~iAFNviP~ig~~m~~EtrKIl-~~l~ 214 (322)
T PRK06901 139 LAPFLQE--QPLSQIFVTSLLPASYTDAETVKK-LAGQTARLLNGIPLDEEEQRLAFDVFPANAQNLELQLQKIF-PQLE 214 (322)
T ss_pred HHHHHHh--cCCcEEEEEeecchhhcCHhHHHH-HHHHHHHHhCCCCCCCCceeeeccccccCCccHHHHHHHHh-CCcc
Confidence 9999987 799999999999999999999998 5555543 5567655544 46787753 445788 777
Q ss_pred eEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCcccccc---c-cCCCc--EEEEEEEeC
Q 015441 288 TVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHN---V-RGSNY--CLMNVFPDR 361 (406)
Q Consensus 288 ~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~~~---v-~g~n~--~~v~~~~~~ 361 (406)
+|+.||+||||++||+.+++++++++++.++++++|+++ |.|.+.++. ||+|.+ + .|++. ++|||.|.
T Consensus 215 ~VsaTcVRVPV~~GHs~sV~ve~e~~~~~e~~~~~l~~~----~gv~l~d~~-yPtPi~~~~~~~g~d~vvv~Vgrir~- 288 (322)
T PRK06901 215 NVTFHSIQVPVFYGLAQMVTALSEYELDIESQLAEWQQN----NLLRYHEEK-LITPVLNGENENGEESVKLHISQLSA- 288 (322)
T ss_pred cEEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHHhC----CCcEEeCCC-CCCCcccccccCCCCCccEEEEcccc-
Confidence 999999999999999999999999999999999999997 778888754 999987 5 79999 99999876
Q ss_pred cCCeEEEEEEehhhhHhHHHHHHHHHHHHh
Q 015441 362 IPGRAIIISVIDNLVKGASGQALQNLNIML 391 (406)
Q Consensus 362 ~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~ 391 (406)
.++.+.+|++.||||||||.||||++|++.
T Consensus 289 ~~~~l~lwvvaDNlRkGAA~NAVqIaE~l~ 318 (322)
T PRK06901 289 VENGVQFWSVADEQRFNLAFLAVKLLELIY 318 (322)
T ss_pred CCCEEEEEEEechHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999985
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-62 Score=487.16 Aligned_cols=303 Identities=15% Similarity=0.211 Sum_probs=241.2
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCce---EEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFG---IKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~e---lv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
|+||||+|||||+|++|+++|++||+++ ++.+++.++.|+. +.|.+.........++++|.++|+||||+|+
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~-----~~f~g~~~~v~~~~~~~~~~~~Divf~a~~~ 75 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAA-----PSFGGKEGTLQDAFDIDALKKLDIIITCQGG 75 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcc-----cccCCCcceEEecCChhHhcCCCEEEECCCH
Confidence 4799999999999999999888888877 8886665544443 3355544432222224567889999999999
Q ss_pred cchHHHHhhC-CCC--CEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCC-cEEecCCChHHHH
Q 015441 140 GTTQEIIKGL-PKS--LKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNA-RLVANPGCYPTSI 215 (406)
Q Consensus 140 ~~s~~~~~~l-~~G--~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~-~iVanPgC~tta~ 215 (406)
++++++++.+ ++| |.|||+|++|||++ ++|+++||+|++.+.+ ..... ++|+||||+||++
T Consensus 76 ~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~--------dvplvvPEvN~e~i~~-------~~~~g~~iIanPnC~tt~~ 140 (369)
T PRK06598 76 DYTNEVYPKLRAAGWQGYWIDAASTLRMKD--------DAIIILDPVNRDVIDD-------ALANGVKTFVGGNCTVSLM 140 (369)
T ss_pred HHHHHHHHHHHhCCCCeEEEECChHHhCCC--------CCcEEcCCcCHHHHHh-------hhhcCCCEEEcCChHHHHH
Confidence 9999999976 789 67999999999998 5777666666665421 01112 5899999999999
Q ss_pred HHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhcCc---------------------------ccc--cC
Q 015441 216 QLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGI---------------------------YSY--GV 266 (406)
Q Consensus 216 ~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni---------------------------~py--~~ 266 (406)
+++|+||++.+ .+++|+|+||||+||||++++++ +..|+...+ +++ ..
T Consensus 141 ~laL~PL~~~~--~i~~viVst~qavSGAG~~g~~e-L~~qt~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (369)
T PRK06598 141 LMALGGLFKND--LVEWVSVMTYQAASGAGARNMRE-LLTQMGALHGAVADELADPASAILDIDRKVTELMRSGDLPTDN 217 (369)
T ss_pred HHHHHHHHhcC--CceEEEEEeeecccccCHHHHHH-HHHHHHHHhhhccccccccchhhhhhhhhhhhhcccCCCCccc
Confidence 99999999974 56899999999999999999998 555554321 111 11
Q ss_pred C----cccchhhhhh---------------hhccccC---CCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHH
Q 015441 267 T----RHRHVPEIEQ---------------GLTGFAS---SKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLK 324 (406)
Q Consensus 267 ~----~h~h~pEi~~---------------~l~~i~~---~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~ 324 (406)
+ .++.+|+|.. +..||++ +.++|++||+||||++||+++++++|++++|.++++++|+
T Consensus 218 f~~~iafN~iP~I~~~~~~g~t~EE~K~~~EtrKIL~~~~~~l~vs~tcVRVPV~~gHs~sv~ve~~~~~~~~~i~~~L~ 297 (369)
T PRK06598 218 FGVPLAGSLIPWIDKDLGNGQSREEWKGQAETNKILGLTKNPIPVDGLCVRVGAMRCHSQALTIKLKKDVPLAEIEEILA 297 (369)
T ss_pred CCCcccccccCcCCCcccCCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHH
Confidence 2 2345777642 2336776 6889999999999999999999999999999999999999
Q ss_pred HHcCCCCcEEecCCC-----CccccccccCCCcEEEEEEEeC--cCCeEEEEEEehhhhHhHHHHHHHHHHHHh
Q 015441 325 ISYEHEEFVKLLEKG-----VVPRTHNVRGSNYCLMNVFPDR--IPGRAIIISVIDNLVKGASGQALQNLNIML 391 (406)
Q Consensus 325 ~~y~~~~fV~v~~~~-----~~P~~~~v~g~n~~~v~~~~~~--~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~ 391 (406)
++. ++|.+.+++ .||+|.++.|++.++|||+|.+ .++.+.+|+++||||||||+||+|++|++.
T Consensus 298 ~~~---~gv~v~d~~~~~~~~yptP~~~~g~~~v~VGRiR~d~~~~~~l~lw~v~DnlrkGAA~~~~~i~~~~~ 368 (369)
T PRK06598 298 AHN---PWVKVVPNDREATMRELTPAAVTGTLTIPVGRLRKLNMGPEYLSAFTVGDQLLWGAAEPLRRMLRILL 368 (369)
T ss_pred hcC---CCEEEecCccccccCCCCccccCCCCcEEEecccccCCCCCEEEEEEeechhhhhhHHHHHHHHHHHh
Confidence 853 778888752 3999999999999999999865 357899999999999999999999999875
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-58 Score=453.70 Aligned_cols=304 Identities=22% Similarity=0.317 Sum_probs=242.1
Q ss_pred ccEEEEECcccHHHHHHHHHHHc-CCCce-EEEEeccCcCCccccccccCccccCCCcccc-cCcccCCCCCEEEEcCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLAN-HPYFG-IKLMTADRKAGQSIGSVFPHLISQDLPTMVA-VKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~-hp~~e-lv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~-~~~~~~~~vDvVF~al~~ 139 (406)
|+||||+||||.||++++++|++ |+.++ +..++|.+++|+++.+ |.+..+...+. .+.++|.++|+||+|+|.
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~----f~~~~~~v~~~~~~~~~~~~~Divf~~ag~ 76 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIE----FGGKSIGVPEDAADEFVFSDVDIVFFAAGG 76 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCcccc----ccCccccCccccccccccccCCEEEEeCch
Confidence 47999999999999999999997 88887 7778899999998443 23322221111 345567899999999999
Q ss_pred cchHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCcEEecCCChHHHHHHH
Q 015441 140 GTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLP 218 (406)
Q Consensus 140 ~~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~iVanPgC~tta~~l~ 218 (406)
.+|+++++.+ ++|+.|||+|++|||++ ++|+++||+|++.+- |..+ ++ +||+||||+|..++++
T Consensus 77 ~~s~~~~p~~~~~G~~VIdnsSa~Rm~~--------DVPLVVPeVN~~~l~---~~~~---rg-~IianpNCst~~l~~a 141 (334)
T COG0136 77 SVSKEVEPKAAEAGCVVIDNSSAFRMDP--------DVPLVVPEVNPEHLI---DYQK---RG-FIIANPNCSTIQLVLA 141 (334)
T ss_pred HHHHHHHHHHHHcCCEEEeCCcccccCC--------CCCEecCCcCHHHHH---hhhh---CC-CEEECCChHHHHHHHH
Confidence 9999999987 78999999999999998 699999999999852 2221 12 5999999999999999
Q ss_pred HHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhc----------------CcccccCCc--ccch---hhhhh
Q 015441 219 LVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAE----------------GIYSYGVTR--HRHV---PEIEQ 277 (406)
Q Consensus 219 L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~----------------ni~py~~~~--h~h~---pEi~~ 277 (406)
|+||+++ +++++++|+|||++||||++++++ +..++.. |+.||.... .-+. -.+..
T Consensus 142 L~PL~~~--~~i~~v~VsTyQAvSGAG~~~~~e-l~~q~~~~~~~~~i~~~~~~iAfNviP~I~~~~~ng~t~EE~K~~~ 218 (334)
T COG0136 142 LKPLHDA--FGIKRVVVSTYQAVSGAGAEGGVE-LAGQTDALLNGIPILPIGYPLAFNVIPHIDGFLDNGYTKEEWKIEA 218 (334)
T ss_pred HHHHHhh--cCceEEEEEEeehhhhcCccchhh-HHHHHhhhccCcccccccccccccccccCCccccCCccHHHHHHHH
Confidence 9999998 578999999999999999988887 4445442 444543220 0000 11222
Q ss_pred hhccccC-CCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCC-cc-ccccccCCCcEE
Q 015441 278 GLTGFAS-SKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGV-VP-RTHNVRGSNYCL 354 (406)
Q Consensus 278 ~l~~i~~-~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~-~P-~~~~v~g~n~~~ 354 (406)
+..||++ +.++|++||+||||++||+++++++++++++.+|+++.+-... |.+.+.++.. +| ++.++.|++.+.
T Consensus 219 Et~KIlg~~~~~VsatcvRVPV~~GHse~v~ve~~~~~~~~e~~~~~l~~a---p~v~v~~~~~~~P~~~~d~~g~~~v~ 295 (334)
T COG0136 219 ETRKILGDPDIKVSATCVRVPVFYGHSEAVTVEFKKDVDPEEIREELLPSA---PGVVVVDNPEDRPQTPLDATGGDEVS 295 (334)
T ss_pred HHHHHhCCCCCceEEEEEEcceecccceEEEEEecCCCCHHHHHHHHhccC---CCcEEEeCCccCccChhhhcCCCceE
Confidence 3346777 8899999999999999999999999999999999997764443 5565555444 89 557899999999
Q ss_pred EEEEEeC--cCCeEEEEEEehhhhHhHHHHHHHHHHHHh
Q 015441 355 MNVFPDR--IPGRAIIISVIDNLVKGASGQALQNLNIML 391 (406)
Q Consensus 355 v~~~~~~--~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~ 391 (406)
|||+|.+ .++.+.+|++.||||||||+++||++|+++
T Consensus 296 VGRiR~d~~~~~~l~~~~v~dNl~~GAA~~av~iaE~L~ 334 (334)
T COG0136 296 VGRIRKDLSGPEGLKLWVVGDNLRKGAALNAVLIAELLL 334 (334)
T ss_pred EeEeeecCCCCCcEEEEEEechhhhhhHHHHHHHHHhhC
Confidence 9999976 345699999999999999999999999764
|
|
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-57 Score=451.46 Aligned_cols=299 Identities=15% Similarity=0.183 Sum_probs=246.9
Q ss_pred cEEEEECcccHHHHHHHHHHHc---CCCceEEEEeccCcCCccccccccCccccCCCcccccCcc-cCCCCCEEEEcCCC
Q 015441 64 VRIGLLGASGYTGAEIVRLLAN---HPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDA-DFSNVDAVFCCLPH 139 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~---hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~-~~~~vDvVF~al~~ 139 (406)
+||||+||||.||++++++|++ +|..+++.++++++.|+.+. +.+..+ .++.++++ +|.++|+||||+|.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~-----f~~~~~-~v~~~~~~~~~~~vDivffa~g~ 74 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPS-----FGGTTG-TLQDAFDIDALKALDIIITCQGG 74 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCC-----CCCCcc-eEEcCcccccccCCCEEEEcCCH
Confidence 4799999999999999999984 45567888888888888665 344444 35556554 78899999999999
Q ss_pred cchHHHHhhC-CCC--CEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCcE--EecCCChHHH
Q 015441 140 GTTQEIIKGL-PKS--LKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARL--VANPGCYPTS 214 (406)
Q Consensus 140 ~~s~~~~~~l-~~G--~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~i--VanPgC~tta 214 (406)
++++++++.+ ++| |.|||+|++|||++ ++|+++||+|++.+.. + ....+ |+||||+|++
T Consensus 75 ~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~--------dVPLVVPeVN~~~i~~-------~-~~~gi~~ianPNCst~~ 138 (366)
T TIGR01745 75 DYTNEIYPKLRESGWQGYWIDAASSLRMKD--------DAVIILDPVNQDVITD-------G-LNNGIRTFVGGNCTVSL 138 (366)
T ss_pred HHHHHHHHHHHhCCCCeEEEECChhhhcCC--------CCCEEeCCcCHHHHHh-------H-HhCCcCeEECcCHHHHH
Confidence 9999999976 789 88999999999998 6999999999986532 1 12346 8999999999
Q ss_pred HHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhcCcc---------------------------ccc--
Q 015441 215 IQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIY---------------------------SYG-- 265 (406)
Q Consensus 215 ~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni~---------------------------py~-- 265 (406)
++++|+||++. +++++++|+|||++||||++++++ +..|+...+. ++.
T Consensus 139 l~~aL~pL~~~--~~i~~v~VsTyQAvSGAG~~g~~e-L~~Qt~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~ 215 (366)
T TIGR01745 139 MLMSLGGLFAN--DLVEWVSVATYQAASGGGARHMRE-LLTQMGHLYGHVEDELATPSSAILDIERKVTKLTRSGELPVD 215 (366)
T ss_pred HHHHHHHHHhc--cCccEEEEEechhhhhcCHHHHHH-HHHHHHHHhccccccccccchhhhhhccccccccccCCCCcc
Confidence 99999999998 689999999999999999999998 5556543211 111
Q ss_pred CCc----ccchhhhhh---------------hhccccC--CCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHH
Q 015441 266 VTR----HRHVPEIEQ---------------GLTGFAS--SKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLK 324 (406)
Q Consensus 266 ~~~----h~h~pEi~~---------------~l~~i~~--~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~ 324 (406)
.+. .+.+|+|.. +..||++ +.++|++||+||||++||+++++++++++++.++++++|+
T Consensus 216 ~fp~~iafNvIP~Ig~~~~~g~t~EE~K~~~EtrKILg~~~~l~VsaTcVRVPV~~gHs~sv~ve~~~~vs~e~i~~~L~ 295 (366)
T TIGR01745 216 NFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILGTSSTIPVDGLCVRIGALRCHSQAFTIKLKKDVSLETIEEIIR 295 (366)
T ss_pred cCCCcccccccCcCCCccCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEEEecceeccEEEEEEEEECCCCCHHHHHHHHH
Confidence 112 345677642 2336776 5799999999999999999999999999999999999999
Q ss_pred HHcCCCCcEEecCCC---C--ccccccccCCCcEEEEEEEeC--cCCeEEEEEEehhhhHhHHHHHHHHHHHH
Q 015441 325 ISYEHEEFVKLLEKG---V--VPRTHNVRGSNYCLMNVFPDR--IPGRAIIISVIDNLVKGASGQALQNLNIM 390 (406)
Q Consensus 325 ~~y~~~~fV~v~~~~---~--~P~~~~v~g~n~~~v~~~~~~--~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~ 390 (406)
++. ++|.+.+++ . ||+|.++.|++.++|||+|.+ .++.+.+|+++||||||||++--..+|++
T Consensus 296 ~~~---~gv~v~d~~~~~~~~yptP~~~~G~d~v~VGRiR~d~~~~~~l~lw~v~DnlrkGAA~~~~~~~~~~ 365 (366)
T TIGR01745 296 AHN---PWVKVVPNDREITMRELTPAAVTGTLTIPVGRLRKLNMGPEYLSAFTVGDQLLWGAAEPLRRMLRIL 365 (366)
T ss_pred hCC---CCEEEecCCcccccCCcCCcccCCCCceEEeccccCCCCCCEEEEEEeechhhhhhHhHHHHHHHHh
Confidence 854 678888752 2 999999999999999999864 35789999999999999999999888876
|
|
| >KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-41 Score=312.60 Aligned_cols=315 Identities=20% Similarity=0.267 Sum_probs=248.1
Q ss_pred EEE-EECcccHHHHHHHHHHHcCCCceEEEE-eccCcCCccccccccCccccCCC------cccccCcccCCCCCEEEEc
Q 015441 65 RIG-LLGASGYTGAEIVRLLANHPYFGIKLM-TADRKAGQSIGSVFPHLISQDLP------TMVAVKDADFSNVDAVFCC 136 (406)
Q Consensus 65 kVa-IvGATG~vG~eLlrlL~~hp~~elv~l-~s~~~~G~~i~~v~p~l~~~~~~------~~~~~~~~~~~~vDvVF~a 136 (406)
|+| |+||||.|||+++-+|++||++++..+ +|.|++||++.+...|-...-+| .+++.+.+.|.++|+||+.
T Consensus 5 k~a~vlGaTGaVGQrFi~lLsdhP~f~ikvLgAS~RSAGK~ya~a~~wkqt~~lp~~~~e~~V~ec~~~~F~ecDIvfsg 84 (361)
T KOG4777|consen 5 KSAPVLGATGAVGQRFISLLSDHPYFSIKVLGASKRSAGKRYAFAGNWKQTDLLPESAHEYTVEECTADSFNECDIVFSG 84 (361)
T ss_pred cccceeeccchhHHHHHHHhccCCcceeeeecccccccCCceEecccchhcccccchhhhhhHhhcChhhcccccEEEec
Confidence 455 999999999999999999999999988 78999999998766553321111 1345566778999999999
Q ss_pred CCCcchHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccc-cchhhccCCcEEecCCChHHH
Q 015441 137 LPHGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTE-ISREDIKNARLVANPGCYPTS 214 (406)
Q Consensus 137 l~~~~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE-~~~~~i~~~~iVanPgC~tta 214 (406)
++...+.++.+.+ ++|..|+|++..||+.+ ++|+++|++|+++..|+.- +...+....-||+||||+|.+
T Consensus 85 ldad~ageiek~f~eag~iiVsNaknyRre~--------~VPLvvP~VNpehld~ik~~~~~~k~~~G~iI~nsNCSTa~ 156 (361)
T KOG4777|consen 85 LDADIAGEIEKLFAEAGTIIVSNAKNYRRED--------GVPLVVPEVNPEHLDGIKVGLDTGKMGKGAIIANSNCSTAI 156 (361)
T ss_pred CCchhhhhhhHHHHhcCeEEEeCchhcccCC--------CCceEecccCHHHhhhheeccccCCCCCceEEecCCCCeee
Confidence 9999999999986 89999999999999998 7999999999999866421 112234456799999999999
Q ss_pred HHHHHHHHHHccCC-CcceEEEEEeeccCccCcchhhcccHHHHhcCcccccCCcccchh-hhhhhhc----cccC----
Q 015441 215 IQLPLVPLIQANLI-QYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVP-EIEQGLT----GFAS---- 284 (406)
Q Consensus 215 ~~l~L~PL~~~~l~-~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni~py~~~~h~h~p-Ei~~~l~----~i~~---- 284 (406)
++++|+||+++ + .+++.+++|||+.||||.++..+. -++.+|+.||..+..+.+. |-...|. .+++
T Consensus 157 ~v~plkpL~~~--fgpi~~~~v~t~QAiSGAG~apgv~~--vdildnilp~iggee~k~ewet~kiL~s~n~~i~~~~l~ 232 (361)
T KOG4777|consen 157 CVMPLKPLHHH--FGPIKRMVVSTYQAISGAGAAPGVEL--VDILDNILPGIGGEENKFEWETAKILFSHNAPILDNGLN 232 (361)
T ss_pred EEeechhHHhh--ccchhhhhhhhhhhhccCCcCCCchH--HHHHHhhcCCCCccchhhhHHHHHhhhccCCcccccccc
Confidence 99999999998 5 578999999999999999776653 3778899999776543211 1111111 1111
Q ss_pred CCceEEEEEEEeeecceeEEEEEEEeCCC--CCHHHHHHHHHHH----------cCCCCcEEecCC--CCccccccccCC
Q 015441 285 SKVTVSFTPHLMPMIRGMQSTIYVEMAPG--VTIEDLYQQLKIS----------YEHEEFVKLLEK--GVVPRTHNVRGS 350 (406)
Q Consensus 285 ~~~~v~~t~~rVPv~rG~~~ti~v~l~~~--~s~eev~~~l~~~----------y~~~~fV~v~~~--~~~P~~~~v~g~ 350 (406)
.+..++..|.||||..||...+.+.++.+ .+.+|+.+.+.++ .+..+-|.+.++ +++|+|+.+++.
T Consensus 233 ee~~vsaqcnRv~v~Dgh~~cis~~f~~~~~pa~~qv~~~l~eyv~d~~klgc~sapkq~iyv~dd~apdrPqPrldrN~ 312 (361)
T KOG4777|consen 233 EEEMVSAQCNRVIVNDGHVKCISTCFRVPVMPAHAQVVNLLFEYVLDENKLGCISAPKQGIYVIDDRAPDRPQPRLDRNK 312 (361)
T ss_pred HHHhhhhhcceeeEecCceEEEEEEeecCCCCcHHHHHHHHHhccCChhhcccccCCCCeEEEecCCCCCCCCccccccc
Confidence 23458999999999999999999999743 4789999988875 245677888876 789999999999
Q ss_pred Cc---EEEEEEEeCcCC--e---EEEEEEehhhhHhHHHHHHHHHHHHh
Q 015441 351 NY---CLMNVFPDRIPG--R---AIIISVIDNLVKGASGQALQNLNIML 391 (406)
Q Consensus 351 n~---~~v~~~~~~~~~--~---~~~~~v~DNL~KGAAgqAVQ~~nl~~ 391 (406)
+. |.|||+|.+... . +....++|..+||++.++||+++.++
T Consensus 313 d~gy~VsVGRIR~D~~~D~kfv~L~hnt~~gaag~G~l~aev~ia~~Ll 361 (361)
T KOG4777|consen 313 DDGYGVSVGRIRRDVSQDGKFVVLDHNTCGGAAGKGALLAEVQIAEMLL 361 (361)
T ss_pred CCCceeeeeeeecccccccceEEEEeeeehhhhcchhHHHHHHHHhhcC
Confidence 88 999999876432 2 34668888889999999999987653
|
|
| >PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=279.26 Aligned_cols=292 Identities=13% Similarity=0.126 Sum_probs=208.2
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-----ccccccccCccc-------------cCCCccc--c
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-----QSIGSVFPHLIS-------------QDLPTMV--A 121 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-----~~i~~v~p~l~~-------------~~~~~~~--~ 121 (406)
|++||||+| .|++||.++|.+.+++++|++++++..+.. .+++++|+.|.+ +.+.... +
T Consensus 1 m~~~i~inG-fGRIGr~~~r~~~~~~~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~v~~~~d 79 (331)
T PRK15425 1 MTIKVGING-FGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERD 79 (331)
T ss_pred CceEEEEEe-eChHHHHHHHHHHHCCCCEEEEEecCCCHHHHHHHHccccCCCCcCCcEEecCCEEEECCeEEEEEEcCC
Confidence 357999999 999999999998777899999999743322 367788877642 2222221 2
Q ss_pred cCcccCC--CCCEEEEcCCCcchHHHHhh-CCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhh
Q 015441 122 VKDADFS--NVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISRED 198 (406)
Q Consensus 122 ~~~~~~~--~vDvVF~al~~~~s~~~~~~-l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~ 198 (406)
.++.+|. ++|+||+|+|.+.+++.++. +++|+++||+|++ +++ ++|+.+|++|.+.
T Consensus 80 p~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap--~~~--------~vp~vV~gVN~~~----------- 138 (331)
T PRK15425 80 PANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGP--SKD--------NTPMFVKGANFDK----------- 138 (331)
T ss_pred hhhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCC--CCC--------CCCEEEcccCHHH-----------
Confidence 3344576 99999999999999999875 6899999999998 455 4677777776653
Q ss_pred ccCCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhccc------HHHHhcCcccccCCcc---
Q 015441 199 IKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANL------YSEIAEGIYSYGVTRH--- 269 (406)
Q Consensus 199 i~~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~------~~e~~~ni~py~~~~h--- 269 (406)
+...++||||+|+|++++++|+||++. ++++++.|+|+|++|++ |...+..+ .++++.|+.|...+..
T Consensus 139 ~~~~~IISnaSCtTn~Lapvlk~L~~~--fgI~~g~mTTvha~T~~-q~llD~~~~~d~r~~R~aa~NiIPt~tGaa~av 215 (331)
T PRK15425 139 YAGQDIVSNASCTTNCLAPLAKVINDN--FGIIEGLMTTVHATTAT-QKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAV 215 (331)
T ss_pred cCCCCEEECCCcHHHHHHHHHHHHHHh--CCeEEEEEEEEEeccCc-cccccCCCCcccccCcchhhceecccCCchHHH
Confidence 333679999999999999999999998 79999999999999999 76665432 1467788888765532
Q ss_pred -cchhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCcccc-ccc
Q 015441 270 -RHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRT-HNV 347 (406)
Q Consensus 270 -~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~-~~v 347 (406)
+.+|++.+ +++.+++||||++||+.+++++++++++.||++++|+++..+ ++-.++.=.+-|-. .+.
T Consensus 216 ~kIlP~L~g----------kl~g~avRVPv~~gs~~dltv~l~~~~t~eev~~al~~aa~~-~l~gil~~~~~~~VS~D~ 284 (331)
T PRK15425 216 GKVLPELNG----------KLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEG-EMKGVLGYTEDDVVSTDF 284 (331)
T ss_pred HhhccccCC----------eEEEEEEEecccCeEEEEEEEEECCCCCHHHHHHHHHHHhhc-cccccccccCCcEeeeec
Confidence 22343332 499999999999999999999999999999999999998543 44333321111322 133
Q ss_pred cCCCcEEE-E--EEEeCcCCeEEEEEEehhhhHhHHHHHHHHHHHH
Q 015441 348 RGSNYCLM-N--VFPDRIPGRAIIISVIDNLVKGASGQALQNLNIM 390 (406)
Q Consensus 348 ~g~n~~~v-~--~~~~~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~ 390 (406)
.|+.+-.| - -..--..+-+-+++--|| -+|=+-+-+..+..|
T Consensus 285 ~~~~~ssi~d~~~t~v~~~~~~k~~~WyDN-E~gys~r~~d~~~~~ 329 (331)
T PRK15425 285 NGEVCTSVFDAKAGIALNDNFVKLVSWYDN-ETGYSNKVLDLIAHI 329 (331)
T ss_pred CCCCcceEEEcccCEEecCCEEEEEEEecC-chhHHHHHHHHHHHH
Confidence 34332111 1 000001233457777888 566666666655544
|
|
| >PRK13535 erythrose 4-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=278.69 Aligned_cols=297 Identities=13% Similarity=0.119 Sum_probs=202.5
Q ss_pred ccEEEEECcccHHHHHHHHHHHcC---CCceEEEEeccCcCC-----ccccccccCcc-------------ccCCCccc-
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANH---PYFGIKLMTADRKAG-----QSIGSVFPHLI-------------SQDLPTMV- 120 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~h---p~~elv~l~s~~~~G-----~~i~~v~p~l~-------------~~~~~~~~- 120 (406)
|+||||+|+ |+|||.++|+|.+. ++++++++++..... .++++.|+.|. ++.+....
T Consensus 1 ~~~IaInGf-GrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~~i~v~~~ 79 (336)
T PRK13535 1 TIRVAINGF-GRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDDAIRLLHE 79 (336)
T ss_pred CeEEEEECc-CHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEc
Confidence 479999997 99999999998852 578898887532211 13344444332 33333222
Q ss_pred -ccCcccC--CCCCEEEEcCCCcchHHHHhh-CCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccch
Q 015441 121 -AVKDADF--SNVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISR 196 (406)
Q Consensus 121 -~~~~~~~--~~vDvVF~al~~~~s~~~~~~-l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~ 196 (406)
+.++.+| .++|+||+|+|.+.++++++. +++|+++||+|+++|+++ +. .++|++|.+.. .
T Consensus 80 ~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~--------~~-~vV~gVN~~~~-~------ 143 (336)
T PRK13535 80 RDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDL--------DA-TVVYGVNHDQL-R------ 143 (336)
T ss_pred CCcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCC--------CC-eEEeCcCHHHh-C------
Confidence 2334467 599999999999999999986 589999999999998764 22 57777776643 1
Q ss_pred hhccCCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHH-----HHhcCcccccCCcccc
Q 015441 197 EDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYS-----EIAEGIYSYGVTRHRH 271 (406)
Q Consensus 197 ~~i~~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~-----e~~~ni~py~~~~h~h 271 (406)
...+|||||+|+|++++++|+||+++ ++|+++.|+|+|++| +|++++|+++.. .++.|+.|.+.+.
T Consensus 144 ---~~~~IISnasCTTn~Lap~lk~L~~~--fgI~~~~mTT~ha~t-~~Q~~vD~~~~d~rr~r~~a~NiIP~~tga--- 214 (336)
T PRK13535 144 ---AEHRIVSNASCTTNCIIPVIKLLDDA--FGIESGTVTTIHSAM-NDQQVIDAYHPDLRRTRAASQSIIPVDTKL--- 214 (336)
T ss_pred ---cCCCEEECCchHHHHHHHHHHHHHHh--cCeeEEEEEEEEhhc-CCcchhhchhhccccccEeeeccccCccHH---
Confidence 12579999999999999999999998 799999999999999 889999986421 1234666653321
Q ss_pred hhhhhhhhccccC-CCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCcccc-ccccC
Q 015441 272 VPEIEQGLTGFAS-SKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRT-HNVRG 349 (406)
Q Consensus 272 ~pEi~~~l~~i~~-~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~-~~v~g 349 (406)
.+.+.++++ -+.+++.+++||||++||+.+++++++++++.|+++++|+++..+ ++-.++.-.+-|-. .+-.|
T Consensus 215 ----a~a~~kilP~l~gkv~~~avRVPv~~gs~~dl~v~~~~~~t~eei~~~l~~a~~~-~l~gil~~~~~~~VS~D~~~ 289 (336)
T PRK13535 215 ----AAGITRIFPQFNDRFEAISVRVPTINVTAIDLSVTVKKPVKVNEVNQLLQKAAQG-AFHGIVDYTELPLVSIDFNH 289 (336)
T ss_pred ----HhhhhhcccCCCCcEEEEEEEeCccCcEEEEEEEEECCCCCHHHHHHHHHHhhhc-cccccccccCCCccccccCC
Confidence 222333332 122499999999999999999999999999999999999998433 43333321111221 12333
Q ss_pred CCc-EEEEEEE--eCcCCeEEEEEEehhhhHhHHHHHHHHHHHHh
Q 015441 350 SNY-CLMNVFP--DRIPGRAIIISVIDNLVKGASGQALQNLNIML 391 (406)
Q Consensus 350 ~n~-~~v~~~~--~~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~ 391 (406)
+.+ +-+-... --..+-+-+++--|| -+|=|-+-+..+..|.
T Consensus 290 ~~~s~i~d~~~t~~~~~~~~k~~~WyDN-E~gys~r~~d~~~~~~ 333 (336)
T PRK13535 290 DPHSAIVDGTQTRVSGAHLIKTLVWCDN-EWGFANRMLDTTLAMA 333 (336)
T ss_pred CCcceEEEcccCEEECCCEEEEEEEEcC-chHHHHHHHHHHHHHh
Confidence 332 1111110 001222346666799 5677777777766653
|
|
| >PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-33 Score=274.35 Aligned_cols=296 Identities=14% Similarity=0.133 Sum_probs=208.7
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccC-cCC-----ccccccccCcc-------------ccCCCccc--
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR-KAG-----QSIGSVFPHLI-------------SQDLPTMV-- 120 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~-~~G-----~~i~~v~p~l~-------------~~~~~~~~-- 120 (406)
|++||+|+|. |.+|+.++|.+.++++++++++.+.. +.. .+++++|+.|. ++.+....
T Consensus 1 m~ikigInG~-GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~ 79 (334)
T PRK08955 1 MTIKVGINGF-GRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNK 79 (334)
T ss_pred CCeEEEEECc-CHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecC
Confidence 3589999997 99999999998888999999998622 211 25677777664 23332221
Q ss_pred ccCcccCCCCCEEEEcCCCcchHHHHhh-CCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhc
Q 015441 121 AVKDADFSNVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDI 199 (406)
Q Consensus 121 ~~~~~~~~~vDvVF~al~~~~s~~~~~~-l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i 199 (406)
+.++.+|.++|+||+|+|.+.++++++. +++|+++||+|++ |+++ ++|+++|++|.+..-+
T Consensus 80 ~~~~~~w~gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap-~~d~--------d~p~vV~gVN~~~~~~--------- 141 (334)
T PRK08955 80 AIADTDWSGCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAP-VKEE--------GVLNIVMGVNDHLFDP--------- 141 (334)
T ss_pred ChhhCCccCCCEEEEccchhhcHHHHHHHHHCCCEEEEECCC-CCCC--------CCceEecccCHHHhcc---------
Confidence 2345568899999999999999999986 5899999999999 8875 4788888888764310
Q ss_pred cCCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhccc-----HHHHhcCcccccCCcc----c
Q 015441 200 KNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANL-----YSEIAEGIYSYGVTRH----R 270 (406)
Q Consensus 200 ~~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~-----~~e~~~ni~py~~~~h----~ 270 (406)
...+|||||+|+|++++++|+||+++ ++|+++.|+|+|++|.. +...+..+ .++++.|+.|...+.. +
T Consensus 142 ~~~~IISnasCtTn~Lap~lk~L~~~--fgI~~~~mTTvha~t~~-q~lld~~~~d~r~~r~~a~NiIP~~tGaa~a~~k 218 (334)
T PRK08955 142 AIHPIVTAASCTTNCLAPVVKVIHEK--LGIKHGSMTTIHDLTNT-QTILDAPHKDLRRARACGMSLIPTTTGSATAITE 218 (334)
T ss_pred cCCCEEECCccHHHHHHHHHHHHHHh--cCeeEEEEEEEEeccCc-cccccCCCcccccchhheeccccccCCCccccce
Confidence 12579999999999999999999998 79999999999999976 44344222 1466778888654432 2
Q ss_pred chhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCcccc-ccccC
Q 015441 271 HVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRT-HNVRG 349 (406)
Q Consensus 271 h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~-~~v~g 349 (406)
.+|++.+ +++.+++||||++||+.+++++++++++.||++++|+++. +.++-.++.-.+-|-. .+-.|
T Consensus 219 vlP~L~g----------kl~~~avRVPv~~gs~~dl~v~~~~~~s~eev~~~l~~a~-~~~l~gil~~~~~~~vS~D~~~ 287 (334)
T PRK08955 219 IFPELKG----------KLNGHAVRVPLANASLTDCVFEVERDTTVEEVNALLKEAA-EGELKGILGYEERPLVSIDYKT 287 (334)
T ss_pred EccccCC----------cEEEEEEEeccCCeEEEEEEEEECCCCCHHHHHHHHHHhc-CCCcCceeccccCCcccceeCC
Confidence 2343332 4999999999999999999999999999999999999873 4344333321111211 12223
Q ss_pred CCcEEE---EEEEeCcCCeEEEEEEehhhhHhHHHHHHHHHHHHh
Q 015441 350 SNYCLM---NVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIML 391 (406)
Q Consensus 350 ~n~~~v---~~~~~~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~ 391 (406)
+.+--| ....--..+-+-+++--|| -+|=|-+-+-.+..|.
T Consensus 288 ~~~s~i~d~~~t~~~~~~~~k~~~WyDN-E~gys~r~~dl~~~~~ 331 (334)
T PRK08955 288 DPRSSIVDALSTMVVNGTQVKLYAWYDN-EWGYANRTAELARKVG 331 (334)
T ss_pred CCchHheehhcCEEecCCEEEEEEEeCC-chhHHHHHHHHHHHHh
Confidence 321111 0000001233457777999 5666766676666553
|
|
| >PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=270.65 Aligned_cols=295 Identities=13% Similarity=0.133 Sum_probs=213.5
Q ss_pred ccEEEEECcccHHHHHHHHHHHcC--CCceEEEEeccCcCC-----ccccccccCccc-------------cCCCccccc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANH--PYFGIKLMTADRKAG-----QSIGSVFPHLIS-------------QDLPTMVAV 122 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~h--p~~elv~l~s~~~~G-----~~i~~v~p~l~~-------------~~~~~~~~~ 122 (406)
|+||||+| .|+|||.++|.+.+. ++++++++++..... .+++++|+.|.+ +.+......
T Consensus 1 ~~ki~ING-fGRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~I~v~~~~ 79 (337)
T PRK07403 1 MIRVAING-FGRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISADENSITVNGKTIKCVSDR 79 (337)
T ss_pred CeEEEEEc-cChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEEEcCCEEEECCEEEEEEEcC
Confidence 68999999 999999999987755 689999998743222 266777777642 233323323
Q ss_pred C--cccCC--CCCEEEEcCCCcchHHHHhh-CCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchh
Q 015441 123 K--DADFS--NVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISRE 197 (406)
Q Consensus 123 ~--~~~~~--~vDvVF~al~~~~s~~~~~~-l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~ 197 (406)
+ +.+|. ++|+||+|+|.+.+++.++. +++|+++||+|++ |.++ ++|.++|++|.+.. .
T Consensus 80 dp~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap-~~d~--------d~p~vV~gVN~~~~-~------- 142 (337)
T PRK07403 80 NPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAP-GKGE--------DIGTYVVGVNHHEY-D------- 142 (337)
T ss_pred CcccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCC-CCCC--------CCceEecccCHHHh-c-------
Confidence 2 33565 89999999999999998875 5889999999995 7654 46888887776632 1
Q ss_pred hccCCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccH-----HHHhcCcccccCCcc---
Q 015441 198 DIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLY-----SEIAEGIYSYGVTRH--- 269 (406)
Q Consensus 198 ~i~~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~-----~e~~~ni~py~~~~h--- 269 (406)
. ...++||||+|+|++++++|+||+++ ++|+++.++|+|++|+.+ +.+|.+|. +.++.|++|...+..
T Consensus 143 ~-~~~~IISnasCTTn~Lap~lkvL~~~--fgI~~~~mTTiha~T~~q-~~~D~~~~d~r~~raaa~NiIPt~tGaakav 218 (337)
T PRK07403 143 H-EDHNIISNASCTTNCLAPIAKVLHDN--FGIIKGTMTTTHSYTGDQ-RILDASHRDLRRARAAAVNIVPTSTGAAKAV 218 (337)
T ss_pred c-CCCCEEECCcHHHHHHHHHHHHHHHh--cCeeEEEEEEEeeecCCc-ccccccccccccccccccccccCCcchhhhh
Confidence 0 13579999999999999999999998 799999999999999997 67776543 356789999877653
Q ss_pred -cchhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCcccc-ccc
Q 015441 270 -RHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRT-HNV 347 (406)
Q Consensus 270 -~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~-~~v 347 (406)
+++|++++ +++.+++|||+..||+.+++++++++++.|||+++|+++.++ ++-.++.=.+-|-. .+-
T Consensus 219 ~~vlP~L~g----------ki~g~avRVPt~~vs~~dl~v~l~k~~t~eeI~~~~~~as~~-~l~gil~~~~~~~VS~D~ 287 (337)
T PRK07403 219 ALVIPELKG----------KLNGIALRVPTPNVSVVDLVVQVEKRTITEQVNEVLKDASEG-PLKGILEYSDLPLVSSDY 287 (337)
T ss_pred hhcCcccCC----------cEEEEEEEeccCCcEEEEEEEEECCCCCHHHHHHHHHHHhhC-ccccccCeecCCEeeeee
Confidence 35666654 589999999999999999999999999999999999998643 43333321111222 123
Q ss_pred cCCCcEEE-EEEEe--CcCCeEEEEEEehhhhHhHHHHHHHHHHHHh
Q 015441 348 RGSNYCLM-NVFPD--RIPGRAIIISVIDNLVKGASGQALQNLNIML 391 (406)
Q Consensus 348 ~g~n~~~v-~~~~~--~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~ 391 (406)
.|+.+-.| -.... -..+-+-+++--|| -.|=|-+-+..++.|.
T Consensus 288 ~~~~~s~i~D~~~t~v~~~~~~k~~~WyDN-E~Gys~r~~dl~~~~~ 333 (337)
T PRK07403 288 RGTDASSIVDASLTMVMGGDMVKVIAWYDN-EWGYSQRVVDLAELVA 333 (337)
T ss_pred cCCCCCEEEEcccCEEecCCEEEEEEEecC-chhHHHHHHHHHHHHH
Confidence 33322111 11000 01222447777999 6777777787777764
|
|
| >TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=271.90 Aligned_cols=234 Identities=13% Similarity=0.106 Sum_probs=179.3
Q ss_pred EEEEECcccHHHHHHHHHHHcC---CCceEEEEeccCcCC-----ccccccccCcc-------------ccCCCccc--c
Q 015441 65 RIGLLGASGYTGAEIVRLLANH---PYFGIKLMTADRKAG-----QSIGSVFPHLI-------------SQDLPTMV--A 121 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~h---p~~elv~l~s~~~~G-----~~i~~v~p~l~-------------~~~~~~~~--~ 121 (406)
||||+|+ |.||+.++|+|.+. +.++++++.+..+.. .+++++|+.|. ++.+..+. +
T Consensus 1 ~IaInGf-GrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~ 79 (325)
T TIGR01532 1 RVAINGF-GRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPT 79 (325)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCC
Confidence 6999996 99999999998864 469999998643321 24566666652 23333221 2
Q ss_pred cCcccC--CCCCEEEEcCCCcchHHHHhh-CCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhh
Q 015441 122 VKDADF--SNVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISRED 198 (406)
Q Consensus 122 ~~~~~~--~~vDvVF~al~~~~s~~~~~~-l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~ 198 (406)
.++.+| .++|+||+|+|...++++++. +++|+++||+|+++|+++ ++ .++|++|.+..-
T Consensus 80 p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~--------~~-~vV~gVN~~~~~--------- 141 (325)
T TIGR01532 80 PEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDL--------DA-TIVYGVNQQDLS--------- 141 (325)
T ss_pred hhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCC--------Cc-eEEeccCHHHhC---------
Confidence 234457 589999999999999999875 589999999999998754 23 567777766431
Q ss_pred ccCCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHH-----HHhcCcccccCCcccchh
Q 015441 199 IKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYS-----EIAEGIYSYGVTRHRHVP 273 (406)
Q Consensus 199 i~~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~-----e~~~ni~py~~~~h~h~p 273 (406)
...+|||||+|+|++++++|+||+++ ++++++.|+|+|++|+ |++++|+++.. ....|+.|.+.+.++.
T Consensus 142 -~~~~IISnasCtTn~lap~lk~L~~~--fgI~~~~~tTvha~t~-~q~~vD~~~~d~r~~r~a~~NiIP~~t~~a~a-- 215 (325)
T TIGR01532 142 -AEHTIVSNASCTTNCIVPLIKLLDDA--IGIESGTITTIHSAMN-DQQVIDAYHHDLRRTRAASQSIIPVDTKLARG-- 215 (325)
T ss_pred -CCCCEEeCCCcHHHHHHHHHHHHHHh--cCeeEEEEEEEEhhcC-CccccccchhhccccchHhhCeeeCCccHHHH--
Confidence 12579999999999999999999998 7999999999999999 89999986431 2334888875544321
Q ss_pred hhhhhhccccCCCc--eEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCC
Q 015441 274 EIEQGLTGFASSKV--TVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEH 329 (406)
Q Consensus 274 Ei~~~l~~i~~~~~--~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~ 329 (406)
+.+++ +.+ +++.+++||||++||+.+++++++++++.|+++++|+++..+
T Consensus 216 -----~~kil-P~L~gkl~~~avRVPv~~~s~~dl~v~~~~~~~~eev~~~l~~a~~~ 267 (325)
T TIGR01532 216 -----IERLF-PEFAGRFEAIAVRVPTVNVTALDLSVTTKRDVKANEVNRVLREAAQG 267 (325)
T ss_pred -----HHHhC-cccCCeEEEEEEEecccCcEEEEEEEEECCCCCHHHHHHHHHHhhcc
Confidence 22222 222 599999999999999999999999999999999999998543
|
Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species. |
| >PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-32 Score=271.66 Aligned_cols=293 Identities=12% Similarity=0.118 Sum_probs=207.8
Q ss_pred cCCccEEEEECcccHHHHHHHHHHHcC--CCceEEEEeccCcCC-----ccccccccCcc--------------ccCCCc
Q 015441 60 SEKQVRIGLLGASGYTGAEIVRLLANH--PYFGIKLMTADRKAG-----QSIGSVFPHLI--------------SQDLPT 118 (406)
Q Consensus 60 ~~~~ikVaIvGATG~vG~eLlrlL~~h--p~~elv~l~s~~~~G-----~~i~~v~p~l~--------------~~~~~~ 118 (406)
.+|++||||+|+ |.|||.++|+|.+. |.++++++++..... .++++.|+.|. ++.+..
T Consensus 57 ~~~~~kVaInGf-GrIGR~vlr~l~~~~~~~~evvaINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~v 135 (395)
T PLN03096 57 TEAKIKVAINGF-GRIGRNFLRCWHGRKDSPLDVVAINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIKV 135 (395)
T ss_pred cccccEEEEECc-CHHHHHHHHHHHhCCCCCeEEEEEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCEEEEE
Confidence 356689999997 99999999998854 889999887633211 14455544432 233332
Q ss_pred ccc--cCcccC--CCCCEEEEcCCCcchHHHHhh-CCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccc
Q 015441 119 MVA--VKDADF--SNVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTE 193 (406)
Q Consensus 119 ~~~--~~~~~~--~~vDvVF~al~~~~s~~~~~~-l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE 193 (406)
... .++.+| .++|+||+|+|.+.+++.++. +++|+++||+|++ +++ +.|.++|++|.+.. .
T Consensus 136 ~~~~dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap--~~~--------~~ptvV~GVN~~~l-~--- 201 (395)
T PLN03096 136 VSDRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP--GKG--------DIPTYVVGVNADDY-K--- 201 (395)
T ss_pred EEcCCcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCC--CCC--------CCCeEeCccCHHHh-c---
Confidence 222 234457 589999999999999999875 6899999999998 444 46778887776632 1
Q ss_pred cchhhccCCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccH-----HHHhcCcccccCCc
Q 015441 194 ISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLY-----SEIAEGIYSYGVTR 268 (406)
Q Consensus 194 ~~~~~i~~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~-----~e~~~ni~py~~~~ 268 (406)
...+|||||+|+|++++++++||+++ ++|+++.|+|+|++|+. +...|..|. ++++.|+.|...+.
T Consensus 202 ------~~~~IISnaSCTTn~LAp~lkvL~~~--fGI~~g~mTTiHa~T~~-Q~llD~~~~d~rr~Raaa~NiIPtsTGa 272 (395)
T PLN03096 202 ------HSDPIISNASCTTNCLAPFVKVLDQK--FGIIKGTMTTTHSYTGD-QRLLDASHRDLRRARAAALNIVPTSTGA 272 (395)
T ss_pred ------cCCCEEECCchHHHHHHHHHHHHHHh--cCeeEEEEEEEEccccc-cccccCCCCccccchhhhccccccCCCc
Confidence 12579999999999999999999998 79999999999999999 555564332 56778999987664
Q ss_pred c----cchhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCc---EEecCCCCc
Q 015441 269 H----RHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEF---VKLLEKGVV 341 (406)
Q Consensus 269 h----~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~f---V~v~~~~~~ 341 (406)
. +.+|++.+ +++.+++||||++||+.+++++++++++.|+++++|+++.++ ++ +.+.++
T Consensus 273 akav~kVlP~L~g----------kl~g~avRVPv~~gs~~dltv~~~~~~t~eev~~al~~aa~~-~l~gil~~~~~--- 338 (395)
T PLN03096 273 AKAVALVLPNLKG----------KLNGIALRVPTPNVSVVDLVVQVEKKTFAEEVNAAFRDAAEK-ELKGILAVCDE--- 338 (395)
T ss_pred chhhhhcccccCC----------cEEEEEEEccccceEEEEEEEEECCCCCHHHHHHHHHhhhhc-cccceEEEeCC---
Confidence 3 33455443 499999999999999999999999999999999999998543 32 233322
Q ss_pred ccc-ccccCCCcEEE-EE-E-EeCcCCeEEEEEEehhhhHhHHHHHHHHHHHHh
Q 015441 342 PRT-HNVRGSNYCLM-NV-F-PDRIPGRAIIISVIDNLVKGASGQALQNLNIML 391 (406)
Q Consensus 342 P~~-~~v~g~n~~~v-~~-~-~~~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~ 391 (406)
|-. .+-.|..+-.| .. . .--..+-+-+++--|| -+|=|-+-+..+..|.
T Consensus 339 p~VS~Df~~~~~Ssi~d~~~t~v~~~~~vKv~~WYDN-E~Gys~r~~dl~~~~~ 391 (395)
T PLN03096 339 PLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDN-EWGYSQRVVDLADIVA 391 (395)
T ss_pred CEeeeeecCCCCceEEEcccCEEeCCCEEEEEEEecC-chhHHHHHHHHHHHHH
Confidence 221 12333332222 10 0 0001223347777899 5777777777777664
|
|
| >PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-32 Score=268.03 Aligned_cols=293 Identities=15% Similarity=0.120 Sum_probs=206.6
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEecc-CcCC-----ccccccccCccc-------------cCCCccccc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD-RKAG-----QSIGSVFPHLIS-------------QDLPTMVAV 122 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~-~~~G-----~~i~~v~p~l~~-------------~~~~~~~~~ 122 (406)
|++||||+| .|++||.++|.+.+.++++++++++. .+.. .+++++|+.|.+ +.+..+..-
T Consensus 1 m~~ki~ING-fGRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~~~~~~ 79 (337)
T PTZ00023 1 MVVKLGING-FGRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVHVFFEK 79 (337)
T ss_pred CceEEEEEC-cChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEEEEeCC
Confidence 558999999 99999999999887789999999872 2221 367888887742 222222222
Q ss_pred Ccc--cC--CCCCEEEEcCCCcchHHHHhh-CCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchh
Q 015441 123 KDA--DF--SNVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISRE 197 (406)
Q Consensus 123 ~~~--~~--~~vDvVF~al~~~~s~~~~~~-l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~ 197 (406)
++. .| .++|+||+|+|.+.++++++. +++|+++||+|+ ++++ ++|+++|++|.+...
T Consensus 80 dp~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSa--p~~~--------~vp~vV~gVN~~~~~-------- 141 (337)
T PTZ00023 80 DPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSA--PPKD--------DTPIYVMGVNHTQYD-------- 141 (337)
T ss_pred ChhhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCC--CCCC--------CCCeEEcccCHHHhC--------
Confidence 222 35 389999999999999999986 589999999999 4665 478888888877431
Q ss_pred hccCCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhccc------H--HHHhcCcccccCCcc
Q 015441 198 DIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANL------Y--SEIAEGIYSYGVTRH 269 (406)
Q Consensus 198 ~i~~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~------~--~e~~~ni~py~~~~h 269 (406)
...+|||||+|+|++++++|+||+++ ++|+++.++|+|++|.. |...+..+ . ++++.|+.|...+..
T Consensus 142 --~~~~IISnasCTTn~Lap~lk~L~~~--fgI~~~~~TT~ha~T~~-Q~lld~~~~~~kd~r~~r~~a~NiIP~~tGaa 216 (337)
T PTZ00023 142 --KSQRIVSNASCTTNCLAPLAKVVNDK--FGIVEGLMTTVHASTAN-QLTVDGPSKGGKDWRAGRCAGVNIIPASTGAA 216 (337)
T ss_pred --CCCCEEECCccHHHHHHHHHHHHHHh--cCeeEEEEEEEEecCCC-ceecCCcCcccCCCcccceeeccccccCCCcc
Confidence 12579999999999999999999998 79999999999999965 43444321 1 356778888765532
Q ss_pred ----cchhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCcccc-
Q 015441 270 ----RHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRT- 344 (406)
Q Consensus 270 ----~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~- 344 (406)
+.+||++. +++.+++|||+++||+.+++++++++++.||++++|+++.++ ++-.++.=.+-|-.
T Consensus 217 kav~kVlPeL~g----------kl~g~avRVPt~~~s~~dltv~l~k~vt~eev~~al~~aa~~-~l~gil~~~~~~~VS 285 (337)
T PTZ00023 217 KAVGKVIPELNG----------KLTGMAFRVPVPDVSVVDLTCKLAKPAKYEEIVAAVKKAAEG-PLKGILGYTDDEVVS 285 (337)
T ss_pred hhhhheecccCC----------cEEEEEEEecccCeEEEEEEEEECCCCCHHHHHHHHHHHhcc-cccCCcCccCCCeee
Confidence 23344432 599999999999999999999999999999999999998543 44333321111222
Q ss_pred ccccCCCc-EEEEEEEe--CcCCeEEEEEEehhhhHhHHHHHHHHHHHH
Q 015441 345 HNVRGSNY-CLMNVFPD--RIPGRAIIISVIDNLVKGASGQALQNLNIM 390 (406)
Q Consensus 345 ~~v~g~n~-~~v~~~~~--~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~ 390 (406)
.+-.|+.+ +-+-.... -..+-+-+++--|| -.|=|-+-+..+..|
T Consensus 286 ~D~~~~~~s~i~d~~~t~v~~~~~~k~~~WyDN-E~gys~r~~d~~~~~ 333 (337)
T PTZ00023 286 SDFVHDKRSSIFDVKAGIALNDTFVKLVSWYDN-EWGYSNRLLDLAHYI 333 (337)
T ss_pred eecCCCCCCeEEEcccCeEecCCEEEEEEEecC-chhHHHHHHHHHHHH
Confidence 12333332 22211100 01233447777899 566666666666655
|
|
| >PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-32 Score=267.14 Aligned_cols=294 Identities=12% Similarity=0.149 Sum_probs=211.5
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-----ccccccccCccc-------------cCCCccc--c
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-----QSIGSVFPHLIS-------------QDLPTMV--A 121 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-----~~i~~v~p~l~~-------------~~~~~~~--~ 121 (406)
|++||||+| .|++||.++|.+.+.+++|++++++..+.. .+++++|+.|.+ +.+.... +
T Consensus 1 m~~ki~ING-fGRIGR~~~r~~~~~~~~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~I~v~~~~d 79 (343)
T PRK07729 1 MKTKVAING-FGRIGRMVFRKAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKKIRLLNNRD 79 (343)
T ss_pred CceEEEEEC-cChHHHHHHHHHhhcCCcEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcCC
Confidence 558999999 999999999998777899999998743322 267777777642 2222222 2
Q ss_pred cCcccC--CCCCEEEEcCCCcchHHHHhh-CCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhh
Q 015441 122 VKDADF--SNVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISRED 198 (406)
Q Consensus 122 ~~~~~~--~~vDvVF~al~~~~s~~~~~~-l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~ 198 (406)
.++.+| .++|+||+|+|.+.++++++. +++|+++||+|+. |+++ +.|+ ++++|.+ .
T Consensus 80 p~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap-~~d~--------d~~l-V~gVN~~-----------~ 138 (343)
T PRK07729 80 PKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAP-GKNE--------DVTI-VVGVNED-----------Q 138 (343)
T ss_pred hhhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCC-CCCC--------CCcE-EecccHH-----------H
Confidence 223457 589999999999999999876 5899999999975 7764 3454 4466555 3
Q ss_pred cc--CCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccH-----HHHhcCcccccCCcc--
Q 015441 199 IK--NARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLY-----SEIAEGIYSYGVTRH-- 269 (406)
Q Consensus 199 i~--~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~-----~e~~~ni~py~~~~h-- 269 (406)
+. ..++||||+|+|++++++|+||+++ ++|+++.++|+|++|+. ++.+|+++. +....|+.|.+.+..
T Consensus 139 ~~~~~~~IISnaSCTTn~Lap~lk~L~~~--fgI~~~~mTTiha~T~~-Q~~~D~~~~d~rr~R~a~~niiPtstgaa~a 215 (343)
T PRK07729 139 LDIEKHTIISNASCTTNCLAPVVKVLDEQ--FGIENGLMTTVHAYTND-QKNIDNPHKDLRRARACGQSIIPTTTGAAKA 215 (343)
T ss_pred hccCCCCEEECCchHHHHHHHHHHHHHHh--cCeeEEEEEEEecccCc-ccccccchhhhhcccccccceecCCCcchhh
Confidence 33 3579999999999999999999998 79999999999999996 888887642 124568888765542
Q ss_pred --cchhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCcccc-cc
Q 015441 270 --RHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRT-HN 346 (406)
Q Consensus 270 --~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~-~~ 346 (406)
+.+|++.+ +++.+++|||+++||+.+++++++++++.|+|+++|+++.++ ++-.++.=.+.|-. .+
T Consensus 216 i~~viP~l~g----------kl~g~avRVPt~~~s~~dltv~l~k~~t~eev~~~l~~a~~~-~l~gil~~~~~~~VS~D 284 (343)
T PRK07729 216 LAKVLPHLNG----------KLHGMALRVPTPNVSLVDLVVDVKRDVTVEEINEAFKTAANG-ALKGILEFSEEPLVSID 284 (343)
T ss_pred HHHhccccCC----------eEEEEEEEeeecCeEEEEEEEEECCCCCHHHHHHHHHHHhhC-chhhccCccCCCccccc
Confidence 45777765 689999999999999999999999999999999999998543 44434331111221 13
Q ss_pred ccCCCc-EEEEEEEeC--cCCeEEEEEEehhhhHhHHHHHHHHHHHHhC
Q 015441 347 VRGSNY-CLMNVFPDR--IPGRAIIISVIDNLVKGASGQALQNLNIMLG 392 (406)
Q Consensus 347 v~g~n~-~~v~~~~~~--~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~g 392 (406)
-.|..+ +-+-..... ..+-+-+++--|| -.|=|-+-+-.+..|..
T Consensus 285 ~~~~~~s~i~D~~~t~v~~~~~~K~~~WYDN-E~Gys~r~~dl~~~~~~ 332 (343)
T PRK07729 285 FNTNTHSAIIDGLSTMVMGDRKVKVLAWYDN-EWGYSCRVVDLVTLVAD 332 (343)
T ss_pred cCCCCcceEEEcccCeEecCCEEEEEEEecC-chHHHHHHHHHHHHHHh
Confidence 334332 111111000 1233457777999 56777777777766643
|
|
| >PLN02358 glyceraldehyde-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-31 Score=261.78 Aligned_cols=296 Identities=13% Similarity=0.123 Sum_probs=205.8
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccC-cCC-----ccccccccCccc---------------cCCCcc
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR-KAG-----QSIGSVFPHLIS---------------QDLPTM 119 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~-~~G-----~~i~~v~p~l~~---------------~~~~~~ 119 (406)
.+++||||+| .|++|+..+|.+.++|+++++++++.. ... .+++++|+.|.+ +.+...
T Consensus 3 ~~~lrVaI~G-~GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~ 81 (338)
T PLN02358 3 DKKIRIGING-FGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 81 (338)
T ss_pred CCceEEEEEe-ecHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEE
Confidence 3468999999 999999999998888999999998732 211 356777776642 112111
Q ss_pred cccC--cccC--CCCCEEEEcCCCcchHHHHhh-CCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhcccccc
Q 015441 120 VAVK--DADF--SNVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEI 194 (406)
Q Consensus 120 ~~~~--~~~~--~~vDvVF~al~~~~s~~~~~~-l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~ 194 (406)
...+ +.+| .++|+||+|+|.+.++++++. +++|+++||+|+.. + ++|+++|++|.+.. .
T Consensus 82 ~~~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~---~--------dvp~iV~gVN~~~~-~---- 145 (338)
T PLN02358 82 GIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPS---K--------DAPMFVVGVNEHEY-K---- 145 (338)
T ss_pred EcCCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCC---C--------CCCeEecCcCHHHh-C----
Confidence 1111 3346 589999999999999999986 58999999999652 3 46778888877643 1
Q ss_pred chhhccCCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhccc------HHHHhcCcccccCCc
Q 015441 195 SREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANL------YSEIAEGIYSYGVTR 268 (406)
Q Consensus 195 ~~~~i~~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~------~~e~~~ni~py~~~~ 268 (406)
...++||||+|+|++++++|+||+++ ++|+++.|+|+|++||+++ ..+..+ .++++.|+.|...+.
T Consensus 146 -----~~~~IISnasCTTn~Lap~lk~L~~~--fgI~~~~mTTiha~T~~q~-l~d~~~~~d~r~~ra~a~NiIP~~tGa 217 (338)
T PLN02358 146 -----SDLDIVSNASCTTNCLAPLAKVINDR--FGIVEGLMTTVHSITATQK-TVDGPSMKDWRGGRAASFNIIPSSTGA 217 (338)
T ss_pred -----CCCCEEECCCchHHHHHHHHHHHHHh--cCeeEEEEEEEEeecCccc-ccCCCCCccccCccccccccccCCcch
Confidence 13579999999999999999999998 7999999999999999965 455432 146778888886553
Q ss_pred ccchhhhhhhhccccC-CCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCcccc-cc
Q 015441 269 HRHVPEIEQGLTGFAS-SKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRT-HN 346 (406)
Q Consensus 269 h~h~pEi~~~l~~i~~-~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~-~~ 346 (406)
.+ + +.++++ -+.+++.+++|||+++||+.+++++++++++.||++++|+++..+ ++-.++.-.+.|-. .+
T Consensus 218 ak---a----~~kIlP~l~gkl~g~avRVPv~~gs~~dl~v~~~~~~t~eev~~~l~~a~~~-~l~gil~~~~~~~VS~D 289 (338)
T PLN02358 218 AK---A----VGKVLPSLNGKLTGMSFRVPTVDVSVVDLTVRLEKAATYDEIKKAIKEESEG-KLKGILGYTEDDVVSTD 289 (338)
T ss_pred hh---h----hhhccccCCCcEEEEEEEeeEcCeeEEEEEEEECCCCCHHHHHHHHHHHhhc-cccCcccccCCceeeee
Confidence 21 1 222332 122599999999999999999999999999999999999998543 33333321111222 12
Q ss_pred ccCCCc-EEEEEEE--eCcCCeEEEEEEehhhhHhHHHHHHHHHHHH
Q 015441 347 VRGSNY-CLMNVFP--DRIPGRAIIISVIDNLVKGASGQALQNLNIM 390 (406)
Q Consensus 347 v~g~n~-~~v~~~~--~~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~ 390 (406)
-.|+.+ +-+-... .-..+-+-+++--|| -+|=|-+-+..+..|
T Consensus 290 ~~~~~~s~i~d~~~t~~~~~~~vk~~~WyDN-E~gys~r~~dl~~~~ 335 (338)
T PLN02358 290 FVGDNRSSIFDAKAGIALSDKFVKLVSWYDN-EWGYSSRVVDLIVHM 335 (338)
T ss_pred cCCCCcceEEEcccCeEecCCEEEEEEEecC-chhHHHHHHHHHHHH
Confidence 233332 2111100 001233447777899 567777777766655
|
|
| >PLN02237 glyceraldehyde-3-phosphate dehydrogenase B | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.4e-31 Score=267.11 Aligned_cols=294 Identities=11% Similarity=0.111 Sum_probs=217.0
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcC--CCceEEEEeccCcCC-----ccccccccCccc--------------cCCCcc
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANH--PYFGIKLMTADRKAG-----QSIGSVFPHLIS--------------QDLPTM 119 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~h--p~~elv~l~s~~~~G-----~~i~~v~p~l~~--------------~~~~~~ 119 (406)
+|++||||+| .|+|||.++|++... +++|++++++..... .+++++|+.|.+ +.+...
T Consensus 73 ~~~ikVgING-FGRIGR~vlR~~~~~~~~~ievVaINd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~V~ 151 (442)
T PLN02237 73 VAKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIKVV 151 (442)
T ss_pred cceEEEEEEC-CChHHHHHHHHHHHccCCCeEEEEECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEECCEEEEEE
Confidence 4679999999 999999999987644 789999998743322 267777777642 122212
Q ss_pred cccC--cccC--CCCCEEEEcCCCcchHHHHhh-CCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhcccccc
Q 015441 120 VAVK--DADF--SNVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEI 194 (406)
Q Consensus 120 ~~~~--~~~~--~~vDvVF~al~~~~s~~~~~~-l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~ 194 (406)
..-+ +.+| .++|+||+|+|.+.+++.++. +++|+++||+| ++|.++ ++|.++|++|.+..-+
T Consensus 152 ~~~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iS-AP~~d~--------dvptvV~GVN~~~~~~---- 218 (442)
T PLN02237 152 SNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT-APAKGA--------DIPTYVVGVNEDDYDH---- 218 (442)
T ss_pred EcCCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEEC-CCCCCC--------CCceEecccCHHHhCc----
Confidence 1112 3457 589999999999999998875 68999999999 678764 3678888887764311
Q ss_pred chhhccCCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccH-----HHHhcCcccccCCcc
Q 015441 195 SREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLY-----SEIAEGIYSYGVTRH 269 (406)
Q Consensus 195 ~~~~i~~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~-----~e~~~ni~py~~~~h 269 (406)
...+|||||+|+|++++++|+||+++ ++|+++.|+|+|++|+. |+..|..|. +..+.||+|.+.+..
T Consensus 219 -----~~~~IISnaSCTTNcLAPvlkvL~d~--fGI~~g~mTTvHs~T~d-Q~~~D~~h~D~Rr~Raaa~nIIPtsTGAA 290 (442)
T PLN02237 219 -----EVANIVSNASCTTNCLAPFVKVLDEE--FGIVKGTMTTTHSYTGD-QRLLDASHRDLRRARAAALNIVPTSTGAA 290 (442)
T ss_pred -----CCCCEEECCchHHHHHHHHHHHHHHh--cCeeEEEEEEEEeccCC-cccccCCCcccccccccccccccCCcchh
Confidence 12579999999999999999999998 79999999999999998 666776542 356689999988764
Q ss_pred ----cchhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCC-CCCHHHHHHHHHHHcCCCCc---EEecCCCCc
Q 015441 270 ----RHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAP-GVTIEDLYQQLKISYEHEEF---VKLLEKGVV 341 (406)
Q Consensus 270 ----~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~-~~s~eev~~~l~~~y~~~~f---V~v~~~~~~ 341 (406)
+.+||+++ +++..++|||+..|.+.++++++++ +++.|||+++|+++..+ ++ +.+.++
T Consensus 291 kAv~~VlP~L~G----------Kl~g~A~RVPt~nvS~vDLt~~l~k~~~t~eein~~~k~aa~~-~lkgil~y~~~--- 356 (442)
T PLN02237 291 KAVSLVLPQLKG----------KLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAADG-PLKGILAVCDV--- 356 (442)
T ss_pred hhhceecccCCC----------ceeeEEEecccCCceEEEEEEEeCCCCCCHHHHHHHHHHhhcc-ccCCeeeeeCC---
Confidence 46788876 5889999999999999999999998 79999999999998543 32 333322
Q ss_pred ccc-ccccCCCcEEE-----EEEEeCcCCeEEEEEEehhhhHhHHHHHHHHHHHHhCC
Q 015441 342 PRT-HNVRGSNYCLM-----NVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMLGF 393 (406)
Q Consensus 342 P~~-~~v~g~n~~~v-----~~~~~~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~g~ 393 (406)
|-. .+-.|..+--| +... ..+-+-+++--|| -+|=|-+-+-.++.|...
T Consensus 357 plVS~Df~~~~~Ssi~D~~~t~v~--~~~~vKv~aWYDN-EwGys~R~~dl~~~~~~~ 411 (442)
T PLN02237 357 PLVSVDFRCSDVSSTIDASLTMVM--GDDMVKVVAWYDN-EWGYSQRVVDLAHLVAAK 411 (442)
T ss_pred ceeeeeecCCCcceEEEcccCEEe--CCCEEEEEEEeCC-chhHHHHHHHHHHHHHHh
Confidence 221 13334332222 1111 1222347777999 678888888888888764
|
|
| >TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.4e-31 Score=261.86 Aligned_cols=232 Identities=16% Similarity=0.169 Sum_probs=176.8
Q ss_pred EEEEECcccHHHHHHHHHHHcC--CCceEEEEeccCcCC-----ccccccccCccc--------------c-CCCccc--
Q 015441 65 RIGLLGASGYTGAEIVRLLANH--PYFGIKLMTADRKAG-----QSIGSVFPHLIS--------------Q-DLPTMV-- 120 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~h--p~~elv~l~s~~~~G-----~~i~~v~p~l~~--------------~-~~~~~~-- 120 (406)
||||+| .|++||.++|++.+. ++++++++++..+.. .+++++|+.|.+ + .+....
T Consensus 1 ~i~ING-fGRIGr~~~r~~~~~~~~~~~ivaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~~l~i~g~~~i~v~~~~ 79 (327)
T TIGR01534 1 KVGING-FGRIGRLVLRAILEKQGLDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVTADEDKGLVVNGKFVIVVASER 79 (327)
T ss_pred CEEEEc-cChHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHhcccCCCCCCCCcEEecCCceEEECCeEEEEEEecC
Confidence 699999 999999999998766 579999998743211 256666766531 1 121111
Q ss_pred ccCcccCC--CCCEEEEcCCCcchHHHHhh-CCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchh
Q 015441 121 AVKDADFS--NVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISRE 197 (406)
Q Consensus 121 ~~~~~~~~--~vDvVF~al~~~~s~~~~~~-l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~ 197 (406)
+.++.+|. ++|+||+|+|.+.+++.++. +++|+++||+|++ |+++ +|+++|++|.+.. .
T Consensus 80 dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap-~~d~---------~plvV~gVN~~~~-~------- 141 (327)
T TIGR01534 80 DPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAP-SKGD---------APTIVYGVNHDEY-D------- 141 (327)
T ss_pred CcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCC-CCCC---------CCeecCCCCHHHh-C-------
Confidence 23344576 89999999999999999875 6899999999998 7653 5888888887743 1
Q ss_pred hccCCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhccc-----HHHHhcCcccccCCcccch
Q 015441 198 DIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANL-----YSEIAEGIYSYGVTRHRHV 272 (406)
Q Consensus 198 ~i~~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~-----~~e~~~ni~py~~~~h~h~ 272 (406)
...+|||||+|+|++++++|+||++. ++++++.|+|+|++||.++ ..+..+ .++++.|+.|+..+..
T Consensus 142 --~~~~IISn~sCtTn~Lap~lk~L~~~--fgI~~~~~TTiha~t~~q~-lld~~~~d~r~~r~~a~NiIP~~tg~a--- 213 (327)
T TIGR01534 142 --PEERIISNASCTTNCLAPLAKVLDEA--FGIVSGLMTTVHSYTNDQN-LVDGPHKDLRRARAAALNIIPTSTGAA--- 213 (327)
T ss_pred --CCCCEEecCCchHHHHHHHHHHHHHh--cCeeEEEEEEEEeecCccc-cccCCCCCCcCceEeEeeeeccCCChH---
Confidence 13579999999999999999999998 7999999999999999853 333221 1345678888764422
Q ss_pred hhhhhhhccccCCCc--eEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcC
Q 015441 273 PEIEQGLTGFASSKV--TVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYE 328 (406)
Q Consensus 273 pEi~~~l~~i~~~~~--~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~ 328 (406)
.++. +++ +.+ +|+.+++||||++||+.+++++++++++.||++++|+++.+
T Consensus 214 k~~~----kvl-P~L~gkv~~~avRVPv~~gs~~dl~v~~~~~~t~eev~~al~~a~~ 266 (327)
T TIGR01534 214 KAIG----KVL-PELAGKLTGMAIRVPTPNVSLVDLVLNLEKDTTKEEVNAALKEAAE 266 (327)
T ss_pred HHHh----hcc-ccCCCeEEEEEEEecccCeEEEEEEEEECCCCCHHHHHHHHHhhhh
Confidence 2222 222 222 49999999999999999999999999999999999998743
|
The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. |
| >PLN02272 glyceraldehyde-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-30 Score=260.05 Aligned_cols=293 Identities=11% Similarity=0.123 Sum_probs=202.2
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccC-cCC-----ccccccccCccc--------------cCCCccc--
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR-KAG-----QSIGSVFPHLIS--------------QDLPTMV-- 120 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~-~~G-----~~i~~v~p~l~~--------------~~~~~~~-- 120 (406)
|+||+|+| .|.+||.++|.+...++++++++++.. ... .+++++|+.|.+ +.+....
T Consensus 85 ~~kvgInG-FGRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~~ 163 (421)
T PLN02272 85 KTKIGING-FGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKR 163 (421)
T ss_pred ceEEEEEC-cCHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEecC
Confidence 47999999 999999999998766789999998732 111 256777776642 1222111
Q ss_pred ccCcccCC--CCCEEEEcCCCcchHHHHhh-CCCCC--EEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccc
Q 015441 121 AVKDADFS--NVDAVFCCLPHGTTQEIIKG-LPKSL--KIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEIS 195 (406)
Q Consensus 121 ~~~~~~~~--~vDvVF~al~~~~s~~~~~~-l~~G~--~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~ 195 (406)
+.++.+|. ++|+||+|+|.+.+++.++. +++|+ +|||++++ ++|+++|++|.+.. .
T Consensus 164 dp~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~~-------------dvPlvV~gVN~~~l-~----- 224 (421)
T PLN02272 164 DPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSA-------------DAPMFVVGVNEKTY-K----- 224 (421)
T ss_pred CcccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCCC-------------CCCeEEeccCHHHh-C-----
Confidence 22344576 89999999999999998875 57787 88998832 36778888877643 1
Q ss_pred hhhccCCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccH------HHHhcCcccccCCcc
Q 015441 196 REDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLY------SEIAEGIYSYGVTRH 269 (406)
Q Consensus 196 ~~~i~~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~------~e~~~ni~py~~~~h 269 (406)
...+|||||+|+|++++++|+||+++ ++|+++.|+|+|++||. ++..|..++ ++++.|++|...+..
T Consensus 225 ----~~~~IISnaSCTTn~Lap~lk~L~~~--fGI~~g~mTTvha~T~t-Q~llD~~~~~d~r~~R~aa~NIIPt~tGaa 297 (421)
T PLN02272 225 ----PNMNIVSNASCTTNCLAPLAKVVHEE--FGILEGLMTTVHATTAT-QKTVDGPSMKDWRGGRGASQNIIPSSTGAA 297 (421)
T ss_pred ----CCCCeeeCCCcHHHHHHHHHHHHHHh--CCeEEEEEEEEEeccCc-cccccCccccccccCCCcccccccCCCccc
Confidence 12579999999999999999999998 79999999999999997 665664321 355677777654432
Q ss_pred cchhhhhhhhccccCCCc--eEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCcccc-cc
Q 015441 270 RHVPEIEQGLTGFASSKV--TVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRT-HN 346 (406)
Q Consensus 270 ~h~pEi~~~l~~i~~~~~--~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~-~~ 346 (406)
+ ++. +++ +.+ +++.+++||||++||+.+++++++++++.||++++|+++.++ ++-.++.-.+-|-. .+
T Consensus 298 k---av~----kVL-P~L~gkl~gtaVRVPv~~gs~~dltv~lek~~s~eev~~alk~a~~~-~l~gil~y~~~~lVS~D 368 (421)
T PLN02272 298 K---AVG----KVL-PELNGKLTGMAFRVPTPNVSVVDLTCRLEKSASYEDVKAAIKYASEG-PLKGILGYTDEDVVSND 368 (421)
T ss_pred h---hhh----hcc-cccCCcEEEEEEEeccCceEEEEEEEEECCCCCHHHHHHHHHHHhcc-ccccccccccCCEeeee
Confidence 1 222 222 223 499999999999999999999999999999999999998543 44333321111222 13
Q ss_pred ccCCCc-EEEEEEE--eCcCCeEEEEEEehhhhHhHHHHHHHHHHHHhC
Q 015441 347 VRGSNY-CLMNVFP--DRIPGRAIIISVIDNLVKGASGQALQNLNIMLG 392 (406)
Q Consensus 347 v~g~n~-~~v~~~~--~~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~g 392 (406)
..|..+ +-+-... .-..+-+-+++--|| -+|=+-+-+..+..|..
T Consensus 369 f~~~~~ssi~D~~~t~~~~~~~vKv~~WYDN-EwGys~R~~dl~~~~~~ 416 (421)
T PLN02272 369 FVGDSRSSIFDAKAGIGLSASFMKLVSWYDN-EWGYSNRVLDLIEHMAL 416 (421)
T ss_pred cCCCCCcEEEEcccCeEecCCEEEEEEEecC-chhHHHHHHHHHHHHHh
Confidence 334332 1111100 001233457788899 56777777777766643
|
|
| >PF02774 Semialdhyde_dhC: Semialdehyde dehydrogenase, dimerisation domain; InterPro: IPR012280 This domain contains N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-32 Score=248.75 Aligned_cols=156 Identities=37% Similarity=0.473 Sum_probs=130.3
Q ss_pred HHHHHHccCCCcceEEEEEeeccCccCcchhh-----------------cccHHHHhcCcccccCC-cccchhhhhhhhc
Q 015441 219 LVPLIQANLIQYRNIIIDAKSGVSGAGRGAKE-----------------ANLYSEIAEGIYSYGVT-RHRHVPEIEQGLT 280 (406)
Q Consensus 219 L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~-----------------~~~~~e~~~ni~py~~~-~h~h~pEi~~~l~ 280 (406)
|+||+++ ++++++|+|+|+||+||||++|++ ..++.++++|+.||... .|+|+||+++++.
T Consensus 1 L~PL~~~-l~~~~~v~v~t~qgvSGAG~~~~~eL~~q~~~~~~~~~~~~~~~~~~i~~N~~py~~~~~h~h~~e~~~el~ 79 (184)
T PF02774_consen 1 LAPLHKA-LFGLERVIVDTYQGVSGAGRKGVEELAQQTASLLNGKPPSPGLFPSQIAFNLIPYIGGFEHRHEPEIEEELK 79 (184)
T ss_dssp HHHHHHT-HHHECEEEEEEEEEGGGGCHHHHHHHHHHHHHHHCSSTSTCSSTSSHHTTSEBSCSSTBTTTSHHHBHHHHH
T ss_pred CcchhhC-cCCCcEEEEEEeechhhccHhHHHHHHHhHHhhhccCCCCCCccchhhhcceeEccCCcccCchHHHHHHHH
Confidence 7899998 678899999999999999998444 44556888999999988 8999999998875
Q ss_pred c------ccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCC-CCcEEecCCCCccccccccC-CCc
Q 015441 281 G------FASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEH-EEFVKLLEKGVVPRTHNVRG-SNY 352 (406)
Q Consensus 281 ~------i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~-~~fV~v~~~~~~P~~~~v~g-~n~ 352 (406)
. +++....|++|||||||+|||++|+|++++ .+..++.++++.+|.+ ++||++.+++.+|+|++++| +|.
T Consensus 80 ~~~~~~~~l~~~~~v~~t~~~vPv~rG~~~ti~v~~~--~~~~~~~~~~~~~~~~~~~~V~~~~~~~~P~~~~v~g~~n~ 157 (184)
T PF02774_consen 80 MIAETRKILGFPPRVSFTCVRVPVFRGHLATIYVELK--ETPVDVEEIYEAFYKGPEPFVRVDPEGDYPTPKDVVGGTNF 157 (184)
T ss_dssp HHHHHHHHCTETTEEEEEEEEESSSSEEEEEEEEEES--SSHHHHHHHHHHHHTSTTEEEEESSHTHHSSHHHHTTTSSS
T ss_pred hhccccceeeccccccccEEEEeeeeeEceeEEEEec--CCHHHHHHHHHHHhCCCCcEEEEcCCCCccccHhhccCCCe
Confidence 3 333222899999999999999999999996 3456666677777776 89999987678999999999 999
Q ss_pred EEEEEEEeC-cCC-eEEEEEEehhhhH
Q 015441 353 CLMNVFPDR-IPG-RAIIISVIDNLVK 377 (406)
Q Consensus 353 ~~v~~~~~~-~~~-~~~~~~v~DNL~K 377 (406)
|+|||++.+ ..+ .+.+|+++|||+|
T Consensus 158 ~~Vgrvr~d~~~~~~l~~~~~~DNL~K 184 (184)
T PF02774_consen 158 VDVGRVRVDPRDPRGLVVWSVIDNLRK 184 (184)
T ss_dssp EEEEEEEEETTTTTEEEEEEEEETTTT
T ss_pred EEEEEEEECCCCCCEEEEEEEEccccC
Confidence 999977644 344 5999999999998
|
It also contains the yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a dimerisation domain of semialdehyde dehydrogenase.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0046983 protein dimerization activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YS4_B 2CVO_C 2HJS_A 2I3A_A 2NQT_A 2I3G_B 3Q0E_B 1MB4_A 3PZR_A 1MC4_A .... |
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=254.75 Aligned_cols=228 Identities=15% Similarity=0.183 Sum_probs=168.8
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC---------CccccccccC----ccccCCCcccccCcccCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA---------GQSIGSVFPH----LISQDLPTMVAVKDADFSN 129 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~---------G~~i~~v~p~----l~~~~~~~~~~~~~~~~~~ 129 (406)
|+||||+|+ |.+|+.+++++.++|+++++++++.... |..+....|. +.+..+. +....++.+.+
T Consensus 1 ~ikVaI~G~-GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~-V~~~~~el~~~ 78 (341)
T PRK04207 1 MIKVGVNGY-GTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIP-VAGTIEDLLEK 78 (341)
T ss_pred CeEEEEECC-CHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceE-EcCChhHhhcc
Confidence 589999997 9999999999999999999999974321 1110000000 1111121 11111223468
Q ss_pred CCEEEEcCCCcchHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCcEEecC
Q 015441 130 VDAVFCCLPHGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANP 208 (406)
Q Consensus 130 vDvVF~al~~~~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~iVanP 208 (406)
+|+||+|+|.+.+.++++.+ ++|++|||+++.++..+ +++. +|++|.+ ++.+.++|+||
T Consensus 79 vDVVIdaT~~~~~~e~a~~~~~aGk~VI~~~~~~~~~~--------~~~~-v~~vN~~-----------~~~~~~~v~~~ 138 (341)
T PRK04207 79 ADIVVDATPGGVGAKNKELYEKAGVKAIFQGGEKAEVA--------GVSF-NALANYE-----------EALGKDYVRVV 138 (341)
T ss_pred CCEEEECCCchhhHHHHHHHHHCCCEEEEcCCCCCCCC--------CCcE-EeeECHH-----------HhCCCCcEEcc
Confidence 99999999999999999865 78999999999876543 2444 6666655 33334589999
Q ss_pred CChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhcCccccc--CCcccchhhhhhhhccccCCC
Q 015441 209 GCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYG--VTRHRHVPEIEQGLTGFASSK 286 (406)
Q Consensus 209 gC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni~py~--~~~h~h~pEi~~~l~~i~~~~ 286 (406)
||+||+++++|+||+++ ++++++.++|+|++|+- . +. .+...+|+.|+. ...| |-+++... + +.
T Consensus 139 sCtT~~l~~~l~~L~~~--fgI~~~~vTtv~a~td~--~---~~-~r~~~~niip~p~~~~~~-~g~~v~~v----l-p~ 204 (341)
T PRK04207 139 SCNTTGLCRTLCALDRA--FGVKKVRATLVRRAADP--K---EV-KRGPINAIVPDPVTVPSH-HGPDVKTV----L-PD 204 (341)
T ss_pred ChHHHHHHHHHHHHHHh--cCceEEEEEEEEcCCCc--c---hh-hHHHhcCcCCCCCCCCCC-chhHHHhh----C-CC
Confidence 99999999999999987 79999999999998853 1 11 256678898874 2223 23444433 3 56
Q ss_pred ceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHH
Q 015441 287 VTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKIS 326 (406)
Q Consensus 287 ~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~ 326 (406)
++|+.+|+|||+++||+.+++++|+++++.||++++|+++
T Consensus 205 l~i~~~avrVPv~~gh~~~v~v~l~~~~t~eev~~~l~~~ 244 (341)
T PRK04207 205 LDITTMAVKVPTTLMHMHSVNVELKKPVTKEEVLEALENT 244 (341)
T ss_pred CceEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHhC
Confidence 6799999999999999999999999999999999999987
|
|
| >PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-28 Score=242.98 Aligned_cols=294 Identities=11% Similarity=0.064 Sum_probs=201.7
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEecc-CcCC-----ccccccccCccc---------------cCCCccc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD-RKAG-----QSIGSVFPHLIS---------------QDLPTMV 120 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~-~~~G-----~~i~~v~p~l~~---------------~~~~~~~ 120 (406)
|++||||+| .|++||.++|.+.+.+++|++++++. .+.. .+++++|+.|.+ +.+..+.
T Consensus 1 m~~kv~ING-fGRIGR~v~R~~~~~~~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~~~~~~l~i~g~~~i~~~~ 79 (342)
T PTZ00353 1 LPITVGING-FGPVGKAVLFASLTDPLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRVVGEQIVLNGTQKIRVSA 79 (342)
T ss_pred CCeEEEEEC-CChHHHHHHHHHHhcCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEEEcCCEEecCCCeEEEEEe
Confidence 447999999 99999999999877789999999862 2221 367777777731 1222222
Q ss_pred c--cCcccCC--CCCEEEEcCCCcchHHHHh-hC---CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhcccc
Q 015441 121 A--VKDADFS--NVDAVFCCLPHGTTQEIIK-GL---PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLT 192 (406)
Q Consensus 121 ~--~~~~~~~--~vDvVF~al~~~~s~~~~~-~l---~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglp 192 (406)
. .++.+|. ++|+||+|+|.+.+.+-+. .+ ++++.|+|.|. +.|.++|++|.+.. .
T Consensus 80 ~~dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisaps~--------------d~p~vV~gVN~~~~-~-- 142 (342)
T PTZ00353 80 KHDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQSA--------------DAPTVMAGSNDERL-S-- 142 (342)
T ss_pred cCCcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCCCC--------------CCCeEEecCChHHc-C--
Confidence 2 2234576 9999999999986544332 23 34567777652 25777777776632 1
Q ss_pred ccchhhccCCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEe---eccCccCc-chhhccc--HHHHhcCcccccC
Q 015441 193 EISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAK---SGVSGAGR-GAKEANL--YSEIAEGIYSYGV 266 (406)
Q Consensus 193 E~~~~~i~~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~---~gvSGaG~-~~~~~~~--~~e~~~ni~py~~ 266 (406)
...++||||+|+|++++++++||+++ |+|+++.|+|+ |..|++|. .++++.+ .+....||.|...
T Consensus 143 -------~~~~IISnaSCTTn~LapvlkvL~~~--fGI~~g~mTTvHs~q~~~~~d~~~~~~~d~rr~RaA~~nIiPtst 213 (342)
T PTZ00353 143 -------ASLPVCCAGAPIAVALAPVIRALHEV--YGVEECSYTAIHGMQPQEPIAARSKNSQDWRQTRVAIDAIAPYRD 213 (342)
T ss_pred -------CCCCEEECCCHHHHHHHHHHHHHHHh--cCeeEEEeeeeeecceeecCCCcccccccccccchHHhCCcccCC
Confidence 12579999999999999999999998 79999999999 88888876 4433322 3456788999877
Q ss_pred Cccc----chhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCcc
Q 015441 267 TRHR----HVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVP 342 (406)
Q Consensus 267 ~~h~----h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P 342 (406)
+.++ .+|++.+ +++.+++|||+++||+.+++++++++++.||++++|+++.++ ++-.++.-.+-|
T Consensus 214 gaakav~kVlP~L~g----------kl~g~avRVPt~~vs~vdltv~~~k~~t~eein~~l~~aa~~-~l~gil~~~~~~ 282 (342)
T PTZ00353 214 NGAETVCKLLPHLVG----------RISGSAFQVPVKKGCAIDMLVRTKQPVSKEVVDSALAEAASD-RLNGVLCISKRD 282 (342)
T ss_pred cchhhhhhhccccCC----------cEEEEEEEccccCeEEEEEEEEECCCCCHHHHHHHHHHHhhc-ccCCeEEecCCC
Confidence 7653 3444433 489999999999999999999999999999999999998543 322222101112
Q ss_pred cc-ccccCCCcEEEEEEEeC---cCCeEEEEEEehhhhHhHHHHHHHHHHHHhCCC
Q 015441 343 RT-HNVRGSNYCLMNVFPDR---IPGRAIIISVIDNLVKGASGQALQNLNIMLGFP 394 (406)
Q Consensus 343 ~~-~~v~g~n~~~v~~~~~~---~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~g~~ 394 (406)
-. .+-.|+..+-+-..... ..+-+-+++--|| -+|=|-+-+..+..|..+.
T Consensus 283 ~VS~Df~~~~~si~D~~~t~~~~~~~~vKv~~WYDN-E~Gys~r~~dl~~~~~~~~ 337 (342)
T PTZ00353 283 MISVDCIPNGKLCYDATSSSSSREGEVHKMVLWFDV-ECYYAARLLSLVKQLHQIH 337 (342)
T ss_pred eeeeEeCCCCCeEEEcccCeEEeCCCEEEEEEEecC-chHHHHHHHHHHHHHHhcc
Confidence 22 13334433222110000 1223457788999 6788888888888876544
|
|
| >PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=235.82 Aligned_cols=296 Identities=15% Similarity=0.157 Sum_probs=209.0
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcC----CCceEEEEeccCc-CC--------ccccccccCccc--------------
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANH----PYFGIKLMTADRK-AG--------QSIGSVFPHLIS-------------- 113 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~h----p~~elv~l~s~~~-~G--------~~i~~v~p~l~~-------------- 113 (406)
.+..||+|+| +|+|||.++|+|.+. +.+++++++.+.. .+ .+++++|+.|.+
T Consensus 125 ~~~~~V~InG-FGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~~d~~~~ayLLkyDSvhG~f~~~v~~~~~~~~liin 203 (477)
T PRK08289 125 IEPRDVVLYG-FGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSEGDLEKRASLLRRDSVHGPFNGTITVDEENNAIIAN 203 (477)
T ss_pred CCCceEEEEC-CCHHHHHHHHHHHhccCCCCCeEEEEEecCCCCCCCHHHHHHHhhhhcCCCCCCCceEeecCCCEEEEC
Confidence 3457999999 999999999998765 6899999964211 11 267888887753
Q ss_pred -cCCCcccccCcc--cCC--CCC--EEEEcCCCcchHHHHhh-CC-CCC-EEEEcCCcccCCCccchhhhcCCCCCCccc
Q 015441 114 -QDLPTMVAVKDA--DFS--NVD--AVFCCLPHGTTQEIIKG-LP-KSL-KIVDLSADFRLRDVSEYEEWYGQPHIAPDL 183 (406)
Q Consensus 114 -~~~~~~~~~~~~--~~~--~vD--vVF~al~~~~s~~~~~~-l~-~G~-~VIDlSa~fRl~~~~~~~~~y~~~~~~Pev 183 (406)
..+..+..-++. +|. ++| +|+.|+|.....+-+.. ++ +|+ +|| +|++. ++ +.|.++|++
T Consensus 204 g~~I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkVi-iSAP~--k~--------d~p~iV~GV 272 (477)
T PRK08289 204 GNYIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVL-LTAPG--KG--------DIKNIVHGV 272 (477)
T ss_pred CEEEEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEE-ECCCC--CC--------CCCeEEccc
Confidence 111112222222 353 889 99999999988886654 66 674 677 78873 33 356677766
Q ss_pred hhhhhccccccchhhcc-CCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccH-----HHH
Q 015441 184 QKEAVYGLTEISREDIK-NARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLY-----SEI 257 (406)
Q Consensus 184 n~~~vyglpE~~~~~i~-~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~-----~e~ 257 (406)
|.+. +. ..+|||||+|+|+|++++|+||++. |+|++..|+|+|++|+ |+.++|++|. +++
T Consensus 273 N~~~-----------~~~~~~IISnASCTTN~LaPvlKvL~d~--fGI~~g~mTTvHa~T~-dQ~lvD~~hkd~RrgRaa 338 (477)
T PRK08289 273 NHSD-----------ITDEDKIVSAASCTTNAITPVLKAVNDK--YGIVNGHVETVHSYTN-DQNLIDNYHKGDRRGRSA 338 (477)
T ss_pred CHHH-----------hCCCCCEEECCccHHHHHHHHHHHHHHh--cCeeEEEEEEEecccC-ChHHhhhhhhcCccccee
Confidence 6553 32 3579999999999999999999998 7999999999999999 8999998653 245
Q ss_pred hcCcccccCCcc----cchhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcE
Q 015441 258 AEGIYSYGVTRH----RHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFV 333 (406)
Q Consensus 258 ~~ni~py~~~~h----~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV 333 (406)
+.|+.|...+.. +.+||+++ +++.+++||||++|++.+++++++++++.|+|+++|+++....++-
T Consensus 339 a~NIIptsTGAAkAv~kVLP~L~G----------Kltg~avRVPt~nvS~vdLtv~l~k~vt~eevn~~lk~aa~~~~L~ 408 (477)
T PRK08289 339 PLNMVITETGAAKAVAKALPELAG----------KLTGNAIRVPTPNVSMAILNLNLEKETSREELNEYLRQMSLHSPLQ 408 (477)
T ss_pred eeeeEecCCChhhhhhhcccccCC----------cEEEEEEEeccccEEEEEEEEEECCCCCHHHHHHHHHHHhhcCCcc
Confidence 678888776653 34565544 5899999999999999999999999999999999999986333433
Q ss_pred EecCCCCccccc--cccCCCcEEEE---EEEeCcCCeEEEEEEehhhhHhHHHHHHHHHHHHhCCC
Q 015441 334 KLLEKGVVPRTH--NVRGSNYCLMN---VFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMLGFP 394 (406)
Q Consensus 334 ~v~~~~~~P~~~--~v~g~n~~~v~---~~~~~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~g~~ 394 (406)
.++.=.+-|... +-.|+.+-.|- ...- ..+.+.+++--|| -.|=+-|-+..++.|.+..
T Consensus 409 gil~yt~~~~lVSsDfig~~~SsI~D~~~T~v-~g~~vkv~~WYDN-E~GYS~rvvdl~~~~~~~~ 472 (477)
T PRK08289 409 NQIDYTDSTEVVSSDFVGSRHAGVVDSQATIV-NGNRAVLYVWYDN-EFGYSCQVVRVMEQMAGVR 472 (477)
T ss_pred ceeeecccCCeeeeeecCCCchhheehhccEE-cCCEEEEEEEecC-chhHHHHHHHHHHHHHhcc
Confidence 332211112111 22333322110 0000 1345667777999 6888999999998886653
|
|
| >COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=219.75 Aligned_cols=284 Identities=17% Similarity=0.198 Sum_probs=200.6
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCC-CceEEEEeccCcCC-----ccccccccCccc-------------cCCCcccccC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHP-YFGIKLMTADRKAG-----QSIGSVFPHLIS-------------QDLPTMVAVK 123 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp-~~elv~l~s~~~~G-----~~i~~v~p~l~~-------------~~~~~~~~~~ 123 (406)
|+||||+| +|.|||.++|.+...+ ++|++++++..... .+++++|+.|.+ ..++.....+
T Consensus 1 ~ikV~ING-fGrIGR~v~ra~~~~~~dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I~v~~~~~ 79 (335)
T COG0057 1 MIKVAING-FGRIGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGIKVLAERD 79 (335)
T ss_pred CcEEEEec-CcHHHHHHHHHHHhCCCCeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccccCCeEEECCceEEEEecCC
Confidence 58999999 9999999999999888 79999999743322 245666666543 2232222233
Q ss_pred cc--cC--CCCCEEEEcCCCcchHHHHhh-CCC-CC-EEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccch
Q 015441 124 DA--DF--SNVDAVFCCLPHGTTQEIIKG-LPK-SL-KIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISR 196 (406)
Q Consensus 124 ~~--~~--~~vDvVF~al~~~~s~~~~~~-l~~-G~-~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~ 196 (406)
++ +| .++|+|+.|+|.+.+++.+++ +++ |+ +|| +|++- ++ + + ++.+|| +|.
T Consensus 80 p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~-isap~--~~--------~----~----~~vv~g---vn~ 137 (335)
T COG0057 80 PANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVL-ISAPG--KD--------D----V----ATVVYG---VNH 137 (335)
T ss_pred hHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEE-EcCCC--CC--------C----c----cEEEEe---ccc
Confidence 22 23 268999999999999998875 666 45 555 77753 11 0 1 256788 677
Q ss_pred hhcc-CCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccH-----HHHhcCcccccCCcc-
Q 015441 197 EDIK-NARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLY-----SEIAEGIYSYGVTRH- 269 (406)
Q Consensus 197 ~~i~-~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~-----~e~~~ni~py~~~~h- 269 (406)
+.+. ++++|+|.+|+|||+++.+++|.++ |+|+++.++|.|++++. +.-.|.+|. +.++.|+.|.+.+..
T Consensus 138 ~~~~~~~~iVsnaSCTTNcLap~~kvl~d~--fGI~~g~mTtVh~~T~d-Q~~~dgph~~~rr~raa~~niIp~sTgaAk 214 (335)
T COG0057 138 NYYDAGHTIVSNASCTTNCLAPVAKVLNDA--FGIEKGLMTTVHAYTND-QKLVDGPHKDLRRARAAALNIIPTSTGAAK 214 (335)
T ss_pred cccCCCCcEEEEccchhhhhHHHHHHHHHh--cCeeEEEEEEEEcccCC-CccccCcccchhhhccccCCCCcCCCcchh
Confidence 7776 6899999999999999999999998 89999999999999998 556777653 455678888766542
Q ss_pred ---cchhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCccccc-
Q 015441 270 ---RHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTH- 345 (406)
Q Consensus 270 ---~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~~- 345 (406)
..+||+.+ ++..+++|||+..+|+.+++++++++++.|||+++|+++... .|=.+.+=.+.|...
T Consensus 215 av~~VlP~L~g----------Kl~g~A~RVPt~~vs~~dl~v~l~k~~t~eeIn~alk~as~~-~lkg~~~y~e~~~Vs~ 283 (335)
T COG0057 215 AVGLVLPELKG----------KLTGMAIRVPTPNVSVVDLTVELEKEVTVEEINAALKAASEI-GLKGILGYTEDPLVSS 283 (335)
T ss_pred hhhhhCcccCC----------ceeeEEEEecCCCcEEEEEEEEeCCCCCHHHHHHHHHHhhcc-cccceeeeEecccccc
Confidence 35677765 589999999999999999999999999999999999998543 322222111123221
Q ss_pred cccCCCcEEEEEEEeC----cC-CeEEEEEEehhhhHhHHHHHHHH
Q 015441 346 NVRGSNYCLMNVFPDR----IP-GRAIIISVIDNLVKGASGQALQN 386 (406)
Q Consensus 346 ~v~g~n~~~v~~~~~~----~~-~~~~~~~v~DNL~KGAAgqAVQ~ 386 (406)
+-.|.. +.+++-.. .. +.+-+++..|| =.|-+-+-|..
T Consensus 284 D~~~~~--~ssI~d~~~t~~~~~~~vk~~~wydN-E~gys~r~vD~ 326 (335)
T COG0057 284 DFNGDP--HSSIFDASATIVLGGNLVKLVAWYDN-EWGYSNRVVDL 326 (335)
T ss_pred ccCCCc--ceeEEEccceEeccCcEEEEEEEEec-cccchHHHHHH
Confidence 222222 22233221 12 23668889999 45555555555
|
|
| >PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.6e-25 Score=218.62 Aligned_cols=294 Identities=13% Similarity=0.126 Sum_probs=209.1
Q ss_pred CccEEEEECcccHHHHHHHHHHHcC----CCceEEEEecc-CcCC-----ccccccccCccc------------------
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANH----PYFGIKLMTAD-RKAG-----QSIGSVFPHLIS------------------ 113 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~h----p~~elv~l~s~-~~~G-----~~i~~v~p~l~~------------------ 113 (406)
|++||||+| +|+|||.++|.+.+. +++|++++++. .... .+++++|+.|.+
T Consensus 2 m~ikVgING-FGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~ 80 (361)
T PTZ00434 2 APIKVGING-FGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKTDDVLV 80 (361)
T ss_pred CceEEEEEC-cChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcCCceeecccccccccCCEEE
Confidence 457999999 999999999997753 68999999973 2222 367777776531
Q ss_pred ---cCCCcc-cccCcc--cCC--CCCEEEEcCCCcchHHHHhh-CCCCC-EEEEcCCcccCCCccchhhhcCCCCCCccc
Q 015441 114 ---QDLPTM-VAVKDA--DFS--NVDAVFCCLPHGTTQEIIKG-LPKSL-KIVDLSADFRLRDVSEYEEWYGQPHIAPDL 183 (406)
Q Consensus 114 ---~~~~~~-~~~~~~--~~~--~vDvVF~al~~~~s~~~~~~-l~~G~-~VIDlSa~fRl~~~~~~~~~y~~~~~~Pev 183 (406)
+.+..+ .+.++. .|. ++|+|+.|+|...+++-+.. +++|+ +|| +|++. +++ .
T Consensus 81 ing~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkVi-iSAP~--~d~--------~------- 142 (361)
T PTZ00434 81 VNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVV-ISAPA--SGG--------A------- 142 (361)
T ss_pred ECCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEE-ECCCC--CCC--------C-------
Confidence 112212 222232 353 89999999999999887754 67774 677 77763 221 1
Q ss_pred hhhhhccccccchhhccC--CcEEecCCChHHHHHHHHHHH-HHccCCCcceEEEEEeeccCccCcchhhcccH------
Q 015441 184 QKEAVYGLTEISREDIKN--ARLVANPGCYPTSIQLPLVPL-IQANLIQYRNIIIDAKSGVSGAGRGAKEANLY------ 254 (406)
Q Consensus 184 n~~~vyglpE~~~~~i~~--~~iVanPgC~tta~~l~L~PL-~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~------ 254 (406)
...+|| +|++++.. .++|||.+|+|+|+++.++.| +++ |+|++..++|+|++++. |+..|..++
T Consensus 143 -~t~V~G---VN~~~y~~~~~~IiSnASCTTNcLAP~~kvL~~~~--fGI~~g~mTTVHayT~~-Q~~~D~~~~kD~Rr~ 215 (361)
T PTZ00434 143 -KTIVMG---VNQHEYSPTEHHVVSNASCTTNCLAPIVHVLTKEG--FGIETGLMTTIHSYTAT-QKTVDGVSVKDWRGG 215 (361)
T ss_pred -ceEEEc---CChHHcCcccCcEEECCChHHHhhHHHHHHhhcCC--cceEEEEEEEEecccCC-cccccCcCccccccc
Confidence 146888 78888865 579999999999999999999 677 89999999999999998 666776532
Q ss_pred HHHhcCcccccCCcc----cchhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCC
Q 015441 255 SEIAEGIYSYGVTRH----RHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHE 330 (406)
Q Consensus 255 ~e~~~ni~py~~~~h----~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~ 330 (406)
+..+.||+|.+.+.. +.+||+++ +++..++|||+..|.+.+++++++++++.|||+++++++.++
T Consensus 216 Raaa~nIIPtsTGAAkAv~~VlP~L~G----------Kl~G~a~RVPt~nvS~vDLt~~l~k~~t~eein~a~k~aa~~- 284 (361)
T PTZ00434 216 RAAAVNIIPSTTGAAKAVGMVIPSTKG----------KLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDAAIKRASQT- 284 (361)
T ss_pred ccccccCccCCcchhhhhceeccccCC----------ceeeEEEecccCcEeEEEEEEEeCCCCCHHHHHHHHHHhhhc-
Confidence 346789999988864 46788876 589999999999999999999999999999999999998543
Q ss_pred CcEEecCCCCcccc-ccccCCCc-EEEE----EEEe--CcCCeEEEEEEehhhhHhHHHHHHHHHHHHhCC
Q 015441 331 EFVKLLEKGVVPRT-HNVRGSNY-CLMN----VFPD--RIPGRAIIISVIDNLVKGASGQALQNLNIMLGF 393 (406)
Q Consensus 331 ~fV~v~~~~~~P~~-~~v~g~n~-~~v~----~~~~--~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~g~ 393 (406)
++-.++.=.+-|-. .+-.|+.+ +-+- ...+ ...+-+-+++--|| -+|=|-+-+..+..|...
T Consensus 285 ~lkgIl~y~~~plVS~Df~g~~~Ssi~D~~~t~v~~~~~~~~~vKv~~WYDN-EwGys~Rl~dl~~~~~~~ 354 (361)
T PTZ00434 285 YMKGILGFTDDELVSADFINDNRSSIYDSKATLQNNLPGERRFFKIVSWYDN-EWGYSHRVVDLVRYMAAK 354 (361)
T ss_pred cccCcccccCCCccccccCCCCCCeEEEhhhCeEeccCCCCCEEEEEEEecC-chHHHHHHHHHHHHHHhc
Confidence 44333321111221 13334332 1111 1111 01133558888999 677777777777776543
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-26 Score=195.82 Aligned_cols=118 Identities=41% Similarity=0.777 Sum_probs=98.5
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
||+|+|||||+|++|+++|.+||.++++.+.+++. +|+++.+.+|.+.+.....+++.+.+.+.++|+||+|+|++.++
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~~ 80 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGASK 80 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHHH
Confidence 79999999999999999999999999999988777 99999999885543222223444455678999999999999999
Q ss_pred HHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccC
Q 015441 144 EIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKN 201 (406)
Q Consensus 144 ~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~ 201 (406)
++++++ ++|++|||+|++||+++ +++||+||+|++++++
T Consensus 81 ~~~~~~~~~g~~ViD~s~~~R~~~-------------------~~~~~~pevn~~~i~~ 120 (121)
T PF01118_consen 81 ELAPKLLKAGIKVIDLSGDFRLDD-------------------DVPYGLPEVNREQIKK 120 (121)
T ss_dssp HHHHHHHHTTSEEEESSSTTTTST-------------------TSEEE-HHHHHHHHHC
T ss_pred HHHHHHhhCCcEEEeCCHHHhCCC-------------------CCCEEeCCcCHHHHcc
Confidence 999886 89999999999999987 3569999999998865
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.9e-20 Score=181.39 Aligned_cols=225 Identities=14% Similarity=0.134 Sum_probs=160.2
Q ss_pred EEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-------CccccccccCcc------ccCCCcccccCcccCCCCCE
Q 015441 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-------GQSIGSVFPHLI------SQDLPTMVAVKDADFSNVDA 132 (406)
Q Consensus 66 VaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-------G~~i~~v~p~l~------~~~~~~~~~~~~~~~~~vDv 132 (406)
|||+| .|.+|+.++|.+.++|+++++++++.... -..++..|+... ...+.....+ ++.+.++|+
T Consensus 1 VaInG-~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~-eeLl~~vDi 78 (333)
T TIGR01546 1 VGVNG-YGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTL-EDLLEKVDI 78 (333)
T ss_pred CEEEC-CcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCH-HHHhhcCCE
Confidence 69999 99999999999988899999999973321 012444332111 0011111111 122368999
Q ss_pred EEEcCCCcchHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCcEEecCCCh
Q 015441 133 VFCCLPHGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCY 211 (406)
Q Consensus 133 VF~al~~~~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~iVanPgC~ 211 (406)
|+.|+|.+...+.++.+ +.|.+.|=.|+.. ++ + ++ ..++|| +|.+++.+..+|+|.+|+
T Consensus 79 Vve~Tp~~~~~~na~~~~~~GakaVl~~~p~--~~---------~----~~--~tfv~g---vN~~~~~~~~~vs~aSCt 138 (333)
T TIGR01546 79 VVDATPGGIGAKNKPLYEKAGVKAIFQGGEK--AE---------V----AD--VSFVAQ---ANYEAALGKDYVRVVSCN 138 (333)
T ss_pred EEECCCCCCChhhHHHHHhCCcCEEEECCCC--CC---------C----CC--ceEEee---eCHHHcCcCceEEecCch
Confidence 99999999988877765 5565433377763 11 1 11 135666 677777766699999999
Q ss_pred HHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhcCcccc--cCCcccchhhhhhhhccccCCCceE
Q 015441 212 PTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSY--GVTRHRHVPEIEQGLTGFASSKVTV 289 (406)
Q Consensus 212 tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni~py--~~~~h~h~pEi~~~l~~i~~~~~~v 289 (406)
||++++.+++|++. |+++++.++|.+. ++. ++ | +.+...+||.|. .+.+|. -+.+...+ +.+++
T Consensus 139 Tn~Lap~~~~L~~~--fGI~~~~~Ttvh~-t~d-q~--d--~rrgr~~~IiP~~~t~ps~~-a~av~~Vl-----P~L~i 204 (333)
T TIGR01546 139 TTGLVRTLNAINDY--SKVDKVRAVMVRR-AAD-PN--D--VKKGPINAIVPDPVTVPSHH-GPDVQTVI-----PNLNI 204 (333)
T ss_pred HhhHHHHHHHHHHh--cCeEEEEEEEEee-cCC-hh--h--hccCchhceEeCCCCCCCch-HHHHHHcC-----CCCCc
Confidence 99999999999998 7999999999995 444 32 2 223346889987 444553 45554433 34558
Q ss_pred EEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHH
Q 015441 290 SFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKIS 326 (406)
Q Consensus 290 ~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~ 326 (406)
...++|||+..+|+.+++++++++++.|||+++|+++
T Consensus 205 ~g~AvrVPt~~vs~~dl~v~l~~~~t~eeV~~~l~~~ 241 (333)
T TIGR01546 205 ETMAFVVPTTLMHVHSIMVELKKPVTKDDIIDILENT 241 (333)
T ss_pred cEEEEEeCCCCcEEEEEEEEECCCCCHHHHHHHHHhC
Confidence 9999999999999999999999999999999999986
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.2e-18 Score=166.52 Aligned_cols=219 Identities=16% Similarity=0.291 Sum_probs=150.0
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc--CCccccccccCccccCCCcccc-cCcccCCCCCEEEEcCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK--AGQSIGSVFPHLISQDLPTMVA-VKDADFSNVDAVFCCLP 138 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~--~G~~i~~v~p~l~~~~~~~~~~-~~~~~~~~vDvVF~al~ 138 (406)
+++||||+| +|.+|+.++..|.+.|.++++++++... .|.....-+. +.. ....++. ++..+|.++|+||+|+|
T Consensus 3 ~klrVAIIG-tG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~G-i~~-~~~~ie~LL~~~~~~dIDiVf~AT~ 79 (302)
T PRK08300 3 SKLKVAIIG-SGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLG-VAT-SAEGIDGLLAMPEFDDIDIVFDATS 79 (302)
T ss_pred CCCeEEEEc-CcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcC-CCc-ccCCHHHHHhCcCCCCCCEEEECCC
Confidence 358999999 9999999888888889999999997543 2322221111 000 0011111 22335678999999999
Q ss_pred CcchHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCcEEecCCChHHHHHH
Q 015441 139 HGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQL 217 (406)
Q Consensus 139 ~~~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~iVanPgC~tta~~l 217 (406)
+....++++.+ ++|+.|||++++|+ .|+++||+|.+...+ ..+.++|+||||.++.+++
T Consensus 80 a~~H~e~a~~a~eaGk~VID~sPA~~------------~PlvVP~VN~~~~~~--------~~~~~iia~p~~ati~~v~ 139 (302)
T PRK08300 80 AGAHVRHAAKLREAGIRAIDLTPAAI------------GPYCVPAVNLDEHLD--------APNVNMVTCGGQATIPIVA 139 (302)
T ss_pred HHHHHHHHHHHHHcCCeEEECCcccc------------CCcccCcCCHHHHhc--------ccCCCEEECccHHHHHHHH
Confidence 99999999875 88999999999983 589999999987632 2346899999999999999
Q ss_pred HHHHHHHccCCCcceEEEEEeeccC-ccC-cchhhcccHHHHhcCcccccCCcccchhhhhhhhccccCCCceEEEEEEE
Q 015441 218 PLVPLIQANLIQYRNIIIDAKSGVS-GAG-RGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHL 295 (406)
Q Consensus 218 ~L~PL~~~~l~~i~~i~v~t~~gvS-GaG-~~~~~~~~~~e~~~ni~py~~~~h~h~pEi~~~l~~i~~~~~~v~~t~~r 295 (406)
+|+|+.+. +..+|+ +|+++.| |.| |..+|+ +..++...+.-++-.. + .+.-|...|.-
T Consensus 140 Al~~v~~~---~~~eIv-at~~s~s~g~gtr~nidE-~~~~t~~~~~~~~g~~-~--------------~kai~~~npa~ 199 (302)
T PRK08300 140 AVSRVAPV---HYAEIV-ASIASKSAGPGTRANIDE-FTETTSRAIEKVGGAA-R--------------GKAIIILNPAE 199 (302)
T ss_pred HhcccCcC---ceeeee-eeehhhccCCcccccHHH-HHHHHHHHHHHhcCcc-c--------------ceEEEEecCCC
Confidence 99996542 556776 9999999 999 888888 3344443333221110 0 00113334433
Q ss_pred eeecceeEEEEEEEeCCCCCHHHHHHHHHH
Q 015441 296 MPMIRGMQSTIYVEMAPGVTIEDLYQQLKI 325 (406)
Q Consensus 296 VPv~rG~~~ti~v~l~~~~s~eev~~~l~~ 325 (406)
=|+. +--|+|...+++.+.++|++...+
T Consensus 200 p~~~--m~~tv~~~~~~~~~~~~i~~~~~~ 227 (302)
T PRK08300 200 PPLI--MRDTVYCLVDEDADQDAIEASVHA 227 (302)
T ss_pred CCcc--ceeeEEEeeCCCCCHHHHHHHHHH
Confidence 3331 344777777776888888887665
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.8e-14 Score=120.27 Aligned_cols=114 Identities=40% Similarity=0.760 Sum_probs=84.9
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEec-cCcCCccccccccCccccCCCcccccCcccC--CCCCEEEEcCCCcc
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTA-DRKAGQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCLPHGT 141 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s-~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~al~~~~ 141 (406)
||+|+|++|++|+.+++.|.++|+++++++.+ +++.|+.+.+.++.+..... ...+.+++ .++|+||+|+|...
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~DvV~~~~~~~~ 77 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVV---LELEPEDFEELAVDIVFLALPHGV 77 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccc---cccccCChhhcCCCEEEEcCCcHH
Confidence 68999999999999999999999999999954 45677877777665432111 11222233 48999999999998
Q ss_pred hHHHHh----hCCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhcc
Q 015441 142 TQEIIK----GLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIK 200 (406)
Q Consensus 142 s~~~~~----~l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~ 200 (406)
..+.++ .+..|+.|||+|+++|+++ ...|++||+|+++++
T Consensus 78 ~~~~~~~~~~~~~~g~~viD~s~~~~~~~-------------------~~~~~~~~~n~~~~~ 121 (122)
T smart00859 78 SKEIAPLLPKAAEAGVKVIDLSSAFRMDD-------------------DVPYGLPEVNPEAIK 121 (122)
T ss_pred HHHHHHHHHhhhcCCCEEEECCccccCCC-------------------CceEEcCccCHHHhc
Confidence 888543 2467999999999999976 234777777776543
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.4e-13 Score=130.66 Aligned_cols=215 Identities=14% Similarity=0.223 Sum_probs=139.3
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc--CCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK--AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~--~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
++||||+| +|.+|+.++..+.+.+.++++++.+... .+.....-+. ... ....++.+-. -.++|+||+|+|+.
T Consensus 1 klrVAIIG-~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~G-i~~-~~~~~e~ll~--~~dIDaV~iaTp~~ 75 (285)
T TIGR03215 1 KVKVAIIG-SGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELG-VKT-SAEGVDGLLA--NPDIDIVFDATSAK 75 (285)
T ss_pred CcEEEEEe-CcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCC-CCE-EECCHHHHhc--CCCCCEEEECCCcH
Confidence 37999999 6999999977777788999999987433 2211111110 000 0000111100 13689999999999
Q ss_pred chHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCcEEecCCChHHHHHHHH
Q 015441 141 TTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPL 219 (406)
Q Consensus 141 ~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~iVanPgC~tta~~l~L 219 (406)
...+++..+ ++|+.|||+++.++ .|+.+|++|.+..-+ ..+.++|++|+|.++.++.+|
T Consensus 76 ~H~e~a~~al~aGk~VIdekPa~~------------~plvvp~VN~~~~~~--------~~~~~iv~c~~~atip~~~al 135 (285)
T TIGR03215 76 AHARHARLLAELGKIVIDLTPAAI------------GPYVVPAVNLDEHLD--------APNVNMVTCGGQATIPIVAAI 135 (285)
T ss_pred HHHHHHHHHHHcCCEEEECCcccc------------CCccCCCcCHHHHhc--------CcCCCEEEcCcHHHHHHHHHH
Confidence 888888764 88999999999872 589999999765532 234689999999999999999
Q ss_pred HHHHHccCCCcceEEEEEeeccCc-c-CcchhhcccHHHHhcCcccccCCcccchhhhhhhhccccCCCceEEEEEEEee
Q 015441 220 VPLIQANLIQYRNIIIDAKSGVSG-A-GRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMP 297 (406)
Q Consensus 220 ~PL~~~~l~~i~~i~v~t~~gvSG-a-G~~~~~~~~~~e~~~ni~py~~~~h~h~pEi~~~l~~i~~~~~~v~~t~~rVP 297 (406)
+++++.+ + ..+++|+++.|+ . ||.++|+ +..++...+...+-. .+ .+.-+...|.-=|
T Consensus 136 ~r~~d~~-~---~~iv~ti~s~S~g~g~r~~ide-l~~~t~~~~~~~gG~-~~--------------~k~~~~~~~a~p~ 195 (285)
T TIGR03215 136 SRVAPVH-Y---AEIVASIASRSAGPGTRANIDE-FTETTSRALEQVGGA-KK--------------GKAIIILNPAEPP 195 (285)
T ss_pred HHhhccc-c---EEEEEEEEeeccCCCchhHHHH-HHHHHHHHHHHcCCc-cc--------------ceEEEEecCCCCC
Confidence 9999874 2 256788999995 8 5888897 344544333322111 00 0001333333333
Q ss_pred ecceeEEEEEEEeCCCCCHHHHHHHHHH
Q 015441 298 MIRGMQSTIYVEMAPGVTIEDLYQQLKI 325 (406)
Q Consensus 298 v~rG~~~ti~v~l~~~~s~eev~~~l~~ 325 (406)
+. +--|+|...+ +.+.++|++...+
T Consensus 196 ~~--~~~~~~~~~~-~~~~~~~~~~~~~ 220 (285)
T TIGR03215 196 LM--MRDTIYCLVE-DPDEDAIEASVEE 220 (285)
T ss_pred cc--ceeeEEEecC-CCCHHHHHHHHHH
Confidence 31 2346666554 4788888876665
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-11 Score=109.39 Aligned_cols=125 Identities=19% Similarity=0.332 Sum_probs=87.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccC-cCC-----ccccccccCccc-------------cCCCcccccCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR-KAG-----QSIGSVFPHLIS-------------QDLPTMVAVKD 124 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~-~~G-----~~i~~v~p~l~~-------------~~~~~~~~~~~ 124 (406)
+||||+| .|.|||.++|.+...|++|++++++.. +.. .+++++|..|.. ..+..+...++
T Consensus 1 ikVgING-fGRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~~~v~~~~~~l~v~G~~I~~~~~~dp 79 (151)
T PF00044_consen 1 IKVGING-FGRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKYDSVHGRFPGDVEVDDDGLIVNGKKIKVTEERDP 79 (151)
T ss_dssp EEEEEES-TSHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHEETTTESGSSHEEEETTEEEETTEEEEEEHTSSG
T ss_pred CEEEEEC-CCcccHHHHHhhcccceEEEEEEecccccchhhhhhhhccccccceecccccccceeEeecccccchhhhhh
Confidence 6899999 999999999999999999999999765 222 256777766631 22222233333
Q ss_pred c--cC--CCCCEEEEcCCCcchHHHHhh-CCCCC-EEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhh
Q 015441 125 A--DF--SNVDAVFCCLPHGTTQEIIKG-LPKSL-KIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISRED 198 (406)
Q Consensus 125 ~--~~--~~vDvVF~al~~~~s~~~~~~-l~~G~-~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~ 198 (406)
. +| .++|+|+.|+|.+.+++.++. +++|+ +|| +|++. +++ . -+..+|| +|.+.
T Consensus 80 ~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkVi-isap~--~~~-----------~----~~t~V~G---vN~~~ 138 (151)
T PF00044_consen 80 EEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVI-ISAPS--KDD-----------A----DPTFVMG---VNHDD 138 (151)
T ss_dssp GGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEE-ESSS---SSS-----------S----SEEE-TT---TSGGG
T ss_pred cccccccccccEEEeccccceeccccccccccccccee-ecccc--ccc-----------c----CCeEEee---ccHHH
Confidence 3 34 489999999999999888765 56775 677 78864 221 0 1256788 78888
Q ss_pred ccCC-cEEecCCC
Q 015441 199 IKNA-RLVANPGC 210 (406)
Q Consensus 199 i~~~-~iVanPgC 210 (406)
+... ++|||.+|
T Consensus 139 ~~~~~~iIS~aSC 151 (151)
T PF00044_consen 139 YDPEHHIISNASC 151 (151)
T ss_dssp GTTTTSEEEE--H
T ss_pred hCCCCCEEEccCC
Confidence 8765 99999999
|
The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O .... |
| >smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.3e-09 Score=95.61 Aligned_cols=124 Identities=23% Similarity=0.398 Sum_probs=84.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-----ccccccccCccc-------------cCCCcccccCcc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-----QSIGSVFPHLIS-------------QDLPTMVAVKDA 125 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-----~~i~~v~p~l~~-------------~~~~~~~~~~~~ 125 (406)
+||+|+|. |.+|+.+++.+.++++++++++.+..+.. .+++++|+.|.. ..+..+...++.
T Consensus 1 ikv~I~G~-GriGr~v~~~~~~~~~~~lvai~d~~~~~~~a~ll~~Ds~hg~~~~~v~~~~~~l~i~g~~i~~~~~~~p~ 79 (149)
T smart00846 1 IKVGINGF-GRIGRLVLRALLERPDIEVVAINDLTDPETLAHLLKYDSVHGRFPGEVEVDEDGLIVNGKKIKVLAERDPA 79 (149)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCEEEEeecCCCHHHHHHHhcccCCCCCCCCcEEEeCCEEEECCEEEEEEecCChH
Confidence 58999995 99999999999988999999998743222 245667776642 111111111221
Q ss_pred --cC--CCCCEEEEcCCCcchHHHHhh-CCCCC-EEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhc
Q 015441 126 --DF--SNVDAVFCCLPHGTTQEIIKG-LPKSL-KIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDI 199 (406)
Q Consensus 126 --~~--~~vDvVF~al~~~~s~~~~~~-l~~G~-~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i 199 (406)
+| .++|+|+.|+|...+++-++. +++|+ +|| +|++. +++ . ...+|| +|.+++
T Consensus 80 ~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkVi-isap~--~~~---------~-------~t~V~G---vN~~~~ 137 (149)
T smart00846 80 NLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVI-ISAPA--KDA---------D-------KTFVYG---VNHDEY 137 (149)
T ss_pred HCcccccCCeEEEeccccccchHHHHHHHHcCCCEEE-eCCCC--CCC---------C-------ceEEEe---echHHc
Confidence 24 489999999999888886654 56775 566 78863 221 0 145777 788888
Q ss_pred cC-CcEEecCCC
Q 015441 200 KN-ARLVANPGC 210 (406)
Q Consensus 200 ~~-~~iVanPgC 210 (406)
.. .++|||.+|
T Consensus 138 ~~~~~iiS~aSC 149 (149)
T smart00846 138 DPEDHIVSNASC 149 (149)
T ss_pred CCCCCEEEcCCC
Confidence 65 459999999
|
GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold. |
| >PF02800 Gp_dh_C: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; InterPro: IPR020829 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.1e-08 Score=91.99 Aligned_cols=109 Identities=13% Similarity=0.093 Sum_probs=82.4
Q ss_pred HHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccH-----HHHhcCcccccCCc----ccchhhhhhhhccccCC
Q 015441 215 IQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLY-----SEIAEGIYSYGVTR----HRHVPEIEQGLTGFASS 285 (406)
Q Consensus 215 ~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~-----~e~~~ni~py~~~~----h~h~pEi~~~l~~i~~~ 285 (406)
+++.++.|++. |+|++..++|+|+++.. |+.+|..+. +..+.|+.|...+. .+.+||+..
T Consensus 1 Lap~~k~l~~~--fgI~~~~~Ttih~~t~~-Q~~~D~~~~d~rrgr~a~~niip~~t~aa~av~~VlP~L~g-------- 69 (157)
T PF02800_consen 1 LAPVLKVLDDN--FGIEKGRMTTIHAYTDP-QKLVDGPHKDWRRGRAAAQNIIPTSTGAAKAVGKVLPELNG-------- 69 (157)
T ss_dssp HHHHHHHHHHH--HEEEEEEEEEEEESSTT-SBSSSS--SSTGTTSBTTTSSEEEEESHHHHHHHHSGGGTT--------
T ss_pred Ccchhhhhhhh--cCEEEEEEEEEeccCCc-cceeeeccccccccccccccccccccccchhhhhhhhhccC--------
Confidence 46789999998 79999999999999988 556665431 12346777765443 234566543
Q ss_pred CceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCC--CCcEEec
Q 015441 286 KVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEH--EEFVKLL 336 (406)
Q Consensus 286 ~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~--~~fV~v~ 336 (406)
++...++|||+..||+.+++++++++++.|||+++|+++..+ ..++.+.
T Consensus 70 --ki~g~a~rVPt~~~s~~dl~~~l~k~~t~eeV~~~~~~aa~~~~~gil~~~ 120 (157)
T PF02800_consen 70 --KITGMAVRVPTPNVSLHDLTVELEKPVTKEEVNEALKQAARGPLKGILGYT 120 (157)
T ss_dssp --TEEEEEEEESSSSEEEEEEEEEESSSS-HHHHHHHHHHHHHTTTTTTEEEE
T ss_pred --cceeeEEeeeecccCceEEEEecccchhhhhhhhhhhhhhHhhhhhhheec
Confidence 689999999999999999999999999999999999998632 3455554
|
The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the C-terminal domain which is a mixed alpha/antiparallel beta fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1DSS_R 1IHY_C 1CRW_R 1IHX_B 1SZJ_R 3HJA_D 2YYY_B 1OBF_O 3PYM_A 2VYN_D .... |
| >KOG0657 consensus Glyceraldehyde 3-phosphate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.1e-07 Score=89.28 Aligned_cols=164 Identities=14% Similarity=0.146 Sum_probs=120.9
Q ss_pred CCCCEEEEcCCCcchHHHHhh-CCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccC-CcEE
Q 015441 128 SNVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKN-ARLV 205 (406)
Q Consensus 128 ~~vDvVF~al~~~~s~~~~~~-l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~-~~iV 205 (406)
.++|++...++...+.+.+.. ++.|.+.+=.|+.- .| .| .++.| +|++++.. ..+|
T Consensus 73 ~g~~~v~e~tg~f~t~e~~~~~~~~gakkviisaps--~d---------ap--------mfv~g---Vn~~~y~~~~~ii 130 (285)
T KOG0657|consen 73 KGADIVVESTGVFTTMEKPGKHFQGGAKKVIISAPS--AD---------AP--------MFVMG---VNGEKYDNSLDII 130 (285)
T ss_pred ccceeEeeccccccccccccccccccceEEEecccc--CC---------CC--------ccccc---cccccccccccee
Confidence 378999999998888887764 56565322133321 11 23 23445 56666653 4589
Q ss_pred ecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccH------HHHhcCcccccCCccc----chhhh
Q 015441 206 ANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLY------SEIAEGIYSYGVTRHR----HVPEI 275 (406)
Q Consensus 206 anPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~------~e~~~ni~py~~~~h~----h~pEi 275 (406)
||.+|++.++++..+-++++ |+|....++|.++++.. ++-+|.+.. +....||+|-+.++++ .+||+
T Consensus 131 SnascttnclaPlaKVi~d~--fgI~EgLMtTvha~tat-Qktvdgps~k~wr~g~~a~qNIiPASTgAakAVgKvipeL 207 (285)
T KOG0657|consen 131 SNASCTTNCLAPLAKVIHDN--FGIMEGLMTTVHAITAT-QKTVDGPSGKLWRDGRRALQNIIPASTGAAKAVGKVIPEL 207 (285)
T ss_pred echhhhhccccchhheeccc--cccccccccceeeeccc-cccccCcccccccccchhhhccccccccHHHHHHHHhHHh
Confidence 99999999888888888887 78888889999999988 445665432 2445799998777653 56777
Q ss_pred hhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHc
Q 015441 276 EQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISY 327 (406)
Q Consensus 276 ~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y 327 (406)
.+ +++.++.|||+. ....+++++++++..-|+++++.+.+.
T Consensus 208 ng----------KLtGMAf~Vpt~-vsVvdl~~~~~k~a~~ddikkvvk~~~ 248 (285)
T KOG0657|consen 208 NG----------KLTGMAFRVPTP-VSVVDLTCHLEKPAKYDDIKKVVKLAS 248 (285)
T ss_pred hC----------ccccceecCCcc-eEeeeeecccccccchHHHHHHHHHhh
Confidence 65 467788999999 888899999999999999999999984
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.7e-06 Score=74.64 Aligned_cols=91 Identities=18% Similarity=0.296 Sum_probs=61.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc---CCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK---AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~---~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
|||+|+|++|..|+.+++.+.++|++++++..+++. .|+.+.+.-... ....+...++ ++.+..+|+++.++-+.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~-~~~~~v~~~l-~~~~~~~DVvIDfT~p~ 78 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG-PLGVPVTDDL-EELLEEADVVIDFTNPD 78 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS-T-SSBEBS-H-HHHTTH-SEEEEES-HH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC-CcccccchhH-HHhcccCCEEEEcCChH
Confidence 689999999999999999999999999999987665 566555432111 1122222222 22345699999999777
Q ss_pred chHHHHhhC-CCCCEEE
Q 015441 141 TTQEIIKGL-PKSLKIV 156 (406)
Q Consensus 141 ~s~~~~~~l-~~G~~VI 156 (406)
...+.++.+ +.|+.+|
T Consensus 79 ~~~~~~~~~~~~g~~~V 95 (124)
T PF01113_consen 79 AVYDNLEYALKHGVPLV 95 (124)
T ss_dssp HHHHHHHHHHHHT-EEE
T ss_pred HhHHHHHHHHhCCCCEE
Confidence 777777764 6687665
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.1e-05 Score=76.31 Aligned_cols=87 Identities=15% Similarity=0.179 Sum_probs=59.3
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
|+||+|+|++|.+|+.+++.+.++|+++++++.++..... ... ..+ ++....++ ++.+.++|+|+.|+++...
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~--~~~-~~~---~i~~~~dl-~~ll~~~DvVid~t~p~~~ 73 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPL--VGQ-GAL---GVAITDDL-EAVLADADVLIDFTTPEAT 73 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc--ccc-CCC---CccccCCH-HHhccCCCEEEECCCHHHH
Confidence 4799999999999999999999899999999987543211 100 011 11111121 1123478999988887777
Q ss_pred HHHHhh-CCCCCEEE
Q 015441 143 QEIIKG-LPKSLKIV 156 (406)
Q Consensus 143 ~~~~~~-l~~G~~VI 156 (406)
.+.+.. +++|+.||
T Consensus 74 ~~~~~~al~~G~~vv 88 (257)
T PRK00048 74 LENLEFALEHGKPLV 88 (257)
T ss_pred HHHHHHHHHcCCCEE
Confidence 777765 58898766
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.92 E-value=2.2e-05 Score=78.39 Aligned_cols=87 Identities=16% Similarity=0.286 Sum_probs=61.1
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
++||+|+| +|.+|+.+++.|.++|++|++++.+++..++ +....+.+ . ..+. .+...++|+|+.|+|+..-
T Consensus 3 kIRVgIVG-~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~-~~~~~~v~---~---~~d~-~e~l~~iDVViIctPs~th 73 (324)
T TIGR01921 3 KIRAAIVG-YGNLGRSVEKAIQQQPDMELVGVFSRRGAET-LDTETPVY---A---VADD-EKHLDDVDVLILCMGSATD 73 (324)
T ss_pred CcEEEEEe-ecHHHHHHHHHHHhCCCcEEEEEEcCCcHHH-HhhcCCcc---c---cCCH-HHhccCCCEEEEcCCCccC
Confidence 58999999 8999999999999999999999988764221 11101101 0 1111 1123579999999998766
Q ss_pred HHHH-hhCCCCCEEEEc
Q 015441 143 QEII-KGLPKSLKIVDL 158 (406)
Q Consensus 143 ~~~~-~~l~~G~~VIDl 158 (406)
.+.+ +.+++|+.|||-
T Consensus 74 ~~~~~~~L~aG~NVV~s 90 (324)
T TIGR01921 74 IPEQAPYFAQFANTVDS 90 (324)
T ss_pred HHHHHHHHHcCCCEEEC
Confidence 6655 456899999975
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=97.83 E-value=3.9e-05 Score=74.82 Aligned_cols=95 Identities=13% Similarity=0.154 Sum_probs=63.0
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc---CCccccccccCccccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK---AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~---~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
|+||+|+|++|..|+.+++.+.++|+++++++.++.. .++........ .....+...+++. ...++|+|+.|+++
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~-~~~gv~~~~d~~~-l~~~~DvVIdfT~p 78 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGI-GKVGVPVTDDLEA-VETDPDVLIDFTTP 78 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCc-CcCCceeeCCHHH-hcCCCCEEEECCCh
Confidence 4799999999999999999999999999999987432 23332221110 0011111111111 11468999999999
Q ss_pred cchHHHHhh-CCCCCEEEEcC
Q 015441 140 GTTQEIIKG-LPKSLKIVDLS 159 (406)
Q Consensus 140 ~~s~~~~~~-l~~G~~VIDlS 159 (406)
....+.+.. +++|+.||--+
T Consensus 79 ~~~~~~~~~al~~g~~vVigt 99 (266)
T TIGR00036 79 EGVLNHLKFALEHGVRLVVGT 99 (266)
T ss_pred HHHHHHHHHHHHCCCCEEEEC
Confidence 888888875 58888776433
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=7.5e-05 Score=72.73 Aligned_cols=91 Identities=16% Similarity=0.323 Sum_probs=59.8
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
|+||+|+|+ |.+|+.+++.|.++|.++++.+..+........... +.....+.++++. -.++|+|+.|+++..-
T Consensus 1 m~rVgIiG~-G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~----~~~~~~~~d~~~l-~~~~DvVve~t~~~~~ 74 (265)
T PRK13303 1 MMKVAMIGF-GAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRAL----GEAVRVVSSVDAL-PQRPDLVVECAGHAAL 74 (265)
T ss_pred CcEEEEECC-CHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhh----ccCCeeeCCHHHh-ccCCCEEEECCCHHHH
Confidence 479999995 999999999999999999998884332211111110 0011112222111 1468999999999877
Q ss_pred HHHHhh-CCCCCEEEEcC
Q 015441 143 QEIIKG-LPKSLKIVDLS 159 (406)
Q Consensus 143 ~~~~~~-l~~G~~VIDlS 159 (406)
.+++.. +++|+.|+-.|
T Consensus 75 ~e~~~~aL~aGk~Vvi~s 92 (265)
T PRK13303 75 KEHVVPILKAGIDCAVIS 92 (265)
T ss_pred HHHHHHHHHcCCCEEEeC
Confidence 777765 58898777544
|
|
| >COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00019 Score=66.67 Aligned_cols=132 Identities=17% Similarity=0.319 Sum_probs=84.3
Q ss_pred CccEEEEECcccHHHHHHHHHHHcC-CCceEEEEec--cCcCCc----ccc--ccccCccccCCCcccccCcccCCCCCE
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANH-PYFGIKLMTA--DRKAGQ----SIG--SVFPHLISQDLPTMVAVKDADFSNVDA 132 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~h-p~~elv~l~s--~~~~G~----~i~--~v~p~l~~~~~~~~~~~~~~~~~~vDv 132 (406)
.+.||+|+| +|.+|..|+--++.| .+.|...+.. ..+.|. ++. ..|..+ + .-+.-.+|.++|+
T Consensus 3 sk~kvaiig-sgni~tdlm~k~lr~g~~le~~~mvgidp~sdglaraarlgv~tt~egv---~----~ll~~p~~~di~l 74 (310)
T COG4569 3 SKRKVAIIG-SGNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGLARAARLGVATTHEGV---I----GLLNMPEFADIDL 74 (310)
T ss_pred CcceEEEEc-cCcccHHHHHHHHhcCCcccceeEEccCCCccHHHHHHhcCCcchhhHH---H----HHHhCCCCCCcce
Confidence 457999999 999999998877776 6678777664 333331 111 111000 0 0011234578899
Q ss_pred EEEcCCCcchHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCcEEecCCCh
Q 015441 133 VFCCLPHGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCY 211 (406)
Q Consensus 133 VF~al~~~~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~iVanPgC~ 211 (406)
||.++..+.-.+.++++ ++|++.|||..+- --|.++|-+|.+.-.+. .+-+.|.+.|-.
T Consensus 75 vfdatsa~~h~~~a~~~ae~gi~~idltpaa------------igp~vvp~~n~~eh~~a--------~nvnmvtcggqa 134 (310)
T COG4569 75 VFDATSAGAHVKNAAALAEAGIRLIDLTPAA------------IGPYVVPVVNLEEHVDA--------LNVNMVTCGGQA 134 (310)
T ss_pred EEeccccchhhcchHhHHhcCCceeecchhc------------cCCeeccccchHHhcCC--------CCcceEeecCcc
Confidence 99999988888888776 7899999998753 13677787777665442 234577777665
Q ss_pred HHHHHHHHHH
Q 015441 212 PTSIQLPLVP 221 (406)
Q Consensus 212 tta~~l~L~P 221 (406)
|.-+..++-.
T Consensus 135 tipiv~avsr 144 (310)
T COG4569 135 TIPIVAAVSR 144 (310)
T ss_pred cchhhhhhhh
Confidence 5444444433
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00028 Score=68.22 Aligned_cols=97 Identities=14% Similarity=0.182 Sum_probs=63.6
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC---CccccccccCccccCCCcccccCcccCCCCCEEEEcCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA---GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLP 138 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~---G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~ 138 (406)
+|+||+|+||+|..|+++++++.+.|++++++..++... |+-..+.- .+.....+...++ .....++|+++..+-
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~-g~~~~gv~v~~~~-~~~~~~~DV~IDFT~ 78 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELA-GLGLLGVPVTDDL-LLVKADADVLIDFTT 78 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhc-cccccCceeecch-hhcccCCCEEEECCC
Confidence 478999999999999999999999999999998875432 22112110 0000111111111 112357899999999
Q ss_pred CcchHHHHhhC-CCCC-EEEEcCC
Q 015441 139 HGTTQEIIKGL-PKSL-KIVDLSA 160 (406)
Q Consensus 139 ~~~s~~~~~~l-~~G~-~VIDlSa 160 (406)
+..+.+.++.+ +.|. .||-..+
T Consensus 79 P~~~~~~l~~~~~~~~~lVIGTTG 102 (266)
T COG0289 79 PEATLENLEFALEHGKPLVIGTTG 102 (266)
T ss_pred chhhHHHHHHHHHcCCCeEEECCC
Confidence 88888888764 6665 5775444
|
|
| >KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00011 Score=67.19 Aligned_cols=77 Identities=16% Similarity=0.229 Sum_probs=48.0
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccC--cccCCCCCEEEEcCCCc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVK--DADFSNVDAVFCCLPHG 140 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~--~~~~~~vDvVF~al~~~ 140 (406)
++.+.|+||||.+|+.|++.+.+.|.+.-+.+..||..- -...+..+..... ++..++ ..++.+.|+.|||+++.
T Consensus 18 ~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~--d~at~k~v~q~~v-Df~Kl~~~a~~~qg~dV~FcaLgTT 94 (238)
T KOG4039|consen 18 NMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELP--DPATDKVVAQVEV-DFSKLSQLATNEQGPDVLFCALGTT 94 (238)
T ss_pred ccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCC--CccccceeeeEEe-chHHHHHHHhhhcCCceEEEeeccc
Confidence 357999999999999999999999998766655555210 0011111111011 112221 23467999999999876
Q ss_pred ch
Q 015441 141 TT 142 (406)
Q Consensus 141 ~s 142 (406)
..
T Consensus 95 Rg 96 (238)
T KOG4039|consen 95 RG 96 (238)
T ss_pred cc
Confidence 44
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00017 Score=65.00 Aligned_cols=91 Identities=21% Similarity=0.274 Sum_probs=53.5
Q ss_pred EEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccc--cCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLIS--QDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 66 VaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~--~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
|+|+||||++|+.|++.|.+.+ .++++++.+.. +... .+.+.. .++.....+ ...+.++|+||+|.++...
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R~~~---~~~~-~~~~~~~~~d~~d~~~~-~~al~~~d~vi~~~~~~~~~ 74 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALVRSPS---KAED-SPGVEIIQGDLFDPDSV-KAALKGADAVIHAAGPPPKD 74 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGG---GHHH-CTTEEEEESCTTCHHHH-HHHHTTSSEEEECCHSTTTH
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEecCch---hccc-ccccccceeeehhhhhh-hhhhhhcchhhhhhhhhccc
Confidence 7899999999999999999776 78888874322 1121 111111 111111111 1234689999999985333
Q ss_pred ----HHHHhhC-CCCC-EEEEcCCcc
Q 015441 143 ----QEIIKGL-PKSL-KIVDLSADF 162 (406)
Q Consensus 143 ----~~~~~~l-~~G~-~VIDlSa~f 162 (406)
+.+.+++ ..|+ ++|-+|+..
T Consensus 75 ~~~~~~~~~a~~~~~~~~~v~~s~~~ 100 (183)
T PF13460_consen 75 VDAAKNIIEAAKKAGVKRVVYLSSAG 100 (183)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEETT
T ss_pred ccccccccccccccccccceeeeccc
Confidence 2233333 3454 566566654
|
... |
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00079 Score=65.83 Aligned_cols=90 Identities=20% Similarity=0.270 Sum_probs=59.4
Q ss_pred ccEEEEECcccHHHHHHHHHHHc-CCCceEEEEeccCcCC-ccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLAN-HPYFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~-hp~~elv~l~s~~~~G-~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
++||+|+| .|.+|+.+++.|.. .+.++++.+.++...- +.+...+ .. ...+.++ ++.+.++|+|+.|+|+.
T Consensus 6 ~irIGIIG-~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~---g~--~~~~~~~-eell~~~D~Vvi~tp~~ 78 (271)
T PRK13302 6 ELRVAIAG-LGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGL---RR--PPPVVPL-DQLATHADIVVEAAPAS 78 (271)
T ss_pred eeEEEEEC-ccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhc---CC--CcccCCH-HHHhcCCCEEEECCCcH
Confidence 47999999 99999999999987 5889999888754211 1111111 00 0001111 11235789999999998
Q ss_pred chHHHHhh-CCCCCEEEEcC
Q 015441 141 TTQEIIKG-LPKSLKIVDLS 159 (406)
Q Consensus 141 ~s~~~~~~-l~~G~~VIDlS 159 (406)
.-.++... +++|+.||..|
T Consensus 79 ~h~e~~~~aL~aGk~Vi~~s 98 (271)
T PRK13302 79 VLRAIVEPVLAAGKKAIVLS 98 (271)
T ss_pred HHHHHHHHHHHcCCcEEEec
Confidence 77787765 58888777554
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0011 Score=65.68 Aligned_cols=32 Identities=22% Similarity=0.477 Sum_probs=26.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEec
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA 96 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s 96 (406)
|||.|.||||++|+.|++.|.++. .+++++..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g-~~V~~l~R 32 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEG-YQVRCLVR 32 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CeEEEEEc
Confidence 389999999999999999998764 57777763
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.001 Score=64.67 Aligned_cols=93 Identities=15% Similarity=0.136 Sum_probs=61.4
Q ss_pred CccEEEEECcccHHHHHHHHHHHc--CCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLAN--HPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~--hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
|++||+|+| .|.+|+.+.+.|.. .+.++++++.++.. .+ ... +.. ..+.+.++++....+.|+|+.|.++
T Consensus 1 ~~~rvgiIG-~GaIG~~va~~l~~~~~~~~~l~~V~~~~~-~~-~~~----~~~-~~~~~~~l~~ll~~~~DlVVE~A~~ 72 (267)
T PRK13301 1 MTHRIAFIG-LGAIASDVAAGLLADAAQPCQLAALTRNAA-DL-PPA----LAG-RVALLDGLPGLLAWRPDLVVEAAGQ 72 (267)
T ss_pred CceEEEEEC-ccHHHHHHHHHHhcCCCCceEEEEEecCCH-HH-HHH----hhc-cCcccCCHHHHhhcCCCEEEECCCH
Confidence 568999999 99999999998875 35689999876542 11 110 111 1122222222112578999999999
Q ss_pred cchHHHHhh-CCCCCEEEEcC-Ccc
Q 015441 140 GTTQEIIKG-LPKSLKIVDLS-ADF 162 (406)
Q Consensus 140 ~~s~~~~~~-l~~G~~VIDlS-a~f 162 (406)
..-+++.+. |++|+-++=+| ++|
T Consensus 73 ~av~e~~~~iL~~g~dlvv~SvGAL 97 (267)
T PRK13301 73 QAIAEHAEGCLTAGLDMIICSAGAL 97 (267)
T ss_pred HHHHHHHHHHHhcCCCEEEEChhHh
Confidence 999999986 58787444355 555
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00087 Score=65.26 Aligned_cols=90 Identities=16% Similarity=0.286 Sum_probs=58.5
Q ss_pred ccEEEEECcccHHHHHHHHHHHcC-CCceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANH-PYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~h-p~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
|+||+|+| .|.+|+.+++.|.+. +.++++.+.++... .+.+.. .+ ....+.+. ++.+.++|+|+.|+++.
T Consensus 1 mmrIgIIG-~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~---~~---~~~~~~~~-~ell~~~DvVvi~a~~~ 72 (265)
T PRK13304 1 MLKIGIVG-CGAIASLITKAILSGRINAELYAFYDRNLEKAENLAS---KT---GAKACLSI-DELVEDVDLVVECASVN 72 (265)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHH---hc---CCeeECCH-HHHhcCCCEEEEcCChH
Confidence 46999999 799999999998865 37888888875421 011111 01 01111111 11226799999999988
Q ss_pred chHHHHhh-CCCCCEEEEcCC
Q 015441 141 TTQEIIKG-LPKSLKIVDLSA 160 (406)
Q Consensus 141 ~s~~~~~~-l~~G~~VIDlSa 160 (406)
.-.++++. +++|+.||..|.
T Consensus 73 ~~~~~~~~al~~Gk~Vvv~s~ 93 (265)
T PRK13304 73 AVEEVVPKSLENGKDVIIMSV 93 (265)
T ss_pred HHHHHHHHHHHcCCCEEEEch
Confidence 77787765 577877776553
|
|
| >PLN02775 Probable dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0034 Score=61.78 Aligned_cols=94 Identities=11% Similarity=0.121 Sum_probs=63.7
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCcccc-ccccCccccCCCcc--cccCcccC-----CCCC-
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIG-SVFPHLISQDLPTM--VAVKDADF-----SNVD- 131 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~-~v~p~l~~~~~~~~--~~~~~~~~-----~~vD- 131 (406)
.+.+||+|+||+|..|+++++.+.+ ++++|++..+....|..+. ++. +.+++.. .++ .+.+ ...|
T Consensus 9 ~~~i~V~V~Ga~G~MG~~~~~av~~-~~~~Lv~~~~~~~~~~~~~~~~~----g~~v~~~~~~dl-~~~l~~~~~~~~~~ 82 (286)
T PLN02775 9 GSAIPIMVNGCTGKMGHAVAEAAVS-AGLQLVPVSFTGPAGVGVTVEVC----GVEVRLVGPSER-EAVLSSVKAEYPNL 82 (286)
T ss_pred CCCCeEEEECCCChHHHHHHHHHhc-CCCEEEEEeccccccccccceec----cceeeeecCccH-HHHHHHhhccCCCE
Confidence 3458999999999999999999999 9999999888776665544 221 1122211 111 0111 2478
Q ss_pred EEEEcCCCcchHHHHhhC-CCCCE-EEEcCC
Q 015441 132 AVFCCLPHGTTQEIIKGL-PKSLK-IVDLSA 160 (406)
Q Consensus 132 vVF~al~~~~s~~~~~~l-~~G~~-VIDlSa 160 (406)
+++..+-+....+.++.+ +.|+. ||-.++
T Consensus 83 VvIDFT~P~a~~~~~~~~~~~g~~~VvGTTG 113 (286)
T PLN02775 83 IVVDYTLPDAVNDNAELYCKNGLPFVMGTTG 113 (286)
T ss_pred EEEECCChHHHHHHHHHHHHCCCCEEEECCC
Confidence 889888888888888764 67765 554444
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.00089 Score=56.28 Aligned_cols=85 Identities=22% Similarity=0.457 Sum_probs=56.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcC-CCceEEEEeccCcCC-ccccccccCccccCCCcccccCcccC--CCCCEEEEcCCC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANH-PYFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCLPH 139 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~h-p~~elv~l~s~~~~G-~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~al~~ 139 (406)
+||+|+| .|.+|+..++.+... |.++++++.++.... +.....+ .++.+.++ ++.+ .++|+|+.|+|+
T Consensus 1 i~v~iiG-~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~------~~~~~~~~-~~ll~~~~~D~V~I~tp~ 72 (120)
T PF01408_consen 1 IRVGIIG-AGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKY------GIPVYTDL-EELLADEDVDAVIIATPP 72 (120)
T ss_dssp EEEEEES-TSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT------TSEEESSH-HHHHHHTTESEEEEESSG
T ss_pred CEEEEEC-CcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHh------cccchhHH-HHHHHhhcCCEEEEecCC
Confidence 5899999 699999999877765 899999998765321 1111100 11112211 1112 378999999998
Q ss_pred cchHHHHhh-CCCCCEEE
Q 015441 140 GTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 140 ~~s~~~~~~-l~~G~~VI 156 (406)
..=.+++.. +++|+.|+
T Consensus 73 ~~h~~~~~~~l~~g~~v~ 90 (120)
T PF01408_consen 73 SSHAEIAKKALEAGKHVL 90 (120)
T ss_dssp GGHHHHHHHHHHTTSEEE
T ss_pred cchHHHHHHHHHcCCEEE
Confidence 777777765 58888766
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0015 Score=66.86 Aligned_cols=96 Identities=21% Similarity=0.200 Sum_probs=62.0
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-ccccc-cccCccc--cCCCcccccCcccCCCCCEEEEcCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-QSIGS-VFPHLIS--QDLPTMVAVKDADFSNVDAVFCCLP 138 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-~~i~~-v~p~l~~--~~~~~~~~~~~~~~~~vDvVF~al~ 138 (406)
|+||.|+|| |.||+.+++.|+++.+.++. +++|+... .++.. ..+++.. .|......+ .+.+.+.|+|+.|+|
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~-iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al-~~li~~~d~VIn~~p 77 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVT-IADRSKEKCARIAELIGGKVEALQVDAADVDAL-VALIKDFDLVINAAP 77 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCCceEE-EEeCCHHHHHHHHhhccccceeEEecccChHHH-HHHHhcCCEEEEeCC
Confidence 578999997 99999999999987776664 44443211 11211 1111111 011111111 123467799999999
Q ss_pred CcchHHHHhhC-CCCCEEEEcCCc
Q 015441 139 HGTTQEIIKGL-PKSLKIVDLSAD 161 (406)
Q Consensus 139 ~~~s~~~~~~l-~~G~~VIDlSa~ 161 (406)
......+++++ ++|+.++|.|-.
T Consensus 78 ~~~~~~i~ka~i~~gv~yvDts~~ 101 (389)
T COG1748 78 PFVDLTILKACIKTGVDYVDTSYY 101 (389)
T ss_pred chhhHHHHHHHHHhCCCEEEcccC
Confidence 99999999875 889999998864
|
|
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0036 Score=62.96 Aligned_cols=86 Identities=21% Similarity=0.429 Sum_probs=57.1
Q ss_pred CccEEEEECcccHHHHH-HHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccC--CCCCEEEEcCC
Q 015441 62 KQVRIGLLGASGYTGAE-IVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCLP 138 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~e-LlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~al~ 138 (406)
+++||||+| +|.+|+. .++.+...|.++++++.++... +....++ + ...+.++ ++.+ .++|+|+.|+|
T Consensus 3 ~~irvgiiG-~G~i~~~~~~~~~~~~~~~~l~av~d~~~~--~~~~~~~---~--~~~~~~~-~ell~~~~vD~V~I~tp 73 (346)
T PRK11579 3 DKIRVGLIG-YGYASKTFHAPLIAGTPGLELAAVSSSDAT--KVKADWP---T--VTVVSEP-QHLFNDPNIDLIVIPTP 73 (346)
T ss_pred CcceEEEEC-CCHHHHHHHHHHHhhCCCCEEEEEECCCHH--HHHhhCC---C--CceeCCH-HHHhcCCCCCEEEEcCC
Confidence 358999999 8999985 6788888899999999875421 1111111 1 0111111 1112 37899999999
Q ss_pred CcchHHHHhh-CCCCCEEE
Q 015441 139 HGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 139 ~~~s~~~~~~-l~~G~~VI 156 (406)
+..=.+++.+ +++|+.|+
T Consensus 74 ~~~H~~~~~~al~aGkhVl 92 (346)
T PRK11579 74 NDTHFPLAKAALEAGKHVV 92 (346)
T ss_pred cHHHHHHHHHHHHCCCeEE
Confidence 8776777654 68898876
|
|
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0037 Score=63.15 Aligned_cols=94 Identities=16% Similarity=0.264 Sum_probs=55.5
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCC---------CceEEEEeccCc-----CCccccccccCccc-cCCCccc----cc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHP---------YFGIKLMTADRK-----AGQSIGSVFPHLIS-QDLPTMV----AV 122 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp---------~~elv~l~s~~~-----~G~~i~~v~p~l~~-~~~~~~~----~~ 122 (406)
|++||+|+| .|.||+.++++|.+++ .++++++++++. .|............ ..+..+. ..
T Consensus 1 m~i~V~IiG-~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (341)
T PRK06270 1 MEMKIALIG-FGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEI 79 (341)
T ss_pred CeEEEEEEC-CCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccC
Confidence 578999999 8999999999998653 689999987431 22211110000000 0000000 00
Q ss_pred Cccc-C--CCCCEEEEcCCCcc-----hHHHHh-hCCCCCEEE
Q 015441 123 KDAD-F--SNVDAVFCCLPHGT-----TQEIIK-GLPKSLKIV 156 (406)
Q Consensus 123 ~~~~-~--~~vDvVF~al~~~~-----s~~~~~-~l~~G~~VI 156 (406)
+.++ + .++|+|+.|+|+.. +.++.. ++++|+.||
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVV 122 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVV 122 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEE
Confidence 1111 1 36899999998633 356654 468999888
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0025 Score=72.64 Aligned_cols=97 Identities=16% Similarity=0.148 Sum_probs=63.2
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCce------------EEEEeccCcC-CccccccccCcccc--CCCcccccCcc
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFG------------IKLMTADRKA-GQSIGSVFPHLISQ--DLPTMVAVKDA 125 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~e------------lv~l~s~~~~-G~~i~~v~p~l~~~--~~~~~~~~~~~ 125 (406)
.+|.||+|+| .|++|+..++.|.++|+++ ++.+++.... .+.+...++..... +....+.+ ..
T Consensus 567 ~~~~rIlVLG-AG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L-~~ 644 (1042)
T PLN02819 567 KKSQNVLILG-AGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESL-LK 644 (1042)
T ss_pred ccCCcEEEEC-CCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHH-HH
Confidence 4467999999 5999999999999888877 6777764321 12222222221110 11111111 11
Q ss_pred cCCCCCEEEEcCCCcchHHHHhh-CCCCCEEEEcC
Q 015441 126 DFSNVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLS 159 (406)
Q Consensus 126 ~~~~vDvVF~al~~~~s~~~~~~-l~~G~~VIDlS 159 (406)
.+.++|+|+.|+|...-.+++++ +++|+.++|.+
T Consensus 645 ~v~~~DaVIsalP~~~H~~VAkaAieaGkHvv~ek 679 (1042)
T PLN02819 645 YVSQVDVVISLLPASCHAVVAKACIELKKHLVTAS 679 (1042)
T ss_pred hhcCCCEEEECCCchhhHHHHHHHHHcCCCEEECc
Confidence 12579999999999877777776 48899999987
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0017 Score=56.45 Aligned_cols=94 Identities=18% Similarity=0.335 Sum_probs=54.1
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCc-cccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQ-SIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~-~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
..+||+||| .|.+|..|.++|.+.. .++..+.+++.... +.... +.... ...+ .+...++|++|+|+|..
T Consensus 9 ~~l~I~iIG-aGrVG~~La~aL~~ag-~~v~~v~srs~~sa~~a~~~---~~~~~---~~~~-~~~~~~aDlv~iavpDd 79 (127)
T PF10727_consen 9 ARLKIGIIG-AGRVGTALARALARAG-HEVVGVYSRSPASAERAAAF---IGAGA---ILDL-EEILRDADLVFIAVPDD 79 (127)
T ss_dssp ---EEEEEC-TSCCCCHHHHHHHHTT-SEEEEESSCHH-HHHHHHC-----TT--------T-TGGGCC-SEEEE-S-CC
T ss_pred CccEEEEEC-CCHHHHHHHHHHHHCC-CeEEEEEeCCcccccccccc---ccccc---cccc-ccccccCCEEEEEechH
Confidence 347999999 6999999999998654 57888887654321 11110 11111 1111 23346899999999998
Q ss_pred chHHHHhhC-C-----CCCEEEEcCCcccC
Q 015441 141 TTQEIIKGL-P-----KSLKIVDLSADFRL 164 (406)
Q Consensus 141 ~s~~~~~~l-~-----~G~~VIDlSa~fRl 164 (406)
.-.+.++.+ . .|..|+=.|+..-+
T Consensus 80 aI~~va~~La~~~~~~~g~iVvHtSGa~~~ 109 (127)
T PF10727_consen 80 AIAEVAEQLAQYGAWRPGQIVVHTSGALGS 109 (127)
T ss_dssp HHHHHHHHHHCC--S-TT-EEEES-SS--G
T ss_pred HHHHHHHHHHHhccCCCCcEEEECCCCChH
Confidence 777777654 2 47788889998643
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0055 Score=62.62 Aligned_cols=80 Identities=15% Similarity=0.203 Sum_probs=55.8
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
+.+|+|+|-+|.+|+.|.+.|.+....+++.+ ++. ++ . .... ++.+.++|+||+|+|-...
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~-D~~------d~------~-----~~~~-~~~v~~aDlVilavPv~~~ 64 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGH-DPA------DP------G-----SLDP-ATLLQRADVLIFSAPIRHT 64 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEE-cCC------cc------c-----cCCH-HHHhcCCCEEEEeCCHHHH
Confidence 36899999889999999999985435566544 221 10 0 0000 2234689999999999888
Q ss_pred HHHHhh-------CCCCCEEEEcCCc
Q 015441 143 QEIIKG-------LPKSLKIVDLSAD 161 (406)
Q Consensus 143 ~~~~~~-------l~~G~~VIDlSa~ 161 (406)
.++++. +..|+.|.|.++-
T Consensus 65 ~~~l~~l~~~~~~l~~~~iVtDVgSv 90 (370)
T PRK08818 65 AALIEEYVALAGGRAAGQLWLDVTSI 90 (370)
T ss_pred HHHHHHHhhhhcCCCCCeEEEECCCC
Confidence 776654 3468999999884
|
|
| >TIGR02130 dapB_plant dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0056 Score=59.95 Aligned_cols=91 Identities=8% Similarity=0.111 Sum_probs=59.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEE-eccCcCCccccccccCccccCCCcc------cccCcccCCC-CC-EEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLM-TADRKAGQSIGSVFPHLISQDLPTM------VAVKDADFSN-VD-AVF 134 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l-~s~~~~G~~i~~v~p~l~~~~~~~~------~~~~~~~~~~-vD-vVF 134 (406)
+||.|+||+|..|+++++.+.+ ++++|+.. .+.+..|..+.++. +.+++.. ..+ ...+.. .| +++
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~-~~~~Lv~~~~~~~~~~~~~~~~~----g~~v~v~~~~~~~~~l-~~~~~~~~d~VvI 74 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADA-AGLEIVPTSFGGEEEAENEAEVA----GKEILLHGPSEREARI-GEVFAKYPELICI 74 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhc-CCCEEEeeEccccccccchhhhc----ccceeeeccccccccH-HHHHhhcCCEEEE
Confidence 5899999999999999999888 89999986 55444554444322 1122211 111 111223 78 999
Q ss_pred EcCCCcchHHHHhhC-CCCCE-EEEcCC
Q 015441 135 CCLPHGTTQEIIKGL-PKSLK-IVDLSA 160 (406)
Q Consensus 135 ~al~~~~s~~~~~~l-~~G~~-VIDlSa 160 (406)
..+-+....+.++.+ +.|+. ||-.++
T Consensus 75 DFT~P~~~~~n~~~~~~~gv~~ViGTTG 102 (275)
T TIGR02130 75 DYTHPSAVNDNAAFYGKHGIPFVMGTTG 102 (275)
T ss_pred ECCChHHHHHHHHHHHHCCCCEEEcCCC
Confidence 999888888888765 67775 443443
|
This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome. |
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0051 Score=62.91 Aligned_cols=83 Identities=18% Similarity=0.359 Sum_probs=56.9
Q ss_pred ccccCCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEc
Q 015441 57 TQKSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCC 136 (406)
Q Consensus 57 ~~~~~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~a 136 (406)
.+.+.++.+|+|+|++|.+|+.+.+.|.... .++..+ +++. + + .. .+.+.++|+||+|
T Consensus 92 ~~~~~~~~~I~IiGG~GlmG~slA~~l~~~G-~~V~~~-d~~~-----------~---~--~~----~~~~~~aDlVila 149 (374)
T PRK11199 92 KTLNPDLRPVVIVGGKGQLGRLFAKMLTLSG-YQVRIL-EQDD-----------W---D--RA----EDILADAGMVIVS 149 (374)
T ss_pred cccCcccceEEEEcCCChhhHHHHHHHHHCC-CeEEEe-CCCc-----------c---h--hH----HHHHhcCCEEEEe
Confidence 4444456799999999999999999998643 344333 3221 0 0 00 1223579999999
Q ss_pred CCCcchHHHHhhC---CCCCEEEEcCCc
Q 015441 137 LPHGTTQEIIKGL---PKSLKIVDLSAD 161 (406)
Q Consensus 137 l~~~~s~~~~~~l---~~G~~VIDlSa~ 161 (406)
+|.....+..+.+ ..|+.|+|+++-
T Consensus 150 vP~~~~~~~~~~l~~l~~~~iv~Dv~Sv 177 (374)
T PRK11199 150 VPIHLTEEVIARLPPLPEDCILVDLTSV 177 (374)
T ss_pred CcHHHHHHHHHHHhCCCCCcEEEECCCc
Confidence 9988877766543 468999999883
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0054 Score=62.32 Aligned_cols=37 Identities=22% Similarity=0.410 Sum_probs=30.2
Q ss_pred ccCCccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 59 KSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 59 ~~~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
++.+++||.|.||||++|+.|++.|.+....+++++.
T Consensus 10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~ 46 (386)
T PLN02427 10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALD 46 (386)
T ss_pred CcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEe
Confidence 4555679999999999999999999876446777774
|
|
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0075 Score=62.75 Aligned_cols=86 Identities=22% Similarity=0.338 Sum_probs=54.2
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCC---------CceEEEEeccCcCCccccccccCccccCCCcccccCcccC--CCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHP---------YFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADF--SNVD 131 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp---------~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vD 131 (406)
++||||+| .|.+|+.++++|.+|+ .++++++.+++.. +.-... +.. .....+. ++.+ .++|
T Consensus 3 ~i~VgiiG-~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~-~~~~~~---~~~--~~~~~d~-~~ll~d~~iD 74 (426)
T PRK06349 3 PLKVGLLG-LGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLE-KDRGVD---LPG--ILLTTDP-EELVNDPDID 74 (426)
T ss_pred eEEEEEEe-eCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChh-hccCCC---Ccc--cceeCCH-HHHhhCCCCC
Confidence 58999999 9999999999997653 6789998875421 110000 000 0001111 1111 3689
Q ss_pred EEEEcCCC-cchHHHHh-hCCCCCEEE
Q 015441 132 AVFCCLPH-GTTQEIIK-GLPKSLKIV 156 (406)
Q Consensus 132 vVF~al~~-~~s~~~~~-~l~~G~~VI 156 (406)
+|+.|++. ....++.. ++++|+.||
T Consensus 75 vVve~tg~~~~~~~~~~~aL~~GkhVV 101 (426)
T PRK06349 75 IVVELMGGIEPARELILKALEAGKHVV 101 (426)
T ss_pred EEEECCCCchHHHHHHHHHHHCCCeEE
Confidence 99999875 44566774 568999888
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0029 Score=64.50 Aligned_cols=93 Identities=20% Similarity=0.235 Sum_probs=52.6
Q ss_pred EEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-ccccc--cccCccc--cCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-QSIGS--VFPHLIS--QDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 66 VaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-~~i~~--v~p~l~~--~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
|.|+|+ |++|+.+++.|.+++..+-+.+++++... +.+.. ....+.. .+......+ ...+.++|+|+.|+|..
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l-~~~~~~~dvVin~~gp~ 78 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESL-AELLRGCDVVINCAGPF 78 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHH-HHHHTTSSEEEE-SSGG
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHH-HHHHhcCCEEEECCccc
Confidence 789999 99999999999998877444555543211 11110 0011111 111111111 11247899999999988
Q ss_pred chHHHHhhC-CCCCEEEEcCC
Q 015441 141 TTQEIIKGL-PKSLKIVDLSA 160 (406)
Q Consensus 141 ~s~~~~~~l-~~G~~VIDlSa 160 (406)
....+++++ ++|+..||.|.
T Consensus 79 ~~~~v~~~~i~~g~~yvD~~~ 99 (386)
T PF03435_consen 79 FGEPVARACIEAGVHYVDTSY 99 (386)
T ss_dssp GHHHHHHHHHHHT-EEEESS-
T ss_pred hhHHHHHHHHHhCCCeeccch
Confidence 777788764 78999999554
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0094 Score=55.69 Aligned_cols=61 Identities=18% Similarity=0.365 Sum_probs=47.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
+||+|+|++|..|+.+.+.+.+. .+++. +.++|+||+|+|-....
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~-g~~v~----------------------------------~~~~DlVilavPv~~~~ 45 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN-GLGVY----------------------------------IKKADHAFLSVPIDAAL 45 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC-CCEEE----------------------------------ECCCCEEEEeCCHHHHH
Confidence 48999999999999999998743 22221 13689999999999888
Q ss_pred HHHhhCCCCCEEEEcCCc
Q 015441 144 EIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 144 ~~~~~l~~G~~VIDlSa~ 161 (406)
++++.+.. .|+|.++-
T Consensus 46 ~~i~~~~~--~v~Dv~Sv 61 (197)
T PRK06444 46 NYIESYDN--NFVEISSV 61 (197)
T ss_pred HHHHHhCC--eEEecccc
Confidence 88876542 58899884
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0082 Score=59.75 Aligned_cols=88 Identities=18% Similarity=0.323 Sum_probs=54.6
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccC-CCCCEEEEcCCCc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADF-SNVDAVFCCLPHG 140 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~-~~vDvVF~al~~~ 140 (406)
++++|+|+| .|.+|+.+.+.|.+.. .++..+..+ .. ...... + + .....+. .+.. .++|+||+|+|..
T Consensus 35 ~~~kI~IIG-~G~mG~slA~~L~~~G-~~V~~~d~~-~~-~~~a~~---~-g--v~~~~~~-~e~~~~~aDvVilavp~~ 103 (304)
T PLN02256 35 RKLKIGIVG-FGNFGQFLAKTFVKQG-HTVLATSRS-DY-SDIAAE---L-G--VSFFRDP-DDFCEEHPDVVLLCTSIL 103 (304)
T ss_pred CCCEEEEEe-eCHHHHHHHHHHHhCC-CEEEEEECc-cH-HHHHHH---c-C--CeeeCCH-HHHhhCCCCEEEEecCHH
Confidence 457899999 8999999999998654 466655432 21 111100 1 1 1111111 1111 3689999999988
Q ss_pred chHHHHhhC-----CCCCEEEEcCC
Q 015441 141 TTQEIIKGL-----PKSLKIVDLSA 160 (406)
Q Consensus 141 ~s~~~~~~l-----~~G~~VIDlSa 160 (406)
...++++.+ ..++.|+|.++
T Consensus 104 ~~~~vl~~l~~~~l~~~~iviDv~S 128 (304)
T PLN02256 104 STEAVLRSLPLQRLKRSTLFVDVLS 128 (304)
T ss_pred HHHHHHHhhhhhccCCCCEEEecCC
Confidence 777766543 35789999988
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.011 Score=58.29 Aligned_cols=94 Identities=24% Similarity=0.309 Sum_probs=55.9
Q ss_pred CccEEEEECcccHHHHHHHHHHHc-CCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLAN-HPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~-hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
++++|+|+| .|.+|+.+.+.|.. +....+... +++.+....... +...+ ............++|+||+|+|-.
T Consensus 2 ~~~~v~IvG-~GliG~s~a~~l~~~g~~v~i~g~--d~~~~~~~~a~~--lgv~d-~~~~~~~~~~~~~aD~VivavPi~ 75 (279)
T COG0287 2 ASMKVGIVG-LGLMGGSLARALKEAGLVVRIIGR--DRSAATLKAALE--LGVID-ELTVAGLAEAAAEADLVIVAVPIE 75 (279)
T ss_pred CCcEEEEEC-CchHHHHHHHHHHHcCCeEEEEee--cCcHHHHHHHhh--cCccc-ccccchhhhhcccCCEEEEeccHH
Confidence 457899999 99999999999984 444444333 222111111000 00000 000010012235689999999998
Q ss_pred chHHHHhhC----CCCCEEEEcCCc
Q 015441 141 TTQEIIKGL----PKSLKIVDLSAD 161 (406)
Q Consensus 141 ~s~~~~~~l----~~G~~VIDlSa~ 161 (406)
.+.++++.+ +.|+.|.|.++.
T Consensus 76 ~~~~~l~~l~~~l~~g~iv~Dv~S~ 100 (279)
T COG0287 76 ATEEVLKELAPHLKKGAIVTDVGSV 100 (279)
T ss_pred HHHHHHHHhcccCCCCCEEEecccc
Confidence 887777653 569999999885
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0089 Score=55.16 Aligned_cols=71 Identities=18% Similarity=0.370 Sum_probs=42.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCcc--ccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLI--SQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~--~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
|||||+||||.+|.++++-....- .|+++++...+ |--. .+.+. ..|+-+...+ .+++.+.|+|+.+-+..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RG-HeVTAivRn~~--K~~~--~~~~~i~q~Difd~~~~-a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRG-HEVTAIVRNAS--KLAA--RQGVTILQKDIFDLTSL-ASDLAGHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCC-CeeEEEEeChH--hccc--cccceeecccccChhhh-HhhhcCCceEEEeccCC
Confidence 589999999999999999777543 47888873221 1100 01111 1222212111 25667899999987655
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0032 Score=51.02 Aligned_cols=90 Identities=13% Similarity=0.256 Sum_probs=53.1
Q ss_pred EEEEECcccHHHHHHHHHHHcCC--CceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 65 RIGLLGASGYTGAEIVRLLANHP--YFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp--~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
||+|+| +|..|..|++-|.++. ..++..+++++.. +..+....+. .........+.++.+|+||+|.+....
T Consensus 1 kI~iIG-~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~--~~~~~~~~~~---~~~~~~~~~~~~~~advvilav~p~~~ 74 (96)
T PF03807_consen 1 KIGIIG-AGNMGSALARGLLASGIKPHEVIIVSSRSPE--KAAELAKEYG---VQATADDNEEAAQEADVVILAVKPQQL 74 (96)
T ss_dssp EEEEES-TSHHHHHHHHHHHHTTS-GGEEEEEEESSHH--HHHHHHHHCT---TEEESEEHHHHHHHTSEEEE-S-GGGH
T ss_pred CEEEEC-CCHHHHHHHHHHHHCCCCceeEEeeccCcHH--HHHHHHHhhc---cccccCChHHhhccCCEEEEEECHHHH
Confidence 799998 9999999999887653 3466555454321 1111110111 000110012223578999999999988
Q ss_pred HHHHhhC---CCCCEEEEcCC
Q 015441 143 QEIIKGL---PKSLKIVDLSA 160 (406)
Q Consensus 143 ~~~~~~l---~~G~~VIDlSa 160 (406)
.+.++.+ .++..|||..+
T Consensus 75 ~~v~~~i~~~~~~~~vis~~a 95 (96)
T PF03807_consen 75 PEVLSEIPHLLKGKLVISIAA 95 (96)
T ss_dssp HHHHHHHHHHHTTSEEEEEST
T ss_pred HHHHHHHhhccCCCEEEEeCC
Confidence 8877654 46788998764
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.003 Score=59.36 Aligned_cols=73 Identities=26% Similarity=0.415 Sum_probs=43.4
Q ss_pred EEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC--CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA--GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 66 VaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~--G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
|+|+||||.+|+.+++.|.. +.++++++..+... -+.+...--.+...++.....+ ...+.++|.||++++..
T Consensus 1 I~V~GatG~~G~~v~~~L~~-~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l-~~al~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS-AGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESL-VAALKGVDAVFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH-TTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHH-HHHHTTCSEEEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHh-CCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHH-HHHHcCCceEEeecCcc
Confidence 78999999999999999988 67889888753311 0111110000001111111111 22368999999999943
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.0063 Score=61.44 Aligned_cols=91 Identities=16% Similarity=0.257 Sum_probs=53.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcC-CCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANH-PYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~h-p~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
.+|.|+||+|.+|+++++.|..+ ...+++.+. +... ++......+...+ +..+ .+.+.++|+||.+++....
T Consensus 156 k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~-R~~~--rl~~La~el~~~~---i~~l-~~~l~~aDiVv~~ts~~~~ 228 (340)
T PRK14982 156 ATVAVVGATGDIGSAVCRWLDAKTGVAELLLVA-RQQE--RLQELQAELGGGK---ILSL-EEALPEADIVVWVASMPKG 228 (340)
T ss_pred CEEEEEccChHHHHHHHHHHHhhCCCCEEEEEc-CCHH--HHHHHHHHhcccc---HHhH-HHHHccCCEEEECCcCCcC
Confidence 57999999999999999999753 334665554 3211 1111110111111 1112 1234689999999975332
Q ss_pred HHH-HhhCCCCCEEEEcCCc
Q 015441 143 QEI-IKGLPKSLKIVDLSAD 161 (406)
Q Consensus 143 ~~~-~~~l~~G~~VIDlSa~ 161 (406)
..+ ...+.+++.|||++=+
T Consensus 229 ~~I~~~~l~~~~~viDiAvP 248 (340)
T PRK14982 229 VEIDPETLKKPCLMIDGGYP 248 (340)
T ss_pred CcCCHHHhCCCeEEEEecCC
Confidence 111 1235678999999865
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.0076 Score=55.51 Aligned_cols=94 Identities=18% Similarity=0.156 Sum_probs=52.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCcc---ccCCCcccccCc----ccCCCCCEEEEc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLI---SQDLPTMVAVKD----ADFSNVDAVFCC 136 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~---~~~~~~~~~~~~----~~~~~vDvVF~a 136 (406)
.++.|+|+||.+|+.+++.|..+. .+++.+ +++. .+.......+. +..+......+. +.+.++|+||.|
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~-~R~~--~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~a 104 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREG-ARVVLV-GRDL--ERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAA 104 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEE-cCCH--HHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEEC
Confidence 589999999999999999998764 466555 4332 11111100000 000000000111 224689999999
Q ss_pred CCCcchHHH-Hhh-CCCCCEEEEcCCc
Q 015441 137 LPHGTTQEI-IKG-LPKSLKIVDLSAD 161 (406)
Q Consensus 137 l~~~~s~~~-~~~-l~~G~~VIDlSa~ 161 (406)
++.+..... .+. ...+..|+|+...
T Consensus 105 t~~g~~~~~~~~~~~~~~~vv~D~~~~ 131 (194)
T cd01078 105 GAAGVELLEKLAWAPKPLAVAADVNAV 131 (194)
T ss_pred CCCCceechhhhcccCceeEEEEccCC
Confidence 998773111 122 2346789998764
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.0044 Score=54.67 Aligned_cols=75 Identities=16% Similarity=0.309 Sum_probs=42.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccC--cCCccccccccC-ccccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADR--KAGQSIGSVFPH-LISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~--~~G~~i~~v~p~-l~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
+||+|+||+|.||..++-.|...+-. |++.+-... ..|...+.-|-. +..... .+..-+.+++.++|+|+++.+.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~-~i~~~~~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPV-RITSGDYEALKDADIVVITAGV 79 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEE-EEEESSGGGGTTESEEEETTST
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccc-ccccccccccccccEEEEeccc
Confidence 58999999999999999999866654 565554321 122222211100 000011 1111224456789999888764
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.016 Score=58.19 Aligned_cols=33 Identities=21% Similarity=0.422 Sum_probs=27.1
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCc------eEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYF------GIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~------elv~l~ 95 (406)
..||+|+||+|++|..++..|...+.+ +++++.
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D 40 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLD 40 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEE
Confidence 478999999999999999999875543 777764
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.011 Score=56.04 Aligned_cols=88 Identities=14% Similarity=0.251 Sum_probs=58.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcC-CCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANH-PYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~h-p~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
++|+|+| .|.+|+.+++++.+. -.+|++++.++... +......++..... ..+ ++...++|+++.|..+..-
T Consensus 1 l~vgiVG-cGaIG~~l~e~v~~~~~~~e~v~v~D~~~e--k~~~~~~~~~~~~~---s~i-de~~~~~DlvVEaAS~~Av 73 (255)
T COG1712 1 LKVGIVG-CGAIGKFLLELVRDGRVDFELVAVYDRDEE--KAKELEASVGRRCV---SDI-DELIAEVDLVVEAASPEAV 73 (255)
T ss_pred CeEEEEe-ccHHHHHHHHHHhcCCcceeEEEEecCCHH--HHHHHHhhcCCCcc---ccH-HHHhhccceeeeeCCHHHH
Confidence 4799999 999999999999865 35789999876431 11111112222211 222 2223789999999999988
Q ss_pred HHHHhh-CCCCC--EEEEc
Q 015441 143 QEIIKG-LPKSL--KIVDL 158 (406)
Q Consensus 143 ~~~~~~-l~~G~--~VIDl 158 (406)
+++.++ |++|+ .|++.
T Consensus 74 ~e~~~~~L~~g~d~iV~SV 92 (255)
T COG1712 74 REYVPKILKAGIDVIVMSV 92 (255)
T ss_pred HHHhHHHHhcCCCEEEEec
Confidence 998875 68876 44443
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.013 Score=57.33 Aligned_cols=89 Identities=17% Similarity=0.227 Sum_probs=52.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
+||+|+| .|.+|+.+.+.|..+. .++..+. ++.. ....... . + ..... ..+.+...++|+||+|+|.....
T Consensus 1 m~I~IIG-~G~mG~sla~~L~~~g-~~V~~~d-~~~~--~~~~a~~-~-g-~~~~~-~~~~~~~~~aDlVilavp~~~~~ 71 (279)
T PRK07417 1 MKIGIVG-LGLIGGSLGLDLRSLG-HTVYGVS-RRES--TCERAIE-R-G-LVDEA-STDLSLLKDCDLVILALPIGLLL 71 (279)
T ss_pred CeEEEEe-ecHHHHHHHHHHHHCC-CEEEEEE-CCHH--HHHHHHH-C-C-Ccccc-cCCHhHhcCCCEEEEcCCHHHHH
Confidence 3799999 9999999999998653 4555443 3211 1111000 0 0 00001 01112346899999999977765
Q ss_pred HHHhh----CCCCCEEEEcCCc
Q 015441 144 EIIKG----LPKSLKIVDLSAD 161 (406)
Q Consensus 144 ~~~~~----l~~G~~VIDlSa~ 161 (406)
+..+. +..++.|+|.++-
T Consensus 72 ~~~~~l~~~l~~~~ii~d~~Sv 93 (279)
T PRK07417 72 PPSEQLIPALPPEAIVTDVGSV 93 (279)
T ss_pred HHHHHHHHhCCCCcEEEeCcch
Confidence 55543 3457888998773
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.012 Score=57.83 Aligned_cols=91 Identities=16% Similarity=0.336 Sum_probs=52.6
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
|++||+|+| .|.+|+.+.+.|..+ ..++... +++.. +... +........... .+.+.++|+||+|+|...
T Consensus 1 ~~~~IgviG-~G~mG~~~a~~l~~~-g~~v~~~-d~~~~--~~~~----~~~~g~~~~~~~-~e~~~~~d~vi~~vp~~~ 70 (296)
T PRK11559 1 MTMKVGFIG-LGIMGKPMSKNLLKA-GYSLVVY-DRNPE--AVAE----VIAAGAETASTA-KAVAEQCDVIITMLPNSP 70 (296)
T ss_pred CCceEEEEc-cCHHHHHHHHHHHHC-CCeEEEE-cCCHH--HHHH----HHHCCCeecCCH-HHHHhcCCEEEEeCCCHH
Confidence 457899999 899999999998864 3455443 33211 1111 000011101111 122367999999999654
Q ss_pred hHH-H-------HhhCCCCCEEEEcCCcc
Q 015441 142 TQE-I-------IKGLPKSLKIVDLSADF 162 (406)
Q Consensus 142 s~~-~-------~~~l~~G~~VIDlSa~f 162 (406)
..+ . .+.+..|..+||.|+..
T Consensus 71 ~~~~v~~~~~~~~~~~~~g~iiid~st~~ 99 (296)
T PRK11559 71 HVKEVALGENGIIEGAKPGTVVIDMSSIA 99 (296)
T ss_pred HHHHHHcCcchHhhcCCCCcEEEECCCCC
Confidence 422 2 12235678899988753
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.014 Score=56.97 Aligned_cols=162 Identities=17% Similarity=0.279 Sum_probs=96.8
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCC--ceEEEEeccCcCCcc--ccccccCccccCCCcccccCc-ccCCCCCEEEEcC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPY--FGIKLMTADRKAGQS--IGSVFPHLISQDLPTMVAVKD-ADFSNVDAVFCCL 137 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~--~elv~l~s~~~~G~~--i~~v~p~l~~~~~~~~~~~~~-~~~~~vDvVF~al 137 (406)
|+||+++| .|-.|+.+++-|.+... -+-+.++.+.. .+. +..-+ .. ....+. +....+|+||+|.
T Consensus 1 ~~~IgfIG-~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~-e~~~~l~~~~---g~-----~~~~~~~~~~~~advv~Lav 70 (266)
T COG0345 1 MMKIGFIG-AGNMGEAILSGLLKSGALPPEEIIVTNRSE-EKRAALAAEY---GV-----VTTTDNQEAVEEADVVFLAV 70 (266)
T ss_pred CceEEEEc-cCHHHHHHHHHHHhcCCCCcceEEEeCCCH-HHHHHHHHHc---CC-----cccCcHHHHHhhCCEEEEEe
Confidence 46899999 99999999998886552 23334443322 211 22111 11 101112 2235799999999
Q ss_pred CCcchHHHHhhCC---CCCEEEEcCCcccCCCccchhhhcCC-C--CCCccchhhhhccccccchhhccCCcEEecCCCh
Q 015441 138 PHGTTQEIIKGLP---KSLKIVDLSADFRLRDVSEYEEWYGQ-P--HIAPDLQKEAVYGLTEISREDIKNARLVANPGCY 211 (406)
Q Consensus 138 ~~~~s~~~~~~l~---~G~~VIDlSa~fRl~~~~~~~~~y~~-~--~~~Pevn~~~vyglpE~~~~~i~~~~iVanPgC~ 211 (406)
.+-.-.+.++.+. ++..||+..+--++ +.+++|.+. + ...|......-.| -.-+..+..|+
T Consensus 71 KPq~~~~vl~~l~~~~~~~lvISiaAGv~~---~~l~~~l~~~~vvR~MPNt~a~vg~g----------~t~i~~~~~~~ 137 (266)
T COG0345 71 KPQDLEEVLSKLKPLTKDKLVISIAAGVSI---ETLERLLGGLRVVRVMPNTPALVGAG----------VTAISANANVS 137 (266)
T ss_pred ChHhHHHHHHHhhcccCCCEEEEEeCCCCH---HHHHHHcCCCceEEeCCChHHHHcCc----------ceeeecCccCC
Confidence 9888878777663 57889998877654 457888861 1 2335444333222 12456668888
Q ss_pred HHHHHHHHHHHHHccC-CCcceEEEEEeeccCccCcc
Q 015441 212 PTSIQLPLVPLIQANL-IQYRNIIIDAKSGVSGAGRG 247 (406)
Q Consensus 212 tta~~l~L~PL~~~~l-~~i~~i~v~t~~gvSGaG~~ 247 (406)
......+..-|-.-|- +.++.-.+++..++||+|-.
T Consensus 138 ~~~~~~v~~l~~~~G~v~~v~E~~~da~TaisGSgPA 174 (266)
T COG0345 138 EEDKAFVEALLSAVGKVVEVEESLMDAVTALSGSGPA 174 (266)
T ss_pred HHHHHHHHHHHHhcCCeEEechHHhhHHHHHhcCCHH
Confidence 7776554444432221 12334468999999999754
|
|
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.0085 Score=55.30 Aligned_cols=98 Identities=19% Similarity=0.232 Sum_probs=65.5
Q ss_pred cCCccEEEEECcccHHHHHHHHHHH-cCCCceEEEEec--cCcCCccccccccCccccCCCcccccCcccCCCCCEEEEc
Q 015441 60 SEKQVRIGLLGASGYTGAEIVRLLA-NHPYFGIKLMTA--DRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCC 136 (406)
Q Consensus 60 ~~~~ikVaIvGATG~vG~eLlrlL~-~hp~~elv~l~s--~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~a 136 (406)
.+++.+|.|+| -|-.|+.|+..-- .+-.++++.+.+ +...|+.+.. +...++..++.. -. -.++|++++|
T Consensus 81 ~~~~tnviiVG-~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~----v~V~~~d~le~~-v~-~~dv~iaiLt 153 (211)
T COG2344 81 QDKTTNVIIVG-VGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGD----VPVYDLDDLEKF-VK-KNDVEIAILT 153 (211)
T ss_pred CCcceeEEEEc-cChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCC----eeeechHHHHHH-HH-hcCccEEEEE
Confidence 46678999999 8999999876432 356788988876 3345665553 111122111110 00 0389999999
Q ss_pred CCCcchHHHHhhC-CCCCEEEEcCCcccC
Q 015441 137 LPHGTTQEIIKGL-PKSLKIVDLSADFRL 164 (406)
Q Consensus 137 l~~~~s~~~~~~l-~~G~~VIDlSa~fRl 164 (406)
.|...+++.+..+ ++|++-|=+-++-|+
T Consensus 154 VPa~~AQ~vad~Lv~aGVkGIlNFtPv~l 182 (211)
T COG2344 154 VPAEHAQEVADRLVKAGVKGILNFTPVRL 182 (211)
T ss_pred ccHHHHHHHHHHHHHcCCceEEeccceEe
Confidence 9999999999887 899998844444444
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.016 Score=58.81 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=31.1
Q ss_pred CcccccCCccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 55 GKTQKSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 55 ~~~~~~~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+...+.+.+||.|.||||++|+.|++.|.++. .+++.+.
T Consensus 13 ~~~~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G-~~V~~v~ 52 (370)
T PLN02695 13 REPYWPSEKLRICITGAGGFIASHIARRLKAEG-HYIIASD 52 (370)
T ss_pred CCCCCCCCCCEEEEECCccHHHHHHHHHHHhCC-CEEEEEE
Confidence 334444556799999999999999999998764 5777765
|
|
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.012 Score=58.45 Aligned_cols=89 Identities=18% Similarity=0.342 Sum_probs=59.0
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCC-ceEEEEeccCcC-CccccccccCccccCCCcccccCcccC--CCCCEEEEcC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPY-FGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCL 137 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~-~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~al 137 (406)
+++||||+|+.|+.++..+..+.+.+. ++++++.++... .+.+...++ . . ..+.++ ++.+ .++|+|+.|+
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~---~-~-~~~~~~-~~ll~~~~iD~V~Iat 75 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFG---I-A-KAYTDL-EELLADPDIDAVYIAT 75 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcC---C-C-cccCCH-HHHhcCCCCCEEEEcC
Confidence 578999999777888889999998887 699999875432 122222111 0 0 011111 1111 3589999999
Q ss_pred CCcchHHHHh-hCCCCCEEE
Q 015441 138 PHGTTQEIIK-GLPKSLKIV 156 (406)
Q Consensus 138 ~~~~s~~~~~-~l~~G~~VI 156 (406)
|+..=.+++. ++++|+.|+
T Consensus 76 p~~~H~e~~~~AL~aGkhVl 95 (342)
T COG0673 76 PNALHAELALAALEAGKHVL 95 (342)
T ss_pred CChhhHHHHHHHHhcCCEEE
Confidence 9887777775 468999887
|
|
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.018 Score=54.21 Aligned_cols=93 Identities=18% Similarity=0.260 Sum_probs=60.2
Q ss_pred ccEEEEECcccHHHHHHHHHHH-cCCCceEEEEeccCc--CCccccccccCccccCCCcccccCcccC--CCCCEEEEcC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLA-NHPYFGIKLMTADRK--AGQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCL 137 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~-~hp~~elv~l~s~~~--~G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~al 137 (406)
+.+|+|+| +|.+|+.+++.+. ..+.++++++.+++. .|+.+.. + .+.....+ .+.+ .++|+|+.|+
T Consensus 84 ~~rV~IIG-aG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g----~---~v~~~~~l-~~li~~~~iD~ViIa~ 154 (213)
T PRK05472 84 TWNVALVG-AGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGG----I---PVYHIDEL-EEVVKENDIEIGILTV 154 (213)
T ss_pred CcEEEEEC-CCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCC----e---EEcCHHHH-HHHHHHCCCCEEEEeC
Confidence 46899999 9999999999753 345789999887532 2222211 0 01011111 1111 3699999999
Q ss_pred CCcchHHHHhhC-CCCCEEEEcCCcccC
Q 015441 138 PHGTTQEIIKGL-PKSLKIVDLSADFRL 164 (406)
Q Consensus 138 ~~~~s~~~~~~l-~~G~~VIDlSa~fRl 164 (406)
|.....++...+ ++|++.|.+-.++.+
T Consensus 155 P~~~~~~i~~~l~~~Gi~~il~~~p~~~ 182 (213)
T PRK05472 155 PAEAAQEVADRLVEAGIKGILNFAPVRL 182 (213)
T ss_pred CchhHHHHHHHHHHcCCCEEeecCceee
Confidence 998887777665 789877766555554
|
|
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.0066 Score=51.30 Aligned_cols=82 Identities=12% Similarity=0.193 Sum_probs=49.0
Q ss_pred ccHHHHHHHHHHHcCC---CceEEEEeccCc-CCccccccccCccccCCCcccccCcccCC--CCCEEEEcCCCcchHHH
Q 015441 72 SGYTGAEIVRLLANHP---YFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAVKDADFS--NVDAVFCCLPHGTTQEI 145 (406)
Q Consensus 72 TG~vG~eLlrlL~~hp---~~elv~l~s~~~-~G~~i~~v~p~l~~~~~~~~~~~~~~~~~--~vDvVF~al~~~~s~~~ 145 (406)
.|.||+.|+++|..+. .++++.+.+++. ........ +. ......++ ++.+. +.|+|+.|++.....++
T Consensus 2 ~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~---~~--~~~~~~~~-~~~~~~~~~dvvVE~t~~~~~~~~ 75 (117)
T PF03447_consen 2 FGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAAS---FP--DEAFTTDL-EELIDDPDIDVVVECTSSEAVAEY 75 (117)
T ss_dssp -SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHH---HT--HSCEESSH-HHHHTHTT-SEEEE-SSCHHHHHH
T ss_pred CCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhh---cc--cccccCCH-HHHhcCcCCCEEEECCCchHHHHH
Confidence 7999999999999765 789999988661 00110000 00 00111111 11112 78999999999888887
Q ss_pred Hhh-CCCCCEEEEcC
Q 015441 146 IKG-LPKSLKIVDLS 159 (406)
Q Consensus 146 ~~~-l~~G~~VIDlS 159 (406)
.+. +++|+.||-.|
T Consensus 76 ~~~~L~~G~~VVt~n 90 (117)
T PF03447_consen 76 YEKALERGKHVVTAN 90 (117)
T ss_dssp HHHHHHTTCEEEES-
T ss_pred HHHHHHCCCeEEEEC
Confidence 765 68999888443
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.013 Score=62.87 Aligned_cols=31 Identities=26% Similarity=0.239 Sum_probs=25.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
..|.|.||+|++|+.+++.|+.. ..+++++.
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~-G~~Vval~ 111 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKL-GFRVRAGV 111 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCeEEEEe
Confidence 46999999999999999999865 35676664
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.022 Score=55.05 Aligned_cols=30 Identities=30% Similarity=0.371 Sum_probs=24.8
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+|.|.||||++|+.+++.|.+. ..+++++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~-g~~V~~~~ 30 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA-SVPFLVAS 30 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC-CCcEEEEe
Confidence 4899999999999999998864 35676665
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.011 Score=59.73 Aligned_cols=86 Identities=13% Similarity=0.285 Sum_probs=52.9
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCC-CceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCC-
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHP-YFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLP- 138 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp-~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~- 138 (406)
.++||+|+|+ |+ |+..++.+.+.| .++++++.++... .+.+.+-+. ++.+.+. ++.+.+.|+++.+.+
T Consensus 2 ~~~rVgViG~-~~-G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~g------i~~y~~~-eell~d~Di~~V~ipt 72 (343)
T TIGR01761 2 DVQSVVVCGT-RF-GQFYLAAFAAAPERFELAGILAQGSERSRALAHRLG------VPLYCEV-EELPDDIDIACVVVRS 72 (343)
T ss_pred CCcEEEEEeH-HH-HHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhC------CCccCCH-HHHhcCCCEEEEEeCC
Confidence 3589999997 76 999999998888 8999999986532 222222221 1112222 122345566666553
Q ss_pred ---CcchHHHHhh-CCCCCEEE
Q 015441 139 ---HGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 139 ---~~~s~~~~~~-l~~G~~VI 156 (406)
+..=.+++.+ +++|+.|+
T Consensus 73 ~~P~~~H~e~a~~aL~aGkHVL 94 (343)
T TIGR01761 73 AIVGGQGSALARALLARGIHVL 94 (343)
T ss_pred CCCCccHHHHHHHHHhCCCeEE
Confidence 3343566654 68999887
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.0052 Score=55.19 Aligned_cols=87 Identities=21% Similarity=0.431 Sum_probs=48.0
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccCccccCCCcccccCccc-CCCCCEEEEcCCCc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAVKDAD-FSNVDAVFCCLPHG 140 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~l~~~~~~~~~~~~~~~-~~~vDvVF~al~~~ 140 (406)
|+||+++| .|..|..+.+.|.++. +++... +++. .-+++. ........ +..+ ..++|+||.|+++.
T Consensus 1 m~~Ig~IG-lG~mG~~~a~~L~~~g-~~v~~~-d~~~~~~~~~~-------~~g~~~~~--s~~e~~~~~dvvi~~v~~~ 68 (163)
T PF03446_consen 1 MMKIGFIG-LGNMGSAMARNLAKAG-YEVTVY-DRSPEKAEALA-------EAGAEVAD--SPAEAAEQADVVILCVPDD 68 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTT-TEEEEE-ESSHHHHHHHH-------HTTEEEES--SHHHHHHHBSEEEE-SSSH
T ss_pred CCEEEEEc-hHHHHHHHHHHHHhcC-CeEEee-ccchhhhhhhH-------Hhhhhhhh--hhhhHhhcccceEeecccc
Confidence 57999999 8999999999998653 566554 3321 111111 00111011 1222 35679999999986
Q ss_pred ch-HHHH------hhCCCCCEEEEcCCc
Q 015441 141 TT-QEII------KGLPKSLKIVDLSAD 161 (406)
Q Consensus 141 ~s-~~~~------~~l~~G~~VIDlSa~ 161 (406)
.+ .+.. +.+..|..+||+|..
T Consensus 69 ~~v~~v~~~~~i~~~l~~g~iiid~sT~ 96 (163)
T PF03446_consen 69 DAVEAVLFGENILAGLRPGKIIIDMSTI 96 (163)
T ss_dssp HHHHHHHHCTTHGGGS-TTEEEEE-SS-
T ss_pred hhhhhhhhhhHHhhccccceEEEecCCc
Confidence 55 3333 234578899999875
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.011 Score=53.86 Aligned_cols=85 Identities=18% Similarity=0.291 Sum_probs=50.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCC----
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH---- 139 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~---- 139 (406)
.+|+|+| +|.||+++.++|..+- +++.++............ . + . ...++ ++.+..+|+|++++|.
T Consensus 37 ~tvgIiG-~G~IG~~vA~~l~~fG-~~V~~~d~~~~~~~~~~~----~-~--~-~~~~l-~ell~~aDiv~~~~plt~~T 105 (178)
T PF02826_consen 37 KTVGIIG-YGRIGRAVARRLKAFG-MRVIGYDRSPKPEEGADE----F-G--V-EYVSL-DELLAQADIVSLHLPLTPET 105 (178)
T ss_dssp SEEEEES-TSHHHHHHHHHHHHTT--EEEEEESSCHHHHHHHH----T-T--E-EESSH-HHHHHH-SEEEE-SSSSTTT
T ss_pred CEEEEEE-EcCCcCeEeeeeecCC-ceeEEecccCChhhhccc----c-c--c-eeeeh-hhhcchhhhhhhhhcccccc
Confidence 5799999 9999999999999764 577666533221110010 0 0 0 01112 2234679999999993
Q ss_pred --cchHHHHhhCCCCCEEEEcC
Q 015441 140 --GTTQEIIKGLPKSLKIVDLS 159 (406)
Q Consensus 140 --~~s~~~~~~l~~G~~VIDlS 159 (406)
-+.++...+++.|..+|..+
T Consensus 106 ~~li~~~~l~~mk~ga~lvN~a 127 (178)
T PF02826_consen 106 RGLINAEFLAKMKPGAVLVNVA 127 (178)
T ss_dssp TTSBSHHHHHTSTTTEEEEESS
T ss_pred ceeeeeeeeeccccceEEEecc
Confidence 33355556667888999544
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.025 Score=56.32 Aligned_cols=32 Identities=31% Similarity=0.587 Sum_probs=26.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCc-eEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~ 95 (406)
+||+|+||||++|..++..|...+.. +++++.
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd 33 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLIS 33 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEE
Confidence 58999999999999999999876654 566664
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.017 Score=57.00 Aligned_cols=91 Identities=22% Similarity=0.344 Sum_probs=55.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc-h
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT-T 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~-s 142 (406)
.+|+|+| .|.+|+.+++.|..+. .++... +++.. +..... ........ ..++ .+.+.++|+||.|+|... .
T Consensus 152 k~v~IiG-~G~iG~avA~~L~~~G-~~V~v~-~R~~~--~~~~~~-~~g~~~~~-~~~l-~~~l~~aDiVint~P~~ii~ 223 (287)
T TIGR02853 152 SNVMVLG-FGRTGMTIARTFSALG-ARVFVG-ARSSA--DLARIT-EMGLIPFP-LNKL-EEKVAEIDIVINTIPALVLT 223 (287)
T ss_pred CEEEEEc-ChHHHHHHHHHHHHCC-CEEEEE-eCCHH--HHHHHH-HCCCeeec-HHHH-HHHhccCCEEEECCChHHhC
Confidence 4799999 7999999999998775 466544 33321 111000 00000111 1111 223468999999999764 3
Q ss_pred HHHHhhCCCCCEEEEcCCcc
Q 015441 143 QEIIKGLPKSLKIVDLSADF 162 (406)
Q Consensus 143 ~~~~~~l~~G~~VIDlSa~f 162 (406)
.+..+.+..+..+||+++.-
T Consensus 224 ~~~l~~~k~~aliIDlas~P 243 (287)
T TIGR02853 224 ADVLSKLPKHAVIIDLASKP 243 (287)
T ss_pred HHHHhcCCCCeEEEEeCcCC
Confidence 44555567789999998853
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.021 Score=56.61 Aligned_cols=89 Identities=21% Similarity=0.349 Sum_probs=55.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT- 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~- 141 (406)
.||+|+| .|.+|+.+++.|..+. .++..+ +++.. -....+ + +.....+..+ .+.+.++|+||.|+|...
T Consensus 153 ~kvlViG-~G~iG~~~a~~L~~~G-a~V~v~-~r~~~~~~~~~~----~-G~~~~~~~~l-~~~l~~aDiVI~t~p~~~i 223 (296)
T PRK08306 153 SNVLVLG-FGRTGMTLARTLKALG-ANVTVG-ARKSAHLARITE----M-GLSPFHLSEL-AEEVGKIDIIFNTIPALVL 223 (296)
T ss_pred CEEEEEC-CcHHHHHHHHHHHHCC-CEEEEE-ECCHHHHHHHHH----c-CCeeecHHHH-HHHhCCCCEEEECCChhhh
Confidence 5899999 7999999999998775 466555 33321 111111 0 1000001111 223468999999998763
Q ss_pred hHHHHhhCCCCCEEEEcCCc
Q 015441 142 TQEIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 142 s~~~~~~l~~G~~VIDlSa~ 161 (406)
..+..+.+..|..|||+++.
T Consensus 224 ~~~~l~~~~~g~vIIDla~~ 243 (296)
T PRK08306 224 TKEVLSKMPPEALIIDLASK 243 (296)
T ss_pred hHHHHHcCCCCcEEEEEccC
Confidence 34455556778999999875
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.014 Score=56.39 Aligned_cols=102 Identities=15% Similarity=0.266 Sum_probs=58.1
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCC--CceEEEEeccCcCC-ccccccccCccccCCCcccccCcccCCCCCEEEEcCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHP--YFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLP 138 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp--~~elv~l~s~~~~G-~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~ 138 (406)
||+||+|+| .|.+|..+++.|.+.. ..++ .+.+++..- +.+...+ + +...... .+...++|+||+|++
T Consensus 1 ~mm~I~iIG-~G~mG~~la~~l~~~g~~~~~v-~v~~r~~~~~~~~~~~~----g--~~~~~~~-~~~~~~advVil~v~ 71 (267)
T PRK11880 1 MMKKIGFIG-GGNMASAIIGGLLASGVPAKDI-IVSDPSPEKRAALAEEY----G--VRAATDN-QEAAQEADVVVLAVK 71 (267)
T ss_pred CCCEEEEEe-chHHHHHHHHHHHhCCCCcceE-EEEcCCHHHHHHHHHhc----C--CeecCCh-HHHHhcCCEEEEEcC
Confidence 578999999 7999999999887532 2333 444443210 1111100 1 1101111 122357899999999
Q ss_pred CcchHHHHhhCC-C-CCEEEEcCCcccCCCccchhhhcC
Q 015441 139 HGTTQEIIKGLP-K-SLKIVDLSADFRLRDVSEYEEWYG 175 (406)
Q Consensus 139 ~~~s~~~~~~l~-~-G~~VIDlSa~fRl~~~~~~~~~y~ 175 (406)
.....++++.+. . +..||.+++... .+..++|++
T Consensus 72 ~~~~~~v~~~l~~~~~~~vvs~~~gi~---~~~l~~~~~ 107 (267)
T PRK11880 72 PQVMEEVLSELKGQLDKLVVSIAAGVT---LARLERLLG 107 (267)
T ss_pred HHHHHHHHHHHHhhcCCEEEEecCCCC---HHHHHHhcC
Confidence 887777776542 1 457787777542 233445543
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.029 Score=55.55 Aligned_cols=91 Identities=16% Similarity=0.234 Sum_probs=52.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCC-ceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPY-FGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~-~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
.||+|+| +|.+|+.+.+.|..... .++..+ +++.. ...... .. +......... .+...++|+||+|+|....
T Consensus 7 ~~I~IIG-~G~mG~sla~~l~~~g~~~~V~~~-dr~~~--~~~~a~-~~-g~~~~~~~~~-~~~~~~aDvViiavp~~~~ 79 (307)
T PRK07502 7 DRVALIG-IGLIGSSLARAIRRLGLAGEIVGA-DRSAE--TRARAR-EL-GLGDRVTTSA-AEAVKGADLVILCVPVGAS 79 (307)
T ss_pred cEEEEEe-eCHHHHHHHHHHHhcCCCcEEEEE-ECCHH--HHHHHH-hC-CCCceecCCH-HHHhcCCCEEEECCCHHHH
Confidence 5899999 99999999999886543 344433 43321 111100 00 1000001111 1234689999999998766
Q ss_pred HHHHh----hCCCCCEEEEcCCc
Q 015441 143 QEIIK----GLPKSLKIVDLSAD 161 (406)
Q Consensus 143 ~~~~~----~l~~G~~VIDlSa~ 161 (406)
.++.+ .+..+..|+|.++.
T Consensus 80 ~~v~~~l~~~l~~~~iv~dvgs~ 102 (307)
T PRK07502 80 GAVAAEIAPHLKPGAIVTDVGSV 102 (307)
T ss_pred HHHHHHHHhhCCCCCEEEeCccc
Confidence 55443 34567888998763
|
|
| >PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.016 Score=59.40 Aligned_cols=94 Identities=15% Similarity=0.328 Sum_probs=56.5
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCC-CceEEEEeccCcCC---ccccccccCcc----------------ccCCCccccc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHP-YFGIKLMTADRKAG---QSIGSVFPHLI----------------SQDLPTMVAV 122 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp-~~elv~l~s~~~~G---~~i~~v~p~l~----------------~~~~~~~~~~ 122 (406)
|.||+|+|+||-||+.-++.+.++| .+++++++..+... +...+..|.+. +.........
T Consensus 1 mk~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~ 80 (385)
T PRK05447 1 MKRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGE 80 (385)
T ss_pred CceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEECh
Confidence 4689999999999999999999887 68999998544322 11121122211 0000000000
Q ss_pred C--c--ccCCCCCEEEEcCCCcchHH-HHhhCCCCCEEE
Q 015441 123 K--D--ADFSNVDAVFCCLPHGTTQE-IIKGLPKSLKIV 156 (406)
Q Consensus 123 ~--~--~~~~~vDvVF~al~~~~s~~-~~~~l~~G~~VI 156 (406)
+ . ....++|+|+.+.+.....+ ...++++|+.|.
T Consensus 81 ~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~Va 119 (385)
T PRK05447 81 EGLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIA 119 (385)
T ss_pred hHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEE
Confidence 0 0 01246899999998654444 335568888776
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.021 Score=59.64 Aligned_cols=88 Identities=18% Similarity=0.345 Sum_probs=53.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
+||+|+|++|.+|+.+.+.|.+.. .++..+. ++. .......- + + ....... .+...++|+||+|+|....
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G-~~V~v~~-r~~~~~~~~a~~---~-g--v~~~~~~-~e~~~~aDvVIlavp~~~~ 71 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKG-FEVIVTG-RDPKKGKEVAKE---L-G--VEYANDN-IDAAKDADIVIISVPINVT 71 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCC-CEEEEEE-CChHHHHHHHHH---c-C--CeeccCH-HHHhccCCEEEEecCHHHH
Confidence 379999999999999999998643 3554443 321 10111100 0 1 0000011 1224678999999998776
Q ss_pred HHHHhh----CCCCCEEEEcCC
Q 015441 143 QEIIKG----LPKSLKIVDLSA 160 (406)
Q Consensus 143 ~~~~~~----l~~G~~VIDlSa 160 (406)
.+.++. +..++.|+|.++
T Consensus 72 ~~vl~~l~~~l~~~~iViDvsS 93 (437)
T PRK08655 72 EDVIKEVAPHVKEGSLLMDVTS 93 (437)
T ss_pred HHHHHHHHhhCCCCCEEEEccc
Confidence 665543 356889999987
|
|
| >COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.042 Score=53.73 Aligned_cols=44 Identities=23% Similarity=0.378 Sum_probs=36.7
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEecc--CcCCccccc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD--RKAGQSIGS 106 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~--~~~G~~i~~ 106 (406)
|.++|-+.| ||++|.+.+|.|..+|.++++....+ ...|+.+.+
T Consensus 1 m~~~vvqyG-tG~vGv~air~l~akpe~elvgawv~s~ak~Gkdlge 46 (350)
T COG3804 1 MSLRVVQYG-TGSVGVAAIRGLLAKPELELVGAWVHSAAKSGKDLGE 46 (350)
T ss_pred CCceeEEec-cchHHHHHHHHHHcCCCCceEEEEecCcccccccHHH
Confidence 568899999 99999999999999999999987654 345776665
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.017 Score=54.46 Aligned_cols=97 Identities=13% Similarity=0.155 Sum_probs=56.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCcccccccc----CccccCCC-cccccC-cccCCCCCEEEEcC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFP----HLISQDLP-TMVAVK-DADFSNVDAVFCCL 137 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p----~l~~~~~~-~~~~~~-~~~~~~vDvVF~al 137 (406)
+||+|+|++|.+|+.|.+.|.+.- .++... +++.. +...... .+...... .....+ .+...++|+||+|+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G-~~V~v~-~r~~~--~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilav 76 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG-NKIIIG-SRDLE--KAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAV 76 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC-CEEEEE-EcCHH--HHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEEC
Confidence 479999999999999999998653 455443 43321 1111000 00000000 011111 22346789999999
Q ss_pred CCcchHHHHhhC---CCCCEEEEcCCcccC
Q 015441 138 PHGTTQEIIKGL---PKSLKIVDLSADFRL 164 (406)
Q Consensus 138 ~~~~s~~~~~~l---~~G~~VIDlSa~fRl 164 (406)
+.....+.++.+ -.+..|||.+..+..
T Consensus 77 p~~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 77 PWDHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred CHHHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 988776665443 135789999887654
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.025 Score=56.66 Aligned_cols=33 Identities=27% Similarity=0.507 Sum_probs=27.5
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
++.+|+|.|||||||..+++.|+.+- .++++..
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rG-Y~V~gtV 37 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRG-YTVRGTV 37 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCC-CEEEEEE
Confidence 45789999999999999999999765 4566665
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.034 Score=48.74 Aligned_cols=92 Identities=13% Similarity=0.177 Sum_probs=51.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccCccccCCC-cccccCcccCCCCCEEEEcCCCcc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQDLP-TMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~l~~~~~~-~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
.+|+|+|+ |.+|+.+++.|..+...++ .+.+++. ..+.+.. .+...... ...+. .+...++|+|+.|+|...
T Consensus 20 ~~i~iiG~-G~~g~~~a~~l~~~g~~~v-~v~~r~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~Dvvi~~~~~~~ 93 (155)
T cd01065 20 KKVLILGA-GGAARAVAYALAELGAAKI-VIVNRTLEKAKALAE---RFGELGIAIAYLDL-EELLAEADLIINTTPVGM 93 (155)
T ss_pred CEEEEECC-cHHHHHHHHHHHHCCCCEE-EEEcCCHHHHHHHHH---HHhhcccceeecch-hhccccCCEEEeCcCCCC
Confidence 58999995 9999999999987642334 4444332 1111111 01100000 01111 122468999999999876
Q ss_pred h----HHHHh-hCCCCCEEEEcCCc
Q 015441 142 T----QEIIK-GLPKSLKIVDLSAD 161 (406)
Q Consensus 142 s----~~~~~-~l~~G~~VIDlSa~ 161 (406)
- ..+.+ .+..|..|+|++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~v~D~~~~ 118 (155)
T cd01065 94 KPGDELPLPPSLLKPGGVVYDVVYN 118 (155)
T ss_pred CCCCCCCCCHHHcCCCCEEEEcCcC
Confidence 3 11222 24678899999763
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.063 Score=56.14 Aligned_cols=33 Identities=21% Similarity=0.435 Sum_probs=26.8
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+.+||.|.||||++|+.|++.|.+.. .+++.+.
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G-~~V~~ld 150 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARG-DSVIVVD 150 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCc-CEEEEEe
Confidence 34689999999999999999998763 4666653
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.033 Score=55.58 Aligned_cols=98 Identities=19% Similarity=0.354 Sum_probs=56.9
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCcccccccc---CccccCCCc-cccc-Cc-ccCCCCCEEEEc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFP---HLISQDLPT-MVAV-KD-ADFSNVDAVFCC 136 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p---~l~~~~~~~-~~~~-~~-~~~~~vDvVF~a 136 (406)
++||+|+| .|..|..+...|.... .++..+..+...-+.+..... .+.+..++. +... +. +...++|+||+|
T Consensus 4 ~m~I~iIG-~G~mG~~ia~~L~~~G-~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~ 81 (328)
T PRK14618 4 GMRVAVLG-AGAWGTALAVLAASKG-VPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVA 81 (328)
T ss_pred CCeEEEEC-cCHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEE
Confidence 45999999 9999999999998543 355444322111111111100 001111110 1111 11 223579999999
Q ss_pred CCCcchHHHHhhCCCCCEEEEcCCcc
Q 015441 137 LPHGTTQEIIKGLPKSLKIVDLSADF 162 (406)
Q Consensus 137 l~~~~s~~~~~~l~~G~~VIDlSa~f 162 (406)
++.....+..+.+..+..+||.+.-+
T Consensus 82 v~~~~~~~v~~~l~~~~~vi~~~~Gi 107 (328)
T PRK14618 82 VPSKALRETLAGLPRALGYVSCAKGL 107 (328)
T ss_pred CchHHHHHHHHhcCcCCEEEEEeecc
Confidence 99987777777777778889887643
|
|
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.051 Score=54.66 Aligned_cols=93 Identities=15% Similarity=0.338 Sum_probs=52.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcC-------CCceEEEEeccCc-----CCccccccccCccccCCC--cccccCcccC--
Q 015441 64 VRIGLLGASGYTGAEIVRLLANH-------PYFGIKLMTADRK-----AGQSIGSVFPHLISQDLP--TMVAVKDADF-- 127 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~h-------p~~elv~l~s~~~-----~G~~i~~v~p~l~~~~~~--~~~~~~~~~~-- 127 (406)
+||+|+| .|-||+.++++|.++ ..++++++++++. .|-.++..........+. .....+.+++
T Consensus 1 mrVaIiG-fG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~ 79 (326)
T PRK06392 1 IRISIIG-LGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFE 79 (326)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhc
Confidence 4899999 999999999999864 4678888876442 121111100000000000 0000111111
Q ss_pred CCCCEEEEcCCCcc----hHHHH-hhCCCCCEEEE
Q 015441 128 SNVDAVFCCLPHGT----TQEII-KGLPKSLKIVD 157 (406)
Q Consensus 128 ~~vDvVF~al~~~~----s~~~~-~~l~~G~~VID 157 (406)
.+.|+++.|++... ...+. +++++|+.||-
T Consensus 80 ~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVT 114 (326)
T PRK06392 80 IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVT 114 (326)
T ss_pred CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEc
Confidence 36899999997432 23333 45689999883
|
|
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.062 Score=56.07 Aligned_cols=32 Identities=22% Similarity=0.455 Sum_probs=26.5
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+||.|.||||+||+.|++.|.+.. .+++.+.
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G-~~V~~ld 151 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRG-DEVIVID 151 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCC-CEEEEEe
Confidence 3689999999999999999888653 4777664
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.024 Score=55.51 Aligned_cols=163 Identities=12% Similarity=0.173 Sum_probs=85.6
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCC---CceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHP---YFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLP 138 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp---~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~ 138 (406)
|.+||+++| .|.+|+.+++-|.+.. ..++. +.+++. . +.......+ + .....+. .+...++|+||+|++
T Consensus 1 ~~~~IgfIG-~G~MG~aia~~L~~~g~~~~~~I~-v~~r~~-~-~~~~l~~~~-g--~~~~~~~-~e~~~~aDiIiLavk 72 (272)
T PRK12491 1 MNKQIGFIG-CGNMGIAMIGGMINKNIVSPDQII-CSDLNV-S-NLKNASDKY-G--ITITTNN-NEVANSADILILSIK 72 (272)
T ss_pred CCCeEEEEC-ccHHHHHHHHHHHHCCCCCCceEE-EECCCH-H-HHHHHHHhc-C--cEEeCCc-HHHHhhCCEEEEEeC
Confidence 345899999 9999999999887532 23443 333321 1 111110001 1 1101111 122357899999999
Q ss_pred CcchHHHHhh----CCCCCEEEEcCCcccCCCccchhhhcCCC----CCCccchhhhhccccccchhhccCCc-EEecCC
Q 015441 139 HGTTQEIIKG----LPKSLKIVDLSADFRLRDVSEYEEWYGQP----HIAPDLQKEAVYGLTEISREDIKNAR-LVANPG 209 (406)
Q Consensus 139 ~~~s~~~~~~----l~~G~~VIDlSa~fRl~~~~~~~~~y~~~----~~~Pevn~~~vyglpE~~~~~i~~~~-iVanPg 209 (406)
+....++++. +..+..|||.-+-..++. .++|.+.. .+.|-.....-. +-. +..+++
T Consensus 73 P~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~---l~~~l~~~~~vvR~MPN~~~~vg~-----------g~t~~~~~~~ 138 (272)
T PRK12491 73 PDLYSSVINQIKDQIKNDVIVVTIAAGKSIKS---TENEFDRKLKVIRVMPNTPVLVGE-----------GMSALCFNEM 138 (272)
T ss_pred hHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHH---HHHhcCCCCcEEEECCChHHHHcC-----------ceEEEEeCCC
Confidence 8777776654 335678999888765544 56676432 233533322211 122 334455
Q ss_pred ChHHHHHHHHHHHHHc-cC-CCcceEEEEEeeccCccCcc
Q 015441 210 CYPTSIQLPLVPLIQA-NL-IQYRNIIIDAKSGVSGAGRG 247 (406)
Q Consensus 210 C~tta~~l~L~PL~~~-~l-~~i~~i~v~t~~gvSGaG~~ 247 (406)
+...-... +.-|++. |. +.++.=.+++.+++||.|-.
T Consensus 139 ~~~~~~~~-v~~lf~~~G~~~~~~E~~~d~~talsgsgPA 177 (272)
T PRK12491 139 VTEKDIKE-VLNIFNIFGQTEVVNEKLMDVVTSISGSSPA 177 (272)
T ss_pred CCHHHHHH-HHHHHHcCCCEEEEcHHHhhhHHHhccCcHH
Confidence 54332222 2233332 11 11222246888999999743
|
|
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.038 Score=55.79 Aligned_cols=87 Identities=13% Similarity=0.233 Sum_probs=53.9
Q ss_pred ccEEEEECcccHHHH-HHHHHHHc-CCCceEEEEeccCcCCccccccccCccccCCCcccccCcccC--CCCCEEEEcCC
Q 015441 63 QVRIGLLGASGYTGA-EIVRLLAN-HPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCLP 138 (406)
Q Consensus 63 ~ikVaIvGATG~vG~-eLlrlL~~-hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~al~ 138 (406)
|+||||+| .|.+++ ..++.+.. .+.++++++.++...-......++. ...+.+. ++.+ .++|+|+.|+|
T Consensus 1 ~irvgiiG-~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~-----~~~~~~~-~ell~~~~iD~V~I~tp 73 (344)
T PRK10206 1 VINCAFIG-FGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSH-----IHFTSDL-DEVLNDPDVKLVVVCTH 73 (344)
T ss_pred CeEEEEEC-CCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCC-----CcccCCH-HHHhcCCCCCEEEEeCC
Confidence 58999999 888765 34675644 5789999999864311111111211 1111111 1112 37899999999
Q ss_pred CcchHHHHhh-CCCCCEEE
Q 015441 139 HGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 139 ~~~s~~~~~~-l~~G~~VI 156 (406)
+..=.+++.+ +++|+.|+
T Consensus 74 ~~~H~~~~~~al~aGkhVl 92 (344)
T PRK10206 74 ADSHFEYAKRALEAGKNVL 92 (344)
T ss_pred chHHHHHHHHHHHcCCcEE
Confidence 8877777754 68888766
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.046 Score=53.36 Aligned_cols=162 Identities=13% Similarity=0.178 Sum_probs=84.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCC---CceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHP---YFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp---~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
+||+++| .|..|+.+++.|.+.. ..++.. .+++. .+........+ + .....+. .+...++|+||+|++..
T Consensus 4 mkI~~IG-~G~mG~aia~~l~~~g~~~~~~v~v-~~r~~-~~~~~~l~~~~-g--~~~~~~~-~e~~~~aDvVilav~p~ 76 (279)
T PRK07679 4 QNISFLG-AGSIAEAIIGGLLHANVVKGEQITV-SNRSN-ETRLQELHQKY-G--VKGTHNK-KELLTDANILFLAMKPK 76 (279)
T ss_pred CEEEEEC-ccHHHHHHHHHHHHCCCCCcceEEE-ECCCC-HHHHHHHHHhc-C--ceEeCCH-HHHHhcCCEEEEEeCHH
Confidence 4899999 9999999999888653 234433 33322 11111110000 1 1001111 11235789999999988
Q ss_pred chHHHHhhC----CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCc-EEecCCChHHHH
Q 015441 141 TTQEIIKGL----PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNAR-LVANPGCYPTSI 215 (406)
Q Consensus 141 ~s~~~~~~l----~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~-iVanPgC~tta~ 215 (406)
...+.++.+ ..+..|||+.+-... +..++|.+.. . ..+.++|=.....-.+-. ++.+..|....
T Consensus 77 ~~~~vl~~l~~~~~~~~liIs~~aGi~~---~~l~~~~~~~--~-----~v~r~mPn~~~~~~~~~t~~~~~~~~~~~~- 145 (279)
T PRK07679 77 DVAEALIPFKEYIHNNQLIISLLAGVST---HSIRNLLQKD--V-----PIIRAMPNTSAAILKSATAISPSKHATAEH- 145 (279)
T ss_pred HHHHHHHHHHhhcCCCCEEEEECCCCCH---HHHHHHcCCC--C-----eEEEECCCHHHHHhcccEEEeeCCCCCHHH-
Confidence 877766443 356789997554433 3344554321 0 112222211111112223 33455554333
Q ss_pred HHHHHHHHHccCCCcceEEE------EEeeccCccCcc
Q 015441 216 QLPLVPLIQANLIQYRNIII------DAKSGVSGAGRG 247 (406)
Q Consensus 216 ~l~L~PL~~~~l~~i~~i~v------~t~~gvSGaG~~ 247 (406)
.-.+.+|++. ++. .++ ++..+.+|+|..
T Consensus 146 ~~~v~~l~~~--~G~--~~~v~e~~~~~~~a~~Gsgpa 179 (279)
T PRK07679 146 IQTAKALFET--IGL--VSVVEEEDMHAVTALSGSGPA 179 (279)
T ss_pred HHHHHHHHHh--CCc--EEEeCHHHhhhHHHhhcCHHH
Confidence 3467788876 552 333 667888888765
|
|
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.039 Score=55.71 Aligned_cols=94 Identities=13% Similarity=0.163 Sum_probs=55.4
Q ss_pred CccEEEEECcccHHHHHHHHHHHcC---------CCceEEEEeccCc-----CCccccccccCcc--c--cCCC---ccc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANH---------PYFGIKLMTADRK-----AGQSIGSVFPHLI--S--QDLP---TMV 120 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~h---------p~~elv~l~s~~~-----~G~~i~~v~p~l~--~--~~~~---~~~ 120 (406)
|++||+|+| .|-||+.++++|.++ -+++++++++++. .|-.+........ + ..++ ...
T Consensus 1 ~~i~VaIiG-~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~ 79 (336)
T PRK08374 1 MEVKVSIFG-FGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVY 79 (336)
T ss_pred CeeEEEEEC-CCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhcccccccc
Confidence 568999999 999999999998752 1367888876431 1211111000000 0 0000 000
Q ss_pred ccCccc-C--CCCCEEEEcCCCcchHHHHhh-CCCCCEEE
Q 015441 121 AVKDAD-F--SNVDAVFCCLPHGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 121 ~~~~~~-~--~~vDvVF~al~~~~s~~~~~~-l~~G~~VI 156 (406)
..+.++ + .++|+++.|++...+.++... +.+|+.||
T Consensus 80 ~~~~~ell~~~~~DVvVd~t~~~~a~~~~~~al~~G~~VV 119 (336)
T PRK08374 80 NFSPEEIVEEIDADIVVDVTNDKNAHEWHLEALKEGKSVV 119 (336)
T ss_pred CCCHHHHHhcCCCCEEEECCCcHHHHHHHHHHHhhCCcEE
Confidence 111112 2 368999999988777777665 58898887
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.046 Score=51.45 Aligned_cols=88 Identities=15% Similarity=0.258 Sum_probs=53.3
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCc--cc-cccccCccccCCCcccccC-cccCCCCCEEEEcCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQ--SI-GSVFPHLISQDLPTMVAVK-DADFSNVDAVFCCLP 138 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~--~i-~~v~p~l~~~~~~~~~~~~-~~~~~~vDvVF~al~ 138 (406)
|++++|+| ||.+|..|.+.|..-- .|++.- +++...+ .. ....|. +...+ ++....+|+||++.|
T Consensus 1 m~~~~i~G-tGniG~alA~~~a~ag-~eV~ig-s~r~~~~~~a~a~~l~~~--------i~~~~~~dA~~~aDVVvLAVP 69 (211)
T COG2085 1 MMIIAIIG-TGNIGSALALRLAKAG-HEVIIG-SSRGPKALAAAAAALGPL--------ITGGSNEDAAALADVVVLAVP 69 (211)
T ss_pred CcEEEEec-cChHHHHHHHHHHhCC-CeEEEe-cCCChhHHHHHHHhhccc--------cccCChHHHHhcCCEEEEecc
Confidence 56788888 9999999999998532 355444 3333211 00 111111 11111 223457999999999
Q ss_pred CcchHHHHhhC---CCCCEEEEcCCc
Q 015441 139 HGTTQEIIKGL---PKSLKIVDLSAD 161 (406)
Q Consensus 139 ~~~s~~~~~~l---~~G~~VIDlSa~ 161 (406)
-..-....+.+ ..|+.|||.+.+
T Consensus 70 ~~a~~~v~~~l~~~~~~KIvID~tnp 95 (211)
T COG2085 70 FEAIPDVLAELRDALGGKIVIDATNP 95 (211)
T ss_pred HHHHHhHHHHHHHHhCCeEEEecCCC
Confidence 76666666554 237899998775
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.056 Score=56.07 Aligned_cols=94 Identities=20% Similarity=0.188 Sum_probs=51.9
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc------CCccccccccCcccc-----CCCcccccCcccCCCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK------AGQSIGSVFPHLISQ-----DLPTMVAVKDADFSNVD 131 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~------~G~~i~~v~p~l~~~-----~~~~~~~~~~~~~~~vD 131 (406)
++||+|+| .||+|..+...|.++. .++..+..... .|. +....|.+... ..-.... ..+..++|
T Consensus 3 ~~kI~VIG-lG~~G~~~A~~La~~G-~~V~~~D~~~~~v~~l~~g~-~~~~e~~l~~~l~~~~~~g~l~~--~~~~~~aD 77 (415)
T PRK11064 3 FETISVIG-LGYIGLPTAAAFASRQ-KQVIGVDINQHAVDTINRGE-IHIVEPDLDMVVKTAVEGGYLRA--TTTPEPAD 77 (415)
T ss_pred ccEEEEEC-cchhhHHHHHHHHhCC-CEEEEEeCCHHHHHHHHCCC-CCcCCCCHHHHHHHHhhcCceee--ecccccCC
Confidence 36899999 9999999999998753 46655532111 011 01011111000 0000000 01234799
Q ss_pred EEEEcCCCcc---------h-----HHHHhhCCCCCEEEEcCCc
Q 015441 132 AVFCCLPHGT---------T-----QEIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 132 vVF~al~~~~---------s-----~~~~~~l~~G~~VIDlSa~ 161 (406)
++|.|+|... . ..+.+.+..|..||+.|.-
T Consensus 78 vvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv 121 (415)
T PRK11064 78 AFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTS 121 (415)
T ss_pred EEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCC
Confidence 9999999752 1 2223345678899988874
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.031 Score=53.06 Aligned_cols=102 Identities=17% Similarity=0.279 Sum_probs=58.6
Q ss_pred ccEEEEECcccHHHHHHHHHHHcC--CCceEEEEeccCcC--CccccccccCccccCCCcccccCcccCCCCCEEEEcCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANH--PYFGIKLMTADRKA--GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLP 138 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~h--p~~elv~l~s~~~~--G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~ 138 (406)
.+||+|+| +|.+|+.+++.|..+ ...+.+.+.+++.. .+.+..-+ ......+. .+.+.++|+||.|+|
T Consensus 4 ~~kI~iIG-~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~DiViiavp 75 (245)
T PRK07634 4 KHRILFIG-AGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY------NVSTTTDW-KQHVTSVDTIVLAMP 75 (245)
T ss_pred CCeEEEEC-cCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHc------CcEEeCCh-HHHHhcCCEEEEecC
Confidence 36899999 899999999988754 33442233333221 11111101 11111111 122467999999999
Q ss_pred CcchHHHHhhCC---CCCEEEEcCCcccCCCccchhhhcC
Q 015441 139 HGTTQEIIKGLP---KSLKIVDLSADFRLRDVSEYEEWYG 175 (406)
Q Consensus 139 ~~~s~~~~~~l~---~G~~VIDlSa~fRl~~~~~~~~~y~ 175 (406)
...-.++++.+. .+..||+.++-...+ ..++|.+
T Consensus 76 ~~~~~~v~~~l~~~~~~~~vis~~~gi~~~---~l~~~~~ 112 (245)
T PRK07634 76 PSAHEELLAELSPLLSNQLVVTVAAGIGPS---YLEERLP 112 (245)
T ss_pred HHHHHHHHHHHHhhccCCEEEEECCCCCHH---HHHHHcC
Confidence 887777665431 356788888876433 3555543
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.047 Score=53.16 Aligned_cols=88 Identities=18% Similarity=0.357 Sum_probs=51.8
Q ss_pred EEEEECcccHHHHHHHHHHHcCCC-ceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPY-FGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~-~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
||+|+| .|.+|+.+.+.|.+... .++..+ +++.. ...... .. +. ..... +..+..++|+||+|+|.....
T Consensus 2 ~I~iIG-~G~mG~sla~~l~~~g~~~~v~~~-d~~~~--~~~~~~-~~-g~-~~~~~--~~~~~~~aD~Vilavp~~~~~ 72 (275)
T PRK08507 2 KIGIIG-LGLMGGSLGLALKEKGLISKVYGY-DHNEL--HLKKAL-EL-GL-VDEIV--SFEELKKCDVIFLAIPVDAII 72 (275)
T ss_pred EEEEEc-cCHHHHHHHHHHHhcCCCCEEEEE-cCCHH--HHHHHH-HC-CC-CcccC--CHHHHhcCCEEEEeCcHHHHH
Confidence 799999 89999999999885432 344443 33221 111100 00 00 00011 111233589999999988777
Q ss_pred HHHhh---CCCCCEEEEcCCc
Q 015441 144 EIIKG---LPKSLKIVDLSAD 161 (406)
Q Consensus 144 ~~~~~---l~~G~~VIDlSa~ 161 (406)
+.++. +..+..|+|.++.
T Consensus 73 ~~~~~l~~l~~~~iv~d~gs~ 93 (275)
T PRK08507 73 EILPKLLDIKENTTIIDLGST 93 (275)
T ss_pred HHHHHHhccCCCCEEEECccc
Confidence 76654 3457889998763
|
|
| >PRK06813 homoserine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.056 Score=54.81 Aligned_cols=94 Identities=17% Similarity=0.201 Sum_probs=53.0
Q ss_pred CccEEEEECcccHHHHHHHHHHHcC---------CCceEEEEeccCcC-----CccccccccCccc-cCCCcccccCccc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANH---------PYFGIKLMTADRKA-----GQSIGSVFPHLIS-QDLPTMVAVKDAD 126 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~h---------p~~elv~l~s~~~~-----G~~i~~v~p~l~~-~~~~~~~~~~~~~ 126 (406)
|+++|+|+| .|-||+.++++|.++ -+++++.+++++.. |-.+......-.. .++..+...+.++
T Consensus 1 ~~i~I~liG-~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~ 79 (346)
T PRK06813 1 MKIKVVLSG-YGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEE 79 (346)
T ss_pred CeeEEEEEe-cChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHH
Confidence 468999999 999999999999742 24677777654321 2111110000000 0000001111111
Q ss_pred -C---CCCCEEEEcCCCc-----chHHHHh-hCCCCCEEE
Q 015441 127 -F---SNVDAVFCCLPHG-----TTQEIIK-GLPKSLKIV 156 (406)
Q Consensus 127 -~---~~vDvVF~al~~~-----~s~~~~~-~l~~G~~VI 156 (406)
+ .+.|+|+.|+++. .+..+.+ ++++|+.||
T Consensus 80 ~~~~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVV 119 (346)
T PRK06813 80 RATDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIV 119 (346)
T ss_pred HhcCCCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEE
Confidence 1 2579999998753 4566654 568999999
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.11 Score=51.99 Aligned_cols=84 Identities=23% Similarity=0.396 Sum_probs=51.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|+|+| .|.+|+++.+.|..+ .+++.++...+.....+.. .....++ ++.+.++|+|++++|.....
T Consensus 137 ~tvgIvG-~G~IG~~vA~~l~af-G~~V~~~~~~~~~~~~~~~---------~~~~~~l-~e~l~~aDvvv~~lPlt~~T 204 (312)
T PRK15469 137 FTIGILG-AGVLGSKVAQSLQTW-GFPLRCWSRSRKSWPGVQS---------FAGREEL-SAFLSQTRVLINLLPNTPET 204 (312)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEeCCCCCCCCcee---------ecccccH-HHHHhcCCEEEECCCCCHHH
Confidence 5899999 999999999999866 3677666422111000110 0001111 23357899999999966553
Q ss_pred H-H-----HhhCCCCCEEEEcC
Q 015441 144 E-I-----IKGLPKSLKIVDLS 159 (406)
Q Consensus 144 ~-~-----~~~l~~G~~VIDlS 159 (406)
+ + ..+++.|..+|+.+
T Consensus 205 ~~li~~~~l~~mk~ga~lIN~a 226 (312)
T PRK15469 205 VGIINQQLLEQLPDGAYLLNLA 226 (312)
T ss_pred HHHhHHHHHhcCCCCcEEEECC
Confidence 2 2 23346688889655
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.028 Score=53.38 Aligned_cols=33 Identities=24% Similarity=0.464 Sum_probs=27.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEecc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD 97 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~ 97 (406)
++|.|.||||++|+.+++.|..+ ..++++++.+
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~-~~~v~~~~r~ 33 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLAR-GHEVRAAVRN 33 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhC-CCEEEEEEeC
Confidence 47999999999999999999987 5677777643
|
|
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.027 Score=55.30 Aligned_cols=86 Identities=21% Similarity=0.394 Sum_probs=46.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccC--CCCCEEEEcCCCcc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCLPHGT 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~al~~~~ 141 (406)
|||.|+||+|++|+.|.+.|... ..+++.. ++. .+ ++.....+. ..+ .+.|+|+.|+.-.-
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~-~~~v~~~-~r~----~~----------dl~d~~~~~-~~~~~~~pd~Vin~aa~~~ 63 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKER-GYEVIAT-SRS----DL----------DLTDPEAVA-KLLEAFKPDVVINCAAYTN 63 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTT-SEEEEEE-STT----CS-----------TTSHHHHH-HHHHHH--SEEEE------
T ss_pred CEEEEECCCCHHHHHHHHHHhhC-CCEEEEe-Cch----hc----------CCCCHHHHH-HHHHHhCCCeEeccceeec
Confidence 68999999999999999999863 4566666 332 11 111111110 011 25699999975311
Q ss_pred ----------h--------HHHHhhC-CCCCEEEEcCCcccCCC
Q 015441 142 ----------T--------QEIIKGL-PKSLKIVDLSADFRLRD 166 (406)
Q Consensus 142 ----------s--------~~~~~~l-~~G~~VIDlSa~fRl~~ 166 (406)
+ ..+++.+ ..|+++|=+|+++=++.
T Consensus 64 ~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~STd~VFdG 107 (286)
T PF04321_consen 64 VDACEKNPEEAYAINVDATKNLAEACKERGARLIHISTDYVFDG 107 (286)
T ss_dssp HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEGGGS-S
T ss_pred HHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEeeccEEEcC
Confidence 1 1122333 36889999999976654
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.043 Score=53.59 Aligned_cols=31 Identities=26% Similarity=0.596 Sum_probs=25.9
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEec
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTA 96 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s 96 (406)
+|.|.||+|++|+.|++.|.++. .+++.+..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g-~~V~~~~r 32 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQG-EEVRVLVR 32 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCC-CEEEEEEe
Confidence 79999999999999999998765 46666653
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.023 Score=46.63 Aligned_cols=84 Identities=21% Similarity=0.346 Sum_probs=51.3
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEecc--CcCCccccccccCccccCCCcccccC--cccCCCCCEEEEcC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD--RKAGQSIGSVFPHLISQDLPTMVAVK--DADFSNVDAVFCCL 137 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~--~~~G~~i~~v~p~l~~~~~~~~~~~~--~~~~~~vDvVF~al 137 (406)
+..||+|+||++. |+.++..+.....+++..+.+. +..|+.+.. ++.+..++ .+.. ++|+.++|.
T Consensus 2 k~~~v~ivGag~~-G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~g---------ipV~~~~~~l~~~~-~i~iaii~V 70 (96)
T PF02629_consen 2 KKTNVIIVGAGNL-GRALLYNGFSMRGFGIVAVFDVDPEKIGKEIGG---------IPVYGSMDELEEFI-EIDIAIITV 70 (96)
T ss_dssp TTEEEEEETTTSH-HHHHHHHHHHHHCECEEEEEEECTTTTTSEETT---------EEEESSHHHHHHHC-TTSEEEEES
T ss_pred CCCeEEEECCCCc-HHHHHHhHHHHcCCCCEEEEEcCCCccCcEECC---------EEeeccHHHhhhhh-CCCEEEEEc
Confidence 4579999996655 7766654544456788777753 344554441 22221111 1122 489999999
Q ss_pred CCcchHHHHhhC-CCCCEEE
Q 015441 138 PHGTTQEIIKGL-PKSLKIV 156 (406)
Q Consensus 138 ~~~~s~~~~~~l-~~G~~VI 156 (406)
|...+++.+..+ ++|++-|
T Consensus 71 P~~~a~~~~~~~~~~gIk~i 90 (96)
T PF02629_consen 71 PAEAAQEVADELVEAGIKGI 90 (96)
T ss_dssp -HHHHHHHHHHHHHTT-SEE
T ss_pred CHHHHHHHHHHHHHcCCCEE
Confidence 999888887654 7887644
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.066 Score=52.28 Aligned_cols=33 Identities=27% Similarity=0.448 Sum_probs=25.7
Q ss_pred EEEECcccHHHHHHHHHHHcCCCceEEEEeccCc
Q 015441 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK 99 (406)
Q Consensus 66 VaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~ 99 (406)
|.|.||||++|+.|++.|.++. .+++.+.++..
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g-~~~v~~~~~~~ 34 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKG-ITDILVVDNLK 34 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCC-CceEEEecCCC
Confidence 7899999999999999998764 45556655433
|
|
| >PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms [] | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.058 Score=47.07 Aligned_cols=34 Identities=26% Similarity=0.633 Sum_probs=30.4
Q ss_pred EEEECcccHHHHHHHHHHHcCC-CceEEEEeccCc
Q 015441 66 IGLLGASGYTGAEIVRLLANHP-YFGIKLMTADRK 99 (406)
Q Consensus 66 VaIvGATG~vG~eLlrlL~~hp-~~elv~l~s~~~ 99 (406)
|+|+|+||-||++.++.+.+|| .+++++++..++
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~~n 35 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAGSN 35 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESST
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcCCC
Confidence 6899999999999999999998 689999987544
|
In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A .... |
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.052 Score=53.56 Aligned_cols=89 Identities=16% Similarity=0.357 Sum_probs=52.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.||+|+| .|.+|..+.+.|.++. .++... +++.. +... +........... .+...++|+||+|+|....
T Consensus 2 ~~Ig~IG-lG~mG~~mA~~l~~~G-~~V~v~-d~~~~--~~~~----~~~~g~~~~~s~-~~~~~~aDvVi~~vp~~~~~ 71 (296)
T PRK15461 2 AAIAFIG-LGQMGSPMASNLLKQG-HQLQVF-DVNPQ--AVDA----LVDKGATPAASP-AQAAAGAEFVITMLPNGDLV 71 (296)
T ss_pred CeEEEEe-eCHHHHHHHHHHHHCC-CeEEEE-cCCHH--HHHH----HHHcCCcccCCH-HHHHhcCCEEEEecCCHHHH
Confidence 4899999 9999999999998664 355433 43221 1111 000001001111 1223678999999998753
Q ss_pred HHHH-------hhCCCCCEEEEcCCcc
Q 015441 143 QEII-------KGLPKSLKIVDLSADF 162 (406)
Q Consensus 143 ~~~~-------~~l~~G~~VIDlSa~f 162 (406)
.+.. +.+..|..+||.|.-.
T Consensus 72 ~~vl~~~~~i~~~l~~g~lvid~sT~~ 98 (296)
T PRK15461 72 RSVLFGENGVCEGLSRDALVIDMSTIH 98 (296)
T ss_pred HHHHcCcccHhhcCCCCCEEEECCCCC
Confidence 3332 1234678899998754
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.075 Score=53.42 Aligned_cols=77 Identities=19% Similarity=0.238 Sum_probs=43.4
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCc------eEEEEeccC----cCCccccccccCcc-ccCCCcccccCcccCCCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYF------GIKLMTADR----KAGQSIGSVFPHLI-SQDLPTMVAVKDADFSNV 130 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~------elv~l~s~~----~~G~~i~~v~p~l~-~~~~~~~~~~~~~~~~~v 130 (406)
+..||+|+||+|.||..++-.|...+-+ |++.+--.. ..|..++-.|-... ..... +..-+.+++.++
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~-i~~~~~~~~~da 80 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVV-ATTDPEEAFKDV 80 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcE-EecChHHHhCCC
Confidence 3579999999999999999988754433 676663211 23433332221100 00111 111123456788
Q ss_pred CEEEEcCCC
Q 015441 131 DAVFCCLPH 139 (406)
Q Consensus 131 DvVF~al~~ 139 (406)
|+|+.+.+.
T Consensus 81 DvVVitAG~ 89 (323)
T TIGR01759 81 DAALLVGAF 89 (323)
T ss_pred CEEEEeCCC
Confidence 888887764
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.08 Score=52.30 Aligned_cols=90 Identities=21% Similarity=0.351 Sum_probs=53.1
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
||+|+| .|..|..+.+.|.++ ..++... +++.. -+.+.. ..........++ .+...++|+||+|+|.....
T Consensus 2 ~Ig~IG-lG~mG~~la~~L~~~-g~~V~~~-dr~~~~~~~l~~----~g~~~~~s~~~~-~~~~~~~dvIi~~vp~~~~~ 73 (298)
T TIGR00872 2 QLGLIG-LGRMGANIVRRLAKR-GHDCVGY-DHDQDAVKAMKE----DRTTGVANLREL-SQRLSAPRVVWVMVPHGIVD 73 (298)
T ss_pred EEEEEc-chHHHHHHHHHHHHC-CCEEEEE-ECCHHHHHHHHH----cCCcccCCHHHH-HhhcCCCCEEEEEcCchHHH
Confidence 799999 899999999998865 3566544 33221 111111 000000001111 11234689999999998555
Q ss_pred HHHh----hCCCCCEEEEcCCcc
Q 015441 144 EIIK----GLPKSLKIVDLSADF 162 (406)
Q Consensus 144 ~~~~----~l~~G~~VIDlSa~f 162 (406)
+.+. .+..|..|||.|...
T Consensus 74 ~v~~~l~~~l~~g~ivid~st~~ 96 (298)
T TIGR00872 74 AVLEELAPTLEKGDIVIDGGNSY 96 (298)
T ss_pred HHHHHHHhhCCCCCEEEECCCCC
Confidence 5443 346788999998764
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.04 Score=53.10 Aligned_cols=101 Identities=19% Similarity=0.352 Sum_probs=58.3
Q ss_pred EEEEECcccHHHHHHHHHHHcCC-CceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 65 RIGLLGASGYTGAEIVRLLANHP-YFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp-~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
||+|+| +|.+|+.+++.|.+.. ..+.+.+.+++.. -+.+...++ + .....+. .+...++|+||+|++....
T Consensus 2 ~IgiIG-~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~---~--~~~~~~~-~~~~~~aDvVilav~p~~~ 74 (258)
T PRK06476 2 KIGFIG-TGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFP---K--VRIAKDN-QAVVDRSDVVFLAVRPQIA 74 (258)
T ss_pred eEEEEC-cCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcC---C--ceEeCCH-HHHHHhCCEEEEEeCHHHH
Confidence 799999 9999999999887542 2233344443221 011111110 0 1001111 1123578999999998766
Q ss_pred HHHHhhC--CCCCEEEEcCCcccCCCccchhhhcC
Q 015441 143 QEIIKGL--PKSLKIVDLSADFRLRDVSEYEEWYG 175 (406)
Q Consensus 143 ~~~~~~l--~~G~~VIDlSa~fRl~~~~~~~~~y~ 175 (406)
.++++.+ ..|..||+.++.... +.+++|.+
T Consensus 75 ~~vl~~l~~~~~~~vis~~ag~~~---~~l~~~~~ 106 (258)
T PRK06476 75 EEVLRALRFRPGQTVISVIAATDR---AALLEWIG 106 (258)
T ss_pred HHHHHHhccCCCCEEEEECCCCCH---HHHHHHhC
Confidence 6766554 457788988877543 34555543
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.075 Score=53.48 Aligned_cols=78 Identities=14% Similarity=0.162 Sum_probs=44.5
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCC------CceEEEEeccC----cCCccccccccCcc-ccCCCcccccCcccCCC
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHP------YFGIKLMTADR----KAGQSIGSVFPHLI-SQDLPTMVAVKDADFSN 129 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp------~~elv~l~s~~----~~G~~i~~v~p~l~-~~~~~~~~~~~~~~~~~ 129 (406)
.++.||+|+||+|.||..++-.|.... ..|++.+--.. ..|..++-.|.... .... .+..-+.+++.+
T Consensus 2 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~-~i~~~~y~~~~d 80 (326)
T PRK05442 2 KAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGV-VITDDPNVAFKD 80 (326)
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCc-EEecChHHHhCC
Confidence 345799999999999999988776422 23676664321 23443332221100 0011 111112345689
Q ss_pred CCEEEEcCCC
Q 015441 130 VDAVFCCLPH 139 (406)
Q Consensus 130 vDvVF~al~~ 139 (406)
+|+|+.+.+.
T Consensus 81 aDiVVitaG~ 90 (326)
T PRK05442 81 ADVALLVGAR 90 (326)
T ss_pred CCEEEEeCCC
Confidence 9999888773
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.11 Score=52.16 Aligned_cols=75 Identities=19% Similarity=0.292 Sum_probs=43.6
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccCcCCccccccccCccccCCCccccc-C----cccCCCCCEEE
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRKAGQSIGSVFPHLISQDLPTMVAV-K----DADFSNVDAVF 134 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~-~----~~~~~~vDvVF 134 (406)
.+|.||+|+||.|.||..+...|...... |++.+--....|+..+-.|-. . .. .+... + .+++.++|+|+
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~--~-~~-~v~~~td~~~~~~~l~gaDvVV 81 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHID--T-PA-KVTGYADGELWEKALRGADLVL 81 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcC--c-Cc-eEEEecCCCchHHHhCCCCEEE
Confidence 45679999999999999999988865544 555553222223222211100 0 11 11111 1 23567899999
Q ss_pred EcCCC
Q 015441 135 CCLPH 139 (406)
Q Consensus 135 ~al~~ 139 (406)
.+++.
T Consensus 82 itaG~ 86 (321)
T PTZ00325 82 ICAGV 86 (321)
T ss_pred ECCCC
Confidence 98875
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.083 Score=53.03 Aligned_cols=76 Identities=14% Similarity=0.177 Sum_probs=43.5
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCC------CceEEEEeccC----cCCccccccccCccc-cCCCcccccCcccCCCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHP------YFGIKLMTADR----KAGQSIGSVFPHLIS-QDLPTMVAVKDADFSNVD 131 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp------~~elv~l~s~~----~~G~~i~~v~p~l~~-~~~~~~~~~~~~~~~~vD 131 (406)
..||+|+||+|.||..++-.|.... ..|++.+--.. ..|..++-.|....- .... +..-+.+++.++|
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~-i~~~~~~~~~daD 80 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIV-ITDDPNVAFKDAD 80 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceE-EecCcHHHhCCCC
Confidence 4699999999999999999887432 33676664321 234433322211000 0111 1111234567889
Q ss_pred EEEEcCCC
Q 015441 132 AVFCCLPH 139 (406)
Q Consensus 132 vVF~al~~ 139 (406)
+|+.+.+.
T Consensus 81 ivvitaG~ 88 (322)
T cd01338 81 WALLVGAK 88 (322)
T ss_pred EEEEeCCC
Confidence 88888775
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.084 Score=53.01 Aligned_cols=26 Identities=27% Similarity=0.499 Sum_probs=21.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYF 89 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~ 89 (406)
.||+|+||+|.||..++..|...+.+
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~ 26 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELF 26 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCcc
Confidence 48999999999999999988864433
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.027 Score=49.12 Aligned_cols=92 Identities=17% Similarity=0.314 Sum_probs=49.2
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccCccccCCC--cccccCcccCCCCCEEEEcCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQDLP--TMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~l~~~~~~--~~~~~~~~~~~~vDvVF~al~~ 139 (406)
..+|.|+| +|-+|+.++..|..+..-++..++ |.. ..+.+.+.+ .+..+. .+.++ ...+.++|+||.|++.
T Consensus 12 ~~~vlviG-aGg~ar~v~~~L~~~g~~~i~i~n-Rt~~ra~~l~~~~---~~~~~~~~~~~~~-~~~~~~~DivI~aT~~ 85 (135)
T PF01488_consen 12 GKRVLVIG-AGGAARAVAAALAALGAKEITIVN-RTPERAEALAEEF---GGVNIEAIPLEDL-EEALQEADIVINATPS 85 (135)
T ss_dssp TSEEEEES-SSHHHHHHHHHHHHTTSSEEEEEE-SSHHHHHHHHHHH---TGCSEEEEEGGGH-CHHHHTESEEEE-SST
T ss_pred CCEEEEEC-CHHHHHHHHHHHHHcCCCEEEEEE-CCHHHHHHHHHHc---CccccceeeHHHH-HHHHhhCCeEEEecCC
Confidence 35899999 588899999999877444455544 432 112222211 111111 11111 1123578999999998
Q ss_pred cch---HHHHhhCCCC-CEEEEcCC
Q 015441 140 GTT---QEIIKGLPKS-LKIVDLSA 160 (406)
Q Consensus 140 ~~s---~~~~~~l~~G-~~VIDlSa 160 (406)
+.. .+..+..... ..|+|++-
T Consensus 86 ~~~~i~~~~~~~~~~~~~~v~Dla~ 110 (135)
T PF01488_consen 86 GMPIITEEMLKKASKKLRLVIDLAV 110 (135)
T ss_dssp TSTSSTHHHHTTTCHHCSEEEES-S
T ss_pred CCcccCHHHHHHHHhhhhceecccc
Confidence 755 2232222111 38999974
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.13 Score=51.25 Aligned_cols=97 Identities=18% Similarity=0.218 Sum_probs=54.1
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC------CccccccccCcccc-CCCccc-ccCcccCCCCCEE
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA------GQSIGSVFPHLISQ-DLPTMV-AVKDADFSNVDAV 133 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~------G~~i~~v~p~l~~~-~~~~~~-~~~~~~~~~vDvV 133 (406)
||+||+|+| +|.+|..+...|...- .++..+..+... |..+.... ..... ....+. ..+.+...++|+|
T Consensus 1 ~~mkI~IiG-~G~mG~~~A~~L~~~G-~~V~~~~r~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~v 77 (341)
T PRK08229 1 MMARICVLG-AGSIGCYLGGRLAAAG-ADVTLIGRARIGDELRAHGLTLTDYR-GRDVRVPPSAIAFSTDPAALATADLV 77 (341)
T ss_pred CCceEEEEC-CCHHHHHHHHHHHhcC-CcEEEEecHHHHHHHHhcCceeecCC-CcceecccceeEeccChhhccCCCEE
Confidence 678999999 9999999999998653 355555422111 11111000 00000 000000 1112234679999
Q ss_pred EEcCCCcchHHHHhhC----CCCCEEEEcCCc
Q 015441 134 FCCLPHGTTQEIIKGL----PKSLKIVDLSAD 161 (406)
Q Consensus 134 F~al~~~~s~~~~~~l----~~G~~VIDlSa~ 161 (406)
|+|++.....+.++.+ ..+..||++..-
T Consensus 78 il~vk~~~~~~~~~~l~~~~~~~~iii~~~nG 109 (341)
T PRK08229 78 LVTVKSAATADAAAALAGHARPGAVVVSFQNG 109 (341)
T ss_pred EEEecCcchHHHHHHHHhhCCCCCEEEEeCCC
Confidence 9999987766655433 456788887543
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.1 Score=51.73 Aligned_cols=74 Identities=16% Similarity=0.327 Sum_probs=49.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
+||+|+| +|.+|+.+.+.|.... .++... +++.. .+ . .+...++|+||+|+|.....
T Consensus 5 m~I~iiG-~G~~G~~lA~~l~~~G-~~V~~~-~r~~~-------------~~---~----~~~~~~advvi~~vp~~~~~ 61 (308)
T PRK14619 5 KTIAILG-AGAWGSTLAGLASANG-HRVRVW-SRRSG-------------LS---L----AAVLADADVIVSAVSMKGVR 61 (308)
T ss_pred CEEEEEC-ccHHHHHHHHHHHHCC-CEEEEE-eCCCC-------------CC---H----HHHHhcCCEEEEECChHHHH
Confidence 5899999 9999999999998653 355433 33221 01 1 11235789999999987666
Q ss_pred HHHhhC-----CCCCEEEEcCC
Q 015441 144 EIIKGL-----PKSLKIVDLSA 160 (406)
Q Consensus 144 ~~~~~l-----~~G~~VIDlSa 160 (406)
++++.+ ..+..|||.+.
T Consensus 62 ~v~~~l~~~~~~~~~ivi~~s~ 83 (308)
T PRK14619 62 PVAEQVQALNLPPETIIVTATK 83 (308)
T ss_pred HHHHHHHHhcCCCCcEEEEeCC
Confidence 655433 34678898775
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.058 Score=59.14 Aligned_cols=35 Identities=17% Similarity=0.450 Sum_probs=29.5
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+++||.|.||||++|+.|++.|.++...+++.+.
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~ 347 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLD 347 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEe
Confidence 34578999999999999999999876557888875
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.12 Score=51.61 Aligned_cols=71 Identities=17% Similarity=0.242 Sum_probs=40.8
Q ss_pred cEEEEECcccHHHHHHHHHHHc-CCCc-eEEEEeccCcC--CccccccccCccccCCCcccc--c-C-cccCCCCCEEEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLAN-HPYF-GIKLMTADRKA--GQSIGSVFPHLISQDLPTMVA--V-K-DADFSNVDAVFC 135 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~-hp~~-elv~l~s~~~~--G~~i~~v~p~l~~~~~~~~~~--~-~-~~~~~~vDvVF~ 135 (406)
+||+|+||||.+|..++..|.. .+.. +++++ ++... |..++..+. .... .+.. . + .+++.++|+||.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~-d~~~~~~g~alDl~~~---~~~~-~i~~~~~~d~~~~l~~~DiVIi 75 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLY-DIAPVTPGVAVDLSHI---PTAV-KIKGFSGEDPTPALEGADVVLI 75 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEE-ecCCCCcceehhhhcC---CCCc-eEEEeCCCCHHHHcCCCCEEEE
Confidence 5899999999999999998854 4544 44444 33221 222222120 0000 1111 1 1 235578999999
Q ss_pred cCCC
Q 015441 136 CLPH 139 (406)
Q Consensus 136 al~~ 139 (406)
|++.
T Consensus 76 taG~ 79 (312)
T PRK05086 76 SAGV 79 (312)
T ss_pred cCCC
Confidence 9885
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.068 Score=58.82 Aligned_cols=89 Identities=15% Similarity=0.272 Sum_probs=54.2
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccC-CCCCEEEEcCCCc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADF-SNVDAVFCCLPHG 140 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~-~~vDvVF~al~~~ 140 (406)
+++||+||| .|.+|+.+.+.|.+.. .+++.+ ++......... + + ....... .+.. ..+|+||+|+|..
T Consensus 368 ~~~kIgIIG-lG~mG~slA~~L~~~G-~~V~~~-dr~~~~~~a~~----~-G--v~~~~~~-~el~~~~aDvVILavP~~ 436 (667)
T PLN02712 368 SKLKIAIVG-FGNFGQFLAKTMVKQG-HTVLAY-SRSDYSDEAQK----L-G--VSYFSDA-DDLCEEHPEVILLCTSIL 436 (667)
T ss_pred CCCEEEEEe-cCHHHHHHHHHHHHCc-CEEEEE-ECChHHHHHHH----c-C--CeEeCCH-HHHHhcCCCEEEECCChH
Confidence 457999999 9999999999998653 466644 33221011000 1 1 1001111 1112 2489999999987
Q ss_pred chHHHHhh-----CCCCCEEEEcCCc
Q 015441 141 TTQEIIKG-----LPKSLKIVDLSAD 161 (406)
Q Consensus 141 ~s~~~~~~-----l~~G~~VIDlSa~ 161 (406)
...+++.. +..|+.|+|.++.
T Consensus 437 ~~~~vi~~l~~~~lk~g~ivvDv~Sv 462 (667)
T PLN02712 437 STEKVLKSLPFQRLKRSTLFVDVLSV 462 (667)
T ss_pred HHHHHHHHHHHhcCCCCcEEEECCCc
Confidence 77665543 2458899999775
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.11 Score=57.22 Aligned_cols=88 Identities=17% Similarity=0.302 Sum_probs=53.9
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCccc-C-CCCCEEEEcCCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDAD-F-SNVDAVFCCLPH 139 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~-~-~~vDvVF~al~~ 139 (406)
.++||+||| .|.+|+.+.+.|..+. .++..+. ++.. ..... .+ + ..... +.++ . .++|+||+|+|.
T Consensus 51 ~~~kIgIIG-~G~mG~slA~~L~~~G-~~V~~~d-r~~~-~~~A~---~~-G--v~~~~--d~~e~~~~~aDvViLavP~ 118 (667)
T PLN02712 51 TQLKIAIIG-FGNYGQFLAKTLISQG-HTVLAHS-RSDH-SLAAR---SL-G--VSFFL--DPHDLCERHPDVILLCTSI 118 (667)
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHHCC-CEEEEEe-CCHH-HHHHH---Hc-C--CEEeC--CHHHHhhcCCCEEEEcCCH
Confidence 346899999 8999999999998763 5665543 3211 11000 01 1 10011 1112 2 358999999998
Q ss_pred cchHHHHhhC-----CCCCEEEEcCCc
Q 015441 140 GTTQEIIKGL-----PKSLKIVDLSAD 161 (406)
Q Consensus 140 ~~s~~~~~~l-----~~G~~VIDlSa~ 161 (406)
....++++.+ ..|+.|+|.++.
T Consensus 119 ~~~~~vl~~l~~~~l~~g~iVvDv~Sv 145 (667)
T PLN02712 119 ISTENVLKSLPLQRLKRNTLFVDVLSV 145 (667)
T ss_pred HHHHHHHHhhhhhcCCCCeEEEECCCC
Confidence 7666665432 357899998753
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.064 Score=53.55 Aligned_cols=33 Identities=15% Similarity=0.364 Sum_probs=27.8
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|+||.|.||||++|+.|++.|.+....+++++.
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~ 33 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMD 33 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEe
Confidence 458999999999999999999865456787775
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.11 Score=53.55 Aligned_cols=95 Identities=22% Similarity=0.349 Sum_probs=50.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccc-----cccCccc---c--CCCcccc-cCc-ccCCCCC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGS-----VFPHLIS---Q--DLPTMVA-VKD-ADFSNVD 131 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~-----v~p~l~~---~--~~~~~~~-~~~-~~~~~vD 131 (406)
+||+|+| .|++|..+...|.+.. .++..+..+...-..+.. ..|.+.. . ....+.. .+. +...++|
T Consensus 1 mkI~vIG-lG~~G~~lA~~La~~G-~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~ad 78 (411)
T TIGR03026 1 MKIAVIG-LGYVGLPLAALLADLG-HEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDAD 78 (411)
T ss_pred CEEEEEC-CCchhHHHHHHHHhcC-CeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCC
Confidence 3799999 9999999999998643 355555322111011110 0111110 0 0000111 111 1246899
Q ss_pred EEEEcCCCcch----------HH----HHhhCCCCCEEEEcCC
Q 015441 132 AVFCCLPHGTT----------QE----IIKGLPKSLKIVDLSA 160 (406)
Q Consensus 132 vVF~al~~~~s----------~~----~~~~l~~G~~VIDlSa 160 (406)
+||.|+|.... .. +.+.+..|..|||.|.
T Consensus 79 vvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~ST 121 (411)
T TIGR03026 79 VIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLEST 121 (411)
T ss_pred EEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence 99999997642 11 2233456888998885
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.077 Score=53.16 Aligned_cols=95 Identities=9% Similarity=0.089 Sum_probs=55.6
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-cccccccc-CccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-QSIGSVFP-HLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-~~i~~v~p-~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
..+++|+| +|..|+..++.+.....++.+.+.++.... ..+..... .+ +.+...+.+. ++...++|+|+.|||..
T Consensus 127 ~~~v~iiG-aG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~-~~~~~~~~~~-~~~~~~aDiVi~aT~s~ 203 (325)
T PRK08618 127 AKTLCLIG-TGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF-NTEIYVVNSA-DEAIEEADIIVTVTNAK 203 (325)
T ss_pred CcEEEEEC-CcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc-CCcEEEeCCH-HHHHhcCCEEEEccCCC
Confidence 35799999 999999998887655556777777654211 11111000 00 1011111111 22346899999999987
Q ss_pred chHHHHhhCCCCCEEEEcCCc
Q 015441 141 TTQEIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 141 ~s~~~~~~l~~G~~VIDlSa~ 161 (406)
... +...++.|+.|+-..++
T Consensus 204 ~p~-i~~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 204 TPV-FSEKLKKGVHINAVGSF 223 (325)
T ss_pred Ccc-hHHhcCCCcEEEecCCC
Confidence 432 22456789998866654
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.13 Score=52.97 Aligned_cols=86 Identities=17% Similarity=0.319 Sum_probs=51.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|+|+| .|.+|+.+++.|..+ .+++.+.. +......... .+ .......+ ++.+..+|+|++++|.....
T Consensus 193 ktVGIvG-~G~IG~~vA~~l~~f-G~~V~~~d-r~~~~~~~~~---~~---g~~~~~~l-~ell~~aDvV~l~lPlt~~T 262 (385)
T PRK07574 193 MTVGIVG-AGRIGLAVLRRLKPF-DVKLHYTD-RHRLPEEVEQ---EL---GLTYHVSF-DSLVSVCDVVTIHCPLHPET 262 (385)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhC-CCEEEEEC-CCCCchhhHh---hc---CceecCCH-HHHhhcCCEEEEcCCCCHHH
Confidence 4799999 999999999999865 45666553 2211111110 00 01001112 23357899999999955432
Q ss_pred ------HHHhhCCCCCEEEEcC
Q 015441 144 ------EIIKGLPKSLKIVDLS 159 (406)
Q Consensus 144 ------~~~~~l~~G~~VIDlS 159 (406)
+....++.|..+|+.+
T Consensus 263 ~~li~~~~l~~mk~ga~lIN~a 284 (385)
T PRK07574 263 EHLFDADVLSRMKRGSYLVNTA 284 (385)
T ss_pred HHHhCHHHHhcCCCCcEEEECC
Confidence 2333456788999655
|
|
| >KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.16 Score=52.53 Aligned_cols=37 Identities=27% Similarity=0.545 Sum_probs=29.4
Q ss_pred ccCCccEEEEECcccHHHHHHHHHHHcCCCceEEEEec
Q 015441 59 KSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA 96 (406)
Q Consensus 59 ~~~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s 96 (406)
.+.++..|.|+||||.+|+.+.+.|.+.. +.+.++.-
T Consensus 75 ~~~~~~~VlVvGatG~vG~~iv~~llkrg-f~vra~VR 111 (411)
T KOG1203|consen 75 NSKKPTTVLVVGATGKVGRRIVKILLKRG-FSVRALVR 111 (411)
T ss_pred CCCCCCeEEEecCCCchhHHHHHHHHHCC-Ceeeeecc
Confidence 33445789999999999999999998765 66666664
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.073 Score=50.63 Aligned_cols=32 Identities=31% Similarity=0.395 Sum_probs=26.5
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+++|.|+||||++|+.|++.|.+.. .+++++.
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g-~~V~~~~ 48 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKG-FAVKAGV 48 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCC-CEEEEEe
Confidence 4689999999999999999998753 5676664
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.14 Score=46.62 Aligned_cols=73 Identities=15% Similarity=0.279 Sum_probs=49.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.||.|+|+.+++|..+++.|.++.. ++. +..++. . ++ .+.+.++|+||.|++...
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g~-~V~-v~~r~~-----~---------~l-------~~~l~~aDiVIsat~~~~-- 99 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRNA-TVT-VCHSKT-----K---------NL-------KEHTKQADIVIVAVGKPG-- 99 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCC-EEE-EEECCc-----h---------hH-------HHHHhhCCEEEEcCCCCc--
Confidence 5899999766789999999987643 543 433321 0 11 123467999999998643
Q ss_pred HHHh--hCCCCCEEEEcCCcc
Q 015441 144 EIIK--GLPKSLKIVDLSADF 162 (406)
Q Consensus 144 ~~~~--~l~~G~~VIDlSa~f 162 (406)
+.. .++.+..|||++-+.
T Consensus 100 -ii~~~~~~~~~viIDla~pr 119 (168)
T cd01080 100 -LVKGDMVKPGAVVIDVGINR 119 (168)
T ss_pred -eecHHHccCCeEEEEccCCC
Confidence 221 356688999999874
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.12 Score=56.93 Aligned_cols=90 Identities=16% Similarity=0.182 Sum_probs=50.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC--CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA--GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~--G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
|||.|.||+|++|+.|++.|.+.. .+++.+...... ...+..+ . .++... .+ ...+.++|+||.+.+...
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G-~~Vi~ldr~~~~~~~~~ve~v----~-~Dl~d~-~l-~~al~~~D~VIHLAa~~~ 72 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAG-HTVSGIAQHPHDALDPRVDYV----C-ASLRNP-VL-QELAGEADAVIHLAPVDT 72 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-CEEEEEeCChhhcccCCceEE----E-ccCCCH-HH-HHHhcCCCEEEEcCccCc
Confidence 389999999999999999888653 467666532111 0011111 1 121111 01 122357899999987432
Q ss_pred ----------hHHHHhhC-CCCCEEEEcCCc
Q 015441 142 ----------TQEIIKGL-PKSLKIVDLSAD 161 (406)
Q Consensus 142 ----------s~~~~~~l-~~G~~VIDlSa~ 161 (406)
+..++.++ +.|+++|-+|+.
T Consensus 73 ~~~~~vNv~Gt~nLleAA~~~GvRiV~~SS~ 103 (699)
T PRK12320 73 SAPGGVGITGLAHVANAAARAGARLLFVSQA 103 (699)
T ss_pred cchhhHHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 12233333 457777767765
|
|
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.066 Score=53.73 Aligned_cols=96 Identities=11% Similarity=0.154 Sum_probs=56.0
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-ccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
..+|+|+| +|..|+..++.|...+.++.+.+.++.... +.+...+....+..+...... ++... +|+|+.|||+..
T Consensus 129 ~~~vgiiG-~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~-aDiVv~aTps~~ 205 (326)
T PRK06046 129 SKVVGIIG-AGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDI-EEACD-CDILVTTTPSRK 205 (326)
T ss_pred CCEEEEEC-CcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCH-HHHhh-CCEEEEecCCCC
Confidence 46899999 999999999999877888988888765321 111110000001011111111 11233 899999999753
Q ss_pred hHHHHhhCCCCCEEEEcCCc
Q 015441 142 TQEIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 142 s~~~~~~l~~G~~VIDlSa~ 161 (406)
--=....++.|+.|.-.+++
T Consensus 206 P~~~~~~l~~g~hV~~iGs~ 225 (326)
T PRK06046 206 PVVKAEWIKEGTHINAIGAD 225 (326)
T ss_pred cEecHHHcCCCCEEEecCCC
Confidence 21111235678887766653
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.11 Score=52.89 Aligned_cols=91 Identities=12% Similarity=0.206 Sum_probs=50.8
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchHH
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQE 144 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~~ 144 (406)
+|+|+| +|.+|+.+.+.|...- .++..+..+... ....... .+...+. ....+ .+...++|+||+|+|.....+
T Consensus 2 ~I~iIG-~GliG~siA~~L~~~G-~~v~i~~~~~~~-~~~~~a~-~~~~~~~-~~~~~-~~~~~~aDlVilavP~~~~~~ 75 (359)
T PRK06545 2 TVLIVG-LGLIGGSLALAIKAAG-PDVFIIGYDPSA-AQLARAL-GFGVIDE-LAADL-QRAAAEADLIVLAVPVDATAA 75 (359)
T ss_pred eEEEEE-eCHHHHHHHHHHHhcC-CCeEEEEeCCCH-HHHHHHh-cCCCCcc-cccCH-HHHhcCCCEEEEeCCHHHHHH
Confidence 699999 9999999999998542 133222221111 1111000 0000000 00111 122468999999999887766
Q ss_pred HHhhC-----CCCCEEEEcCCc
Q 015441 145 IIKGL-----PKSLKIVDLSAD 161 (406)
Q Consensus 145 ~~~~l-----~~G~~VIDlSa~ 161 (406)
+++.+ ..++.|.|.++-
T Consensus 76 vl~~l~~~~l~~~~ivtDv~Sv 97 (359)
T PRK06545 76 LLAELADLELKPGVIVTDVGSV 97 (359)
T ss_pred HHHHHhhcCCCCCcEEEeCccc
Confidence 65433 347888898774
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.077 Score=51.97 Aligned_cols=31 Identities=29% Similarity=0.475 Sum_probs=25.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||||++|+.|++.|.++. .+++.+.
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g-~~V~~~~ 35 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRG-YTVKATV 35 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCC-CEEEEEE
Confidence 479999999999999999998764 4666554
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.14 Score=51.12 Aligned_cols=72 Identities=18% Similarity=0.225 Sum_probs=44.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccCcCCccccccccCccccCCCcccc--cC---cccCCCCCEEEEcC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRKAGQSIGSVFPHLISQDLPTMVA--VK---DADFSNVDAVFCCL 137 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~--~~---~~~~~~vDvVF~al 137 (406)
+||+|+||+|.||..++-.|...+.. |++.+--....|..++-.|... . ..+.. -+ .+++.++|+|+.+.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~---~-~~i~~~~~~~~~y~~~~daDivvita 76 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINT---P-AKVTGYLGPEELKKALKGADVVVIPA 76 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCC---c-ceEEEecCCCchHHhcCCCCEEEEeC
Confidence 48999999999999999988865543 5665532233344433222110 0 01211 11 24578999999988
Q ss_pred CC
Q 015441 138 PH 139 (406)
Q Consensus 138 ~~ 139 (406)
+.
T Consensus 77 G~ 78 (310)
T cd01337 77 GV 78 (310)
T ss_pred CC
Confidence 75
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.11 Score=54.18 Aligned_cols=95 Identities=13% Similarity=0.178 Sum_probs=53.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc------CCccccccccCcccc-CCCccc-ccCcccCCCCCEEEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK------AGQSIGSVFPHLISQ-DLPTMV-AVKDADFSNVDAVFC 135 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~------~G~~i~~v~p~l~~~-~~~~~~-~~~~~~~~~vDvVF~ 135 (406)
+||+|+| .||+|.-+...|... ++++.+.-... .|... ...|.+... ....+. ..+.+...++|++|.
T Consensus 7 mkI~vIG-lGyvGlpmA~~la~~--~~V~g~D~~~~~ve~l~~G~~~-~~e~~~~~l~~~g~l~~t~~~~~~~~advvii 82 (425)
T PRK15182 7 VKIAIIG-LGYVGLPLAVEFGKS--RQVVGFDVNKKRILELKNGVDV-NLETTEEELREARYLKFTSEIEKIKECNFYII 82 (425)
T ss_pred CeEEEEC-cCcchHHHHHHHhcC--CEEEEEeCCHHHHHHHHCcCCC-CCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEE
Confidence 6899999 999999999998763 67766643221 12110 001111000 000000 111223468999999
Q ss_pred cCCCcchH--------------HHHhhCCCCCEEEEcCCcc
Q 015441 136 CLPHGTTQ--------------EIIKGLPKSLKIVDLSADF 162 (406)
Q Consensus 136 al~~~~s~--------------~~~~~l~~G~~VIDlSa~f 162 (406)
|.|+.... .+.+.+..|..|||-|.-.
T Consensus 83 ~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~ 123 (425)
T PRK15182 83 TVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVY 123 (425)
T ss_pred EcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCC
Confidence 99966311 1223345688999887753
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.14 Score=52.44 Aligned_cols=33 Identities=30% Similarity=0.565 Sum_probs=27.1
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
++++|.|.||||++|+.+++.|.++. .+++.+.
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~G-~~V~~l~ 91 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRRG-YNVVAVA 91 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEE
Confidence 34689999999999999999998653 5777665
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.18 Score=50.39 Aligned_cols=74 Identities=16% Similarity=0.232 Sum_probs=42.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCc-eEEEEecc--CcCCccccccccCcc-ccCCCcccccCcccCCCCCEEEEcCC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTAD--RKAGQSIGSVFPHLI-SQDLPTMVAVKDADFSNVDAVFCCLP 138 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~--~~~G~~i~~v~p~l~-~~~~~~~~~~~~~~~~~vDvVF~al~ 138 (406)
+||+|+|| |.||+.++-+|....-. |++.+--. ...|..++-.|.... ..+......-+-.++.++|+|+.+.+
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG 78 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAG 78 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCC
Confidence 48999998 99999999999876666 77665322 223433332221110 11111111111245678999988874
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.1 Score=51.39 Aligned_cols=32 Identities=31% Similarity=0.426 Sum_probs=26.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEec
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA 96 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s 96 (406)
.+|.|.||||++|+.+++.|.++. .+++.+..
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r 37 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLLLRG-YTVKATVR 37 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEEC
Confidence 479999999999999999998764 46665553
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.095 Score=52.03 Aligned_cols=33 Identities=12% Similarity=0.413 Sum_probs=26.6
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
++.+|.|.||+|++|+.|++.|.+.. .+++.+.
T Consensus 8 ~~~~vlItG~~GfIG~~l~~~L~~~g-~~V~~~~ 40 (338)
T PLN00198 8 GKKTACVIGGTGFLASLLIKLLLQKG-YAVNTTV 40 (338)
T ss_pred CCCeEEEECCchHHHHHHHHHHHHCC-CEEEEEE
Confidence 34689999999999999999998754 4665554
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.13 Score=49.69 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=26.0
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEec
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTA 96 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s 96 (406)
+|.|.||||++|+.|++.|.+. ..+++.+..
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~-g~~V~~~~r 32 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAA-GHDVRGLDR 32 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhC-CCeEEEEeC
Confidence 4999999999999999999875 457777754
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.11 Score=51.71 Aligned_cols=92 Identities=15% Similarity=0.177 Sum_probs=51.9
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
..+|+|+| +|.+|+.+++.|..+...++ .+.++... ...+...+ .. ......++ .+.+.++|+||.|++...
T Consensus 178 ~~~V~ViG-aG~iG~~~a~~L~~~g~~~V-~v~~r~~~ra~~la~~~---g~-~~~~~~~~-~~~l~~aDvVi~at~~~~ 250 (311)
T cd05213 178 GKKVLVIG-AGEMGELAAKHLAAKGVAEI-TIANRTYERAEELAKEL---GG-NAVPLDEL-LELLNEADVVISATGAPH 250 (311)
T ss_pred CCEEEEEC-cHHHHHHHHHHHHHcCCCEE-EEEeCCHHHHHHHHHHc---CC-eEEeHHHH-HHHHhcCCEEEECCCCCc
Confidence 36899999 59999999999886433344 44444321 11111111 11 10001111 122357899999999876
Q ss_pred hHHHHhh-C----CCCCEEEEcCCc
Q 015441 142 TQEIIKG-L----PKSLKIVDLSAD 161 (406)
Q Consensus 142 s~~~~~~-l----~~G~~VIDlSa~ 161 (406)
..+..+. + .++..+||++-+
T Consensus 251 ~~~~~~~~~~~~~~~~~~viDlavP 275 (311)
T cd05213 251 YAKIVERAMKKRSGKPRLIVDLAVP 275 (311)
T ss_pred hHHHHHHHHhhCCCCCeEEEEeCCC
Confidence 6333332 2 146789999864
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.21 Score=50.28 Aligned_cols=91 Identities=19% Similarity=0.277 Sum_probs=51.8
Q ss_pred CccEEEEECcccHHHHHHHHHHHcC---------CCceEEEEeccCcCCc-cccccc-cCccccCCCcccccCcc--cCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANH---------PYFGIKLMTADRKAGQ-SIGSVF-PHLISQDLPTMVAVKDA--DFS 128 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~h---------p~~elv~l~s~~~~G~-~i~~v~-p~l~~~~~~~~~~~~~~--~~~ 128 (406)
|++||+|+| .|-||+.++++|.++ -.++++.+++++..-. .++-.. ..+.. +.. .. ...+ .-.
T Consensus 2 ~~v~v~l~G-~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~~~~~~-~~~-~~-~~~~~~~~~ 77 (333)
T COG0460 2 KTVKVGLLG-LGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAEVWTT-DGA-LS-LGDEVLLDE 77 (333)
T ss_pred ceEEEEEEc-cCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccchhhhee-ccc-cc-ccHhhhccc
Confidence 568999999 999999999999853 2467777776532111 011000 00100 100 00 0011 114
Q ss_pred CCCEEEEcCCCcc--hH--HHH-hhCCCCCEEE
Q 015441 129 NVDAVFCCLPHGT--TQ--EII-KGLPKSLKIV 156 (406)
Q Consensus 129 ~vDvVF~al~~~~--s~--~~~-~~l~~G~~VI 156 (406)
+.|+|+.+.+... ++ ++. +++++|..||
T Consensus 78 ~~dvvve~~~~d~~~~~~~~~~~~al~~GkhVV 110 (333)
T COG0460 78 DIDVVVELVGGDVEPAEPADLYLKALENGKHVV 110 (333)
T ss_pred cCCEEEecCcccCCchhhHHHHHHHHHcCCeEE
Confidence 7899999888622 23 333 4568899998
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.21 Score=50.23 Aligned_cols=86 Identities=12% Similarity=0.202 Sum_probs=50.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
++|+|+| .|.+|+.+.+.|...-.+++... ++.. ...... . ......+ ++.+.++|+|++|+|.....
T Consensus 147 ~~VgIIG-~G~IG~~vA~~L~~~~g~~V~~~-d~~~-~~~~~~----~----~~~~~~l-~ell~~aDvIvl~lP~t~~t 214 (332)
T PRK08605 147 LKVAVIG-TGRIGLAVAKIFAKGYGSDVVAY-DPFP-NAKAAT----Y----VDYKDTI-EEAVEGADIVTLHMPATKYN 214 (332)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhcCCCEEEEE-CCCc-cHhHHh----h----ccccCCH-HHHHHhCCEEEEeCCCCcch
Confidence 4799999 99999999999843224566544 3221 111110 0 0001112 22346899999999965443
Q ss_pred HH------HhhCCCCCEEEEcCCc
Q 015441 144 EI------IKGLPKSLKIVDLSAD 161 (406)
Q Consensus 144 ~~------~~~l~~G~~VIDlSa~ 161 (406)
+. .+.++.|..+|+.|--
T Consensus 215 ~~li~~~~l~~mk~gailIN~sRG 238 (332)
T PRK08605 215 HYLFNADLFKHFKKGAVFVNCARG 238 (332)
T ss_pred hhhcCHHHHhcCCCCcEEEECCCC
Confidence 32 3345678899987743
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.12 Score=51.07 Aligned_cols=98 Identities=22% Similarity=0.395 Sum_probs=52.6
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCcccccc--ccC-ccccCCC-ccc-ccCc-ccCCCCCEEEEc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSV--FPH-LISQDLP-TMV-AVKD-ADFSNVDAVFCC 136 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v--~p~-l~~~~~~-~~~-~~~~-~~~~~vDvVF~a 136 (406)
|+||+|+| .|.+|..+...|.+.. .++..+......-..+... .+. +.+...+ ... ..+. +...++|+||+|
T Consensus 1 mmkI~iiG-~G~mG~~~a~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~ 78 (325)
T PRK00094 1 MMKIAVLG-AGSWGTALAIVLARNG-HDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVA 78 (325)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCC-CEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEe
Confidence 46899999 7999999999998642 3554443211110111110 000 0000000 011 1111 123588999999
Q ss_pred CCCcchHHHHhh----CCCCCEEEEcCCcc
Q 015441 137 LPHGTTQEIIKG----LPKSLKIVDLSADF 162 (406)
Q Consensus 137 l~~~~s~~~~~~----l~~G~~VIDlSa~f 162 (406)
++.....+.++. +..+..|||++.-+
T Consensus 79 v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv 108 (325)
T PRK00094 79 VPSQALREVLKQLKPLLPPDAPIVWATKGI 108 (325)
T ss_pred CCHHHHHHHHHHHHhhcCCCCEEEEEeecc
Confidence 998655555443 34577899987444
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.1 Score=51.61 Aligned_cols=74 Identities=20% Similarity=0.277 Sum_probs=41.0
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccC--cCCccccccccCcc-ccCCCcccc-cCcccCCCCCEEEEcCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR--KAGQSIGSVFPHLI-SQDLPTMVA-VKDADFSNVDAVFCCLP 138 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~--~~G~~i~~v~p~l~-~~~~~~~~~-~~~~~~~~vDvVF~al~ 138 (406)
|+||+|+|| |.+|..++..+..+...+++.+--.. ..|...+..+.... .... .+.. .+.+++.++|+||++.+
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~-~i~~~~d~~~~~~aDiVii~~~ 79 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDT-KITGTNDYEDIAGSDVVVITAG 79 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCc-EEEeCCCHHHHCCCCEEEECCC
Confidence 469999997 99999999999876533766653211 11222211111110 0011 1111 12234678999999875
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.13 Score=52.59 Aligned_cols=94 Identities=11% Similarity=0.211 Sum_probs=52.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCC----
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLP---- 138 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~---- 138 (406)
.+|.|+| +|-+|+..++.|.... .++..+ +++.. -+.+...+.............+ .+.+.++|+||.|++
T Consensus 168 ~~VlViG-aG~vG~~aa~~a~~lG-a~V~v~-d~~~~~~~~l~~~~g~~v~~~~~~~~~l-~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 168 GDVTIIG-GGVVGTNAAKMANGLG-ATVTIL-DINIDRLRQLDAEFGGRIHTRYSNAYEI-EDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred ceEEEEc-CCHHHHHHHHHHHHCC-CeEEEE-ECCHHHHHHHHHhcCceeEeccCCHHHH-HHHHccCCEEEEccccCCC
Confidence 5799999 5999999999998764 355444 33211 0111111100000000000111 112357899999973
Q ss_pred ---CcchHHHHhhCCCCCEEEEcCCc
Q 015441 139 ---HGTTQEIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 139 ---~~~s~~~~~~l~~G~~VIDlSa~ 161 (406)
.-++++....++.|..|||++.+
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDva~d 269 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDVAID 269 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEEecC
Confidence 22456666666778899999865
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.094 Score=51.37 Aligned_cols=87 Identities=18% Similarity=0.328 Sum_probs=49.8
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH-
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ- 143 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~- 143 (406)
||+|+| .|.+|+.+.+.|..+. .++... +++. .+... +........... .+...++|+||+|+|.....
T Consensus 1 ~IgvIG-~G~mG~~iA~~l~~~G-~~V~~~-dr~~--~~~~~----~~~~g~~~~~~~-~~~~~~aDivi~~vp~~~~~~ 70 (291)
T TIGR01505 1 KVGFIG-LGIMGSPMSINLAKAG-YQLHVT-TIGP--EVADE----LLAAGAVTAETA-RQVTEQADVIFTMVPDSPQVE 70 (291)
T ss_pred CEEEEE-ecHHHHHHHHHHHHCC-CeEEEE-cCCH--HHHHH----HHHCCCcccCCH-HHHHhcCCEEEEecCCHHHHH
Confidence 589999 9999999999988653 466544 3321 11111 100001001111 22346899999999975332
Q ss_pred HHH-------hhCCCCCEEEEcCCc
Q 015441 144 EII-------KGLPKSLKIVDLSAD 161 (406)
Q Consensus 144 ~~~-------~~l~~G~~VIDlSa~ 161 (406)
... +.+..|..|||.|..
T Consensus 71 ~v~~~~~~~~~~~~~g~iivd~st~ 95 (291)
T TIGR01505 71 EVAFGENGIIEGAKPGKTLVDMSSI 95 (291)
T ss_pred HHHcCcchHhhcCCCCCEEEECCCC
Confidence 222 123457889998764
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.23 Score=49.89 Aligned_cols=75 Identities=15% Similarity=0.228 Sum_probs=41.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccCcCCccccccccCccccCCCccccc-C-cccCCCCCEEEEcCCC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRKAGQSIGSVFPHLISQDLPTMVAV-K-DADFSNVDAVFCCLPH 139 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~-~-~~~~~~vDvVF~al~~ 139 (406)
.||+|+||+|.||..+...|...+.. |++.+--....|...+-.|.... ..+..+... + .+++.++|+|+++.+.
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~-~~i~~~~~~~d~~~~l~~aDiVVitAG~ 96 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTP-AQVRGFLGDDQLGDALKGADLVIIPAGV 96 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcC-ceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence 48999999999999999999865554 56555322223332221110000 001000010 0 1346789999888775
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.095 Score=51.36 Aligned_cols=29 Identities=31% Similarity=0.685 Sum_probs=22.8
Q ss_pred EEECcccHHHHHHHHHHHcCCC-ceEEEEe
Q 015441 67 GLLGASGYTGAEIVRLLANHPY-FGIKLMT 95 (406)
Q Consensus 67 aIvGATG~vG~eLlrlL~~hp~-~elv~l~ 95 (406)
.|.||+|++|+.|++.|+++.. .+++.+.
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d 30 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLD 30 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcc
Confidence 3789999999999999987664 5565443
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.17 Score=50.05 Aligned_cols=85 Identities=16% Similarity=0.225 Sum_probs=49.6
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccCccccCCCcccccCcccC----CCCCEEEEcCCC
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAVKDADF----SNVDAVFCCLPH 139 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~l~~~~~~~~~~~~~~~~----~~vDvVF~al~~ 139 (406)
||+|+| .|..|+.+.+.|.+.. .++... +++. .-+.+.. . + ..... +..++ .+.|+||.|+|.
T Consensus 2 ~Ig~IG-lG~MG~~mA~~L~~~g-~~v~v~-dr~~~~~~~~~~----~-g--~~~~~--~~~e~~~~~~~~dvvi~~v~~ 69 (301)
T PRK09599 2 QLGMIG-LGRMGGNMARRLLRGG-HEVVGY-DRNPEAVEALAE----E-G--ATGAD--SLEELVAKLPAPRVVWLMVPA 69 (301)
T ss_pred EEEEEc-ccHHHHHHHHHHHHCC-CeEEEE-ECCHHHHHHHHH----C-C--CeecC--CHHHHHhhcCCCCEEEEEecC
Confidence 899999 9999999999988653 455443 3321 1111111 0 1 00010 11111 246999999998
Q ss_pred c-chHHHHh----hCCCCCEEEEcCCc
Q 015441 140 G-TTQEIIK----GLPKSLKIVDLSAD 161 (406)
Q Consensus 140 ~-~s~~~~~----~l~~G~~VIDlSa~ 161 (406)
. ...+... .+..|..|||.|.-
T Consensus 70 ~~~~~~v~~~l~~~l~~g~ivid~st~ 96 (301)
T PRK09599 70 GEITDATIDELAPLLSPGDIVIDGGNS 96 (301)
T ss_pred CcHHHHHHHHHHhhCCCCCEEEeCCCC
Confidence 7 3344432 34568889998764
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.3 Score=48.03 Aligned_cols=102 Identities=15% Similarity=0.238 Sum_probs=57.6
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-C---ccccccccC------ccccC----CCccc-ccCcccC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-G---QSIGSVFPH------LISQD----LPTMV-AVKDADF 127 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G---~~i~~v~p~------l~~~~----~~~~~-~~~~~~~ 127 (406)
+.||+|+| .|..|..+...|+.+ ..+++.+...... . ..+...... +...+ +..+. ..+.+++
T Consensus 5 ~~~V~ViG-aG~mG~~iA~~~a~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 82 (286)
T PRK07819 5 IQRVGVVG-AGQMGAGIAEVCARA-GVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGDF 82 (286)
T ss_pred ccEEEEEc-ccHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHHh
Confidence 35899999 699999999988865 4566555321111 0 011110000 00000 00000 1112345
Q ss_pred CCCCEEEEcCCCcchHHHH------hhC-CCCCEEEEcCCcccCCC
Q 015441 128 SNVDAVFCCLPHGTTQEII------KGL-PKSLKIVDLSADFRLRD 166 (406)
Q Consensus 128 ~~vDvVF~al~~~~s~~~~------~~l-~~G~~VIDlSa~fRl~~ 166 (406)
+++|+||.|.+.....+.. +.+ ..++.++++|+.+...+
T Consensus 83 ~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~ 128 (286)
T PRK07819 83 ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMK 128 (286)
T ss_pred CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH
Confidence 7999999999987764322 223 56889999999876544
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.091 Score=51.08 Aligned_cols=100 Identities=17% Similarity=0.288 Sum_probs=58.2
Q ss_pred EEEEECcccHHHHHHHHHHHcCCC--ceEEEEeccCcCC-ccccccccCccccCCCcccccCccc-CCCCCEEEEcCCCc
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPY--FGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDAD-FSNVDAVFCCLPHG 140 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~--~elv~l~s~~~~G-~~i~~v~p~l~~~~~~~~~~~~~~~-~~~vDvVF~al~~~ 140 (406)
+|+|+| .|.+|+.+++.|.+... .+-+.+.+++... +.+...++ + .... .+..+ ..++|+||+|++..
T Consensus 2 ~I~iIG-~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~---g--~~~~--~~~~~~~~~aDiVilav~p~ 73 (273)
T PRK07680 2 NIGFIG-TGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYP---G--IHVA--KTIEEVISQSDLIFICVKPL 73 (273)
T ss_pred EEEEEC-ccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcC---C--eEEE--CCHHHHHHhCCEEEEecCHH
Confidence 799999 89999999998875432 2223444443211 11111010 1 1101 11112 35789999999877
Q ss_pred chHHHHhh----CCCCCEEEEcCCcccCCCccchhhhcC
Q 015441 141 TTQEIIKG----LPKSLKIVDLSADFRLRDVSEYEEWYG 175 (406)
Q Consensus 141 ~s~~~~~~----l~~G~~VIDlSa~fRl~~~~~~~~~y~ 175 (406)
...++++. +..+..|||+++... .+..++|++
T Consensus 74 ~~~~vl~~l~~~l~~~~~iis~~ag~~---~~~L~~~~~ 109 (273)
T PRK07680 74 DIYPLLQKLAPHLTDEHCLVSITSPIS---VEQLETLVP 109 (273)
T ss_pred HHHHHHHHHHhhcCCCCEEEEECCCCC---HHHHHHHcC
Confidence 76666543 345678999988653 334566655
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.2 Score=50.48 Aligned_cols=85 Identities=16% Similarity=0.217 Sum_probs=51.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.+|+|+| .|.+|+++.+.|..+. +++.++ ++..... .... + + .. ..++ ++.+.++|+|++|+|....
T Consensus 151 ktvgIiG-~G~IG~~vA~~l~~~G-~~V~~~-d~~~~~~-~~~~---~-~--~~-~~~l-~ell~~aDiV~l~lP~t~~T 218 (333)
T PRK13243 151 KTIGIIG-FGRIGQAVARRAKGFG-MRILYY-SRTRKPE-AEKE---L-G--AE-YRPL-EELLRESDFVSLHVPLTKET 218 (333)
T ss_pred CEEEEEC-cCHHHHHHHHHHHHCC-CEEEEE-CCCCChh-hHHH---c-C--CE-ecCH-HHHHhhCCEEEEeCCCChHH
Confidence 5899999 8999999999998663 566544 4322111 0100 0 1 00 1111 2234689999999995442
Q ss_pred -----HHHHhhCCCCCEEEEcCC
Q 015441 143 -----QEIIKGLPKSLKIVDLSA 160 (406)
Q Consensus 143 -----~~~~~~l~~G~~VIDlSa 160 (406)
.+....++.|..+|+.|-
T Consensus 219 ~~~i~~~~~~~mk~ga~lIN~aR 241 (333)
T PRK13243 219 YHMINEERLKLMKPTAILVNTAR 241 (333)
T ss_pred hhccCHHHHhcCCCCeEEEECcC
Confidence 233344567889997653
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.25 Score=49.43 Aligned_cols=79 Identities=15% Similarity=0.225 Sum_probs=49.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.+|+|+| .|.+|+++.++|..+ .+++.++ ++.. ..... . . ...+ ++.+..+|+|.+++|....
T Consensus 148 ktvgIiG-~G~IG~~va~~l~~f-g~~V~~~-~~~~-~~~~~-------~-~---~~~l-~ell~~sDiv~l~~Plt~~T 211 (314)
T PRK06932 148 STLGVFG-KGCLGTEVGRLAQAL-GMKVLYA-EHKG-ASVCR-------E-G---YTPF-EEVLKQADIVTLHCPLTETT 211 (314)
T ss_pred CEEEEEC-CCHHHHHHHHHHhcC-CCEEEEE-CCCc-ccccc-------c-c---cCCH-HHHHHhCCEEEEcCCCChHH
Confidence 5899999 999999999999866 4676654 3221 11000 0 0 1122 2335789999999994433
Q ss_pred -----HHHHhhCCCCCEEEEc
Q 015441 143 -----QEIIKGLPKSLKIVDL 158 (406)
Q Consensus 143 -----~~~~~~l~~G~~VIDl 158 (406)
++....++.|+.+|..
T Consensus 212 ~~li~~~~l~~mk~ga~lIN~ 232 (314)
T PRK06932 212 QNLINAETLALMKPTAFLINT 232 (314)
T ss_pred hcccCHHHHHhCCCCeEEEEC
Confidence 3333445678888843
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.25 Score=49.76 Aligned_cols=82 Identities=15% Similarity=0.254 Sum_probs=50.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
++|+|+| .|.+|+.+.+.|..+ .+++.+.. +.. ...... . . ...++ ++.+.++|+|++|+|....
T Consensus 147 ~~VgIIG-~G~IG~~vA~~L~~~-G~~V~~~d-~~~-~~~~~~----~---~--~~~~l-~ell~~aDiVil~lP~t~~t 212 (330)
T PRK12480 147 MTVAIIG-TGRIGAATAKIYAGF-GATITAYD-AYP-NKDLDF----L---T--YKDSV-KEAIKDADIISLHVPANKES 212 (330)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhC-CCEEEEEe-CCh-hHhhhh----h---h--ccCCH-HHHHhcCCEEEEeCCCcHHH
Confidence 4799999 999999999999865 35666553 221 111000 0 0 01111 2335789999999997653
Q ss_pred HH-----HHhhCCCCCEEEEcC
Q 015441 143 QE-----IIKGLPKSLKIVDLS 159 (406)
Q Consensus 143 ~~-----~~~~l~~G~~VIDlS 159 (406)
.. ..+.++.|..+|+.+
T Consensus 213 ~~li~~~~l~~mk~gavlIN~a 234 (330)
T PRK12480 213 YHLFDKAMFDHVKKGAILVNAA 234 (330)
T ss_pred HHHHhHHHHhcCCCCcEEEEcC
Confidence 22 223345688899665
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.08 Score=52.62 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=25.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCC-CceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHP-YFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp-~~elv~l~ 95 (406)
.+|.|.||+|++|+.|++.|..+. ..+++.+.
T Consensus 5 k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~ 37 (324)
T TIGR03589 5 KSILITGGTGSFGKAFISRLLENYNPKKIIIYS 37 (324)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEc
Confidence 479999999999999999998653 35665553
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.25 Score=51.65 Aligned_cols=41 Identities=24% Similarity=0.469 Sum_probs=34.2
Q ss_pred cCCccEEEEECcccHHHHHHHHHHHcCCC-ceEEEEeccCcC
Q 015441 60 SEKQVRIGLLGASGYTGAEIVRLLANHPY-FGIKLMTADRKA 100 (406)
Q Consensus 60 ~~~~ikVaIvGATG~vG~eLlrlL~~hp~-~elv~l~s~~~~ 100 (406)
.+.+.||+|+|+||-||.+.++++..||+ +++++++..+..
T Consensus 54 ~~~~KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag~Ni 95 (454)
T PLN02696 54 WDGPKPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAGSNV 95 (454)
T ss_pred cCCccEEEEecCCcHhhHHHHHHHHhCccccEEEEEECCCCH
Confidence 34457999999999999999999998876 899999875543
|
|
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.1 Score=51.32 Aligned_cols=33 Identities=12% Similarity=0.340 Sum_probs=26.1
Q ss_pred ccCCccEEEEECcccHHHHHHHHHHHcCCCceEE
Q 015441 59 KSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIK 92 (406)
Q Consensus 59 ~~~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv 92 (406)
++++++||.|.||+|++|+.|++.|.++. .+++
T Consensus 5 ~~~~~~kiLVtG~tGfiG~~l~~~L~~~g-~~V~ 37 (298)
T PLN02778 5 AGSATLKFLIYGKTGWIGGLLGKLCQEQG-IDFH 37 (298)
T ss_pred CCCCCCeEEEECCCCHHHHHHHHHHHhCC-CEEE
Confidence 34555799999999999999999998653 2544
|
|
| >COG5322 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.22 Score=48.71 Aligned_cols=93 Identities=20% Similarity=0.164 Sum_probs=47.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
..|||+||+|-||..+.|.|..|-.. ++..=.+.+.--+.+...-..+. ... +..++.+.....+++|.++ ....
T Consensus 168 atvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~-~~~--i~s~d~~~~~e~i~v~vAs-~~~g 243 (351)
T COG5322 168 ATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELG-RGK--IMSLDYALPQEDILVWVAS-MPKG 243 (351)
T ss_pred CeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccC-CCe--eeeccccccccceEEEEee-cCCC
Confidence 46999999999999999999865332 33221111111112221111111 111 1223222223334444444 3344
Q ss_pred HHHHhh-CCCCCEEEEcCC
Q 015441 143 QEIIKG-LPKSLKIVDLSA 160 (406)
Q Consensus 143 ~~~~~~-l~~G~~VIDlSa 160 (406)
.++.+. ++.||.|||-.-
T Consensus 244 ~~I~pq~lkpg~~ivD~g~ 262 (351)
T COG5322 244 VEIFPQHLKPGCLIVDGGY 262 (351)
T ss_pred ceechhhccCCeEEEcCCc
Confidence 556665 688999998543
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.21 Score=49.38 Aligned_cols=85 Identities=20% Similarity=0.314 Sum_probs=50.5
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccCccccCCCcccccCccc-C---CCCCEEEEcCCC
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAVKDAD-F---SNVDAVFCCLPH 139 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~l~~~~~~~~~~~~~~~-~---~~vDvVF~al~~ 139 (406)
||+||| .|.+|+.+.+.|.++. .++.. .+++. .-..+.. . + ..... +.++ . +++|+||.|+|.
T Consensus 2 ~Ig~IG-lG~mG~~mA~~L~~~g-~~v~v-~dr~~~~~~~~~~----~-g--~~~~~--s~~~~~~~~~~advVi~~vp~ 69 (299)
T PRK12490 2 KLGLIG-LGKMGGNMAERLREDG-HEVVG-YDVNQEAVDVAGK----L-G--ITARH--SLEELVSKLEAPRTIWVMVPA 69 (299)
T ss_pred EEEEEc-ccHHHHHHHHHHHhCC-CEEEE-EECCHHHHHHHHH----C-C--CeecC--CHHHHHHhCCCCCEEEEEecC
Confidence 799999 9999999999988653 46654 34332 1111111 0 1 00011 1111 1 236999999998
Q ss_pred c-chHHHHhh----CCCCCEEEEcCCc
Q 015441 140 G-TTQEIIKG----LPKSLKIVDLSAD 161 (406)
Q Consensus 140 ~-~s~~~~~~----l~~G~~VIDlSa~ 161 (406)
. ...+.... +..|..|||.|..
T Consensus 70 ~~~~~~v~~~i~~~l~~g~ivid~st~ 96 (299)
T PRK12490 70 GEVTESVIKDLYPLLSPGDIVVDGGNS 96 (299)
T ss_pred chHHHHHHHHHhccCCCCCEEEECCCC
Confidence 7 44454432 3568899999765
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.38 Score=47.87 Aligned_cols=82 Identities=18% Similarity=0.281 Sum_probs=51.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.+|+|+| .|.+|+++.++|..+ .+++.++. ++..... .. . ...++ ++.+.++|+|++++|....
T Consensus 123 ktvgIiG-~G~IG~~vA~~l~af-G~~V~~~~-r~~~~~~-------~~--~--~~~~l-~ell~~aDiv~~~lp~t~~T 187 (303)
T PRK06436 123 KSLGILG-YGGIGRRVALLAKAF-GMNIYAYT-RSYVNDG-------IS--S--IYMEP-EDIMKKSDFVLISLPLTDET 187 (303)
T ss_pred CEEEEEC-cCHHHHHHHHHHHHC-CCEEEEEC-CCCcccC-------cc--c--ccCCH-HHHHhhCCEEEECCCCCchh
Confidence 5799999 999999999988765 46776654 2211000 00 0 01111 2234689999999996544
Q ss_pred -----HHHHhhCCCCCEEEEcCC
Q 015441 143 -----QEIIKGLPKSLKIVDLSA 160 (406)
Q Consensus 143 -----~~~~~~l~~G~~VIDlSa 160 (406)
.+....++.|..+|+.|-
T Consensus 188 ~~li~~~~l~~mk~ga~lIN~sR 210 (303)
T PRK06436 188 RGMINSKMLSLFRKGLAIINVAR 210 (303)
T ss_pred hcCcCHHHHhcCCCCeEEEECCC
Confidence 223344567889997653
|
|
| >TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.13 Score=52.72 Aligned_cols=38 Identities=21% Similarity=0.472 Sum_probs=33.0
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCC-ceEEEEeccCcC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPY-FGIKLMTADRKA 100 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~-~elv~l~s~~~~ 100 (406)
|.||+|+|+||-||.+.++.+..||+ +++++++..+..
T Consensus 1 Mk~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~~n~ 39 (389)
T TIGR00243 1 MKQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAGKNV 39 (389)
T ss_pred CceEEEEecChHHHHHHHHHHHhCccccEEEEEEcCCCH
Confidence 36899999999999999999998875 899999876543
|
1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis. |
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.22 Score=47.74 Aligned_cols=30 Identities=20% Similarity=0.478 Sum_probs=24.7
Q ss_pred EEEECcccHHHHHHHHHHHcCCCceEEEEec
Q 015441 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMTA 96 (406)
Q Consensus 66 VaIvGATG~vG~eLlrlL~~hp~~elv~l~s 96 (406)
|.|.||||++|+.|++.|.+.. .+++.+..
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r 30 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDG-HEVTILTR 30 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcC-CEEEEEeC
Confidence 5799999999999999988643 67877763
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.13 Score=50.32 Aligned_cols=104 Identities=19% Similarity=0.282 Sum_probs=60.3
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCC---CceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHP---YFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp---~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
|+||+|+| .|.+|+.+++.|.+.. ..++..+.. +.. .+.......+.. .....+. .+...++|+||+|+++
T Consensus 1 m~~I~iIG-~G~mG~ala~~L~~~g~~~~~~V~~~~r-~~~-~~~~~l~~~~~~--~~~~~~~-~e~~~~aDvVilavpp 74 (277)
T PRK06928 1 MEKIGFIG-YGSMADMIATKLLETEVATPEEIILYSS-SKN-EHFNQLYDKYPT--VELADNE-AEIFTKCDHSFICVPP 74 (277)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCCCCCcccEEEEeC-CcH-HHHHHHHHHcCC--eEEeCCH-HHHHhhCCEEEEecCH
Confidence 46899999 9999999999887543 245555543 221 111111000100 0000111 1123578999999998
Q ss_pred cchHHHHhh----CCCCCEEEEcCCcccCCCccchhhhcC
Q 015441 140 GTTQEIIKG----LPKSLKIVDLSADFRLRDVSEYEEWYG 175 (406)
Q Consensus 140 ~~s~~~~~~----l~~G~~VIDlSa~fRl~~~~~~~~~y~ 175 (406)
....++++. +..++.||++.+-..++ ..++|.+
T Consensus 75 ~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~---~l~~~~~ 111 (277)
T PRK06928 75 LAVLPLLKDCAPVLTPDRHVVSIAAGVSLD---DLLEITP 111 (277)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEECCCCCHH---HHHHHcC
Confidence 877776653 34577888887765443 4566654
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.26 Score=50.77 Aligned_cols=86 Identities=17% Similarity=0.200 Sum_probs=50.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|+|+| .|.+|+.+++.|..+ .+++.+. ++......... .. + .....++ ++.+.++|+|++++|.....
T Consensus 200 ktVGIVG-~G~IG~~vA~~L~af-G~~V~~~-d~~~~~~~~~~---~~-g--~~~~~~l-~ell~~sDvV~l~lPlt~~T 269 (386)
T PLN03139 200 KTVGTVG-AGRIGRLLLQRLKPF-NCNLLYH-DRLKMDPELEK---ET-G--AKFEEDL-DAMLPKCDVVVINTPLTEKT 269 (386)
T ss_pred CEEEEEe-ecHHHHHHHHHHHHC-CCEEEEE-CCCCcchhhHh---hc-C--ceecCCH-HHHHhhCCEEEEeCCCCHHH
Confidence 5799999 999999999999865 4676554 33211111100 00 0 0001112 22346899999999954432
Q ss_pred -H-----HHhhCCCCCEEEEcC
Q 015441 144 -E-----IIKGLPKSLKIVDLS 159 (406)
Q Consensus 144 -~-----~~~~l~~G~~VIDlS 159 (406)
. ....++.|..+|+.+
T Consensus 270 ~~li~~~~l~~mk~ga~lIN~a 291 (386)
T PLN03139 270 RGMFNKERIAKMKKGVLIVNNA 291 (386)
T ss_pred HHHhCHHHHhhCCCCeEEEECC
Confidence 2 223346788999654
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.19 Score=50.36 Aligned_cols=32 Identities=25% Similarity=0.419 Sum_probs=26.2
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+.+|.|.||||++|+.|++.|.++. .+++.+.
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~ 41 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERG-YTVKGTV 41 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEe
Confidence 4579999999999999999998653 4666654
|
|
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.12 Score=50.18 Aligned_cols=30 Identities=23% Similarity=0.464 Sum_probs=24.0
Q ss_pred EEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 66 VaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|.|.||||++|+.|++.|.+....++..+.
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~ 30 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDILVVD 30 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEEEEe
Confidence 579999999999999999876644565543
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.22 Score=49.84 Aligned_cols=71 Identities=20% Similarity=0.283 Sum_probs=42.8
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccCcCCccccccccCccccCCCcccc-c-C---cccCCCCCEEEEcCC
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRKAGQSIGSVFPHLISQDLPTMVA-V-K---DADFSNVDAVFCCLP 138 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~-~-~---~~~~~~vDvVF~al~ 138 (406)
||+|+||+|.||..+.-.|...+.. |++.+--....|..++-.|-. ... .+.. . + .+++.++|+|+.+.+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~---~~~-~i~~~~~~~~~~~~~~daDivvitaG 76 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIP---TAA-SVKGFSGEEGLENALKGADVVVIPAG 76 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCC---cCc-eEEEecCCCchHHHcCCCCEEEEeCC
Confidence 6999999999999999988765543 566653222334433322211 001 1111 1 1 246688999999887
Q ss_pred C
Q 015441 139 H 139 (406)
Q Consensus 139 ~ 139 (406)
.
T Consensus 77 ~ 77 (312)
T TIGR01772 77 V 77 (312)
T ss_pred C
Confidence 5
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.39 Score=48.73 Aligned_cols=90 Identities=16% Similarity=0.198 Sum_probs=51.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCcccccc--cc-----CccccCCCcccccCcccCCCCCEEEEc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSV--FP-----HLISQDLPTMVAVKDADFSNVDAVFCC 136 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v--~p-----~l~~~~~~~~~~~~~~~~~~vDvVF~a 136 (406)
.+|+|+| .|.+|+++.+.|..+. +++.++. +.. ....... +| .+..... ...++ ++.+.++|+|+++
T Consensus 160 ktvGIiG-~G~IG~~vA~~l~afG-~~V~~~d-r~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~L-~ell~~aDiVvl~ 233 (347)
T PLN02928 160 KTVFILG-YGAIGIELAKRLRPFG-VKLLATR-RSW-TSEPEDGLLIPNGDVDDLVDEKG-GHEDI-YEFAGEADIVVLC 233 (347)
T ss_pred CEEEEEC-CCHHHHHHHHHHhhCC-CEEEEEC-CCC-ChhhhhhhccccccccccccccC-cccCH-HHHHhhCCEEEEC
Confidence 5899999 9999999999998764 5776653 221 1000000 00 0000000 01122 2335689999999
Q ss_pred CCCcch------HHHHhhCCCCCEEEEcC
Q 015441 137 LPHGTT------QEIIKGLPKSLKIVDLS 159 (406)
Q Consensus 137 l~~~~s------~~~~~~l~~G~~VIDlS 159 (406)
+|.... ++....++.|..+|+.+
T Consensus 234 lPlt~~T~~li~~~~l~~Mk~ga~lINva 262 (347)
T PLN02928 234 CTLTKETAGIVNDEFLSSMKKGALLVNIA 262 (347)
T ss_pred CCCChHhhcccCHHHHhcCCCCeEEEECC
Confidence 995433 33334456788999665
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.66 Score=46.02 Aligned_cols=93 Identities=19% Similarity=0.272 Sum_probs=50.4
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccC-----cCCccccccccCccccCCCcccccCcccCCCCCEEEEc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR-----KAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCC 136 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~-----~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~a 136 (406)
+++||+|+| .|.+|..+...|.... .++..+.... ..|..+................ +.++....|+||+|
T Consensus 4 ~~m~I~IiG-~GaiG~~lA~~L~~~g-~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~vila 79 (313)
T PRK06249 4 ETPRIGIIG-TGAIGGFYGAMLARAG-FDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYR--SAEDMPPCDWVLVG 79 (313)
T ss_pred cCcEEEEEC-CCHHHHHHHHHHHHCC-CeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEc--chhhcCCCCEEEEE
Confidence 346899999 9999999999998642 4555554221 1122222111110000011011 12233578999999
Q ss_pred CCCcchHHHHhh----CCCCCEEEEc
Q 015441 137 LPHGTTQEIIKG----LPKSLKIVDL 158 (406)
Q Consensus 137 l~~~~s~~~~~~----l~~G~~VIDl 158 (406)
++.....+..+. +..+..||.+
T Consensus 80 vK~~~~~~~~~~l~~~~~~~~~iv~l 105 (313)
T PRK06249 80 LKTTANALLAPLIPQVAAPDAKVLLL 105 (313)
T ss_pred ecCCChHhHHHHHhhhcCCCCEEEEe
Confidence 997766655543 3344556644
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.24 Score=47.69 Aligned_cols=102 Identities=18% Similarity=0.310 Sum_probs=56.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCC---CceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHP---YFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp---~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
+||+++| .|..|..+++.|.+.. ..++....+++. .+ ..... .+ + ....... .+...++|+||+|++..
T Consensus 1 ~kI~~IG-~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~-~~-~~~~~-~~-g--~~~~~~~-~e~~~~aDvVil~v~~~ 72 (266)
T PLN02688 1 FRVGFIG-AGKMAEAIARGLVASGVVPPSRISTADDSNP-AR-RDVFQ-SL-G--VKTAASN-TEVVKSSDVIILAVKPQ 72 (266)
T ss_pred CeEEEEC-CcHHHHHHHHHHHHCCCCCcceEEEEeCCCH-HH-HHHHH-Hc-C--CEEeCCh-HHHHhcCCEEEEEECcH
Confidence 4799999 9999999999887532 235544323321 11 11100 01 1 1111111 12235789999999877
Q ss_pred chHHHHhh----CCCCCEEEEcCCcccCCCccchhhhcCC
Q 015441 141 TTQEIIKG----LPKSLKIVDLSADFRLRDVSEYEEWYGQ 176 (406)
Q Consensus 141 ~s~~~~~~----l~~G~~VIDlSa~fRl~~~~~~~~~y~~ 176 (406)
...+.... +..+..||+..+.. +.+..++|.+.
T Consensus 73 ~~~~vl~~l~~~~~~~~~iIs~~~g~---~~~~l~~~~~~ 109 (266)
T PLN02688 73 VVKDVLTELRPLLSKDKLLVSVAAGI---TLADLQEWAGG 109 (266)
T ss_pred HHHHHHHHHHhhcCCCCEEEEecCCC---cHHHHHHHcCC
Confidence 66666543 34567788775543 33445566543
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.18 Score=54.69 Aligned_cols=33 Identities=18% Similarity=0.376 Sum_probs=26.6
Q ss_pred cEEEEECcccHHHHHHHHHHHc-CCCceEEEEec
Q 015441 64 VRIGLLGASGYTGAEIVRLLAN-HPYFGIKLMTA 96 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~-hp~~elv~l~s 96 (406)
+||.|.||||++|+.|++.|.. ....+++.+..
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R 34 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVR 34 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 3799999999999999999885 34567776653
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=92.31 E-value=0.21 Score=49.11 Aligned_cols=33 Identities=30% Similarity=0.384 Sum_probs=25.9
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
...+|.|.||+|++|+.|++.|.+.. .+++.+.
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G-~~V~~~~ 36 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRG-YTINATV 36 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCC-CEEEEEE
Confidence 34689999999999999999998653 4555543
|
|
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.16 Score=48.77 Aligned_cols=30 Identities=33% Similarity=0.386 Sum_probs=24.4
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
||.|+||||++|+.|++.|.+. ..+++.+.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~-g~~v~~~~ 30 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPE-GRVVVALT 30 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhc-CCEEEEeC
Confidence 5899999999999999998865 34665553
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.25 Score=49.60 Aligned_cols=96 Identities=9% Similarity=0.075 Sum_probs=54.8
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-ccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
..+++|+| +|..|+..++.|.....++-+.+.+++... +.+.+....+ +......... .+...++|+|++|++...
T Consensus 128 ~~~lgiiG-~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~-g~~v~~~~~~-~eav~~aDiVitaT~s~~ 204 (325)
T TIGR02371 128 SSVLGIIG-AGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDY-EVPVRAATDP-REAVEGCDILVTTTPSRK 204 (325)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhh-CCcEEEeCCH-HHHhccCCEEEEecCCCC
Confidence 46899999 999999998988766667777777654321 1111100001 1011111111 223478999999998643
Q ss_pred hHHHHhhCCCCCEEEEcCCc
Q 015441 142 TQEIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 142 s~~~~~~l~~G~~VIDlSa~ 161 (406)
-.-....++.|+.|.-.+++
T Consensus 205 P~~~~~~l~~g~~v~~vGs~ 224 (325)
T TIGR02371 205 PVVKADWVSEGTHINAIGAD 224 (325)
T ss_pred cEecHHHcCCCCEEEecCCC
Confidence 21112235778887766654
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.28 Score=48.47 Aligned_cols=86 Identities=20% Similarity=0.306 Sum_probs=49.9
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-H
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT-Q 143 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s-~ 143 (406)
||++|| .|..|..+.+.|.+.. +++... ++...-..+.. .+ ....... .+...++|+||+|++.... .
T Consensus 2 ~Ig~IG-lG~MG~~ma~~L~~~G-~~v~v~-~~~~~~~~~~~-----~g--~~~~~s~-~~~~~~advVi~~v~~~~~v~ 70 (292)
T PRK15059 2 KLGFIG-LGIMGTPMAINLARAG-HQLHVT-TIGPVADELLS-----LG--AVSVETA-RQVTEASDIIFIMVPDTPQVE 70 (292)
T ss_pred eEEEEc-cCHHHHHHHHHHHHCC-CeEEEE-eCCHhHHHHHH-----cC--CeecCCH-HHHHhcCCEEEEeCCChHHHH
Confidence 799999 9999999999888653 455433 32211111110 01 1001111 1123578999999997743 3
Q ss_pred HHH-------hhCCCCCEEEEcCCc
Q 015441 144 EII-------KGLPKSLKIVDLSAD 161 (406)
Q Consensus 144 ~~~-------~~l~~G~~VIDlSa~ 161 (406)
+.. +.+..|..|||.|..
T Consensus 71 ~v~~~~~g~~~~~~~g~ivvd~sT~ 95 (292)
T PRK15059 71 EVLFGENGCTKASLKGKTIVDMSSI 95 (292)
T ss_pred HHHcCCcchhccCCCCCEEEECCCC
Confidence 322 123457889999875
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.47 Score=48.72 Aligned_cols=81 Identities=17% Similarity=0.266 Sum_probs=50.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc--
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT-- 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~-- 141 (406)
.+|||+| .|.||+.+.+.|..+ .+++.... +..... . ... .+.++ ++.+.++|+|++++|-..
T Consensus 117 ktvGIIG-~G~IG~~vA~~l~a~-G~~V~~~d-p~~~~~--~--------~~~-~~~~L-~ell~~sDiI~lh~PLt~~g 181 (378)
T PRK15438 117 RTVGIVG-VGNVGRRLQARLEAL-GIKTLLCD-PPRADR--G--------DEG-DFRSL-DELVQEADILTFHTPLFKDG 181 (378)
T ss_pred CEEEEEC-cCHHHHHHHHHHHHC-CCEEEEEC-Cccccc--c--------ccc-ccCCH-HHHHhhCCEEEEeCCCCCCc
Confidence 5899999 999999999999876 46765553 211100 0 000 01122 233468999999998544
Q ss_pred ---h-----HHHHhhCCCCCEEEEcC
Q 015441 142 ---T-----QEIIKGLPKSLKIVDLS 159 (406)
Q Consensus 142 ---s-----~~~~~~l~~G~~VIDlS 159 (406)
+ .+....++.|..+|..|
T Consensus 182 ~~~T~~li~~~~l~~mk~gailIN~a 207 (378)
T PRK15438 182 PYKTLHLADEKLIRSLKPGAILINAC 207 (378)
T ss_pred ccccccccCHHHHhcCCCCcEEEECC
Confidence 2 33444556788888544
|
|
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.35 Score=47.95 Aligned_cols=94 Identities=10% Similarity=0.072 Sum_probs=56.5
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
+++.||.|.|.||-.|+.+++.|.++..-.+..++-++.. ..+. .-.-++.+.++ ++.- ++|+++.+.|..
T Consensus 6 ~~~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~-~~v~------G~~~y~sv~dl-p~~~-~~DlAvi~vp~~ 76 (291)
T PRK05678 6 NKDTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGG-TTVL------GLPVFNTVAEA-VEAT-GANASVIYVPPP 76 (291)
T ss_pred cCCCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCC-CeEe------CeeccCCHHHH-hhcc-CCCEEEEEcCHH
Confidence 3457999999999999999998887654344455433101 1111 00111112222 1100 289999999998
Q ss_pred chHHHHhhC-CCCC--EEEEcCCcccC
Q 015441 141 TTQEIIKGL-PKSL--KIVDLSADFRL 164 (406)
Q Consensus 141 ~s~~~~~~l-~~G~--~VIDlSa~fRl 164 (406)
...+.++.+ ++|+ .|| .|+-|.+
T Consensus 77 ~v~~~l~e~~~~gvk~avI-~s~Gf~~ 102 (291)
T PRK05678 77 FAADAILEAIDAGIDLIVC-ITEGIPV 102 (291)
T ss_pred HHHHHHHHHHHCCCCEEEE-ECCCCCH
Confidence 888877765 6665 345 5666754
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=92.16 E-value=0.25 Score=49.12 Aligned_cols=73 Identities=19% Similarity=0.289 Sum_probs=40.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccCc---CCccccccccC-ccccCCCcccccCcccCCCCCEEEEcCC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRK---AGQSIGSVFPH-LISQDLPTMVAVKDADFSNVDAVFCCLP 138 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~~---~G~~i~~v~p~-l~~~~~~~~~~~~~~~~~~vDvVF~al~ 138 (406)
+||+|+|+ |.+|..++..|...... +++.+ ++.. .|...+..+.. +.. .. .+..-+.+++.++|+||+|.+
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~-D~~~~~~~g~a~dl~~~~~~~~-~~-~i~~~d~~~l~~aDiViita~ 76 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLV-DINKAKAEGEAMDLAHGTPFVK-PV-RIYAGDYADCKGADVVVITAG 76 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEE-ECCchhhhhHHHHHHccccccC-Ce-EEeeCCHHHhCCCCEEEEccC
Confidence 38999995 99999999999876544 45544 4322 12111111100 000 00 111122345679999999988
Q ss_pred Cc
Q 015441 139 HG 140 (406)
Q Consensus 139 ~~ 140 (406)
..
T Consensus 77 ~~ 78 (308)
T cd05292 77 AN 78 (308)
T ss_pred CC
Confidence 53
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.56 Score=47.26 Aligned_cols=101 Identities=20% Similarity=0.359 Sum_probs=60.7
Q ss_pred ccEEEEECcccHHHHHHHHHHHc----CCCce-EEE--EeccCcCC--cccccc----ccC---ccccCCCcc-ccc-C-
Q 015441 63 QVRIGLLGASGYTGAEIVRLLAN----HPYFG-IKL--MTADRKAG--QSIGSV----FPH---LISQDLPTM-VAV-K- 123 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~----hp~~e-lv~--l~s~~~~G--~~i~~v----~p~---l~~~~~~~~-~~~-~- 123 (406)
..||+|+| +|..|..+.+++.+ ||.++ .+. +...+-.| .++.++ |-+ |++.++|.- ... |
T Consensus 21 ~~kV~ivG-sGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl 99 (372)
T KOG2711|consen 21 PLKVCIVG-SGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDL 99 (372)
T ss_pred ceEEEEEc-cChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchH
Confidence 47999999 99999999999973 55433 112 22233333 233322 111 233333321 111 1
Q ss_pred cccCCCCCEEEEcCCCcchHHHHhhC----CCCCEEEEcCCcccC
Q 015441 124 DADFSNVDAVFCCLPHGTTQEIIKGL----PKSLKIVDLSADFRL 164 (406)
Q Consensus 124 ~~~~~~vDvVF~al~~~~s~~~~~~l----~~G~~VIDlSa~fRl 164 (406)
.+...++|++++.+||.....+.+.+ +.++..|+++--|-.
T Consensus 100 ~ea~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~ 144 (372)
T KOG2711|consen 100 VEAAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEV 144 (372)
T ss_pred HHHhccCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeecceec
Confidence 11235899999999999988877653 467888988766543
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=92.00 E-value=0.2 Score=50.16 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=26.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+||.|.|||||+|+.|++.|.+.. .+++++.
T Consensus 16 ~~vlVtGatGfiG~~lv~~L~~~g-~~V~~~d 46 (348)
T PRK15181 16 KRWLITGVAGFIGSGLLEELLFLN-QTVIGLD 46 (348)
T ss_pred CEEEEECCccHHHHHHHHHHHHCC-CEEEEEe
Confidence 589999999999999999998764 5776664
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=91.97 E-value=0.21 Score=52.31 Aligned_cols=78 Identities=12% Similarity=0.089 Sum_probs=43.9
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcC-------CCc-eEEEEec--cCcCCccccccccCcc-ccCCCcccccCcccCCC
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANH-------PYF-GIKLMTA--DRKAGQSIGSVFPHLI-SQDLPTMVAVKDADFSN 129 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~h-------p~~-elv~l~s--~~~~G~~i~~v~p~l~-~~~~~~~~~~~~~~~~~ 129 (406)
.+.+||+|+||+|.||..++-.|... +.. ||+.+-- ....|..++-.+..+. ..++. +..-+.+++.+
T Consensus 98 ~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~-i~~~~ye~~kd 176 (444)
T PLN00112 98 KKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVS-IGIDPYEVFQD 176 (444)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceE-EecCCHHHhCc
Confidence 34589999999999999999988754 332 5554421 1122333332221100 01111 11112346788
Q ss_pred CCEEEEcCCC
Q 015441 130 VDAVFCCLPH 139 (406)
Q Consensus 130 vDvVF~al~~ 139 (406)
+|+|+++.+.
T Consensus 177 aDiVVitAG~ 186 (444)
T PLN00112 177 AEWALLIGAK 186 (444)
T ss_pred CCEEEECCCC
Confidence 9999888775
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=91.95 E-value=0.18 Score=51.88 Aligned_cols=74 Identities=18% Similarity=0.236 Sum_probs=42.4
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCC------ceEEEE-ecc---CcCCccccccc---cCccccCCCcccccCcccCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPY------FGIKLM-TAD---RKAGQSIGSVF---PHLISQDLPTMVAVKDADFSN 129 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~------~elv~l-~s~---~~~G~~i~~v~---p~l~~~~~~~~~~~~~~~~~~ 129 (406)
..||+|+||+|.||..++-.|..... +.|+++ .+. ...|+.++-.+ |.+. .+. +..-+.+++.+
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~--~v~-i~~~~y~~~kd 120 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLR--EVS-IGIDPYEVFED 120 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcC--ceE-EecCCHHHhCC
Confidence 58999999999999999998875333 345445 232 22233332222 1111 111 11112345678
Q ss_pred CCEEEEcCCC
Q 015441 130 VDAVFCCLPH 139 (406)
Q Consensus 130 vDvVF~al~~ 139 (406)
+|+|+++.+.
T Consensus 121 aDIVVitAG~ 130 (387)
T TIGR01757 121 ADWALLIGAK 130 (387)
T ss_pred CCEEEECCCC
Confidence 8998887764
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.21 Score=49.88 Aligned_cols=31 Identities=23% Similarity=0.412 Sum_probs=25.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||||++|+.|++.|.+.. .+++.+.
T Consensus 6 k~iLVTGatGfIGs~l~~~L~~~G-~~V~~~~ 36 (351)
T PLN02650 6 ETVCVTGASGFIGSWLVMRLLERG-YTVRATV 36 (351)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHCC-CEEEEEE
Confidence 479999999999999999998753 4666654
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.2 Score=49.32 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=25.8
Q ss_pred EEEEECcccHHHHHHHHHHHcCC-CceEEEEe
Q 015441 65 RIGLLGASGYTGAEIVRLLANHP-YFGIKLMT 95 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp-~~elv~l~ 95 (406)
+|.|.||||++|+.|++.|.++. ..+++++.
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~ 32 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLV 32 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEE
Confidence 48899999999999999998763 35777775
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.21 Score=53.32 Aligned_cols=94 Identities=20% Similarity=0.284 Sum_probs=52.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT- 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~- 141 (406)
.+|+|+| +|-+|+.+++.|..+..-++..+ ++.. ....+...++.... ....+.+. .+.+.++|+||.|++...
T Consensus 267 kkVlVIG-AG~mG~~~a~~L~~~G~~~V~V~-nRs~era~~La~~~~g~~i-~~~~~~dl-~~al~~aDVVIsAT~s~~p 342 (519)
T PLN00203 267 ARVLVIG-AGKMGKLLVKHLVSKGCTKMVVV-NRSEERVAALREEFPDVEI-IYKPLDEM-LACAAEADVVFTSTSSETP 342 (519)
T ss_pred CEEEEEe-CHHHHHHHHHHHHhCCCCeEEEE-eCCHHHHHHHHHHhCCCce-EeecHhhH-HHHHhcCCEEEEccCCCCC
Confidence 5899999 59999999999987654455444 3321 11122211111000 00001111 122468999999987543
Q ss_pred --hHHHHhhCC----C-C--CEEEEcCCc
Q 015441 142 --TQEIIKGLP----K-S--LKIVDLSAD 161 (406)
Q Consensus 142 --s~~~~~~l~----~-G--~~VIDlSa~ 161 (406)
..++++.+. . + ..+||++=+
T Consensus 343 vI~~e~l~~~~~~~~~~~~~~~~IDLAvP 371 (519)
T PLN00203 343 LFLKEHVEALPPASDTVGGKRLFVDISVP 371 (519)
T ss_pred eeCHHHHHHhhhcccccCCCeEEEEeCCC
Confidence 456665541 1 2 378999865
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.62 Score=46.50 Aligned_cols=79 Identities=13% Similarity=0.244 Sum_probs=49.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.+|+|+| +|.||+++.+++..+ .+++.+.. +. ++.... .+. ..++ ++.+..+|+|.+++|....
T Consensus 146 ktvGIiG-~G~IG~~vA~~~~~f-gm~V~~~d-~~--~~~~~~--------~~~-~~~l-~ell~~sDvv~lh~Plt~~T 210 (311)
T PRK08410 146 KKWGIIG-LGTIGKRVAKIAQAF-GAKVVYYS-TS--GKNKNE--------EYE-RVSL-EELLKTSDIISIHAPLNEKT 210 (311)
T ss_pred CEEEEEC-CCHHHHHHHHHHhhc-CCEEEEEC-CC--cccccc--------Cce-eecH-HHHhhcCCEEEEeCCCCchh
Confidence 5799999 999999999999866 46776553 21 111010 010 1122 2345789999999995433
Q ss_pred -----HHHHhhCCCCCEEEE
Q 015441 143 -----QEIIKGLPKSLKIVD 157 (406)
Q Consensus 143 -----~~~~~~l~~G~~VID 157 (406)
++....++.|..+|-
T Consensus 211 ~~li~~~~~~~Mk~~a~lIN 230 (311)
T PRK08410 211 KNLIAYKELKLLKDGAILIN 230 (311)
T ss_pred hcccCHHHHHhCCCCeEEEE
Confidence 333444567888883
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.88 E-value=0.54 Score=47.05 Aligned_cols=78 Identities=19% Similarity=0.258 Sum_probs=49.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.+|+|+| .|.||+++.+.|..+ .+++.+.. +. +.... . + ...+ ++.+..+|+|.+++|....
T Consensus 149 ktvgIiG-~G~IG~~vA~~l~~f-gm~V~~~~-~~--~~~~~-----~---~---~~~l-~ell~~sDiv~l~lPlt~~T 211 (317)
T PRK06487 149 KTLGLLG-HGELGGAVARLAEAF-GMRVLIGQ-LP--GRPAR-----P---D---RLPL-DELLPQVDALTLHCPLTEHT 211 (317)
T ss_pred CEEEEEC-CCHHHHHHHHHHhhC-CCEEEEEC-CC--CCccc-----c---c---ccCH-HHHHHhCCEEEECCCCChHH
Confidence 5799999 999999999999876 46776553 21 11000 0 0 1112 2345789999999995433
Q ss_pred -----HHHHhhCCCCCEEEEc
Q 015441 143 -----QEIIKGLPKSLKIVDL 158 (406)
Q Consensus 143 -----~~~~~~l~~G~~VIDl 158 (406)
++....++.|..+|-.
T Consensus 212 ~~li~~~~~~~mk~ga~lIN~ 232 (317)
T PRK06487 212 RHLIGARELALMKPGALLINT 232 (317)
T ss_pred hcCcCHHHHhcCCCCeEEEEC
Confidence 3333445678888833
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.88 E-value=0.18 Score=50.45 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=26.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+||.|.||+|++|+.|++.|.++. .+++.+.
T Consensus 11 ~~vLVtG~~GfIG~~l~~~L~~~G-~~V~~~~ 41 (353)
T PLN02896 11 GTYCVTGATGYIGSWLVKLLLQRG-YTVHATL 41 (353)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEe
Confidence 489999999999999999998764 4666654
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=91.72 E-value=0.21 Score=50.15 Aligned_cols=95 Identities=16% Similarity=0.224 Sum_probs=53.2
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
..+++|+| +|..|+..++.|.....++-+.+.+++.. .+.+........+.+....... ++.+.++|+|+.||+...
T Consensus 129 ~~~v~iiG-aG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~-~~av~~aDiVvtaT~s~~ 206 (326)
T TIGR02992 129 SSVVAIFG-AGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDP-RAAMSGADIIVTTTPSET 206 (326)
T ss_pred CcEEEEEC-CCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCH-HHHhccCCEEEEecCCCC
Confidence 35899999 89999999998874334555566655431 1111111100001111001111 223468999999998743
Q ss_pred hHHHH--hhCCCCCEEEEcCCc
Q 015441 142 TQEII--KGLPKSLKIVDLSAD 161 (406)
Q Consensus 142 s~~~~--~~l~~G~~VIDlSa~ 161 (406)
.+. ..++.|..|.+.+++
T Consensus 207 --p~i~~~~l~~g~~i~~vg~~ 226 (326)
T TIGR02992 207 --PILHAEWLEPGQHVTAMGSD 226 (326)
T ss_pred --cEecHHHcCCCcEEEeeCCC
Confidence 222 235678888877665
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.23 Score=42.22 Aligned_cols=82 Identities=17% Similarity=0.260 Sum_probs=46.8
Q ss_pred EEEEECcc---cHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 65 RIGLLGAS---GYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 65 kVaIvGAT---G~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
+|||+||+ +..|..+++.|.++ .+++..++-+. +.+. + .+.+..+++ .-..+|++++|++...
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~-G~~v~~Vnp~~---~~i~-------G--~~~y~sl~e-~p~~iDlavv~~~~~~ 67 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAA-GYEVYPVNPKG---GEIL-------G--IKCYPSLAE-IPEPIDLAVVCVPPDK 67 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHT-T-EEEEESTTC---SEET-------T--EE-BSSGGG-CSST-SEEEE-S-HHH
T ss_pred EEEEEcccCCCCChHHHHHHHHHhC-CCEEEEECCCc---eEEC-------c--EEeeccccC-CCCCCCEEEEEcCHHH
Confidence 69999998 77899999988874 36888886432 1111 1 111222211 1257899999999999
Q ss_pred hHHHHhhC-CCCC-EEEEcCC
Q 015441 142 TQEIIKGL-PKSL-KIVDLSA 160 (406)
Q Consensus 142 s~~~~~~l-~~G~-~VIDlSa 160 (406)
..++++.+ +.|+ .|+=.++
T Consensus 68 ~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 68 VPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp HHHHHHHHHHHT-SEEEE-TT
T ss_pred HHHHHHHHHHcCCCEEEEEcc
Confidence 98888765 4454 2333555
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.68 E-value=0.3 Score=49.69 Aligned_cols=73 Identities=12% Similarity=0.238 Sum_probs=42.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccC--cCCccccccccC-ccccCCCcccc-cCcccCCCCCEEEEcCC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADR--KAGQSIGSVFPH-LISQDLPTMVA-VKDADFSNVDAVFCCLP 138 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~--~~G~~i~~v~p~-l~~~~~~~~~~-~~~~~~~~vDvVF~al~ 138 (406)
.||+|+|| |.||..++-.|...+-. |++.+--.. ..|...+-.|.. +... . .+.. .+.+++.++|+|+++.+
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~-~-~i~~~~dy~~~~daDiVVitAG 114 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPR-T-KILASTDYAVTAGSDLCIVTAG 114 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCC-C-EEEeCCCHHHhCCCCEEEECCC
Confidence 59999995 99999999988865554 565554222 234333322211 1111 1 1221 12345679999999877
Q ss_pred C
Q 015441 139 H 139 (406)
Q Consensus 139 ~ 139 (406)
.
T Consensus 115 ~ 115 (350)
T PLN02602 115 A 115 (350)
T ss_pred C
Confidence 4
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=91.62 E-value=0.27 Score=49.11 Aligned_cols=73 Identities=12% Similarity=0.170 Sum_probs=41.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccC--cCCccccccccC-ccccCCCcccc-cCcccCCCCCEEEEcCC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADR--KAGQSIGSVFPH-LISQDLPTMVA-VKDADFSNVDAVFCCLP 138 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~--~~G~~i~~v~p~-l~~~~~~~~~~-~~~~~~~~vDvVF~al~ 138 (406)
.||+|+|| |.||..++-.|...+-. |++.+--.+ ..|...+--|.. +... ..+.. -+.+++.++|+|+.+.+
T Consensus 4 ~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~--~~v~~~~dy~~~~~adivvitaG 80 (312)
T cd05293 4 NKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKN--PKIEADKDYSVTANSKVVIVTAG 80 (312)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCC--CEEEECCCHHHhCCCCEEEECCC
Confidence 59999995 99999999988865554 566653222 123322211110 1110 11221 22345789999999877
Q ss_pred C
Q 015441 139 H 139 (406)
Q Consensus 139 ~ 139 (406)
.
T Consensus 81 ~ 81 (312)
T cd05293 81 A 81 (312)
T ss_pred C
Confidence 4
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=91.56 E-value=0.39 Score=48.27 Aligned_cols=31 Identities=23% Similarity=0.431 Sum_probs=24.4
Q ss_pred EEEEECcccHHHHHHHHHHHcCCC------ceEEEEe
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPY------FGIKLMT 95 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~------~elv~l~ 95 (406)
||+|+||+|.||..++..|....- ++++.+-
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD 37 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLD 37 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEe
Confidence 699999999999999998875333 3576663
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.54 E-value=0.43 Score=51.08 Aligned_cols=85 Identities=14% Similarity=0.205 Sum_probs=49.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.+|+|+| .|.+|+++.+.|..+. +++.++. +......... + + ......+ ++.+.++|+|++|+|....
T Consensus 139 ktvgIiG-~G~IG~~vA~~l~~fG-~~V~~~d-~~~~~~~~~~----~-g--~~~~~~l-~ell~~aDvV~l~lPlt~~T 207 (525)
T TIGR01327 139 KTLGVIG-LGRIGSIVAKRAKAFG-MKVLAYD-PYISPERAEQ----L-G--VELVDDL-DELLARADFITVHTPLTPET 207 (525)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCC-CEEEEEC-CCCChhHHHh----c-C--CEEcCCH-HHHHhhCCEEEEccCCChhh
Confidence 5799999 9999999999998763 5766653 2111111110 1 0 1001111 2334689999999995532
Q ss_pred -----HHHHhhCCCCCEEEEcC
Q 015441 143 -----QEIIKGLPKSLKIVDLS 159 (406)
Q Consensus 143 -----~~~~~~l~~G~~VIDlS 159 (406)
.+....++.|+.+|+.+
T Consensus 208 ~~li~~~~l~~mk~ga~lIN~a 229 (525)
T TIGR01327 208 RGLIGAEELAKMKKGVIIVNCA 229 (525)
T ss_pred ccCcCHHHHhcCCCCeEEEEcC
Confidence 23333345677777654
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.49 E-value=0.56 Score=48.23 Aligned_cols=81 Identities=17% Similarity=0.293 Sum_probs=49.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc--
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT-- 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~-- 141 (406)
.+|+|+| .|.+|+.+.+.|..+ .+++.+. ++..... . .... +..+ ++.+.++|+|.+++|-..
T Consensus 117 ktvGIIG-~G~IG~~va~~l~a~-G~~V~~~-Dp~~~~~--~------~~~~---~~~l-~ell~~aDiV~lh~Plt~~g 181 (381)
T PRK00257 117 RTYGVVG-AGHVGGRLVRVLRGL-GWKVLVC-DPPRQEA--E------GDGD---FVSL-ERILEECDVISLHTPLTKEG 181 (381)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHC-CCEEEEE-CCccccc--c------cCcc---ccCH-HHHHhhCCEEEEeCcCCCCc
Confidence 5799999 999999999999865 3566554 3211100 0 0001 1112 223468999999999643
Q ss_pred ---h-----HHHHhhCCCCCEEEEcC
Q 015441 142 ---T-----QEIIKGLPKSLKIVDLS 159 (406)
Q Consensus 142 ---s-----~~~~~~l~~G~~VIDlS 159 (406)
+ .+....++.|..+|..|
T Consensus 182 ~~~T~~li~~~~l~~mk~gailIN~a 207 (381)
T PRK00257 182 EHPTRHLLDEAFLASLRPGAWLINAS 207 (381)
T ss_pred cccccccCCHHHHhcCCCCeEEEECC
Confidence 2 33344456788888544
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.26 Score=49.15 Aligned_cols=73 Identities=16% Similarity=0.270 Sum_probs=41.0
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccC--cCCcccccccc-Cccc-cCCCcccccCcccCCCCCEEEEcCCC
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADR--KAGQSIGSVFP-HLIS-QDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~--~~G~~i~~v~p-~l~~-~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
||+|+|| |.||..++-.|...+.+ |++.+--.. ..|...+-.|- .+.. .... +..-+.+++.++|+|+.+.+.
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~-i~~~~y~~~~~aDivvitaG~ 78 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTK-IRAGDYDDCADADIIVITAGP 78 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEE-EEECCHHHhCCCCEEEECCCC
Confidence 6999996 99999999988866655 566553221 22333322220 0110 0111 111123456788988888774
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.33 E-value=0.3 Score=47.88 Aligned_cols=99 Identities=14% Similarity=0.254 Sum_probs=52.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC---C-ccccccccCcc-ccCC----------Cccc-ccC-ccc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA---G-QSIGSVFPHLI-SQDL----------PTMV-AVK-DAD 126 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~---G-~~i~~v~p~l~-~~~~----------~~~~-~~~-~~~ 126 (406)
.||+|+| +|..|..+...|+.+. .++..+.-+... . +.+....+.+. ...+ ..+. ..+ .+.
T Consensus 4 ~kIaViG-aG~mG~~iA~~la~~G-~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a 81 (287)
T PRK08293 4 KNVTVAG-AGVLGSQIAFQTAFHG-FDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA 81 (287)
T ss_pred cEEEEEC-CCHHHHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence 5899999 7999999999998653 355444321110 0 01100000000 0000 0010 111 123
Q ss_pred CCCCCEEEEcCCCcch--HHHHhh----CCCCCEEEEcCCcccC
Q 015441 127 FSNVDAVFCCLPHGTT--QEIIKG----LPKSLKIVDLSADFRL 164 (406)
Q Consensus 127 ~~~vDvVF~al~~~~s--~~~~~~----l~~G~~VIDlSa~fRl 164 (406)
+.++|+||+|.|.... +++... +..++.+.++++.++.
T Consensus 82 ~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~ 125 (287)
T PRK08293 82 VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLP 125 (287)
T ss_pred hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCH
Confidence 4789999999997643 333332 3456777788887654
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=91.21 E-value=0.55 Score=47.15 Aligned_cols=83 Identities=17% Similarity=0.240 Sum_probs=49.2
Q ss_pred cEEEEECcccHHHHHHHHHHH-cCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLA-NHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~-~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
.+|+|+| .|.||+++.+.|. .+ .+++.+. ++... ..... .+ +.. ..++ ++.+.++|+|.+++|-...
T Consensus 146 ktvGIiG-~G~IG~~va~~l~~~f-gm~V~~~-~~~~~-~~~~~---~~-~~~---~~~l-~ell~~sDvv~lh~plt~~ 213 (323)
T PRK15409 146 KTLGIVG-MGRIGMALAQRAHFGF-NMPILYN-ARRHH-KEAEE---RF-NAR---YCDL-DTLLQESDFVCIILPLTDE 213 (323)
T ss_pred CEEEEEc-ccHHHHHHHHHHHhcC-CCEEEEE-CCCCc-hhhHH---hc-CcE---ecCH-HHHHHhCCEEEEeCCCChH
Confidence 5799999 9999999999987 66 4676543 33211 10000 00 000 1122 2335789999999995443
Q ss_pred ------HHHHhhCCCCCEEEEc
Q 015441 143 ------QEIIKGLPKSLKIVDL 158 (406)
Q Consensus 143 ------~~~~~~l~~G~~VIDl 158 (406)
++....++.|..+|..
T Consensus 214 T~~li~~~~l~~mk~ga~lIN~ 235 (323)
T PRK15409 214 THHLFGAEQFAKMKSSAIFINA 235 (323)
T ss_pred HhhccCHHHHhcCCCCeEEEEC
Confidence 3333445678888843
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=91.12 E-value=0.23 Score=44.24 Aligned_cols=95 Identities=20% Similarity=0.410 Sum_probs=51.8
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccC---ccccCCCc-c-cccC-cccCCCCCEEEEcC
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPH---LISQDLPT-M-VAVK-DADFSNVDAVFCCL 137 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~---l~~~~~~~-~-~~~~-~~~~~~vDvVF~al 137 (406)
||+|+| .|-.|..+...|..+. .++... +++. .-..+...+.+ +.+..++. + ...| ++.+.++|++++++
T Consensus 1 KI~ViG-aG~~G~AlA~~la~~g-~~V~l~-~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Iiiav 77 (157)
T PF01210_consen 1 KIAVIG-AGNWGTALAALLADNG-HEVTLW-GRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAV 77 (157)
T ss_dssp EEEEES-SSHHHHHHHHHHHHCT-EEEEEE-TSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S
T ss_pred CEEEEC-cCHHHHHHHHHHHHcC-CEEEEE-eccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecc
Confidence 799999 9999999999999765 455444 3332 10111111110 11111111 1 1112 22357899999999
Q ss_pred CCcchHHHHhhC----CCCCEEEEcCCcc
Q 015441 138 PHGTTQEIIKGL----PKSLKIVDLSADF 162 (406)
Q Consensus 138 ~~~~s~~~~~~l----~~G~~VIDlSa~f 162 (406)
|...-+++++.+ ..+..+|-++.-|
T Consensus 78 Ps~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 78 PSQAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp -GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cHHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 988777777553 4677888777666
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.09 E-value=0.48 Score=50.74 Aligned_cols=84 Identities=14% Similarity=0.269 Sum_probs=49.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.+|+|+| .|.+|+++.+.|..+ .+++.++. +......... + + .. ...+ ++.+.++|+|++|+|....
T Consensus 141 ktvgIiG-~G~IG~~vA~~l~~f-G~~V~~~d-~~~~~~~~~~----~-g--~~-~~~l-~ell~~aDiV~l~lP~t~~t 208 (526)
T PRK13581 141 KTLGIIG-LGRIGSEVAKRAKAF-GMKVIAYD-PYISPERAAQ----L-G--VE-LVSL-DELLARADFITLHTPLTPET 208 (526)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhC-CCEEEEEC-CCCChhHHHh----c-C--CE-EEcH-HHHHhhCCEEEEccCCChHh
Confidence 5799999 999999999999866 35766553 2111000000 0 1 10 1112 2335689999999996533
Q ss_pred -----HHHHhhCCCCCEEEEcC
Q 015441 143 -----QEIIKGLPKSLKIVDLS 159 (406)
Q Consensus 143 -----~~~~~~l~~G~~VIDlS 159 (406)
.+....++.|..+|+.|
T Consensus 209 ~~li~~~~l~~mk~ga~lIN~a 230 (526)
T PRK13581 209 RGLIGAEELAKMKPGVRIINCA 230 (526)
T ss_pred hcCcCHHHHhcCCCCeEEEECC
Confidence 33333445677777654
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=91.07 E-value=0.18 Score=51.19 Aligned_cols=36 Identities=17% Similarity=0.350 Sum_probs=28.1
Q ss_pred ccCCccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 59 KSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 59 ~~~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
...++.+|.|.||+|++|+.|++.|.++ ..+++.+.
T Consensus 49 ~~~~~k~VLVTGatGfIG~~lv~~L~~~-G~~V~~~~ 84 (367)
T PLN02686 49 ADAEARLVCVTGGVSFLGLAIVDRLLRH-GYSVRIAV 84 (367)
T ss_pred cCCCCCEEEEECCchHHHHHHHHHHHHC-CCEEEEEe
Confidence 3344568999999999999999999865 35666554
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.98 E-value=0.42 Score=46.25 Aligned_cols=93 Identities=15% Similarity=0.225 Sum_probs=52.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCC---ceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPY---FGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~---~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
+||+|+| .|..|+.+++.|.+... .++.. .+++. .+ .. . . ...+ ..+...++|+||+|++..
T Consensus 4 mkI~iIG-~G~mG~ai~~~l~~~~~~~~~~i~~-~~~~~-~~-~~-----~---~--~~~~-~~~~~~~~D~Vilavkp~ 68 (260)
T PTZ00431 4 IRVGFIG-LGKMGSALAYGIENSNIIGKENIYY-HTPSK-KN-TP-----F---V--YLQS-NEELAKTCDIIVLAVKPD 68 (260)
T ss_pred CEEEEEC-ccHHHHHHHHHHHhCCCCCcceEEE-ECCCh-hc-CC-----e---E--EeCC-hHHHHHhCCEEEEEeCHH
Confidence 4899999 99999999999886432 13433 33221 11 10 0 0 0101 011235789999999988
Q ss_pred chHHHHhhC----CCCCEEEEcCCcccCCCccchhhhcC
Q 015441 141 TTQEIIKGL----PKSLKIVDLSADFRLRDVSEYEEWYG 175 (406)
Q Consensus 141 ~s~~~~~~l----~~G~~VIDlSa~fRl~~~~~~~~~y~ 175 (406)
...++++.+ ..+..|-|.++ .. .+..++|.+
T Consensus 69 ~~~~vl~~i~~~l~~~~iIS~~aG-i~---~~~l~~~~~ 103 (260)
T PTZ00431 69 LAGKVLLEIKPYLGSKLLISICGG-LN---LKTLEEMVG 103 (260)
T ss_pred HHHHHHHHHHhhccCCEEEEEeCC-cc---HHHHHHHcC
Confidence 877777553 23344445555 32 334455543
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.97 E-value=0.72 Score=45.63 Aligned_cols=72 Identities=14% Similarity=0.307 Sum_probs=50.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc--c
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG--T 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~--~ 141 (406)
.+|.|+|+++.+|+-|..+|.+. ...++...++. .++ .+...++|+||.|+|.. +
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~-gatVtv~~s~t---------------~~l-------~~~~~~ADIVIsAvg~p~~i 215 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQK-NASVTILHSRS---------------KDM-------ASYLKDADVIVSAVGKPGLV 215 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHC-CCeEEEEeCCc---------------hhH-------HHHHhhCCEEEECCCCCccc
Confidence 58999999999999999999865 35555554321 011 11235789999999864 2
Q ss_pred hHHHHhhCCCCCEEEEcCCc
Q 015441 142 TQEIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 142 s~~~~~~l~~G~~VIDlSa~ 161 (406)
..+ .++.|..|||.+..
T Consensus 216 ~~~---~vk~gavVIDvGi~ 232 (286)
T PRK14175 216 TKD---VVKEGAVIIDVGNT 232 (286)
T ss_pred CHH---HcCCCcEEEEcCCC
Confidence 232 25678999999875
|
|
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=90.93 E-value=0.28 Score=48.33 Aligned_cols=31 Identities=29% Similarity=0.398 Sum_probs=26.8
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEecc
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD 97 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~ 97 (406)
||.|.|++|++|.+|.++|. +..+++++...
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~ 32 (281)
T COG1091 2 KILITGANGQLGTELRRALP--GEFEVIATDRA 32 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC--CCceEEeccCc
Confidence 59999999999999999987 77888887643
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=90.89 E-value=0.45 Score=47.61 Aligned_cols=72 Identities=18% Similarity=0.265 Sum_probs=41.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccC--cCCccccccc--cCccccCCCcccccCcccCCCCCEEEEcCC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADR--KAGQSIGSVF--PHLISQDLPTMVAVKDADFSNVDAVFCCLP 138 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~--~~G~~i~~v~--p~l~~~~~~~~~~~~~~~~~~vDvVF~al~ 138 (406)
.||+|+|| |.||..+.-+|...+.. |++.+--.. ..|...+-.+ +.+ . .. .+..-+.+++.++|+|+++.+
T Consensus 7 ~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~-~-~~-~i~~~~~~~~~~adivIitag 82 (315)
T PRK00066 7 NKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFT-S-PT-KIYAGDYSDCKDADLVVITAG 82 (315)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcccc-C-Ce-EEEeCCHHHhCCCCEEEEecC
Confidence 58999997 99999999999877766 565553211 1232222111 111 0 11 111112345678999988876
Q ss_pred C
Q 015441 139 H 139 (406)
Q Consensus 139 ~ 139 (406)
.
T Consensus 83 ~ 83 (315)
T PRK00066 83 A 83 (315)
T ss_pred C
Confidence 4
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.83 E-value=0.51 Score=47.24 Aligned_cols=75 Identities=16% Similarity=0.293 Sum_probs=41.7
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccC--cCCccccccccC-ccccCCCcccc-cCcccCCCCCEEEEcCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR--KAGQSIGSVFPH-LISQDLPTMVA-VKDADFSNVDAVFCCLP 138 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~--~~G~~i~~v~p~-l~~~~~~~~~~-~~~~~~~~vDvVF~al~ 138 (406)
..||+|+|| |.+|..+..+|..+...+++.+--.. ..|..++..+.. +.+... .+.. .+.+++.++|+|+++.+
T Consensus 5 ~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~-~i~~~~d~~~l~~ADiVVitag 82 (319)
T PTZ00117 5 RKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNI-NILGTNNYEDIKDSDVVVITAG 82 (319)
T ss_pred CcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCe-EEEeCCCHHHhCCCCEEEECCC
Confidence 469999996 99999999988866545655543221 123333221110 001011 1111 12235678999999885
Q ss_pred C
Q 015441 139 H 139 (406)
Q Consensus 139 ~ 139 (406)
.
T Consensus 83 ~ 83 (319)
T PTZ00117 83 V 83 (319)
T ss_pred C
Confidence 3
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=90.78 E-value=0.38 Score=49.99 Aligned_cols=91 Identities=15% Similarity=0.261 Sum_probs=51.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-ccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
.+|+|+| +|-+|+.+++.|.....-++. +.+++..- ..+...+ .. ........ .+.+.++|+||.|++....
T Consensus 183 ~~vlViG-aG~iG~~~a~~L~~~G~~~V~-v~~r~~~ra~~la~~~---g~-~~~~~~~~-~~~l~~aDvVI~aT~s~~~ 255 (423)
T PRK00045 183 KKVLVIG-AGEMGELVAKHLAEKGVRKIT-VANRTLERAEELAEEF---GG-EAIPLDEL-PEALAEADIVISSTGAPHP 255 (423)
T ss_pred CEEEEEC-chHHHHHHHHHHHHCCCCeEE-EEeCCHHHHHHHHHHc---CC-cEeeHHHH-HHHhccCCEEEECCCCCCc
Confidence 5899999 699999999999865433444 44433211 1111111 11 11011111 1224578999999985443
Q ss_pred ---HHHHhh-C-C---CCCEEEEcCCc
Q 015441 143 ---QEIIKG-L-P---KSLKIVDLSAD 161 (406)
Q Consensus 143 ---~~~~~~-l-~---~G~~VIDlSa~ 161 (406)
.++++. + . .+..+||++-+
T Consensus 256 ~i~~~~l~~~~~~~~~~~~vviDla~P 282 (423)
T PRK00045 256 IIGKGMVERALKARRHRPLLLVDLAVP 282 (423)
T ss_pred EEcHHHHHHHHhhccCCCeEEEEeCCC
Confidence 445543 2 1 24689999864
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.64 E-value=1.8 Score=43.19 Aligned_cols=73 Identities=16% Similarity=0.256 Sum_probs=50.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|+|+|.+|.+|+-+..+|.+. ..++....++.. ++ .+...++|+||.|+|..
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~-gatVtv~~~~t~---------------~l-------~e~~~~ADIVIsavg~~--- 213 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQA-HCSVTVVHSRST---------------DA-------KALCRQADIVVAAVGRP--- 213 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHC-CCEEEEECCCCC---------------CH-------HHHHhcCCEEEEecCCh---
Confidence 58999998899999999999865 355555533211 11 11225789999999865
Q ss_pred HHHhh--CCCCCEEEEcCCcc
Q 015441 144 EIIKG--LPKSLKIVDLSADF 162 (406)
Q Consensus 144 ~~~~~--l~~G~~VIDlSa~f 162 (406)
+.++. +..|..|||.|-.+
T Consensus 214 ~~v~~~~ik~GaiVIDvgin~ 234 (301)
T PRK14194 214 RLIDADWLKPGAVVIDVGINR 234 (301)
T ss_pred hcccHhhccCCcEEEEecccc
Confidence 23322 46799999998654
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=90.63 E-value=0.35 Score=45.91 Aligned_cols=93 Identities=18% Similarity=0.240 Sum_probs=53.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEecc---------------CcCCc--------cccccccCccccCCCccc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD---------------RKAGQ--------SIGSVFPHLISQDLPTMV 120 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~---------------~~~G~--------~i~~v~p~l~~~~~~~~~ 120 (406)
.||+|+| .|-+|.++++.|.....-++..+-.+ .+.|+ .+....|+.....++ .
T Consensus 22 ~~VlivG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~--~ 98 (228)
T cd00757 22 ARVLVVG-AGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYN--E 98 (228)
T ss_pred CcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEec--c
Confidence 5899999 78889999999986544444444211 12332 122223322111111 0
Q ss_pred ccC----cccCCCCCEEEEcCCCcchHHHHhh-C-CCCCEEEEcC
Q 015441 121 AVK----DADFSNVDAVFCCLPHGTTQEIIKG-L-PKSLKIVDLS 159 (406)
Q Consensus 121 ~~~----~~~~~~vDvVF~al~~~~s~~~~~~-l-~~G~~VIDlS 159 (406)
.++ .+.+.++|+||.|++...++.++.. + ..++.+|+.+
T Consensus 99 ~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g 143 (228)
T cd00757 99 RLDAENAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGA 143 (228)
T ss_pred eeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 111 1224689999999998877665543 2 5678888753
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=90.57 E-value=0.3 Score=48.68 Aligned_cols=93 Identities=15% Similarity=0.260 Sum_probs=50.1
Q ss_pred ccEEEEECcccHHHHHHHHHHHc-CCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLAN-HPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~-hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
..+|+|+| +|..|+..++.+.. ++..++. +.+++.. .+.+...+... +......... .+...++|+|++|++..
T Consensus 125 ~~~v~iiG-~G~~a~~~~~al~~~~~~~~V~-V~~Rs~~~a~~~a~~~~~~-g~~~~~~~~~-~~av~~aDIVi~aT~s~ 200 (314)
T PRK06141 125 ASRLLVVG-TGRLASLLALAHASVRPIKQVR-VWGRDPAKAEALAAELRAQ-GFDAEVVTDL-EAAVRQADIISCATLST 200 (314)
T ss_pred CceEEEEC-CcHHHHHHHHHHHhcCCCCEEE-EEcCCHHHHHHHHHHHHhc-CCceEEeCCH-HHHHhcCCEEEEeeCCC
Confidence 35899999 89999999986654 6644454 4444321 11111111000 1011111111 22346899999999866
Q ss_pred chHHHH--hhCCCCCEEEEcCCcc
Q 015441 141 TTQEII--KGLPKSLKIVDLSADF 162 (406)
Q Consensus 141 ~s~~~~--~~l~~G~~VIDlSa~f 162 (406)
. .+. ..+..|. +||..+.+
T Consensus 201 ~--pvl~~~~l~~g~-~i~~ig~~ 221 (314)
T PRK06141 201 E--PLVRGEWLKPGT-HLDLVGNF 221 (314)
T ss_pred C--CEecHHHcCCCC-EEEeeCCC
Confidence 2 222 2356677 67777754
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=90.45 E-value=0.67 Score=46.42 Aligned_cols=166 Identities=13% Similarity=0.113 Sum_probs=84.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc-ch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG-TT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~-~s 142 (406)
.+|+|+| .|..|+.+++.|.++- ++++....+.. +...... .. + +. .... .+...++|+||+|+|.. ..
T Consensus 4 kkIgiIG-~G~mG~AiA~~L~~sG-~~Viv~~~~~~--~~~~~a~-~~-G--v~-~~s~-~ea~~~ADiVvLaVpp~~~~ 73 (314)
T TIGR00465 4 KTVAIIG-YGSQGHAQALNLRDSG-LNVIVGLRKGG--ASWKKAT-ED-G--FK-VGTV-EEAIPQADLIMNLLPDEVQH 73 (314)
T ss_pred CEEEEEe-EcHHHHHHHHHHHHCC-CeEEEEECcCh--hhHHHHH-HC-C--CE-ECCH-HHHHhcCCEEEEeCCcHhHH
Confidence 4799999 9999999999998653 35433332221 1111110 00 1 11 1111 22346799999999987 33
Q ss_pred HHHHh----hCCCCCEEEEcCCcccCCCccchhhhcC----CCCCCccchhhhhccccccchhhccC----CcEE-ecCC
Q 015441 143 QEIIK----GLPKSLKIVDLSADFRLRDVSEYEEWYG----QPHIAPDLQKEAVYGLTEISREDIKN----ARLV-ANPG 209 (406)
Q Consensus 143 ~~~~~----~l~~G~~VIDlSa~fRl~~~~~~~~~y~----~~~~~Pevn~~~vyglpE~~~~~i~~----~~iV-anPg 209 (406)
..+.+ .+..|. +|..++-|.++.. +.|.+ +-.+.|......+ |+.+.+ ..++ .+++
T Consensus 74 ~~v~~ei~~~l~~g~-iVs~aaG~~i~~~---~~~~~~~~~VvrvmPn~p~~~v-------r~~~~~G~G~~~l~a~~~~ 142 (314)
T TIGR00465 74 EVYEAEIQPLLKEGK-TLGFSHGFNIHFV---QIVPPKDVDVVMVAPKGPGTLV-------REEYKEGFGVPTLIAVEQD 142 (314)
T ss_pred HHHHHHHHhhCCCCc-EEEEeCCccHhhc---cccCCCCCcEEEECCCCCcHHH-------HHHhhcCCCeeEEEEecCC
Confidence 33332 234454 7778877766542 22322 1123343322211 222221 1344 6777
Q ss_pred ChHHHHHHHHHHHHHccCC-----------CcceEEEEEeeccCccCcchhh
Q 015441 210 CYPTSIQLPLVPLIQANLI-----------QYRNIIIDAKSGVSGAGRGAKE 250 (406)
Q Consensus 210 C~tta~~l~L~PL~~~~l~-----------~i~~i~v~t~~gvSGaG~~~~~ 250 (406)
++..+..+++.-+..-|.. .++.=.++...+.||+|-.-+.
T Consensus 143 ~~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~ 194 (314)
T TIGR00465 143 PTGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIK 194 (314)
T ss_pred CCHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHH
Confidence 8777766666554433321 1111124555677887765444
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=90.33 E-value=0.32 Score=50.54 Aligned_cols=91 Identities=14% Similarity=0.198 Sum_probs=51.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
.+|+|+| +|-+|+.+++.|..+...+++.+ +++.. ...+... +....++ ...+ .+.+.++|+||.|++....
T Consensus 181 ~~VlViG-aG~iG~~~a~~L~~~G~~~V~v~-~rs~~ra~~la~~---~g~~~i~-~~~l-~~~l~~aDvVi~aT~s~~~ 253 (417)
T TIGR01035 181 KKALLIG-AGEMGELVAKHLLRKGVGKILIA-NRTYERAEDLAKE---LGGEAVK-FEDL-EEYLAEADIVISSTGAPHP 253 (417)
T ss_pred CEEEEEC-ChHHHHHHHHHHHHCCCCEEEEE-eCCHHHHHHHHHH---cCCeEee-HHHH-HHHHhhCCEEEECCCCCCc
Confidence 5899999 59999999999987654455544 33211 1111111 1111111 1111 1234689999999875533
Q ss_pred ---HHHHhhC-C---CCCEEEEcCCc
Q 015441 143 ---QEIIKGL-P---KSLKIVDLSAD 161 (406)
Q Consensus 143 ---~~~~~~l-~---~G~~VIDlSa~ 161 (406)
.+..+.. . ....+||++-+
T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla~P 279 (417)
T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIAVP 279 (417)
T ss_pred eEcHHHHHHHHhcCCCCeEEEEeCCC
Confidence 4555432 2 23589999854
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.32 E-value=0.89 Score=45.76 Aligned_cols=82 Identities=13% Similarity=0.177 Sum_probs=48.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.+|+|+| +|.||+++.+.|..+ .+++.+...... +...... .... ...+ ++.+..+|++.+.+|-...
T Consensus 143 kTvGIiG-~G~IG~~va~~l~af-gm~v~~~d~~~~--~~~~~~~---~~~~---~~~L-d~lL~~sDiv~lh~PlT~eT 211 (324)
T COG0111 143 KTVGIIG-LGRIGRAVAKRLKAF-GMKVIGYDPYSP--RERAGVD---GVVG---VDSL-DELLAEADILTLHLPLTPET 211 (324)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhC-CCeEEEECCCCc--hhhhccc---ccee---cccH-HHHHhhCCEEEEcCCCCcch
Confidence 5799999 999999999999876 467766643111 1111100 0000 1122 2345789999999994433
Q ss_pred HHHH-----hhCCCCCEEE
Q 015441 143 QEII-----KGLPKSLKIV 156 (406)
Q Consensus 143 ~~~~-----~~l~~G~~VI 156 (406)
+.+. .+++.|..+|
T Consensus 212 ~g~i~~~~~a~MK~gailI 230 (324)
T COG0111 212 RGLINAEELAKMKPGAILI 230 (324)
T ss_pred hcccCHHHHhhCCCCeEEE
Confidence 2222 3345688777
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.23 E-value=0.7 Score=52.26 Aligned_cols=31 Identities=26% Similarity=0.371 Sum_probs=25.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+||.|.||||++|+.|++.|..+. .+++.+.
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G-~~Vv~l~ 31 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQG-HEVVGIA 31 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc-CEEEEEE
Confidence 379999999999999999998654 4666664
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=90.23 E-value=0.41 Score=48.10 Aligned_cols=95 Identities=15% Similarity=0.156 Sum_probs=51.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
.+|+|+| +|..|+..+..|.....++-+.+.+++.. .+.+.+.+....+..+....++ ++.+.++|+|+.|++...
T Consensus 133 ~~v~IiG-aG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~-~~al~~aDiVi~aT~s~~- 209 (330)
T PRK08291 133 SRAAVIG-AGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDV-HEAVAGADIIVTTTPSEE- 209 (330)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCH-HHHHccCCEEEEeeCCCC-
Confidence 5899999 78889998888875333555566655421 1111110000001111001111 223467999999998753
Q ss_pred HHHHh--hCCCCCEEEEcCCcc
Q 015441 143 QEIIK--GLPKSLKIVDLSADF 162 (406)
Q Consensus 143 ~~~~~--~l~~G~~VIDlSa~f 162 (406)
.+.+ .++.|..|+...++.
T Consensus 210 -p~i~~~~l~~g~~v~~vg~d~ 230 (330)
T PRK08291 210 -PILKAEWLHPGLHVTAMGSDA 230 (330)
T ss_pred -cEecHHHcCCCceEEeeCCCC
Confidence 2222 356788887766653
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=90.20 E-value=0.53 Score=41.00 Aligned_cols=93 Identities=22% Similarity=0.306 Sum_probs=52.6
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEecc---------------CcCCc--------cccccccCccccCCCcccc
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD---------------RKAGQ--------SIGSVFPHLISQDLPTMVA 121 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~---------------~~~G~--------~i~~v~p~l~~~~~~~~~~ 121 (406)
||.|+| .|-+|.++++.|.....-++..+-.+ .+.|+ .+...+|+......+ ..
T Consensus 1 ~VliiG-~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~--~~ 77 (143)
T cd01483 1 RVLLVG-LGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVP--EG 77 (143)
T ss_pred CEEEEC-CCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEe--ee
Confidence 589999 58899999999986544455444222 22232 122222222111110 01
Q ss_pred cC----cccCCCCCEEEEcCCCcchHHHHh-hC-CCCCEEEEcCC
Q 015441 122 VK----DADFSNVDAVFCCLPHGTTQEIIK-GL-PKSLKIVDLSA 160 (406)
Q Consensus 122 ~~----~~~~~~vDvVF~al~~~~s~~~~~-~l-~~G~~VIDlSa 160 (406)
++ .+.+.+.|+||+|.....++.... .+ +.++.+||.+.
T Consensus 78 ~~~~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~ 122 (143)
T cd01483 78 ISEDNLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGG 122 (143)
T ss_pred cChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 11 123468999999999866655443 33 46888887654
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.17 E-value=0.77 Score=47.29 Aligned_cols=29 Identities=24% Similarity=0.441 Sum_probs=23.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|||+|+| +||+|..+..+++. ..+++.+-
T Consensus 1 mkI~VIG-lGyvGl~~A~~lA~--G~~VigvD 29 (388)
T PRK15057 1 MKITISG-TGYVGLSNGLLIAQ--NHEVVALD 29 (388)
T ss_pred CEEEEEC-CCHHHHHHHHHHHh--CCcEEEEE
Confidence 3899999 99999999987774 35666664
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=90.05 E-value=0.41 Score=44.15 Aligned_cols=30 Identities=27% Similarity=0.510 Sum_probs=23.5
Q ss_pred EEEECcccHHHHHHHHHHHcCCCceEEEEec
Q 015441 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMTA 96 (406)
Q Consensus 66 VaIvGATG~vG~eLlrlL~~hp~~elv~l~s 96 (406)
|.|+||||++|+.|++.|..... +++.+..
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~-~v~~~~~ 30 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGH-EVIVLSR 30 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTT-EEEEEES
T ss_pred EEEEccCCHHHHHHHHHHHHcCC-ccccccc
Confidence 78999999999999999986543 3445543
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=90.00 E-value=0.19 Score=45.28 Aligned_cols=96 Identities=19% Similarity=0.228 Sum_probs=52.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccC---------ccccCC--------Ccccc--cCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPH---------LISQDL--------PTMVA--VKD 124 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~---------l~~~~~--------~~~~~--~~~ 124 (406)
.||.|+| +|.+|+.-++++..++. +++.+-.....-+.....+.. ....+. +.... + .
T Consensus 21 ~~vvv~G-~G~vg~gA~~~~~~lGa-~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f-~ 97 (168)
T PF01262_consen 21 AKVVVTG-AGRVGQGAAEIAKGLGA-EVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNF-A 97 (168)
T ss_dssp -EEEEES-TSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHH-H
T ss_pred eEEEEEC-CCHHHHHHHHHHhHCCC-EEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHH-H
Confidence 7899999 99999999999998864 555553221100001111000 000000 00000 0 1
Q ss_pred ccCCCCCEEEEc-------CCCcchHHHHhhCCCCCEEEEcCCcc
Q 015441 125 ADFSNVDAVFCC-------LPHGTTQEIIKGLPKSLKIVDLSADF 162 (406)
Q Consensus 125 ~~~~~vDvVF~a-------l~~~~s~~~~~~l~~G~~VIDlSa~f 162 (406)
+.+..+|+|+.+ .|.-++++.++.+.+|..|+|+|.|.
T Consensus 98 ~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~D~ 142 (168)
T PF01262_consen 98 EFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISCDQ 142 (168)
T ss_dssp HHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTGGG
T ss_pred HHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEecC
Confidence 112467998864 45667777888888999999999874
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=89.99 E-value=0.8 Score=45.53 Aligned_cols=73 Identities=15% Similarity=0.318 Sum_probs=50.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|+|+|.+|.+|+-+.++|.+. ..+++...++.. + . .+....+|+||+|++...
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~-g~tVtv~~~rT~---------------~---l----~e~~~~ADIVIsavg~~~-- 213 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAA-NATVTIAHSRTR---------------D---L----PAVCRRADILVAAVGRPE-- 213 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhC-CCEEEEECCCCC---------------C---H----HHHHhcCCEEEEecCChh--
Confidence 58999999999999999999854 355554433221 1 1 112257899999998753
Q ss_pred HHHhh--CCCCCEEEEcCCcc
Q 015441 144 EIIKG--LPKSLKIVDLSADF 162 (406)
Q Consensus 144 ~~~~~--l~~G~~VIDlSa~f 162 (406)
+.+. +..|..|||.+-.+
T Consensus 214 -~v~~~~lk~GavVIDvGin~ 233 (296)
T PRK14188 214 -MVKGDWIKPGATVIDVGINR 233 (296)
T ss_pred -hcchheecCCCEEEEcCCcc
Confidence 3332 46799999997653
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.75 E-value=0.36 Score=47.10 Aligned_cols=100 Identities=14% Similarity=0.303 Sum_probs=52.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-C--Cc-cccccccCccccC-CC---------ccc-ccCcccCC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-A--GQ-SIGSVFPHLISQD-LP---------TMV-AVKDADFS 128 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~--G~-~i~~v~p~l~~~~-~~---------~~~-~~~~~~~~ 128 (406)
.||+|+| .|++|..+...|+.+. .+++.+..+.. . ++ .+......+.... +. .+. ..+.++..
T Consensus 4 ~kI~VIG-~G~mG~~ia~~la~~g-~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 81 (282)
T PRK05808 4 QKIGVIG-AGTMGNGIAQVCAVAG-YDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLK 81 (282)
T ss_pred cEEEEEc-cCHHHHHHHHHHHHCC-CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhc
Confidence 4899999 7999999999998764 36655531111 0 00 0000000000000 00 011 11122357
Q ss_pred CCCEEEEcCCCcch--HHHHhh----CCCCCEEEEcCCcccCC
Q 015441 129 NVDAVFCCLPHGTT--QEIIKG----LPKSLKIVDLSADFRLR 165 (406)
Q Consensus 129 ~vDvVF~al~~~~s--~~~~~~----l~~G~~VIDlSa~fRl~ 165 (406)
++|+||.|.+.... +++.+. +..++.|+.+++.....
T Consensus 82 ~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~ 124 (282)
T PRK05808 82 DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSIT 124 (282)
T ss_pred cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH
Confidence 89999999986555 344433 34567776666665443
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=89.74 E-value=2.6 Score=33.50 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=19.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANH 86 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~h 86 (406)
.+++|+|+ |.+|+-+++.|.+.
T Consensus 24 ~~v~i~G~-G~~g~~~a~~l~~~ 45 (86)
T cd05191 24 KTVVVLGA-GEVGKGIAKLLADE 45 (86)
T ss_pred CEEEEECC-CHHHHHHHHHHHHc
Confidence 57999995 99999999998865
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.68 E-value=0.75 Score=51.05 Aligned_cols=91 Identities=13% Similarity=0.194 Sum_probs=52.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCC-CceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHP-YFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp-~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
.||+|+| .|.+|+.+++.|...- ..++..+ +++. .+ ..... .+ +.......+. .+...++|+||+|+|....
T Consensus 4 ~~I~IIG-~G~mG~ala~~l~~~G~~~~V~~~-d~~~-~~-~~~a~-~~-g~~~~~~~~~-~~~~~~aDvVilavp~~~~ 76 (735)
T PRK14806 4 GRVVVIG-LGLIGGSFAKALRERGLAREVVAV-DRRA-KS-LELAV-SL-GVIDRGEEDL-AEAVSGADVIVLAVPVLAM 76 (735)
T ss_pred cEEEEEe-eCHHHHHHHHHHHhcCCCCEEEEE-ECCh-hH-HHHHH-HC-CCCCcccCCH-HHHhcCCCEEEECCCHHHH
Confidence 5899999 9999999999998543 2344443 3322 11 11100 00 1000000111 1224688999999998766
Q ss_pred HHHHhh----CCCCCEEEEcCCc
Q 015441 143 QEIIKG----LPKSLKIVDLSAD 161 (406)
Q Consensus 143 ~~~~~~----l~~G~~VIDlSa~ 161 (406)
.+.++. +..++.|+|+++-
T Consensus 77 ~~vl~~l~~~~~~~~ii~d~~sv 99 (735)
T PRK14806 77 EKVLADLKPLLSEHAIVTDVGST 99 (735)
T ss_pred HHHHHHHHHhcCCCcEEEEcCCC
Confidence 665543 3457788898873
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=89.68 E-value=0.68 Score=48.99 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=26.4
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCC-CceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHP-YFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp-~~elv~l~ 95 (406)
|+||+|+| .||+|..+.-.|+++. .++++.+-
T Consensus 1 ~m~I~ViG-~GyvGl~~A~~lA~~g~g~~V~gvD 33 (473)
T PLN02353 1 MVKICCIG-AGYVGGPTMAVIALKCPDIEVVVVD 33 (473)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 46899999 9999999999998753 56777764
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.66 E-value=0.38 Score=47.11 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=22.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l 94 (406)
.||+|+| .|.+|..+...|... ..++..+
T Consensus 2 ~~V~VIG-~G~mG~~iA~~la~~-G~~V~~~ 30 (288)
T PRK09260 2 EKLVVVG-AGVMGRGIAYVFAVS-GFQTTLV 30 (288)
T ss_pred cEEEEEC-ccHHHHHHHHHHHhC-CCcEEEE
Confidence 4799999 799999999998864 2455544
|
|
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=89.56 E-value=0.63 Score=43.24 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=23.6
Q ss_pred EEEEECcccHHHHHHHHHHHcC-CCceEEE
Q 015441 65 RIGLLGASGYTGAEIVRLLANH-PYFGIKL 93 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~h-p~~elv~ 93 (406)
+|.|.||+|.+|+++++.|.+. +...+..
T Consensus 2 ~vlItGas~gIG~~ia~~l~~~~~~~~v~~ 31 (235)
T PRK09009 2 NILIVGGSGGIGKAMVKQLLERYPDATVHA 31 (235)
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCCEEEE
Confidence 7999999999999999998864 4455543
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.48 E-value=0.73 Score=48.73 Aligned_cols=97 Identities=15% Similarity=0.191 Sum_probs=52.8
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccC--cccCCCCCEEEEcCCCc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVK--DADFSNVDAVFCCLPHG 140 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~--~~~~~~vDvVF~al~~~ 140 (406)
|.+|+|+| .|..|..|.+.|.++. +++....-..+.-+.+...... .+..+.....+. ...+.+.|+||+|++++
T Consensus 1 ~~~IgvIG-LG~MG~~lA~nL~~~G-~~V~v~dr~~~~~~~l~~~~~~-~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~ 77 (470)
T PTZ00142 1 MSDIGLIG-LAVMGQNLALNIASRG-FKISVYNRTYEKTEEFVKKAKE-GNTRVKGYHTLEELVNSLKKPRKVILLIKAG 77 (470)
T ss_pred CCEEEEEe-EhHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHhhhh-cCCcceecCCHHHHHhcCCCCCEEEEEeCCh
Confidence 35899999 9999999999998764 3555443221111111110000 010010011110 01123579999887766
Q ss_pred ch-HHH----HhhCCCCCEEEEcCCcc
Q 015441 141 TT-QEI----IKGLPKSLKIVDLSADF 162 (406)
Q Consensus 141 ~s-~~~----~~~l~~G~~VIDlSa~f 162 (406)
.. .+. .+.+..|..|||.|..+
T Consensus 78 ~~v~~vi~~l~~~L~~g~iIID~gn~~ 104 (470)
T PTZ00142 78 EAVDETIDNLLPLLEKGDIIIDGGNEW 104 (470)
T ss_pred HHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 44 333 34457789999998764
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.46 E-value=0.56 Score=47.30 Aligned_cols=99 Identities=15% Similarity=0.188 Sum_probs=52.7
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccc---cCcc-ccCCCc-ccc-cC-cccCCCCCEE
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVF---PHLI-SQDLPT-MVA-VK-DADFSNVDAV 133 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~---p~l~-~~~~~~-~~~-~~-~~~~~~vDvV 133 (406)
..++||+|+| +|..|..+...|.+.-. ++.+..+...-+.+.+.+ +.+. +..++. +.. .+ .+...++|+|
T Consensus 5 ~~~mkI~IiG-aGa~G~alA~~La~~g~--v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlV 81 (341)
T PRK12439 5 KREPKVVVLG-GGSWGTTVASICARRGP--TLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVV 81 (341)
T ss_pred cCCCeEEEEC-CCHHHHHHHHHHHHCCC--EEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEE
Confidence 3457999999 89999999999986542 333332111000111000 0111 111110 111 11 1224688999
Q ss_pred EEcCCCcchHHHHhh----CCCCCEEEEcCCcc
Q 015441 134 FCCLPHGTTQEIIKG----LPKSLKIVDLSADF 162 (406)
Q Consensus 134 F~al~~~~s~~~~~~----l~~G~~VIDlSa~f 162 (406)
|+|+|+....+.++. +..+..||.+..-+
T Consensus 82 ilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi 114 (341)
T PRK12439 82 VMGVPSHGFRGVLTELAKELRPWVPVVSLVKGL 114 (341)
T ss_pred EEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCC
Confidence 999998777666554 33455677665433
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.40 E-value=0.73 Score=43.88 Aligned_cols=31 Identities=19% Similarity=0.053 Sum_probs=25.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||||.+|+++++.|.++ ..+++.+.
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~~~-g~~V~~~~ 35 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLARA-GYRVFGTS 35 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHHHC-CCEEEEEe
Confidence 46999999999999999999876 35665554
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=89.39 E-value=0.41 Score=48.60 Aligned_cols=36 Identities=14% Similarity=0.324 Sum_probs=29.0
Q ss_pred cCCccEEEEE----CcccHHHHHHHHHHHcCCCceEEEEec
Q 015441 60 SEKQVRIGLL----GASGYTGAEIVRLLANHPYFGIKLMTA 96 (406)
Q Consensus 60 ~~~~ikVaIv----GATG~vG~eLlrlL~~hp~~elv~l~s 96 (406)
..++.||.|+ ||||++|+.|++.|.+.. .+++.+..
T Consensus 49 ~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G-~~V~~l~R 88 (378)
T PLN00016 49 AVEKKKVLIVNTNSGGHAFIGFYLAKELVKAG-HEVTLFTR 88 (378)
T ss_pred ccccceEEEEeccCCCceeEhHHHHHHHHHCC-CEEEEEec
Confidence 3455789999 999999999999998653 57777763
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=89.29 E-value=0.57 Score=48.96 Aligned_cols=34 Identities=18% Similarity=0.455 Sum_probs=27.3
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
-++++|.|.||||++|+.|++.|.+.. .+++.+.
T Consensus 45 ~~~k~VLVTGatGfIGs~Lv~~L~~~G-~~V~~~d 78 (442)
T PLN02572 45 SKKKKVMVIGGDGYCGWATALHLSKRG-YEVAIVD 78 (442)
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHHCC-CeEEEEe
Confidence 345689999999999999999998653 5676653
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.28 E-value=0.49 Score=43.44 Aligned_cols=31 Identities=32% Similarity=0.222 Sum_probs=26.1
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|+++.|.||+|++|+.+++.|.++ .+++.+.
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~--~~V~~~~ 33 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT--HTLLLGG 33 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh--CCEEEEe
Confidence 468999999999999999999876 5666664
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=89.27 E-value=0.36 Score=45.01 Aligned_cols=93 Identities=18% Similarity=0.237 Sum_probs=54.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEecc---------------CcCCc--------cccccccCccccCCCccc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD---------------RKAGQ--------SIGSVFPHLISQDLPTMV 120 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~---------------~~~G~--------~i~~v~p~l~~~~~~~~~ 120 (406)
.||.|+| .|-+|.++++.|.....-++..+-.+ ...|+ ++....|.......+ .
T Consensus 22 ~~VlviG-~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~--~ 98 (202)
T TIGR02356 22 SHVLIIG-AGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALK--E 98 (202)
T ss_pred CCEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEeh--h
Confidence 5899999 78889999999986554455554322 11221 222223322111110 0
Q ss_pred ccCc----ccCCCCCEEEEcCCCcchHHHHhh-C-CCCCEEEEcC
Q 015441 121 AVKD----ADFSNVDAVFCCLPHGTTQEIIKG-L-PKSLKIVDLS 159 (406)
Q Consensus 121 ~~~~----~~~~~vDvVF~al~~~~s~~~~~~-l-~~G~~VIDlS 159 (406)
.+++ +.+.++|+||.|+++..++.+... + ..++.+|+.+
T Consensus 99 ~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~ 143 (202)
T TIGR02356 99 RVTAENLELLINNVDLVLDCTDNFATRYLINDACVALGTPLISAA 143 (202)
T ss_pred cCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 1111 225689999999998777666643 2 5678888644
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=89.27 E-value=1.2 Score=43.44 Aligned_cols=96 Identities=17% Similarity=0.202 Sum_probs=51.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCc-ccc-CCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHL-ISQ-DLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l-~~~-~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
+||+|+| +|.+|..+...|.... .++..+..+...-..+....-.+ .+. ..+.....+..+..++|+||+|++...
T Consensus 1 m~I~IiG-~G~~G~~~a~~L~~~g-~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vila~k~~~ 78 (304)
T PRK06522 1 MKIAILG-AGAIGGLFGAALAQAG-HDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAELGPQDLVILAVKAYQ 78 (304)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCC-CeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHcCCCCEEEEeccccc
Confidence 4799999 7999999999998643 35655543111101111000000 010 000000011122367899999999876
Q ss_pred hHHHHhhC----CCCCEEEEcCCc
Q 015441 142 TQEIIKGL----PKSLKIVDLSAD 161 (406)
Q Consensus 142 s~~~~~~l----~~G~~VIDlSa~ 161 (406)
..+.++.+ ..+..||.+..-
T Consensus 79 ~~~~~~~l~~~l~~~~~iv~~~nG 102 (304)
T PRK06522 79 LPAALPSLAPLLGPDTPVLFLQNG 102 (304)
T ss_pred HHHHHHHHhhhcCCCCEEEEecCC
Confidence 66666543 345677766553
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=89.25 E-value=1.1 Score=44.29 Aligned_cols=71 Identities=17% Similarity=0.233 Sum_probs=47.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|.|+|++|.+|+-+..+|.+.-. ++....+ +. .++ .+.+.++|+|+.|+|...
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~-~t--------------~~L-------~~~~~~aDIvI~AtG~~~-- 214 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNANA-TVTICHS-RT--------------QNL-------PELVKQADIIVGAVGKPE-- 214 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeC-Cc--------------hhH-------HHHhccCCEEEEccCCCC--
Confidence 4899999999999999999986543 5544432 10 011 112357899999997332
Q ss_pred HHH--hhCCCCCEEEEcCC
Q 015441 144 EII--KGLPKSLKIVDLSA 160 (406)
Q Consensus 144 ~~~--~~l~~G~~VIDlSa 160 (406)
.. ..+..|..|||..-
T Consensus 215 -~v~~~~lk~gavViDvg~ 232 (283)
T PRK14192 215 -LIKKDWIKQGAVVVDAGF 232 (283)
T ss_pred -cCCHHHcCCCCEEEEEEE
Confidence 22 23577999999764
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=89.22 E-value=0.78 Score=44.86 Aligned_cols=90 Identities=17% Similarity=0.256 Sum_probs=51.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccCccccCCCcccccC-cccCCCCCEEEEcCCCcc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAVK-DADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~l~~~~~~~~~~~~-~~~~~~vDvVF~al~~~~ 141 (406)
.+|.|+|+ |-+|+.+++.|..+...++..+ +|+. ..+.+...+.... ... + ..+ ...+.++|+|+.|+|.+.
T Consensus 124 k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~-~R~~~~a~~l~~~~~~~~--~~~-~-~~~~~~~~~~~DivInaTp~g~ 197 (278)
T PRK00258 124 KRILILGA-GGAARAVILPLLDLGVAEITIV-NRTVERAEELAKLFGALG--KAE-L-DLELQEELADFDLIINATSAGM 197 (278)
T ss_pred CEEEEEcC-cHHHHHHHHHHHHcCCCEEEEE-eCCHHHHHHHHHHhhhcc--cee-e-cccchhccccCCEEEECCcCCC
Confidence 47999995 9999999999987664555544 3332 1112221111110 011 1 111 123467899999999876
Q ss_pred hHH-----HH-hhCCCCCEEEEcC
Q 015441 142 TQE-----II-KGLPKSLKIVDLS 159 (406)
Q Consensus 142 s~~-----~~-~~l~~G~~VIDlS 159 (406)
... +. ..+..+..|+|+.
T Consensus 198 ~~~~~~~~~~~~~l~~~~~v~Div 221 (278)
T PRK00258 198 SGELPLPPLPLSLLRPGTIVYDMI 221 (278)
T ss_pred CCCCCCCCCCHHHcCCCCEEEEee
Confidence 421 11 2245567788874
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=89.20 E-value=0.58 Score=46.59 Aligned_cols=25 Identities=28% Similarity=0.600 Sum_probs=22.2
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHP 87 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp 87 (406)
|.||.|.||||++|+.|++.|.+..
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g 25 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINET 25 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcC
Confidence 4589999999999999999998654
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=89.16 E-value=0.89 Score=48.37 Aligned_cols=95 Identities=16% Similarity=0.169 Sum_probs=55.5
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccCccc-cCCCcccccCccc----CCCCCEEEE
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLIS-QDLPTMVAVKDAD----FSNVDAVFC 135 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~l~~-~~~~~~~~~~~~~----~~~vDvVF~ 135 (406)
.+.+|++|| .|..|..+.+-|+++. +++.... +.. .-..+.+.... .+ ..+.... +..+ +.++|+||+
T Consensus 5 ~~~~IG~IG-LG~MG~~mA~nL~~~G-~~V~V~N-Rt~~k~~~l~~~~~~-~Ga~~~~~a~--s~~e~v~~l~~~dvIi~ 78 (493)
T PLN02350 5 ALSRIGLAG-LAVMGQNLALNIAEKG-FPISVYN-RTTSKVDETVERAKK-EGNLPLYGFK--DPEDFVLSIQKPRSVII 78 (493)
T ss_pred CCCCEEEEe-eHHHHHHHHHHHHhCC-CeEEEEC-CCHHHHHHHHHhhhh-cCCcccccCC--CHHHHHhcCCCCCEEEE
Confidence 345899999 9999999999998764 5665553 321 11111110000 01 0000011 1122 235999999
Q ss_pred cCCCcchHH-----HHhhCCCCCEEEEcCCcc
Q 015441 136 CLPHGTTQE-----IIKGLPKSLKIVDLSADF 162 (406)
Q Consensus 136 al~~~~s~~-----~~~~l~~G~~VIDlSa~f 162 (406)
|++.+...+ +.+.+..|..|||.|..+
T Consensus 79 ~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~ 110 (493)
T PLN02350 79 LVKAGAPVDQTIKALSEYMEPGDCIIDGGNEW 110 (493)
T ss_pred ECCCcHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 999887643 224456799999998864
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=89.11 E-value=1.4 Score=38.93 Aligned_cols=72 Identities=18% Similarity=0.231 Sum_probs=49.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|.|+|.+..+|+.|..+|.+. ..++....++. .++ .+...++|+|+++++..
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~-gatV~~~~~~t---------------~~l-------~~~v~~ADIVvsAtg~~--- 82 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRD-GATVYSCDWKT---------------IQL-------QSKVHDADVVVVGSPKP--- 82 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHC-CCEEEEeCCCC---------------cCH-------HHHHhhCCEEEEecCCC---
Confidence 58999999999999999999864 34444443211 011 11235799999999865
Q ss_pred HHHh--hCCCCCEEEEcCCc
Q 015441 144 EIIK--GLPKSLKIVDLSAD 161 (406)
Q Consensus 144 ~~~~--~l~~G~~VIDlSa~ 161 (406)
.+.+ .++.|..|||.+-.
T Consensus 83 ~~i~~~~ikpGa~Vidvg~~ 102 (140)
T cd05212 83 EKVPTEWIKPGATVINCSPT 102 (140)
T ss_pred CccCHHHcCCCCEEEEcCCC
Confidence 3332 36789999987654
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.10 E-value=0.44 Score=46.71 Aligned_cols=29 Identities=31% Similarity=0.417 Sum_probs=23.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l 94 (406)
+||.|.||+|++|+.|++.|.+.. +++.+
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g--~V~~~ 29 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG--NLIAL 29 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC--CEEEe
Confidence 379999999999999999988655 45444
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=89.10 E-value=0.45 Score=52.15 Aligned_cols=33 Identities=21% Similarity=0.449 Sum_probs=27.4
Q ss_pred ccEEEEECcccHHHHHHHHHHHcC-CCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANH-PYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~h-p~~elv~l~ 95 (406)
.+||.|.||||++|+.|++.|.+. +..+++.+.
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d 39 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRNYPDYKIVVLD 39 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEe
Confidence 368999999999999999988864 567777664
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=89.08 E-value=0.76 Score=44.65 Aligned_cols=91 Identities=13% Similarity=0.277 Sum_probs=50.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
.++.|+|+ |-+|+.++..|.... .++..+ +++.. .+.+....... + ... ....++....++|+|+.|+|.+..
T Consensus 118 k~vliiGa-Gg~g~aia~~L~~~g-~~v~v~-~R~~~~~~~la~~~~~~-~-~~~-~~~~~~~~~~~~DivInatp~gm~ 191 (270)
T TIGR00507 118 QRVLIIGA-GGAARAVALPLLKAD-CNVIIA-NRTVSKAEELAERFQRY-G-EIQ-AFSMDELPLHRVDLIINATSAGMS 191 (270)
T ss_pred CEEEEEcC-cHHHHHHHHHHHHCC-CEEEEE-eCCHHHHHHHHHHHhhc-C-ceE-EechhhhcccCccEEEECCCCCCC
Confidence 47999996 899999999998765 465544 33211 11111111000 0 000 111111223478999999998643
Q ss_pred HHH------HhhCCCCCEEEEcCC
Q 015441 143 QEI------IKGLPKSLKIVDLSA 160 (406)
Q Consensus 143 ~~~------~~~l~~G~~VIDlSa 160 (406)
... ...+..+..|+|++.
T Consensus 192 ~~~~~~~~~~~~l~~~~~v~D~~y 215 (270)
T TIGR00507 192 GNIDEPPVPAEKLKEGMVVYDMVY 215 (270)
T ss_pred CCCCCCCCCHHHcCCCCEEEEecc
Confidence 221 122456788999864
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=88.99 E-value=1.1 Score=42.69 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=29.1
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEecc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD 97 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~ 97 (406)
+.+||+|.| +|-||+.++++|.++ ..+++++++.
T Consensus 30 ~~~~v~I~G-~G~VG~~~a~~L~~~-g~~vv~v~D~ 63 (227)
T cd01076 30 AGARVAIQG-FGNVGSHAARFLHEA-GAKVVAVSDS 63 (227)
T ss_pred cCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEECC
Confidence 347999999 999999999999876 6889888764
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=88.89 E-value=0.29 Score=42.32 Aligned_cols=93 Identities=18% Similarity=0.352 Sum_probs=51.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccC---------------cCCc--------cccccccCccccCCCccc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR---------------KAGQ--------SIGSVFPHLISQDLPTMV 120 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~---------------~~G~--------~i~~v~p~l~~~~~~~~~ 120 (406)
.||+|+| .|-+|.++++.|.....-++..+-.+. +.|+ .+.+..|......++ .
T Consensus 3 ~~v~iiG-~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~--~ 79 (135)
T PF00899_consen 3 KRVLIIG-AGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIP--E 79 (135)
T ss_dssp -EEEEES-TSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEE--S
T ss_pred CEEEEEC-cCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeee--c
Confidence 5899999 888999999999865545565553221 1121 111122221111100 0
Q ss_pred ccC----cccCCCCCEEEEcCCCcchHHHHhh-C-CCCCEEEEcC
Q 015441 121 AVK----DADFSNVDAVFCCLPHGTTQEIIKG-L-PKSLKIVDLS 159 (406)
Q Consensus 121 ~~~----~~~~~~vDvVF~al~~~~s~~~~~~-l-~~G~~VIDlS 159 (406)
.++ .+.+.++|+||+|+.+..++..+.. + +.+.++|+.+
T Consensus 80 ~~~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~ 124 (135)
T PF00899_consen 80 KIDEENIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAG 124 (135)
T ss_dssp HCSHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEE
T ss_pred ccccccccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 111 1123588999999988666655543 3 5678888644
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=88.87 E-value=0.64 Score=46.23 Aligned_cols=75 Identities=19% Similarity=0.212 Sum_probs=41.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc--CCccccccccCccccCCCcccc-cCcccCCCCCEEEEcCCC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK--AGQSIGSVFPHLISQDLPTMVA-VKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~--~G~~i~~v~p~l~~~~~~~~~~-~~~~~~~~vDvVF~al~~ 139 (406)
+||+|+| +|++|..+.-.|+.+...+++.+--... .|+.++..++.........+.. .+-+++.++|+||.|.+.
T Consensus 2 ~KV~VIG-aG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~~~~aDiVIitag~ 79 (305)
T TIGR01763 2 KKISVIG-AGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYADTANSDIVVITAGL 79 (305)
T ss_pred CEEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHHhCCCCEEEEcCCC
Confidence 4899999 5999999999998754446544432111 2232222222211100001111 122235789999999884
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=88.76 E-value=0.9 Score=43.60 Aligned_cols=94 Identities=17% Similarity=0.296 Sum_probs=53.2
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEecc---------------CcCCcc--------ccccccCccccCCC-cc-
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD---------------RKAGQS--------IGSVFPHLISQDLP-TM- 119 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~---------------~~~G~~--------i~~v~p~l~~~~~~-~~- 119 (406)
||.|+| .|-+|.++++.|.....-++..+-.+ .+.|+. +.+..|........ .+
T Consensus 1 kVlvvG-~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~ 79 (234)
T cd01484 1 KVLLVG-AGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG 79 (234)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 589999 77789999999975444444443211 123321 22223322111000 01
Q ss_pred --cccCcccCCCCCEEEEcCCCcchHHHHhh-C-CCCCEEEEcC
Q 015441 120 --VAVKDADFSNVDAVFCCLPHGTTQEIIKG-L-PKSLKIVDLS 159 (406)
Q Consensus 120 --~~~~~~~~~~vDvVF~al~~~~s~~~~~~-l-~~G~~VIDlS 159 (406)
...+++.+.+.|+|+.|+....++.++.. + ..++.+||.+
T Consensus 80 ~~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g 123 (234)
T cd01484 80 PEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESG 123 (234)
T ss_pred hhhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 11112234789999999999888777654 2 5678888743
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.65 E-value=0.51 Score=48.55 Aligned_cols=100 Identities=22% Similarity=0.427 Sum_probs=58.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEecc--------C--------cCCc---cccccccCcc--ccCCCcc-cc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD--------R--------KAGQ---SIGSVFPHLI--SQDLPTM-VA 121 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~--------~--------~~G~---~i~~v~p~l~--~~~~~~~-~~ 121 (406)
.||+|+| -|=+|..+++.|+..+.-+++.+-.+ | ..|+ +++.....+. ..++... ..
T Consensus 177 ~~VaIVG-~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~I~~~~~~ 255 (393)
T PRK06153 177 QRIAIIG-LGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRGIVPHPEY 255 (393)
T ss_pred CcEEEEc-CCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCeEEEEeec
Confidence 5899999 66679999999998777777766322 1 1222 1100000000 0011000 11
Q ss_pred cCcc---cCCCCCEEEEcCCCcchHHHHh-hC-CCCCEEEEcCCcccC
Q 015441 122 VKDA---DFSNVDAVFCCLPHGTTQEIIK-GL-PKSLKIVDLSADFRL 164 (406)
Q Consensus 122 ~~~~---~~~~vDvVF~al~~~~s~~~~~-~l-~~G~~VIDlSa~fRl 164 (406)
++++ .+.++|+||.|++...++.++- .+ +.++..||.+-....
T Consensus 256 I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~l~~ 303 (393)
T PRK06153 256 IDEDNVDELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGMGLEL 303 (393)
T ss_pred CCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeeeccee
Confidence 2211 3568999999999998877664 33 568888887655433
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.63 E-value=0.5 Score=49.16 Aligned_cols=92 Identities=16% Similarity=0.167 Sum_probs=50.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
.||.|+| +|-+|+.+++.|..+..-++. +++|.. ..+.+...++. . ....+.++ .+.+.++|+||.|++...-
T Consensus 182 kkvlviG-aG~~a~~va~~L~~~g~~~I~-V~nRt~~ra~~La~~~~~--~-~~~~~~~l-~~~l~~aDiVI~aT~a~~~ 255 (414)
T PRK13940 182 KNVLIIG-AGQTGELLFRHVTALAPKQIM-LANRTIEKAQKITSAFRN--A-SAHYLSEL-PQLIKKADIIIAAVNVLEY 255 (414)
T ss_pred CEEEEEc-CcHHHHHHHHHHHHcCCCEEE-EECCCHHHHHHHHHHhcC--C-eEecHHHH-HHHhccCCEEEECcCCCCe
Confidence 5799999 688899999999877544554 444432 12222221110 1 11011111 2235689999999985432
Q ss_pred HHHHhhC-CCCCEEEEcCCc
Q 015441 143 QEIIKGL-PKSLKIVDLSAD 161 (406)
Q Consensus 143 ~~~~~~l-~~G~~VIDlSa~ 161 (406)
---.... .+...+||++=+
T Consensus 256 vi~~~~~~~~~~~~iDLavP 275 (414)
T PRK13940 256 IVTCKYVGDKPRVFIDISIP 275 (414)
T ss_pred eECHHHhCCCCeEEEEeCCC
Confidence 1101112 224578999765
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=88.57 E-value=0.42 Score=46.93 Aligned_cols=30 Identities=27% Similarity=0.550 Sum_probs=24.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.||+|+| .|.+|..+++.|+.+- .+++.+.
T Consensus 5 ~~V~vIG-~G~mG~~iA~~l~~~G-~~V~~~d 34 (295)
T PLN02545 5 KKVGVVG-AGQMGSGIAQLAAAAG-MDVWLLD 34 (295)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhcC-CeEEEEe
Confidence 5799999 8999999999998653 5665553
|
|
| >PLN02700 homoserine dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=88.54 E-value=0.58 Score=48.05 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=26.0
Q ss_pred ccEEEEECcccHHHHHHHHHHHcC--------CCceEEEEecc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANH--------PYFGIKLMTAD 97 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~h--------p~~elv~l~s~ 97 (406)
+++|+|+| .|-||+.|+++|.+. -++++++++++
T Consensus 3 ~i~i~liG-~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s 44 (377)
T PLN02700 3 KIPVLLLG-CGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDS 44 (377)
T ss_pred EEEEEEEe-cChHHHHHHHHHHHHHHHHHhcCceEEEEEEECC
Confidence 48999999 999999999998742 12456677653
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.45 E-value=0.85 Score=45.00 Aligned_cols=31 Identities=23% Similarity=0.480 Sum_probs=24.1
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+.||+|+| .|.+|..+...|.... .+++.+.
T Consensus 4 ~~~I~vIG-aG~mG~~iA~~l~~~g-~~V~~~d 34 (311)
T PRK06130 4 IQNLAIIG-AGTMGSGIAALFARKG-LQVVLID 34 (311)
T ss_pred ccEEEEEC-CCHHHHHHHHHHHhCC-CeEEEEE
Confidence 45899999 7999999999998643 4665553
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.39 E-value=0.94 Score=45.44 Aligned_cols=74 Identities=18% Similarity=0.272 Sum_probs=40.9
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc---CCccccccccC-ccccCCCcccc-cCcccCCCCCEEEEcC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK---AGQSIGSVFPH-LISQDLPTMVA-VKDADFSNVDAVFCCL 137 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~---~G~~i~~v~p~-l~~~~~~~~~~-~~~~~~~~vDvVF~al 137 (406)
+.||+|+| .|.+|..+...+......+++.+ +... .|+.++..+.. +.+... .+.. .+-+++.++|+|+.+.
T Consensus 6 ~~KI~IIG-aG~vG~~ia~~la~~gl~~i~Lv-Di~~~~~~~~~ld~~~~~~~~~~~~-~I~~~~d~~~l~~aDiVI~ta 82 (321)
T PTZ00082 6 RRKISLIG-SGNIGGVMAYLIVLKNLGDVVLF-DIVKNIPQGKALDISHSNVIAGSNS-KVIGTNNYEDIAGSDVVIVTA 82 (321)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCCCeEEEE-eCCCchhhHHHHHHHhhhhccCCCe-EEEECCCHHHhCCCCEEEECC
Confidence 35899999 69999999998876554565444 4221 23233222210 001011 1221 2224567889998887
Q ss_pred CC
Q 015441 138 PH 139 (406)
Q Consensus 138 ~~ 139 (406)
+.
T Consensus 83 g~ 84 (321)
T PTZ00082 83 GL 84 (321)
T ss_pred CC
Confidence 54
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=88.38 E-value=0.48 Score=45.74 Aligned_cols=31 Identities=29% Similarity=0.591 Sum_probs=25.6
Q ss_pred EEEEECcccHHHHHHHHHHHcC-CCceEEEEe
Q 015441 65 RIGLLGASGYTGAEIVRLLANH-PYFGIKLMT 95 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~h-p~~elv~l~ 95 (406)
||.|.||||++|+.|++.|... +..+++.+.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~ 32 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLD 32 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEec
Confidence 5899999999999999988764 456777664
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=88.36 E-value=0.97 Score=45.49 Aligned_cols=98 Identities=20% Similarity=0.370 Sum_probs=55.6
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCcccccc--cc-CccccCCCc-cc-ccC-cccCCCCCEEEEc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSV--FP-HLISQDLPT-MV-AVK-DADFSNVDAVFCC 136 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v--~p-~l~~~~~~~-~~-~~~-~~~~~~vDvVF~a 136 (406)
++||+|+| .|-.|..|...|.++- .+++...-+...-..+... .+ -|++..++. +. ..| .+..+++|+++++
T Consensus 1 ~~kI~ViG-aGswGTALA~~la~ng-~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~a 78 (329)
T COG0240 1 MMKIAVIG-AGSWGTALAKVLARNG-HEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIA 78 (329)
T ss_pred CceEEEEc-CChHHHHHHHHHHhcC-CeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEE
Confidence 46899999 8999999999999653 2333333221111111111 11 122222221 11 111 1223579999999
Q ss_pred CCCcchHHHHhhC----CCCCEEEEcCCcc
Q 015441 137 LPHGTTQEIIKGL----PKSLKIVDLSADF 162 (406)
Q Consensus 137 l~~~~s~~~~~~l----~~G~~VIDlSa~f 162 (406)
.|+..-+++++.+ ..+.++|-++--|
T Consensus 79 vPs~~~r~v~~~l~~~l~~~~~iv~~sKGi 108 (329)
T COG0240 79 VPSQALREVLRQLKPLLLKDAIIVSATKGL 108 (329)
T ss_pred CChHHHHHHHHHHhhhccCCCeEEEEeccc
Confidence 9998888877654 4567777665444
|
|
| >PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional | Back alignment and domain information |
|---|
Probab=88.20 E-value=0.74 Score=51.96 Aligned_cols=94 Identities=11% Similarity=0.137 Sum_probs=51.4
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcC--------CCceEEEEeccCcC-----CccccccccCccc-cCCCcccccCccc
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANH--------PYFGIKLMTADRKA-----GQSIGSVFPHLIS-QDLPTMVAVKDAD 126 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~h--------p~~elv~l~s~~~~-----G~~i~~v~p~l~~-~~~~~~~~~~~~~ 126 (406)
.++++|+|+| .|-||+.++++|.+. -+++++.+++++.. |-........+.. ........+ .+.
T Consensus 463 ~~~~~i~l~G-~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~ 540 (819)
T PRK09436 463 DQVLDVFVIG-VGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWREELAEAGEPFDLDRL-IRL 540 (819)
T ss_pred cccccEEEEe-cCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHHHHHhhccCCCCHHHH-HHH
Confidence 3678999999 999999999999742 14566777643221 1111000000000 000000000 000
Q ss_pred C----CCCCEEEEcCCCcchHH-HHhhCCCCCEEE
Q 015441 127 F----SNVDAVFCCLPHGTTQE-IIKGLPKSLKIV 156 (406)
Q Consensus 127 ~----~~vDvVF~al~~~~s~~-~~~~l~~G~~VI 156 (406)
. -..|+++.|++...... +..++++|+.||
T Consensus 541 ~~~~~~~~~vvvd~t~~~~~~~~~~~al~~g~~VV 575 (819)
T PRK09436 541 VKEYHLLNPVIVDCTSSQAVADQYADFLAAGFHVV 575 (819)
T ss_pred HhhcCCCCCEEEECCCChHHHHHHHHHHHcCCEEE
Confidence 1 14589999999754433 444578999999
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=88.13 E-value=1 Score=40.72 Aligned_cols=73 Identities=16% Similarity=0.297 Sum_probs=43.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|.|+|.++.+|+-|..+|.++ +..+...-+.. .++ .+....+|+|+.|.|..
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~-~atVt~~h~~T---------------~~l-------~~~~~~ADIVVsa~G~~--- 90 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNK-GATVTICHSKT---------------KNL-------QEITRRADIVVSAVGKP--- 90 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHT-T-EEEEE-TTS---------------SSH-------HHHHTTSSEEEE-SSST---
T ss_pred CEEEEECCcCCCChHHHHHHHhC-CCeEEeccCCC---------------Ccc-------cceeeeccEEeeeeccc---
Confidence 58999999999999999999876 34443332211 011 11125789999999753
Q ss_pred HHHh--hCCCCCEEEEcCCcc
Q 015441 144 EIIK--GLPKSLKIVDLSADF 162 (406)
Q Consensus 144 ~~~~--~l~~G~~VIDlSa~f 162 (406)
.+.+ .++.|+.|||.+-.+
T Consensus 91 ~~i~~~~ik~gavVIDvG~~~ 111 (160)
T PF02882_consen 91 NLIKADWIKPGAVVIDVGINY 111 (160)
T ss_dssp T-B-GGGS-TTEEEEE--CEE
T ss_pred cccccccccCCcEEEecCCcc
Confidence 3333 257799999988754
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.09 E-value=1.6 Score=45.38 Aligned_cols=82 Identities=12% Similarity=0.183 Sum_probs=50.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.+|+|+| .|.+|+++++.+..+ .+++.+.. +.. .... .+ .....++ ++.+..+|+|.+++|....
T Consensus 152 ktvGIiG-~G~IG~~vA~~~~~f-Gm~V~~~d-~~~-~~~~-------~~--~~~~~~l-~ell~~sDiVslh~Plt~~T 217 (409)
T PRK11790 152 KTLGIVG-YGHIGTQLSVLAESL-GMRVYFYD-IED-KLPL-------GN--ARQVGSL-EELLAQSDVVSLHVPETPST 217 (409)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEC-CCc-cccc-------CC--ceecCCH-HHHHhhCCEEEEcCCCChHH
Confidence 5799999 999999999999876 46776654 211 0000 00 0001122 2345789999999995443
Q ss_pred -----HHHHhhCCCCCEEEEcC
Q 015441 143 -----QEIIKGLPKSLKIVDLS 159 (406)
Q Consensus 143 -----~~~~~~l~~G~~VIDlS 159 (406)
++....++.|..+|..+
T Consensus 218 ~~li~~~~l~~mk~ga~lIN~a 239 (409)
T PRK11790 218 KNMIGAEELALMKPGAILINAS 239 (409)
T ss_pred hhccCHHHHhcCCCCeEEEECC
Confidence 22333346788888554
|
|
| >KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=88.02 E-value=1.2 Score=45.09 Aligned_cols=93 Identities=18% Similarity=0.298 Sum_probs=58.4
Q ss_pred cCCccEEEEECcccHHHHHHHHHHHcCC--CceEEEEeccCcCCccccccccC-cc-ccCCCcccccCcccCCCCCEEEE
Q 015441 60 SEKQVRIGLLGASGYTGAEIVRLLANHP--YFGIKLMTADRKAGQSIGSVFPH-LI-SQDLPTMVAVKDADFSNVDAVFC 135 (406)
Q Consensus 60 ~~~~ikVaIvGATG~vG~eLlrlL~~hp--~~elv~l~s~~~~G~~i~~v~p~-l~-~~~~~~~~~~~~~~~~~vDvVF~ 135 (406)
.++.+|+||+| -|.+++.+++.|..-| +.+++++++++ ......+.-.+ +. .+-..-++++-.+ ..+|+|+.
T Consensus 3 ~s~~ir~Gi~g-~g~ia~~f~~al~~~p~s~~~Ivava~~s-~~~A~~fAq~~~~~~~k~y~syEeLakd--~~vDvVyi 78 (351)
T KOG2741|consen 3 DSATIRWGIVG-AGRIARDFVRALHTLPESNHQIVAVADPS-LERAKEFAQRHNIPNPKAYGSYEELAKD--PEVDVVYI 78 (351)
T ss_pred CCceeEEEEee-hhHHHHHHHHHhccCcccCcEEEEEeccc-HHHHHHHHHhcCCCCCccccCHHHHhcC--CCcCEEEe
Confidence 35568999999 8999999999998877 78899999863 21111111000 00 0011112221111 47899999
Q ss_pred cCCCcchHHHHhh-CCCCCEEE
Q 015441 136 CLPHGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 136 al~~~~s~~~~~~-l~~G~~VI 156 (406)
.+++..=.+++.. +.+|+.|.
T Consensus 79 ~~~~~qH~evv~l~l~~~K~VL 100 (351)
T KOG2741|consen 79 STPNPQHYEVVMLALNKGKHVL 100 (351)
T ss_pred CCCCccHHHHHHHHHHcCCcEE
Confidence 9998877777754 56676654
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=88.01 E-value=0.85 Score=47.34 Aligned_cols=93 Identities=18% Similarity=0.300 Sum_probs=53.7
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
+..||.|+| .|-+|+-+++.|.++...++..+ .|.. ..+.+..- +.+..++ +.++ ...+.++|+||+||+..
T Consensus 177 ~~~~vlvIG-AGem~~lva~~L~~~g~~~i~Ia-NRT~erA~~La~~---~~~~~~~-l~el-~~~l~~~DvVissTsa~ 249 (414)
T COG0373 177 KDKKVLVIG-AGEMGELVAKHLAEKGVKKITIA-NRTLERAEELAKK---LGAEAVA-LEEL-LEALAEADVVISSTSAP 249 (414)
T ss_pred ccCeEEEEc-ccHHHHHHHHHHHhCCCCEEEEE-cCCHHHHHHHHHH---hCCeeec-HHHH-HHhhhhCCEEEEecCCC
Confidence 346899999 89999999999998876555444 4432 12222221 2221111 2222 22346899999998743
Q ss_pred ch---HHHHh-hCC--CCCEEEEcCCc
Q 015441 141 TT---QEIIK-GLP--KSLKIVDLSAD 161 (406)
Q Consensus 141 ~s---~~~~~-~l~--~G~~VIDlSa~ 161 (406)
.- .+..+ ++. +...+||++-+
T Consensus 250 ~~ii~~~~ve~a~~~r~~~livDiavP 276 (414)
T COG0373 250 HPIITREMVERALKIRKRLLIVDIAVP 276 (414)
T ss_pred ccccCHHHHHHHHhcccCeEEEEecCC
Confidence 22 33333 332 23478999875
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=87.93 E-value=0.62 Score=46.30 Aligned_cols=97 Identities=11% Similarity=0.075 Sum_probs=53.3
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-ccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
..+++|+| +|.-|+.-++.+..-..++-+.+.+++... ..+..-.....+.++...... ++...++|+|+.||+...
T Consensus 117 a~~l~iiG-aG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~-~eav~~aDIV~taT~s~~ 194 (301)
T PRK06407 117 VENFTIIG-SGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNA-EAALRDADTITSITNSDT 194 (301)
T ss_pred CcEEEEEC-CcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCH-HHHHhcCCEEEEecCCCC
Confidence 46899999 999999999988864456666666554211 111100000001111111111 233578999999998654
Q ss_pred hHHHHhhCCCCCEEEEcCCc
Q 015441 142 TQEIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 142 s~~~~~~l~~G~~VIDlSa~ 161 (406)
--=-...++.|..|+-..++
T Consensus 195 P~~~~~~l~pg~hV~aiGs~ 214 (301)
T PRK06407 195 PIFNRKYLGDEYHVNLAGSN 214 (301)
T ss_pred cEecHHHcCCCceEEecCCC
Confidence 21111235668887755443
|
|
| >COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=87.93 E-value=0.68 Score=47.06 Aligned_cols=37 Identities=19% Similarity=0.521 Sum_probs=32.2
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCC-ceEEEEeccCc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPY-FGIKLMTADRK 99 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~-~elv~l~s~~~ 99 (406)
|.|+.|+|+||-||.+-++++.+||+ +++++++..+.
T Consensus 1 ~k~i~iLGSTGSIG~qtLdVi~~~p~~f~vval~ag~n 38 (385)
T COG0743 1 MKKLTILGSTGSIGTQTLDVIRRNPDKFEVVALAAGKN 38 (385)
T ss_pred CceEEEEecCCchhHHHHHHHHhCCCcEEEEEEecCCc
Confidence 46899999999999999999999986 58999986543
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=87.91 E-value=1.3 Score=44.56 Aligned_cols=81 Identities=16% Similarity=0.222 Sum_probs=48.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.+++|+| +|.||+.+.+.+..+ .+++.+..-.+. ...... +... +.++ ++.+.++|++.+.+|-.-.
T Consensus 147 ktvGIiG-~GrIG~avA~r~~~F-gm~v~y~~~~~~--~~~~~~---~~~~----y~~l-~ell~~sDii~l~~Plt~~T 214 (324)
T COG1052 147 KTLGIIG-LGRIGQAVARRLKGF-GMKVLYYDRSPN--PEAEKE---LGAR----YVDL-DELLAESDIISLHCPLTPET 214 (324)
T ss_pred CEEEEEC-CCHHHHHHHHHHhcC-CCEEEEECCCCC--hHHHhh---cCce----eccH-HHHHHhCCEEEEeCCCChHH
Confidence 5799999 999999999999855 467766543221 111110 0000 1112 3345789999998884433
Q ss_pred -----HHHHhhCCCCCEEE
Q 015441 143 -----QEIIKGLPKSLKIV 156 (406)
Q Consensus 143 -----~~~~~~l~~G~~VI 156 (406)
++..+..+.|..+|
T Consensus 215 ~hLin~~~l~~mk~ga~lV 233 (324)
T COG1052 215 RHLINAEELAKMKPGAILV 233 (324)
T ss_pred hhhcCHHHHHhCCCCeEEE
Confidence 22333445677777
|
|
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=87.88 E-value=2 Score=42.48 Aligned_cols=92 Identities=12% Similarity=0.079 Sum_probs=53.9
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
+..||.|.|.||..|..+++-|...+-- +++-...+. | .++++ .-.-++.+.++ ++.. ++|+++.|.|...
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~-~--~~~v~---G~~~y~sv~dl-p~~~-~~Dlavi~vpa~~ 75 (286)
T TIGR01019 5 KDTKVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGK-G--GTTVL---GLPVFDSVKEA-VEET-GANASVIFVPAPF 75 (286)
T ss_pred CCCcEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCC-C--cceec---CeeccCCHHHH-hhcc-CCCEEEEecCHHH
Confidence 4468999999999999999988765433 444333221 0 11111 00111112222 1111 3799999999888
Q ss_pred hHHHHhhC-CCCC--EEEEcCCccc
Q 015441 142 TQEIIKGL-PKSL--KIVDLSADFR 163 (406)
Q Consensus 142 s~~~~~~l-~~G~--~VIDlSa~fR 163 (406)
..+.+..+ ++|+ .|| +|+-|.
T Consensus 76 v~~~l~e~~~~Gvk~avI-is~Gf~ 99 (286)
T TIGR01019 76 AADAIFEAIDAGIELIVC-ITEGIP 99 (286)
T ss_pred HHHHHHHHHHCCCCEEEE-ECCCCC
Confidence 87777654 6665 345 566563
|
ATP citrate lyases appear to form an outgroup. |
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=87.76 E-value=0.36 Score=48.15 Aligned_cols=95 Identities=14% Similarity=0.216 Sum_probs=44.2
Q ss_pred ccEEEEECcccHHHHHHHHHHHc-CCCceEEEEeccCcCC-ccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLAN-HPYFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~-hp~~elv~l~s~~~~G-~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
..+++|+| +|..++.-++.+.. +| ++-+.+.+++... ..+......+ +..+....+. ++...++|+|++||++.
T Consensus 128 ~~~l~viG-aG~QA~~~~~a~~~~~~-i~~v~v~~r~~~~~~~~~~~~~~~-~~~v~~~~~~-~~av~~aDii~taT~s~ 203 (313)
T PF02423_consen 128 ARTLGVIG-AGVQARWHLRALAAVRP-IKEVRVYSRSPERAEAFAARLRDL-GVPVVAVDSA-EEAVRGADIIVTATPST 203 (313)
T ss_dssp --EEEEE---SHHHHHHHHHHHHHS---SEEEEE-SSHHHHHHHHHHHHCC-CTCEEEESSH-HHHHTTSSEEEE----S
T ss_pred CceEEEEC-CCHHHHHHHHHHHHhCC-ceEEEEEccChhHHHHHHHhhccc-cccceeccch-hhhcccCCEEEEccCCC
Confidence 35799999 99999999998875 77 6666666655321 1111101011 1111111111 23457999999999977
Q ss_pred chHHHH--hhCCCCCEEEEcCCc
Q 015441 141 TTQEII--KGLPKSLKIVDLSAD 161 (406)
Q Consensus 141 ~s~~~~--~~l~~G~~VIDlSa~ 161 (406)
....+. ..++.|..|+-.+++
T Consensus 204 ~~~P~~~~~~l~~g~hi~~iGs~ 226 (313)
T PF02423_consen 204 TPAPVFDAEWLKPGTHINAIGSY 226 (313)
T ss_dssp SEEESB-GGGS-TT-EEEE-S-S
T ss_pred CCCccccHHHcCCCcEEEEecCC
Confidence 621222 246778888766653
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.65 E-value=2.6 Score=43.09 Aligned_cols=99 Identities=18% Similarity=0.400 Sum_probs=55.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCC------CceEEEEeccCc-CCcc----ccccc---cCccccCCCc-cccc-C-ccc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHP------YFGIKLMTADRK-AGQS----IGSVF---PHLISQDLPT-MVAV-K-DAD 126 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp------~~elv~l~s~~~-~G~~----i~~v~---p~l~~~~~~~-~~~~-~-~~~ 126 (406)
+||+|+| +|-.|..|...|.+.- ..++.....+.. .+++ +...+ ..+++..++. +... | .+.
T Consensus 12 ~ki~ViG-aG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea 90 (365)
T PTZ00345 12 LKVSVIG-SGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA 90 (365)
T ss_pred CeEEEEC-CCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence 6899999 8999999999998542 123333332221 1111 11000 0122222321 1111 1 123
Q ss_pred CCCCCEEEEcCCCcchHHHHhhCC------CCCEEEEcCCccc
Q 015441 127 FSNVDAVFCCLPHGTTQEIIKGLP------KSLKIVDLSADFR 163 (406)
Q Consensus 127 ~~~vDvVF~al~~~~s~~~~~~l~------~G~~VIDlSa~fR 163 (406)
..++|++++|.|+..-++.++.+. .+..||..+.-+-
T Consensus 91 v~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe 133 (365)
T PTZ00345 91 VEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGII 133 (365)
T ss_pred HhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcc
Confidence 468999999999988877776542 2446777766553
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.55 E-value=1 Score=41.81 Aligned_cols=32 Identities=16% Similarity=0.050 Sum_probs=25.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||||.+|+++++.|+++..-+++.+.
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~ 38 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLARGAAKVYAAA 38 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCcccEEEEe
Confidence 47999999999999999999876432454443
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.52 E-value=0.52 Score=44.43 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=25.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.++.|.||+|.+|+.+++.|.++. .+++.+.
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g-~~V~~~~ 42 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAG-ARVHVCD 42 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCC-CEEEEEe
Confidence 589999999999999999998765 3665554
|
|
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.49 E-value=0.5 Score=47.53 Aligned_cols=95 Identities=21% Similarity=0.331 Sum_probs=57.3
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-----CccccccccCccccCCCcccccCcccCCCCCEEEE
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-----GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFC 135 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-----G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~ 135 (406)
++...+-|.|||||+|+-+++.|..+- ... ++++|+.. +..+..-++.|. +-+...+ .+..+++++|+-
T Consensus 4 e~e~d~iiYGAtGy~G~lvae~l~~~g-~~~-aLAgRs~~kl~~l~~~LG~~~~~~p---~~~p~~~-~~~~~~~~VVln 77 (382)
T COG3268 4 EREYDIIIYGATGYAGGLVAEYLAREG-LTA-ALAGRSSAKLDALRASLGPEAAVFP---LGVPAAL-EAMASRTQVVLN 77 (382)
T ss_pred CcceeEEEEccccchhHHHHHHHHHcC-Cch-hhccCCHHHHHHHHHhcCccccccC---CCCHHHH-HHHHhcceEEEe
Confidence 445679999999999999999998542 122 55554431 112222122221 1100111 223468999999
Q ss_pred cCCCcch--HHHHhhC-CCCCEEEEcCCc
Q 015441 136 CLPHGTT--QEIIKGL-PKSLKIVDLSAD 161 (406)
Q Consensus 136 al~~~~s--~~~~~~l-~~G~~VIDlSa~ 161 (406)
|.|+..- ..++++. .+|.--.|+++.
T Consensus 78 cvGPyt~~g~plv~aC~~~GTdY~DiTGE 106 (382)
T COG3268 78 CVGPYTRYGEPLVAACAAAGTDYADITGE 106 (382)
T ss_pred ccccccccccHHHHHHHHhCCCeeecccc
Confidence 9996543 4456664 678888899984
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=87.41 E-value=2.2 Score=40.37 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=28.0
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEecc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD 97 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~ 97 (406)
..+|+|.| .|-||+.+++.|.+. ...++++++.
T Consensus 23 g~~vaIqG-fGnVG~~~a~~L~~~-G~~vV~vsD~ 55 (217)
T cd05211 23 GLTVAVQG-LGNVGWGLAKKLAEE-GGKVLAVSDP 55 (217)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHc-CCEEEEEEcC
Confidence 46999999 999999999999876 4678888764
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=87.40 E-value=1.1 Score=44.26 Aligned_cols=73 Identities=15% Similarity=0.261 Sum_probs=49.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|.|+|.++.||+-|..+|.+. ...+...-++ ..++ .+....+|+|+.|.|..
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~-~atVt~~hs~---------------t~~l-------~~~~~~ADIVV~avG~~--- 212 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQA-GATVTICHSK---------------TRDL-------AAHTRQADIVVAAVGKR--- 212 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHC-CCEEEEecCC---------------CCCH-------HHHhhhCCEEEEcCCCc---
Confidence 58999999999999999999854 3444433221 1111 12235789999999843
Q ss_pred HHHh--hCCCCCEEEEcCCcc
Q 015441 144 EIIK--GLPKSLKIVDLSADF 162 (406)
Q Consensus 144 ~~~~--~l~~G~~VIDlSa~f 162 (406)
.+.. .+..|+.|||.+-.+
T Consensus 213 ~~i~~~~ik~gavVIDVGin~ 233 (285)
T PRK14189 213 NVLTADMVKPGATVIDVGMNR 233 (285)
T ss_pred CccCHHHcCCCCEEEEccccc
Confidence 3333 357899999987653
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=87.31 E-value=1.3 Score=46.96 Aligned_cols=31 Identities=10% Similarity=0.199 Sum_probs=24.3
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEE
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l 94 (406)
+.+||+||| +|.+|..++..|+.+. +++...
T Consensus 3 ~i~kIavIG-~G~MG~~iA~~la~~G-~~V~v~ 33 (495)
T PRK07531 3 MIMKAACIG-GGVIGGGWAARFLLAG-IDVAVF 33 (495)
T ss_pred CcCEEEEEC-cCHHHHHHHHHHHhCC-CeEEEE
Confidence 345899999 9999999999998753 455544
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=87.27 E-value=0.93 Score=44.78 Aligned_cols=73 Identities=14% Similarity=0.245 Sum_probs=49.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|+|+|.+|.+|+-|..+|.+. ...++..-++. .++ .+...++|+|+.|+|....
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~-gatVtv~~s~t---------------~~l-------~~~~~~ADIVI~avg~~~~- 214 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDK-NATVTLTHSRT---------------RNL-------AEVARKADILVVAIGRGHF- 214 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHC-CCEEEEECCCC---------------CCH-------HHHHhhCCEEEEecCcccc-
Confidence 58999999999999999999864 34444331110 011 1123578999999986533
Q ss_pred HHHh--hCCCCCEEEEcCCcc
Q 015441 144 EIIK--GLPKSLKIVDLSADF 162 (406)
Q Consensus 144 ~~~~--~l~~G~~VIDlSa~f 162 (406)
.+ .+..|..|||.+-.+
T Consensus 215 --v~~~~ik~GavVIDvgin~ 233 (284)
T PRK14179 215 --VTKEFVKEGAVVIDVGMNR 233 (284)
T ss_pred --CCHHHccCCcEEEEeccee
Confidence 22 257799999987653
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=87.23 E-value=1.5 Score=44.29 Aligned_cols=91 Identities=12% Similarity=0.224 Sum_probs=51.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|+||| .|.+|+.+++.|.... ++++....+........... + .... +. .+...++|+||+|+|.....
T Consensus 18 ktIgIIG-~GsmG~AlA~~L~~sG-~~Vvv~~r~~~~s~~~A~~~----G--~~~~-s~-~eaa~~ADVVvLaVPd~~~~ 87 (330)
T PRK05479 18 KKVAIIG-YGSQGHAHALNLRDSG-VDVVVGLREGSKSWKKAEAD----G--FEVL-TV-AEAAKWADVIMILLPDEVQA 87 (330)
T ss_pred CEEEEEe-eHHHHHHHHHHHHHCC-CEEEEEECCchhhHHHHHHC----C--CeeC-CH-HHHHhcCCEEEEcCCHHHHH
Confidence 5799999 9999999999987653 46544332211111111000 1 1101 11 22346799999999977665
Q ss_pred HHH-h----hCCCCCEEEEcCCcccCC
Q 015441 144 EII-K----GLPKSLKIVDLSADFRLR 165 (406)
Q Consensus 144 ~~~-~----~l~~G~~VIDlSa~fRl~ 165 (406)
++. + .+..|..|+ .++-|.+.
T Consensus 88 ~V~~~~I~~~Lk~g~iL~-~a~G~~i~ 113 (330)
T PRK05479 88 EVYEEEIEPNLKEGAALA-FAHGFNIH 113 (330)
T ss_pred HHHHHHHHhcCCCCCEEE-ECCCCChh
Confidence 554 3 234566654 44445443
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.22 E-value=0.91 Score=41.97 Aligned_cols=32 Identities=19% Similarity=0.023 Sum_probs=25.1
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+.+|.|.||||.+|++|++.|.+... +++.+.
T Consensus 6 ~~~vlItGasg~iG~~l~~~l~~~g~-~v~~~~ 37 (249)
T PRK12825 6 GRVALVTGAARGLGRAIALRLARAGA-DVVVHY 37 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEe
Confidence 35899999999999999999986543 554433
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=87.19 E-value=1.2 Score=47.19 Aligned_cols=94 Identities=14% Similarity=0.235 Sum_probs=52.0
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccC--cccCCCCCEEEEcCCCcch
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVK--DADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~--~~~~~~vDvVF~al~~~~s 142 (406)
+|+|+| .|..|+.|.+.|.++. +++.........-+.+...+. .+..+....... ...+.+.|+||+|++.+..
T Consensus 1 ~IG~IG-LG~MG~~mA~nL~~~G-~~V~v~drt~~~~~~l~~~~~--~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~ 76 (467)
T TIGR00873 1 DIGVIG-LAVMGSNLALNMADHG-FTVSVYNRTPEKTDEFLAEHA--KGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAP 76 (467)
T ss_pred CEEEEe-eHHHHHHHHHHHHhcC-CeEEEEeCCHHHHHHHHhhcc--CCCCceecCCHHHHHhhcCCCCEEEEECCCcHH
Confidence 489999 9999999999998764 455554322111111111100 000010011110 1122468999999998543
Q ss_pred -HHHH----hhCCCCCEEEEcCCcc
Q 015441 143 -QEII----KGLPKSLKIVDLSADF 162 (406)
Q Consensus 143 -~~~~----~~l~~G~~VIDlSa~f 162 (406)
.+.+ +.+..|..|||.|..+
T Consensus 77 v~~Vi~~l~~~L~~g~iIID~gns~ 101 (467)
T TIGR00873 77 VDAVINQLLPLLEKGDIIIDGGNSH 101 (467)
T ss_pred HHHHHHHHHhhCCCCCEEEECCCcC
Confidence 3333 3356788999998643
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=87.08 E-value=0.73 Score=45.84 Aligned_cols=29 Identities=24% Similarity=0.500 Sum_probs=23.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIK 92 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv 92 (406)
+||.|.||||++|+.|++.|.+.....++
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~~v~ 29 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDSVV 29 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCCeEE
Confidence 37999999999999999999876543343
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=86.64 E-value=0.94 Score=45.03 Aligned_cols=91 Identities=14% Similarity=0.073 Sum_probs=51.0
Q ss_pred ccEEEEECcccHHHHHHHHHHHc-CCCceEEEEeccCcCC-ccccccccCccccCCCc-ccccCcccCCCCCEEEEcCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLAN-HPYFGIKLMTADRKAG-QSIGSVFPHLISQDLPT-MVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~-hp~~elv~l~s~~~~G-~~i~~v~p~l~~~~~~~-~~~~~~~~~~~vDvVF~al~~ 139 (406)
..+|+|+| +|..|+..++.+.. ++. +-+.+.++.... +.+..- +....+.. .... ++...++|+|+.||+.
T Consensus 125 ~~~v~IiG-aG~qa~~~~~al~~~~~~-~~v~v~~r~~~~a~~~a~~---~~~~~~~~~~~~~-~~av~~aDiVitaT~s 198 (304)
T PRK07340 125 PGDLLLIG-TGVQARAHLEAFAAGLPV-RRVWVRGRTAASAAAFCAH---ARALGPTAEPLDG-EAIPEAVDLVVTATTS 198 (304)
T ss_pred CCEEEEEC-CcHHHHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHH---HHhcCCeeEECCH-HHHhhcCCEEEEccCC
Confidence 35899999 89999999998874 554 445555544211 111110 11001111 1111 2234689999999996
Q ss_pred cchHHHHh-hCCCCCEEEEcCCc
Q 015441 140 GTTQEIIK-GLPKSLKIVDLSAD 161 (406)
Q Consensus 140 ~~s~~~~~-~l~~G~~VIDlSa~ 161 (406)
.. .+.. .++.|..|+-.+++
T Consensus 199 ~~--Pl~~~~~~~g~hi~~iGs~ 219 (304)
T PRK07340 199 RT--PVYPEAARAGRLVVAVGAF 219 (304)
T ss_pred CC--ceeCccCCCCCEEEecCCC
Confidence 64 2222 35678877755553
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.59 E-value=0.93 Score=44.32 Aligned_cols=31 Identities=26% Similarity=0.214 Sum_probs=25.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||+|.+|+++++.|.++. .+++.+.
T Consensus 41 k~vlItGasggIG~~la~~La~~G-~~Vi~~~ 71 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRG-ATVVAVA 71 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEE
Confidence 579999999999999999998764 5665554
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=86.46 E-value=1.1 Score=44.46 Aligned_cols=72 Identities=15% Similarity=0.308 Sum_probs=40.1
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccCcC--Ccccc--ccccCccccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRKA--GQSIG--SVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~~~--G~~i~--~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
||+|+| +|.+|+.++..|...... +++.+.-.... +...+ ..... ..... .+...+.+++.++|+|+.|++.
T Consensus 2 kI~IIG-aG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~-~~~~~-~i~~~~~~~l~~aDIVIitag~ 78 (306)
T cd05291 2 KVVIIG-AGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAF-LPSPV-KIKAGDYSDCKDADIVVITAGA 78 (306)
T ss_pred EEEEEC-CCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhc-cCCCe-EEEcCCHHHhCCCCEEEEccCC
Confidence 799999 599999999999876654 66655422211 11111 00000 00010 0111223346789999999875
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=86.37 E-value=0.87 Score=42.38 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=22.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l 94 (406)
.||+|+|+.| +|.++++.|...-.-+++.+
T Consensus 20 s~VlviG~gg-lGsevak~L~~~GVg~i~lv 49 (198)
T cd01485 20 AKVLIIGAGA-LGAEIAKNLVLAGIDSITIV 49 (198)
T ss_pred CcEEEECCCH-HHHHHHHHHHHcCCCEEEEE
Confidence 6899999766 99999999885433344444
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=86.29 E-value=2.2 Score=44.00 Aligned_cols=93 Identities=14% Similarity=0.223 Sum_probs=49.8
Q ss_pred cEEEEECcccHHHHHHHHHHH-cCCCceEEEEeccCcCC-cccccccc-Ccc---ccCC--CcccccCcccCCCCCEEEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLA-NHPYFGIKLMTADRKAG-QSIGSVFP-HLI---SQDL--PTMVAVKDADFSNVDAVFC 135 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~-~hp~~elv~l~s~~~~G-~~i~~v~p-~l~---~~~~--~~~~~~~~~~~~~vDvVF~ 135 (406)
.+|+|+| +|.||+++.+.|. .+ .+++.++....... ......++ .+. ..+. ....++ ++.+.++|+|.+
T Consensus 166 ktvGIiG-~G~IG~~vA~~l~~~f-Gm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L-~ell~~sDiV~l 242 (386)
T PLN02306 166 QTVGVIG-AGRIGSAYARMMVEGF-KMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSM-EEVLREADVISL 242 (386)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhcC-CCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCH-HHHHhhCCEEEE
Confidence 5799999 9999999999985 55 56776553211110 00000010 000 0000 001112 233578999999
Q ss_pred cCCCcch-H-----HHHhhCCCCCEEEEcC
Q 015441 136 CLPHGTT-Q-----EIIKGLPKSLKIVDLS 159 (406)
Q Consensus 136 al~~~~s-~-----~~~~~l~~G~~VIDlS 159 (406)
++|.... . +....++.|..+|..+
T Consensus 243 h~Plt~~T~~lin~~~l~~MK~ga~lIN~a 272 (386)
T PLN02306 243 HPVLDKTTYHLINKERLALMKKEAVLVNAS 272 (386)
T ss_pred eCCCChhhhhhcCHHHHHhCCCCeEEEECC
Confidence 9885432 2 2333456788888544
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=86.13 E-value=1.1 Score=43.18 Aligned_cols=92 Identities=21% Similarity=0.292 Sum_probs=52.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEecc---------------CcCCc--------cccccccCccccCCCccc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD---------------RKAGQ--------SIGSVFPHLISQDLPTMV 120 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~---------------~~~G~--------~i~~v~p~l~~~~~~~~~ 120 (406)
.||+|+|+ |-+|.++++.|..-..-+++.+-.+ ...|+ .+.+..|......+. .
T Consensus 33 ~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~--~ 109 (245)
T PRK05690 33 ARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETIN--A 109 (245)
T ss_pred CeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEe--c
Confidence 68999995 8889999999986444445444211 12232 122222222111110 0
Q ss_pred ccCc----ccCCCCCEEEEcCCCcchHHHHhh-C-CCCCEEEEc
Q 015441 121 AVKD----ADFSNVDAVFCCLPHGTTQEIIKG-L-PKSLKIVDL 158 (406)
Q Consensus 121 ~~~~----~~~~~vDvVF~al~~~~s~~~~~~-l-~~G~~VIDl 158 (406)
.+++ +.+.++|+||.|+....++.++.. . ..++.+|+-
T Consensus 110 ~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~ 153 (245)
T PRK05690 110 RLDDDELAALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVSG 153 (245)
T ss_pred cCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEe
Confidence 1111 225789999999998877665543 2 567888853
|
|
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=85.98 E-value=1.3 Score=44.41 Aligned_cols=92 Identities=11% Similarity=0.150 Sum_probs=53.6
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-ccccccccCccccCCCccccc-C-cccCCCCCEEEEcCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAV-K-DADFSNVDAVFCCLPH 139 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-~~i~~v~p~l~~~~~~~~~~~-~-~~~~~~vDvVF~al~~ 139 (406)
..+++|+| +|..++.-++.+..-..++-+.+.+++... +.+... +....++ +... + ++...++|+|++||+.
T Consensus 128 ~~~l~iiG-~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~---~~~~~~~-v~~~~~~~~av~~ADIV~taT~s 202 (315)
T PRK06823 128 VSAIGIVG-TGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQY---AQALGFA-VNTTLDAAEVAHAANLIVTTTPS 202 (315)
T ss_pred CCEEEEEC-CcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHH---HHhcCCc-EEEECCHHHHhcCCCEEEEecCC
Confidence 46899999 999999999988764445666666654321 111110 1111111 1111 1 2334789999999986
Q ss_pred cchHHHH--hhCCCCCEEEEcCCc
Q 015441 140 GTTQEII--KGLPKSLKIVDLSAD 161 (406)
Q Consensus 140 ~~s~~~~--~~l~~G~~VIDlSa~ 161 (406)
.. .+. ..++.|..|+-.+++
T Consensus 203 ~~--P~~~~~~l~~G~hi~~iGs~ 224 (315)
T PRK06823 203 RE--PLLQAEDIQPGTHITAVGAD 224 (315)
T ss_pred CC--ceeCHHHcCCCcEEEecCCC
Confidence 53 222 245678887755554
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=85.69 E-value=1.2 Score=44.27 Aligned_cols=31 Identities=23% Similarity=0.368 Sum_probs=26.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||||++|+.|++.|.+.. .+++.+.
T Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~ 36 (352)
T PLN02240 6 RTILVTGGAGYIGSHTVLQLLLAG-YKVVVID 36 (352)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEEe
Confidence 589999999999999999998654 4676664
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.55 E-value=1.7 Score=42.77 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=22.6
Q ss_pred EEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 66 VaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|+|.|+||+||+.|...|.... -+++.++
T Consensus 1 IliTGgTGlIG~~L~~~L~~~g-h~v~ilt 29 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGG-HQVTILT 29 (297)
T ss_pred CeEeccccchhHHHHHHHHhCC-CeEEEEE
Confidence 5899999999999999997542 3555554
|
|
| >PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional | Back alignment and domain information |
|---|
Probab=85.54 E-value=0.78 Score=51.71 Aligned_cols=94 Identities=13% Similarity=0.111 Sum_probs=52.0
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcC---------CCceEEEEeccCcC-----CccccccccCccc-cCCCccc----c
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANH---------PYFGIKLMTADRKA-----GQSIGSVFPHLIS-QDLPTMV----A 121 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~h---------p~~elv~l~s~~~~-----G~~i~~v~p~l~~-~~~~~~~----~ 121 (406)
.++++|+|+| .|-||+.++++|.++ -+++++.+++++.. |-.....-..+.. ....... .
T Consensus 456 ~~~i~i~l~G-~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~e~ 534 (810)
T PRK09466 456 EKRIGLVLFG-KGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFDDEAVEWDEESLFLW 534 (810)
T ss_pred CceEEEEEEe-cCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHHhhcCCccHHHHHHH
Confidence 3568999999 999999999999742 24677888754321 1000000000000 0000000 0
Q ss_pred cCcccCCCCCEEEEcCCCcchHH-HHhhCCCCCEEE
Q 015441 122 VKDADFSNVDAVFCCLPHGTTQE-IIKGLPKSLKIV 156 (406)
Q Consensus 122 ~~~~~~~~vDvVF~al~~~~s~~-~~~~l~~G~~VI 156 (406)
+...+ .+.++++.|++...... +..++++|+.||
T Consensus 535 i~~~~-~~~~vvVd~t~~~~~~~~~~~aL~~G~~VV 569 (810)
T PRK09466 535 LRAHP-YDELVVLDVTASEQLALQYPDFASHGFHVI 569 (810)
T ss_pred HhhcC-CCCcEEEECCCChHHHHHHHHHHHcCCEEE
Confidence 00000 12469999998764443 445578999999
|
|
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=85.47 E-value=1.6 Score=43.13 Aligned_cols=74 Identities=15% Similarity=0.213 Sum_probs=50.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcC-CCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANH-PYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~h-p~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
.+|.|+|.+..||+=|..+|.++ .+..+...-++. .++ .+...++|+|+.|.|..
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T---------------~~l-------~~~~k~ADIvV~AvGkp-- 214 (284)
T PRK14193 159 AHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGT---------------RDL-------AAHTRRADIIVAAAGVA-- 214 (284)
T ss_pred CEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCC---------------CCH-------HHHHHhCCEEEEecCCc--
Confidence 58999999999999999999864 345443332211 111 11235789999999864
Q ss_pred HHHHh--hCCCCCEEEEcCCcc
Q 015441 143 QEIIK--GLPKSLKIVDLSADF 162 (406)
Q Consensus 143 ~~~~~--~l~~G~~VIDlSa~f 162 (406)
++.+ .+..|+.|||.+-.+
T Consensus 215 -~~i~~~~ik~GavVIDvGin~ 235 (284)
T PRK14193 215 -HLVTADMVKPGAAVLDVGVSR 235 (284)
T ss_pred -CccCHHHcCCCCEEEEccccc
Confidence 2333 257799999987653
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=85.46 E-value=1.9 Score=40.27 Aligned_cols=83 Identities=12% Similarity=0.165 Sum_probs=47.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCc-ccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPT-MVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~-~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
.+|.|+| .|-+|...++.|.+.. .+++.++ +. ....+....+. + .+.. -..+++.++.++|+||.|++....
T Consensus 11 k~vLVIG-gG~va~~ka~~Ll~~g-a~V~VIs-~~-~~~~l~~l~~~--~-~i~~~~~~~~~~~l~~adlViaaT~d~el 83 (202)
T PRK06718 11 KRVVIVG-GGKVAGRRAITLLKYG-AHIVVIS-PE-LTENLVKLVEE--G-KIRWKQKEFEPSDIVDAFLVIAATNDPRV 83 (202)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCC-CeEEEEc-CC-CCHHHHHHHhC--C-CEEEEecCCChhhcCCceEEEEcCCCHHH
Confidence 5899999 7999999999888654 5666554 22 11111111110 0 0100 011224456789999999987765
Q ss_pred HHHH-hhCCCCC
Q 015441 143 QEII-KGLPKSL 153 (406)
Q Consensus 143 ~~~~-~~l~~G~ 153 (406)
-+.+ ....++.
T Consensus 84 N~~i~~~a~~~~ 95 (202)
T PRK06718 84 NEQVKEDLPENA 95 (202)
T ss_pred HHHHHHHHHhCC
Confidence 4433 3334454
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=85.29 E-value=1.1 Score=44.23 Aligned_cols=31 Identities=23% Similarity=0.459 Sum_probs=25.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+||.|.||||++|+.|++.|.+.. .+++.+.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~ 31 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNG-HDVVILD 31 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCC-CeEEEEe
Confidence 479999999999999999888653 4666653
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=84.96 E-value=2.8 Score=41.85 Aligned_cols=81 Identities=22% Similarity=0.308 Sum_probs=50.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccC------cCCccccccccCccccCCCcccccCcccCCCCCEEEEcC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR------KAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCL 137 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~------~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al 137 (406)
+||+|+| +|-+|.-+.-.|.+.. -.+..+...+ ..|..+.+....+ ..+.....+.+....+|+||.++
T Consensus 1 mkI~IlG-aGAvG~l~g~~L~~~g-~~V~~~~R~~~~~~l~~~GL~i~~~~~~~---~~~~~~~~~~~~~~~~Dlviv~v 75 (307)
T COG1893 1 MKILILG-AGAIGSLLGARLAKAG-HDVTLLVRSRRLEALKKKGLRIEDEGGNF---TTPVVAATDAEALGPADLVIVTV 75 (307)
T ss_pred CeEEEEC-CcHHHHHHHHHHHhCC-CeEEEEecHHHHHHHHhCCeEEecCCCcc---ccccccccChhhcCCCCEEEEEe
Confidence 5899999 9999999999998877 4555554322 1244444322200 11112222234456899999999
Q ss_pred CCcchHHHHhhC
Q 015441 138 PHGTTQEIIKGL 149 (406)
Q Consensus 138 ~~~~s~~~~~~l 149 (406)
-.....+.++.+
T Consensus 76 Ka~q~~~al~~l 87 (307)
T COG1893 76 KAYQLEEALPSL 87 (307)
T ss_pred ccccHHHHHHHh
Confidence 887777777654
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=84.74 E-value=1.1 Score=47.95 Aligned_cols=95 Identities=17% Similarity=0.258 Sum_probs=53.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCc----cc--cccccCcc--c-------cCCC-ccc----ccC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQ----SI--GSVFPHLI--S-------QDLP-TMV----AVK 123 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~----~i--~~v~p~l~--~-------~~~~-~~~----~~~ 123 (406)
-||+|+| .|.+|...++.+...- .+++.+. .+..-+ .+ ..+..... + ..+. .+. ..-
T Consensus 165 akVlViG-aG~iGl~Aa~~ak~lG-A~V~v~d-~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~ 241 (511)
T TIGR00561 165 AKVLVIG-AGVAGLAAIGAANSLG-AIVRAFD-TRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELF 241 (511)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCC-CEEEEEe-CCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHH
Confidence 5899999 7999999999888654 3444443 221100 00 00000000 0 0000 000 000
Q ss_pred cccCCCCCEEEEcC-----CC--cchHHHHhhCCCCCEEEEcCCc
Q 015441 124 DADFSNVDAVFCCL-----PH--GTTQEIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 124 ~~~~~~vDvVF~al-----~~--~~s~~~~~~l~~G~~VIDlSa~ 161 (406)
.+...++|+||.|. +. -++++..+..+.|.+|||++.+
T Consensus 242 ~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d 286 (511)
T TIGR00561 242 AAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAE 286 (511)
T ss_pred HHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeC
Confidence 11235799999998 33 2667777777889999999886
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=84.72 E-value=3 Score=40.72 Aligned_cols=92 Identities=18% Similarity=0.232 Sum_probs=49.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccC------cCCccccccccCccccCCCcccccCccc-CCCCCEEEEc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR------KAGQSIGSVFPHLISQDLPTMVAVKDAD-FSNVDAVFCC 136 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~------~~G~~i~~v~p~l~~~~~~~~~~~~~~~-~~~vDvVF~a 136 (406)
+||+|+| .|.+|..+...|.+.. .++..+.... ..|..+...... ...+.....+.++ ..++|++|+|
T Consensus 1 mkI~IiG-~G~iG~~~a~~L~~~g-~~V~~~~r~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~vila 75 (305)
T PRK12921 1 MRIAVVG-AGAVGGTFGGRLLEAG-RDVTFLVRPKRAKALRERGLVIRSDHGD---AVVPGPVITDPEELTGPFDLVILA 75 (305)
T ss_pred CeEEEEC-CCHHHHHHHHHHHHCC-CceEEEecHHHHHHHHhCCeEEEeCCCe---EEecceeecCHHHccCCCCEEEEE
Confidence 4899999 9999999999998653 3454444211 112111110000 0000000011112 2578999999
Q ss_pred CCCcchHHHHhhC----CCCCEEEEcCC
Q 015441 137 LPHGTTQEIIKGL----PKSLKIVDLSA 160 (406)
Q Consensus 137 l~~~~s~~~~~~l----~~G~~VIDlSa 160 (406)
++.....+.++.+ ..+..||.+..
T Consensus 76 vk~~~~~~~~~~l~~~~~~~~~ii~~~n 103 (305)
T PRK12921 76 VKAYQLDAAIPDLKPLVGEDTVIIPLQN 103 (305)
T ss_pred ecccCHHHHHHHHHhhcCCCCEEEEeeC
Confidence 9987666655443 34566776544
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=84.64 E-value=1.5 Score=42.82 Aligned_cols=31 Identities=23% Similarity=0.411 Sum_probs=25.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||||++|+.+++.|+++. .+++.+.
T Consensus 7 k~vlVTGatG~IG~~lv~~Ll~~G-~~V~~~~ 37 (297)
T PLN02583 7 KSVCVMDASGYVGFWLVKRLLSRG-YTVHAAV 37 (297)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-CEEEEEE
Confidence 479999999999999999998653 5676654
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=84.62 E-value=2.6 Score=42.77 Aligned_cols=98 Identities=19% Similarity=0.357 Sum_probs=53.7
Q ss_pred EEEEECcccHHHHHHHHHHHcCC-------CceEEEEeccCcC-Ccc----ccccc--cC-ccccCCCc-ccc-cC-ccc
Q 015441 65 RIGLLGASGYTGAEIVRLLANHP-------YFGIKLMTADRKA-GQS----IGSVF--PH-LISQDLPT-MVA-VK-DAD 126 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp-------~~elv~l~s~~~~-G~~----i~~v~--p~-l~~~~~~~-~~~-~~-~~~ 126 (406)
||+|+| +|-.|..|...|.+.- +.++....-+... +.. +...+ ++ +.+..++. +.. .+ .+.
T Consensus 1 kI~VIG-aG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~ea 79 (342)
T TIGR03376 1 RVAVVG-SGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA 79 (342)
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHH
Confidence 689999 8999999999998531 1344444321100 111 11111 11 12222221 111 11 122
Q ss_pred CCCCCEEEEcCCCcchHHHHhh----CCCCCEEEEcCCccc
Q 015441 127 FSNVDAVFCCLPHGTTQEIIKG----LPKSLKIVDLSADFR 163 (406)
Q Consensus 127 ~~~vDvVF~al~~~~s~~~~~~----l~~G~~VIDlSa~fR 163 (406)
..++|++|+|+|+..-++.++. +..+..+|.++--+-
T Consensus 80 l~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie 120 (342)
T TIGR03376 80 AKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLE 120 (342)
T ss_pred HhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcc
Confidence 4689999999998877776654 344667787766553
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=84.58 E-value=1.2 Score=44.06 Aligned_cols=31 Identities=13% Similarity=0.225 Sum_probs=26.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||||++|+.|++.|.+. ..+++.+.
T Consensus 7 ~~vlVTGatGfiG~~l~~~L~~~-G~~V~~~~ 37 (340)
T PLN02653 7 KVALITGITGQDGSYLTEFLLSK-GYEVHGII 37 (340)
T ss_pred CEEEEECCCCccHHHHHHHHHHC-CCEEEEEe
Confidence 57999999999999999999875 35776664
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=84.57 E-value=1.4 Score=52.51 Aligned_cols=89 Identities=18% Similarity=0.167 Sum_probs=51.9
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
++.+|+++| .|.+|..+.+.|...- +++... +++. .-..+... + ....... .+...++|+||+|++..
T Consensus 323 ~~~~IGfIG-lG~MG~~mA~~L~~~G-~~V~v~-dr~~~~~~~l~~~-----G--a~~~~s~-~e~~~~aDvVi~~V~~~ 391 (1378)
T PLN02858 323 PVKRIGFIG-LGAMGFGMASHLLKSN-FSVCGY-DVYKPTLVRFENA-----G--GLAGNSP-AEVAKDVDVLVIMVANE 391 (1378)
T ss_pred CCCeEEEEC-chHHHHHHHHHHHHCC-CEEEEE-eCCHHHHHHHHHc-----C--CeecCCH-HHHHhcCCEEEEecCCh
Confidence 457899999 9999999999888653 455444 3221 11111110 1 0001111 12235799999999954
Q ss_pred ch-HHHH-------hhCCCCCEEEEcCCc
Q 015441 141 TT-QEII-------KGLPKSLKIVDLSAD 161 (406)
Q Consensus 141 ~s-~~~~-------~~l~~G~~VIDlSa~ 161 (406)
.. .+.. +.+..|..|||.|.-
T Consensus 392 ~~v~~Vl~g~~g~~~~l~~g~ivVd~STv 420 (1378)
T PLN02858 392 VQAENVLFGDLGAVSALPAGASIVLSSTV 420 (1378)
T ss_pred HHHHHHHhchhhHHhcCCCCCEEEECCCC
Confidence 43 3332 223568899999874
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.48 E-value=1.3 Score=41.45 Aligned_cols=31 Identities=19% Similarity=0.155 Sum_probs=25.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.++.|.||+|.+|+.+++.|.++. .+++.+.
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G-~~V~~~~ 37 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAG-AHVVVNY 37 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCC-CEEEEEe
Confidence 479999999999999999998653 4665553
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=84.40 E-value=1.4 Score=40.93 Aligned_cols=93 Identities=20% Similarity=0.216 Sum_probs=50.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEecc---------------CcCCc--------cccccccCccccCCC-cc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD---------------RKAGQ--------SIGSVFPHLISQDLP-TM 119 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~---------------~~~G~--------~i~~v~p~l~~~~~~-~~ 119 (406)
.||+|+|+.| +|.++++.|.....-++..+-.+ ...|+ .+.+..|........ .+
T Consensus 22 s~VlIiG~gg-lG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~~ 100 (197)
T cd01492 22 ARILLIGLKG-LGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDDI 100 (197)
T ss_pred CcEEEEcCCH-HHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecCc
Confidence 5899999666 99999999986554445444321 12232 122333332211000 01
Q ss_pred cccCcccCCCCCEEEEcCCCcchHHHHhh-C-CCCCEEEE
Q 015441 120 VAVKDADFSNVDAVFCCLPHGTTQEIIKG-L-PKSLKIVD 157 (406)
Q Consensus 120 ~~~~~~~~~~vDvVF~al~~~~s~~~~~~-l-~~G~~VID 157 (406)
.+..++.|.+.|+|++|++...++..+.. . +.++.+|.
T Consensus 101 ~~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~ 140 (197)
T cd01492 101 SEKPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYA 140 (197)
T ss_pred cccHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence 11112235789999999887655444433 2 45777663
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.37 E-value=0.99 Score=43.20 Aligned_cols=31 Identities=10% Similarity=0.115 Sum_probs=25.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.++.|.||+|.+|+++++.|.+.. .+++.+.
T Consensus 2 k~vlItGasggiG~~la~~l~~~G-~~V~~~~ 32 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAG-YEVWATA 32 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCC-CEEEEEe
Confidence 479999999999999999998653 5665553
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.29 E-value=2.1 Score=41.93 Aligned_cols=98 Identities=15% Similarity=0.243 Sum_probs=51.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC--Ccccc-------ccc--cCccccC----CCccc-ccCcccC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA--GQSIG-------SVF--PHLISQD----LPTMV-AVKDADF 127 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~--G~~i~-------~v~--p~l~~~~----~~~~~-~~~~~~~ 127 (406)
.||+|+| .|..|..+...|+.. ..++..+ +++.. .+-.. ... ..+...+ +..+. ..+.+++
T Consensus 5 ~kI~vIG-aG~mG~~iA~~la~~-G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 81 (292)
T PRK07530 5 KKVGVIG-AGQMGNGIAHVCALA-GYDVLLN-DVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDL 81 (292)
T ss_pred CEEEEEC-CcHHHHHHHHHHHHC-CCeEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHh
Confidence 5799999 899999999988864 2455544 32211 00000 000 0000000 00001 0112235
Q ss_pred CCCCEEEEcCCCcch--HHHH----hhCCCCCEEEEcCCcccC
Q 015441 128 SNVDAVFCCLPHGTT--QEII----KGLPKSLKIVDLSADFRL 164 (406)
Q Consensus 128 ~~vDvVF~al~~~~s--~~~~----~~l~~G~~VIDlSa~fRl 164 (406)
.++|+||+|.|.... ..+. +.+..++.++.+++....
T Consensus 82 ~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~ 124 (292)
T PRK07530 82 ADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI 124 (292)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH
Confidence 689999999997533 2222 234556777766666543
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=84.06 E-value=1.1 Score=43.79 Aligned_cols=84 Identities=14% Similarity=0.219 Sum_probs=46.7
Q ss_pred EECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-HHHH
Q 015441 68 LLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT-QEII 146 (406)
Q Consensus 68 IvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s-~~~~ 146 (406)
|+| .|.+|..+.+.|.+.. .++... +++.. +... +........... .+...++|+||+|+|.... .++.
T Consensus 1 ~IG-lG~mG~~mA~~L~~~G-~~V~v~-dr~~~--~~~~----l~~~g~~~~~s~-~~~~~~advVil~vp~~~~~~~v~ 70 (288)
T TIGR01692 1 FIG-LGNMGGPMAANLLKAG-HPVRVF-DLFPD--AVEE----AVAAGAQAAASP-AEAAEGADRVITMLPAGQHVISVY 70 (288)
T ss_pred CCc-ccHhHHHHHHHHHhCC-CeEEEE-eCCHH--HHHH----HHHcCCeecCCH-HHHHhcCCEEEEeCCChHHHHHHH
Confidence 467 9999999999988643 355444 33221 1111 000001001111 1234679999999997443 3333
Q ss_pred -------hhCCCCCEEEEcCCc
Q 015441 147 -------KGLPKSLKIVDLSAD 161 (406)
Q Consensus 147 -------~~l~~G~~VIDlSa~ 161 (406)
+.+..|..|||.|+-
T Consensus 71 ~g~~~l~~~~~~g~~vid~st~ 92 (288)
T TIGR01692 71 SGDEGILPKVAKGSLLIDCSTI 92 (288)
T ss_pred cCcchHhhcCCCCCEEEECCCC
Confidence 223567899999864
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=83.97 E-value=1.3 Score=44.02 Aligned_cols=30 Identities=13% Similarity=0.278 Sum_probs=25.2
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+|.|.||||++|+.|++.|.... .+++.+.
T Consensus 2 ~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~ 31 (343)
T TIGR01472 2 IALITGITGQDGSYLAEFLLEKG-YEVHGLI 31 (343)
T ss_pred eEEEEcCCCcHHHHHHHHHHHCC-CEEEEEe
Confidence 79999999999999999998653 4776664
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=83.94 E-value=1.1 Score=46.04 Aligned_cols=30 Identities=23% Similarity=0.403 Sum_probs=24.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|||+|+| |||||-...-+|+++- .+++++-
T Consensus 1 MkI~viG-tGYVGLv~g~~lA~~G-HeVv~vD 30 (414)
T COG1004 1 MKITVIG-TGYVGLVTGACLAELG-HEVVCVD 30 (414)
T ss_pred CceEEEC-CchHHHHHHHHHHHcC-CeEEEEe
Confidence 5899999 9999998888888654 3666664
|
|
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=83.94 E-value=1.9 Score=41.96 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=23.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+||.|+|+||+ |+.|++.|.... .++...+
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g-~~v~~s~ 30 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQG-IEILVTV 30 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCC-CeEEEEE
Confidence 47999999999 999999888654 4554444
|
This enzyme was found to be a monomer by gel filtration. |
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=83.93 E-value=3.4 Score=40.86 Aligned_cols=30 Identities=17% Similarity=0.371 Sum_probs=24.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
++|+|+| .|.+|..+...|+.+- .+++.+.
T Consensus 3 ~~V~VIG-~G~mG~~iA~~la~~G-~~V~v~d 32 (308)
T PRK06129 3 GSVAIIG-AGLIGRAWAIVFARAG-HEVRLWD 32 (308)
T ss_pred cEEEEEC-ccHHHHHHHHHHHHCC-CeeEEEe
Confidence 4899999 9999999999998763 4555553
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.84 E-value=1.4 Score=40.68 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=25.7
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|.++.|.||+|.+|+.+++.|+.+ ..+++.+.
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~-G~~v~~~~ 32 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRAD-GWRVIATA 32 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhC-CCEEEEEE
Confidence 357999999999999999998865 45666654
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=83.53 E-value=1.2 Score=48.83 Aligned_cols=26 Identities=15% Similarity=0.428 Sum_probs=22.5
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcC
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANH 86 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~h 86 (406)
++++||.|.||+|++|+.|++.|...
T Consensus 378 ~~~mkiLVtGa~G~iG~~l~~~L~~~ 403 (668)
T PLN02260 378 KPSLKFLIYGRTGWIGGLLGKLCEKQ 403 (668)
T ss_pred CCCceEEEECCCchHHHHHHHHHHhC
Confidence 34569999999999999999999754
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=83.51 E-value=0.93 Score=43.35 Aligned_cols=31 Identities=23% Similarity=0.142 Sum_probs=25.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||+|.+|+++++.|.+.. .+++.+.
T Consensus 4 k~vlItGasggiG~~la~~l~~~G-~~V~~~~ 34 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQG-YTVYGAA 34 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEEe
Confidence 479999999999999999998653 4665554
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=83.42 E-value=1.4 Score=41.71 Aligned_cols=32 Identities=19% Similarity=0.125 Sum_probs=25.8
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+.+|.|.||+|.+|+++++.|+++. .+++.+.
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G-~~V~~~~ 33 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQG-FDIGITW 33 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC-CEEEEEe
Confidence 3479999999999999999999764 4665554
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=83.33 E-value=1.8 Score=41.86 Aligned_cols=30 Identities=27% Similarity=0.406 Sum_probs=23.2
Q ss_pred EEEECcccHHHHHHHHHHHcCC---CceEEEEe
Q 015441 66 IGLLGASGYTGAEIVRLLANHP---YFGIKLMT 95 (406)
Q Consensus 66 VaIvGATG~vG~eLlrlL~~hp---~~elv~l~ 95 (406)
|+|+||.|.+|..++..|...+ ..+++.+-
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D 33 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYD 33 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEe
Confidence 6899998999999999887544 24666553
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.31 E-value=1.7 Score=40.64 Aligned_cols=32 Identities=22% Similarity=0.175 Sum_probs=26.2
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|+++.|.||+|.+|+.+++.|+++. .+++.+.
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G-~~v~~~~ 32 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPG-IAVLGVA 32 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCC-CEEEEEe
Confidence 3589999999999999999998764 5665553
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=83.22 E-value=3.7 Score=43.49 Aligned_cols=85 Identities=9% Similarity=0.099 Sum_probs=49.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc--c
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG--T 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~--~ 141 (406)
.+|+|+| .|.+|+.+++.|..+- ++++... +.. .+...... .+... ..+ ++.+..+|+|+.|++.. +
T Consensus 255 KtVgVIG-~G~IGr~vA~rL~a~G-a~ViV~e-~dp-~~a~~A~~---~G~~~---~~l-eell~~ADIVI~atGt~~iI 323 (476)
T PTZ00075 255 KTVVVCG-YGDVGKGCAQALRGFG-ARVVVTE-IDP-ICALQAAM---EGYQV---VTL-EDVVETADIFVTATGNKDII 323 (476)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCC-CEEEEEe-CCc-hhHHHHHh---cCcee---ccH-HHHHhcCCEEEECCCccccc
Confidence 5799999 9999999999998764 4554432 211 11100000 01111 111 22346899999998742 2
Q ss_pred hHHHHhhCCCCCEEEEcC
Q 015441 142 TQEIIKGLPKSLKIVDLS 159 (406)
Q Consensus 142 s~~~~~~l~~G~~VIDlS 159 (406)
..+....++.|+.+|+.+
T Consensus 324 ~~e~~~~MKpGAiLINvG 341 (476)
T PTZ00075 324 TLEHMRRMKNNAIVGNIG 341 (476)
T ss_pred CHHHHhccCCCcEEEEcC
Confidence 345556667889999553
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=83.21 E-value=2.5 Score=41.89 Aligned_cols=89 Identities=15% Similarity=0.253 Sum_probs=52.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
+||+.|| .|..|.-+.+-|.+-- +++.... ++. .+...... -.+.. ..... .+...++|+||.|++.+...
T Consensus 1 ~kIafIG-LG~MG~pmA~~L~~aG-~~v~v~~-r~~-~ka~~~~~--~~Ga~--~a~s~-~eaa~~aDvVitmv~~~~~V 71 (286)
T COG2084 1 MKIAFIG-LGIMGSPMAANLLKAG-HEVTVYN-RTP-EKAAELLA--AAGAT--VAASP-AEAAAEADVVITMLPDDAAV 71 (286)
T ss_pred CeEEEEc-CchhhHHHHHHHHHCC-CEEEEEe-CCh-hhhhHHHH--HcCCc--ccCCH-HHHHHhCCEEEEecCCHHHH
Confidence 4799999 9999999999888532 3444443 221 11111000 00111 01111 23346899999999988775
Q ss_pred HHHh--------hCCCCCEEEEcCCc
Q 015441 144 EIIK--------GLPKSLKIVDLSAD 161 (406)
Q Consensus 144 ~~~~--------~l~~G~~VIDlSa~ 161 (406)
+-+- .+..|..|||+|..
T Consensus 72 ~~V~~g~~g~~~~~~~G~i~IDmSTi 97 (286)
T COG2084 72 RAVLFGENGLLEGLKPGAIVIDMSTI 97 (286)
T ss_pred HHHHhCccchhhcCCCCCEEEECCCC
Confidence 4331 12358899999885
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=83.02 E-value=3.1 Score=43.60 Aligned_cols=85 Identities=20% Similarity=0.378 Sum_probs=54.0
Q ss_pred cEEEEECcc---cHHHHHHHHHHHcCCC-ceEEEEeccCcCCccccccccCcccc-CCCcccccCcccCCCCCEEEEcCC
Q 015441 64 VRIGLLGAS---GYTGAEIVRLLANHPY-FGIKLMTADRKAGQSIGSVFPHLISQ-DLPTMVAVKDADFSNVDAVFCCLP 138 (406)
Q Consensus 64 ikVaIvGAT---G~vG~eLlrlL~~hp~-~elv~l~s~~~~G~~i~~v~p~l~~~-~~~~~~~~~~~~~~~vDvVF~al~ 138 (406)
.+|+|+||| |-.|..+++.|.++.. -++..++-+.. +++ +. -++.+.++ -..+|+++.|+|
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~------~i~----G~~~~~sl~~l----p~~~Dlavi~vp 73 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAG------EIL----GVKAYPSVLEI----PDPVDLAVIVVP 73 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCC------ccC----CccccCCHHHC----CCCCCEEEEecC
Confidence 479999998 6689999998887653 36766654321 111 11 11112222 146899999999
Q ss_pred CcchHHHHhhC-CCCC--EEEEcCCccc
Q 015441 139 HGTTQEIIKGL-PKSL--KIVDLSADFR 163 (406)
Q Consensus 139 ~~~s~~~~~~l-~~G~--~VIDlSa~fR 163 (406)
.....+.++.+ ++|+ .|| +|+-|.
T Consensus 74 ~~~~~~~l~e~~~~gv~~~vi-~s~gf~ 100 (447)
T TIGR02717 74 AKYVPQVVEECGEKGVKGAVV-ITAGFK 100 (447)
T ss_pred HHHHHHHHHHHHhcCCCEEEE-ECCCcc
Confidence 99888888765 6665 334 566564
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.97 E-value=1.8 Score=44.26 Aligned_cols=34 Identities=26% Similarity=0.547 Sum_probs=27.0
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCC-CceEEEE
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHP-YFGIKLM 94 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp-~~elv~l 94 (406)
+++.++.|+|++|++|+.|++.|.+.. ..++..+
T Consensus 2 ~~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~ 36 (361)
T KOG1430|consen 2 EKKLSVLVTGGSGFLGQHLVQALLENELKLEIRVV 36 (361)
T ss_pred CcCCEEEEECCccHHHHHHHHHHHhcccccEEEEe
Confidence 345789999999999999999998654 5566544
|
|
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=82.93 E-value=3.5 Score=41.66 Aligned_cols=83 Identities=17% Similarity=0.329 Sum_probs=46.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.+|+|+| .|.||+.+++.|..+- ......++... +.++.+. .... ..++ ++.+.++|+++.|.|-...
T Consensus 163 K~vgilG-~G~IG~~ia~rL~~Fg--~~i~y~~r~~~--~~~~~~~-~~~~----~~d~-~~~~~~sD~ivv~~pLt~~T 231 (336)
T KOG0069|consen 163 KTVGILG-LGRIGKAIAKRLKPFG--CVILYHSRTQL--PPEEAYE-YYAE----FVDI-EELLANSDVIVVNCPLTKET 231 (336)
T ss_pred CEEEEec-CcHHHHHHHHhhhhcc--ceeeeecccCC--chhhHHH-hccc----ccCH-HHHHhhCCEEEEecCCCHHH
Confidence 5899999 9999999999998654 33334333321 1111100 0000 1111 2234689999888885444
Q ss_pred HHHH-----hhCCCCCEEEE
Q 015441 143 QEII-----KGLPKSLKIVD 157 (406)
Q Consensus 143 ~~~~-----~~l~~G~~VID 157 (406)
..+. .+.+.|+++|-
T Consensus 232 ~~liNk~~~~~mk~g~vlVN 251 (336)
T KOG0069|consen 232 RHLINKKFIEKMKDGAVLVN 251 (336)
T ss_pred HHHhhHHHHHhcCCCeEEEe
Confidence 3333 33456788773
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=82.74 E-value=3.6 Score=41.55 Aligned_cols=89 Identities=13% Similarity=0.213 Sum_probs=52.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|+||| .|.+|+.+.+.|..+ .+++....+. . +...... . .+ .. ..++ .+.+..+|+|++++|...++
T Consensus 17 KtVGIIG-~GsIG~amA~nL~d~-G~~ViV~~r~-~--~s~~~A~-~-~G--~~-v~sl-~Eaak~ADVV~llLPd~~t~ 85 (335)
T PRK13403 17 KTVAVIG-YGSQGHAQAQNLRDS-GVEVVVGVRP-G--KSFEVAK-A-DG--FE-VMSV-SEAVRTAQVVQMLLPDEQQA 85 (335)
T ss_pred CEEEEEe-EcHHHHHHHHHHHHC-cCEEEEEECc-c--hhhHHHH-H-cC--CE-ECCH-HHHHhcCCEEEEeCCChHHH
Confidence 4799999 999999999999865 3566554432 1 1111100 0 01 11 1111 23346899999999976665
Q ss_pred HHH-----hhCCCCCEEEEcCCcccC
Q 015441 144 EII-----KGLPKSLKIVDLSADFRL 164 (406)
Q Consensus 144 ~~~-----~~l~~G~~VIDlSa~fRl 164 (406)
.+. +.+..|..++ .|--|-.
T Consensus 86 ~V~~~eil~~MK~GaiL~-f~hgfni 110 (335)
T PRK13403 86 HVYKAEVEENLREGQMLL-FSHGFNI 110 (335)
T ss_pred HHHHHHHHhcCCCCCEEE-ECCCcce
Confidence 543 2235677665 5555543
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.46 E-value=1.8 Score=40.03 Aligned_cols=31 Identities=16% Similarity=0.133 Sum_probs=25.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|+||+|.+|+.+++.|.++ ..+++.+.
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~-g~~V~~~~ 37 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAE-GYKVAITA 37 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHC-CCEEEEee
Confidence 57999999999999999999876 45766654
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=82.45 E-value=1.5 Score=48.69 Aligned_cols=95 Identities=17% Similarity=0.229 Sum_probs=54.7
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCC-ceEEEEec--------------cCcCCc--------cccccccCccccCCCcc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPY-FGIKLMTA--------------DRKAGQ--------SIGSVFPHLISQDLPTM 119 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~-~elv~l~s--------------~~~~G~--------~i~~v~p~l~~~~~~~~ 119 (406)
..||+|+|+ | +|..++..|..--. -+|+.+-. ....|+ ++..+.|.+....++
T Consensus 107 ~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~-- 182 (722)
T PRK07877 107 RLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFT-- 182 (722)
T ss_pred cCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEe--
Confidence 368999998 8 89999999885432 24433321 112221 222233332211111
Q ss_pred cccCcc----cCCCCCEEEEcCCCcchHHHHhh--CCCCCEEEEcCCc
Q 015441 120 VAVKDA----DFSNVDAVFCCLPHGTTQEIIKG--LPKSLKIVDLSAD 161 (406)
Q Consensus 120 ~~~~~~----~~~~vDvVF~al~~~~s~~~~~~--l~~G~~VIDlSa~ 161 (406)
..++++ .+.++|+|++|+.+..++-++.. .+.|+.+|.-+++
T Consensus 183 ~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~~ 230 (722)
T PRK07877 183 DGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIPVLMATSD 230 (722)
T ss_pred ccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 112211 24689999999999888776643 3678888866653
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.39 E-value=2.7 Score=41.16 Aligned_cols=98 Identities=14% Similarity=0.294 Sum_probs=52.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-c----cccc-------cc--cCccccC----CCcccc-cCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-Q----SIGS-------VF--PHLISQD----LPTMVA-VKD 124 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-~----~i~~-------v~--p~l~~~~----~~~~~~-~~~ 124 (406)
.||+|+| .|.+|..+...|+.+- .+++.+. ++..- + .+.. .. ..+...+ ...+.. .+.
T Consensus 4 ~~I~ViG-aG~mG~~iA~~la~~G-~~V~l~d-~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 80 (291)
T PRK06035 4 KVIGVVG-SGVMGQGIAQVFARTG-YDVTIVD-VSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY 80 (291)
T ss_pred cEEEEEC-ccHHHHHHHHHHHhcC-CeEEEEe-CCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH
Confidence 4799999 8999999999998653 4555543 22110 0 0000 00 0000000 000111 111
Q ss_pred ccCCCCCEEEEcCCCcch--HHHHhh----CCCCCEEEEcCCcccC
Q 015441 125 ADFSNVDAVFCCLPHGTT--QEIIKG----LPKSLKIVDLSADFRL 164 (406)
Q Consensus 125 ~~~~~vDvVF~al~~~~s--~~~~~~----l~~G~~VIDlSa~fRl 164 (406)
+.+.++|+||+|.+.... +++.+. +..++.++.+++.+..
T Consensus 81 ~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~ 126 (291)
T PRK06035 81 ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMI 126 (291)
T ss_pred HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCH
Confidence 235689999999997753 333332 3456778887776544
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=82.32 E-value=2.1 Score=42.72 Aligned_cols=31 Identities=13% Similarity=0.181 Sum_probs=25.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
++|.|.||+|++|+.|++.|++.. .+++.+.
T Consensus 5 k~ilItGatG~IG~~l~~~L~~~G-~~V~~~~ 35 (349)
T TIGR02622 5 KKVLVTGHTGFKGSWLSLWLLELG-AEVYGYS 35 (349)
T ss_pred CEEEEECCCChhHHHHHHHHHHCC-CEEEEEe
Confidence 579999999999999999998653 4666554
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=82.19 E-value=2.1 Score=39.50 Aligned_cols=31 Identities=23% Similarity=0.113 Sum_probs=25.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||+|.+|+.+++.|.++.. ++..+.
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~-~v~~~~ 36 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGA-KVVIYD 36 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe
Confidence 5799999999999999999987753 554443
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.14 E-value=3.9 Score=36.62 Aligned_cols=74 Identities=7% Similarity=0.170 Sum_probs=44.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|.|+| .|-+|...++.|++.. .+++.++ .. ..+.+.. .+.+. + ....+++.++.++|+||.|++....-
T Consensus 14 ~~vlVvG-GG~va~rka~~Ll~~g-a~V~VIs-p~-~~~~l~~-l~~i~---~-~~~~~~~~dl~~a~lViaaT~d~e~N 84 (157)
T PRK06719 14 KVVVIIG-GGKIAYRKASGLKDTG-AFVTVVS-PE-ICKEMKE-LPYIT---W-KQKTFSNDDIKDAHLIYAATNQHAVN 84 (157)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCC-CEEEEEc-Cc-cCHHHHh-ccCcE---E-EecccChhcCCCceEEEECCCCHHHH
Confidence 5799999 9999999999888643 4666553 22 1122211 01110 0 01123345678899999999877654
Q ss_pred HHH
Q 015441 144 EII 146 (406)
Q Consensus 144 ~~~ 146 (406)
...
T Consensus 85 ~~i 87 (157)
T PRK06719 85 MMV 87 (157)
T ss_pred HHH
Confidence 444
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.09 E-value=2.2 Score=39.99 Aligned_cols=32 Identities=22% Similarity=0.145 Sum_probs=25.9
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+.+|.|.||||.+|+.+++.|.+.. .+++.+.
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G-~~v~~~~ 33 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKG-HNVIAGV 33 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEe
Confidence 4579999999999999999998754 5666554
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.04 E-value=2.1 Score=39.96 Aligned_cols=33 Identities=18% Similarity=0.147 Sum_probs=26.6
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
||.+|.|.||+|.+|+.+++.|.++. .+++.+.
T Consensus 1 m~k~ilItGas~giG~~la~~l~~~g-~~v~~~~ 33 (248)
T PRK06947 1 MRKVVLITGASRGIGRATAVLAAARG-WSVGINY 33 (248)
T ss_pred CCcEEEEeCCCCcHHHHHHHHHHHCC-CEEEEEe
Confidence 45689999999999999999998764 4555443
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=81.88 E-value=2.3 Score=40.51 Aligned_cols=91 Identities=16% Similarity=0.292 Sum_probs=51.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEec---------------cCcCCcc---------ccccccCccccCCCcc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA---------------DRKAGQS---------IGSVFPHLISQDLPTM 119 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s---------------~~~~G~~---------i~~v~p~l~~~~~~~~ 119 (406)
.||+|+| .|-+|.++++.|.....-+++.+-. ....|+. +....|........
T Consensus 28 ~~VlIiG-~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~-- 104 (231)
T PRK08328 28 AKVAVVG-VGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFV-- 104 (231)
T ss_pred CcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEe--
Confidence 5799999 6777999999998654444544421 1223331 12222222111000
Q ss_pred cccCc----ccCCCCCEEEEcCCCcchHHHHhh-C-CCCCEEEE
Q 015441 120 VAVKD----ADFSNVDAVFCCLPHGTTQEIIKG-L-PKSLKIVD 157 (406)
Q Consensus 120 ~~~~~----~~~~~vDvVF~al~~~~s~~~~~~-l-~~G~~VID 157 (406)
..+++ +.+.+.|+||+|+.+..++.+... . +.|+++|.
T Consensus 105 ~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~ 148 (231)
T PRK08328 105 GRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVH 148 (231)
T ss_pred ccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence 01111 124689999999998766665543 2 56888885
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=81.83 E-value=2.2 Score=38.77 Aligned_cols=87 Identities=14% Similarity=0.240 Sum_probs=46.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc--c
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG--T 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~--~ 141 (406)
.++.|+| .|.+|+-+.+.|...- .++ .++..... +.+... ..+.+. ..+ ++....+|++|.||+.. +
T Consensus 24 k~vvV~G-YG~vG~g~A~~lr~~G-a~V-~V~e~DPi-~alqA~---~dGf~v---~~~-~~a~~~adi~vtaTG~~~vi 92 (162)
T PF00670_consen 24 KRVVVIG-YGKVGKGIARALRGLG-ARV-TVTEIDPI-RALQAA---MDGFEV---MTL-EEALRDADIFVTATGNKDVI 92 (162)
T ss_dssp SEEEEE---SHHHHHHHHHHHHTT--EE-EEE-SSHH-HHHHHH---HTT-EE---E-H-HHHTTT-SEEEE-SSSSSSB
T ss_pred CEEEEeC-CCcccHHHHHHHhhCC-CEE-EEEECChH-HHHHhh---hcCcEe---cCH-HHHHhhCCEEEECCCCcccc
Confidence 4799999 9999999999998653 333 33332210 111110 111111 112 23346789999999964 3
Q ss_pred hHHHHhhCCCCCEEEEcCCcc
Q 015441 142 TQEIIKGLPKSLKIVDLSADF 162 (406)
Q Consensus 142 s~~~~~~l~~G~~VIDlSa~f 162 (406)
..+..++++.|+.|.+. +.|
T Consensus 93 ~~e~~~~mkdgail~n~-Gh~ 112 (162)
T PF00670_consen 93 TGEHFRQMKDGAILANA-GHF 112 (162)
T ss_dssp -HHHHHHS-TTEEEEES-SSS
T ss_pred CHHHHHHhcCCeEEecc-CcC
Confidence 57777888889988854 445
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.72 E-value=2 Score=43.34 Aligned_cols=97 Identities=10% Similarity=0.129 Sum_probs=54.6
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-ccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
...++||| +|..++--++.+...-.++-+.+.+++... ..+..-.....+.++...... ++...++|+|+.||++..
T Consensus 130 a~~laiIG-aG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~-~~av~~aDiIvt~T~s~~ 207 (330)
T COG2423 130 ASTLAIIG-AGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSA-EEAVEGADIVVTATPSTE 207 (330)
T ss_pred CcEEEEEC-CcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCH-HHHhhcCCEEEEecCCCC
Confidence 35799999 999999999988863334444555544321 111110000001111111111 234578999999999775
Q ss_pred hHHHH--hhCCCCCEEEEcCCccc
Q 015441 142 TQEII--KGLPKSLKIVDLSADFR 163 (406)
Q Consensus 142 s~~~~--~~l~~G~~VIDlSa~fR 163 (406)
.+. ..++.|..|.-.+++.+
T Consensus 208 --Pil~~~~l~~G~hI~aiGad~p 229 (330)
T COG2423 208 --PVLKAEWLKPGTHINAIGADAP 229 (330)
T ss_pred --CeecHhhcCCCcEEEecCCCCc
Confidence 333 23578888776677643
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=81.66 E-value=2.1 Score=43.23 Aligned_cols=91 Identities=14% Similarity=0.145 Sum_probs=51.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccC---------------cCC----------ccccccccCccccCCCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR---------------KAG----------QSIGSVFPHLISQDLPT 118 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~---------------~~G----------~~i~~v~p~l~~~~~~~ 118 (406)
.||+|+| .|-+|..+++.|...-.-+++.+-.+. .+| +.+.+..|.+....+.
T Consensus 25 ~~VlIiG-~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~- 102 (338)
T PRK12475 25 KHVLIVG-AGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVV- 102 (338)
T ss_pred CcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEe-
Confidence 5899999 677999999999865444554443221 111 1122223322111100
Q ss_pred ccccC----cccCCCCCEEEEcCCCcchHHHHhhC--CCCCEEEE
Q 015441 119 MVAVK----DADFSNVDAVFCCLPHGTTQEIIKGL--PKSLKIVD 157 (406)
Q Consensus 119 ~~~~~----~~~~~~vDvVF~al~~~~s~~~~~~l--~~G~~VID 157 (406)
..++ ++.+.++|+|+.|+++..++.++..+ +.|+..|.
T Consensus 103 -~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~ 146 (338)
T PRK12475 103 -TDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIY 146 (338)
T ss_pred -ccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEE
Confidence 0111 12246899999999988776665432 45777774
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=81.45 E-value=2.4 Score=39.68 Aligned_cols=31 Identities=16% Similarity=0.134 Sum_probs=25.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||+|.+|+.+++.|.++. .+++.+.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g-~~v~~~~ 33 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRG-YRVLAAC 33 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEEe
Confidence 469999999999999999998664 4665543
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=81.31 E-value=2.3 Score=39.37 Aligned_cols=31 Identities=29% Similarity=0.263 Sum_probs=25.6
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEE
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l 94 (406)
+.+|.|.||||.+|+++++.|.++. .+++.+
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~g-~~v~~~ 35 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKEG-AKVVIA 35 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEE
Confidence 3579999999999999999998764 566555
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=81.26 E-value=1.9 Score=43.78 Aligned_cols=94 Identities=10% Similarity=0.073 Sum_probs=50.2
Q ss_pred ccEEEEECcccHHHHHHHHHHHc-CCCceEEEEeccCcCC-ccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLAN-HPYFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~-hp~~elv~l~s~~~~G-~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
..+++|+| +|..++..++.+.. +| ++-+.+.++.... +.+..-.... +.++...... ++...++|+|++||++.
T Consensus 129 a~~l~iiG-aG~QA~~~l~a~~~vr~-i~~V~v~~r~~~~a~~~~~~~~~~-~~~v~~~~~~-~~av~~ADIIvtaT~S~ 204 (346)
T PRK07589 129 SRTMALIG-NGAQSEFQALAFKALLG-IEEIRLYDIDPAATAKLARNLAGP-GLRIVACRSV-AEAVEGADIITTVTADK 204 (346)
T ss_pred CcEEEEEC-CcHHHHHHHHHHHHhCC-ceEEEEEeCCHHHHHHHHHHHHhc-CCcEEEeCCH-HHHHhcCCEEEEecCCC
Confidence 45799999 99999999987764 55 4444555543221 1111000000 1111111111 23347899999999754
Q ss_pred chHHHH--hhCCCCCEEEEcCC
Q 015441 141 TTQEII--KGLPKSLKIVDLSA 160 (406)
Q Consensus 141 ~s~~~~--~~l~~G~~VIDlSa 160 (406)
....+. +.++.|..|+-..+
T Consensus 205 ~~~Pvl~~~~lkpG~hV~aIGs 226 (346)
T PRK07589 205 TNATILTDDMVEPGMHINAVGG 226 (346)
T ss_pred CCCceecHHHcCCCcEEEecCC
Confidence 322222 23567888664444
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=81.24 E-value=1.5 Score=36.30 Aligned_cols=74 Identities=16% Similarity=0.212 Sum_probs=40.6
Q ss_pred EEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccc-cccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGS-VFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 66 VaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~-v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
|.|+| .|..|+++++.|.. ...+++.+..+...-..+.. .++.+.+ +......+....+.++|.++.+++....
T Consensus 1 vvI~G-~g~~~~~i~~~L~~-~~~~vvvid~d~~~~~~~~~~~~~~i~g-d~~~~~~l~~a~i~~a~~vv~~~~~d~~ 75 (116)
T PF02254_consen 1 VVIIG-YGRIGREIAEQLKE-GGIDVVVIDRDPERVEELREEGVEVIYG-DATDPEVLERAGIEKADAVVILTDDDEE 75 (116)
T ss_dssp EEEES--SHHHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHTTSEEEES--TTSHHHHHHTTGGCESEEEEESSSHHH
T ss_pred eEEEc-CCHHHHHHHHHHHh-CCCEEEEEECCcHHHHHHHhcccccccc-cchhhhHHhhcCccccCEEEEccCCHHH
Confidence 57899 78999999999987 44677777654321111110 0111112 1111111222344688999999987654
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=81.24 E-value=1.5 Score=41.67 Aligned_cols=29 Identities=28% Similarity=0.510 Sum_probs=22.0
Q ss_pred EECcccHHHHHHHHHHHcCCC-ceEEEEec
Q 015441 68 LLGASGYTGAEIVRLLANHPY-FGIKLMTA 96 (406)
Q Consensus 68 IvGATG~vG~eLlrlL~~hp~-~elv~l~s 96 (406)
|-||||++|..|++.|+..+. .++.++..
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR 30 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVR 30 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEe
Confidence 579999999999998886544 58888864
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.20 E-value=2.1 Score=40.29 Aligned_cols=31 Identities=16% Similarity=0.109 Sum_probs=25.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.++.|.||+|.+|+++++.|.++. .+++.+.
T Consensus 7 k~~lItGas~gIG~~la~~l~~~g-~~v~~~~ 37 (252)
T PRK07856 7 RVVLVTGGTRGIGAGIARAFLAAG-ATVVVCG 37 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC-CEEEEEe
Confidence 579999999999999999998754 4665553
|
|
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=81.06 E-value=2 Score=44.10 Aligned_cols=90 Identities=14% Similarity=0.278 Sum_probs=52.0
Q ss_pred ccEEEEECcccHHHHHHHHHHHc-CCCceEEEEeccCcCC-----ccccccccCccccCCCcccccCcccCCCCCEEEEc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLAN-HPYFGIKLMTADRKAG-----QSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCC 136 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~-hp~~elv~l~s~~~~G-----~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~a 136 (406)
..+++|+| +|.-++.-++.+.. +|.++-+.+.++.... +.+...++.+ .++...... ++...++|+|++|
T Consensus 155 a~~l~iiG-~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~--~~v~~~~s~-~eav~~ADIVvta 230 (379)
T PRK06199 155 SKVVGLLG-PGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQI--TNVEVVDSI-EEVVRGSDIVTYC 230 (379)
T ss_pred CCEEEEEC-CcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCC--ceEEEeCCH-HHHHcCCCEEEEc
Confidence 46899999 99999999998875 6767777777665321 1111111110 011111111 2335789999999
Q ss_pred CCCcch---H-HHH--hhCCCCCEEE
Q 015441 137 LPHGTT---Q-EII--KGLPKSLKIV 156 (406)
Q Consensus 137 l~~~~s---~-~~~--~~l~~G~~VI 156 (406)
|+.... . .+. ..++.|..|+
T Consensus 231 T~s~~~~~s~~Pv~~~~~lkpG~hv~ 256 (379)
T PRK06199 231 NSGETGDPSTYPYVKREWVKPGAFLL 256 (379)
T ss_pred cCCCCCCCCcCcEecHHHcCCCcEEe
Confidence 975431 1 222 2355677765
|
|
| >KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=80.77 E-value=2.2 Score=42.06 Aligned_cols=37 Identities=22% Similarity=0.358 Sum_probs=29.6
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCceEEEEecc
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD 97 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~ 97 (406)
..+.||+|+||.|-|||-|--||...|.+.-.++.+-
T Consensus 26 ~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi 62 (345)
T KOG1494|consen 26 QRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDI 62 (345)
T ss_pred cCcceEEEEecCCccCccHHHHHhcCcccceeeeeec
Confidence 3458999999999999999888877787765566653
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=80.77 E-value=2.4 Score=40.34 Aligned_cols=30 Identities=17% Similarity=0.075 Sum_probs=24.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l 94 (406)
.++.|.||+|.+|+++++.|.++. .+++.+
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G-~~Vi~~ 36 (258)
T PRK06398 7 KVAIVTGGSQGIGKAVVNRLKEEG-SNVINF 36 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC-CeEEEE
Confidence 479999999999999999998754 355544
|
|
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=80.73 E-value=1.8 Score=45.49 Aligned_cols=76 Identities=14% Similarity=0.146 Sum_probs=44.4
Q ss_pred CCccEEEEECcccHHHHHHHHHHHc------CCCceEEEEecc--C--cCCccccccc---cCccccCCCcccccCcccC
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLAN------HPYFGIKLMTAD--R--KAGQSIGSVF---PHLISQDLPTMVAVKDADF 127 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~------hp~~elv~l~s~--~--~~G~~i~~v~---p~l~~~~~~~~~~~~~~~~ 127 (406)
...+||+|.||+|.+|=.|+-.|++ +..+.|+.+--. . ..|..++-.+ |.+. .+. +..-+.+++
T Consensus 121 ~~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~--~v~-i~~~~~ea~ 197 (452)
T cd05295 121 INPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLR--GIS-VTTDLDVAF 197 (452)
T ss_pred CCceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcC--CcE-EEECCHHHh
Confidence 3458999999999999999999984 334556555321 1 1122222111 2111 111 112223567
Q ss_pred CCCCEEEEcCCC
Q 015441 128 SNVDAVFCCLPH 139 (406)
Q Consensus 128 ~~vDvVF~al~~ 139 (406)
.++|+||++.+.
T Consensus 198 ~daDvvIitag~ 209 (452)
T cd05295 198 KDAHVIVLLDDF 209 (452)
T ss_pred CCCCEEEECCCC
Confidence 889999988764
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=80.71 E-value=2.7 Score=38.21 Aligned_cols=91 Identities=21% Similarity=0.392 Sum_probs=50.0
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEeccC--------------cCCc--------cccccccCccccCCCccccc
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR--------------KAGQ--------SIGSVFPHLISQDLPTMVAV 122 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~--------------~~G~--------~i~~v~p~l~~~~~~~~~~~ 122 (406)
||+|+| .|-+|.++++.|.....-+++.+-.+. +.|+ ++....|......+. ..+
T Consensus 1 ~VlViG-~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~--~~~ 77 (174)
T cd01487 1 KVGIAG-AGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAIN--IKI 77 (174)
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEE--eec
Confidence 589999 688899999999865444454443221 1221 122222222110000 111
Q ss_pred Cc----ccCCCCCEEEEcCCCcchHHHH-hhC-CC-CCEEEEc
Q 015441 123 KD----ADFSNVDAVFCCLPHGTTQEII-KGL-PK-SLKIVDL 158 (406)
Q Consensus 123 ~~----~~~~~vDvVF~al~~~~s~~~~-~~l-~~-G~~VIDl 158 (406)
+. +.+.++|+||.|+.+..++... ..+ .. ++.+|--
T Consensus 78 ~~~~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~ 120 (174)
T cd01487 78 DENNLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCA 120 (174)
T ss_pred ChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 11 2256899999999887776633 333 44 7777643
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=80.58 E-value=3.4 Score=40.96 Aligned_cols=73 Identities=19% Similarity=0.251 Sum_probs=48.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|.|+|.+..||+=|..+|.+. +..++..-++. .++ .+...++|+|+.|.|..
T Consensus 156 k~vvViGrS~iVGkPla~lL~~~-~aTVtichs~T---------------~~l-------~~~~~~ADIvIsAvGkp--- 209 (287)
T PRK14173 156 KEVVVVGRSNIVGKPLAALLLRE-DATVTLAHSKT---------------QDL-------PAVTRRADVLVVAVGRP--- 209 (287)
T ss_pred CEEEEECCCCccHHHHHHHHHHC-CCEEEEeCCCC---------------CCH-------HHHHhhCCEEEEecCCc---
Confidence 58999999999999999999864 34443332211 111 11225789999999854
Q ss_pred HHHh--hCCCCCEEEEcCCcc
Q 015441 144 EIIK--GLPKSLKIVDLSADF 162 (406)
Q Consensus 144 ~~~~--~l~~G~~VIDlSa~f 162 (406)
.+.. .+..|..|||.+-.+
T Consensus 210 ~~i~~~~vk~GavVIDVGin~ 230 (287)
T PRK14173 210 HLITPEMVRPGAVVVDVGINR 230 (287)
T ss_pred CccCHHHcCCCCEEEEccCcc
Confidence 2232 257799999987653
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=80.51 E-value=2.6 Score=40.52 Aligned_cols=92 Identities=20% Similarity=0.290 Sum_probs=52.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEec---------------cCcCCc--------cccccccCccccCCCccc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA---------------DRKAGQ--------SIGSVFPHLISQDLPTMV 120 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s---------------~~~~G~--------~i~~v~p~l~~~~~~~~~ 120 (406)
.||+|+| .|-+|.++++.|...-.-+++.+-. ..+.|+ .+.+..|+.....+. .
T Consensus 25 ~~VlvvG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~--~ 101 (240)
T TIGR02355 25 SRVLIVG-LGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPIN--A 101 (240)
T ss_pred CcEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEe--c
Confidence 5899999 7778999999998543334443321 122332 122233332211110 1
Q ss_pred ccCc----ccCCCCCEEEEcCCCcchHHHHhh-C-CCCCEEEEc
Q 015441 121 AVKD----ADFSNVDAVFCCLPHGTTQEIIKG-L-PKSLKIVDL 158 (406)
Q Consensus 121 ~~~~----~~~~~vDvVF~al~~~~s~~~~~~-l-~~G~~VIDl 158 (406)
.+++ +.+.++|+||.|+.+..++.++.. . ..++++|.-
T Consensus 102 ~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~ 145 (240)
T TIGR02355 102 KLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSG 145 (240)
T ss_pred cCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 1111 124689999999998877766643 3 568888853
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=80.35 E-value=2.8 Score=41.37 Aligned_cols=96 Identities=11% Similarity=0.043 Sum_probs=50.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCcccccccc---CccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFP---HLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p---~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
-+|.|.||+|-+|..+++++...-..+++.+.+.......+..-++ .+...+......+....-.++|+||.|++..
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g~~ 235 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVGGE 235 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCCcH
Confidence 4799999999999999987765432256665543211011100000 0000010000001000013789999999876
Q ss_pred chHHHHhhCCCCCEEEEcC
Q 015441 141 TTQEIIKGLPKSLKIVDLS 159 (406)
Q Consensus 141 ~s~~~~~~l~~G~~VIDlS 159 (406)
...+....+..+.++|+++
T Consensus 236 ~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 236 ISDTVISQMNENSHIILCG 254 (345)
T ss_pred HHHHHHHHhccCCEEEEEe
Confidence 5555556666666667654
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=80.27 E-value=3.3 Score=41.18 Aligned_cols=74 Identities=11% Similarity=0.229 Sum_probs=49.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcC---CCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANH---PYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~h---p~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
.+|.|+|.+..||+=|.-+|.++ ....+....+.. .++ .+....+|+|+.|.|..
T Consensus 160 k~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t---------------~~l-------~~~~~~ADIvI~Avg~~ 217 (295)
T PRK14174 160 KHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT---------------KDI-------PSYTRQADILIAAIGKA 217 (295)
T ss_pred CEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc---------------hhH-------HHHHHhCCEEEEecCcc
Confidence 58999999999999999998863 233443333211 011 12235789999999754
Q ss_pred chHHHHh--hCCCCCEEEEcCCcc
Q 015441 141 TTQEIIK--GLPKSLKIVDLSADF 162 (406)
Q Consensus 141 ~s~~~~~--~l~~G~~VIDlSa~f 162 (406)
++.. .+..|..|||.+-++
T Consensus 218 ---~li~~~~vk~GavVIDVgi~~ 238 (295)
T PRK14174 218 ---RFITADMVKPGAVVIDVGINR 238 (295)
T ss_pred ---CccCHHHcCCCCEEEEeeccc
Confidence 3332 257799999998775
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=80.03 E-value=5 Score=41.94 Aligned_cols=87 Identities=8% Similarity=0.021 Sum_probs=49.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.+|+|+| .|.+|+.+++.|...- .+++.. +... .+...... .+.... .+ .+.+.++|+||.|++....
T Consensus 213 k~VlViG-~G~IG~~vA~~lr~~G-a~ViV~-d~dp-~ra~~A~~---~G~~v~---~l-~eal~~aDVVI~aTG~~~vI 281 (425)
T PRK05476 213 KVVVVAG-YGDVGKGCAQRLRGLG-ARVIVT-EVDP-ICALQAAM---DGFRVM---TM-EEAAELGDIFVTATGNKDVI 281 (425)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCC-CEEEEE-cCCc-hhhHHHHh---cCCEec---CH-HHHHhCCCEEEECCCCHHHH
Confidence 4799999 8999999999998764 354443 3221 11111000 011111 11 1234579999999975432
Q ss_pred -HHHHhhCCCCCEEEEcCCcc
Q 015441 143 -QEIIKGLPKSLKIVDLSADF 162 (406)
Q Consensus 143 -~~~~~~l~~G~~VIDlSa~f 162 (406)
.+....+..|..++ +.+-|
T Consensus 282 ~~~~~~~mK~Gaili-NvG~~ 301 (425)
T PRK05476 282 TAEHMEAMKDGAILA-NIGHF 301 (425)
T ss_pred HHHHHhcCCCCCEEE-EcCCC
Confidence 23444456788888 44544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 406 | ||||
| 1xyg_A | 359 | X-Ray Structure Of Gene Product From Arabidopsis Th | 1e-179 | ||
| 2cvo_A | 366 | Crystal Structure Of Putative N-Acetyl-Gamma-Glutam | 1e-164 | ||
| 1vkn_A | 351 | Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosph | 1e-76 | ||
| 2i3a_A | 352 | Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosph | 7e-51 | ||
| 2g17_A | 337 | The Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate | 8e-50 | ||
| 2nqt_A | 352 | Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosph | 1e-49 | ||
| 3dr3_A | 337 | Structure Of Idp00107, A Potential N-Acetyl-Gamma- | 3e-49 | ||
| 2ozp_A | 345 | Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosph | 1e-45 | ||
| 2ep5_A | 350 | Structural Study Of Project Id St1242 From Sulfolob | 4e-11 | ||
| 1ys4_A | 354 | Structure Of Aspartate-Semialdehyde Dehydrogenase F | 6e-10 | ||
| 4dpk_A | 359 | Structure Of Malonyl-coenzyme A Reductase From Cren | 8e-07 | ||
| 2yv3_A | 331 | Crystal Structure Of Aspartate Semialdehyde Dehydro | 2e-05 | ||
| 2qz9_A | 336 | Crystal Structure Of Aspartate Semialdehyde Dehydro | 1e-04 | ||
| 2gyy_A | 366 | Structure Of Aspartate Semialdehyde Dehydrogenase ( | 6e-04 |
| >pdb|1XYG|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At2g19940 Length = 359 | Back alignment and structure |
|
| >pdb|2CVO|A Chain A, Crystal Structure Of Putative N-Acetyl-Gamma-Glutamyl- Phosphate Reductase (Ak071544) From Rice (Oryza Sativa) Length = 366 | Back alignment and structure |
|
| >pdb|1VKN|A Chain A, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate Reductase (Tm1782) From Thermotoga Maritima At 1.80 A Resolution Length = 351 | Back alignment and structure |
|
| >pdb|2I3A|A Chain A, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate Reductase (Rv1652) From Mycobacterium Tuberculosis Length = 352 | Back alignment and structure |
|
| >pdb|2G17|A Chain A, The Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate Reductase From Salmonella Typhimurium Length = 337 | Back alignment and structure |
|
| >pdb|2NQT|A Chain A, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate Reductase (Rv1652) From Mycobacterium Tuberculosis At 1.58 A Resolution Length = 352 | Back alignment and structure |
|
| >pdb|3DR3|A Chain A, Structure Of Idp00107, A Potential N-Acetyl-Gamma- Glutamylphosphate Reductase From Shigella Flexneri Length = 337 | Back alignment and structure |
|
| >pdb|2OZP|A Chain A, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate Reductase (Ttha1904) From Thermus Thermophilus Length = 345 | Back alignment and structure |
|
| >pdb|2EP5|A Chain A, Structural Study Of Project Id St1242 From Sulfolobus Tokodaii Strain7 Length = 350 | Back alignment and structure |
|
| >pdb|1YS4|A Chain A, Structure Of Aspartate-Semialdehyde Dehydrogenase From Methanococcus Jannaschii Length = 354 | Back alignment and structure |
|
| >pdb|4DPK|A Chain A, Structure Of Malonyl-coenzyme A Reductase From Crenarchaeota Length = 359 | Back alignment and structure |
|
| >pdb|2YV3|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase From Thermus Thermophilus Hb8 Length = 331 | Back alignment and structure |
|
| >pdb|2QZ9|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase Ii From Vibrio Cholerae Length = 336 | Back alignment and structure |
|
| >pdb|2GYY|A Chain A, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh) From Streptococcus Pneumoniae Length = 366 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 406 | |||
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 0.0 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 0.0 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 0.0 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 0.0 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 0.0 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 2e-17 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 3e-17 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 1e-15 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 3e-06 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 9e-06 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 5e-05 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 1e-04 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 3e-04 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 5e-04 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 7e-04 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 8e-04 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 9e-04 |
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A Length = 359 | Back alignment and structure |
|---|
Score = 599 bits (1547), Expect = 0.0
Identities = 299/358 (83%), Positives = 326/358 (91%)
Query: 49 SLQVEDGKTQKSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVF 108
S +V + K EK +RIGLLGASGYTGAEIVRLLANHP+F + LMTADRKAGQS+ SVF
Sbjct: 2 SFRVSASSSVKPEKDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVF 61
Query: 109 PHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVS 168
PHL +Q LPT+V+VKDADFS VDAVFCCLPHGTTQEIIK LP +LKIVDLSADFRLR+++
Sbjct: 62 PHLRAQKLPTLVSVKDADFSTVDAVFCCLPHGTTQEIIKELPTALKIVDLSADFRLRNIA 121
Query: 169 EYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLI 228
EYEEWYGQPH A +LQKE VYGLTEI REDIK ARLVANPGCYPT+IQLPLVPL++ANLI
Sbjct: 122 EYEEWYGQPHKAVELQKEVVYGLTEILREDIKKARLVANPGCYPTTIQLPLVPLLKANLI 181
Query: 229 QYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVT 288
++ NIIIDAKSGVSGAGRGAKEANLYSEIAEGI SYGVTRHRHVPEIEQGL+ A SKVT
Sbjct: 182 KHENIIIDAKSGVSGAGRGAKEANLYSEIAEGISSYGVTRHRHVPEIEQGLSDVAQSKVT 241
Query: 289 VSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVR 348
VSFTPHLMPMIRGMQSTIYVEMAPGV EDL+QQLK SYE EEFVK+L++GVVPRTHNVR
Sbjct: 242 VSFTPHLMPMIRGMQSTIYVEMAPGVRTEDLHQQLKTSYEDEEFVKVLDEGVVPRTHNVR 301
Query: 349 GSNYCLMNVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMLGFPENTGLLYQPLFP 406
GSNYC M+VFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMLG+PE TGLL+QPLFP
Sbjct: 302 GSNYCHMSVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMLGYPETTGLLHQPLFP 359
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 Length = 351 | Back alignment and structure |
|---|
Score = 553 bits (1427), Expect = 0.0
Identities = 150/349 (42%), Positives = 215/349 (61%), Gaps = 5/349 (1%)
Query: 58 QKSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLP 117
+R G++GA+GYTG E+VRLL NHP I +++ AG+ + +FP + +
Sbjct: 8 HHHHHMIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSIL 67
Query: 118 TMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQP 177
+ + N D +F LP G + ++++ L +KI+DL ADFR D Y EWYG+
Sbjct: 68 SEFDPEKVS-KNCDVLFTALPAGASYDLVRELKG-VKIIDLGADFRFDDPGVYREWYGKE 125
Query: 178 HIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDA 237
+ K VYGL E+ RE+IKNA++V NPGCYPTS+ L L P ++ NL+ I++DA
Sbjct: 126 LSGYENIK-RVYGLPELHREEIKNAQVVGNPGCYPTSVILALAPALKHNLVDPETILVDA 184
Query: 238 KSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMP 297
KSGVSGAGR K L+SE+ E + Y V +HRHVPE+EQ L + KV V FTPHL+P
Sbjct: 185 KSGVSGAGRKEKVDYLFSEVNESLRPYNVAKHRHVPEMEQELGKISGKKVNVVFTPHLVP 244
Query: 298 MIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNV 357
M RG+ STIYV+ ++E++++ Y++E FV +L G+ P T GSN+ + +
Sbjct: 245 MTRGILSTIYVKTDK--SLEEIHEAYLEFYKNEPFVHVLPMGIYPSTKWCYGSNHVFIGM 302
Query: 358 FPDRIPGRAIIISVIDNLVKGASGQALQNLNIMLGFPENTGLLYQPLFP 406
+ I++S IDNLVKGASGQA+QN+NIM G E GL + P++P
Sbjct: 303 QMEERTNTLILMSAIDNLVKGASGQAVQNMNIMFGLDETKGLEFTPIYP 351
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} Length = 345 | Back alignment and structure |
|---|
Score = 536 bits (1384), Expect = 0.0
Identities = 113/350 (32%), Positives = 173/350 (49%), Gaps = 12/350 (3%)
Query: 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVA 121
+ + ++GASGY G E +RL +HPY +K +T+ R AG+ + V P+L + +
Sbjct: 3 GKKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNL--RGRTNLKF 60
Query: 122 VKDADFSNVDAVFCCLPHGTTQEIIKGLPKS-LKIVDLSADFRLRDVSEYEEWYGQPHIA 180
V D + LPHG +VDLSADFRL+D Y +YG H
Sbjct: 61 VPPEKLEPADILVLALPHGVFAREFDRYSALAPVLVDLSADFRLKDPELYRRYYG-EHPR 119
Query: 181 PDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSG 240
PDL VY + E+ RE +K A +A GC T+ L L PL++A +++ I +
Sbjct: 120 PDLLGRFVYAVPELYREALKGADWIAGAGCNATATLLGLYPLLKAGVLKPTPIFVTLLIS 179
Query: 241 VSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMIR 300
S G A A+ + E A I Y T HRH E+ + L + V T +R
Sbjct: 180 TSAGGAEASPASHHPERAGSIRVYKPTGHRHTAEVVENL----PGRPEVHLTAIATDRVR 235
Query: 301 GMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKG----VVPRTHNVRGSNYCLMN 356
G+ T + G + D++Q + +Y E F++L+++ P V+G+NY +
Sbjct: 236 GILMTAQCFVQDGWSERDVWQAYREAYAGEPFIRLVKQKKGVHRYPDPRFVQGTNYADIG 295
Query: 357 VFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMLGFPENTGLLYQPLFP 406
+ GR ++++ IDNLVKG +G ALQ LN+ +G+PE GL + L P
Sbjct: 296 FELEEDTGRLVVMTAIDNLVKGTAGHALQALNVRMGWPETLGLDFPGLHP 345
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A Length = 352 | Back alignment and structure |
|---|
Score = 526 bits (1357), Expect = 0.0
Identities = 129/359 (35%), Positives = 185/359 (51%), Gaps = 16/359 (4%)
Query: 56 KTQKSEKQVRIGLLGASGYTGAEIVRLLANHPYFG-----IKLMTADRKAGQSIGSVFPH 110
+ ++ ++ + GASGY G EI+RLL HP + I +TA AG ++G PH
Sbjct: 2 QNRQVANATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPH 61
Query: 111 LISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEY 170
L + + A DAVF LPHG + + + L I+D ADFRL D + +
Sbjct: 62 LTPLAHRVVEPTEAAVLGGHDAVFLALPHGHSAVLAQQLSPETLIIDCGADFRLTDAAVW 121
Query: 171 EEWYGQPHIAPDLQKEAVYGLTEIS--REDIKNARLVANPGCYPTSIQLPLVPLIQANLI 228
E +YG H YGL E+ R+ ++ R +A PGCYPT+ L L P + A+LI
Sbjct: 122 ERFYGSSH-----AGSWPYGLPELPGARDQLRGTRRIAVPGCYPTAALLALFPALAADLI 176
Query: 229 QYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVT-RHRHVPEIEQGLTGFASSKV 287
+ + + A SG SGAGR A L +E+ +Y + HRH PEI QGL V
Sbjct: 177 E-PAVTVVAVSGTSGAGRAATTDLLGAEVIGSARAYNIAGVHRHTPEIAQGLRAVTDRDV 235
Query: 288 TVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNV 347
+VSFTP L+P RG+ +T + L + +Y E F+ L+ +G +PRT V
Sbjct: 236 SVSFTPVLIPASRGILATCTARTRSPL--SQLRAAYEKAYHAEPFIYLMPEGQLPRTGAV 293
Query: 348 RGSNYCLMNVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMLGFPENTGLLYQPLFP 406
GSN + V D + I+ IDNLVKG +G A+Q++N+ LG+PE GL + P
Sbjct: 294 IGSNAAHIAVAVDEDAQTFVAIAAIDNLVKGTAGAAVQSMNLALGWPETDGLSVVGVAP 352
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A Length = 337 | Back alignment and structure |
|---|
Score = 509 bits (1313), Expect = 0.0
Identities = 129/348 (37%), Positives = 182/348 (52%), Gaps = 18/348 (5%)
Query: 60 SEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK---AGQSIGSVFPHLISQ-D 115
S + ++GASGY GAE+V + HP+ I +T + AG+ I + P L +
Sbjct: 1 SNAMLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVE 60
Query: 116 LPTMVAVKDADF-SNVDAVFCCLPHGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEW 173
LP ++F VD VF H + ++ + DLS FR+ D + YE++
Sbjct: 61 LPLQPMSDISEFSPGVDVVFLATAHEVSHDLAPQFLEAGCVVFDLSGAFRVNDATFYEKY 120
Query: 174 YGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRN- 232
YG H P+L ++A YGL E +K A L+A PGCYPT+ QL L PLI A+L+
Sbjct: 121 YGFTHQYPELLEQAAYGLAEWCGNKLKEANLIAVPGCYPTAAQLALKPLIDADLLDLNQW 180
Query: 233 IIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFT 292
+I+A SGVSGAGR A +N + E++ + YGV HRH PEI L V FT
Sbjct: 181 PVINATSGVSGAGRKAAISNSFCEVS--LQPYGVFTHRHQPEIATHL------GADVIFT 232
Query: 293 PHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNY 352
PHL RG+ TI + GVT + Q L+ +Y H+ V+L +KG VP NV G +
Sbjct: 233 PHLGNFPRGILETITCRLKSGVTQAQVAQALQQAYAHKPLVRLYDKG-VPALKNVVGLPF 291
Query: 353 CLMNVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMLGFPENTGLL 400
C + II++ DNL+KGA+ QA+Q NI G+ E L+
Sbjct: 292 CDIGFAVQ--GEHLIIVATEDNLLKGAAAQAVQCANIRFGYAETQSLI 337
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} Length = 350 | Back alignment and structure |
|---|
Score = 81.9 bits (203), Expect = 2e-17
Identities = 83/367 (22%), Positives = 137/367 (37%), Gaps = 71/367 (19%)
Query: 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA-DRKAGQSIGSVFPHLISQDLP--- 117
++++ LLG++G G ++V++LA HPY + ++A K G+ + D+P
Sbjct: 3 DKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEV 62
Query: 118 ---TMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIV-DLSADFRLR-DVSEYEE 172
+V+ D +VD V LP+ + I L K+ KIV ++ FR+ DV
Sbjct: 63 QDLPIVSTNYEDHKDVDVVLSALPNELAESIELELVKNGKIVVSNASPFRMDPDV----- 117
Query: 173 WYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQL--PLVPLIQANLIQY 230
P I P++ E + L LV NP C T+ + P+ PLI+
Sbjct: 118 ----PLINPEINWEHLELLKFQKERKGWKGILVKNPNC--TAAIMSMPIKPLIEIATK-- 169
Query: 231 RNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEI---EQGLT------- 280
III VSGAG I I +P I E +
Sbjct: 170 SKIIITTLQAVSGAGYNGISF---MAIEGNI----------IPYIKGEEDKIAKELTKLN 216
Query: 281 ------GFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIED----------LYQQLK 324
+ + + T +P G I + + IE+ L QQ
Sbjct: 217 GKLENNQIIPANLDSTVTSIRVPTRVGHMGVINIVTNERINIEEIKKTLKNFKSLPQQKN 276
Query: 325 ISYEHEEFVKLLEKGV--VPRTHNVRGSNYCLMNVFPDRI---PGRAIIISVIDNLVKGA 379
+ ++ + + ++ P S M V RI ++ + DNLV+GA
Sbjct: 277 LPTAPKQPIIVRDEEDRPQPIIDVNAESG---MAVTVGRIRHENNVLRLVVLGDNLVRGA 333
Query: 380 SGQALQN 386
+G +
Sbjct: 334 AGITILT 340
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} Length = 354 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 3e-17
Identities = 70/373 (18%), Positives = 148/373 (39%), Gaps = 72/373 (19%)
Query: 57 TQKSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA-DRKAGQSIGSVFPHLISQD 115
++ + ++++G+LGA+G G V+LLA+HP F + + A +R AG+ +D
Sbjct: 2 SKGEKMKIKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRD 61
Query: 116 LPTMVA--------VKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIV-DLSADFRLR- 165
+P + K +F +VD VF LP ++ K K++ ++ +R+
Sbjct: 62 IPENIKDMVVIPTDPKHEEFEDVDIVFSALPSDLAKKFEPEFAKEGKLIFSNASAYRMEE 121
Query: 166 DVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQL--PLVPLI 223
DV P + P++ + + + + + ++ NP C ++I L P++
Sbjct: 122 DV---------PLVIPEVNADHLELIEIQREKRGWDGAIITNPNC--STICAVITLKPIM 170
Query: 224 QANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEI---EQGLT 280
+ + I VSGAG + + I + + +P I E+ +
Sbjct: 171 DKFGL--EAVFIATMQAVSGAGYNGVPS-M--AILDNL----------IPFIKNEEEKMQ 215
Query: 281 -------------GFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLK--- 324
+ +S + + + +I G +I+V+ G E++ + +
Sbjct: 216 TESLKLLGTLKDGKVELANFKISASCNRVAVIDGHTESIFVKTKEGAEPEEIKEVMDKFD 275
Query: 325 -------ISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRI---PGRAI-IISVID 373
+Y ++ PR G+ M++ RI P + ++
Sbjct: 276 PLKDLNLPTYAKPIVIREEIDRPQPRLDRNEGNG---MSIVVGRIRKDPIFDVKYTALEH 332
Query: 374 NLVKGASGQALQN 386
N ++GA+G ++ N
Sbjct: 333 NTIRGAAGASVLN 345
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} Length = 381 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 1e-15
Identities = 75/383 (19%), Positives = 127/383 (33%), Gaps = 87/383 (22%)
Query: 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA-DRKAGQSIGSVFPHLISQDLPTMV 120
+ G+LGA+G G + LL+ HP F I + A R AG+ ++ LP
Sbjct: 18 SVKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETE 77
Query: 121 A---VKDA----DFSNVDAVFCCLPHGTTQEIIKGLPKSLKIV-DLSADFRLR-DVSEYE 171
V++ +F D VF L +I K ++ V + ++R DV
Sbjct: 78 QDIVVQECKPEGNFLECDVVFSGLDADVAGDIEKSFVEAGLAVVSNAKNYRREKDV---- 133
Query: 172 EWYGQPHIAP-----DLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQL--PLVPLIQ 224
P + P + +S+ K ++ C ++ L PL PL++
Sbjct: 134 -----PLVVPIVNPEHIDVVENKVKQAVSKGGKKPGFIICISNC--STAGLVAPLKPLVE 186
Query: 225 ANLIQYRNIIIDAKSGVSGAGRGAKEANLYS-EIAEGIYSYGVTRHRHVPEI-------- 275
+ +SGAG + +I + I VP I
Sbjct: 187 K-FGPIDALTTTTLQAISGAG---FSPGVSGMDILDNI----------VPYISGEEDKLE 232
Query: 276 -------------EQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMA--PGVTIEDLY 320
S++ VS + +P+I G I + A P ++ED+
Sbjct: 233 WETKKILGGVNAEGTEFVPIPESEMKVSAQCNRVPVIDGHTECISLRFANRPAPSVEDVK 292
Query: 321 QQLKISYEHEEFVKLL----EKGVV---------PRTHNVRGSNYCLMNVFPDRI---PG 364
Q L+ YE ++ + PR R S V RI
Sbjct: 293 QCLR-EYECAASKLGCHSAPKQTIHVLDQPDRPQPRLDRDRDSG---YGVSVGRIREDSL 348
Query: 365 RAI-IISVIDNLVKGASGQALQN 386
++ + N + GA+G +
Sbjct: 349 LDFKMVVLSHNTIIGAAGAGILI 371
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* Length = 336 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 3e-06
Identities = 41/199 (20%), Positives = 81/199 (40%), Gaps = 45/199 (22%)
Query: 62 KQVRIGLLGASGYTGAEIVRLLA--NHPYFGIKLMTADRKAGQSI---GSVFPHLISQDL 116
+Q + + GA+G G ++ +L P + L+ ++R G++ G
Sbjct: 2 QQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTV-------- 53
Query: 117 PTMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLK----IVDLSADFRLR-DVSEYE 171
+ V++ D+S V + + P + + ++D ++ FR D+
Sbjct: 54 -RVQNVEEFDWSQVHIALFSAGGELSAKW---APIAAEAGVVVIDNTSHFRYDYDI---- 105
Query: 172 EWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQL--PLVPLIQANLIQ 229
P + P++ EA+ + +N ++ANP C ++IQ+ L P+ A I
Sbjct: 106 -----PLVVPEVNPEAI--------AEFRNRNIIANPNC--STIQMLVALKPIYDAVGI- 149
Query: 230 YRNIIIDAKSGVSGAGRGA 248
I + VSGAG+
Sbjct: 150 -ERINVTTYQSVSGAGKAG 167
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 Length = 340 | Back alignment and structure |
|---|
Score = 46.3 bits (111), Expect = 9e-06
Identities = 36/198 (18%), Positives = 67/198 (33%), Gaps = 44/198 (22%)
Query: 62 KQVRIGLLGASGYTGAEIVRLLA--NHPYFGIKLMTADRKAGQSI---GSVFPHLISQDL 116
+ + + ++GA+G G +V LL + P + L+ + AGQ + S
Sbjct: 5 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSL-------- 56
Query: 117 PTMVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLK----IVDLSADFRLRDVSEYEE 172
+ V DFS+V F ++ ++ ++DLS
Sbjct: 57 -RVGDVDSFDFSSVGLAFFAAAAEVSRAH---AERARAAGCSVIDLSGALEPSVA----- 107
Query: 173 WYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQL--PLVPLIQANLIQY 230
P + + E + L+++P + +L L PL+
Sbjct: 108 ----PPVMVSVNAERL--------ASQAAPFLLSSPCA--VAAELCEVLAPLLATLDC-- 151
Query: 231 RNIIIDAKSGVSGAGRGA 248
R + + A VS GR
Sbjct: 152 RQLNLTACLSVSSLGREG 169
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 215 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 5e-05
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKD 124
R+ L GA+G TG ++ + + P K++ RKA + + + +
Sbjct: 7 RVLLAGATGLTGEHLLDRILSEPTL-AKVIAPARKALAEH-----PRLDNPVGPLAELLP 60
Query: 125 ADFSNVDAVFCCLPHGTTQE 144
++D FCCL GTT +
Sbjct: 61 QLDGSIDTAFCCL--GTTIK 78
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 3r14_A* Length = 221 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 1e-04
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 4/82 (4%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMT---ADRKAGQSIGSVFPHLISQDLPTMVA 121
I +LGA+G + L + I L R + I +I
Sbjct: 7 YITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGX 66
Query: 122 VKDADFSNVDAVFCCLPHGTTQ 143
++ A +N + VF +
Sbjct: 67 LEQA-VTNAEVVFVGAMESGSD 87
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A Length = 366 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 3e-04
Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 43/194 (22%)
Query: 65 RIGLLGASGYTGAEIVRLLA--NHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAV 122
+ ++GA+G GA+++++L P I+ + + R AG+S+ F QD+ T+
Sbjct: 4 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSL--KFK---DQDI-TIEET 57
Query: 123 KDADFSNVDAVFCCLPHGTTQEIIKGLPKSLK----IVDLSADFRL-RDVSEYEEWYGQP 177
+ F VD T+ + P ++K +VD ++ FR DV P
Sbjct: 58 TETAFEGVDIALFSAGSSTSAKY---APYAVKAGVVVVDNTSYFRQNPDV---------P 105
Query: 178 HIAPDLQKEAVYGLTEISREDIKNAR-LVANPGCYPTSIQL--PLVPLIQANLIQYRNII 234
+ P E++ + ++A P C ++IQ+ L P+ Q + II
Sbjct: 106 LVVP-----------EVNAHALDAHNGIIACPNC--STIQMMVALEPVRQKWGL--DRII 150
Query: 235 IDAKSGVSGAGRGA 248
+ VSGAG GA
Sbjct: 151 VSTYQAVSGAGMGA 164
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A Length = 370 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 5e-04
Identities = 28/208 (13%), Positives = 61/208 (29%), Gaps = 61/208 (29%)
Query: 64 VRIGLLGASGYTGAEIV-RLLA--NHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMV 120
+R+GL+G G G+ ++ R++ + + + + P+
Sbjct: 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPA-----PNFGKDAGMLHD 55
Query: 121 AVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLK------IVDLSADFRLR-DVSEYEEW 173
A +DAV C T+++ P + +D ++ R+ +
Sbjct: 56 AFDIESLKQLDAVITCQGGSYTEKV---YPALRQAGWKGYWIDAASTLRMDKEA------ 106
Query: 174 YGQPHIAPDLQKEAVYGLTEISREDIKNA-----RLVANPGCYPTSIQL--PLVPLIQAN 226
++ + I + + C T + L L +
Sbjct: 107 ---IITLD-----------PVNLKQILHGIHHGTKTFVGGNC--TVSLMLMALGGLYERG 150
Query: 227 LIQ------YRNIIIDAKSGVSGAGRGA 248
L++ Y+ SGAG
Sbjct: 151 LVEWMSAMTYQ--------AASGAGAQN 170
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A Length = 242 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 7e-04
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 68 LLGASGYTGAEIVRLLANHPYFG-IKLMTADRKAGQSIGSVFPHLISQ--DLPTMVAVKD 124
+LGASG TG +++ + F + L+ R+ + ++ + D +
Sbjct: 23 ILGASGETGRVLLKEILEQGLFSKVTLIG--RRKLTFDEEAYKNVNQEVVDFEKLDDYAS 80
Query: 125 ADFSNVDAVFCCLPHGTTQE 144
A F D FCCL GTT+
Sbjct: 81 A-FQGHDVGFCCL--GTTRG 97
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} Length = 118 | Back alignment and structure |
|---|
Score = 37.9 bits (88), Expect = 8e-04
Identities = 22/98 (22%), Positives = 32/98 (32%), Gaps = 3/98 (3%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKD 124
I ++GA G G I LL + + + D A + + D +
Sbjct: 7 NICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAK 65
Query: 125 ADFSNVDAVFCCLPHGTTQEIIKGLPKS-LKIVDLSAD 161
A DAV P T I K + DL+ D
Sbjct: 66 A-LGGFDAVISAAPFFLTPIIAKAAKAAGAHYFDLTED 102
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} Length = 236 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 9e-04
Identities = 15/85 (17%), Positives = 25/85 (29%), Gaps = 1/85 (1%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKD 124
+ +LGA G ++ LA+ L +I D+ A+K
Sbjct: 25 NVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQ 84
Query: 125 ADFSNVDAVFCCLPHGTTQEIIKGL 149
A D V+ L +
Sbjct: 85 A-MQGQDIVYANLTGEDLDIQANSV 108
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 406 | |||
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 100.0 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 100.0 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 100.0 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 100.0 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 100.0 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 100.0 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 100.0 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 100.0 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 100.0 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 100.0 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 100.0 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 100.0 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 100.0 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 100.0 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 100.0 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 100.0 | |
| 2yv3_A | 331 | Aspartate-semialdehyde dehydrogenase; aspartate pa | 100.0 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 100.0 | |
| 1rm4_O | 337 | Glyceraldehyde 3-phosphate dehydrogenase A; rossma | 100.0 | |
| 1gad_O | 330 | D-glyceraldehyde-3-phosphate dehydrogenase; oxidor | 100.0 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 100.0 | |
| 1hdg_O | 332 | Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o | 100.0 | |
| 3cmc_O | 334 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m | 100.0 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 100.0 | |
| 2x5j_O | 339 | E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid | 100.0 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 100.0 | |
| 3b1j_A | 339 | Glyceraldehyde 3-phosphate dehydrogenase (NADP+); | 100.0 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 100.0 | |
| 2g82_O | 331 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G | 100.0 | |
| 2d2i_A | 380 | Glyceraldehyde 3-phosphate dehydrogenase; rossmann | 100.0 | |
| 3lvf_P | 338 | GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase | 100.0 | |
| 2b4r_O | 345 | Glyceraldehyde-3-phosphate dehydrogenase; SGPP, st | 100.0 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 100.0 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 100.0 | |
| 1obf_O | 335 | Glyceraldehyde 3-phosphate dehydrogenase; glycolyt | 100.0 | |
| 2ep7_A | 342 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; o | 100.0 | |
| 3doc_A | 335 | Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, | 100.0 | |
| 3hja_A | 356 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; n | 99.98 | |
| 4dib_A | 345 | GAPDH, glyceraldehyde 3-phosphate dehydrogenase; n | 99.98 | |
| 3h9e_O | 346 | Glyceraldehyde-3-phosphate dehydrogenase, testis-; | 99.97 | |
| 3pym_A | 332 | GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase | 99.97 | |
| 3v1y_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 99.97 | |
| 3ids_C | 359 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, g | 99.97 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 99.95 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 99.49 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 98.36 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 98.33 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.3 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 98.29 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 98.05 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.96 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 97.86 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 97.73 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 97.73 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 97.64 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 97.62 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.53 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 97.5 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 97.47 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 97.46 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 97.41 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 97.41 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 97.4 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 97.39 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 97.39 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.38 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 97.36 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 97.35 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 97.35 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 97.35 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 97.34 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 97.31 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 97.31 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 97.3 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 97.29 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 97.27 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 97.26 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 97.26 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 97.26 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 97.24 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 97.24 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 97.22 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 97.21 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 97.16 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 97.16 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 97.13 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 97.12 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 97.12 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 97.12 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 97.11 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 97.11 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 97.09 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 97.09 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 97.08 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 97.07 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 97.01 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 97.0 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 96.97 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.96 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 96.94 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 96.92 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 96.92 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 96.91 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 96.89 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 96.87 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 96.86 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 96.86 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 96.81 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 96.81 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 96.78 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 96.76 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 96.76 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 96.73 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 96.71 | |
| 1r0k_A | 388 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; N | 96.7 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 96.67 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 96.63 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 96.63 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 96.63 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 96.62 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 96.62 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 96.61 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 96.6 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 96.59 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 96.55 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 96.49 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 96.48 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 96.47 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 96.46 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 96.46 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 96.45 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 96.45 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 96.45 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 96.4 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 96.38 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 96.38 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 96.37 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 96.35 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 96.34 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 96.3 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 96.29 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 96.27 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 96.27 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 96.27 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 96.25 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 96.24 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 96.23 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 96.22 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 96.22 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 96.21 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 96.2 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 96.19 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 96.16 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 96.14 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 96.13 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 96.11 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 96.1 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 96.09 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 96.09 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 96.09 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 96.06 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 96.06 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 96.06 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 96.05 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 96.05 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 96.05 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 96.04 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 96.02 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 96.0 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 95.96 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 95.93 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 95.92 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 95.87 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 95.86 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 95.86 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 95.85 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 95.84 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 95.84 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 95.82 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 95.82 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 95.81 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 95.79 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 95.78 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 95.77 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 95.77 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 95.77 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 95.75 | |
| 3nkl_A | 141 | UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo | 95.73 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 95.69 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 95.68 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 95.67 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 95.65 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 95.65 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 95.64 | |
| 3a06_A | 376 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; M | 95.61 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 95.61 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 95.61 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 95.59 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 95.58 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 95.58 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 95.57 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 95.55 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 95.54 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 95.52 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 95.5 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 95.49 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 95.46 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 95.45 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 95.44 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 95.44 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 95.42 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 95.42 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 95.42 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 95.42 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 95.42 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 95.39 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 95.39 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 95.35 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 95.33 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 95.33 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 95.33 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 95.31 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 95.31 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 95.3 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 95.29 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 95.29 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 95.25 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 95.24 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 95.23 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 95.22 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 95.21 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 95.21 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 95.1 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 95.06 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 95.06 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 95.03 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 95.02 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 94.96 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 94.95 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 94.94 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 94.85 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 94.85 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 94.84 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 94.82 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 94.72 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 94.71 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 94.67 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 94.67 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 94.65 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 94.65 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 94.65 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 94.6 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 94.59 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 94.59 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 94.53 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 94.53 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 94.51 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 94.51 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 94.5 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 94.47 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 94.42 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 94.41 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 94.39 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 94.37 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 94.35 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 94.34 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 94.33 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 94.3 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 94.3 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 94.3 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 94.27 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 94.23 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 94.23 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 94.22 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 94.21 | |
| 1vm6_A | 228 | DHPR, dihydrodipicolinate reductase; TM1520, struc | 94.21 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 94.21 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 94.14 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 94.09 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 94.08 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 94.07 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 94.07 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 94.04 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 94.04 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 94.0 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 94.0 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 93.94 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 93.93 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 93.92 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 93.88 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 93.86 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 93.84 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 93.81 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 93.81 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 93.79 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 93.77 | |
| 2y1e_A | 398 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; o | 93.76 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 93.74 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 93.73 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 93.67 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 93.64 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 93.62 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 93.61 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 93.61 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 93.6 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 93.58 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 93.57 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 93.56 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 93.52 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 93.51 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 93.5 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 93.44 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 93.36 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 93.35 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 93.32 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 93.32 | |
| 1q0q_A | 406 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; o | 93.31 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 93.26 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 93.23 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 93.21 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 93.21 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 93.19 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 93.18 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 93.14 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 93.14 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 93.05 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 93.05 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 93.02 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 92.98 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 92.96 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 92.84 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 92.76 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 92.73 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 92.71 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 92.7 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 92.64 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 92.6 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 92.59 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 92.57 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 92.56 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 92.55 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 92.55 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 92.54 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 92.52 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 92.51 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 92.49 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 92.48 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 92.44 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 92.38 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 92.3 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 92.25 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 92.23 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 92.16 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 92.15 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 92.14 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 92.06 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 92.05 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 92.03 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 92.01 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 91.96 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 91.85 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 91.8 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 91.79 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 91.77 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 91.74 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 91.7 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 91.7 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 91.69 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 91.67 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 91.67 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 90.94 | |
| 3au8_A | 488 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; N | 91.62 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 91.58 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 91.51 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 91.5 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 91.37 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 91.35 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 91.32 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 91.31 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 91.18 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 91.15 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 91.11 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 90.87 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 90.7 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 90.68 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 90.67 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 90.63 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 90.6 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 90.6 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 90.4 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 90.39 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 90.34 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 89.88 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 89.82 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 89.79 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 89.78 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 89.65 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 89.63 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 89.31 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 89.12 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 89.07 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 89.06 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 88.95 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 88.84 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 88.79 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 88.72 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 88.59 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 88.43 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 88.23 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 88.22 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 88.18 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 88.03 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 87.96 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 87.9 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 87.78 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 87.68 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 87.66 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 87.65 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 87.4 | |
| 3mwd_B | 334 | ATP-citrate synthase; ATP-grAsp, phosphohistidine, | 87.37 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 87.22 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 87.08 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 86.97 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 86.9 | |
| 2csu_A | 457 | 457AA long hypothetical protein; structural genomi | 86.84 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 86.82 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 86.8 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 86.71 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 86.4 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 86.33 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 86.02 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 85.73 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 85.5 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 85.41 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 85.35 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 85.1 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 85.04 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 84.79 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 84.65 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 84.51 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 84.5 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 84.38 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 84.31 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 84.19 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 84.11 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 83.83 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 83.28 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 82.85 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 82.79 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 82.37 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 81.86 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 81.85 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 81.68 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 81.66 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 81.63 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 81.24 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 80.55 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 80.34 |
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-95 Score=725.47 Aligned_cols=340 Identities=44% Similarity=0.786 Sum_probs=320.4
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccC-CCCCEEEEcCCC
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADF-SNVDAVFCCLPH 139 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~-~~vDvVF~al~~ 139 (406)
+.|+||||+|||||+|++|+|+|++||++|++.++|++++|+++.++||+|. .++. +++.+++++ .++|+||+|+|+
T Consensus 11 ~~~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~-~~l~-~~~~~~~~~~~~~Dvvf~alp~ 88 (351)
T 1vkn_A 11 HHMIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTL-ENSI-LSEFDPEKVSKNCDVLFTALPA 88 (351)
T ss_dssp -CCEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGC-CCCB-CBCCCHHHHHHHCSEEEECCST
T ss_pred cceeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhc-cCce-EEeCCHHHhhcCCCEEEECCCc
Confidence 4589999999999999999999999999999999999999999999999986 4543 444555555 689999999999
Q ss_pred cchHHHHhhCCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCcEEecCCChHHHHHHHH
Q 015441 140 GTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPL 219 (406)
Q Consensus 140 ~~s~~~~~~l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~iVanPgC~tta~~l~L 219 (406)
++|+++++.+ +|++|||+|+||||++.+.|++||+.+|.+|+++++ +||+||+||++|+++++|||||||||+++|+|
T Consensus 89 ~~s~~~~~~~-~g~~VIDlSsdfRl~~~~~y~~~y~~~h~~p~~~~~-~yglPE~n~e~i~~a~iIANPgC~~t~~~laL 166 (351)
T 1vkn_A 89 GASYDLVREL-KGVKIIDLGADFRFDDPGVYREWYGKELSGYENIKR-VYGLPELHREEIKNAQVVGNPGCYPTSVILAL 166 (351)
T ss_dssp THHHHHHTTC-CSCEEEESSSTTTCSSHHHHHHHHCCCCTTGGGCCE-EECCHHHHHHHHTTCSEEECCCHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCEEEECChhhhCCchhhhhhhcCCCCCchhhcCC-ceECCccCHHHhccCCEEeCCChHHHHHHHHH
Confidence 9999999999 999999999999999889999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhcCcccccCCcccchhhhhhhhccccCCCceEEEEEEEeeec
Q 015441 220 VPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMI 299 (406)
Q Consensus 220 ~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni~py~~~~h~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~ 299 (406)
+||+++++++.++|+|+|+||+||||+++++++|+.++.+|++||+++.|||+|||++++++++++.++|+||||||||+
T Consensus 167 ~PL~~~~~i~~~~iiv~t~sgvSGAG~~~~~~~~~~e~~~n~~~y~~~~h~h~pEi~~el~~i~~~~~~v~ftp~rvPv~ 246 (351)
T 1vkn_A 167 APALKHNLVDPETILVDAKSGVSGAGRKEKVDYLFSEVNESLRPYNVAKHRHVPEMEQELGKISGKKVNVVFTPHLVPMT 246 (351)
T ss_dssp HHHHHTTCSCCSEEEEEEEEEGGGGCSCCSGGGBHHHHTTCCEECSCSCCTHHHHHHHHHHHHHTSCCEEEEEEEEESSS
T ss_pred HHHHHcCCCCCCEEEEEEEeeccccCcccccccchhHHhcccccCCccccccHHHHHHHHHHhhCCCCCEEEEEEEeccc
Confidence 99999987766699999999999999999999899999999999999999999999999999988888999999999999
Q ss_pred ceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCccccccccCCCcEEEEEEEeCcCCeEEEEEEehhhhHhH
Q 015441 300 RGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIPGRAIIISVIDNLVKGA 379 (406)
Q Consensus 300 rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~~~v~g~n~~~v~~~~~~~~~~~~~~~v~DNL~KGA 379 (406)
|||++|+|++++ ++.+|++++|+++|+++|||+|.+++.+|+|++++|+|+|+||+..+..++++++|+++|||+|||
T Consensus 247 rG~~~tv~v~l~--~~~eei~~~l~~~Y~~~pfV~v~~~~~~P~~~~v~gtn~~~Ig~~~d~~~~~l~~~s~~DNL~KGA 324 (351)
T 1vkn_A 247 RGILSTIYVKTD--KSLEEIHEAYLEFYKNEPFVHVLPMGIYPSTKWCYGSNHVFIGMQMEERTNTLILMSAIDNLVKGA 324 (351)
T ss_dssp SCEEEEEEEECS--SCHHHHHHHHHHHHTTCTTEEECCTTCCCCGGGGTTSSCEEEEEEEETTTTEEEEEEEECTTTTTT
T ss_pred cEEEEEEEEEEc--CCHHHHHHHHHHhhCCCCCEEEeCCCCCcChHHhcCCceEEEEEEEcCCCCEEEEEEEcccHHHhH
Confidence 999999999998 899999999999999999999999888999999999999999976666678999999999999999
Q ss_pred HHHHHHHHHHHhCCCcccCCCCCCCCC
Q 015441 380 SGQALQNLNIMLGFPENTGLLYQPLFP 406 (406)
Q Consensus 380 AgqAVQ~~nl~~g~~e~~gl~~~~~~p 406 (406)
|||||||||+|+|||||+||.+.|+||
T Consensus 325 AgqAVQn~nlm~G~~E~~GL~~~~~~p 351 (351)
T 1vkn_A 325 SGQAVQNMNIMFGLDETKGLEFTPIYP 351 (351)
T ss_dssp HHHHHHHHHHHTTCCTTTTCCCCCCCC
T ss_pred HHHHHHHHHHHhCCCcccCCCcCCCCC
Confidence 999999999999999999999999998
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-90 Score=686.33 Aligned_cols=326 Identities=39% Similarity=0.672 Sum_probs=305.9
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccC---cCCccccccccCcccc-CCCccccc-CcccC-CCCCEEEEc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR---KAGQSIGSVFPHLISQ-DLPTMVAV-KDADF-SNVDAVFCC 136 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~---~~G~~i~~v~p~l~~~-~~~~~~~~-~~~~~-~~vDvVF~a 136 (406)
|+||+|+|||||+|++|+++|.+||+++++.+.+++ ++|+++.++||+|.+. ++. ++++ +.+++ .++|+||+|
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~-v~~~~~~~~~~~~~Dvvf~a 82 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELP-LQPMSDISEFSPGVDVVFLA 82 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCB-EEEESSGGGTCTTCSEEEEC
T ss_pred ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCcccee-EeccCCHHHHhcCCCEEEEC
Confidence 589999999999999999999999999999999888 9999999999998764 443 4444 55567 799999999
Q ss_pred CCCcchHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCcEEecCCChHHHH
Q 015441 137 LPHGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSI 215 (406)
Q Consensus 137 l~~~~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~iVanPgC~tta~ 215 (406)
+|++.++++++.+ ++|++|||+|++|||++.+.|++||+.+|..|+++.+++||+||+|+++|+++++|||||||||++
T Consensus 83 ~p~~~s~~~~~~~~~~g~~vIDlSa~fR~~d~~v~~~wy~~~~~~p~l~~~~vyglPEvn~~~i~~~~iIanPgC~tt~~ 162 (337)
T 3dr3_A 83 TAHEVSHDLAPQFLEAGCVVFDLSGAFRVNDATFYEKYYGFTHQYPELLEQAAYGLAEWCGNKLKEANLIAVPGCYPTAA 162 (337)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEECSSTTSSSCHHHHHHHTSSCCSCHHHHHHCEECCTTTCCHHHHTCSEEECCCHHHHHH
T ss_pred CChHHHHHHHHHHHHCCCEEEEcCCccccCCcccchhhccccccChhhhcceEEEccccCHHHhCCCCEEecCChHHHHH
Confidence 9999999999875 889999999999999988999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCcceE-EEEEeeccCccCcchhhcccHHHHhcCcccccCCcccchhhhhhhhccccCCCceEEEEEE
Q 015441 216 QLPLVPLIQANLIQYRNI-IIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPH 294 (406)
Q Consensus 216 ~l~L~PL~~~~l~~i~~i-~v~t~~gvSGaG~~~~~~~~~~e~~~ni~py~~~~h~h~pEi~~~l~~i~~~~~~v~~t~~ 294 (406)
+++|+||+++++++++++ +|+|+||+||+||++++..|+.++ |++||+++.|||+|||++.+++ +|+||||
T Consensus 163 ~l~L~PL~~~g~~~~~~i~~v~t~~g~SGaG~~~~~~~~~~~~--n~~py~~~~h~h~Pei~~~l~~------~v~ft~~ 234 (337)
T 3dr3_A 163 QLALKPLIDADLLDLNQWPVINATSGVSGAGRKAAISNSFCEV--SLQPYGVFTHRHQPEIATHLGA------DVIFTPH 234 (337)
T ss_dssp HHHHHHHHHTTCBCTTSCCEEEEEECGGGGCSCCCSTTSGGGC--SEEECSTTTCTHHHHHHHHHTS------CCEEEEE
T ss_pred HHHHHHHHHcCccCCCceEEEEEeeccccCCcccccccccccc--ceEccCcccceechhHHhhhcC------CEEEEEE
Confidence 999999999888999999 999999999999999997788776 9999999999999999998754 6999999
Q ss_pred EeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCccccccccCCCcEEEEEEEeCcCCeEEEEEEehh
Q 015441 295 LMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIPGRAIIISVIDN 374 (406)
Q Consensus 295 rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~~~v~g~n~~~v~~~~~~~~~~~~~~~v~DN 374 (406)
||||+|||++++|++++++++.+|++++|+++|+++|||++.+++. |+|+++.|+|+|+||+.++ ++++++|+++||
T Consensus 235 rvPv~rG~~~ti~~~l~~~~t~eev~~~l~~~Y~~~p~V~v~~~~~-P~~~~v~gtn~~~ig~~~~--~~~l~~~~~~DN 311 (337)
T 3dr3_A 235 LGNFPRGILETITCRLKSGVTQAQVAQALQQAYAHKPLVRLYDKGV-PALKNVVGLPFCDIGFAVQ--GEHLIIVATEDN 311 (337)
T ss_dssp EESSSSCEEEEEEEEBCTTCCHHHHHHHHHHHHTTCTTEEECSSSC-CCGGGTTTSSCEEEEEEEE--TTEEEEEEEECT
T ss_pred EecccccEEEEEEEEECCCCCHHHHHHHHHHHhCCCCCEEECCCCC-CCHHHhCCCCcEEEEEEEe--CCEEEEEEEech
Confidence 9999999999999999999999999999999999999999998776 9999999999999999988 789999999999
Q ss_pred hhHhHHHHHHHHHHHHhCCCcccCCC
Q 015441 375 LVKGASGQALQNLNIMLGFPENTGLL 400 (406)
Q Consensus 375 L~KGAAgqAVQ~~nl~~g~~e~~gl~ 400 (406)
|+||||||||||||+|+|||||+||.
T Consensus 312 L~KGAAgqAVQ~~nlm~g~~e~~gl~ 337 (337)
T 3dr3_A 312 LLKGAAAQAVQCANIRFGYAETQSLI 337 (337)
T ss_dssp TTTTTHHHHHHHHHHHHTCCTTTTTC
T ss_pred HHHHHHHHHHHHHHHHhCCchhhcCC
Confidence 99999999999999999999999983
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-88 Score=678.05 Aligned_cols=341 Identities=85% Similarity=1.288 Sum_probs=316.9
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCcccc---CCCcccccCcccCCCCCEEEEcCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQ---DLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~---~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
++||+|+||||++|++++|+|.+||+++++++++++++|++++++||+|.+. ++. +.+ ++.|.++|+||+|+|+
T Consensus 16 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~-~~~--~~~~~~vDvVf~atp~ 92 (359)
T 1xyg_A 16 DIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLV-SVK--DADFSTVDAVFCCLPH 92 (359)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCB-CGG--GCCGGGCSEEEECCCT
T ss_pred CcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccce-ecc--hhHhcCCCEEEEcCCc
Confidence 3799999999999999999999999999999999999999999999988752 332 222 3356789999999999
Q ss_pred cchHHHHhhCCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCcEEecCCChHHHHHHHH
Q 015441 140 GTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPL 219 (406)
Q Consensus 140 ~~s~~~~~~l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~iVanPgC~tta~~l~L 219 (406)
+.++++++.+++|++|||+|++||+++.+.|++||+.+|..||++++++||+||+|+++++++++|||||||||+++++|
T Consensus 93 ~~s~~~a~~~~aG~~VId~sa~~R~~~~~~y~~~y~~~~~~~~~l~~~vygvpE~n~~~i~~~~iIanpgC~tt~~~~~l 172 (359)
T 1xyg_A 93 GTTQEIIKELPTALKIVDLSADFRLRNIAEYEEWYGQPHKAVELQKEVVYGLTEILREDIKKARLVANPGCYPTTIQLPL 172 (359)
T ss_dssp TTHHHHHHTSCTTCEEEECSSTTTCSCHHHHHHHHSSCCSCHHHHTTCEECCHHHHHHHHHTCSEEECCCHHHHHHHHHH
T ss_pred hhHHHHHHHHhCCCEEEECCccccCCchhhhhhhhcCCcCChhhcCCceEECCccCHHHhccCCEEECCCcHHHHHHHHH
Confidence 99999998666699999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhcCcccccCCcccchhhhhhhhccccCCCceEEEEEEEeeec
Q 015441 220 VPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMI 299 (406)
Q Consensus 220 ~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni~py~~~~h~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~ 299 (406)
+||+++++++.++++|+|+||+||+|+++.+++|+.++.+|++||+++.|+|+|||++.+++++++.++|+|||+|||++
T Consensus 173 ~pL~~~~~i~~~~i~v~t~~~~SGaG~~~~~~~~~~~~~~ni~py~~~~h~h~pEi~~~l~~~~~~~~~v~~t~~rvP~~ 252 (359)
T 1xyg_A 173 VPLLKANLIKHENIIIDAKSGVSGAGRGAKEANLYSEIAEGISSYGVTRHRHVPEIEQGLSDVAQSKVTVSFTPHLMPMI 252 (359)
T ss_dssp HHHHHTTCBCSSSCEEEEEEEGGGGCSCCCGGGBHHHHTTCCEECSCSCCTHHHHHHHHHHHHHTSCCCCEEECEEESSS
T ss_pred HHHHHcCCCCCCeEEEEEEEEccccCcccchhhhhHHHhcCeecccccccccHHHHHHHHHHhcCCCCCEEEEEEEeccc
Confidence 99999965544499999999999999999998889999999999999999999999999998888788999999999999
Q ss_pred ceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCccccccccCCCcEEEEEEEeCcCCeEEEEEEehhhhHhH
Q 015441 300 RGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIPGRAIIISVIDNLVKGA 379 (406)
Q Consensus 300 rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~~~v~g~n~~~v~~~~~~~~~~~~~~~v~DNL~KGA 379 (406)
|||++++|++++++++.|||+++|+++|+++|||++.+++.+|+|++++|+|+|+||+..+..++++++|+++|||+|||
T Consensus 253 ~G~~~~i~~~l~~~~t~eei~~~~~~~y~~~~~V~v~~~~~~p~~~~v~g~n~~~ig~~~d~~~~~l~~~~~~DNl~kGA 332 (359)
T 1xyg_A 253 RGMQSTIYVEMAPGVRTEDLHQQLKTSYEDEEFVKVLDEGVVPRTHNVRGSNYCHMSVFPDRIPGRAIIISVIDNLVKGA 332 (359)
T ss_dssp SCEEEEEEEEBCTTCCHHHHHHHHHHHHTTCSSEEECCTTCCCBGGGTTTSSCEEEEEEECSSTTEEEEEEEECTTTTTT
T ss_pred ceEEEEEEEEeCCCCCHHHHHHHHHHhhCCCCCEEEcCCCCCCCHHHhcCCCeEEEEEEEeCCCCEEEEEEEehhhhHhH
Confidence 99999999999999999999999999999999999999888999999999999999965565668999999999999999
Q ss_pred HHHHHHHHHHHhCCCcccCCCCCCCCC
Q 015441 380 SGQALQNLNIMLGFPENTGLLYQPLFP 406 (406)
Q Consensus 380 AgqAVQ~~nl~~g~~e~~gl~~~~~~p 406 (406)
|||||||||+|+||+||+||.+.|+||
T Consensus 333 Ag~Avq~~nl~~g~~e~~gl~~~~~~p 359 (359)
T 1xyg_A 333 SGQALQNLNIMLGYPETTGLLHQPLFP 359 (359)
T ss_dssp HHHHHHHHHHHTTSCTTTTCCCCCCCC
T ss_pred HHHHHHHHHHHhCCCcccCCCcCCCCC
Confidence 999999999999999999999999998
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-87 Score=670.19 Aligned_cols=334 Identities=38% Similarity=0.643 Sum_probs=311.1
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCC-----CceEEEEeccCcCCccccccccCccc-cCCCcccccCcccCCCCCEEEEc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHP-----YFGIKLMTADRKAGQSIGSVFPHLIS-QDLPTMVAVKDADFSNVDAVFCC 136 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp-----~~elv~l~s~~~~G~~i~~v~p~l~~-~~~~~~~~~~~~~~~~vDvVF~a 136 (406)
|+||+|+||||++|++|+|+|.+|| ++|++++++++++|+++.++||+|.+ .++. +.+.++++|.++|+||+|
T Consensus 9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~-~~~~~~~~~~~~DvVf~a 87 (352)
T 2nqt_A 9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRV-VEPTEAAVLGGHDAVFLA 87 (352)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCB-CEECCHHHHTTCSEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceee-eccCCHHHhcCCCEEEEC
Confidence 5799999999999999999999999 99999999999999999999999875 3443 344444557799999999
Q ss_pred CCCcchHHHHhhCCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhcccccc--chhhccCCcEEecCCChHHH
Q 015441 137 LPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEI--SREDIKNARLVANPGCYPTS 214 (406)
Q Consensus 137 l~~~~s~~~~~~l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~--~~~~i~~~~iVanPgC~tta 214 (406)
+|++.++++++.+++|++|||+|++||+++++.|++||+.+|..| ++||+||+ |+++|+++++|||||||||+
T Consensus 88 lg~~~s~~~~~~~~~G~~vIDlSa~~R~~~~~~~~~~y~~~h~~~-----~vyglPEv~~n~~~i~~~~iIanPgC~tt~ 162 (352)
T 2nqt_A 88 LPHGHSAVLAQQLSPETLIIDCGADFRLTDAAVWERFYGSSHAGS-----WPYGLPELPGARDQLRGTRRIAVPGCYPTA 162 (352)
T ss_dssp CTTSCCHHHHHHSCTTSEEEECSSTTTCSCHHHHHHHHSSCCCCC-----CCBSCTTSTTHHHHHTTCSEEECCCHHHHH
T ss_pred CCCcchHHHHHHHhCCCEEEEECCCccCCcchhhhhhccccCCCC-----eeEEecccccCHHHHhcCCEEEcCCHHHHH
Confidence 999999999987766999999999999998899999999999988 78999999 99999999999999999999
Q ss_pred HHHHHHHHHHccCCCcc-eEEEEEeeccCccCcchhhcccHHHHhcCcccccCCc-ccchhhhhhhhccccCCCceEEEE
Q 015441 215 IQLPLVPLIQANLIQYR-NIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTR-HRHVPEIEQGLTGFASSKVTVSFT 292 (406)
Q Consensus 215 ~~l~L~PL~~~~l~~i~-~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni~py~~~~-h~h~pEi~~~l~~i~~~~~~v~~t 292 (406)
++++|+||+++++ ++ +++|+|+||+||+|+++++..|+.++.+++.+|++.. |||+|||+++++++++..++|+||
T Consensus 163 ~~lal~PL~~~~~--i~~~i~v~t~~g~SGaG~~~~~~~~~~~~~~~~~ay~~~~~h~h~pEi~~e~~ki~~~~~~v~ft 240 (352)
T 2nqt_A 163 ALLALFPALAADL--IEPAVTVVAVSGTSGAGRAATTDLLGAEVIGSARAYNIAGVHRHTPEIAQGLRAVTDRDVSVSFT 240 (352)
T ss_dssp HHHHHHHHHHTTC--SCSEEEEEEEECGGGGCSSCCGGGSHHHHTTCCEECSTTTTSTTHHHHHHHHHTTCSSCCEEEEE
T ss_pred HHHHHHHHHHcCC--CcceEEEEEEeccccCCccccccccHHHHhhhcccccCCCcceecHHHHHHHHHHhCCCCCEEEE
Confidence 9999999999864 55 6999999999999999999889999999999999988 999999999999999888999999
Q ss_pred EEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCccccccccCCCcEEEEEEEeCcCCeEEEEEEe
Q 015441 293 PHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIPGRAIIISVI 372 (406)
Q Consensus 293 ~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~~~v~g~n~~~v~~~~~~~~~~~~~~~v~ 372 (406)
||||||+|||++++|++++++ .+|++++|+++|+++|||+|.+++.+|+|+++.|+|+|+||+..+..++++++|+++
T Consensus 241 ~~rvP~~rG~~~ti~~~l~~~--~~ei~~~~~~~y~~~~~V~v~~~~~~p~~~~v~g~n~~~ig~~~d~~~~~l~~~~~~ 318 (352)
T 2nqt_A 241 PVLIPASRGILATCTARTRSP--LSQLRAAYEKAYHAEPFIYLMPEGQLPRTGAVIGSNAAHIAVAVDEDAQTFVAIAAI 318 (352)
T ss_dssp EEECSCSSCEEEEEEEECCSC--HHHHHHHHHHHHTTCTTEEECCTTCCCCGGGTTTSSCEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEccccEEEEEEEEEECCC--HHHHHHHHHHhhCCCCCEEEeCCCCCcChHHhcCCcEEEEEEEEeCCCCEEEEEEEE
Confidence 999999999999999999877 899999999999999999999988899999999999999997667677899999999
Q ss_pred hhhhHhHHHHHHHHHHHHhCCCcccCCCCCCCCC
Q 015441 373 DNLVKGASGQALQNLNIMLGFPENTGLLYQPLFP 406 (406)
Q Consensus 373 DNL~KGAAgqAVQ~~nl~~g~~e~~gl~~~~~~p 406 (406)
|||+||||||||||||+|+|||||+||.+.|+||
T Consensus 319 DNL~KGAAg~AVQ~~nl~~g~~e~~gl~~~~~~p 352 (352)
T 2nqt_A 319 DNLVKGTAGAAVQSMNLALGWPETDGLSVVGVAP 352 (352)
T ss_dssp CTTTTTTHHHHHHHHHHHHTCCTTTTCCCCCCCC
T ss_pred cchhHhHHHHHHHHHHHHhCCCcccCCCcCCCCC
Confidence 9999999999999999999999999999999998
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-86 Score=661.76 Aligned_cols=336 Identities=34% Similarity=0.556 Sum_probs=309.8
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccc-cCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLIS-QDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~-~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
|+||+|+||||++|++++|+|.+||++|++++++++++|+++.++|++|.+ .++. +.+.+ +|.++|+||+|+|++.
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~-~~~~~--~~~~vDvV~~a~g~~~ 80 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLK-FVPPE--KLEPADILVLALPHGV 80 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCB-CBCGG--GCCCCSEEEECCCTTH
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCccccc-ccchh--HhcCCCEEEEcCCcHH
Confidence 589999999999999999999999999999999988999999999998866 3433 33332 4678999999999999
Q ss_pred hHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCcEEecCCChHHHHHHHHH
Q 015441 142 TQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLV 220 (406)
Q Consensus 142 s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~iVanPgC~tta~~l~L~ 220 (406)
++++++++ ++|++|||+|++||+++.+.|++||+ +|..||++++++||+||+|+++++++++|||||||||+++++|+
T Consensus 81 s~~~a~~~~~aG~~VId~Sa~~r~~~~~~y~~~y~-~h~~~e~l~~~vygvpE~n~~~i~~~~iIanp~C~tt~~~~~l~ 159 (345)
T 2ozp_A 81 FAREFDRYSALAPVLVDLSADFRLKDPELYRRYYG-EHPRPDLLGRFVYAVPELYREALKGADWIAGAGCNATATLLGLY 159 (345)
T ss_dssp HHHTHHHHHTTCSEEEECSSTTSCSCHHHHHHHHC-CCSSGGGTTSSEECCHHHHHHHHHTCSEEECCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEcCccccCCChHHHHhhhc-cccchhhhccCcEeccccCHHHhhcCCEEeCCCcHHHHHHHHHH
Confidence 99999865 88999999999999998899999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhcCcccccCCcccchhhhhhhhccccCCCceEEEEEEEeeecc
Q 015441 221 PLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMIR 300 (406)
Q Consensus 221 PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni~py~~~~h~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~r 300 (406)
||+++++++.++++|+|+||+||+|+++++++|+.++.+|++||+++.|+|+|||++.++ +.+ +|+|||||||++|
T Consensus 160 pL~~~~~i~~~~i~v~t~~~~SGaG~~~~~~~~~~~~~~n~~py~~~~h~~~pei~~~l~---~~~-~v~~~~~rvP~~~ 235 (345)
T 2ozp_A 160 PLLKAGVLKPTPIFVTLLISTSAGGAEASPASHHPERAGSIRVYKPTGHRHTAEVVENLP---GRP-EVHLTAIATDRVR 235 (345)
T ss_dssp HHHHTTCBCSSCEEEEEEECSGGGCSSCCGGGCHHHHTTCCEEEECSCCTHHHHHHHTSS---SCC-CEEEEEEECSCSS
T ss_pred HHHHhcCCCCCeEEEEEEEEccccCccccccccchhhccccccCCCCCccChHhHHHHhC---CCC-CeEEEEEEecccc
Confidence 999996555459999999999999999999888899999999999999999999998876 233 7999999999999
Q ss_pred eeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEec----CCCCccccccccCCCcEEEEEEEeCcCCeEEEEEEehhhh
Q 015441 301 GMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLL----EKGVVPRTHNVRGSNYCLMNVFPDRIPGRAIIISVIDNLV 376 (406)
Q Consensus 301 G~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~----~~~~~P~~~~v~g~n~~~v~~~~~~~~~~~~~~~v~DNL~ 376 (406)
||++++|++++++++.|||+++|+++|+++|||+|. +++.+|+|++++|+|+|+||+..+..++++++|+++|||+
T Consensus 236 g~~~~i~~~l~~~~t~eei~~~~~~~y~~~~~v~v~~~~~~~~~~p~~~~~~g~~~~~ig~~~d~~~~~~~~~~~~DNl~ 315 (345)
T 2ozp_A 236 GILMTAQCFVQDGWSERDVWQAYREAYAGEPFIRLVKQKKGVHRYPDPRFVQGTNYADIGFELEEDTGRLVVMTAIDNLV 315 (345)
T ss_dssp CEEEEEEEEBCTTCCHHHHHHHHHHHHTTCTTEEECCCSSSSCCSCCHHHHTTSCCEEEEEEEETTTTEEEEEEEECTTT
T ss_pred EEEEEEEEEeCCCCCHHHHHHHHHHHhCCCCCEEEEeCCCCcCCCCCHHHhcCCceEEEEEEEeCCCCEEEEEEEeccHH
Confidence 999999999999999999999999999999999998 4556999999999999999965666678999999999999
Q ss_pred HhHHHHHHHHHHHHhCCCcccCCCCCCCCC
Q 015441 377 KGASGQALQNLNIMLGFPENTGLLYQPLFP 406 (406)
Q Consensus 377 KGAAgqAVQ~~nl~~g~~e~~gl~~~~~~p 406 (406)
||||||||||||+|+|||||+||.+.|+||
T Consensus 316 kGAAg~Avq~~nl~~g~~e~~gl~~~~~~p 345 (345)
T 2ozp_A 316 KGTAGHALQALNVRMGWPETLGLDFPGLHP 345 (345)
T ss_dssp TTTHHHHHHHHHHHTTCCTTTTCCCCCCCC
T ss_pred HHHHHHHHHHHHHHhCcchhcCCCcCCCCC
Confidence 999999999999999999999999999998
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-74 Score=581.14 Aligned_cols=322 Identities=21% Similarity=0.310 Sum_probs=274.2
Q ss_pred cccccCC-ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe-ccCcCCccccccccCccc-------cCCCcccccCcc-
Q 015441 56 KTQKSEK-QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT-ADRKAGQSIGSVFPHLIS-------QDLPTMVAVKDA- 125 (406)
Q Consensus 56 ~~~~~~~-~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~-s~~~~G~~i~~v~p~l~~-------~~~~~~~~~~~~- 125 (406)
..|.++| |+||||+|||||+|++|+|+|++||++|+..+. |++++|+++.+++|++.+ .++ .+++.+++
T Consensus 11 ~~~~~~M~~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~-~v~~~~~~~ 89 (381)
T 3hsk_A 11 VPRGSHMSVKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDI-VVQECKPEG 89 (381)
T ss_dssp -------CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTC-BCEESSSCT
T ss_pred ccccccCCccEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHHhcccccccccccccccc-eEEeCchhh
Confidence 3444444 479999999999999999999999999998875 788999999999988753 233 24445555
Q ss_pred cCCCCCEEEEcCCCcchHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhh------
Q 015441 126 DFSNVDAVFCCLPHGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISRED------ 198 (406)
Q Consensus 126 ~~~~vDvVF~al~~~~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~------ 198 (406)
++.++|+||+|+|+++++++++.+ ++|++|||+|++|||++ ++|+.+|++|.+ .||+||++|++
T Consensus 90 ~~~~~Dvvf~alp~~~s~~~~~~~~~~G~~VIDlSa~fR~~~--------~vplvv~~vn~~-~~~l~E~~r~~~~~~~~ 160 (381)
T 3hsk_A 90 NFLECDVVFSGLDADVAGDIEKSFVEAGLAVVSNAKNYRREK--------DVPLVVPIVNPE-HIDVVENKVKQAVSKGG 160 (381)
T ss_dssp TGGGCSEEEECCCHHHHHHHHHHHHHTTCEEEECCSTTTTCT--------TSCEECTTTCGG-GGHHHHHHHHHHHHTTC
T ss_pred hcccCCEEEECCChhHHHHHHHHHHhCCCEEEEcCCcccCCC--------CCcEEecccCHH-HcCCHhhhhhhhccccc
Confidence 678999999999999999999876 78999999999999986 467778888876 47999999987
Q ss_pred ccCCcEEecCCChHHHHHHHHHHHHHc-cCCCcceEEEEEeeccCccCcc-hhhcccHHHHhcCcccccCCc-ccchhhh
Q 015441 199 IKNARLVANPGCYPTSIQLPLVPLIQA-NLIQYRNIIIDAKSGVSGAGRG-AKEANLYSEIAEGIYSYGVTR-HRHVPEI 275 (406)
Q Consensus 199 i~~~~iVanPgC~tta~~l~L~PL~~~-~l~~i~~i~v~t~~gvSGaG~~-~~~~~~~~e~~~ni~py~~~~-h~h~pEi 275 (406)
++++++|||||||||+++++|+||+++ |+ +++++|+|+||+||||++ +.+. .++++|++||+.+. |+|+||+
T Consensus 161 i~~~~iIaNPgC~tt~~~laL~PL~~~~gl--I~~v~v~t~~gvSGAG~~~~~~~---~~~~~N~~Py~~~~e~k~~~Ei 235 (381)
T 3hsk_A 161 KKPGFIICISNCSTAGLVAPLKPLVEKFGP--IDALTTTTLQAISGAGFSPGVSG---MDILDNIVPYISGEEDKLEWET 235 (381)
T ss_dssp CCCCEEEEECCHHHHHHHHHHHHHHHHHCC--EEEEEEEEEBCCCC------CCH---HHHTTCCBCCCTTHHHHHHHHH
T ss_pred ccCCcEEECCCcHHHHHHHHHHHHHHhcCC--ceEEEEEEeeccCCCCccCCcch---hhhhcChhhcccchHHHHHHHH
Confidence 577889999999999999999999997 43 579999999999999994 4443 38999999999887 8999999
Q ss_pred hhhhccccC----------CCceEEEEEEEeeecceeEEEEEEEeCC--CCCHHHHHHHHHHHcCC----------CCcE
Q 015441 276 EQGLTGFAS----------SKVTVSFTPHLMPMIRGMQSTIYVEMAP--GVTIEDLYQQLKISYEH----------EEFV 333 (406)
Q Consensus 276 ~~~l~~i~~----------~~~~v~~t~~rVPv~rG~~~ti~v~l~~--~~s~eev~~~l~~~y~~----------~~fV 333 (406)
++.|..+.+ +.++|+|||+||||+|||++++|+++++ +++.||++++|+++|++ ++||
T Consensus 236 ~kiL~~l~~~~~~~~~~~~~~~~v~ft~~rVPv~rG~~~tv~v~l~~~~~~t~eei~~~l~~~y~~~~~~~l~~~p~~~V 315 (381)
T 3hsk_A 236 KKILGGVNAEGTEFVPIPESEMKVSAQCNRVPVIDGHTECISLRFANRPAPSVEDVKQCLREYECAASKLGCHSAPKQTI 315 (381)
T ss_dssp HHHTCEECTTSSSEECCCTTTCEEEEECCBCSCSSCCEEEEEEEESSSSCCCHHHHHHHHHHCBCHHHHTTCTTCCSBSE
T ss_pred HHHhhhcccccccccccccCCCceEEEEEEeceeccEEEEEEEEeCCCCCCCHHHHHHHHHHhhccccccccccCCCCcE
Confidence 998876543 4579999999999999999999999998 89999999999999987 8999
Q ss_pred EecCCCCccccc---cccCCCcEEEEEEEeCcCCeEEEEEEehhhhHhHHHHHHHHHHHHhC
Q 015441 334 KLLEKGVVPRTH---NVRGSNYCLMNVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMLG 392 (406)
Q Consensus 334 ~v~~~~~~P~~~---~v~g~n~~~v~~~~~~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~g 392 (406)
+|.+++++|+|+ ++.|++.|+|||+|.+....+.+|+++|||+||||||||||||+|+.
T Consensus 316 ~v~~~~~~P~p~~~~~~~~~~~v~Vgrir~d~~~~~~~~~v~DNl~kGAAg~AVq~aell~~ 377 (381)
T 3hsk_A 316 HVLDQPDRPQPRLDRDRDSGYGVSVGRIREDSLLDFKMVVLSHNTIIGAAGAGILIAEILKA 377 (381)
T ss_dssp EEECSTTCCCHHHHTTTTTTSSEEEEEEEECSSSSEEEEEEECHHHHSHHHHHHHHHHHHHT
T ss_pred EEeCCCCCCceeecccccCCceEEEEEEEeCCCCCeEEEEEeCcHHHhHHHHHHHHHHHHHH
Confidence 999988899999 67899999999998765557999999999999999999999999974
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-74 Score=576.29 Aligned_cols=308 Identities=20% Similarity=0.352 Sum_probs=269.7
Q ss_pred cCCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccc-------cCCCcccccCcccCCCCCE
Q 015441 60 SEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLIS-------QDLPTMVAVKDADFSNVDA 132 (406)
Q Consensus 60 ~~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~-------~~~~~~~~~~~~~~~~vDv 132 (406)
+.+++||||+|||||+|++|+|+|++||++|++.++|++++|+++.+++||... .++. +++.+++++.++|+
T Consensus 4 M~~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~-v~~~~~~~~~~vDv 82 (359)
T 4dpl_A 4 MRRTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADME-IKPTDPKLMDDVDI 82 (359)
T ss_dssp --CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCB-CEECCGGGCTTCCE
T ss_pred CCCCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccce-EEeCCHHHhcCCCE
Confidence 345689999999999999999999999999999999999999999998886321 2332 34455566789999
Q ss_pred EEEcCCCcchHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhcc---C-------
Q 015441 133 VFCCLPHGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIK---N------- 201 (406)
Q Consensus 133 VF~al~~~~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~---~------- 201 (406)
||+|+|++.++++++.+ ++|++|||+|++||+++ ++| ||+||+|++++. +
T Consensus 83 vf~a~p~~~s~~~a~~~~~~G~~vIDlSa~~R~~~--------~~p-----------~~vpEvN~~~i~~i~~~~~~~~~ 143 (359)
T 4dpl_A 83 IFSPLPQGAAGPVEEQFAKEGFPVISNSPDHRFDP--------DVP-----------LLVPELNPHTISLIDEQRKRREW 143 (359)
T ss_dssp EEECCCTTTHHHHHHHHHHTTCEEEECSSTTTTCT--------TSC-----------BCCTTTCGGGGGHHHHHHHHHTC
T ss_pred EEECCChHHHHHHHHHHHHCCCEEEEcCCCccCCC--------Ccc-----------EEEcCCCHHHHhhHhhccccccc
Confidence 99999999999999875 88999999999999976 233 677777777753 2
Q ss_pred -CcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhcCcccccCCc-ccchhhhhhhh
Q 015441 202 -ARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTR-HRHVPEIEQGL 279 (406)
Q Consensus 202 -~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni~py~~~~-h~h~pEi~~~l 279 (406)
+++|||||||||+++++|+||+++ +++++++|+|+||+||||+.+. ++.++++|++||..+. |+|+||+++.|
T Consensus 144 ~~~iIanPgC~tt~~~l~L~PL~~~--~gi~~v~v~t~~g~SGaG~~~~---~~~~~~~N~ipy~~~~e~k~~~Ei~kil 218 (359)
T 4dpl_A 144 KGFIVTTPLCTAQGAAIPLGAIFKD--YKMDGAFITTIQSLSGAGYPGI---PSLDVVDNILPLGDGYDAKTIKEIFRIL 218 (359)
T ss_dssp SSEEEECCCHHHHHHHHHHHHHHHH--SCEEEEEEEEEBCGGGGCSSCS---BHHHHTTCCEECCHHHHHHHHHHHHHHH
T ss_pred CccEEECCCcHHHHHHHHHHHHHHh--cCCcEEEEEEEeccccCCCcCc---cChHHhCCeEeecCcHHHHHHHHHHHHH
Confidence 469999999999999999999998 6788999999999999999853 4679999999999887 89999999988
Q ss_pred ccccC-------CCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCC----------CCcEEecCCCCcc
Q 015441 280 TGFAS-------SKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEH----------EEFVKLLEKGVVP 342 (406)
Q Consensus 280 ~~i~~-------~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~----------~~fV~v~~~~~~P 342 (406)
..+.+ +.++|+||||||||+|||++++|++++++++.+|++++|+++|.. ++||+|.+++.+|
T Consensus 219 ~~l~g~~~~~~~~~~~v~~t~~rVPv~rG~~~tv~v~l~~~~t~eei~~~l~~~~~~~~~~~l~~~p~~fV~v~~~~~~P 298 (359)
T 4dpl_A 219 SEVKRNVDEPKLEDVSLAATTHRIATIHGHYEVLYVSFKEETAAEKVKETLENFRGEPQDLKLPTAPSKPIIVMNEDTRP 298 (359)
T ss_dssp TTSCCSSCCSCGGGCEEEEECEECSCSSCEEEEEEEEESSCCCHHHHHHHHHTCCCHHHHTTCTTCCSCSEEEECSTTCC
T ss_pred hhcccccccccccCCceEEEEEEecccccEEEEEEEEECCCCCHHHHHHHHHHhhcccccccccCCCCccEEEcCCCCCC
Confidence 76544 457899999999999999999999999999999999999999988 9999999988899
Q ss_pred ccccccCCC-----cEEEEEEEeCcCCeEEEEEEehhhhHhHHHHHHHHHHHHhC
Q 015441 343 RTHNVRGSN-----YCLMNVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMLG 392 (406)
Q Consensus 343 ~~~~v~g~n-----~~~v~~~~~~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~g 392 (406)
+|+.++|+| .|+|||+++.+.+++.+|+++|||+||||||||||||+|+.
T Consensus 299 ~~~~~~g~~~~~~~~~~Vgr~r~~~~~~l~~~~~~DNL~KGAAg~AVQn~nl~~~ 353 (359)
T 4dpl_A 299 QVYFDRWAGDIPGMSVVVGRLKQVNKRMIRLVSLIHNTVRGAAGGGILAAELLVE 353 (359)
T ss_dssp CHHHHTTCTTTTTCSEEEEEEEEEETTEEEEEEEECTTTTTTHHHHHHHHHHHHH
T ss_pred CHHHhhccCCCcCCeEEEEEEEEcCCCEEEEEEEEhhhhHhHHHHHHHHHHHHHH
Confidence 999998776 49999988545779999999999999999999999999975
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-74 Score=576.29 Aligned_cols=308 Identities=20% Similarity=0.354 Sum_probs=269.4
Q ss_pred cCCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccc-------cCCCcccccCcccCCCCCE
Q 015441 60 SEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLIS-------QDLPTMVAVKDADFSNVDA 132 (406)
Q Consensus 60 ~~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~-------~~~~~~~~~~~~~~~~vDv 132 (406)
+.+++||||+|||||+|++|+|+|++||++|++.++|++++|+++.+++||... .++. +++.+++++.++|+
T Consensus 4 M~~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~-v~~~~~~~~~~vDv 82 (359)
T 4dpk_A 4 MRRTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADME-IKPTDPKLMDDVDI 82 (359)
T ss_dssp --CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCB-CEECCGGGCTTCCE
T ss_pred CCCCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccce-EEeCCHHHhcCCCE
Confidence 345689999999999999999999999999999999999999999998886321 2332 34455566789999
Q ss_pred EEEcCCCcchHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhcc---C-------
Q 015441 133 VFCCLPHGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIK---N------- 201 (406)
Q Consensus 133 VF~al~~~~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~---~------- 201 (406)
||+|+|++.++++++.+ ++|++|||+|++||+++ ++| ||+||+|++++. +
T Consensus 83 vf~a~p~~~s~~~a~~~~~~G~~vIDlSa~~R~~~--------~~p-----------~~vpEvN~~~i~~i~~~~~~~~~ 143 (359)
T 4dpk_A 83 IFSPLPQGAAGPVEEQFAKEGFPVISNSPDHRFDP--------DVP-----------LLVPELNPHTISLIDEQRKRREW 143 (359)
T ss_dssp EEECCCTTTHHHHHHHHHHTTCEEEECSSTTTTCT--------TSC-----------BCCTTTCGGGGGHHHHHHHHHTC
T ss_pred EEECCChHHHHHHHHHHHHCCCEEEEcCCCccCCC--------Ccc-----------EEEcCCCHHHHhhHhhccccccc
Confidence 99999999999999875 88999999999999976 233 677777777753 2
Q ss_pred -CcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhcCcccccCCc-ccchhhhhhhh
Q 015441 202 -ARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTR-HRHVPEIEQGL 279 (406)
Q Consensus 202 -~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni~py~~~~-h~h~pEi~~~l 279 (406)
+++|||||||||+++++|+||+++ +++++++|+|+||+||||+.+.. +.++++|++||..+. |+|+||+++.|
T Consensus 144 ~~~iIanPgC~tt~~~l~L~PL~~~--~gi~~v~v~t~~g~SGaG~~~~~---~~~~~~N~ipy~~~~e~k~~~Ei~kil 218 (359)
T 4dpk_A 144 KGFIVTTPLCTAQGAAIPLGAIFKD--YKMDGAFITTIQSLSGAGYPGIP---SLDVVDNILPLGDGYDAKTIKEIFRIL 218 (359)
T ss_dssp SSEEEECCCHHHHHHHHHHHHHHHH--SCEEEEEEEEEECSGGGCSSCSB---GGGTTTCCEECCHHHHHHHHHHHHHHH
T ss_pred CccEEECCCcHHHHHHHHHHHHHHh--cCCcEEEEEEEeccccCCCcCcc---ChHHhCCeEeecCcHHHHHHHHHHHHH
Confidence 469999999999999999999998 67889999999999999999644 468899999999887 89999999988
Q ss_pred ccccC-------CCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCC----------CCcEEecCCCCcc
Q 015441 280 TGFAS-------SKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEH----------EEFVKLLEKGVVP 342 (406)
Q Consensus 280 ~~i~~-------~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~----------~~fV~v~~~~~~P 342 (406)
..+.+ +.++|+||||||||+|||++++|++++++++.+|++++|+++|.. ++||+|.+++.+|
T Consensus 219 ~~l~g~~~~~~~~~~~v~~t~~rVPv~rG~~~tv~v~l~~~~t~eei~~~l~~~~~~~~~~~l~~~p~~fV~v~~~~~~P 298 (359)
T 4dpk_A 219 SEVKRNVDEPKLEDVSLAATTHRIATIHGHYEVLYVSFKEETAAEKVKETLENFRGEPQDLKLPTAPSKPIIVMNEDTRP 298 (359)
T ss_dssp HTSCCSCCCSCGGGCEEEEEEEECSCSSCEEEEEEEEESSCCCHHHHHHHHHTCCCHHHHTTCTTCCSCSEEECCSTTCC
T ss_pred hhcccccccccccCCceEEEEEEecccccEEEEEEEEECCCCCHHHHHHHHHHhhcccccccccCCCCccEEEcCCCCCC
Confidence 76554 457899999999999999999999999999999999999999988 9999999988899
Q ss_pred ccccccCCC-----cEEEEEEEeCcCCeEEEEEEehhhhHhHHHHHHHHHHHHhC
Q 015441 343 RTHNVRGSN-----YCLMNVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMLG 392 (406)
Q Consensus 343 ~~~~v~g~n-----~~~v~~~~~~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~g 392 (406)
+|+.++|+| .|+|||+++.+.+++.+|+++|||+||||||||||||+|+.
T Consensus 299 ~~~~~~g~~~~~~~~~~Vgr~r~~~~~~l~~~~~~DNL~KGAAg~AVQn~nl~~~ 353 (359)
T 4dpk_A 299 QVYFDRWAGDIPGMSVVVGRLKQVNKRMIRLVSLIHNTVRGAAGGGILAAELLVE 353 (359)
T ss_dssp CHHHHTTCTTTTTCSEEEEEEEEEETTEEEEEEEECTTTTTTHHHHHHHHHHHHH
T ss_pred CHHHhhccCCCcCCeEEEEEEEEcCCCEEEEEEEEhhhhHhHHHHHHHHHHHHHH
Confidence 999998776 49999988545779999999999999999999999999975
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-73 Score=568.79 Aligned_cols=315 Identities=23% Similarity=0.376 Sum_probs=280.9
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEe-ccCcCCccccccccCcc-------ccCCCcccccCcccCCCCCEE
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT-ADRKAGQSIGSVFPHLI-------SQDLPTMVAVKDADFSNVDAV 133 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~-s~~~~G~~i~~v~p~l~-------~~~~~~~~~~~~~~~~~vDvV 133 (406)
+|+||+|+||||++|++++|+|.+||++|+++++ +++++|+.+.++||++. +.++. +.+.++++|.++|+|
T Consensus 3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~vDvV 81 (350)
T 2ep5_A 3 DKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLP-IVSTNYEDHKDVDVV 81 (350)
T ss_dssp CCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCB-EECSSGGGGTTCSEE
T ss_pred CCcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeE-EeeCCHHHhcCCCEE
Confidence 4689999999999999999999999999999997 67789999999888762 22332 333444556789999
Q ss_pred EEcCCCcchHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhcc-CCcEEecCCCh
Q 015441 134 FCCLPHGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIK-NARLVANPGCY 211 (406)
Q Consensus 134 F~al~~~~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~-~~~iVanPgC~ 211 (406)
|+|+|++.++++++.+ ++|++|||+|++|||++ +.|+.+||+|.+ .||+||++|++++ ++++|||||||
T Consensus 82 f~atp~~~s~~~a~~~~~aG~~VId~s~~~R~~~--------~~~~~vpevn~~-~~~~~e~~r~~~~~~~~iIanpgC~ 152 (350)
T 2ep5_A 82 LSALPNELAESIELELVKNGKIVVSNASPFRMDP--------DVPLINPEINWE-HLELLKFQKERKGWKGILVKNPNCT 152 (350)
T ss_dssp EECCCHHHHHHHHHHHHHTTCEEEECSSTTTTCT--------TSCBCCHHHHGG-GGGGHHHHHHHHTCSSEEEECCCHH
T ss_pred EECCChHHHHHHHHHHHHCCCEEEECCccccCCC--------CCCeeCCccCHH-HhcChHhhhhhcccCceEEEcCchH
Confidence 9999999999999875 78999999999999996 478999999876 6999999999887 78999999999
Q ss_pred HHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhcCcccccCCc-ccchhhhhhhhccccC-----C
Q 015441 212 PTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTR-HRHVPEIEQGLTGFAS-----S 285 (406)
Q Consensus 212 tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni~py~~~~-h~h~pEi~~~l~~i~~-----~ 285 (406)
||+++++|+||+++ +++++++|+|+||+||+|+.+. ++.++++|++||+.+. |+|+||+++.|..+.+ +
T Consensus 153 tt~~~l~l~pL~~~--~gi~~i~v~t~~~~SGaG~~~~---~~~~~~~ni~py~~~~e~k~~~E~~~~l~~~~g~~~~~~ 227 (350)
T 2ep5_A 153 AAIMSMPIKPLIEI--ATKSKIIITTLQAVSGAGYNGI---SFMAIEGNIIPYIKGEEDKIAKELTKLNGKLENNQIIPA 227 (350)
T ss_dssp HHHHHHHHGGGHHH--HHTSEEEEEEEECGGGGCSSSS---BHHHHTTCCBCCCTTHHHHHHHHHHHHTCEECSSSEECC
T ss_pred HHHHHHHHHHHHHh--cCCcEEEEEEEEecCcCCCCCC---CChHHhCCEEeccCCcchHHHHHHHHHHhhccccccccc
Confidence 99999999999997 6788999999999999999953 5679999999999995 9999999998877655 3
Q ss_pred CceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcC----------CCCcEEecCCCCccccccccCCCc---
Q 015441 286 KVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYE----------HEEFVKLLEKGVVPRTHNVRGSNY--- 352 (406)
Q Consensus 286 ~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~----------~~~fV~v~~~~~~P~~~~v~g~n~--- 352 (406)
.++|+|||||||++|||++++|++++++++.+||+++|+++|. +++||++.+++.+|+|+.++|+|.
T Consensus 228 ~~~v~~t~~rvP~~~g~~~~i~~~l~~~~t~eei~~~~~~~~~~~~~~~~~~~~~~fv~v~~~~~~P~~~~~~~~~~~~~ 307 (350)
T 2ep5_A 228 NLDSTVTSIRVPTRVGHMGVINIVTNERINIEEIKKTLKNFKSLPQQKNLPTAPKQPIIVRDEEDRPQPIIDVNAESGMA 307 (350)
T ss_dssp CCEEEEEEEECSCSSCEEEEEEEECCSCCCHHHHHHHHHTCCCHHHHTTCTTCCSCSEEECCSTTCCCHHHHTTHHHHTS
T ss_pred cccEEEEeEEecccceEEEEEEEEECCCCCHHHHHHHHHHhhccccccccCCCCCCcEEECCCCCCCceEEecccCCCce
Confidence 6799999999999999999999999999999999999999998 999999999888999998887765
Q ss_pred EEEEEEEeCcCCeEEEEEEehhhhHhHHHHHHHHHHHHhC
Q 015441 353 CLMNVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMLG 392 (406)
Q Consensus 353 ~~v~~~~~~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~g 392 (406)
|+|||++.+. +++.+|+++|||+||||||||||||+|++
T Consensus 308 ~~vgr~~~d~-~~l~~~~~~DNl~kGAAg~Avqn~nl~~~ 346 (350)
T 2ep5_A 308 VTVGRIRHEN-NVLRLVVLGDNLVRGAAGITILTVEVMKE 346 (350)
T ss_dssp EEEEEEEEET-TEEEEEEEECTTTTTTHHHHHHHHHHHHH
T ss_pred EEEEEEEecC-CEEEEEEEeccHHHhHHHHHHHHHHHHHh
Confidence 9999876544 57999999999999999999999999986
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-71 Score=554.98 Aligned_cols=301 Identities=21% Similarity=0.302 Sum_probs=259.2
Q ss_pred CccEEEEECcccHHHHHHHHHHHcC--CCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANH--PYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~h--p~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
|++||+|+|||||+|++|+|+|++| |..+++.+++++++|+++.. .+.++. +++.+++++.++|+||+|+|+
T Consensus 1 m~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~~-----~~~~~~-~~~~~~~~~~~~Dvvf~a~~~ 74 (366)
T 3pwk_A 1 MGYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKF-----KDQDIT-IEETTETAFEGVDIALFSAGS 74 (366)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEEE-----TTEEEE-EEECCTTTTTTCSEEEECSCH
T ss_pred CCcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCccee-----cCCCce-EeeCCHHHhcCCCEEEECCCh
Confidence 5789999999999999999999986 99999999999999999873 333332 445555667899999999999
Q ss_pred cchHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccC-CcEEecCCChHHHHHH
Q 015441 140 GTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKN-ARLVANPGCYPTSIQL 217 (406)
Q Consensus 140 ~~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~-~~iVanPgC~tta~~l 217 (406)
+.++++++.+ ++|++|||+|++|||+++ . .|++||+|++.++. +++|||||||||++++
T Consensus 75 ~~s~~~a~~~~~~G~~vIDlSa~~R~~~~--------~-----------p~~vpevN~~~i~~~~~iIanpgC~tt~~~l 135 (366)
T 3pwk_A 75 STSAKYAPYAVKAGVVVVDNTSYFRQNPD--------V-----------PLVVPEVNAHALDAHNGIIACPNCSTIQMMV 135 (366)
T ss_dssp HHHHHHHHHHHHTTCEEEECSSTTTTCTT--------S-----------CBCCHHHHGGGGTTCCSEEECCCHHHHHHHH
T ss_pred HhHHHHHHHHHHCCCEEEEcCCccccCCC--------c-----------eEEEccCCHHHHcCCCCeEECCCcHHHHHHH
Confidence 9999999875 789999999999999762 2 37888899988887 8999999999999999
Q ss_pred HHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHH--H-Hhc-------CcccccCC-cccc-------hhhhhhhh
Q 015441 218 PLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYS--E-IAE-------GIYSYGVT-RHRH-------VPEIEQGL 279 (406)
Q Consensus 218 ~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~--e-~~~-------ni~py~~~-~h~h-------~pEi~~~l 279 (406)
+|+||++. +++++++|+|+||+||||+++++++++. + .++ +.++|+++ .||| +|||++.+
T Consensus 136 ~l~pL~~~--~~i~~i~v~t~~~vSGAG~~~~~~l~~~~~~~~~~~~~~~~~~~~~y~~~~~HrH~~ia~NviP~I~~~~ 213 (366)
T 3pwk_A 136 ALEPVRQK--WGLDRIIVSTYQAVSGAGMGAILETQRELREVLNDGVKPCDLHAEILPSGGDKKHYPIAFNALPQIDVFT 213 (366)
T ss_dssp HHHHHHHH--HCCSEEEEEEEBCGGGGCHHHHHHHHHHHHHHHHHCCCGGGCCCSSSSCTTSSCCCCCTTCCBCCSSCBC
T ss_pred HHHHHHHh--CCCcEEEEEEEEeccccCcchhhHHHHHHHHHhcccccccccCcccCCcccccccchhhccccceecccc
Confidence 99999998 4678999999999999999999975432 1 232 56778764 5999 99997533
Q ss_pred ---------------cccc-CCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCC---C
Q 015441 280 ---------------TGFA-SSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKG---V 340 (406)
Q Consensus 280 ---------------~~i~-~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~---~ 340 (406)
.+++ +..++|+||||||||+|||++|+|++++++++.+|++++|+++ |||++.+++ .
T Consensus 214 ~~g~t~EE~k~~~E~~kil~~~~~~v~ftp~rVPv~rG~~~tv~v~l~~~~s~eei~~~l~~~----~~V~v~~~~~~~~ 289 (366)
T 3pwk_A 214 DNDYTYEEMKMTKETKKIMEDDSIAVSATCVRIPVLSAHSESVYIETKEVAPIEEVKAAIAAF----PGAVLEDDVAHQI 289 (366)
T ss_dssp TTSSBHHHHHHHHHHHHHTTCTTSEEEEECCBCSCSSCEEEEEEEECSSCCCHHHHHHHHHHS----TTEEECCBGGGTB
T ss_pred cCCCcHHHHHHHHHHHHHhcCCCCCeEEEEEEechhccEEEEEEEEECCCCCHHHHHHHHHhC----CCcEEecCcccCC
Confidence 2444 4678999999999999999999999999999999999999997 899998753 5
Q ss_pred ccccccccCCCcEEEEEEEeC--cCCeEEEEEEehhhhHhHHHHHHHHHHHHhCC
Q 015441 341 VPRTHNVRGSNYCLMNVFPDR--IPGRAIIISVIDNLVKGASGQALQNLNIMLGF 393 (406)
Q Consensus 341 ~P~~~~v~g~n~~~v~~~~~~--~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~g~ 393 (406)
+|+|+++.|+|.|+|||++.+ .++++++|+++|||+||||||||||||+|++.
T Consensus 290 ~P~~~~v~gtn~~~Vgr~r~d~~~~~~l~~~~~~DNL~KGAAg~AVQn~nlm~~~ 344 (366)
T 3pwk_A 290 YPQAINAVGSRDTFVGRIRKDLDAEKGIHMWVVSDNLLKGAAWNSVQIAETLHER 344 (366)
T ss_dssp CCCHHHHTTCSSEEEEEEEECSSCTTEEEEEEEECTTTTTTHHHHHHHHHHHHHT
T ss_pred CCchhHcCCCCEEEEEEEEecCCCCCEEEEEEEEccHHHhHHHHHHHHHHHHHHc
Confidence 899999999999999998754 35789999999999999999999999999875
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-70 Score=549.99 Aligned_cols=315 Identities=19% Similarity=0.339 Sum_probs=277.5
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEe-ccCcCCccccccccCcc-------ccCCCcccccCcccC-C-CCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT-ADRKAGQSIGSVFPHLI-------SQDLPTMVAVKDADF-S-NVD 131 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~-s~~~~G~~i~~v~p~l~-------~~~~~~~~~~~~~~~-~-~vD 131 (406)
||+||+|+||||++|++++|+|.+||++++++++ +++++|+.++++|+++. +.++. +...+.++| . ++|
T Consensus 7 M~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D 85 (354)
T 1ys4_A 7 MKIKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMV-VIPTDPKHEEFEDVD 85 (354)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCB-CEESCTTSGGGTTCC
T ss_pred ccceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeE-EEeCCHHHHhcCCCC
Confidence 4589999999999999999999999999999997 56788999988888762 12332 222344456 5 899
Q ss_pred EEEEcCCCcchHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhcc-CCcEEecCC
Q 015441 132 AVFCCLPHGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIK-NARLVANPG 209 (406)
Q Consensus 132 vVF~al~~~~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~-~~~iVanPg 209 (406)
+||+|+|++.++++++.+ ++|++|||+|++|||++ +.|+.+||+|.+ .|+++|++|++++ ++++|+|||
T Consensus 86 vV~~atp~~~~~~~a~~~~~aG~~VId~s~~~R~~~--------~~~~~vpevn~~-~~~~~e~~r~~~~~~~~iIanpg 156 (354)
T 1ys4_A 86 IVFSALPSDLAKKFEPEFAKEGKLIFSNASAYRMEE--------DVPLVIPEVNAD-HLELIEIQREKRGWDGAIITNPN 156 (354)
T ss_dssp EEEECCCHHHHHHHHHHHHHTTCEEEECCSTTTTCT--------TSCBCCHHHHGG-GGGHHHHHHHHHCCSSEEEECCC
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEECCchhcCCC--------CCCccCcccCHH-HhcChhhhhhhcccCCeEEECCC
Confidence 999999999999999875 78999999999999986 468999999876 6999999998887 788999999
Q ss_pred ChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhcCcccccCCc-ccchhhhhhhhccccC----
Q 015441 210 CYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTR-HRHVPEIEQGLTGFAS---- 284 (406)
Q Consensus 210 C~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni~py~~~~-h~h~pEi~~~l~~i~~---- 284 (406)
||||+++++|+||+++ +++++++++|+||+||+|+.+. ++.++++|++||+.+. |+|+||+++.|..+.+
T Consensus 157 C~tt~~~l~l~pL~~~--~gi~~~~v~t~~~~SGaG~~~~---~~~~~~~ni~py~~~~~~k~~~Ei~~~l~~~~g~~~~ 231 (354)
T 1ys4_A 157 CSTICAVITLKPIMDK--FGLEAVFIATMQAVSGAGYNGV---PSMAILDNLIPFIKNEEEKMQTESLKLLGTLKDGKVE 231 (354)
T ss_dssp HHHHHHHHHHHHHHHH--HCCSEEEEEEEBCSGGGCTTTS---CHHHHTTCCBSCCTTHHHHHHHHHHHHTSEEETTEEE
T ss_pred HHHHHHHHHHHHHHHh--cCCcEEEEEEEEEcCcCCcccc---cchHHhCCEEeccCchhhHHHHHHHHHHhcccccccc
Confidence 9999999999999996 3568999999999999999853 5679999999999995 9999999998876544
Q ss_pred -CCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcC---------CCCcEEecCCCCccccccccCCCc--
Q 015441 285 -SKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYE---------HEEFVKLLEKGVVPRTHNVRGSNY-- 352 (406)
Q Consensus 285 -~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~---------~~~fV~v~~~~~~P~~~~v~g~n~-- 352 (406)
..++|+|+||||||+|||++++|++++++++.|||+++|+++|. + |||+|.+++.+|+|+.+.|+|.
T Consensus 232 ~~~~~v~~~~~rvP~~~G~~~~i~~~l~~~~t~eei~~~~~~~~~~~~~~~~~~~-~fv~v~~~~~~p~~~~~~~~~~~~ 310 (354)
T 1ys4_A 232 LANFKISASCNRVAVIDGHTESIFVKTKEGAEPEEIKEVMDKFDPLKDLNLPTYA-KPIVIREEIDRPQPRLDRNEGNGM 310 (354)
T ss_dssp CCCCEEEEECCBCSCSSCEEEEEEEECSSCCCHHHHHHHHHHCCTTTTSCCTTCC-CSEEECCSTTCCCHHHHTTGGGGT
T ss_pred CCCceEEEEEEEecccceEEEEEEEEECCCCCHHHHHHHHHHhhccccccccCCC-CcEEEecCCCCCCceeecccCCCc
Confidence 35789999999999999999999999999999999999999997 8 9999999888999999888876
Q ss_pred -EEEEEEEeCcCCeEEEEEEehhhhHhHHHHHHHHHHHHhC
Q 015441 353 -CLMNVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMLG 392 (406)
Q Consensus 353 -~~v~~~~~~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~g 392 (406)
|+||+++.+..+++.+|+++|||+||||||||||||+|++
T Consensus 311 ~~~vgr~~~~~~~~~~~~~~~DNl~kGAAg~Avqn~nl~~~ 351 (354)
T 1ys4_A 311 SIVVGRIRKDPIFDVKYTALEHNTIRGAAGASVLNAEYFVK 351 (354)
T ss_dssp SEEEEEEEECSSSSEEEEEEECTTTTTTHHHHHHHHHHHHH
T ss_pred eEEEeeEeeCCCCeEEEEEEehhhHHhHHHHHHHHHHHHHH
Confidence 9999887655468999999999999999999999999984
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-70 Score=545.65 Aligned_cols=294 Identities=19% Similarity=0.276 Sum_probs=254.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcC--CCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANH--PYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~h--p~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
+||||+|||||+|++|+|+|++| |.++++.++|++++|+++. |.+.++. +++.++++|.++|+||+|+|++.
T Consensus 2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~-----~~~~~~~-~~~~~~~~~~~~Dvvf~a~~~~~ 75 (344)
T 3tz6_A 2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLA-----FRGQEIE-VEDAETADPSGLDIALFSAGSAM 75 (344)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEE-----ETTEEEE-EEETTTSCCTTCSEEEECSCHHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCcee-----ecCCceE-EEeCCHHHhccCCEEEECCChHH
Confidence 68999999999999999999987 9999999999999999987 3343432 44555667789999999999999
Q ss_pred hHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccch-hhccC--CcEEecCCChHHHHHH
Q 015441 142 TQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISR-EDIKN--ARLVANPGCYPTSIQL 217 (406)
Q Consensus 142 s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~-~~i~~--~~iVanPgC~tta~~l 217 (406)
++++++.+ ++|++|||+|++|||+++ .| |++||+|+ +.++. .++|||||||||++++
T Consensus 76 s~~~a~~~~~~G~~vID~Sa~~R~~~~--------~p-----------~~vpevN~~~~i~~~~~~iIanpgC~tt~~~l 136 (344)
T 3tz6_A 76 SKVQAPRFAAAGVTVIDNSSAWRKDPD--------VP-----------LVVSEVNFERDAHRRPKGIIANPNCTTMAAMP 136 (344)
T ss_dssp HHHHHHHHHHTTCEEEECSSTTTTCTT--------SC-----------BCCTTTSHHHHTTCCTTSEEECCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEECCCccccCCC--------cc-----------EEEccCCCHHHhhhcCCCEEECCCcHHHHHHH
Confidence 99999875 789999999999999762 33 67888888 77876 4899999999999999
Q ss_pred HHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHh------------------------cCcccccCCc-----
Q 015441 218 PLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIA------------------------EGIYSYGVTR----- 268 (406)
Q Consensus 218 ~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~------------------------~ni~py~~~~----- 268 (406)
+|+||++++ ++++++|+|+||+||||++++++++ .++. .+..+|++..
T Consensus 137 ~l~pL~~~~--~i~~i~v~t~~~~SGAG~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aynv~p~i~~~ 213 (344)
T 3tz6_A 137 VLKVLHDEA--RLVRLVVSSYQAVSGSGLAGVAELA-EQARAVIGGAEQLVYDGGALEFPPPNTYVAPIAFNVVPLAGSL 213 (344)
T ss_dssp HHHHHHHHH--CEEEEEEEEEBCGGGGCHHHHHHHH-HHHHHHGGGGGGGGTCTTSSCCCCCSSSSSCCTTCCBCCCSCB
T ss_pred HHHHHHHhC--CCceEEEEeccCCCccChhhhHHHH-HHHHhhhcccccccccccccccccccccccccccccccccccc
Confidence 999999984 6789999999999999999998854 3332 2335566554
Q ss_pred ----ccchhh---hhhhhccccC-CCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCC
Q 015441 269 ----HRHVPE---IEQGLTGFAS-SKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGV 340 (406)
Q Consensus 269 ----h~h~pE---i~~~l~~i~~-~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~ 340 (406)
|||+|| |.+++.++++ +.++|+||||||||+|||++++|++++++++.+|++++|+++ |||++.+
T Consensus 214 ~~~ghrHt~EE~k~~~e~~kilg~~~~~v~ft~vrvPv~rGh~~tv~v~l~~~~s~eei~~~l~~~----p~V~v~~--- 286 (344)
T 3tz6_A 214 VDDGSGETDEDQKLRFESRKILGIPDLLVSGTCVRVPVFTGHSLSINAEFAQPLSPERARELLDGA----TGVQLVD--- 286 (344)
T ss_dssp CSSSSCCBHHHHHHHHHHHHHHTCTTCEEEEECCBCSCSSCEEEEEEEEESSCCCHHHHHHHHHHC----TTEEECS---
T ss_pred ccCCCcCCHHHHHHHHHHHHhcCCCCCceEEEEEEeceeceEEEEEEEEECCCCCHHHHHHHHhcC----CCeEEEC---
Confidence 599999 7777778887 678999999999999999999999999999999999999964 9999986
Q ss_pred ccccccccCCCcEEEEEEEeCc----CCeEEEEEEehhhhHhHHHHHHHHHHHHhC
Q 015441 341 VPRTHNVRGSNYCLMNVFPDRI----PGRAIIISVIDNLVKGASGQALQNLNIMLG 392 (406)
Q Consensus 341 ~P~~~~v~g~n~~~v~~~~~~~----~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~g 392 (406)
+|+|+++.|+|.|+|||++.+. .+++.+|+++|||+||||||||||||+|+.
T Consensus 287 ~P~p~~v~gtn~~~Vgrir~d~~~~~~~~l~~~~~~DNL~KGAAg~AVQ~anll~~ 342 (344)
T 3tz6_A 287 VPTPLAAAGVDESLVGRIRRDPGVPDGRGLALFVSGDNLRKGAALNTIQIAELLTA 342 (344)
T ss_dssp SCCHHHHTTCSSEEEEEEEECTTSGGGCEEEEEEEECTTTTTTHHHHHHHHHHHTC
T ss_pred CCChHHhCCCceEEEEEEEecCCCCCCCEEEEEEEEcchhHhHHHHHHHHHHHHHh
Confidence 8999999999999999887653 348999999999999999999999999974
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-70 Score=548.70 Aligned_cols=299 Identities=16% Similarity=0.201 Sum_probs=252.6
Q ss_pred ccEEEEECcccHHHHHHHH-HHHcCC--CceEEEEeccCcCCccccccccCccccCCCccccc-CcccCCCCCEEEEcCC
Q 015441 63 QVRIGLLGASGYTGAEIVR-LLANHP--YFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAV-KDADFSNVDAVFCCLP 138 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlr-lL~~hp--~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~-~~~~~~~vDvVF~al~ 138 (406)
++||||+|||||+|++|+| +|++|| ..+++.++++ ++|+++.. |.+.++. +++. ++++|.++|+||+|+|
T Consensus 4 ~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~-~aG~~~~~----~~~~~~~-v~~~~~~~~~~~vDvvf~a~~ 77 (377)
T 3uw3_A 4 SMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTS-NAGGKAPS----FAKNETT-LKDATSIDDLKKCDVIITCQG 77 (377)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS-CTTSBCCT----TCCSCCB-CEETTCHHHHHTCSEEEECSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEech-hcCCCHHH----cCCCceE-EEeCCChhHhcCCCEEEECCC
Confidence 3799999999999999999 999998 6889888876 89998765 2333332 3333 2345679999999999
Q ss_pred CcchHHHHhhC-CCCC--EEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccC---C--cEEecCCC
Q 015441 139 HGTTQEIIKGL-PKSL--KIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKN---A--RLVANPGC 210 (406)
Q Consensus 139 ~~~s~~~~~~l-~~G~--~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~---~--~iVanPgC 210 (406)
++.++++++.+ ++|+ +|||+|++||++++ . .|++||+|++.++. . ++||||||
T Consensus 78 ~~~s~~~~~~~~~~G~k~~VID~ss~fR~~~~--------~-----------p~~vpevN~~~i~~~~~~~i~~Ianp~C 138 (377)
T 3uw3_A 78 GDYTNDVFPKLRAAGWNGYWIDAASSLRMKDD--------A-----------VIILDPVNLNVIKDALVNGTKNFIGGNC 138 (377)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEECSSTTTTCTT--------E-----------EEECHHHHHHHHHHHHHTTCCEEEECCH
T ss_pred hHHHHHHHHHHHHCCCCEEEEeCCcccccCCC--------C-----------ceECCcCCHHHHhhhhhcCCcEEEcCCH
Confidence 99999999875 7886 89999999999762 2 36777777777753 2 45999999
Q ss_pred hHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHH----------------------------------
Q 015441 211 YPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSE---------------------------------- 256 (406)
Q Consensus 211 ~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e---------------------------------- 256 (406)
|||+++++|+||+++ +++++++|+|+||+||||++++++++ .|
T Consensus 139 ~tt~~~l~L~pL~~~--~~I~~i~v~t~~avSGAG~~~~~el~-~q~~~l~~~~~~~~~~p~~~ild~~~~~~~~~~~~~ 215 (377)
T 3uw3_A 139 TVSLMLMALGGLFRE--NLVDWMTAMTYQAASGAGAQNMRELL-AQMGTLNGAVAAQLADPASAILDIDRRVLAAMNGDA 215 (377)
T ss_dssp HHHHHHHHHHHHHHT--TCEEEEEEEEEBCGGGTCHHHHHHHH-HHHHHHHHTTHHHHTCTTSCHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHh--CCCCEEEEeeeecccccchhhHHHHH-HHHHHhhccccccccccccccccccccccccccccc
Confidence 999999999999998 46789999999999999999988643 22
Q ss_pred ---------HhcCcccccCC--cccchhh---hhhhhccccCC-------CceEEEEEEEeeecceeEEEEEEEeCCCCC
Q 015441 257 ---------IAEGIYSYGVT--RHRHVPE---IEQGLTGFASS-------KVTVSFTPHLMPMIRGMQSTIYVEMAPGVT 315 (406)
Q Consensus 257 ---------~~~ni~py~~~--~h~h~pE---i~~~l~~i~~~-------~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s 315 (406)
++.|+.||... .|+|.+| |++++.++++. .++|+||||||||+|||++++|++|+++++
T Consensus 216 ~~~~~f~~~ia~N~~P~i~~~~~~g~t~EE~ki~~E~~kilg~~~~~~~~~i~Vs~t~vrVPv~rGh~~tv~v~~~~~~~ 295 (377)
T 3uw3_A 216 MPTSQFGVPLAGSLIPWIDKDLGNGMSREEWKGGAETNKILGKPAMGEPGSVPVDGLCVRIGAMRCHSQALTIKLKKDVP 295 (377)
T ss_dssp SCCTTTSSCCTBSCBSCCSCBCSSSCBHHHHHHHHHHHHHHTCCCTTSTTCCCEEEECCBCSBSSEEEEEEEEEESSCCC
T ss_pred cccccccccccCceEEeecccccCCCCHHHHHHHHHHHHHhcccccccCCCceEEEEeEEecccceEEEEEEEEeCCCCC
Confidence 34688888653 5665554 88888888875 789999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCcEEecCCC-----CccccccccCCCcEEEEEEEeC--cCCeEEEEEEehhhhHhHHHHHHHHHH
Q 015441 316 IEDLYQQLKISYEHEEFVKLLEKG-----VVPRTHNVRGSNYCLMNVFPDR--IPGRAIIISVIDNLVKGASGQALQNLN 388 (406)
Q Consensus 316 ~eev~~~l~~~y~~~~fV~v~~~~-----~~P~~~~v~g~n~~~v~~~~~~--~~~~~~~~~v~DNL~KGAAgqAVQ~~n 388 (406)
.+|++++|+++ +|||++++++ .+|+|+++.|+|.|+|||+|.+ .++++.+|+++|||+||||||||||||
T Consensus 296 ~eei~~~l~~~---~p~V~v~~~~~~~~~~~P~p~~v~G~n~v~VGrir~d~~~~~~l~~~~v~DNL~KGAAgqAvqn~n 372 (377)
T 3uw3_A 296 LDEINGILASA---NDWVKVVPNEREASMRDLSPAKVTGTLSVPVGRLRKLAMGGEYLSAFTVGDQLLWGAAEPLRRMLR 372 (377)
T ss_dssp HHHHHHHHHTS---CSSEEECCSSHHHHHHHSSHHHHTTSSCEEEEEEEECTTCTTEEEEEEEEETTCCCCCHHHHHHHH
T ss_pred HHHHHHHHHhC---CCCEEEecCCcccccCCCCHHHhcCCCcEEEEEEEECCCCCCEEEEEEEehhhhHhHHHHHHHHHH
Confidence 99999999987 5899999875 4899999999999999998854 357999999999999999999999999
Q ss_pred HHhC
Q 015441 389 IMLG 392 (406)
Q Consensus 389 l~~g 392 (406)
+|+.
T Consensus 373 l~~~ 376 (377)
T 3uw3_A 373 ILLD 376 (377)
T ss_dssp HHHC
T ss_pred HHhh
Confidence 9983
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-69 Score=545.28 Aligned_cols=297 Identities=14% Similarity=0.197 Sum_probs=250.5
Q ss_pred cEEEEECcccHHHHHHHH-HHHcCC--CceEEEEeccCcCCccccccccCccccCCCccccc-CcccCCCCCEEEEcCCC
Q 015441 64 VRIGLLGASGYTGAEIVR-LLANHP--YFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAV-KDADFSNVDAVFCCLPH 139 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlr-lL~~hp--~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~-~~~~~~~vDvVF~al~~ 139 (406)
+||||+|||||+|++|+| +|++|| ..+++++++++ +|+++.+. .+.++. +++. ++++|.++|+||+|+|+
T Consensus 1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~-aG~~~~~~----~~~~~~-~~~~~~~~~~~~~Dvvf~a~~~ 74 (370)
T 3pzr_A 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQ-IGVPAPNF----GKDAGM-LHDAFDIESLKQLDAVITCQGG 74 (370)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSS-TTSBCCCS----SSCCCB-CEETTCHHHHTTCSEEEECSCH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccc-cCcCHHHh----CCCceE-EEecCChhHhccCCEEEECCCh
Confidence 589999999999999999 999998 68898898876 99987652 333332 3333 23457899999999999
Q ss_pred cchHHHHhhC-CCCC--EEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccC---C--cEEecCCCh
Q 015441 140 GTTQEIIKGL-PKSL--KIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKN---A--RLVANPGCY 211 (406)
Q Consensus 140 ~~s~~~~~~l-~~G~--~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~---~--~iVanPgC~ 211 (406)
+.++++++.+ ++|+ +|||+|++||++++ . .|++||+|+++++. . ++|||||||
T Consensus 75 ~~s~~~~~~~~~~G~k~~VID~ss~fR~~~~--------~-----------p~~vpevN~~~i~~~~~~~i~~Ianp~C~ 135 (370)
T 3pzr_A 75 SYTEKVYPALRQAGWKGYWIDAASTLRMDKE--------A-----------IITLDPVNLKQILHGIHHGTKTFVGGNCT 135 (370)
T ss_dssp HHHHHHHHHHHHTTCCCEEEECSSTTTTCTT--------E-----------EEECHHHHHHHHHHHHHTTCCEEEECCHH
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCchhccCCC--------C-----------cEEcccCCHHHHhhhhhcCCcEEEcCChH
Confidence 9999999875 7785 89999999999762 2 37778888777753 2 469999999
Q ss_pred HHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHH-----------------------------------
Q 015441 212 PTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSE----------------------------------- 256 (406)
Q Consensus 212 tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e----------------------------------- 256 (406)
||+++++|+||+++ +++++++|+|+||+||||+++++++ +.|
T Consensus 136 tt~~~l~L~pL~~~--~~I~~i~v~t~~avSGAG~~~~~el-~~q~~~~~~~~~~~l~~p~~~ild~~~~~~~~~~~~~~ 212 (370)
T 3pzr_A 136 VSLMLMALGGLYER--GLVEWMSAMTYQAASGAGAQNMREL-ISQMGVINDAVSSELANPASSILDIDKKVAETMRSGSF 212 (370)
T ss_dssp HHHHHHHHHHHHHT--TCEEEEEEEEEBCGGGTCHHHHHHH-HHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHHh--CCCcEEEEEeEEeccccChhhHHHH-HHHHHHhhcccccccccccccccccccccccccccccc
Confidence 99999999999998 4678999999999999999998864 322
Q ss_pred --------HhcCcccccCC--cccc---hhhhhhhhccccC---CCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHH
Q 015441 257 --------IAEGIYSYGVT--RHRH---VPEIEQGLTGFAS---SKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLY 320 (406)
Q Consensus 257 --------~~~ni~py~~~--~h~h---~pEi~~~l~~i~~---~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~ 320 (406)
++.|+.||... .|+| .++|++++.++++ +.++|+||||||||+|||++++|++|+++++.+|++
T Consensus 213 ~~~~f~~~ia~N~~P~i~~~~~~g~t~EE~ki~~E~~kilg~~~~~i~V~~t~vrVPv~rGh~~tv~v~~~~~~~~~ei~ 292 (370)
T 3pzr_A 213 PTDNFGVPLAGSLIPWIDVKRDNGQSKEEWKAGVEANKILGLQDSPVPIDGTCVRIGAMRCHSQALTIKLKQNIPLDEIE 292 (370)
T ss_dssp CCTTTSSCCTTSEESCCSCBCTTSCBHHHHHHHHHHHHHTTCTTSCCCEECCCCEESCSSEEEEEEEEEESSCCCHHHHH
T ss_pred ccccccccccCceeeeccccccCCCCHHHHHHHHHHHHHhCccCCCceEEEEeEEecccceEEEEEEEEeCCCCCHHHHH
Confidence 23577788643 4544 5559999999988 579999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCcEEecCCC-----CccccccccCCCcEEEEEEEeC-c-CCeEEEEEEehhhhHhHHHHHHHHHHHHh
Q 015441 321 QQLKISYEHEEFVKLLEKG-----VVPRTHNVRGSNYCLMNVFPDR-I-PGRAIIISVIDNLVKGASGQALQNLNIML 391 (406)
Q Consensus 321 ~~l~~~y~~~~fV~v~~~~-----~~P~~~~v~g~n~~~v~~~~~~-~-~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~ 391 (406)
++|+++ +|||++++++ .+|+|+++.|+|.|+|||++.+ . ++++.+|+++|||+||||||||||||+|+
T Consensus 293 ~~l~~~---~p~V~v~~~~~~~~~~~P~p~~v~G~n~v~VGrir~d~~~~~~l~~~~v~DNL~KGAAgqAvQn~Nl~~ 367 (370)
T 3pzr_A 293 EMIATH---NDWVKVIPNERDITARELTPAKVTGTLSVPVGRLRKMAMGDDFLNAFTVGDQLLWGAAEPLRRTLRIIL 367 (370)
T ss_dssp HHHHTS---CSSEEECCSCHHHHHHHSSHHHHTTSCCEEEEEEEEETTEEEEEEEEEEEETTTTTTHHHHHHHHHHHH
T ss_pred HHHHhC---CCCEEEecCCcccccCCCCHHHhcCCccEEEEEEEECCCCCCEEEEEEEehhhhHhHHHHHHHHHHHHH
Confidence 999987 5899999875 4899999999999999998754 2 47899999999999999999999999996
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-68 Score=533.46 Aligned_cols=300 Identities=18% Similarity=0.283 Sum_probs=249.7
Q ss_pred CccEEEEECcccHHHHHHHHHHHcC--CCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANH--PYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~h--p~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
+|+||+|+||||++|++|+|+|.+| |++|++++++++++|+.+. +.+.++. +.+.+++.|.++|+||+|+|+
T Consensus 2 ~~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~-----~~~~~i~-~~~~~~~~~~~vDvVf~a~g~ 75 (336)
T 2r00_A 2 QQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYR-----FNGKTVR-VQNVEEFDWSQVHIALFSAGG 75 (336)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEE-----ETTEEEE-EEEGGGCCGGGCSEEEECSCH
T ss_pred CccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCcee-----ecCceeE-EecCChHHhcCCCEEEECCCc
Confidence 3689999999999999999999987 9999999999889998765 2232332 233344567789999999999
Q ss_pred cchHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccC---CcEEecCCChHHHH
Q 015441 140 GTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKN---ARLVANPGCYPTSI 215 (406)
Q Consensus 140 ~~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~---~~iVanPgC~tta~ 215 (406)
+.++++++.+ ++|++|||+|++||+++ + +.|++||+|++++++ +++|||||||||++
T Consensus 76 ~~s~~~a~~~~~~G~~vId~s~~~R~~~--------~-----------~~~~vpevN~~~i~~~~~~~iIanp~C~tt~~ 136 (336)
T 2r00_A 76 ELSAKWAPIAAEAGVVVIDNTSHFRYDY--------D-----------IPLVVPEVNPEAIAEFRNRNIIANPNCSTIQM 136 (336)
T ss_dssp HHHHHHHHHHHHTTCEEEECSSTTTTCT--------T-----------SCBCCTTTCGGGGGGGGGTTEEECCCHHHHHH
T ss_pred hHHHHHHHHHHHcCCEEEEcCCccccCC--------C-----------CCeEeccCCHHHhccccCCcEEECCChHHHHH
Confidence 9999999875 78999999999999975 2 358888889888875 77999999999999
Q ss_pred HHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccH--------HHHhcCccccc----CCcc-------cchhh--
Q 015441 216 QLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLY--------SEIAEGIYSYG----VTRH-------RHVPE-- 274 (406)
Q Consensus 216 ~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~--------~e~~~ni~py~----~~~h-------~h~pE-- 274 (406)
+++|+||++++ ++++++|+|+||+||+|++++++++. .+..++..||. +..| +|.||
T Consensus 137 ~~~l~pL~~~~--~i~~~~vtt~~~~SgaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~niip~~~~~~~~gh~~Ee~ 214 (336)
T 2r00_A 137 LVALKPIYDAV--GIERINVTTYQSVSGAGKAGIDELAGQTAKLLNGYPAETNTFSQQIAFNCIPQIDQFMDNGYTKEEM 214 (336)
T ss_dssp HHHHHHHHHHH--CEEEEEEEEEEESSSCCTTSCC-----------------------------CCBCTTTCSSCBHHHH
T ss_pred HHHHHHHHHhC--CccEEEEEEEEecccCChhhhHHHHHHHHHhhcCCCCCccccchhhhcCcccccCCcccCCccHHHH
Confidence 99999999984 67899999999999999999988543 12223343332 3344 68999
Q ss_pred -hhhhhccccC-CCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCccccc-cccCCC
Q 015441 275 -IEQGLTGFAS-SKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTH-NVRGSN 351 (406)
Q Consensus 275 -i~~~l~~i~~-~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~~-~v~g~n 351 (406)
+.+.+.++++ ...+|+|||+|||++|||+.++|++++++++.+|++++|+++ |||++.+.+.+|+|+ ++.|+|
T Consensus 215 k~~~e~~kil~~~~~~v~~t~~rVP~~~g~~~~~~~~l~~~~t~~ei~~~~~~~----~~v~v~~~~~~p~~~~~v~g~~ 290 (336)
T 2r00_A 215 KMVWETQKIFNDPSIMVNPTCVRVPVFYGHAEAVHVETRAPIDAEQVMDMLEQT----DGIELFRGADFPTQVRDAGGKD 290 (336)
T ss_dssp HHHHHHHHHTTCTTCEEEEEEEEESSCBSEEEEEEEEESSCCCHHHHHHHHHHS----TTEEECCCCSSGGGCCCCCSSS
T ss_pred HHHHHHHHHhCCCCCcEEEEeEEeccCcEEEEEEEEEeCCCCCHHHHHHHHHhC----CCeEEECCCCCCcCHHHhCCCc
Confidence 8888888875 568999999999999999999999999999999999999984 999999876799999 999999
Q ss_pred cEEEEEEEeC--cCCeEEEEEEehhhhHhHHHHHHHHHHHHhC
Q 015441 352 YCLMNVFPDR--IPGRAIIISVIDNLVKGASGQALQNLNIMLG 392 (406)
Q Consensus 352 ~~~v~~~~~~--~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~g 392 (406)
.|+|||++.+ .++++++|+++|||+||||||||||||+|++
T Consensus 291 ~~~vgr~~~d~~~~~~l~~~~~~DNl~kGAAg~Avq~~nl~~~ 333 (336)
T 2r00_A 291 HVLVGRVRNDISHHSGINLWVVADNVRKGAATNAVQIAELLVR 333 (336)
T ss_dssp CEEEEEEEEETTEEEEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEecCCCCCEEEEEEEehhHHHhHHHHHHHHHHHHHh
Confidence 9999988855 4578999999999999999999999999986
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-67 Score=526.33 Aligned_cols=299 Identities=19% Similarity=0.270 Sum_probs=260.7
Q ss_pred CccEEEEECcccHHHHHHHHHHH--cCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLA--NHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~--~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
|++||+|+||||++|++|+|+|. +||.+++++++++++.|+.+. +.+.++. +.+.+++.|.++|+||+|+|+
T Consensus 5 m~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~-----~~g~~i~-~~~~~~~~~~~~DvV~~a~g~ 78 (340)
T 2hjs_A 5 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMG-----FAESSLR-VGDVDSFDFSSVGLAFFAAAA 78 (340)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEE-----ETTEEEE-CEEGGGCCGGGCSEEEECSCH
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccc-----cCCcceE-EecCCHHHhcCCCEEEEcCCc
Confidence 45799999999999999999999 899999999999888887665 2222222 222234457789999999999
Q ss_pred cchHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCC---cEEecCCChHHHH
Q 015441 140 GTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNA---RLVANPGCYPTSI 215 (406)
Q Consensus 140 ~~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~---~iVanPgC~tta~ 215 (406)
+.++++++.+ ++|++|||+|++|| ++ ++ .||+||+|+++++++ ++|||||||||++
T Consensus 79 ~~s~~~a~~~~~aG~kvId~Sa~~r-d~--------~~-----------~~~vpevN~~~i~~~~~~~iIanp~C~tt~~ 138 (340)
T 2hjs_A 79 EVSRAHAERARAAGCSVIDLSGALE-PS--------VA-----------PPVMVSVNAERLASQAAPFLLSSPCAVAAEL 138 (340)
T ss_dssp HHHHHHHHHHHHTTCEEEETTCTTT-TT--------TS-----------CBCCHHHHGGGGGGSCSSCEEECCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEeCCCCC-CC--------CC-----------CeEEcCcCHHHHhcCcCCCEEEcCCHHHHHH
Confidence 9999999875 78999999999999 43 12 488889998888865 7999999999999
Q ss_pred HHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHH------------------HhcCcccccC--Ccccchhh-
Q 015441 216 QLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSE------------------IAEGIYSYGV--TRHRHVPE- 274 (406)
Q Consensus 216 ~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e------------------~~~ni~py~~--~~h~h~pE- 274 (406)
+++|+||+++ +++++++|+|+||+||+|++++++ ++.| ++.|+.||.. ..|+|.||
T Consensus 139 ~~~l~pL~~~--~~i~~~~v~t~~~~SgaG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~niip~~~~~~~~gh~~Ee 215 (340)
T 2hjs_A 139 CEVLAPLLAT--LDCRQLNLTACLSVSSLGREGVKE-LARQTAELLNARPLEPRLFDRQIAFNLLAQVGAVDAEGHSAIE 215 (340)
T ss_dssp HHHHHHHTTT--CCEEEEEEEEEECGGGGCHHHHHH-HHHHHHHHHTTCCCCCSSSSSCCTTCCBSSSSCBCTTSCBHHH
T ss_pred HHHHHHHHHh--cCcceEEEEEecccCCCCccccHh-HHHHHHHHhccCCccccccchhhccCeeccccCcccCCccHHH
Confidence 9999999998 467899999999999999998887 3433 3678999987 68999999
Q ss_pred --hhhhhccccC-CCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCccccc-cccCC
Q 015441 275 --IEQGLTGFAS-SKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTH-NVRGS 350 (406)
Q Consensus 275 --i~~~l~~i~~-~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~~-~v~g~ 350 (406)
+++.+.++++ ...+|+|||+|||++|||++++|++|+++++.|||+++|+++ |||++.+.+.+|+|+ ++.|+
T Consensus 216 ~k~~~~~~kil~~~~~~v~~~~~rVP~~~g~~~~~~~~l~~~~t~eei~~~~~~~----~~V~v~~~~~~p~~~~~v~g~ 291 (340)
T 2hjs_A 216 RRIFAEVQALLGERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDAT----KGIEWVGEGDYPTVVGDALGQ 291 (340)
T ss_dssp HHHHHHHHHHTGGGBCCEEEEEEECSCSSCEEEEEEEEESSCCCHHHHHHHHHHS----TTEEECCTTCCCCCCCCCTTS
T ss_pred HHHHHHHHHHhCCCCCcEEEEeEEcCcCceEEEEEEEEECCCCCHHHHHHHHhcC----CCcEEeCCCCCCccHHHcCCC
Confidence 9999988875 567899999999999999999999999999999999999974 999999876799999 99999
Q ss_pred CcEEEEEEEeC--cCCeEEEEEEehhhhHhHHHHHHHHHHHHhCC
Q 015441 351 NYCLMNVFPDR--IPGRAIIISVIDNLVKGASGQALQNLNIMLGF 393 (406)
Q Consensus 351 n~~~v~~~~~~--~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~g~ 393 (406)
|.|+|||++++ .++++.+|+++|||+||||+|||||||+|+|.
T Consensus 292 ~~~~vgr~r~~~~~~~~l~~~~~~DNl~kGAA~~avq~~~l~~~~ 336 (340)
T 2hjs_A 292 DETYVGRVRAGQADPCQVNLWIVSDNVRKGAALNAVLLGELLIKH 336 (340)
T ss_dssp SCEEEEEEEECSSCTTEEEEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_pred CEEEEEEEEecCCCCCEEEEEEEechHHHHHHHHHHHHHHHHHHh
Confidence 99999999987 56899999999999999999999999999873
|
| >2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-67 Score=522.88 Aligned_cols=296 Identities=24% Similarity=0.314 Sum_probs=254.2
Q ss_pred cEEEEECcccHHHHHHHHHHH--cCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 64 VRIGLLGASGYTGAEIVRLLA--NHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~--~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
+||+|+||||++|++|+|+|. +||..+++.+.++++.|+++.. .+.++. +...++++| ++|+||+|+|++.
T Consensus 1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~~s~~~~g~~l~~-----~g~~i~-v~~~~~~~~-~~DvV~~a~g~~~ 73 (331)
T 2yv3_A 1 MRVAVVGATGAVGREILKVLEARNFPLSELRLYASPRSAGVRLAF-----RGEEIP-VEPLPEGPL-PVDLVLASAGGGI 73 (331)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCCEEEECGGGSSCEEEE-----TTEEEE-EEECCSSCC-CCSEEEECSHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEeeccccCCCEEEE-----cCceEE-EEeCChhhc-CCCEEEECCCccc
Confidence 489999999999999999998 8999999988888888887662 232332 222234468 9999999999999
Q ss_pred hHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccC-CcEEecCCChHHHHHHHH
Q 015441 142 TQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKN-ARLVANPGCYPTSIQLPL 219 (406)
Q Consensus 142 s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~-~~iVanPgC~tta~~l~L 219 (406)
++++++.+ ++|++|||+|++|||+++ +.|++||+|+++|++ +++|||||||||+++++|
T Consensus 74 s~~~a~~~~~~G~~vId~s~~~R~~~~-------------------~~~~vpevN~~~i~~~~~iIanp~C~tt~~~~~l 134 (331)
T 2yv3_A 74 SRAKALVWAEGGALVVDNSSAWRYEPW-------------------VPLVVPEVNREKIFQHRGIIANPNCTTAILAMAL 134 (331)
T ss_dssp HHHHHHHHHHTTCEEEECSSSSTTCTT-------------------SCBCCTTSCGGGGGGCSSEEECCCHHHHHHHHHH
T ss_pred hHHHHHHHHHCCCEEEECCCccccCCC-------------------CCEEEcCcCHHHhcCCCCEEECCCHHHHHHHHHH
Confidence 99999875 789999999999999862 248888999999887 689999999999999999
Q ss_pred HHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHH------------------hcCccccc--CCcccchhh---hh
Q 015441 220 VPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEI------------------AEGIYSYG--VTRHRHVPE---IE 276 (406)
Q Consensus 220 ~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~------------------~~ni~py~--~~~h~h~pE---i~ 276 (406)
+||+++ +++++++|+|+||+||+|++++++ ++.|+ +.|+.|+. ...|+|.|| |+
T Consensus 135 ~pL~~~--~~I~~~~vtt~~~~SgaG~~~~~~-l~~q~~~~~~~~~~~~~~~~~~~a~niiP~~~~~~~~~ht~e~~~i~ 211 (331)
T 2yv3_A 135 WPLHRA--FQAKRVIVATYQAASGAGAKAMEE-LLTETHRFLHGEAPKAEAFAHPLPFNVIPHIDAFQENGYTREEMKVV 211 (331)
T ss_dssp HHHHHH--HCEEEEEEEEEBCGGGGCHHHHHH-HHHHHHHHHTSSCCCCCSSSSCCTTCCBSCCSCBCTTSCBHHHHHHH
T ss_pred HHHHHh--CCceEEEEEEEeecccCCcchhHH-HHHHHHhhhcCccccccccchhhhcCcccccCccccCCCcHHHHHHH
Confidence 999998 467899999999999999999986 44433 24555654 236889999 98
Q ss_pred hhhccccC-CCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCC---CCccccccccCCCc
Q 015441 277 QGLTGFAS-SKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEK---GVVPRTHNVRGSNY 352 (406)
Q Consensus 277 ~~l~~i~~-~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~---~~~P~~~~v~g~n~ 352 (406)
+++.++++ +.++|+|||+|||++|||+.++|++++++++.+|++++|+++ +||++.++ +.+|+|+++.|+|+
T Consensus 212 ~e~~kil~~~~l~v~~~~~rVP~~~g~~~~~~~~l~~~~t~eei~~~~~~~----~~v~v~~~~~~~~~p~~~~~~g~~~ 287 (331)
T 2yv3_A 212 WETHKIFGDDTIRISATAVRVPTLRAHAEAVSVEFARPVTPEAAREVLKEA----PGVEVVDEPEAKRYPMPLTASGKWD 287 (331)
T ss_dssp HHHHHHTTCTTCEEEEECCBCSCSSEEEEEEEEEESSCCCHHHHHHHHTTS----TTCCBCCBTTTTBCCCHHHHTTCSS
T ss_pred HHHHHHhCCCCceEEEEEEEeccCceEEEEEEEEECCCCCHHHHHHHHHcC----CCeEEEeCCCcCCCCChhhccCCce
Confidence 88988874 778999999999999999999999999999999999999874 99999864 46999999999999
Q ss_pred EEEEEEEeC--cCCeEEEEEEehhhhHhHHHHHHHHHHHHhC
Q 015441 353 CLMNVFPDR--IPGRAIIISVIDNLVKGASGQALQNLNIMLG 392 (406)
Q Consensus 353 ~~v~~~~~~--~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~g 392 (406)
|+|||++.+ .++++.+|+++|||+||||||||||||+|++
T Consensus 288 ~~igr~~~d~~~~~~l~~~~~~DNl~kGAAg~AVq~~nl~~~ 329 (331)
T 2yv3_A 288 VEVGRIRKSLAFENGLDFFVVGDQLLKGAALNAVQIAEEWLK 329 (331)
T ss_dssp EEEEEEEECSSSTTEEEEEEEEETTHHHHTTHHHHHHHHHC-
T ss_pred EEEEEEEECCCCCCEEEEEEEechHHHHHHHHHHHHHHHHhh
Confidence 999988765 5689999999999999999999999999986
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-62 Score=494.66 Aligned_cols=298 Identities=15% Similarity=0.188 Sum_probs=252.1
Q ss_pred ccEEEEECcccHHHHHHHH-HHHcC--CCceEEEEeccCcCCccccccccCccccCCCccccc-CcccCCCCCEEEEcCC
Q 015441 63 QVRIGLLGASGYTGAEIVR-LLANH--PYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAV-KDADFSNVDAVFCCLP 138 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlr-lL~~h--p~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~-~~~~~~~vDvVF~al~ 138 (406)
|+||||+||||++|++|+| +|.+| |.+++..+.++ ++|+++.. +.+.++. +... ++++|.++|+||+|+|
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~-s~G~~v~~----~~g~~i~-~~~~~~~~~~~~~DvVf~a~g 74 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTS-QLGQAAPS----FGGTTGT-LQDAFDLEALKALDIIVTCQG 74 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS-STTSBCCG----GGTCCCB-CEETTCHHHHHTCSEEEECSC
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeC-CCCCCccc----cCCCceE-EEecCChHHhcCCCEEEECCC
Confidence 4799999999999999999 78776 56889888876 68987642 3333443 2233 2345778999999999
Q ss_pred CcchHHHHhhC-CCCC--EEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCC-----cEEecCCC
Q 015441 139 HGTTQEIIKGL-PKSL--KIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNA-----RLVANPGC 210 (406)
Q Consensus 139 ~~~s~~~~~~l-~~G~--~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~-----~iVanPgC 210 (406)
++.++++++.+ ++|+ +|||+|++|||++ + +.|++||+|++++++. ++|+||||
T Consensus 75 ~~~s~~~a~~~~~~G~k~vVID~ss~~R~~~--------~-----------~~~~vpevN~~~i~~~~~~g~~~Ianp~C 135 (367)
T 1t4b_A 75 GDYTNEIYPKLRESGWQGYWIDAASSLRMKD--------D-----------AIIILDPVNQDVITDGLNNGIRTFVGGNC 135 (367)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEECSSTTTTCT--------T-----------EEEECHHHHHHHHHHHHHTTCCEEEECCH
T ss_pred chhHHHHHHHHHHCCCCEEEEcCChhhccCC--------C-----------CcEEeCCcCHHHHhhhhhcCCCEEEeCCH
Confidence 99999999876 7786 8999999999987 2 2467777777777643 79999999
Q ss_pred hHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcc--------------------------------------
Q 015441 211 YPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEAN-------------------------------------- 252 (406)
Q Consensus 211 ~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~-------------------------------------- 252 (406)
|||+++++|+||++.+ ++++++|+||||+||+|+++++++
T Consensus 136 ttt~~~~al~pL~~~~--~I~~~~vtt~~a~SGaG~~~~~el~~~~~~l~~~~~~~~~~~~~~ild~~r~~~~~~~~~~~ 213 (367)
T 1t4b_A 136 TVSLMLMSLGGLFAND--LVDWVSVATYQAASGGGARHMRELLTQMGHLYGHVADELATPSSAILDIERKVTTLTRSGEL 213 (367)
T ss_dssp HHHHHHHHHHHHHHTT--CEEEEEEEEEBCGGGTCHHHHHHHHHHHHHHHHHTHHHHTCTTCCHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHcC--CCcEEEEEEEeccccccccchHHHHHHHhhhhccccccccccccchhhhhhccccccccccC
Confidence 9999999999999984 678999999999999999876531
Q ss_pred ---cH-HHHhcCcccccCC--cccchhh---hhhhhccccC--CCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHH
Q 015441 253 ---LY-SEIAEGIYSYGVT--RHRHVPE---IEQGLTGFAS--SKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQ 321 (406)
Q Consensus 253 ---~~-~e~~~ni~py~~~--~h~h~pE---i~~~l~~i~~--~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~ 321 (406)
+| .+++.|++||..+ .|+|.|| +++.+.++++ +.++|+|||||||++|||++++|++++++++.+||++
T Consensus 214 ~~~~f~~~~a~NiiP~~~~~~~~~~t~EE~k~~~e~~kil~~~~~~~v~~t~vrVPv~~g~~~~v~v~l~~~~t~eei~~ 293 (367)
T 1t4b_A 214 PVDNFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILNTSSVIPVDGLCVRVGALRCHSQAFTIKLKKDVSIPTVEE 293 (367)
T ss_dssp CCTTTSSCCTTCEESCCSCBCTTSCBHHHHHHHHHHHHHHTCSSCCCEEEECCEESCSSEEEEEEEEEESSCCCHHHHHH
T ss_pred cccccchhhhCceEEEecCccccCccHHHHHHHHHHHHHhCcCCCceEEEEEEEcCccceEEEEEEEEECCCCCHHHHHH
Confidence 11 3457899999875 7999999 8888888886 6789999999999999999999999999999999999
Q ss_pred HHHHHcCCCCcEEecCCC-----CccccccccCCCcEEEEEEEeC--cCCeEEEEEEehhhhHhHHHHHHHHHHHH
Q 015441 322 QLKISYEHEEFVKLLEKG-----VVPRTHNVRGSNYCLMNVFPDR--IPGRAIIISVIDNLVKGASGQALQNLNIM 390 (406)
Q Consensus 322 ~l~~~y~~~~fV~v~~~~-----~~P~~~~v~g~n~~~v~~~~~~--~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~ 390 (406)
+|++++ +||++.+++ .+|+|+++.|+|.|+|||++.+ .++++.+|+++|||+||||||....++++
T Consensus 294 ~l~~~~---~~V~v~~~~~~~~~~~p~~~~v~g~~~~~Vgrir~d~~~~~~l~~~~~~DNL~kGAAg~~~~~~~~~ 366 (367)
T 1t4b_A 294 LLAAHN---PWAKVVPNDREITMRELTPAAVTGTLTTPVGRLRKLNMGPEFLSAFTVGDQLLWGAAEPLRRMLRQL 366 (367)
T ss_dssp HHHHHC---TTCCBCCSCHHHHHHHSSHHHHTTSSCCCEEEEEECTTCTTEEEEEEEEETTCCCCCHHHHHHHHHH
T ss_pred HHHhcC---CCEEEecCCcccccCCCcceeeCCCCeEEEEEEEEcCCCCCEEEEEEEccchhhchhHHHHHHHHhh
Confidence 999985 899998863 4899999999999999988765 46899999999999999999999998876
|
| >1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-42 Score=341.01 Aligned_cols=289 Identities=13% Similarity=0.138 Sum_probs=221.2
Q ss_pred ccEEEEECcccHHHHHHHHHHHcC--CCceEEEEe-------------ccCcCCccccccc---cC---ccccCCCcccc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANH--PYFGIKLMT-------------ADRKAGQSIGSVF---PH---LISQDLPTMVA 121 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~h--p~~elv~l~-------------s~~~~G~~i~~v~---p~---l~~~~~~~~~~ 121 (406)
|+||||+|+ |++|++++|+|.+| |++|+++++ +++..|+....++ +. +.+..+..+..
T Consensus 1 ~ikVgInG~-G~IGr~llR~l~~~~~p~~eivaInd~~~~~~~a~ll~sds~~G~~~~~v~~~~~~~l~v~g~~i~v~~~ 79 (337)
T 1rm4_O 1 KLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSD 79 (337)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHTCSSCSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECC
T ss_pred CeEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEEEcCCCHHHHHHHhcccccCCCccceeEEecCCeEEECCeEEEEEec
Confidence 479999998 99999999999998 999999998 6677787666555 42 33433333333
Q ss_pred cCcc--cCC--CCCEEEEcCCCcchHHHHhh-CCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccch
Q 015441 122 VKDA--DFS--NVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISR 196 (406)
Q Consensus 122 ~~~~--~~~--~vDvVF~al~~~~s~~~~~~-l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~ 196 (406)
.++. +|. ++|+||+|+|++.+++.++. +++|+++||+|++|| ++ .|.. +|| +|+
T Consensus 80 ~dp~~i~w~~~gvDiV~eatg~~~s~e~a~~~l~~Gak~V~iSap~r-~d---------~p~~--------V~G---VN~ 138 (337)
T 1rm4_O 80 RNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGK-GD---------IPTY--------VVG---VNE 138 (337)
T ss_dssp SCGGGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCB-SS---------CCBC--------CTT---TTG
T ss_pred CChhhCcccccCCCEEEECCCchhhHHHHHHHHHcCCEEEEECCccc-CC---------CCeE--------eec---CCH
Confidence 2333 355 89999999999999999986 488999999999999 43 3444 444 345
Q ss_pred hhcc-CCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccH-----HHHhcCcccccCCcc-
Q 015441 197 EDIK-NARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLY-----SEIAEGIYSYGVTRH- 269 (406)
Q Consensus 197 ~~i~-~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~-----~e~~~ni~py~~~~h- 269 (406)
++++ ++++|||||||||+++++|+||+++ ++|+++.|+|+|++||+ |+..+.+|+ +++++|++||+.+.|
T Consensus 139 ~~~~~~~~IIsNasCtTn~lap~lk~L~~~--fgI~~~~mtTvha~Tga-q~l~d~~~~~~r~~r~~a~NiiP~~tgaak 215 (337)
T 1rm4_O 139 EGYTHADTIISNASCTTNCLAPFVKVLDQK--FGIIKGTMTTTHSYTGD-QRLLDASHRDLRRARAACLNIVPTSTGAAK 215 (337)
T ss_dssp GGCCTTCSEEECCCHHHHHHHHHHHHHHHH--HCEEEEEEEEEEECCTT-SCSSSCCCSSTTTTSCTTTCCEEECCCHHH
T ss_pred HHhCCCCeEEECCChHHHHHHHHHHHHHHh--cCeeEEEEEEEEecCCc-cchhhcchhhhccchhhhcCcccccchhhH
Confidence 5666 4789999999999999999999998 68999999999999999 888888765 577899999999988
Q ss_pred ---cchhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCC--CcEEecCCCCcccc
Q 015441 270 ---RHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHE--EFVKLLEKGVVPRT 344 (406)
Q Consensus 270 ---~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~--~fV~v~~~~~~P~~ 344 (406)
+|+||+++ +++++|+|||+++||+.+++++++++++.|||+++|+++|++. -.+.+.+++ .-+
T Consensus 216 av~kvlPel~g----------kl~~~a~RVP~~~gs~~dl~~~l~k~~t~eei~~~lk~a~~~~lkgil~y~~~~-~vs- 283 (337)
T 1rm4_O 216 AVALVLPNLKG----------KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEP-LVS- 283 (337)
T ss_dssp HHHHHCGGGTT----------TEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHTTTTTTTEEEECSC-CCG-
T ss_pred HHHhhhhhhcC----------cEEEEEEEecCCCEEEEEEEEEECCCCCHHHHHHHHHHHhhCCcCceecCcCCC-eee-
Confidence 77888866 5899999999999999999999999999999999999998653 245555432 111
Q ss_pred ccccCCCcEEE-----EEEEeCcCCeEEEEEEehhhhHhHHHHHHHHHHHHh
Q 015441 345 HNVRGSNYCLM-----NVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIML 391 (406)
Q Consensus 345 ~~v~g~n~~~v-----~~~~~~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~ 391 (406)
.+-.|..+-.| ++.. ..+-+-+++--|| -.|=+-+-+..+..|.
T Consensus 284 ~d~~~~~~s~i~d~~~~~~~--~~~~~k~~~wydn-e~gys~r~~d~~~~~~ 332 (337)
T 1rm4_O 284 IDFRCTDVSSTIDSSLTMVM--GDDMVKVIAWYDN-EWGYSQRVVDLADIVA 332 (337)
T ss_dssp GGGTTCCSSEEEEGGGCEEE--TTTEEEEEEEECT-THHHHHHHHHHHHHHH
T ss_pred cccCCCCcccccchhcccee--cCCEEEEEEEECC-CccchhhHHHHHHHHh
Confidence 12233322111 0111 1233458888999 5677777777777663
|
| >1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-42 Score=343.25 Aligned_cols=290 Identities=15% Similarity=0.144 Sum_probs=220.4
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCc-----cccccccCcccc------CC-------CcccccCc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQ-----SIGSVFPHLISQ------DL-------PTMVAVKD 124 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~-----~i~~v~p~l~~~------~~-------~~~~~~~~ 124 (406)
|+||||+| +||+|++++|+|.+||++|++++++....+. +++++|++|.+. .+ ..+...++
T Consensus 1 ~ikVgI~G-~G~iG~~l~R~l~~~~~veiv~i~~~~~~~~~a~l~~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~dp 79 (330)
T 1gad_O 1 TIKVGING-FGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDP 79 (330)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTCSSEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred CeEEEEEC-cCHHHHHHHHHHHcCCCeEEEEEcCCCChhHHhHhhcccccCCCCCCeEEEcCCEEEECCEEEEEEEcCCh
Confidence 57999999 6999999999999999999999998766665 788999988541 11 11222223
Q ss_pred cc--C--CCCCEEEEcCCCcchHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhc
Q 015441 125 AD--F--SNVDAVFCCLPHGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDI 199 (406)
Q Consensus 125 ~~--~--~~vDvVF~al~~~~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i 199 (406)
+. | .++|+||+|+|++.+++.++.+ ++|+++||+|++| ++ +.| .++|| +|++++
T Consensus 80 ~~i~w~~~~vDvVf~atg~~~s~e~a~~~l~~GakvVdlSa~~--~~--------~~p--------~~V~G---vN~~~~ 138 (330)
T 1gad_O 80 ANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPS--KD--------NTP--------MFVKG---ANFDKY 138 (330)
T ss_dssp GGGCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCC--SS--------SCC--------BCCTT---TTGGGC
T ss_pred hhCccccccCCEEEECCCccccHHHHHHHHHCCCEEEEECCCC--CC--------CCC--------eEeec---CCHHHh
Confidence 32 3 4899999999999999999874 8899999999999 33 233 34666 566778
Q ss_pred cCCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhccc-----H-HHHhcCcccccCCcccchh
Q 015441 200 KNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANL-----Y-SEIAEGIYSYGVTRHRHVP 273 (406)
Q Consensus 200 ~~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~-----~-~e~~~ni~py~~~~h~h~p 273 (406)
+++++|||||||||+++++|+||+++ ++++++.|+|+|++||+ ++++++.+ + +++++|++||+. +|.+
T Consensus 139 ~~~~iIsNpsCtt~~lap~lkpL~~~--~gI~~~~~ttvha~Tg~-q~~vd~~~~~~~~~~r~~~~NiiP~~t---g~a~ 212 (330)
T 1gad_O 139 AGQDIVSNASCTTNCLAPLAKVINDN--FGIIEGLMTTVHATTAT-QKTVDGPSHKDWRGGRGASQNIIPSST---GAAK 212 (330)
T ss_dssp CSCSEEECCCHHHHHHHHHHHHHHHH--HCEEEEEEEEEECCCTT-SBSSSCCCSSCGGGGSBTTTCCEEEEC---CTTT
T ss_pred CCCCEEEcCChHHHHHHHHHHHHHHh--cCeeEEEEEEEEecccc-cccccccccCCCccccchhhCeEEcCC---Ccch
Confidence 87899999999999999999999998 57899999999999999 88887654 1 267889999985 4678
Q ss_pred hhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCc---EEecCCCCccccccccCC
Q 015441 274 EIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEF---VKLLEKGVVPRTHNVRGS 350 (406)
Q Consensus 274 Ei~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~f---V~v~~~~~~P~~~~v~g~ 350 (406)
|+++.+..+.+ +++|+|+|||++|||+.+++++|+++++.|||+++|+++|++ ++ +.+.+++ .-. .+-.|.
T Consensus 213 ei~kvlpel~g---kl~~~a~rVP~~~g~~~~l~~~l~k~~t~eei~~~~k~a~~~-~l~gil~y~~~~-~vs-~d~~~~ 286 (330)
T 1gad_O 213 AVGKVLPELNG---KLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEG-EMKGVLGYTEDD-VVS-TDFNGE 286 (330)
T ss_dssp THHHHSGGGTT---SEEEEEEECSCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHT-TTTTTEEEECSC-CCG-GGGTTC
T ss_pred hHHHHHHHhcC---cEEEEEEEeccccEEEEEEEEEECCCCCHHHHHHHHHHHhcC-CCCCEEeeECCc-eee-eeECCC
Confidence 88887765543 699999999999999999999999999999999999999864 43 4444332 111 122333
Q ss_pred CcEEEEEEEeC------cCCeEEEEEEehhhhHhHHHHHHHHHHHH
Q 015441 351 NYCLMNVFPDR------IPGRAIIISVIDNLVKGASGQALQNLNIM 390 (406)
Q Consensus 351 n~~~v~~~~~~------~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~ 390 (406)
.+-.| .|. ..+-+-+++--|| -+|=+-+-+..+..|
T Consensus 287 ~~s~~---~d~~~~~~~~~~~~k~~~wydn-e~gys~r~~d~~~~~ 328 (330)
T 1gad_O 287 VCTSV---FDAKAGIALNDNFVKLVSWYDN-ETGYSNKVLDLIAHI 328 (330)
T ss_dssp CSSEE---EETTTCEEEETTEEEEEEEECT-THHHHHHHHHHHHHT
T ss_pred CcceE---EecccCeEecCCEEEEEEEECC-CchhhhHHHHHHHHh
Confidence 22111 121 1233457788899 556666666666554
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-40 Score=327.17 Aligned_cols=291 Identities=13% Similarity=0.123 Sum_probs=217.5
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCceEEEEec-cCcCC---c--cccccccCcccc-------------CCCcccc
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA-DRKAG---Q--SIGSVFPHLISQ-------------DLPTMVA 121 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s-~~~~G---~--~i~~v~p~l~~~-------------~~~~~~~ 121 (406)
.+|+||||+|+ |++|++|+|+|.+||++|++++++ ..+.+ . +++++||+|.+. ++..+..
T Consensus 15 ~~~ikVgI~G~-G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~ 93 (354)
T 3cps_A 15 YFQGTLGINGF-GRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQA 93 (354)
T ss_dssp ---CEEEEECC-SHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECC
T ss_pred CcceEEEEECC-CHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEec
Confidence 44689999998 999999999999999999999998 55554 1 477788887541 2222222
Q ss_pred cCcc--cC--CCCCEEEEcCCCcchHHHHhhC-CCCC--EEEEcCCcccCCCccchhhhcCCCCCCccchhhhhcccccc
Q 015441 122 VKDA--DF--SNVDAVFCCLPHGTTQEIIKGL-PKSL--KIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEI 194 (406)
Q Consensus 122 ~~~~--~~--~~vDvVF~al~~~~s~~~~~~l-~~G~--~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~ 194 (406)
.+++ .| .++|+||+|+|++.+++.++++ ++|+ +|||++++ + +.|. ++|| +
T Consensus 94 ~dp~~i~w~~~~vDvV~eatg~~~s~e~a~~~l~~GakkvVId~pad----d--------~~p~--------~V~G---V 150 (354)
T 3cps_A 94 KDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIISAPPK----D--------NVPM--------YVMG---V 150 (354)
T ss_dssp SCGGGCCHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSCCS----S--------CCCB--------CCTT---T
T ss_pred CChHHCCcccCCCCEEEECCCchhhHHHHHHHHHcCCcEEEEeCCCC----C--------CCCE--------EEec---c
Confidence 2333 34 5899999999999999999874 7888 89999985 2 2333 4555 6
Q ss_pred chhhccC--CcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhccc--------HHHHhcCcccc
Q 015441 195 SREDIKN--ARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANL--------YSEIAEGIYSY 264 (406)
Q Consensus 195 ~~~~i~~--~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~--------~~e~~~ni~py 264 (406)
|+++++. .+||||||||||+++++|+||+++ ++|++..|+|+|++||+ ++++++++ .+++++|++||
T Consensus 151 N~~~~~~~~~~IISNpsCtTn~lap~lkpL~~~--~gI~~g~mtTvha~Tg~-q~~vd~~~~~~k~~r~~r~aa~NiiP~ 227 (354)
T 3cps_A 151 NNTEYDPSKFNVISNASCTTNCLAPLAKIINDK--FGIVEGLMTTVHSLTAN-QLTVDGPSKGGKDWRAGRCAGNNIIPA 227 (354)
T ss_dssp TGGGCCTTTCSEEECCCHHHHHHHHHHHHHHHH--TCEEEEEEEEEEECCTT-SCSSSCCCCC--CCGGGSCTTSCCEEE
T ss_pred CHHHhCcCCCcEEECCCcHHHHHHHHHHHHHHh--CCeeEEEEEEEeccccc-chhhhccchhccccccccchhccEEec
Confidence 7777775 789999999999999999999998 68899999999999999 88888765 34678899999
Q ss_pred cCCcccchhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCc---EEecCCCCc
Q 015441 265 GVTRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEF---VKLLEKGVV 341 (406)
Q Consensus 265 ~~~~h~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~f---V~v~~~~~~ 341 (406)
+.+ |.+|+++.|..+.+ +++|+|+|||++|||+.+++++|+++++.|||+++|+++|++ ++ +.+.+++ .
T Consensus 228 ~tG---~akei~kvlp~l~g---kl~~~a~rVP~~~gs~~dl~~~l~k~~t~eeI~~~~k~a~~~-~lkgil~y~~~~-~ 299 (354)
T 3cps_A 228 STG---AAKAVGKVIPALNG---KLTGMAIRVPTPDVSVVDLTCKLAKPASIEEIYQAVKEASNG-PMKGIMGYTSDD-V 299 (354)
T ss_dssp ECC---HHHHHHHHSGGGTT---TEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHT-TTTTTEEEECSC-C
T ss_pred CcC---HHHHHHHHHHhcCC---cEEEEEEEeccCCEEEEEEEEEECCCCCHHHHHHHHHHHhhC-CCCCccCccCCC-e
Confidence 876 57888887755433 499999999999999999999999999999999999999874 43 4444332 1
Q ss_pred cccccccCCCc-EEE----EEEEeCcCCeEEEEEEehhhhHhHHHHHHHHHHHH
Q 015441 342 PRTHNVRGSNY-CLM----NVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIM 390 (406)
Q Consensus 342 P~~~~v~g~n~-~~v----~~~~~~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~ 390 (406)
-. .+-.|..+ +-+ ++..+ .+-+-+++--|| -+|=+-+-|..+..|
T Consensus 300 vs-~d~~~~~~s~~~d~~~~~~~~--~~~~k~~~wydn-e~gys~r~~d~~~~~ 349 (354)
T 3cps_A 300 VS-TDFIGCKYSSIFDKNACIALN--DSFVKLISWYDN-ESGYSNRLVDLAVYV 349 (354)
T ss_dssp CG-GGGTTCCCSEEEEGGGCEEEE--TTEEEEEEEECT-THHHHHHHHHHHHHH
T ss_pred ee-EEEcCCCcceEEecccCeEec--CCEEEEEEEECC-CcchHhHHHHHHHHH
Confidence 11 12233322 111 11111 234457888999 567777777777766
|
| >1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-40 Score=325.38 Aligned_cols=287 Identities=13% Similarity=0.147 Sum_probs=211.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcC--CCceEEEEeccCc---CCc--cccccccCcc-------------ccCCCcccccC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANH--PYFGIKLMTADRK---AGQ--SIGSVFPHLI-------------SQDLPTMVAVK 123 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~h--p~~elv~l~s~~~---~G~--~i~~v~p~l~-------------~~~~~~~~~~~ 123 (406)
+||||+|+ ||+|++|+|+|.+| |++|++++++..+ .+. +++++|++|. +.++......+
T Consensus 1 ~kVgI~G~-G~iGr~llR~l~~~~~p~~eivain~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~d 79 (332)
T 1hdg_O 1 ARVAINGF-GRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPD 79 (332)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSS
T ss_pred CEEEEEcc-CHHHHHHHHHHHhCCCCCeEEEEEEcCCChHHhhhhccCcCcCCCcCCcEEEcCCEEEECCeEEEEEecCC
Confidence 58999998 99999999999999 9999999988431 111 2345555542 22333222223
Q ss_pred ccc--CC--CCCEEEEcCCCcchHHHHhhC-CCCC--EEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccch
Q 015441 124 DAD--FS--NVDAVFCCLPHGTTQEIIKGL-PKSL--KIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISR 196 (406)
Q Consensus 124 ~~~--~~--~vDvVF~al~~~~s~~~~~~l-~~G~--~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~ 196 (406)
++. |. ++|+||+|+|++.+++.++.+ ++|+ +|||++++ + .| + +.+||+|+
T Consensus 80 p~~l~w~~~~vDvV~~atg~~~s~e~a~~~l~aGakkvVId~~a~----d---------~p----~------~~V~eVN~ 136 (332)
T 1hdg_O 80 PSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAPAK----G---------ED----I------TVVIGCNE 136 (332)
T ss_dssp GGGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCB----S---------CS----E------ECCTTTTG
T ss_pred hHHCcccccCCCEEEECCccchhHHHHHHHHHcCCcEEEEeCCCC----C---------CC----c------eEEeccCH
Confidence 333 44 899999999999999999874 7888 99999986 2 22 1 34456788
Q ss_pred hhcc-CCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcc----cH-HHHhcCcccccCCccc
Q 015441 197 EDIK-NARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEAN----LY-SEIAEGIYSYGVTRHR 270 (406)
Q Consensus 197 ~~i~-~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~----~~-~e~~~ni~py~~~~h~ 270 (406)
++++ ++++|||||||||+++++|+||+++ ++|+++.|+|+|++||+++ ..|.+ ++ +++++|++||. |+
T Consensus 137 ~~i~~~~~iIsNpsCttn~lap~lkpL~~~--~gI~~~~~ttvha~Sg~q~-~~d~~~~~~~~~r~~a~NiiP~~---tg 210 (332)
T 1hdg_O 137 DQLKPEHTIISCASCTTNSIAPIVKVLHEK--FGIVSGMLTTVHSYTNDQR-VLDLPHKDLRRARAAAVNIIPTT---TG 210 (332)
T ss_dssp GGCCTTCCEEECCCHHHHHHHHHHHHHHHH--HCEEEEEEEEEEECCTTSB-SSSCCCSSTTTTSBGGGCCEEEC---CT
T ss_pred HHhCCCCcEEECCccHHHHHHHHHHHHHHh--cCeeEeEEEEEEeccchhh-hhcCcccccccchhHhhCccccc---CC
Confidence 8888 5899999999999999999999998 5789999999999999954 44532 22 36789999997 77
Q ss_pred chhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCc---EEecCCCCccccccc
Q 015441 271 HVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEF---VKLLEKGVVPRTHNV 347 (406)
Q Consensus 271 h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~f---V~v~~~~~~P~~~~v 347 (406)
|.+|+++.|..+.+ +++|+|+|||++|||+.+++++|+++++.|||+++|+++|++ ++ +.+.+++ .-+ .+-
T Consensus 211 ~a~ei~kvLp~l~g---kl~~~a~rVP~~~g~l~~l~~~l~k~~t~eei~~~lk~a~~~-~l~gil~y~~~~-~vs-~d~ 284 (332)
T 1hdg_O 211 AAKAVALVVPEVKG---KLDGMAIRVPTPDGSITDLTVLVEKETTVEEVNAVMKEATEG-RLKGIIGYNDEP-IVS-SDI 284 (332)
T ss_dssp HHHHHHHHCGGGTT---TEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHTT-TTTTTEEEECSC-CCG-GGG
T ss_pred cccchhhhCccccC---CEEEEeEEccccCcEEEEEEEEECCCCCHHHHHHHHHHHhhc-ccCCcccccCCC-eee-eee
Confidence 89999888765533 699999999999999999999999999999999999999864 54 4444332 111 122
Q ss_pred cCCCcEEEEEEEeC------cCCeEEEEEEehhhhHhHHHHHHHHHHHH
Q 015441 348 RGSNYCLMNVFPDR------IPGRAIIISVIDNLVKGASGQALQNLNIM 390 (406)
Q Consensus 348 ~g~n~~~v~~~~~~------~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~ 390 (406)
.|..+-.| .|. ..+-+-+++--|| -+|=+-+-+..+..|
T Consensus 285 ~~~~~s~~---~d~~~~~~~~~~~~k~~~wydn-e~gys~r~~d~~~~~ 329 (332)
T 1hdg_O 285 IGTTFSGI---FDATITNVIGGKLVKVASWYDN-EYGYSNRVVDTLELL 329 (332)
T ss_dssp TTCCCSEE---EETTTCEEETTTEEEEEEEECT-THHHHHHHHHHHHHG
T ss_pred CCCCccce---eccccCeEecCCEEEEEEEeCC-CccchhHHHHHHHHH
Confidence 33322111 121 1234457888899 567777777776665
|
| >3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-39 Score=324.23 Aligned_cols=290 Identities=15% Similarity=0.152 Sum_probs=211.7
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC---C--ccccccccCc-------------cccCCCcccccCc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA---G--QSIGSVFPHL-------------ISQDLPTMVAVKD 124 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~---G--~~i~~v~p~l-------------~~~~~~~~~~~~~ 124 (406)
|+||||+|+ ||+|++|+|+|.+||+++++++++.... + .+++++|++| .+.++......++
T Consensus 1 mikVgI~G~-G~iGr~l~R~l~~~~~veivain~~~~~~~~~~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~dp 79 (334)
T 3cmc_O 1 AVKVGINGF-GRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDP 79 (334)
T ss_dssp CEEEEEESC-SHHHHHHHHHHTTCTTEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred CeEEEEECC-CHHHHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHhccCCcCCCcCceEEEccCcEEECCEEEEEEecCCh
Confidence 589999998 9999999999999999999999985211 1 1234555554 2233332222233
Q ss_pred c--cCC--CCCEEEEcCCCcchHHHHhhC-CCCC--EEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchh
Q 015441 125 A--DFS--NVDAVFCCLPHGTTQEIIKGL-PKSL--KIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISRE 197 (406)
Q Consensus 125 ~--~~~--~vDvVF~al~~~~s~~~~~~l-~~G~--~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~ 197 (406)
+ .|. ++|+||+|+|++.+++.++.+ ++|+ +|||++++ + +.|. .+||+|++
T Consensus 80 ~~i~w~~~~vDvV~~atg~~~s~e~a~~~l~~Gak~vVId~pa~----d--------~~p~-----------~V~eVN~~ 136 (334)
T 3cmc_O 80 ENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAK----N--------EDIT-----------IVMGVNQD 136 (334)
T ss_dssp GGCCTGGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCB----S--------CSEE-----------CCTTTSGG
T ss_pred hhcCcccCccCEEEECCCchhhHHHHHHHHHCCCCEEEEeCCCc----c--------CCCE-----------eccccCHH
Confidence 3 344 899999999999999999874 7888 89999986 2 1333 34566777
Q ss_pred hccC--CcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhccc----H-HHHhcCcccccCCccc
Q 015441 198 DIKN--ARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANL----Y-SEIAEGIYSYGVTRHR 270 (406)
Q Consensus 198 ~i~~--~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~----~-~e~~~ni~py~~~~h~ 270 (406)
+++. +++|||||||||+++++|+||+++ ++|+++.|+|+|++||+++ ..+..| + +++++|++||. |.
T Consensus 137 ~i~~~~~~IIsNpsCttn~lap~lkpL~~~--~gI~~~~mtTvha~Sg~q~-~~d~~~~~~r~~r~~a~NiiP~~---tg 210 (334)
T 3cmc_O 137 KYDPKAHHVISNASCTTNCLAPFAKVLHEQ--FGIVRGMMTTVHSYTNDQR-ILDLPHKDLRRARAAAESIIPTT---TG 210 (334)
T ss_dssp GCCTTTCCEEECCCHHHHHHHHHHHHHHHH--HCEEEEEEEEEEECCTTSB-SSSCCCSSTTTTSBTTTCCEEEE---CS
T ss_pred HhCccCCeEEECCChHHHHHHHHHHHHHHh--cCceeeeEEEEEeccchhh-hccccccccccchhhhhCEEeec---cC
Confidence 7774 789999999999999999999998 6889999999999999954 455322 2 36778999997 55
Q ss_pred chhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCc---EEecCCCCccccccc
Q 015441 271 HVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEF---VKLLEKGVVPRTHNV 347 (406)
Q Consensus 271 h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~f---V~v~~~~~~P~~~~v 347 (406)
|.+|+++.|..+.+ +++|+|+|||++|||+.+++++|+++++.|||+++|+++|++ ++ +.+.+++ .-. .+-
T Consensus 211 ~a~ei~kvlp~l~g---kl~~~a~rVP~~~gs~~~l~~~l~k~~t~eei~~~lk~a~~~-~l~gil~y~~~~-~vs-~d~ 284 (334)
T 3cmc_O 211 AAKAVALVLPELKG---KLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEG-ELKGILAYSEEP-LVS-RDY 284 (334)
T ss_dssp HHHHHHHHCGGGTT---TEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHT-TTTTTEEEECSC-CCG-GGG
T ss_pred cccchhhhChhhcC---cEEEEEEEECCCCEEEEEEEEEECCCCCHHHHHHHHHHHhhC-ccCCcccCCCCC-Eee-eee
Confidence 78999887755433 699999999999999999999999999999999999999864 54 4444332 111 122
Q ss_pred cCCCc-EEEE----EEEeCcCCeEEEEEEehhhhHhHHHHHHHHHHHHh
Q 015441 348 RGSNY-CLMN----VFPDRIPGRAIIISVIDNLVKGASGQALQNLNIML 391 (406)
Q Consensus 348 ~g~n~-~~v~----~~~~~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~ 391 (406)
.|..+ +-+- +.. ..+-+-+++--|| -+|=+-+-+..+..|.
T Consensus 285 ~~~~~s~~~d~~~~~~~--~~~~~k~~~wydn-e~gys~r~~d~~~~~~ 330 (334)
T 3cmc_O 285 NGSTVSSTIDALSTMVI--DGKMVKVVSWYDN-ETGYSHRVVDLAAYIA 330 (334)
T ss_dssp TTCCSSEEEEGGGCEEE--TTTEEEEEEEECT-THHHHHHHHHHHHHHH
T ss_pred CCCCccceeccccCeEe--cCCEEEEEEEeCC-CchhhhHHHHHHHHHH
Confidence 33322 2110 111 1234457888999 5677777777777663
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-39 Score=321.11 Aligned_cols=292 Identities=13% Similarity=0.127 Sum_probs=214.3
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEecc-CcCCc-----cccccccCcccc-------------CCCccccc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD-RKAGQ-----SIGSVFPHLISQ-------------DLPTMVAV 122 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~-~~~G~-----~i~~v~p~l~~~-------------~~~~~~~~ 122 (406)
||+||||+|+ |++|++++|+|.+||++|+++++++ ...++ +++++|+.|.+. .+..+...
T Consensus 2 M~ikVgI~G~-G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~ 80 (335)
T 1u8f_O 2 GKVKVGVNGF-GRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQER 80 (335)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCS
T ss_pred CceEEEEEcc-CHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecC
Confidence 3579999995 9999999999999999999999984 44443 567888877531 11111111
Q ss_pred Cccc--C--CCCCEEEEcCCCcchHHHHhh-CCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchh
Q 015441 123 KDAD--F--SNVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISRE 197 (406)
Q Consensus 123 ~~~~--~--~~vDvVF~al~~~~s~~~~~~-l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~ 197 (406)
++++ | .++|+||+|+|++.+++.+++ +++|+++||+|++- + +.| .++|| +|++
T Consensus 81 d~~~l~~~~~~vDvV~eatg~~~~~e~a~~~l~aGak~V~iSap~---~--------~~p--------~~V~g---vN~~ 138 (335)
T 1u8f_O 81 DPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPS---A--------DAP--------MFVMG---VNHE 138 (335)
T ss_dssp SGGGCCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSCC---S--------SSC--------BCCTT---TTGG
T ss_pred CHHHCccccCCCCEEEECCCchhhHHHHHHHHhCCCeEEEeccCC---C--------CCC--------eEEec---cCHH
Confidence 2222 4 489999999999999999986 48899999999982 1 223 34555 6777
Q ss_pred hcc-CCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhccc-----H-HHHhcCcccccCCccc
Q 015441 198 DIK-NARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANL-----Y-SEIAEGIYSYGVTRHR 270 (406)
Q Consensus 198 ~i~-~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~-----~-~e~~~ni~py~~~~h~ 270 (406)
+++ ++++|||||||||+++++|+||+++ +++++..|+|+|++||+ ++++++++ + +++++|++||+.+
T Consensus 139 ~~~~~~~iIsnpsCtt~~l~~~lkpL~~~--~gI~~~~~tt~~a~Tg~-q~~vd~~~~~~~~~~r~~~~NiiP~~tg--- 212 (335)
T 1u8f_O 139 KYDNSLKIISNASCTTNCLAPLAKVIHDN--FGIVEGLMTTVHAITAT-QKTVDGPSGKLWRDGRGALQNIIPASTG--- 212 (335)
T ss_dssp GCCTTCSEEECCCHHHHHHHHHHHHHHHH--HCEEEEEEEEEEECCTT-SBSSSCCCTTCGGGGSBTTTCCEEEECC---
T ss_pred HhCCCCCEEECCChHHHHHHHHHHHHHHh--CCcceeEEEEEeccccC-ccccccccccccccchhhhcCceeccCC---
Confidence 787 4789999999999999999999998 57899999999999999 55666543 1 3677899999864
Q ss_pred chhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcE---EecCCCCccccccc
Q 015441 271 HVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFV---KLLEKGVVPRTHNV 347 (406)
Q Consensus 271 h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV---~v~~~~~~P~~~~v 347 (406)
|.+|+++.|..+.+ +++|+|+|||++|||+.+++++|+++++.|||+++|+++|++ +|. .+.+++ .-+ .+-
T Consensus 213 ~a~ei~kvlpel~g---kl~~~a~rVP~~~g~~~~l~~~l~~~~t~eei~~~~~~a~~~-~~~~il~~~~~~-~vs-~d~ 286 (335)
T 1u8f_O 213 AAKAVGKVIPELNG---KLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEG-PLKGILGYTEHQ-VVS-SDF 286 (335)
T ss_dssp TTTTHHHHSGGGTT---SEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHT-TTTTTEEEECSC-CCG-GGG
T ss_pred hhHHHHHHHHHhCC---cEEEEEEEeccCCEEEEEEEEEECCCCCHHHHHHHHHHHhhC-ccCcEEcccCCC-cce-eee
Confidence 56777776655433 699999999999999999999999999999999999999875 443 333321 111 122
Q ss_pred cCCC-cEEE----EEEEeCcCCeEEEEEEehhhhHhHHHHHHHHHHHHh
Q 015441 348 RGSN-YCLM----NVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIML 391 (406)
Q Consensus 348 ~g~n-~~~v----~~~~~~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~ 391 (406)
.|.. .+-+ ++..+ .+.+-+++--||. +|=+-+-+..+..|.
T Consensus 287 ~~~~~s~~~d~~~~~~~~--~~~~k~~~wydne-~gy~~r~~~~~~~~~ 332 (335)
T 1u8f_O 287 NSDTHSSTFDAGAGIALN--DHFVKLISWYDNE-FGYSNRVVDLMAHMA 332 (335)
T ss_dssp TTCCCSEEEETTTCEEEE--TTEEEEEEEECTT-HHHHHHHHHHHHHHH
T ss_pred cCCCCceEEeCCCCEEec--CCEEEEEEEEcCc-chhHhHHHHHHHHHh
Confidence 2222 1111 01111 3355688889994 577777777776664
|
| >2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-38 Score=314.50 Aligned_cols=295 Identities=14% Similarity=0.146 Sum_probs=203.9
Q ss_pred CccEEEEECcccHHHHHHHHHHHc---CCCceEEEEeccCc---CCc--cccccccCccc-------------cCCCccc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLAN---HPYFGIKLMTADRK---AGQ--SIGSVFPHLIS-------------QDLPTMV 120 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~---hp~~elv~l~s~~~---~G~--~i~~v~p~l~~-------------~~~~~~~ 120 (406)
|++||||+|+ |++|++++|+|.+ ||+++++++++... .+. +++++|++|.+ .++....
T Consensus 1 M~ikVgI~G~-G~iGr~l~r~l~~~~~~~~~eivai~~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~ 79 (339)
T 2x5j_O 1 MTVRVAINGF-GRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRVLH 79 (339)
T ss_dssp -CEEEEEECC-SHHHHHHHHHHHHTSGGGTEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEEC
T ss_pred CCeEEEEECc-CHHHHHHHHHHHcCCCCCCEEEEEEeCCCCHHHHHHHhcccccCCCCCceEEEcCCeeEECCEEEEEEe
Confidence 4589999997 9999999999998 99999999987521 111 23455555432 2222121
Q ss_pred ccCcc--cCC--CCCEEEEcCCCcchHHHHhh-CCCCCE--EEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccc
Q 015441 121 AVKDA--DFS--NVDAVFCCLPHGTTQEIIKG-LPKSLK--IVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTE 193 (406)
Q Consensus 121 ~~~~~--~~~--~vDvVF~al~~~~s~~~~~~-l~~G~~--VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE 193 (406)
..+++ .|. ++|+||+|+|++.+++.++. +++|++ |||++++| + .| + .++||
T Consensus 80 ~~dp~~l~~~~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~ad~---d---------~p----~---~~V~g--- 137 (339)
T 2x5j_O 80 ERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSN---D---------LD----A---TVVYG--- 137 (339)
T ss_dssp CSSGGGCCHHHHTCSEEEECSSSCCSHHHHHHHHHTTCSEEEESSCCCT---T---------SS----E---ECCTT---
T ss_pred cCChHHCcccccCCCEEEECCCccccHHHHHHHHHcCCCEEEEeccccC---C---------CC----c---eeecc---
Confidence 12222 343 89999999999999999876 477875 89999875 2 22 0 22444
Q ss_pred cchhhccC-CcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccH-----HHHhcCcccccCC
Q 015441 194 ISREDIKN-ARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLY-----SEIAEGIYSYGVT 267 (406)
Q Consensus 194 ~~~~~i~~-~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~-----~e~~~ni~py~~~ 267 (406)
+|++++++ .++||||||+||+++++|+||+++ ++|++..|+|+|++||+++ ..+.+|. +++++|++||.
T Consensus 138 vN~~~~~~~~~iIsnpsCttn~lap~lkpL~~~--~gI~~~~~ttvha~Tg~q~-~~d~~~~d~r~~r~a~~NiiP~~-- 212 (339)
T 2x5j_O 138 VNQDQLRAEHRIVSNASCTTNCIIPVIKLLDDA--YGIESGTVTTIHSAMHDQQ-VIDAYHPDLRRTRAASQSIIPVD-- 212 (339)
T ss_dssp TSGGGCCTTCCEEECCCHHHHHHHHHHHHHHHH--HCEEEEEEEEEECCC------------CTTTTSCCCCCCEEEC--
T ss_pred cCHHHhcCCCCEEECCCcHHHHHHHHHHHHHHc--cCcceeeEEEEEecccccc-ccccccccccchhhHHhCccccc--
Confidence 67777776 789999999999999999999998 6889999999999999954 4565542 24578999997
Q ss_pred cccchhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcE---EecCCCCcccc
Q 015441 268 RHRHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFV---KLLEKGVVPRT 344 (406)
Q Consensus 268 ~h~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV---~v~~~~~~P~~ 344 (406)
|.|.+|+++.|..+.+ +++++|+|||+++||+.++|++|+++++.|||+++|+++|++ +|. .+.+++ .-..
T Consensus 213 -tg~a~ei~kvlp~l~g---kl~~~a~rVP~~~g~~~~l~v~l~k~~t~eei~~~lk~a~~~-~l~gil~y~~~~-~vs~ 286 (339)
T 2x5j_O 213 -TKLAAGITRFFPQFND---RFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQG-AFHGIVDYTELP-LVSV 286 (339)
T ss_dssp -CCHHHHHHHHSGGGTT---SEEEEEEECSSCSCEEEEEEEEESSCCCHHHHHHHHHHHHHT-TTTTTEEEECSC-CCGG
T ss_pred -CChHHHHHHHHHHhcC---cEEEEEEEecccCcEEEEEEEEECCCCCHHHHHHHHHHHhhc-CCCcEEcccCCc-cccc
Confidence 4467888877754433 699999999999999999999999999999999999999864 443 333332 1111
Q ss_pred ccccCC-CcEEEEEEE--eCcCCeEEEEEEehhhhHhHHHHHHHHHHHHhC
Q 015441 345 HNVRGS-NYCLMNVFP--DRIPGRAIIISVIDNLVKGASGQALQNLNIMLG 392 (406)
Q Consensus 345 ~~v~g~-n~~~v~~~~--~~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~g 392 (406)
+-.|. ..+-+-... --..+-+-+++--|| -+|=+-+-+..+..|..
T Consensus 287 -d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydn-e~gys~r~~d~~~~~~~ 335 (339)
T 2x5j_O 287 -DFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDN-EWGFANRMLDTTLAMAT 335 (339)
T ss_dssp -GGTTCCSSEEEEEEEEEEETTTEEEEEEEECH-HHHHHHHHHHHHHHHHC
T ss_pred -ccCCCCCceEEEcccceeccCCEEEEEEEeCC-CcccHhHHHHHHHHHhh
Confidence 22233 222221111 112344558888999 56777777777777643
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=309.04 Aligned_cols=289 Identities=11% Similarity=0.156 Sum_probs=211.8
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEecc-CcC---Cc--cccccccCcc-cc--------------CCCccc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD-RKA---GQ--SIGSVFPHLI-SQ--------------DLPTMV 120 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~-~~~---G~--~i~~v~p~l~-~~--------------~~~~~~ 120 (406)
||+||||+|+ |++|++++|+|.+||++|++++++. .+. +. +++++|+.|. +. .+..+.
T Consensus 2 m~ikVgI~G~-GrIGr~l~R~l~~~p~vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v~~ 80 (337)
T 3e5r_O 2 GKIKIGINGF-GRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFG 80 (337)
T ss_dssp CCEEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEEEC
T ss_pred CceEEEEECc-CHHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEEEe
Confidence 3479999998 9999999999999999999999983 222 22 2377777765 21 111122
Q ss_pred ccCccc--C--CCCCEEEEcCCCcchHHHHhh-CCCCC--EEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccc
Q 015441 121 AVKDAD--F--SNVDAVFCCLPHGTTQEIIKG-LPKSL--KIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTE 193 (406)
Q Consensus 121 ~~~~~~--~--~~vDvVF~al~~~~s~~~~~~-l~~G~--~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE 193 (406)
..++++ | .++|+||+|+|++.+++.+++ +++|+ +|||++++ + .| .++||
T Consensus 81 ~~dp~~l~w~~~~vDvV~eaTg~~~~~e~a~~~l~aGak~VVIs~pa~----d---------~p--------~~V~g--- 136 (337)
T 3e5r_O 81 IRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSK----D---------AP--------MFVCG--- 136 (337)
T ss_dssp CSCGGGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCS----S---------SC--------BCCTT---
T ss_pred cCChHHccccccCCCEEEECCCchhhHHHHHHHHHcCCCEEEEecCCC----C---------CC--------EEEec---
Confidence 223333 3 489999999999999999976 47888 89998872 2 23 34565
Q ss_pred cchhhcc-CCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccH------HHHhcCcccccC
Q 015441 194 ISREDIK-NARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLY------SEIAEGIYSYGV 266 (406)
Q Consensus 194 ~~~~~i~-~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~------~e~~~ni~py~~ 266 (406)
+|+++++ ++++|||||||||+++++|+||+++ ++|++..|+|+|++||+ +++++..+. +++++|++||+.
T Consensus 137 vN~~~~~~~~~iIsnpsCtt~~la~~lkpL~~~--~gI~~~~~ttvha~Tg~-q~~vd~~~~~~~~~~r~~~~NiiP~~t 213 (337)
T 3e5r_O 137 VNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDN--FGIIEGLMTTVHAITAT-QKTVDGPSSKDWRGGRAASFNIIPSST 213 (337)
T ss_dssp TTGGGCCTTCCEEECCCHHHHHHHHHHHHHHHH--HCEEEEEEEEEEECCTT-SBSSSCCCTTCSGGGSBGGGSCEEEEC
T ss_pred cCHHHhCCCCcEEECCChHHHHHHHHHHHHHHh--cCccccceeEEEeeccc-cccccccccccccccccHhhCccccCC
Confidence 6777777 4789999999999999999999998 57899999999999998 777776542 356789999986
Q ss_pred CcccchhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcE---EecCCCCccc
Q 015441 267 TRHRHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFV---KLLEKGVVPR 343 (406)
Q Consensus 267 ~~h~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV---~v~~~~~~P~ 343 (406)
+|.+|+++.|..+.+ +++|+|+|||++|||+.+++++|+++++.|||+++|+++|++ +|. .+.+++ .-.
T Consensus 214 ---g~a~ei~kvlpel~g---kl~~~a~rVP~~~g~~~~l~~~l~k~~t~eei~~~~~~a~~~-~l~gil~y~~~~-~vs 285 (337)
T 3e5r_O 214 ---GAAKAVGKVLPDLNG---KLTGMSFRVPTVDVSVVDLTVRIEKAASYDAIKSAIKSASEG-KLKGIIGYVEED-LVS 285 (337)
T ss_dssp ---CHHHHHHHHSGGGTT---TEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHT-TTTTTEEEECSC-CCG
T ss_pred ---CchHHHHHHHHHhCC---cEEEEEEEeccCCeEEEEEEEEECCCccHHHHHHHHHHHhhC-CCCCcccCCCCC-eee
Confidence 367888877755533 699999999999999999999999999999999999999864 443 333322 111
Q ss_pred cccccCCCcEEE-----EEEEeCcCCeEEEEEEehhhhHhHHHHHHHHHHHH
Q 015441 344 THNVRGSNYCLM-----NVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIM 390 (406)
Q Consensus 344 ~~~v~g~n~~~v-----~~~~~~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~ 390 (406)
.+-.|..+-.| ++..+ .+-+-+++--|| -+|=+-+-+..+..|
T Consensus 286 -~d~~~~~~s~~~d~~~~~~~~--~~~~k~~~wydn-e~gys~r~~~~~~~~ 333 (337)
T 3e5r_O 286 -TDFVGDSRSSIFDAKAGIALN--DNFVKLVAWYDN-EWGYSNRVIDLIRHM 333 (337)
T ss_dssp -GGGTTCCCSEEEETTTCEEEE--TTEEEEEEEECT-THHHHHHHHHHHHHH
T ss_pred -eeecCCCCceEEecccCcEec--CCEEEEEEEeCC-CcchHhHHHHHHHHH
Confidence 12233322111 01111 233457888899 567677777766665
|
| >3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-37 Score=306.69 Aligned_cols=292 Identities=11% Similarity=0.113 Sum_probs=208.9
Q ss_pred CccEEEEECcccHHHHHHHHHHHcC--CCceEEEEecc-------------CcCCcccccccc---Cc--cccCCCcccc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANH--PYFGIKLMTAD-------------RKAGQSIGSVFP---HL--ISQDLPTMVA 121 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~h--p~~elv~l~s~-------------~~~G~~i~~v~p---~l--~~~~~~~~~~ 121 (406)
||+||||+|+ |++|++++|+|.+| |+++++++++. +..|+....++. .+ .+..+..+..
T Consensus 1 M~ikVgI~G~-G~IGr~v~r~l~~~~~~~~evvaInd~~~~~~~~~l~~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~ 79 (339)
T 3b1j_A 1 MTIRVAINGF-GRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCD 79 (339)
T ss_dssp CCEEEEEECC-SHHHHHHHHHHHHCSCCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECC
T ss_pred CceEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHhccccccCCCCCcEEEcCCeeeecCceEEEEec
Confidence 4689999998 99999999999999 99999999864 233433222211 11 1222222222
Q ss_pred cCcc--cCC--CCCEEEEcCCCcchHHHHhh-CCCCCE--EEEcCCcccCCCccchhhhcCCCCCCccchhhhhcccccc
Q 015441 122 VKDA--DFS--NVDAVFCCLPHGTTQEIIKG-LPKSLK--IVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEI 194 (406)
Q Consensus 122 ~~~~--~~~--~vDvVF~al~~~~s~~~~~~-l~~G~~--VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~ 194 (406)
.+++ .|. ++|+||+|+|++.+++.++. +++|++ |||++++ + +.| ..++|| +
T Consensus 80 ~dp~~l~w~~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~~~----~--------~~p-------~~~V~g---V 137 (339)
T 3b1j_A 80 RNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGK----G--------EGV-------GTYVIG---V 137 (339)
T ss_dssp SCGGGSCTTTTTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCB----S--------SSC-------EECCTT---T
T ss_pred CChHHCcccccCCCEEEECCCccccHHHHHHHHHcCCcEEEEeCCCC----C--------CCC-------eeEEcc---c
Confidence 2222 353 89999999999999999976 478887 8999986 2 133 033455 5
Q ss_pred chhhccC--CcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccH-----HHHhcCcccccCC
Q 015441 195 SREDIKN--ARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLY-----SEIAEGIYSYGVT 267 (406)
Q Consensus 195 ~~~~i~~--~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~-----~e~~~ni~py~~~ 267 (406)
|+++++. .++||||||+||+++++|+||+++ ++++++.++|+|++||+ +++++..|. +.++.|++||..+
T Consensus 138 N~~~~~~~~~~IISnasCtTn~lap~lk~L~~~--fgI~~~~~tTvha~Tg~-q~~vd~~~~d~r~~r~a~~NiiP~~tg 214 (339)
T 3b1j_A 138 NDSEYRHEDFAVISNASCTTNCLAPVAKVLHDN--FGIIKGTMTTTHSYTLD-QRILDASHRDLRRARAAAVNIVPTTTG 214 (339)
T ss_dssp TGGGCCTTTCSEEECCCHHHHHHHHHHHHHHHH--TCEEEEEEEEEEECCTT-SCSSSCCCSSTTTTSCTTSCCEEEECS
T ss_pred CHHHhCcCCCeEEECCcchhhHHHHHHHHHHHh--CCeeEEEEEEEEeecCC-chhcccchhhhhccccHHHceEcccCc
Confidence 7777764 689999999999999999999998 78999999999999999 778887653 2456899999988
Q ss_pred cccchhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcE---EecCCCCcccc
Q 015441 268 RHRHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFV---KLLEKGVVPRT 344 (406)
Q Consensus 268 ~h~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV---~v~~~~~~P~~ 344 (406)
.|++++++...|. -+++++|+|||+++||+.+++++|+++++.|||+++|+++|. .+|. .+.+++ .-..
T Consensus 215 aakav~kVlpeL~------gkl~g~a~rVP~~~g~~~dl~v~l~k~~t~eeI~~~lk~a~~-~~l~gil~y~~~~-~vs~ 286 (339)
T 3b1j_A 215 AAKAVALVIPELK------GKLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQ-TTMKGIIKYSDLP-LVSS 286 (339)
T ss_dssp HHHHHHHHCGGGT------TTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHH-STTBTTEEEECSC-CCGG
T ss_pred hHHHHHHHhHhhc------CcEEEEEEEeccCCEEEEEEEEEEcCcCCHHHHHHHHHHhhc-CCCCCccCccCCc-eeeh
Confidence 8877655544332 159999999999999999999999999999999999999975 3543 333322 1111
Q ss_pred ccccCCC-cEEEE----EEEeCcCCeEEEEEEehhhhHhHHHHHHHHHHHHh
Q 015441 345 HNVRGSN-YCLMN----VFPDRIPGRAIIISVIDNLVKGASGQALQNLNIML 391 (406)
Q Consensus 345 ~~v~g~n-~~~v~----~~~~~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~ 391 (406)
+-.|.. .+-+- +.. ..+-+-+++--|| -.|=+-+-+..+..|.
T Consensus 287 -d~~~~~~s~~~d~~~~~~~--~~~~~k~~~wydn-e~gys~r~~d~~~~~~ 334 (339)
T 3b1j_A 287 -DFRGTDESSIVDSSLTLVM--DGDLVKVIAWYDN-EWGYSQRVVDLAELAA 334 (339)
T ss_dssp -GGTTCCSSEEEEGGGCEEE--TTTEEEEEEEECT-THHHHHHHHHHHHHHH
T ss_pred -hcCCCCCceEEecccCcee--cCCEEEEEEEeCC-CcchHhHHHHHHHHHh
Confidence 223332 22221 111 1234458888999 5677777777777663
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-38 Score=313.47 Aligned_cols=272 Identities=13% Similarity=0.181 Sum_probs=200.3
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccC------cCCccccccccCcccc-------CCCcccccCcccCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR------KAGQSIGSVFPHLISQ-------DLPTMVAVKDADFSN 129 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~------~~G~~i~~v~p~l~~~-------~~~~~~~~~~~~~~~ 129 (406)
|+||||+|+ |++|++++|+|.+||+++++++.+.. .+|+...++|+.+.+. ++. +....++.+.+
T Consensus 1 mikVgIiGa-G~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~-v~~~~~~~~~~ 78 (337)
T 1cf2_P 1 MKAVAINGY-GTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIE-VAGTVDDMLDE 78 (337)
T ss_dssp CEEEEEECC-STTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCC-CCEEHHHHHHT
T ss_pred CeEEEEEeE-CHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceE-EcCCHHHHhcC
Confidence 579999998 99999999999999999999998754 1233222455554321 111 11100122358
Q ss_pred CCEEEEcCCCcchHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCcEEecC
Q 015441 130 VDAVFCCLPHGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANP 208 (406)
Q Consensus 130 vDvVF~al~~~~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~iVanP 208 (406)
+|+||+|+|++.++++++.+ ++|++|||++++ ++ ++. . +.++|| +|+++++++++|+||
T Consensus 79 vDvV~~atp~~~~~~~a~~~l~aG~~VId~sp~---~~--------d~~--~----~~~V~g---vN~e~~~~~~iIanp 138 (337)
T 1cf2_P 79 ADIVIDCTPEGIGAKNLKMYKEKGIKAIFQGGE---KH--------EDI--G----LSFNSL---SNYEESYGKDYTRVV 138 (337)
T ss_dssp CSEEEECCSTTHHHHHHHHHHHHTCCEEECTTS---CH--------HHH--S----CEECHH---HHGGGGTTCSEEEEC
T ss_pred CCEEEECCCchhhHHHHHHHHHcCCEEEEecCC---CC--------ccC--C----CeEEee---eCHHHhcCCCEEEcC
Confidence 99999999999999999865 789999999998 22 110 0 133454 677778878999999
Q ss_pred CChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhcCcccc--cCCcccchhhhhhhhccccCCC
Q 015441 209 GCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSY--GVTRHRHVPEIEQGLTGFASSK 286 (406)
Q Consensus 209 gC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni~py--~~~~h~h~pEi~~~l~~i~~~~ 286 (406)
|||||+++++|+||+++ ++++++.++|+|++||.+..+ .++.+|+.|| +.+ |.|.+|+++.| ++
T Consensus 139 ~C~tt~l~~~l~pL~~~--~gI~~~~vtt~~a~s~p~~~~------~~~~~NiiP~~i~~~-~~~~~ei~kil-~l---- 204 (337)
T 1cf2_P 139 SCNTTGLCRTLKPLHDS--FGIKKVRAVIVRRGADPAQVS------KGPINAIIPNPPKLP-SHHGPDVKTVL-DI---- 204 (337)
T ss_dssp CHHHHHHHHHHHHHHHH--HCEEEEEEEEEEESSCTTCTT------CCCSSCCEESSSSSS-CTHHHHHHTTS-CC----
T ss_pred CcHHHHHHHHHHHHHHh--cCcceeEEEEEEEeecCCccc------cchhcCEEeccCCCC-CcchHHHHhhh-ee----
Confidence 99999999999999998 588999999999998843221 2567899999 455 45889999877 43
Q ss_pred ceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCC-Cccccccc------cCC---CcEEEE
Q 015441 287 VTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKG-VVPRTHNV------RGS---NYCLMN 356 (406)
Q Consensus 287 ~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~-~~P~~~~v------~g~---n~~~v~ 356 (406)
+|+|||+|||++|||+.++|++|+++++.+|++++|+++ +||++.++. ..|.+... .|- +...+.
T Consensus 205 -~v~~t~~rVPv~~g~~~~~~v~l~~~~t~eei~~~~~~~----~~v~v~~~~~~~~~~~~~~~~~~~~gr~r~d~~~~~ 279 (337)
T 1cf2_P 205 -NIDTMAVIVPTTLMHQHNVMVEVEETPTVDDIIDVFEDT----PRVILISAEDGLTSTAEIMEYAKELGRSRNDLFEIP 279 (337)
T ss_dssp -CEEEEEEEESCCSCEEEEEEEEESSCCCHHHHHHHHHHS----TTEEEECTTTTCCSHHHHHHHHHHHTCGGGCCCSEE
T ss_pred -EEEEEEEEcCccCeEEEEEEEEECCCCCHHHHHHHHHhC----CCcEEeccccCCCCCcchhhhhhhcCCCccCchhhe
Confidence 699999999999999999999999999999999999998 899998753 23444222 122 223333
Q ss_pred EEEeC---cCCeEEEEEEehhh
Q 015441 357 VFPDR---IPGRAIIISVIDNL 375 (406)
Q Consensus 357 ~~~~~---~~~~~~~~~v~DNL 375 (406)
+..+. ..+.+.++-++||-
T Consensus 280 ~w~~~~~~~~~~~~~~~~~~q~ 301 (337)
T 1cf2_P 280 VWRESITVVDNEIYYMQAVHQE 301 (337)
T ss_dssp EEGGGCEEETTEEEEEEEECTT
T ss_pred eehheeEEcCCEEEEEEecCCc
Confidence 33332 24567788888863
|
| >2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=299.93 Aligned_cols=286 Identities=15% Similarity=0.157 Sum_probs=208.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEec-------------cCcCCcccccccc---Cc--cccCCCcccccCc-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA-------------DRKAGQSIGSVFP---HL--ISQDLPTMVAVKD- 124 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s-------------~~~~G~~i~~v~p---~l--~~~~~~~~~~~~~- 124 (406)
+||||+|+ |+||++++|+|.+| +++++++++ ++..|+-...+.. .+ .++++......++
T Consensus 1 ikVgInG~-G~IGr~vlr~l~~~-~~evvaind~~~~~~~a~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~dp~ 78 (331)
T 2g82_O 1 MKVGINGF-GRIGRQVFRILHSR-GVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPK 78 (331)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHH-TCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGG
T ss_pred CEEEEECc-CHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhHhhhccccCCCCCceEEEcCCEEEECCEEEEEEecCChh
Confidence 48999997 99999999999988 999998775 3445642222221 11 2334432222233
Q ss_pred -ccCC--CCCEEEEcCCCcchHHHHhh-CCCCC--EEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhh
Q 015441 125 -ADFS--NVDAVFCCLPHGTTQEIIKG-LPKSL--KIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISRED 198 (406)
Q Consensus 125 -~~~~--~vDvVF~al~~~~s~~~~~~-l~~G~--~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~ 198 (406)
.+|. ++|+||+|+|++.+++.+++ +++|+ +|||++++ + +.|..+|| +|+++
T Consensus 79 ~l~w~~~gvDiV~estG~~~s~e~a~~~l~aGakkvVIsaps~----d--------~~p~vV~g-----------VN~~~ 135 (331)
T 2g82_O 79 EIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAK----G--------EDITIVMG-----------VNHEA 135 (331)
T ss_dssp GSCTTTTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCB----S--------CSEECCTT-----------TTGGG
T ss_pred hCcccccCCCEEEECCCchhhHHHHHHHHHCCCCEEEECCCCc----C--------CCCEEeec-----------cCHHH
Confidence 3465 78999999999999999986 47888 89999886 2 24544544 55555
Q ss_pred ccC--CcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccH-----HHHhcCcccccCCcccc
Q 015441 199 IKN--ARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLY-----SEIAEGIYSYGVTRHRH 271 (406)
Q Consensus 199 i~~--~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~-----~e~~~ni~py~~~~h~h 271 (406)
++. +++||||||+||+++++|+||+++ ++|+++.|+|+|++||+ ++..+.+|. ++++.|++||..+.|++
T Consensus 136 ~~~~~~~IIsnasCtTn~lap~lk~L~~~--fgI~~~~mtTvha~Tg~-q~~~d~~~~d~r~~r~~a~NiIP~~tGaaka 212 (331)
T 2g82_O 136 YDPSRHHIISNASCTTNSLAPVMKVLEEA--FGVEKALMTTVHSYTND-QRLLDLPHKDLRRARAAAINIIPTTTGAAKA 212 (331)
T ss_dssp CCTTTCCEEECCCHHHHHHHHHHHHHHHH--TCEEEEEEEEEEECCTT-SBSSSCCCSSTTTTSBGGGCCEEECCCHHHH
T ss_pred hCcCCCCEEECCChHHHHHHHHHHHHHHh--cCccEEEEEEEeecccc-cchhccccccccccchhhhCccccCCCchhh
Confidence 653 689999999999999999999998 68999999999999999 777886654 46788999999998888
Q ss_pred hhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCC---cEEecCCCCcccccccc
Q 015441 272 VPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEE---FVKLLEKGVVPRTHNVR 348 (406)
Q Consensus 272 ~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~---fV~v~~~~~~P~~~~v~ 348 (406)
+++|...|. .+++++|+|||+++||+.+++++|+++++.|||+++|+++|++ + .+.+.+++ .-+ .+-.
T Consensus 213 v~kIlp~L~------gkl~g~a~RVPv~~gs~~dl~v~l~k~~t~eei~~~lk~a~~~-~l~gil~y~~~~-~vs-~d~~ 283 (331)
T 2g82_O 213 TALVLPSLK------GRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEG-PLKGILAYTEDE-IVL-QDIV 283 (331)
T ss_dssp HTTTCGGGT------TSEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHT-TTTTTEEEECSC-CCG-GGGT
T ss_pred hhhhHHhcC------CCEEEEEEEeCCCCEEEEEEEEEECCCCCHHHHHHHHHHhhcC-ccCCccCCCCCC-eee-eeeC
Confidence 776655442 2699999999999999999999999999999999999999865 4 34444332 111 1223
Q ss_pred CCCcEEEEEEEeC-----cCCeEEEEEEehhhhHhHHHHHHHHHHHH
Q 015441 349 GSNYCLMNVFPDR-----IPGRAIIISVIDNLVKGASGQALQNLNIM 390 (406)
Q Consensus 349 g~n~~~v~~~~~~-----~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~ 390 (406)
|..+-.| .|. ..+-+-+++--|| -+|=+-+-+..+..|
T Consensus 284 ~~~~s~~---~d~~~~~~~~~~~k~~~wydn-e~gys~r~~d~~~~~ 326 (331)
T 2g82_O 284 MDPHSSI---VDAKLTKALGNMVKVFAWYDN-EWGYANRVADLVELV 326 (331)
T ss_dssp TCCCSEE---EEGGGCEEETTEEEEEEEECT-THHHHHHHHHHHHHH
T ss_pred CCCccce---ecchhccccCCEEEEEEEECC-CchhHHHHHHHHHHH
Confidence 3322111 111 1234457788899 567777777777665
|
| >2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=304.56 Aligned_cols=290 Identities=11% Similarity=0.127 Sum_probs=211.9
Q ss_pred CccEEEEECcccHHHHHHHHHHHcC--CCceEEEEecc-------------CcCCccccccc---cCc--cccCCCcccc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANH--PYFGIKLMTAD-------------RKAGQSIGSVF---PHL--ISQDLPTMVA 121 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~h--p~~elv~l~s~-------------~~~G~~i~~v~---p~l--~~~~~~~~~~ 121 (406)
||+||||+|+ |+||++++|+|.+| |+++++++++. +..|+....++ +.+ .+..+..+..
T Consensus 1 M~ikVgInGf-GrIGr~vlR~l~~~~~~~veIVaInd~~d~~~~a~ll~yds~~G~~~~~v~~~~~~l~v~g~~i~v~~~ 79 (380)
T 2d2i_A 1 MTIRVAINGF-GRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCD 79 (380)
T ss_dssp CCEEEEEECC-SHHHHHHHHHHHHCSSCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECC
T ss_pred CCcEEEEECc-CHHHHHHHHHHhcCCCCCEEEEEEecCCCHHHHHHhhcccccCCCCCCcEEEeCCeEEECCeEEEEEec
Confidence 4689999997 99999999999998 99999999874 23343222221 111 1222222222
Q ss_pred cCccc--CC--CCCEEEEcCCCcchHHHHhh-CCCCCE--EEEcCCcccCCCccchhhhcCCCCCCccchhhhhcccccc
Q 015441 122 VKDAD--FS--NVDAVFCCLPHGTTQEIIKG-LPKSLK--IVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEI 194 (406)
Q Consensus 122 ~~~~~--~~--~vDvVF~al~~~~s~~~~~~-l~~G~~--VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~ 194 (406)
.++++ |. ++|+||+|+|++.+++.++. +++|++ |||++++ + +.| ..++|| +
T Consensus 80 ~dp~~l~w~~~gvDvV~e~TG~f~s~e~a~~hl~aGakkVVIs~ps~----d--------~~p-------~~~V~G---V 137 (380)
T 2d2i_A 80 RNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGK----A--------EGV-------GTYVIG---V 137 (380)
T ss_dssp SCGGGCCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCB----S--------SSC-------EECCTT---T
T ss_pred CChHHCCcccCCCCEEEECCCccccHHHHHHHHHcCCcEEEEcCCCC----C--------CCC-------ceEEcc---c
Confidence 23333 42 89999999999999999876 578876 8999986 2 133 033555 5
Q ss_pred chhhccC--CcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccH-----HHHhcCcccccCC
Q 015441 195 SREDIKN--ARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLY-----SEIAEGIYSYGVT 267 (406)
Q Consensus 195 ~~~~i~~--~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~-----~e~~~ni~py~~~ 267 (406)
|+++++. .+|||||||+||+++++|+||+++ ++|+++.|+|+|++||+ ++.+|.+|. +.++.|++||..+
T Consensus 138 N~e~~~~~~~~IVSNasCtTn~lap~lk~L~d~--fgI~~g~mTTvha~Tg~-q~~vD~~~~d~r~gR~aa~NiIP~~Tg 214 (380)
T 2d2i_A 138 NDSEYRHEDFAVISNASCTTNCLAPVAKVLHDN--FGIIKGTMTTTHSYTLD-QRILDASHRDLRRARAAAVNIVPTTTG 214 (380)
T ss_dssp TGGGCCTTTCSEEECCCHHHHHHHHHHHHHHHH--HCEEEEEEEEEEECCTT-SCSSSCCCSSTTTTSCGGGCCEEEECC
T ss_pred CHHHhcccCCcEEECCchHHHHHHHHHHHHHHh--cCeeEEEEEEEeecccc-chhhccchhhhhhcchHhhCeEeccCc
Confidence 7777764 589999999999999999999998 68999999999999999 888887643 3457899999988
Q ss_pred ccc----chhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCc---EEecCCCC
Q 015441 268 RHR----HVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEF---VKLLEKGV 340 (406)
Q Consensus 268 ~h~----h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~f---V~v~~~~~ 340 (406)
.|+ ++||+++ +++++++|||+++||+.+++++|+++++.|||+++|+++|++ +| +.+.+++
T Consensus 215 aakav~kvlPeL~g----------kl~g~avRVPt~~gs~~dlt~~l~k~~t~eeI~~~lk~a~~~-~lkgil~y~~~~- 282 (380)
T 2d2i_A 215 AAKAVALVIPELKG----------KLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQT-TMKGIIKYSDLP- 282 (380)
T ss_dssp HHHHHHHHCGGGTT----------TEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHT-TTTTTEEEECSC-
T ss_pred hHHHHHhhhHhhhC----------cEEEEEEEeccCCEEEEEEEEEECCcCCHHHHHHHHHHHhhC-CCCCccCCcCCC-
Confidence 766 7788865 589999999999999999999999999999999999999863 44 3444332
Q ss_pred ccccccccCCCcEEE-----EEEEeCcCCeEEEEEEehhhhHhHHHHHHHHHHHHhCC
Q 015441 341 VPRTHNVRGSNYCLM-----NVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMLGF 393 (406)
Q Consensus 341 ~P~~~~v~g~n~~~v-----~~~~~~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~g~ 393 (406)
.-. .+-.|..+-.| ++.. ..+-+-+++--|| -+|=+-+-|..+..|...
T Consensus 283 ~vS-~d~~~~~~ssi~d~~~~~~~--~~~~vk~~~wyDN-e~gys~r~~d~~~~~~~~ 336 (380)
T 2d2i_A 283 LVS-SDFRGTDESSIVDSSLTLVM--DGDLVKVIAWYDN-EWGYSQRVVDLAELAARK 336 (380)
T ss_dssp CCG-GGGTTCCCSEEEEGGGCEEE--TTTEEEEEEEECT-THHHHHHHHHHHHHHHTT
T ss_pred eee-eeeCCCCcceEEecccCcee--cCCEEEEEEEECC-CcchHhHHHHHHHHHHhh
Confidence 111 12233322111 0111 1234458888999 678888888888888664
|
| >3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3vaz_P* 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=269.88 Aligned_cols=291 Identities=15% Similarity=0.193 Sum_probs=207.5
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-----ccccccccCccc-------------cCCCccccc
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-----QSIGSVFPHLIS-------------QDLPTMVAV 122 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-----~~i~~v~p~l~~-------------~~~~~~~~~ 122 (406)
.|++||+|+| .|+|||.++|.+.+++.+|++++++..+.. .+++++|..|.+ +.+..+++.
T Consensus 2 ~m~~kv~ING-fGrIGr~v~R~~~~~~~~~ivaind~~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~inGk~I~v~~e~ 80 (338)
T 3lvf_P 2 SMAVKVAING-FGRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVDGGFRVNGKEVKSFSEP 80 (338)
T ss_dssp CCCEEEEEEC-CSHHHHHHHHHHHTSTTEEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCS
T ss_pred CccEEEEEEC-CCcHHHHHHHHHHHCCCceEEEEecCCCHHHHHHHhccCCCCCCcCCeEEEcCCEEEECCEEEEEEEec
Confidence 4678999999 999999999999988999999999732221 357778877752 233322222
Q ss_pred Cc--ccCC--CCCEEEEcCCCcchHHHHhh-CCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchh
Q 015441 123 KD--ADFS--NVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISRE 197 (406)
Q Consensus 123 ~~--~~~~--~vDvVF~al~~~~s~~~~~~-l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~ 197 (406)
++ .+|. ++|+||+|+|.+.+++.+++ +++|++.|.+|++. ++ ++|+++|++|.+.. .
T Consensus 81 dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISaps--~~--------d~p~vV~gVN~~~~-~------- 142 (338)
T 3lvf_P 81 DASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPA--TG--------DLKTIVFNTNHQEL-D------- 142 (338)
T ss_dssp CGGGSCTTTTTCSEEEECSSSCCBHHHHHHHHHTTCSEEEESSCC--BS--------SCEECCTTTTGGGC-C-------
T ss_pred ccccCCccccCCCEEEEccCCcCCHHHHHHHHHcCCCEEEECCCC--CC--------CCCEEeccCCHHHc-C-------
Confidence 22 3454 89999999999999999976 68888544456654 23 46888888887653 1
Q ss_pred hccCCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccH-------HHHhcCcccccCCcc-
Q 015441 198 DIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLY-------SEIAEGIYSYGVTRH- 269 (406)
Q Consensus 198 ~i~~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~-------~e~~~ni~py~~~~h- 269 (406)
...+|||||+|+|++++++|+||+++ |+|+++.|+|+|++||.++ ..|..+. +.++.|++|...+.-
T Consensus 143 --~~~~IISNasCTTn~Lap~lkvL~d~--fGI~~g~mTTvha~T~~q~-~~D~~~~k~d~r~~r~aa~NiIP~~tGaak 217 (338)
T 3lvf_P 143 --GSETVVSGASCTTNSLAPVAKVLNDD--FGLVEGLMTTIHAYTGDQN-TQDAPHRKGDKRRARAAAENIIPNSTGAAK 217 (338)
T ss_dssp --SCCSEEECCCHHHHHHHHHHHHHHHH--HCEEEEEEEEEEECCTTSC-SSSCCCTTCCTTTTSCGGGCCEEEECSTTT
T ss_pred --ccCCeEecCchhhhhhHHHHHHHHHh--cCEEEEEEeeeccccchhh-hhcCCccccccccchhhhceEEeCCCchHH
Confidence 23689999999999999999999998 7999999999999999854 4553321 356789999876542
Q ss_pred ---cchhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCC-CCCHHHHHHHHHHHcCCCCcEEecCCCCccccc
Q 015441 270 ---RHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAP-GVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTH 345 (406)
Q Consensus 270 ---~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~-~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~~ 345 (406)
+.+||+.. +++.+|+|||+++||+.+++++|++ +++.|||+++|+++.++. +.+.+++- -. .
T Consensus 218 av~kVlPeL~g----------kltg~avRVPv~~~s~~dlt~~lek~~~t~eei~~~lk~As~g~--l~yte~~~-VS-~ 283 (338)
T 3lvf_P 218 AIGKVIPEIDG----------KLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNES--FGYTEDEI-VS-S 283 (338)
T ss_dssp TGGGTCGGGTT----------SEEEEEEEESCSSCEEEEEEEEESSSSCCHHHHHHHHHHTCCSS--EEEECSCC-CG-G
T ss_pred HHhhhchhhcC----------cEEEEEEEcCCCceEEEEEEEEEccCCCCHHHHHHHHHHhhcCC--cccccCCE-Ee-E
Confidence 34566543 6999999999999999999999999 999999999999986553 66665431 11 1
Q ss_pred cccCCCc-EEE----EEEEeC-cCCeEEEEEEehhhhHhHHHHHHHHHHHH
Q 015441 346 NVRGSNY-CLM----NVFPDR-IPGRAIIISVIDNLVKGASGQALQNLNIM 390 (406)
Q Consensus 346 ~v~g~n~-~~v----~~~~~~-~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~ 390 (406)
+-.|..+ +-+ +...+. ..+-+-+++--|| -.|=+-+-+..+..|
T Consensus 284 Df~~~~~ssi~d~~~t~~~~~~~~~~vk~~~WYDN-E~gys~r~~dl~~~~ 333 (338)
T 3lvf_P 284 DVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDN-EMSYTAQLVRTLAYL 333 (338)
T ss_dssp GGTTCCCSEEEEGGGCEEEEETTEEEEEEEEEECT-THHHHHHHHHHHHHH
T ss_pred eeCCCCcceEEecccceEecCCCCCEEEEEEEECC-ccchHHHHHHHHHHH
Confidence 2222221 111 111110 0122346777899 466666667666655
|
| >2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, structural genomi pathogenic protozoa consortium; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=272.03 Aligned_cols=287 Identities=13% Similarity=0.126 Sum_probs=203.1
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEec-cCcCC-----ccccccccCccc-------------cCCCcccccC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA-DRKAG-----QSIGSVFPHLIS-------------QDLPTMVAVK 123 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s-~~~~G-----~~i~~v~p~l~~-------------~~~~~~~~~~ 123 (406)
.+||||+| +|+|||.++|++.++|++|++++++ ..+.. .+++++|..|.+ +.+..++..+
T Consensus 11 ~~kv~ING-fGrIGr~v~ra~~~~~~~evvaInd~~~~~~~~a~l~~yDS~hg~~~~~v~~~~~~l~v~Gk~i~v~~~~d 89 (345)
T 2b4r_O 11 ATKLGING-FGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKD 89 (345)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTCSSEEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEECCSS
T ss_pred heEEEEeC-CchHHHHHHHHHhhCCCcEEEEEcCCCCChHHHHHHhccCCCCCcCCCCEEEcCCEEEECCEEEEEEEcCC
Confidence 36999999 9999999999999999999999997 22211 234556655532 2222222223
Q ss_pred cc--cCC--CCCEEEEcCCCcchHHHHhh-CCCCC--EEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccch
Q 015441 124 DA--DFS--NVDAVFCCLPHGTTQEIIKG-LPKSL--KIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISR 196 (406)
Q Consensus 124 ~~--~~~--~vDvVF~al~~~~s~~~~~~-l~~G~--~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~ 196 (406)
+. +|. ++|+||+|+|.+.+++.++. +++|+ +|||++++ + ++|+.+|++|.+. |.
T Consensus 90 p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVVIsaps~----~--------dvplvV~gVN~~~-~~------ 150 (345)
T 2b4r_O 90 PSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMSAPPK----D--------DTPIYVMGINHHQ-YD------ 150 (345)
T ss_dssp GGGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCS----S--------SCCBCCTTTTGGG-CC------
T ss_pred cccCcccccCCCEEEECcCccccHhhHHHHHHCCCCEEEECCCCC----C--------CCCEEEecCCHHH-hC------
Confidence 22 354 89999999999999999976 46776 58877664 3 3789999998874 32
Q ss_pred hhccCCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhccc--------HHHHhcCcccccCCc
Q 015441 197 EDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANL--------YSEIAEGIYSYGVTR 268 (406)
Q Consensus 197 ~~i~~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~--------~~e~~~ni~py~~~~ 268 (406)
...+|||||+|+|++++++|+||+++ |+|+++.|+|+|++||+++ ..|..+ .++++.|++|+..+.
T Consensus 151 ---~~~~IISNasCTTn~Lap~lk~L~d~--fGI~~~~mTTvhA~T~~q~-~~d~~~~~~~d~r~~r~~a~NiIP~~tGa 224 (345)
T 2b4r_O 151 ---TKQLIVSNASCTTNCLAPLAKVINDR--FGIVEGLMTTVHASTANQL-VVDGPSKGGKDWRAGRCALSNIIPASTGA 224 (345)
T ss_dssp ---TTCCEEECCCHHHHHHHHHHHHHHHH--HCEEEEEEEEEECCCTTSC-SSSCCCGGGCCGGGGSCTTTCCEEEECCH
T ss_pred ---CCCCEEECCchHHHHHHHHHHHHHHh--cCeeEEEEEEeehhhchhh-hhcccccccCCCccccchhhccCcCCCch
Confidence 12579999999999999999999998 7999999999999999954 344332 135678889887553
Q ss_pred c----cchhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCC--CcEEecCCCCcc
Q 015441 269 H----RHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHE--EFVKLLEKGVVP 342 (406)
Q Consensus 269 h----~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~--~fV~v~~~~~~P 342 (406)
- +.+||+.. +++.+|+||||++||+.+++++|+++++.|||+++|+++.++. -.+.+.+++ .-
T Consensus 225 akav~kVlP~L~g----------kltg~avRVPv~~gs~~dltv~lek~~t~eei~~~lk~a~~~~lkgil~y~~~~-~V 293 (345)
T 2b4r_O 225 AKAVGKVLPELNG----------KLTGVAFRVPIGTVSVVDLVCRLQKPAKYEEVALEIKKAAEGPLKGILGYTEDE-VV 293 (345)
T ss_dssp HHHHHHHSGGGTT----------TEEEEEEECSCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSC-CC
T ss_pred HHHHHHhhhhcCC----------cEEEEEEEecccceEEEEEEEEECCCCCHHHHHHHHHHhhhcccCCcccccCCC-ce
Confidence 2 12344322 5999999999999999999999999999999999999985432 144554432 11
Q ss_pred ccccccCCC-cEEE----EEEEeCcCCeEEEEEEehhhhHhHHHHHHHHHHHH
Q 015441 343 RTHNVRGSN-YCLM----NVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIM 390 (406)
Q Consensus 343 ~~~~v~g~n-~~~v----~~~~~~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~ 390 (406)
+ .+-.|.. .+-+ ++..+ .+-+-+++--|| -.|=+-+-+..+..|
T Consensus 294 S-~d~~~~~~ssi~d~~~~~~~~--~~~vk~~~WyDN-E~gys~r~~dl~~~~ 342 (345)
T 2b4r_O 294 S-QDFVHDNRSSIFDMKAGLALN--DNFFKLVSWYDN-EWGYSNRVLDLAVHI 342 (345)
T ss_dssp G-GGGTTCCCSEEEEEEEEEEEE--TTEEEEEEEECT-THHHHHHHHHHHHHH
T ss_pred E-EeeCCCCcccccccccCeEec--CCEEEEEEEeCC-CcchHhHHHHHHHHH
Confidence 1 1223332 2222 11121 334558888999 567777777776665
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=279.46 Aligned_cols=272 Identities=11% Similarity=0.115 Sum_probs=190.1
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCc-----ccc--ccccCc--c-------ccCCCcccccCcc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQ-----SIG--SVFPHL--I-------SQDLPTMVAVKDA 125 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~-----~i~--~v~p~l--~-------~~~~~~~~~~~~~ 125 (406)
||+||||+|+ |+||+.++|+|.+||+++++++++.. ... +++ .+|+.| . +..+. +.....+
T Consensus 1 MmikVgI~G~-G~IGr~v~r~l~~~~~~evvaV~d~~-~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~-v~~~~~~ 77 (343)
T 2yyy_A 1 MPAKVLINGY-GSIGKRVADAVSMQDDMEVIGVTKTK-PDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIP-VEGTILD 77 (343)
T ss_dssp -CEEEEEECC-SHHHHHHHHHHHHSSSEEEEEEEESS-CSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCC-CCCBGGG
T ss_pred CceEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCC-HHHHHHHHHhcCCccccccCCCceeecccCCeEE-ECCchHH
Confidence 4689999997 99999999999999999999998742 222 122 344433 1 11221 1111123
Q ss_pred cCCCCCEEEEcCCCcchHHHHh-h-CCCCCEEEEcCCcccCCCccchhhhcCCC-CCCccchhhhhccccccchhhccCC
Q 015441 126 DFSNVDAVFCCLPHGTTQEIIK-G-LPKSLKIVDLSADFRLRDVSEYEEWYGQP-HIAPDLQKEAVYGLTEISREDIKNA 202 (406)
Q Consensus 126 ~~~~vDvVF~al~~~~s~~~~~-~-l~~G~~VIDlSa~fRl~~~~~~~~~y~~~-~~~Pevn~~~vyglpE~~~~~i~~~ 202 (406)
.+.++|+||+|+|++.+.++++ . +++|++|||.++ +.++ .+| +.+|++|.+. +.+.
T Consensus 78 ~~~~vDiV~eatg~~~s~~~a~~~~l~aG~~VI~sap--~~~d--------~vp~~vV~gvN~~~-----------~~~~ 136 (343)
T 2yyy_A 78 IIEDADIVVDGAPKKIGKQNLENIYKPHKVKAILQGG--EKAK--------DVEDNFNALWSYNR-----------CYGK 136 (343)
T ss_dssp TGGGCSEEEECCCTTHHHHHHHHTTTTTTCEEEECTT--SCGG--------GSSEEECTTTTHHH-----------HTTC
T ss_pred hccCCCEEEECCCccccHHHHHHHHHHCCCEEEECCC--cccc--------CCCceEEcccCHHH-----------hccC
Confidence 3458999999999999988885 5 478999997443 3322 266 7777776554 3446
Q ss_pred cEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhcCcccc----cCCcccchhhhhhh
Q 015441 203 RLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSY----GVTRHRHVPEIEQG 278 (406)
Q Consensus 203 ~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni~py----~~~~h~h~pEi~~~ 278 (406)
++|+||||+|++++++|+||+++ |+++++.++|+|++||.|+.+ ++...|+.|+ ..+. ..++.+.
T Consensus 137 ~iIsn~sCtT~~lap~lk~L~~~--fgI~~~~vtT~~a~sg~~~~~------r~~~~NiiP~~i~~~tg~---~k~~~ki 205 (343)
T 2yyy_A 137 DYVRVVSCNTTGLCRILYAINSI--ADIKKARIVLVRRAADPNDDK------TGPVNAITPNPVTVPSHH---GPDVVSV 205 (343)
T ss_dssp SEEEECCHHHHHHHHHHHHHHTT--SEEEEEEEEEEEESSCTTCSS------CCCSSCCEESSSSSSCTH---HHHHHHH
T ss_pred CEEeccchhhHHHHHHHHHHHHH--cCceEEEEEeeeeccCcCcch------hhHHhcccCCCCCCCCcc---hHHHHHh
Confidence 89999999999999999999987 799999999999999976322 2556789998 3332 2222222
Q ss_pred hccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCC-CCccccccc------cCCC
Q 015441 279 LTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEK-GVVPRTHNV------RGSN 351 (406)
Q Consensus 279 l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~-~~~P~~~~v------~g~n 351 (406)
+-.+ +.+++.+|+||||++||+.+++++|+++++.||++++|+++ +++++.++ ...|.+... .|-.
T Consensus 206 lp~l---~gkl~~~avRVPv~~gh~~~l~v~l~~~~t~eei~~~l~~a----~~v~l~~~~~~l~s~~~~~~~~~~~gR~ 278 (343)
T 2yyy_A 206 VPEF---EGKILTSAVIVPTTLMHMHTLMVEVDGDVSRDDILEAIKKT----PRIITVRAEDGFSSTAKIIEYGRDLGRL 278 (343)
T ss_dssp CGGG---TTSEEEEEEEESCSSCEEEEEEEEEESCCCHHHHHHHHHHS----TTEEEECGGGTCCSHHHHHHHHHHHTCG
T ss_pred hhcc---ccceeeEEEEecccceEEEEEEEEECCCCCHHHHHHHHHhC----CCCEEeccccCCCCCcchhhhhhhcCCC
Confidence 2111 12599999999999999999999999999999999999998 77888764 124554322 2222
Q ss_pred c---EEEEEEEeC---cCCeEEEEEEehhh
Q 015441 352 Y---CLMNVFPDR---IPGRAIIISVIDNL 375 (406)
Q Consensus 352 ~---~~v~~~~~~---~~~~~~~~~v~DNL 375 (406)
+ ..+.+..+. ..+.+.++-++||-
T Consensus 279 r~d~~~~~~~~~~~~~~~~~~~~~~~~~q~ 308 (343)
T 2yyy_A 279 RYDINELVVWEESINVLENEIFLMQAVHQE 308 (343)
T ss_dssp GGCCCSEEEEGGGCEEETTEEEEEEEECTT
T ss_pred cCCchhheeeHhheEEcCCEEEEEEecCcC
Confidence 2 223333332 24567777888863
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-34 Score=282.65 Aligned_cols=271 Identities=10% Similarity=0.132 Sum_probs=194.8
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCcc---ccc-cccCccc---------cCCCcccccCcccCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQS---IGS-VFPHLIS---------QDLPTMVAVKDADFSN 129 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~---i~~-v~p~l~~---------~~~~~~~~~~~~~~~~ 129 (406)
|+||||+|+ |++|++++|+|.+||++++++++++. .+.. ... .++.+.. ..+...... ++.+.+
T Consensus 1 ~ikVgIiGa-G~iG~~~~r~L~~~p~~elvav~d~~-~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~-e~l~~~ 77 (340)
T 1b7g_O 1 MVNVAVNGY-GTIGKRVADAIIKQPDMKLVGVAKTS-PNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTV-EDLIKT 77 (340)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSS-CSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCH-HHHHHH
T ss_pred CeEEEEEec-CHHHHHHHHHHHcCCCCEEEEEEcCC-hHHHHHHHHhcCcceecCcCHHHHhcccccccccCH-hHhhcC
Confidence 479999998 99999999999999999999998854 2211 000 1111111 001000000 111247
Q ss_pred CCEEEEcCCCcchHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCcEEecC
Q 015441 130 VDAVFCCLPHGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANP 208 (406)
Q Consensus 130 vDvVF~al~~~~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~iVanP 208 (406)
+|+||+|+|++.+++.++.+ ++|+++||+|+++|... .+..+|++|.+..|+ .++|+||
T Consensus 78 vDvV~~aTp~~~s~~~a~~~~~aG~kvV~~sa~~~~~~---------~~~~v~~vN~~~~~~-----------~~iIsnp 137 (340)
T 1b7g_O 78 SDIVVDTTPNGVGAQYKPIYLQLQRNAIFQGGEKAEVA---------DISFSALCNYNEALG-----------KKYIRVV 137 (340)
T ss_dssp CSEEEECCSTTHHHHHHHHHHHTTCEEEECTTSCGGGS---------SCEECHHHHHHHHTT-----------CSEEEEC
T ss_pred CCEEEECCCCchhHHHHHHHHHcCCeEEEeCCCCCCCC---------CCEEEcCcchHHHcC-----------CCCcccC
Confidence 99999999999999999875 78999999999998432 246666666544433 5689999
Q ss_pred CChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhcCcc--cccCCcccchhhhhhhhccccCCC
Q 015441 209 GCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIY--SYGVTRHRHVPEIEQGLTGFASSK 286 (406)
Q Consensus 209 gC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni~--py~~~~h~h~pEi~~~l~~i~~~~ 286 (406)
||+||+++++|+||+++ ++++++.++|+|+++.-++ ..++..+|++ ||++..| |.+|+.+.+ +.
T Consensus 138 sCtt~~l~~~lk~L~~~--~gI~~~~~tt~~~~~~~~~------~~~~~~~niip~~~~i~t~-~a~ev~~vl-----p~ 203 (340)
T 1b7g_O 138 SCNTTALLRTICTVNKV--SKVEKVRATIVRRAADQKE------VKKGPINSLVPDPATVPSH-HAKDVNSVI-----RN 203 (340)
T ss_dssp CHHHHHHHHHHHHHHTT--SCEEEEEEEEEEESSCTTC------CSCCCSSCCEESSSSSSCT-HHHHHHTTS-----TT
T ss_pred CcHHHHHHHHHHHHHHh--CCeEEEEEEEEeccCCccc------chHHHHcCCCCCCcCCCCC-chhHHHHhC-----CC
Confidence 99999999999999988 6899999999997753211 1235567887 6777777 678777655 35
Q ss_pred ceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCC-Ccccccc--------ccCC-CcEEEE
Q 015441 287 VTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKG-VVPRTHN--------VRGS-NYCLMN 356 (406)
Q Consensus 287 ~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~-~~P~~~~--------v~g~-n~~~v~ 356 (406)
++|+++|+|||+++||+.+++++|+++++.|||+++|+++ ++|++.++. ..|+|.. .+-+ +...+.
T Consensus 204 l~l~~~a~rVPv~~gh~~~l~v~l~~~~t~eei~~~l~~a----~~v~l~~~~~~l~s~~~~~~~~~~~~rp~~~~~~~~ 279 (340)
T 1b7g_O 204 LDIATMAVIAPTTLMHMHFINITLKDKVEKKDILSVLENT----PRIVLISSKYDAEATAELVEVARDLKRDRNDIPEVM 279 (340)
T ss_dssp CEEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHTC----TTEEEECSSSSCCSHHHHHHHHHHTTCGGGCCCSEE
T ss_pred CcEEEEEEEeccCCeEEEEEEEEECCCCCHHHHHHHHHcC----CCCEeeccccCCCChhHhhhhhhhcCCCcccchhee
Confidence 6799999999999999999999999999999999999976 889887642 3565531 1222 223344
Q ss_pred EEEeC---cCCeEEEEEEehh
Q 015441 357 VFPDR---IPGRAIIISVIDN 374 (406)
Q Consensus 357 ~~~~~---~~~~~~~~~v~DN 374 (406)
+..+. ..+.+.++-++||
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~q 300 (340)
T 1b7g_O 280 IFSDSIYVKDDEVMLMYAVHQ 300 (340)
T ss_dssp EEGGGCEEETTEEEEEEEECT
T ss_pred eehhheEEcCCEEEEEEecCc
Confidence 44332 3467888888885
|
| >1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-32 Score=266.92 Aligned_cols=288 Identities=13% Similarity=0.124 Sum_probs=199.3
Q ss_pred ccEEEEECcccHHHHHHHHHHHcC---CCceEEEEeccCcCC-----ccccccccCcc-------------ccCCCcccc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANH---PYFGIKLMTADRKAG-----QSIGSVFPHLI-------------SQDLPTMVA 121 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~h---p~~elv~l~s~~~~G-----~~i~~v~p~l~-------------~~~~~~~~~ 121 (406)
|+||||+|+ |+|||.++|+|.++ |+++++++++..... .+++++|..|. ++.+.....
T Consensus 1 ~ikVaInGf-GrIGr~v~r~l~~~~~~~~~evvaInd~~~~~~~a~ll~ydS~hg~f~~~v~~~~~~l~v~g~~i~v~~~ 79 (335)
T 1obf_O 1 TIRVAINGY-GRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDAN 79 (335)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECC
T ss_pred CcEEEEECC-CHHHHHHHHHHHhcCCCCCcEEEEEeCCCCHHHHHHHhccCCcCCCCCCCEEEeCCEEEECCEEEEEEEc
Confidence 479999996 99999999999988 899999998731110 12334443332 333332322
Q ss_pred cC--cccCC--CCCEEEEcCCCcchHHHHhh-CCCCCEEEEcCCcccCCCccchhhhcCCC-CCCccchhhhhccccccc
Q 015441 122 VK--DADFS--NVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQP-HIAPDLQKEAVYGLTEIS 195 (406)
Q Consensus 122 ~~--~~~~~--~vDvVF~al~~~~s~~~~~~-l~~G~~VIDlSa~fRl~~~~~~~~~y~~~-~~~Pevn~~~vyglpE~~ 195 (406)
.+ +.+|. ++|+||+|+|.+.+++.++. +++|++.|.+|++. ++ ++| +.+|++|.+. |.
T Consensus 80 ~dp~~~~w~~~gvDiV~estG~f~s~e~a~~h~~aGakkVviSaps--~~--------dvp~~vV~gVN~~~-~~----- 143 (335)
T 1obf_O 80 RNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAPG--GA--------DVDATVVYGVNHGT-LK----- 143 (335)
T ss_dssp SCGGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEESSCC--CT--------TSSEECCTTTSGGG-CC-----
T ss_pred CCcccCCccccCCCEEEEccCccccHHHHHHHHHcCCCEEEECCcc--cC--------CCCceEEccCCHHH-hC-----
Confidence 22 33464 89999999999999999986 47787433456543 32 478 8899888776 32
Q ss_pred hhhccCCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccH-----HHHhcCcccccCCcc-
Q 015441 196 REDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLY-----SEIAEGIYSYGVTRH- 269 (406)
Q Consensus 196 ~~~i~~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~-----~e~~~ni~py~~~~h- 269 (406)
...+|||||+|+|++++++|+||+++ |+|+++.|+|+|++||. ++..|..+. ++++.|++|+..+.-
T Consensus 144 ----~~~~IISNasCTTn~Lap~lk~L~d~--fGI~~~~mTTvha~T~~-q~~~d~~~~d~r~~r~~a~NiIP~~tGaak 216 (335)
T 1obf_O 144 ----STDTVISNASCTTNCLAPLVKPLNDK--LGLQDGLMTTVHAYTNN-QVLTDVYHEDLRRARSATMSMIPTKTGAAA 216 (335)
T ss_dssp ----TTCCEEECCCHHHHHHHHHHHHHHHH--TCEEEEEEEEEEECCTT-SCSSCCCCSSTTTTSCTTTCCEEEECCHHH
T ss_pred ----cCccEEeCCcHHHHHHHHHHHHHHHh--cCeeEEEEEEEchhhhh-hhhhcccccccccccchhhccccCCCcchH
Confidence 12579999999999999999999998 79999999999999999 455554321 355678888865431
Q ss_pred ---cchhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCC--CcEEecCCCCcccc
Q 015441 270 ---RHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHE--EFVKLLEKGVVPRT 344 (406)
Q Consensus 270 ---~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~--~fV~v~~~~~~P~~ 344 (406)
+.+||+.. +++.+|+||||++||+.+++++|+++++.|||+++|+++.++. -.+.+.+++ .-+.
T Consensus 217 av~kVlP~L~g----------kltg~avRVPv~~~s~~dl~v~lek~~t~eei~~~lk~a~~~~lkgil~y~~~~-~vS~ 285 (335)
T 1obf_O 217 AVGDVLPELDG----------KLNGYAIRVPTINVSIVDLSFVAKRNTTVEEVNGILKAASEGELKGILDYNTEP-LVSV 285 (335)
T ss_dssp HHHHHCGGGTT----------SEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSC-CCGG
T ss_pred hHhhhccccCC----------ceEEEEEEeeccceEEEEEEEEECCCCCHHHHHHHHHHhhhcccCCeecccCCc-eEee
Confidence 12333322 6999999999999999999999999999999999999985332 144554432 1111
Q ss_pred ccccCCCc-EEE----EEEEeCcCCeEEEEEEehhhhHhHHHHHHHHHHHH
Q 015441 345 HNVRGSNY-CLM----NVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIM 390 (406)
Q Consensus 345 ~~v~g~n~-~~v----~~~~~~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~ 390 (406)
+-.|..+ +-+ ++. ..+-+-+++--|| -+|=+-+-+..+..|
T Consensus 286 -d~~~~~~ssi~d~~~~~~---~~~~vk~~~WyDN-E~gys~r~~dl~~~~ 331 (335)
T 1obf_O 286 -DYNHDPASSTVDASLTKV---SGRLVKVSSWYDN-EWGFSNRMLDTTVAL 331 (335)
T ss_dssp -GGTTCCCSEEEEGGGCEE---ETTEEEEEEEECT-THHHHHHHHHHHHHH
T ss_pred -eeCCCCccceeccccccc---cCCEEEEEEEeCC-CcchHhHHHHHHHHH
Confidence 2223222 111 111 1234457888899 566677777776665
|
| >2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=271.40 Aligned_cols=287 Identities=15% Similarity=0.166 Sum_probs=198.5
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-----ccccccccCcc-------------ccCCCcccccC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-----QSIGSVFPHLI-------------SQDLPTMVAVK 123 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-----~~i~~v~p~l~-------------~~~~~~~~~~~ 123 (406)
|++||||+|+ |.|||.++|+|.++|+++++++++..... .+++++|..|. ++.+..+.+.+
T Consensus 1 m~ikV~InGf-GrIGr~v~r~l~~~~~~evvaInd~~~~~~~a~ll~yDs~hG~~~~~v~~~~~~l~v~Gk~i~v~~~~d 79 (342)
T 2ep7_A 1 MAIKVGINGF-GRIGRSFFRASWGREEIEIVAINDLTDAKHLAHLLKYDSVHGIFKGSVEAKDDSIVVDGKEIKVFAQKD 79 (342)
T ss_dssp --CEEEEECC-SHHHHHHHHHHTTCTTCEEEEEECSSCHHHHHHHHHEETTTEECSSCEEECSSEEEETTEEEEEECCSS
T ss_pred CceEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCChHHHhhhhhcccccccCCCcEEEcCCEEEECCEEEEEEEcCC
Confidence 4589999996 99999999999999999999998741110 12334443322 23333332233
Q ss_pred cc--cCC--CCCEEEEcCCCcchHHHHhhC-CCCCE--EEEcCCcccCCCccchhhhcCCC-CCCccchhhhhccccccc
Q 015441 124 DA--DFS--NVDAVFCCLPHGTTQEIIKGL-PKSLK--IVDLSADFRLRDVSEYEEWYGQP-HIAPDLQKEAVYGLTEIS 195 (406)
Q Consensus 124 ~~--~~~--~vDvVF~al~~~~s~~~~~~l-~~G~~--VIDlSa~fRl~~~~~~~~~y~~~-~~~Pevn~~~vyglpE~~ 195 (406)
+. +|. ++|+||+|+|.+.+++.++.. ++|++ |||++++ ++| +.+|++|.+. |.
T Consensus 80 p~~~~w~~~gvDiV~estG~~~s~e~a~~hl~aGakkVvisaps~-------------dvp~~vV~gVN~~~-~~----- 140 (342)
T 2ep7_A 80 PSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVIITAPAK-------------NPDITVVLGVNEEK-YN----- 140 (342)
T ss_dssp GGGCCHHHHTCSEEEECSSSCCBHHHHTTTGGGTCSEEEESSCCB-------------SCSEECCTTTSGGG-CC-----
T ss_pred hhhCCccccCCCEEEECCCchhhhhhhHHHHhcCCCEEEecCCCC-------------CCCceEEcCcCHHH-hc-----
Confidence 32 354 899999999999999999874 77874 4444432 478 8899888774 32
Q ss_pred hhhccCCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhccc-----HHHHhcCcccccCCcc-
Q 015441 196 REDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANL-----YSEIAEGIYSYGVTRH- 269 (406)
Q Consensus 196 ~~~i~~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~-----~~e~~~ni~py~~~~h- 269 (406)
. ...+|||||+|+|++++++|+||+++ |+|+++.|+|+|++||+++ ..|..+ .++++.|++|+..+.-
T Consensus 141 ~---~~~~IISNasCTTn~Lap~lk~L~d~--fGI~~~~mTTvha~T~~q~-~~d~p~~d~r~~r~~a~NiIP~~tGaak 214 (342)
T 2ep7_A 141 P---KEHNIISNASCTTNCLAPCVKVLNEA--FGVEKGYMVTVHAYTNDQR-LLDLPHKDFRRARAAAINIVPTTTGAAK 214 (342)
T ss_dssp T---TTCCEEECCCHHHHHHHHHHHHHHHH--HCEEEEEEEEEEECCTTSB-SSSCCCSSTTTTSBGGGCCEEECCCTTG
T ss_pred c---cCCeEEECCChHHHHHHHHHHHHHHH--cCeeEEEEEEEeecccchh-hhcCCcchhhhhhhHhhCccCCCCChHH
Confidence 0 13689999999999999999999998 7999999999999999954 444322 1356789999876542
Q ss_pred ---cchhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCC-CCCHHHHHHHHHHHcCC-------C--CcEEec
Q 015441 270 ---RHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAP-GVTIEDLYQQLKISYEH-------E--EFVKLL 336 (406)
Q Consensus 270 ---~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~-~~s~eev~~~l~~~y~~-------~--~fV~v~ 336 (406)
+.+||+.. +++.+|+||||++||+.+++++|++ +++.|||+++|+++.++ . -.+.+.
T Consensus 215 av~kVlP~L~g----------kltg~avRVPv~~~s~~dltv~lek~~~t~eei~~~lk~a~~~~~~~~~~~lkgil~y~ 284 (342)
T 2ep7_A 215 AIGEVIPELKG----------KLDGTARRVPVPDGSLIDLTVVVNKAPSSVEEVNEKFREAAQKYRESGKVYLKEILQYC 284 (342)
T ss_dssp GGGGTSGGGTT----------TEEEEEEEESCSSCEEEEEEEEESSCCSCHHHHHHHHHHHHHHHHTSCCGGGTTSEEEE
T ss_pred HHHHhhhccCC----------CEEEEEEEecccceEEEEEEEEEcCCCCCHHHHHHHHHHHhcCCccccccccccccccc
Confidence 23344432 5999999999999999999999999 99999999999998543 1 234554
Q ss_pred CCCCccccccccCCCcEEEEEEEeC-----cCCeEEEEEEehhhhHhHHHHHHHHHHHH
Q 015441 337 EKGVVPRTHNVRGSNYCLMNVFPDR-----IPGRAIIISVIDNLVKGASGQALQNLNIM 390 (406)
Q Consensus 337 ~~~~~P~~~~v~g~n~~~v~~~~~~-----~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~ 390 (406)
+++ .-+. +-.|..+-.| .|. ..+-+-+++--|| -.|=+-+-+..+..|
T Consensus 285 ~~~-~vS~-d~~~~~~ssi---~d~~~~~~~~~~vk~~~wyDN-E~gys~r~~dl~~~~ 337 (342)
T 2ep7_A 285 EDP-IVST-DIVGNPHSAI---FDAPLTQVIDNLVHIAAWYDN-EWGYSCRLRDLVIYL 337 (342)
T ss_dssp CSC-CCGG-GGTTCCCSEE---EEGGGCEEETTEEEEEEEECT-THHHHHHHHHHHHHH
T ss_pred CCC-eEee-eECCCCccce---eccccccccCCEEEEEEEECC-CccchhHHHHHHHHH
Confidence 432 1111 2223222111 111 1234457788899 567777777777666
|
| >3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=268.91 Aligned_cols=291 Identities=13% Similarity=0.112 Sum_probs=205.3
Q ss_pred CccEEEEECcccHHHHHHHHHHHcC--CCceEEEEeccCcCC-----ccccccccCccc-------------cCCCcccc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANH--PYFGIKLMTADRKAG-----QSIGSVFPHLIS-------------QDLPTMVA 121 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~h--p~~elv~l~s~~~~G-----~~i~~v~p~l~~-------------~~~~~~~~ 121 (406)
|++||+|+| .|+|||.++|.+.++ +.+|++++++..+.. .+++++|+.|.+ +.+..+++
T Consensus 1 m~~kv~ING-fGrIGr~v~Ra~~~~~~~~~~ivaiNd~~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~i~Gk~I~v~~e 79 (335)
T 3doc_A 1 MAVRVAING-FGRIGRNILRAIVESGRTDIQVVAINDLGPVETNAHLLRYDSVHGRFPKEVEVAGDTIDVGYGPIKVHAV 79 (335)
T ss_dssp CCEEEEEEC-CSHHHHHHHHHHHHTTCCSEEEEEEECSSCHHHHHHHHHEETTTEECSSCCEECSSEEESSSSEEEEECC
T ss_pred CCEEEEEEC-CCcHHHHHHHHHHhccCCCeEEEEEeCCCCHHHHHHHhcccCCCCCCCCeEEEecCEEEECCEEEEEEee
Confidence 578999999 999999999988876 789999999753221 256777776642 33333222
Q ss_pred cC--cccCC--CCCEEEEcCCCcchHHHHhh-CCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccch
Q 015441 122 VK--DADFS--NVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISR 196 (406)
Q Consensus 122 ~~--~~~~~--~vDvVF~al~~~~s~~~~~~-l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~ 196 (406)
.+ ..+|. ++|+||+|+|.+.+++.++. +++|++.|.+|++. . + +.|+.+|++|.+.. .
T Consensus 80 ~dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps-~-d--------~~p~vV~gVN~~~~-~------ 142 (335)
T 3doc_A 80 RNPAELPWKEENVDIALECTGIFTSRDKAALHLEAGAKRVIVSAPA-D-G--------ADLTVVYGVNNDKL-T------ 142 (335)
T ss_dssp SSTTSSCTTTTTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCC-T-T--------CSEECCTTTTGGGC-C------
T ss_pred cccccccccccCCCEEEEccCccCCHHHHHHHHHcCCCEEEECCCC-C-C--------CCCEEecccCHHHh-C------
Confidence 22 23464 89999999999999999976 57888544456542 2 2 25888888877643 1
Q ss_pred hhccCCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhccc-----HHHHhcCcccccCCcc--
Q 015441 197 EDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANL-----YSEIAEGIYSYGVTRH-- 269 (406)
Q Consensus 197 ~~i~~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~-----~~e~~~ni~py~~~~h-- 269 (406)
...+|||||+|+|++++++|+||+++ |+|+++.|+|+|++||+++ .+|.++ .+.++.|+.|...+.-
T Consensus 143 ---~~~~IISNasCTTn~Lap~lk~L~d~--fGI~~g~mTTvha~T~~q~-~~D~p~kd~r~~r~aa~NiIP~~tGaaka 216 (335)
T 3doc_A 143 ---KDHLVISNASCTTNCLAPVAQVLNDT--IGIEKGFMTTIHSYTGDQP-TLDTMHKDLYRARAAALSMIPTSTGAAKA 216 (335)
T ss_dssp ---TTCCEEECCCHHHHHHHHHHHHHHHH--TCEEEEEEEEEEECCTTSC-SSCCCCSSTTTTSCTTSSCEEEECCHHHH
T ss_pred ---ccCCeEecCchhhhhhHHhHHHHHHH--cCEEEEEEEeeeeccchhh-hhcCccccccccccCcceEecCCCchHHH
Confidence 13689999999999999999999998 7999999999999999954 455432 1355678999876642
Q ss_pred --cchhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCC--CcEEecCCCCccccc
Q 015441 270 --RHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHE--EFVKLLEKGVVPRTH 345 (406)
Q Consensus 270 --~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~--~fV~v~~~~~~P~~~ 345 (406)
+.+||+.. +++.+|+|||+++||+.+++++|+++++.|||+++|+++.++. -.+.+.+++ .-+ .
T Consensus 217 v~kVlPeL~g----------kltg~avRVPv~~~s~~dlt~~lek~~t~eei~~~lk~A~~g~lkgil~yte~~-~VS-~ 284 (335)
T 3doc_A 217 VGLVLPELKG----------KLDGVAIRVPTPNVSVVDLTFIAKRETTVEEVNNAIREAANGRLKGILGYTDEK-LVS-H 284 (335)
T ss_dssp HHHHSGGGTT----------CEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHTTTTTTTEEEECSC-CCG-G
T ss_pred HHHhccccCC----------CEEEEEEEeccccccceEEEEEECCCCCHHHHHHHHHHhhcCCcCCeeEEEcCC-eEe-e
Confidence 23455543 6999999999999999999999999999999999999985442 134454432 111 1
Q ss_pred cccCCCc-EEE----EEEEeCcCCeEEEEEEehhhhHhHHHHHHHHHHHHh
Q 015441 346 NVRGSNY-CLM----NVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIML 391 (406)
Q Consensus 346 ~v~g~n~-~~v----~~~~~~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~ 391 (406)
+-.|..+ +-+ ++.. ..+-+-+++--|| -.|=+-+-+..+..|.
T Consensus 285 Df~~~~~ssi~d~~~t~~~--~~~~vk~~~WYDN-E~gys~r~~dl~~~~~ 332 (335)
T 3doc_A 285 DFNHDSHSSVFHTDQTKVM--DGTMVRILSWYDN-EWGFSSRMSDTAVALG 332 (335)
T ss_dssp GGTTCCCSEEEEGGGCEEE--TTTEEEEEEEECT-THHHHHHHHHHHHHHH
T ss_pred eeCCCCCccccCchhhEEE--cCCEEEEEEEEcC-ccchHHHHHHHHHHHH
Confidence 2222222 111 1111 1233447777899 4677777777776664
|
| >3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.8e-31 Score=264.31 Aligned_cols=288 Identities=15% Similarity=0.177 Sum_probs=201.7
Q ss_pred cCCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-----ccccccccCcc-------------ccCCCcccc
Q 015441 60 SEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-----QSIGSVFPHLI-------------SQDLPTMVA 121 (406)
Q Consensus 60 ~~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-----~~i~~v~p~l~-------------~~~~~~~~~ 121 (406)
+.|++||||+|+ |.|||.++|+|.++ +++++++.+..+.. .+++++|+.|. ++.+..++.
T Consensus 18 ~~~~~kVaInGf-GrIGr~vlr~l~e~-~~~ivaIndl~d~~~~a~llkydS~hG~f~~~v~~~~~~l~i~Gk~I~v~~~ 95 (356)
T 3hja_A 18 GPGSMKLAINGF-GRIGRNVFKIAFER-GIDIVAINDLTDPKTLAHLLKYDSTFGVYNKKVESRDGAIVVDGREIKIIAE 95 (356)
T ss_dssp ----CEEEEECC-SHHHHHHHHHHHHT-TCEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECC
T ss_pred CCCCeEEEEECC-CHHHHHHHHHHHHC-CCCEEEEeCCCCHHHhhhhhccccCCCCCCCCEEEcCCEEEECCEEEEEEEc
Confidence 355689999997 99999999999887 79999998753211 23466666554 233332222
Q ss_pred cCcc--cC--CCCCEEEEcCCCcch----HHHHhh-CC-CCCE--EEEcCCcccCCCccchhhhcCCCCCCccchhhhhc
Q 015441 122 VKDA--DF--SNVDAVFCCLPHGTT----QEIIKG-LP-KSLK--IVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVY 189 (406)
Q Consensus 122 ~~~~--~~--~~vDvVF~al~~~~s----~~~~~~-l~-~G~~--VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vy 189 (406)
.++. +| .++|+||+|+|.+.+ ++.++. ++ +|++ |||+++. + ++|+++|++|.+..-
T Consensus 96 ~dp~~i~w~~~gvDiV~esTG~f~s~~~~~e~a~~hl~~aGAkkVVIsaps~----d--------~vp~vV~gVN~~~~~ 163 (356)
T 3hja_A 96 RDPKNLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVNHAGAKKVILTVPAK----D--------EIKTIVLGVNDHDIN 163 (356)
T ss_dssp SSGGGCCHHHHTCSEEEECSSSCCSSCCTTCCGGGGTTTSCCSEEEESSCCS----S--------CCEECCTTTSGGGCC
T ss_pred CChhhCCccccCCCEEEEecccccccchhHHHHHHHHHhCCCeEEEECCCCC----C--------CCCEEeccCCHHHcC
Confidence 2232 34 389999999999999 888875 67 8875 7887762 2 368888888776431
Q ss_pred cccccchhhccCCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhccc-----HHHHhcCcccc
Q 015441 190 GLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANL-----YSEIAEGIYSY 264 (406)
Q Consensus 190 glpE~~~~~i~~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~-----~~e~~~ni~py 264 (406)
...+|||||+|+|++++++|+||+++ |+|+++.|+|+|++||+++ ..|.++ .+.++.|++|+
T Consensus 164 ----------~~~~IISNaSCTTn~Lap~lkvL~d~--fGI~~g~mTTvhA~T~~Q~-~~D~p~kd~r~~r~aa~NIIP~ 230 (356)
T 3hja_A 164 ----------SDLKAVSNASCTTNCLAPLAKVLHES--FGIEQGLMTTVHAYTNDQR-ILDLPHSDLRRARAAALSIIPT 230 (356)
T ss_dssp ----------TTCCEEECCCHHHHHHHHHHHHHHHH--HCEEEEEEEEEEECCTTSB-SSSCCCSSTTTTSBTTTSCEEE
T ss_pred ----------cCccEEECCccchhhhhHhHHHHHHh--cCeEEEEEEEEEecccccc-cccCcccccccccccccEEEcC
Confidence 13589999999999999999999998 7999999999999999954 444433 13557899998
Q ss_pred cCCccc----chhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEe-CCCCCHHHHHHHHHHHcCCC---CcEEec
Q 015441 265 GVTRHR----HVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEM-APGVTIEDLYQQLKISYEHE---EFVKLL 336 (406)
Q Consensus 265 ~~~~h~----h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l-~~~~s~eev~~~l~~~y~~~---~fV~v~ 336 (406)
..+.-+ .+||+.. +++.+|+|||+++||+.+++++| +++++.|||+++|+++.++. -.+.+.
T Consensus 231 ~tGaakav~kVlPeL~g----------kltg~avRVPv~~~s~~dlt~~l~ek~~t~eeI~~~lk~Aa~g~~lkgil~yt 300 (356)
T 3hja_A 231 STGAAKAVGLVLPELKG----------KLNGTSMRVPVPTGSIVDLTVQLKKKDVTKEEINSVLRKASETPELKGILGYT 300 (356)
T ss_dssp ECCTTTTHHHHCGGGTT----------TEEEEEEEESCSSCEEEEEEEEESCTTCCHHHHHHHHHHHHHSTTTTTTEEEE
T ss_pred CCchHHHHHHhccccCC----------cEEEEEEEcCCCccEeEEEEEEEccCCCCHHHHHHHHHHHhcCchhcccccee
Confidence 766432 3455543 69999999999999999999999 99999999999999986654 234554
Q ss_pred CCCCccccccccCCCcEEEEEEEeC------cCCeEEEEEEehhhhHhHHHHHHHHHHHH
Q 015441 337 EKGVVPRTHNVRGSNYCLMNVFPDR------IPGRAIIISVIDNLVKGASGQALQNLNIM 390 (406)
Q Consensus 337 ~~~~~P~~~~v~g~n~~~v~~~~~~------~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~ 390 (406)
+++ .-+ .+-.|..+-.| .|. ..+-+-+++--|| -.|=+-+-|..+..|
T Consensus 301 e~~-~VS-~Df~~~~~ssi---~d~~~t~~~~~~~vk~~~WYDN-E~Gys~r~vdl~~~~ 354 (356)
T 3hja_A 301 EDP-IVS-SDIKGNSHSSI---VDGLETMVLENGFAKILSWYDN-EFGYSTRVVDLAQKL 354 (356)
T ss_dssp CSC-CCG-GGGTTCCCSEE---EEGGGCEECSTTEEEEEEEECT-THHHHHHHHHHHHHH
T ss_pred cCC-eEe-eeccCCCCceE---EcCcCCEEEcCCEEEEEEEECC-ccchHHHHHHHHHHH
Confidence 432 111 12223322111 111 1234457778899 466666666666554
|
| >4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural genomics, national institute of allergy AN infectious diseases; 2.55A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-32 Score=269.92 Aligned_cols=292 Identities=12% Similarity=0.132 Sum_probs=199.4
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-----ccccccccCccc-------------cCCCcccccC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-----QSIGSVFPHLIS-------------QDLPTMVAVK 123 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-----~~i~~v~p~l~~-------------~~~~~~~~~~ 123 (406)
.|+||||+| .|+|||.++|.+.+++.+|++++++..... .+++++|+.|.+ +.+..+++.+
T Consensus 3 ~~~kv~ING-fGrIGr~v~Ra~~~~~~~~ivaINd~~d~~~~a~llkyDS~hG~f~~~v~~~~~~l~inGk~I~v~~e~d 81 (345)
T 4dib_A 3 AMTRVAING-FGRIGRMVFRQAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKMIRLLNNRD 81 (345)
T ss_dssp -CCEEEEEC-CSHHHHHHHHHHTTCSSSEEEEEECSSCHHHHHHHHHEETTTEECSSCEEECSSEEEETTEEEEEECCSC
T ss_pred ccEEEEEEC-CCcHHHHHHHHHHhCCCceEEEEcCCCCHHHHHHHhcccCCCCCCCCcEEEcCCEEEECCEEEEEeecCC
Confidence 368999999 999999999999988999999999753221 257777777652 2333222222
Q ss_pred c--ccCC--CCCEEEEcCCCcchHHHHhh-CCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhh
Q 015441 124 D--ADFS--NVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISRED 198 (406)
Q Consensus 124 ~--~~~~--~vDvVF~al~~~~s~~~~~~-l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~ 198 (406)
+ .+|. ++|+||+|+|.+.+++.++. +++|++.|.+|++. ++ ++|+++|++|.+..-.
T Consensus 82 p~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISaps--~~--------d~p~vV~gVN~~~~~~-------- 143 (345)
T 4dib_A 82 PKELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAKKVILTAPG--KN--------EDVTIVVGVNEDQLDI-------- 143 (345)
T ss_dssp GGGSCTTTTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCC--BS--------CSEECCTTTTGGGCCT--------
T ss_pred hhhCCccccCccEEEEeccCcCCHHHHHHHHHCCCCEEEECCCC--CC--------CCCEEEecCCHHHcCc--------
Confidence 2 2454 89999999999999999976 67887444455543 23 3688888887764310
Q ss_pred ccCCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccH-----HHHhcCcccccCCcc----
Q 015441 199 IKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLY-----SEIAEGIYSYGVTRH---- 269 (406)
Q Consensus 199 i~~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~-----~e~~~ni~py~~~~h---- 269 (406)
...+|||||+|+|++++++|+||+++ |+|+++.|+|+|++||++ +..|.++. +.++.|+.|...+.-
T Consensus 144 -~~~~IISNaSCTTn~Lap~lkvL~d~--fGI~~g~mTTvhA~T~~Q-~~~D~p~kd~r~~r~aa~NIIP~~tGaakav~ 219 (345)
T 4dib_A 144 -TKHTVISNASCTTNCLAPVVKVLDEQ--FGIENGLMTTVHAYTNDQ-KNIDNPHKDLRRARACGQSIIPTTTGAAKALA 219 (345)
T ss_dssp -TTCSEEECCCHHHHHHHHHHHHHHHH--HCEEEEEEEEEECC--------------CCTTSCTTTCCEEECCTHHHHHH
T ss_pred -ccCeEEECCchhhhhhHHHHHHHHHh--cCeEEEEEEeeeeccCCc-eeccccccccccchhhhhceecCCCchHHHHh
Confidence 13689999999999999999999998 799999999999999985 44554331 245678888876542
Q ss_pred cchhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCC--CcEEecCCCCccccccc
Q 015441 270 RHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHE--EFVKLLEKGVVPRTHNV 347 (406)
Q Consensus 270 ~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~--~fV~v~~~~~~P~~~~v 347 (406)
+.+||+.. +++.+|+|||+++||+.+++++|+++++.|||+++|+++.++. -.+.+.+++ .-. .+-
T Consensus 220 kVlPeL~g----------kltg~avRVPv~~~s~~dlt~~lek~~t~eei~~~lk~As~g~lkgil~yte~~-~VS-~Df 287 (345)
T 4dib_A 220 KVLPHLNG----------KLHGMALRVPTPNVSLVDLVVDVKRDVTVEAINDAFKTVANGALKGIVEFSEEP-LVS-IDF 287 (345)
T ss_dssp HHCGGGTT----------TEEEEEEECCCSSEEEEEEEEEESSCCCHHHHHHHHHHHHTTTTTTTEEEECSC-CCG-GGG
T ss_pred hhccccCC----------cEEEEEEEccCcccEEEEEEEEECCCCCHHHHHHHHHHhhcCcccceeeeEcCc-Eee-eec
Confidence 23455543 5899999999999999999999999999999999999986542 134554432 111 122
Q ss_pred cCCCc-EEE----EEEEeCcCCeEEEEEEehhhhHhHHHHHHHHHHHHh
Q 015441 348 RGSNY-CLM----NVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIML 391 (406)
Q Consensus 348 ~g~n~-~~v----~~~~~~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~ 391 (406)
.|..+ +-+ +... ..+-+-+++--|| -.|=+-+-+..+..|.
T Consensus 288 ~~~~~ssi~d~~~t~~~--~~~~vk~~~WYDN-E~Gys~r~~dl~~~~~ 333 (345)
T 4dib_A 288 NTNTHSAIIDGLSTMVM--GDRKVKVLAWYDN-EWGYSRRVVDLVTLVV 333 (345)
T ss_dssp TTCCCSEEEEGGGCEEE--TTTEEEEEEEEET-THHHHHHHHHHHHHHH
T ss_pred CCCCcchhhhhhccEEE--CCCEEEEEEEECC-CcchHHHHHHHHHHHH
Confidence 22222 111 1111 1234457777899 4676777777776664
|
| >3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-31 Score=265.07 Aligned_cols=298 Identities=10% Similarity=0.131 Sum_probs=209.1
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccC-cCC-----ccccccccCccc-------------cCCCcccc
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR-KAG-----QSIGSVFPHLIS-------------QDLPTMVA 121 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~-~~G-----~~i~~v~p~l~~-------------~~~~~~~~ 121 (406)
.+|+||+|+| .|+||+.++|.+.+++ ++++++++.. +.. .+++++|+.|.+ +.+..+++
T Consensus 5 ~~~~kvgInG-FGRIGrlv~R~~~~~~-veivainDp~~d~~~~a~l~~yDS~hG~f~~~v~~~~~~l~i~Gk~I~v~~e 82 (346)
T 3h9e_O 5 ARELTVGING-FGRIGRLVLRACMEKG-VKVVAVNDPFIDPEYMVYMFKYDSTHGRYKGSVEFRNGQLVVDNHEISVYQC 82 (346)
T ss_dssp -CCCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECC
T ss_pred CCeeEEEEEC-CChHHHHHHHHHHhCC-CEEEEEeCCCCChhHhcccccccCCCCCCCCcEEEcCCEEEECCEEEEEEec
Confidence 4568999999 9999999999988777 9999998742 211 257777777652 33333333
Q ss_pred cCcc--cCC--CCCEEEEcCCCcchHHHHhh-CCCCC--EEEEcCCcccCCCccchhhhcCCCCCCccchhhhhcccccc
Q 015441 122 VKDA--DFS--NVDAVFCCLPHGTTQEIIKG-LPKSL--KIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEI 194 (406)
Q Consensus 122 ~~~~--~~~--~vDvVF~al~~~~s~~~~~~-l~~G~--~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~ 194 (406)
.+++ +|. ++|+||+|+|.+.+++.++. +++|+ +|||++++ ++|+++|++|.+..-.
T Consensus 83 ~dp~~i~W~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkVVIsaps~-------------d~plvV~gVN~~~~~~---- 145 (346)
T 3h9e_O 83 KEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRVVISAPSP-------------DAPMFVMGVNENDYNP---- 145 (346)
T ss_dssp SSGGGCCGGGGTSCEEEECSSSCCSHHHHHHHHHTTCSEEEESSCCS-------------SSCBCCTTTTGGGCCT----
T ss_pred CChhhCCcccccccEEEEeccccCCHHHHHHHHHcCCCEEEECCCCC-------------CCCeeCcccCHHHcCc----
Confidence 3333 343 89999999999999999876 57887 78888764 3688898888765310
Q ss_pred chhhccCCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhccc------HHHHhcCcccccCCc
Q 015441 195 SREDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANL------YSEIAEGIYSYGVTR 268 (406)
Q Consensus 195 ~~~~i~~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~------~~e~~~ni~py~~~~ 268 (406)
.+.+|||||+|+|++++++|+||+++ |+|+++.|+|+|++||.++ ..|..+ .+.++.|++|...+.
T Consensus 146 -----~~~~IISNasCTTn~Lap~lkvL~d~--fGI~~g~mTTvhA~T~tQ~-~~Dg~~~kd~r~~r~aa~NiIP~~tGa 217 (346)
T 3h9e_O 146 -----GSMNIVSNASCTTNCLAPLAKVIHER--FGIVEGLMTTVHSYTATQK-TVDGPSRKAWRDGRGAHQNIIPASTGA 217 (346)
T ss_dssp -----TTCSEEECCCHHHHHHHHHHHHHHHH--HCEEEEEEEEEEECCTTSB-SSSCCCTTSGGGGSBTTTCCEEECCHH
T ss_pred -----ccCCEEECCcchhhhHHHHHHHHHHH--hCeeEEEEeeeeeccCccc-cccCCCCCCccccccceeeeecccCch
Confidence 14689999999999999999999998 7999999999999999864 344322 135677888887654
Q ss_pred c----cchhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCC--CcEEecCCCCcc
Q 015441 269 H----RHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHE--EFVKLLEKGVVP 342 (406)
Q Consensus 269 h----~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~--~fV~v~~~~~~P 342 (406)
. +.+||+.. +++.+|+||||++||+.+++++|+++++.|||+++|+++.++. -.+.+.+++ .-
T Consensus 218 akavgkViPeL~g----------kltg~avRVPv~~~s~~dlt~~lek~~t~eei~~~lk~A~~g~lkgil~yte~~-~V 286 (346)
T 3h9e_O 218 AKAVTKVIPELKG----------KLTGMAFRVPTPDVSVVDLTCRLAQPAPYSAIKEAVKAAAKGPMAGILAYTEDE-VV 286 (346)
T ss_dssp HHHHHHHSGGGTT----------TEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSC-CC
T ss_pred HHhhheechhhcC----------cEEEEEEEcccccceeEEEEEEECCcCCHHHHHHHHHHhccCccCCceeEEcCC-eE
Confidence 3 23455533 6999999999999999999999999999999999999985432 134444332 11
Q ss_pred ccccccCCCc-EEE----EEEEeCcCCeEEEEEEehhhhHhHHHHHHHHHHHHhCCCcccCCCC
Q 015441 343 RTHNVRGSNY-CLM----NVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMLGFPENTGLLY 401 (406)
Q Consensus 343 ~~~~v~g~n~-~~v----~~~~~~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~g~~e~~gl~~ 401 (406)
.. +-.|..+ +-+ ++..+ .+-+-+++--|| -.|=+-+-|..|..|.. .|..||.+
T Consensus 287 S~-Df~~~~~ssi~d~~~~~~~~--~~~vk~~~WYDN-E~gys~r~~dl~~~~~~-~~~~~~~~ 345 (346)
T 3h9e_O 287 ST-DFLGDTHSSIFDAKAGIALN--DNFVKLISWYDN-EYGYSHRVVDLLRYMFS-RDAENLYF 345 (346)
T ss_dssp GG-GGTTCCCSEEEETTTCEEEE--TTEEEEEEEECT-THHHHHHHHHHHHHHHH-HHCC----
T ss_pred ee-ccCCCCCceeEcccccEEec--CCEEEEEEEECC-CcchHHHHHHHHHHHHh-hhccCccc
Confidence 11 2222222 111 11111 233447777899 47777778888876654 45667654
|
| >3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-31 Score=261.40 Aligned_cols=288 Identities=13% Similarity=0.175 Sum_probs=203.5
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccC-cCC-----ccccccccCccc-------------cCCCcccccC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR-KAG-----QSIGSVFPHLIS-------------QDLPTMVAVK 123 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~-~~G-----~~i~~v~p~l~~-------------~~~~~~~~~~ 123 (406)
|+||+|+| .|+|||.++|.+.+++.+|++++++.. +.. .+++++|+.|.+ +.+..+++.+
T Consensus 1 ~~kv~ING-fGrIGr~v~R~~~~~~~~~ivaiNd~~~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~i~Gk~I~v~~e~d 79 (332)
T 3pym_A 1 MVRVAING-FGRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYAGEVSHDDKHIIVDGKKIATYQERD 79 (332)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHSTTCEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSS
T ss_pred CeEEEEEC-CCcHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHhcccCCCCCCCCcEEEcCCEEEECCEEEEEEeecc
Confidence 57999999 999999999999888899999999742 221 357777777652 2333222222
Q ss_pred c--ccCC--CCCEEEEcCCCcchHHHHhh-CCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhh
Q 015441 124 D--ADFS--NVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISRED 198 (406)
Q Consensus 124 ~--~~~~--~vDvVF~al~~~~s~~~~~~-l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~ 198 (406)
+ .+|. ++|+||+|+|.+.+++.+++ +++|++.|.+|++. . ++|+.+|++|.+.. .
T Consensus 80 p~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps--~---------d~p~vV~gVN~~~~-~-------- 139 (332)
T 3pym_A 80 PANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVITAPS--S---------TAPMFVMGVNEEKY-T-------- 139 (332)
T ss_dssp GGGSCTTTTTCSEEEECSSSSCSHHHHHHHHHTTCSEEEESSCC--S---------SSCBCCTTTTGGGC-C--------
T ss_pred cccCCccccCccEEEEecccccCHHHHHHHHHcCCCEEEECCCC--C---------CCCeEeeccchhhc-C--------
Confidence 2 2454 89999999999999999976 67888544456543 2 36888888877643 1
Q ss_pred ccCCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhccc------HHHHhcCcccccCCcc---
Q 015441 199 IKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANL------YSEIAEGIYSYGVTRH--- 269 (406)
Q Consensus 199 i~~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~------~~e~~~ni~py~~~~h--- 269 (406)
...+|||||+|+|++++++|+||+++ |+|+++.|+|+|++||+++ .+|..+ .+.++.|+.|...+.-
T Consensus 140 -~~~~IISnasCTTn~Lap~lkvL~d~--fGI~~g~mTTvha~T~~Q~-~vDg~~~kd~r~~r~aa~NiIP~~tGaakav 215 (332)
T 3pym_A 140 -SDLKIVSNASCTTNCLAPLAKVINDA--FGIEEGLMTTVHSLTATQK-TVDGPSHKDWRGGRTASGNIIPSSTGAAKAV 215 (332)
T ss_dssp -TTCCEEECCCHHHHHHHHHHHHHHHH--HCEEEEEEEEEEECCTTSC-SSSCCCTTCTGGGSCGGGCCEEEECSHHHHH
T ss_pred -ccccEEecCcchhhhhHHHHHHHHHh--cCeEEEEEEEEeeccccch-hccCCCcccCccccchhhcccCCCCChHHHH
Confidence 13689999999999999999999998 7999999999999999853 444332 1355678999876642
Q ss_pred -cchhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCC--CcEEecCCCCcccccc
Q 015441 270 -RHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHE--EFVKLLEKGVVPRTHN 346 (406)
Q Consensus 270 -~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~--~fV~v~~~~~~P~~~~ 346 (406)
+.+||+.. +++.+|+|||+++||+.+++++|+++++.|||+++|+++.++. -.+.+.+++ .-+ .+
T Consensus 216 ~kVlPeL~g----------kltg~avRVPv~~~s~~dlt~~lek~~t~eei~~~lk~a~~g~lkgil~yte~~-~VS-~D 283 (332)
T 3pym_A 216 GKVLPELQG----------KLTGMAFRVPTVDVSVVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDA-VVS-SD 283 (332)
T ss_dssp HHHSGGGTT----------SEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSC-CCG-GG
T ss_pred HHhhhhhcC----------CEEEEEEEcCCCCcEeeEEEEEECCcCCHHHHHHHHHHhccCccCceeEEEcCC-eEe-ec
Confidence 23455543 6999999999999999999999999999999999999985432 134454432 111 12
Q ss_pred ccCCCc-EEE----EEEEeCcCCeEEEEEEehhhhHhHHHHHHHHHHHH
Q 015441 347 VRGSNY-CLM----NVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIM 390 (406)
Q Consensus 347 v~g~n~-~~v----~~~~~~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~ 390 (406)
-.|..+ +-+ +...+ .+-+-+++--|| -.|=+-+-+..+..|
T Consensus 284 f~~~~~ssi~d~~~~~~~~--~~~vk~~~WYDN-E~gys~r~~dl~~~~ 329 (332)
T 3pym_A 284 FLGDSHSSIFDASAGIQLS--PKFVKLVSWYDN-EYGYSTRVVDLVEHV 329 (332)
T ss_dssp GTTCCCSEEEEGGGCEEEE--TTEEEEEEEECT-THHHHHHHHHHHHHH
T ss_pred cCCCCcceEEccccccccC--CCEEEEEEEECC-ccchHHHHHHHHHHH
Confidence 222222 111 11111 233447777899 466666666666655
|
| >3v1y_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosol; rossmann fold; HET: NAD; 1.86A {Oryza sativa japonica group} PDB: 3e5r_O* 3e6a_O | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-31 Score=261.82 Aligned_cols=289 Identities=11% Similarity=0.149 Sum_probs=203.5
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEecc-CcCC-----ccccccccCccc---------------cCCCcccc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD-RKAG-----QSIGSVFPHLIS---------------QDLPTMVA 121 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~-~~~G-----~~i~~v~p~l~~---------------~~~~~~~~ 121 (406)
++||||+| .|+|||.++|.+.+++.+|++++++. .+.. .+++++|+.|.+ +.+..++.
T Consensus 3 ~~kv~ING-fGrIGr~v~R~~~~~~~~~ivaiNd~~~d~~~~a~l~kyDS~hG~f~~~~v~~~~~~~l~i~Gk~I~v~~e 81 (337)
T 3v1y_O 3 KIKIGING-FGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGI 81 (337)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTCSSEEEEEEECTTSCHHHHHHHHHCCTTTCCCCSSCEEEEETTEEEETTEEEEEECC
T ss_pred ceEEEEEC-CChHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHhhhccCCCcccCceEEEcCCcEEEECCEEEEEEEe
Confidence 47999999 99999999999998899999999975 2211 256777777654 11222222
Q ss_pred cCcc--cCC--CCCEEEEcCCCcchHHHHhh-CCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccch
Q 015441 122 VKDA--DFS--NVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISR 196 (406)
Q Consensus 122 ~~~~--~~~--~vDvVF~al~~~~s~~~~~~-l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~ 196 (406)
.++. +|. ++|+||+|+|.+.+++.+++ +++|++.|.+|++. . ++|+.+|++|.+.. .
T Consensus 82 ~dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps--~---------d~p~vV~gVN~~~~-~------ 143 (337)
T 3v1y_O 82 RNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPS--K---------DAPMFVCGVNEDKY-T------ 143 (337)
T ss_dssp SSGGGCCHHHHTCCEEEECSSSCCSHHHHTHHHHTTCCEEEESSCC--S---------SSCBCCTTTTGGGC-C------
T ss_pred cCcccCCccccCCcEEEEeccccCCHHHHHHHHHcCCCEEEECCCC--C---------CCCeECCCCCHHHc-C------
Confidence 2222 354 89999999999999999976 67887534455542 1 36888888887653 1
Q ss_pred hhccCCcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhccc------HHHHhcCcccccCCcc-
Q 015441 197 EDIKNARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANL------YSEIAEGIYSYGVTRH- 269 (406)
Q Consensus 197 ~~i~~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~------~~e~~~ni~py~~~~h- 269 (406)
.+.+|||||+|+|++++++|+||+++ |+|+++.|+|+|++||+|+. .|..+ .++++.|+.|+..+.-
T Consensus 144 ---~~~~IISnasCTTn~Lap~lkvL~d~--fGI~~g~mTTvha~T~~q~~-~Dg~~~kd~r~~r~~a~NiIP~~tGaak 217 (337)
T 3v1y_O 144 ---SDIDIVSNASCTTNCLAPLAKVIHDN--FGIIEGLMTTVHAITATQKT-VDGPSSKDWRGGRAASFNIIPSSTGAAK 217 (337)
T ss_dssp ---TTCCEEECCCHHHHHHHHHHHHHHHH--HCEEEEEEEEEECCCTTSBS-SSCCCTTCGGGGSBGGGCCEEEECCHHH
T ss_pred ---CCCcEEecCchhhhhHHHHHHHHHHh--cCeEEEEEeeeeeccchhhh-ccCCccccccccccccceeecCCCChHH
Confidence 13689999999999999999999998 79999999999999999753 44332 1356789999876542
Q ss_pred ---cchhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCC--CcEEecCCCCcccc
Q 015441 270 ---RHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHE--EFVKLLEKGVVPRT 344 (406)
Q Consensus 270 ---~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~--~fV~v~~~~~~P~~ 344 (406)
+.+||+.. +++.+|+|||+++||+.+++++|+++++.|||+++|+++.++. -.+.+.+++ .-+
T Consensus 218 av~kVlPeL~g----------kltg~avRVPv~~~s~~dlt~~lek~~t~eei~~~lk~a~~g~lkgil~yte~~-~VS- 285 (337)
T 3v1y_O 218 AVGKVLPDLNG----------KLTGMSFRVPTVDVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEED-LVS- 285 (337)
T ss_dssp HHHHHSGGGTT----------SEEEEEEECSCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTBTTEEEECSC-CCG-
T ss_pred HHHHhccccCC----------cEEEEEEEcCCCCcEEEEEEEEECCCCcHHHHHHHHHHhccCccCCeeEEEcCC-EEe-
Confidence 23455433 6999999999999999999999999999999999999985432 134444432 111
Q ss_pred ccccCCCc-EEE----EEEEeCcCCeEEEEEEehhhhHhHHHHHHHHHHHHh
Q 015441 345 HNVRGSNY-CLM----NVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIML 391 (406)
Q Consensus 345 ~~v~g~n~-~~v----~~~~~~~~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~ 391 (406)
.+-.|..+ +-+ ++..+ .+-+-+++--|| -.|=+-+-+..+..|.
T Consensus 286 ~Df~~~~~ssi~d~~~~~~~~--~~~vk~~~WYDN-E~gys~r~~dl~~~~~ 334 (337)
T 3v1y_O 286 TDFVGDSRSSIFDAKAGIALN--DNFVKLVAWYDN-EWGYSNRVIDLIRHMA 334 (337)
T ss_dssp GGGTTCCCSEEEETTTCEEEE--TTEEEEEEEECT-THHHHHHHHHHHHHHH
T ss_pred eccCCCCcceEEecccCeEEC--CCEEEEEEEECC-ccchHHHHHHHHHHHh
Confidence 12222222 111 11111 233457777899 4677777777776664
|
| >3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso; irreversible inhibitor, protein-ligand complex,X-RAY, glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A* 1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-31 Score=264.18 Aligned_cols=292 Identities=13% Similarity=0.100 Sum_probs=205.5
Q ss_pred CccEEEEECcccHHHHHHHHH----HHcCCCceEEEEecc-CcCC-----ccccccccCccc------------------
Q 015441 62 KQVRIGLLGASGYTGAEIVRL----LANHPYFGIKLMTAD-RKAG-----QSIGSVFPHLIS------------------ 113 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrl----L~~hp~~elv~l~s~-~~~G-----~~i~~v~p~l~~------------------ 113 (406)
|++||||+| .|+|||.++|. +.+++.+|++++++. .+.. .+++++|+.|.+
T Consensus 1 m~~kv~ING-FGrIGr~v~Ra~~~~~~~~~~~~vvaINd~~~d~~~~a~llkyDS~hG~f~~~v~~~~~~~~~~~~~~l~ 79 (359)
T 3ids_C 1 MPIKVGING-FGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLV 79 (359)
T ss_dssp CCEEEEEEC-TTHHHHHHHHHHHHTTCBTTTEEEEEEECSSCCHHHHHHHHHEETTTEECSSCEEEECSCTTSSSCCEEE
T ss_pred CceEEEEEC-CChHHHHHHHHhHHHHhcCCCcEEEEEecCCCCHHHHHHHhcccCCCCCEeeEEEecccccccCCCCEEE
Confidence 568999999 99999999999 456788999999973 2211 256666665542
Q ss_pred ---cCCCccc-ccCcc--cCC--CCCEEEEcCCCcchHHHHhh-CCCCCEEEEcCCcccCCCccchhhhcCCCCCCccch
Q 015441 114 ---QDLPTMV-AVKDA--DFS--NVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQ 184 (406)
Q Consensus 114 ---~~~~~~~-~~~~~--~~~--~vDvVF~al~~~~s~~~~~~-l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn 184 (406)
+.+..++ ..++. +|. ++|+||+|+|.+.+++.++. +++|++.|.+|++. ++ ++|+++|++|
T Consensus 80 inGk~I~v~~~e~dp~~i~w~~~gvDiVlesTG~f~s~e~A~~hl~aGAkkViISaps--~~--------d~p~vV~gVN 149 (359)
T 3ids_C 80 VNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPA--SG--------GAKTLVMGVN 149 (359)
T ss_dssp ETTEEEEECCCCSSTTTSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCCEEEESSCC--BS--------SCEECCTTTT
T ss_pred ECCEEEEEEEccCCcccCCccccCccEEEEeccccCCHHHHHHHHHcCCCEEEECCCC--CC--------CCCeEEeccC
Confidence 1222222 22223 353 89999999999999999976 68888655567654 22 3688888887
Q ss_pred hhhhccccccchhhccCCcEEecCCChHHHHHHHHHHH-HHccCCCcceEEEEEeeccCccCcchhhcccH------HHH
Q 015441 185 KEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPL-IQANLIQYRNIIIDAKSGVSGAGRGAKEANLY------SEI 257 (406)
Q Consensus 185 ~~~vyglpE~~~~~i~~~~iVanPgC~tta~~l~L~PL-~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~------~e~ 257 (406)
.+..-. ...+|||||+|+|++++++|+|| +++ |+|+++.|+|+|++||.+ +.+|..+. +.+
T Consensus 150 ~~~~~~---------~~~~IISNaSCTTn~Lap~lkvL~~d~--fGI~~g~mTTvha~T~tQ-~~vD~~~~kd~r~~r~a 217 (359)
T 3ids_C 150 HHEYNP---------SEHHVVSNASCTTNCLAPIVHVLVKEG--FGVQTGLMTTIHSYTATQ-KTVDGVSVKDWRGGRAA 217 (359)
T ss_dssp GGGCCT---------TTCSEEECCCHHHHHHHHHHHHHHHTT--CCCSEEEEEEEEECCTTS-BSSSCCCTTCTGGGSBG
T ss_pred HHHcCC---------CCCCEEECCchHhhhHHHhhhhhhhcc--CCeEEEEEeeeeeccchh-hhhcCCccccccccccC
Confidence 764310 13689999999999999999999 988 899999999999999985 44554331 346
Q ss_pred hcCcccccCCcc----cchhhhhhhhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCC--C
Q 015441 258 AEGIYSYGVTRH----RHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHE--E 331 (406)
Q Consensus 258 ~~ni~py~~~~h----~h~pEi~~~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~--~ 331 (406)
+.|+.|...+.- +.+||+.. +++.+|+|||+++||+.+++++|+++++.|||+++|+++.++. -
T Consensus 218 a~NiIP~~tGaakav~kVlPeL~g----------kltg~avRVPv~~vs~~dlt~~lek~~t~eei~~~lk~A~~g~lkg 287 (359)
T 3ids_C 218 AVNIIPSTTGAAKAVGMVIPSTQG----------KLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTYMKG 287 (359)
T ss_dssp GGCCEEEECSHHHHHHHHSGGGTT----------SEEEEEEEESCSSCEEEEEEEECSSCCCHHHHHHHHHHHHHTTTTT
T ss_pred cceeEccCCchHHHHhhhchhhcC----------ceEEEEEEcCCCCcEEEEEEEEECCCCCHHHHHHHHHHhccCccCC
Confidence 789999876642 23566543 6999999999999999999999999999999999999985432 1
Q ss_pred cEEecCCCCccccccccCCCcEEEEEEEe------Cc----CCeEEEEEEehhhhHhHHHHHHHHHHHHhC
Q 015441 332 FVKLLEKGVVPRTHNVRGSNYCLMNVFPD------RI----PGRAIIISVIDNLVKGASGQALQNLNIMLG 392 (406)
Q Consensus 332 fV~v~~~~~~P~~~~v~g~n~~~v~~~~~------~~----~~~~~~~~v~DNL~KGAAgqAVQ~~nl~~g 392 (406)
.+.+.+++ .-. .+-.|..+-.| .| -. .+-+-+++--|| -.|=+-+-|..+..|..
T Consensus 288 il~yte~~-~VS-~Df~~~~~ssi---~d~~~t~~~~~~~~~~~vk~~~WYDN-E~Gys~r~vdl~~~~~~ 352 (359)
T 3ids_C 288 ILGYTDEE-LVS-ADFINDNRSSI---YDSKATLQNNLPKERRFFKIVSWYDN-EWGYSHRVVDLVRHMAS 352 (359)
T ss_dssp TEEEECSC-CCG-GGGTTCCSSEE---EEHHHHHHSSCTTCSSEEEEEEEECT-THHHHHHHHHHHHHHHH
T ss_pred ceeEecCC-EEe-eecCCCCccee---EecccceeecccCCCCEEEEeEEECC-CcchHHHHHHHHHHHHh
Confidence 34554432 111 12223322111 12 11 233457778899 46777777777766643
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=5.4e-27 Score=233.08 Aligned_cols=226 Identities=12% Similarity=0.144 Sum_probs=166.9
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc--CCcccc----ccccCcccc-------CCCcccccCcccCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK--AGQSIG----SVFPHLISQ-------DLPTMVAVKDADFS 128 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~--~G~~i~----~v~p~l~~~-------~~~~~~~~~~~~~~ 128 (406)
||+||||+|+ |++|++++++|.+||++++++++++.. +++... .+|+.|.+. .+....+. ++.+.
T Consensus 1 M~irVgIiG~-G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~-~~l~~ 78 (334)
T 2czc_A 1 MKVKVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTL-NDLLE 78 (334)
T ss_dssp CCEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBH-HHHHT
T ss_pred CCcEEEEEeE-hHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcH-HHhcc
Confidence 4689999996 999999999999999999999997531 111111 344444321 11111111 11235
Q ss_pred CCCEEEEcCCCcchHHHHhh-CCCCCEEEEcCCcccCCCccchhhhcCC-CCCCccchhhhhccccccchhhccCCcEEe
Q 015441 129 NVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQ-PHIAPDLQKEAVYGLTEISREDIKNARLVA 206 (406)
Q Consensus 129 ~vDvVF~al~~~~s~~~~~~-l~~G~~VIDlSa~fRl~~~~~~~~~y~~-~~~~Pevn~~~vyglpE~~~~~i~~~~iVa 206 (406)
++|+||+|+|++...+.+++ +++|++|| +++++ +++ -. +..+|+ +|.++++++++|+
T Consensus 79 ~vDvV~~aTp~~~h~~~a~~~l~aGk~Vi-~sap~--~~d-------~~~~~~v~~-----------vn~~~~~~~~ii~ 137 (334)
T 2czc_A 79 KVDIIVDATPGGIGAKNKPLYEKAGVKAI-FQGGE--KAD-------VAEVSFVAQ-----------ANYEAALGKNYVR 137 (334)
T ss_dssp TCSEEEECCSTTHHHHHHHHHHHHTCEEE-ECTTS--CGG-------GSSEEECHH-----------HHGGGGTTCSEEE
T ss_pred CCCEEEECCCccccHHHHHHHHHcCCceE-eeccc--ccc-------cccceEEec-----------cCHHHHhhCCcEE
Confidence 89999999999998888875 47899999 56554 210 01 223333 4555666678999
Q ss_pred cCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhcCcccc-cCCcccchhhhhhhhccccCC
Q 015441 207 NPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSY-GVTRHRHVPEIEQGLTGFASS 285 (406)
Q Consensus 207 nPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni~py-~~~~h~h~pEi~~~l~~i~~~ 285 (406)
||+|+|+++++++++|++. +++..++++|++||.++.+ ++...|+.|| +...| |.+++.+.+ +
T Consensus 138 ~~~C~t~~l~P~~~~l~~~----I~~g~i~ti~a~s~~~~~~------r~~~~niiP~i~~~~g-~~~~i~~~l----~- 201 (334)
T 2czc_A 138 VVSCNTTGLVRTLSAIREY----ADYVYAVMIRRAADPNDTK------RGPINAIKPTVEVPSH-HGPDVQTVI----P- 201 (334)
T ss_dssp ECCHHHHHHHHHHHHHGGG----EEEEEEEEEEESSCTTCCS------CCCSSCCEECCSSSCT-HHHHHTTTS----C-
T ss_pred ecCcHHHHHHHHHHHHHHH----hccccEEEEEEecCccccc------cChhhcEEeccCCCCc-hhhhhheEE----E-
Confidence 9999999999999999764 6888999999999986543 2445799999 33444 678877764 2
Q ss_pred CceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHc
Q 015441 286 KVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISY 327 (406)
Q Consensus 286 ~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y 327 (406)
+.++.+|+|||+++||+.+++++++++++.+|++++|++++
T Consensus 202 -l~l~~~~~rVPv~~~~~~~~~~~~~~~~~~e~i~~~~~~~~ 242 (334)
T 2czc_A 202 -INIETMAFVVPTTLMHVHSVMVELKKPLTKDDVIDIFENTT 242 (334)
T ss_dssp -CCEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHTST
T ss_pred -EEEEEEEEEcCCCceEEEEEEEEECCCCCHHHHHHHHHhcc
Confidence 56999999999999999999999999999999999999983
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.7e-14 Score=140.46 Aligned_cols=216 Identities=18% Similarity=0.295 Sum_probs=133.7
Q ss_pred CccEEEEECcccHHHHHHHHHHHc-CCCceEEEEeccCc-C-CccccccccCccccCCCccccc-CcccCCCCCEEEEcC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLAN-HPYFGIKLMTADRK-A-GQSIGSVFPHLISQDLPTMVAV-KDADFSNVDAVFCCL 137 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~-hp~~elv~l~s~~~-~-G~~i~~v~p~l~~~~~~~~~~~-~~~~~~~vDvVF~al 137 (406)
+++||+|+| +|++|+.+++.|.+ +|.++++++++++. . ++.+...++.-.. . ..++.+ +..++.++|+||+|+
T Consensus 3 ~~irVaIIG-~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~-~-~~~e~ll~~~~~~~iDvV~~at 79 (312)
T 1nvm_B 3 QKLKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTT-Y-AGVEGLIKLPEFADIDFVFDAT 79 (312)
T ss_dssp SCEEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEE-S-SHHHHHHHSGGGGGEEEEEECS
T ss_pred CCCEEEEEc-CcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcc-c-CCHHHHHhccCCCCCcEEEECC
Confidence 458999999 89999999999976 99999999998652 2 3443322221000 0 011111 111235789999999
Q ss_pred CCcchHHHHhh-CCC--CCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccC---CcEEecCCCh
Q 015441 138 PHGTTQEIIKG-LPK--SLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKN---ARLVANPGCY 211 (406)
Q Consensus 138 ~~~~s~~~~~~-l~~--G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~---~~iVanPgC~ 211 (406)
|+....+++.. +++ |+.|||++.+++- + |+.||+|.+++.+ .+++++|||.
T Consensus 80 p~~~h~~~a~~al~a~~Gk~Vi~ekp~~~g------------~-----------~~~p~v~~~~~~~~~~~~lva~~g~~ 136 (312)
T 1nvm_B 80 SASAHVQNEALLRQAKPGIRLIDLTPAAIG------------P-----------YCVPVVNLEEHLGKLNVNMVTCGGQA 136 (312)
T ss_dssp CHHHHHHHHHHHHHHCTTCEEEECSTTCSS------------C-----------BCCHHHHTTTTTTCSEEECCCHHHHH
T ss_pred ChHHHHHHHHHHHHhCCCCEEEEcCccccc------------c-----------cccCccCHHHHHhccCCcEEEeCCcc
Confidence 99888888875 477 9999999988741 2 4455555555433 3678999997
Q ss_pred HHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhc-ccHHHHhcCcccccCCcccchhhhhhhhccccCCCceEE
Q 015441 212 PTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEA-NLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTVS 290 (406)
Q Consensus 212 tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~-~~~~e~~~ni~py~~~~h~h~pEi~~~l~~i~~~~~~v~ 290 (406)
+..++.++.++++.. ..+ +++++++.| +|...... ..+.++.. .+| +.++.....+.-+.
T Consensus 137 ~ipl~~a~~~~~~~~---~~~-iv~~i~sgs-~G~~~~~~l~e~~~~~~--~ai------------~~~gg~~~~k~il~ 197 (312)
T 1nvm_B 137 TIPMVAAVSRVAKVH---YAE-IVASISSKS-AGPGTRANIDEFTETTS--KAI------------EVIGGAAKGKAIII 197 (312)
T ss_dssp HHHHHHHHHTTSCEE---EEE-EEEEEEGGG-SCHHHHTCHHHHHHHHH--HHH------------HHTTCCSSEEEEEE
T ss_pred cchHHHHhhhhccch---hHh-Hhhhhhccc-cCCCcccchhhHHHHHH--HHH------------HHhhhccCCCcEEE
Confidence 665555665544321 122 578888777 45432211 01222211 111 11111111123477
Q ss_pred EEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHH
Q 015441 291 FTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKI 325 (406)
Q Consensus 291 ~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~ 325 (406)
|+|+..|++ +..++|+.++ .++.+++.+.-.+
T Consensus 198 ~~p~~~p~~--~~~tv~~~~~-~~~~~~~~~~~~~ 229 (312)
T 1nvm_B 198 MNPAEPPLI--MRDTVYVLSA-AADQAAVAASVAE 229 (312)
T ss_dssp EECCSSCCC--EEEEEEEEES-SCCHHHHHHHHHH
T ss_pred EecCCCCcc--cceeEEEEeC-CCCHHHHHHHHHH
Confidence 999999999 8889999997 7787776554443
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=98.36 E-value=8.8e-08 Score=97.02 Aligned_cols=192 Identities=11% Similarity=0.123 Sum_probs=102.4
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccCc-CCcccccccc-----Ccc--ccCCCcccccCcccCC--CCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRK-AGQSIGSVFP-----HLI--SQDLPTMVAVKDADFS--NVD 131 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~~-~G~~i~~v~p-----~l~--~~~~~~~~~~~~~~~~--~vD 131 (406)
|+||+|+|| |++|+.+++.|.+++++ ..+.+++++. ..+.+...++ .+. ..++.....+ .+.+. ++|
T Consensus 1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l-~~~l~~~~~D 78 (405)
T 4ina_A 1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEEL-VALINEVKPQ 78 (405)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHH-HHHHHHHCCS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHH-HHHHHhhCCC
Confidence 469999998 99999999999998875 3444554432 1111111110 010 0111111111 11123 389
Q ss_pred EEEEcCCCcchHHHHhh-CCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCcEEecCCC
Q 015441 132 AVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGC 210 (406)
Q Consensus 132 vVF~al~~~~s~~~~~~-l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~iVanPgC 210 (406)
+||.|+|......++.+ +++|+.+||++. ++-.+...| +.... .-+.|.-+ -.+..++.++||
T Consensus 79 vVin~ag~~~~~~v~~a~l~~g~~vvD~a~-~~~~~~~~~-----------~~~~~--~~l~~~a~--~aG~~~i~g~G~ 142 (405)
T 4ina_A 79 IVLNIALPYQDLTIMEACLRTGVPYLDTAN-YEHPDLAKF-----------EYKEQ--WAFHDRYK--EKGVMALLGSGF 142 (405)
T ss_dssp EEEECSCGGGHHHHHHHHHHHTCCEEESSC-CBCTTCSCB-----------CSHHH--HTTHHHHH--HHTCEEEECCBT
T ss_pred EEEECCCcccChHHHHHHHHhCCCEEEecC-CCCcccchh-----------hhHHH--HHHHHHHH--HhCCEEEEcCCC
Confidence 99999998776666665 478999999654 442211001 00000 01111111 124678999999
Q ss_pred hHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccH------HHHhcCcccccCCcccchhhh
Q 015441 211 YPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLY------SEIAEGIYSYGVTRHRHVPEI 275 (406)
Q Consensus 211 ~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~------~e~~~ni~py~~~~h~h~pEi 275 (406)
.+....+...++.++.+-.++.+.+.. ++|++....-.+.+ .+..++...|..+.++++|-.
T Consensus 143 ~PG~~~l~a~~~~~~~~~~i~~i~i~~---~~gg~~g~~~~~~~sp~~~~~~~~~~~~~~~~G~~~~~~~~ 210 (405)
T 4ina_A 143 DPGVTNVFCAYAQKHYFDEIHEIDILD---CNAGDHGYPFATNFNPEINLREVSSKGRYWENGEWIETEPM 210 (405)
T ss_dssp TTBHHHHHHHHHHHHTCSEEEEEEEEE---EECCBCSSSSCCSSCHHHHHHHTTSCEEEEETTEEEEESTT
T ss_pred CccHHHHHHHHHHHhccCcccEEEEEE---ecCCCCCccceeeeCHHHHHHHhcCCcEEEECCEEEEecCC
Confidence 998887877787765333466666533 33332211111112 355556666667777666533
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.8e-07 Score=88.75 Aligned_cols=92 Identities=16% Similarity=0.177 Sum_probs=64.9
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc---CCccccccccCccccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK---AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~---~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
|+||+|+||+|++|+++++++.++|+++++++.++.. .|+.+.++.. +. ..++...++ ++.+.++|+||.++++
T Consensus 7 mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g-~~-~gv~v~~dl-~~ll~~~DVVIDfT~p 83 (272)
T 4f3y_A 7 SMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLG-KQ-TGVALTDDI-ERVCAEADYLIDFTLP 83 (272)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTT-CC-CSCBCBCCH-HHHHHHCSEEEECSCH
T ss_pred ccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhC-CC-CCceecCCH-HHHhcCCCEEEEcCCH
Confidence 5899999999999999999999999999999887542 4554444321 11 122212111 1123478999999998
Q ss_pred cchHHHHhh-CCCCCEEEE
Q 015441 140 GTTQEIIKG-LPKSLKIVD 157 (406)
Q Consensus 140 ~~s~~~~~~-l~~G~~VID 157 (406)
..+.+.++. +++|+.||-
T Consensus 84 ~a~~~~~~~al~~G~~vVi 102 (272)
T 4f3y_A 84 EGTLVHLDAALRHDVKLVI 102 (272)
T ss_dssp HHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHcCCCEEE
Confidence 888887775 478887773
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.30 E-value=5.4e-07 Score=73.51 Aligned_cols=96 Identities=21% Similarity=0.238 Sum_probs=60.7
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCcc--ccCCCcccccCcccCCCCCEEEEcCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLI--SQDLPTMVAVKDADFSNVDAVFCCLP 138 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~--~~~~~~~~~~~~~~~~~vDvVF~al~ 138 (406)
++++|+|+|+ |++|+.+++.|..+...+++.+. ++.. -..+. ...+. ..++.....+ .+.+.++|+||.|+|
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~-r~~~~~~~~~--~~~~~~~~~d~~~~~~~-~~~~~~~d~vi~~~~ 78 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVAD-HDLAALAVLN--RMGVATKQVDAKDEAGL-AKALGGFDAVISAAP 78 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEE-SCHHHHHHHH--TTTCEEEECCTTCHHHH-HHHTTTCSEEEECSC
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEe-CCHHHHHHHH--hCCCcEEEecCCCHHHH-HHHHcCCCEEEECCC
Confidence 4579999999 99999999999887656765554 3211 01111 00000 0111111111 122468999999999
Q ss_pred CcchHHHHhhC-CCCCEEEEcCCcc
Q 015441 139 HGTTQEIIKGL-PKSLKIVDLSADF 162 (406)
Q Consensus 139 ~~~s~~~~~~l-~~G~~VIDlSa~f 162 (406)
......+.... +.|++++|++++.
T Consensus 79 ~~~~~~~~~~~~~~g~~~~~~~~~~ 103 (118)
T 3ic5_A 79 FFLTPIIAKAAKAAGAHYFDLTEDV 103 (118)
T ss_dssp GGGHHHHHHHHHHTTCEEECCCSCH
T ss_pred chhhHHHHHHHHHhCCCEEEecCcH
Confidence 88777777664 7899999998864
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=98.29 E-value=8.4e-07 Score=86.02 Aligned_cols=98 Identities=12% Similarity=0.133 Sum_probs=65.5
Q ss_pred cccCCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc---CCccccccccCccccCCCcccccCcccCCCCCEEE
Q 015441 58 QKSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK---AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVF 134 (406)
Q Consensus 58 ~~~~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~---~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF 134 (406)
+.+.+++||+|+||+|.+|+.+++.+.++|+++|+++.++.. .|+.+.+... +....++...++ ++.+.++|+|+
T Consensus 16 ~~m~~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G-~~~~gv~v~~dl-~~ll~~aDVvI 93 (288)
T 3ijp_A 16 TQGPGSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIG-SDFLGVRITDDP-ESAFSNTEGIL 93 (288)
T ss_dssp -----CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTT-CSCCSCBCBSCH-HHHTTSCSEEE
T ss_pred hhccCCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhc-cCcCCceeeCCH-HHHhcCCCEEE
Confidence 344567999999999999999999999999999999987643 4555444211 111122222222 22246899999
Q ss_pred EcCCCcchHHHHhh-CCCCCEEEE
Q 015441 135 CCLPHGTTQEIIKG-LPKSLKIVD 157 (406)
Q Consensus 135 ~al~~~~s~~~~~~-l~~G~~VID 157 (406)
.++.+....+.+.. +++|+.||-
T Consensus 94 DFT~p~a~~~~~~~~l~~Gv~vVi 117 (288)
T 3ijp_A 94 DFSQPQASVLYANYAAQKSLIHII 117 (288)
T ss_dssp ECSCHHHHHHHHHHHHHHTCEEEE
T ss_pred EcCCHHHHHHHHHHHHHcCCCEEE
Confidence 99988777777765 477887763
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=5.3e-06 Score=79.73 Aligned_cols=93 Identities=13% Similarity=0.124 Sum_probs=61.1
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc---CCccccccccCccccCCCcccccCcccCCCCCEEEEcCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK---AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLP 138 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~---~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~ 138 (406)
+++||+|+|++|.+|+.+++.+.++|.++++++.++.. .|+.+.+... +....++...++ ++.+.++|+|+.++.
T Consensus 4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g-~~~~~v~~~~dl-~~~l~~~DvVIDft~ 81 (273)
T 1dih_A 4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAG-AGKTGVTVQSSL-DAVKDDFDVFIDFTR 81 (273)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSS-SSCCSCCEESCS-TTTTTSCSEEEECSC
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcC-CCcCCceecCCH-HHHhcCCCEEEEcCC
Confidence 45899999999999999999999899999998876543 1333332211 011112212222 223457899997776
Q ss_pred CcchHHHHhh-CCCCCEEE
Q 015441 139 HGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 139 ~~~s~~~~~~-l~~G~~VI 156 (406)
+....+.+.. +++|+.||
T Consensus 82 p~~~~~~~~~a~~~G~~vV 100 (273)
T 1dih_A 82 PEGTLNHLAFCRQHGKGMV 100 (273)
T ss_dssp HHHHHHHHHHHHHTTCEEE
T ss_pred hHHHHHHHHHHHhCCCCEE
Confidence 6666677665 47898776
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.96 E-value=1.7e-05 Score=76.99 Aligned_cols=87 Identities=20% Similarity=0.302 Sum_probs=60.1
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
++||+|+| .|.+|+.+++.|.++|+++++++.++... +... + +.....+.++ .+..++|+||.|+|+..-
T Consensus 9 ~irv~IIG-~G~iG~~~~~~l~~~~~~elvav~d~~~~--~~~~-~----g~~~~~~~~l--~~~~~~DvViiatp~~~h 78 (304)
T 3bio_A 9 KIRAAIVG-YGNIGRYALQALREAPDFEIAGIVRRNPA--EVPF-E----LQPFRVVSDI--EQLESVDVALVCSPSREV 78 (304)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHHCTTEEEEEEECC----------C----CTTSCEESSG--GGSSSCCEEEECSCHHHH
T ss_pred CCEEEEEC-ChHHHHHHHHHHhcCCCCEEEEEEcCCHH--HHHH-c----CCCcCCHHHH--HhCCCCCEEEECCCchhh
Confidence 58999999 69999999999999999999998875432 1111 1 1111112221 112579999999998887
Q ss_pred HHHHhh-CCCCCEEEEcC
Q 015441 143 QEIIKG-LPKSLKIVDLS 159 (406)
Q Consensus 143 ~~~~~~-l~~G~~VIDlS 159 (406)
.+++.. +++|+.|||.+
T Consensus 79 ~~~~~~al~aG~~Vi~ek 96 (304)
T 3bio_A 79 ERTALEILKKGICTADSF 96 (304)
T ss_dssp HHHHHHHHTTTCEEEECC
T ss_pred HHHHHHHHHcCCeEEECC
Confidence 787765 58899999754
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.86 E-value=6.4e-06 Score=81.85 Aligned_cols=94 Identities=19% Similarity=0.185 Sum_probs=57.4
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccc--cCCCcccccCcccCCCCCEEEEcCC
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLIS--QDLPTMVAVKDADFSNVDAVFCCLP 138 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~--~~~~~~~~~~~~~~~~vDvVF~al~ 138 (406)
.+++||+|+|| |++|+.+++.|.++.++.+ +++.. .++..+.+.... .+......+ .+.+.++|+|+.|+|
T Consensus 14 g~~mkilvlGa-G~vG~~~~~~L~~~~~v~~---~~~~~--~~~~~~~~~~~~~~~d~~d~~~l-~~~~~~~DvVi~~~p 86 (365)
T 3abi_A 14 GRHMKVLILGA-GNIGRAIAWDLKDEFDVYI---GDVNN--ENLEKVKEFATPLKVDASNFDKL-VEVMKEFELVIGALP 86 (365)
T ss_dssp --CCEEEEECC-SHHHHHHHHHHTTTSEEEE---EESCH--HHHHHHTTTSEEEECCTTCHHHH-HHHHTTCSEEEECCC
T ss_pred CCccEEEEECC-CHHHHHHHHHHhcCCCeEE---EEcCH--HHHHHHhccCCcEEEecCCHHHH-HHHHhCCCEEEEecC
Confidence 44569999998 9999999999987654433 22211 111111111110 111111111 112468999999999
Q ss_pred CcchHHHHhhC-CCCCEEEEcCCc
Q 015441 139 HGTTQEIIKGL-PKSLKIVDLSAD 161 (406)
Q Consensus 139 ~~~s~~~~~~l-~~G~~VIDlSa~ 161 (406)
......+++++ ++|+.+||+|.+
T Consensus 87 ~~~~~~v~~~~~~~g~~yvD~s~~ 110 (365)
T 3abi_A 87 GFLGFKSIKAAIKSKVDMVDVSFM 110 (365)
T ss_dssp GGGHHHHHHHHHHHTCEEEECCCC
T ss_pred CcccchHHHHHHhcCcceEeeecc
Confidence 98777788764 889999999853
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=8.5e-05 Score=72.63 Aligned_cols=86 Identities=20% Similarity=0.315 Sum_probs=60.7
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
++||+|+| +|.+|+.+++.|.++|+++++++.+++... .+. + + +....+. ++.+.++|+||.|+++..-
T Consensus 3 ~irV~IiG-~G~mG~~~~~~l~~~~~~elvav~d~~~~~-~~~-----~-g--v~~~~d~-~~ll~~~DvViiatp~~~h 71 (320)
T 1f06_A 3 NIRVAIVG-YGNLGRSVEKLIAKQPDMDLVGIFSRRATL-DTK-----T-P--VFDVADV-DKHADDVDVLFLCMGSATD 71 (320)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHTTCSSEEEEEEEESSSCC-SSS-----S-C--EEEGGGG-GGTTTTCSEEEECSCTTTH
T ss_pred CCEEEEEe-ecHHHHHHHHHHhcCCCCEEEEEEcCCHHH-hhc-----C-C--CceeCCH-HHHhcCCCEEEEcCCcHHH
Confidence 58999999 699999999999999999999998765332 222 1 1 1111222 1122579999999998866
Q ss_pred HHHHh-hCCCCCEEEEcC
Q 015441 143 QEIIK-GLPKSLKIVDLS 159 (406)
Q Consensus 143 ~~~~~-~l~~G~~VIDlS 159 (406)
.+.+. .+++|+.||+-.
T Consensus 72 ~~~~~~al~aG~~Vv~ek 89 (320)
T 1f06_A 72 IPEQAPKFAQFACTVDTY 89 (320)
T ss_dssp HHHHHHHHTTTSEEECCC
T ss_pred HHHHHHHHHCCCEEEECC
Confidence 66554 468899988643
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.73 E-value=8.5e-05 Score=70.17 Aligned_cols=78 Identities=13% Similarity=0.098 Sum_probs=55.9
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
|+||+|+|+ |.+|+.+++++.+.++ +++++.++.... . + .++...+++ +.. ++|+++.++.+...
T Consensus 3 MmkI~ViGa-GrMG~~i~~~l~~~~~-eLva~~d~~~~~-~-------~---gv~v~~dl~-~l~-~~DVvIDft~p~a~ 67 (243)
T 3qy9_A 3 SMKILLIGY-GAMNQRVARLAEEKGH-EIVGVIENTPKA-T-------T---PYQQYQHIA-DVK-GADVAIDFSNPNLL 67 (243)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEECSSCC----------C---CSCBCSCTT-TCT-TCSEEEECSCHHHH
T ss_pred ceEEEEECc-CHHHHHHHHHHHhCCC-EEEEEEecCccc-c-------C---CCceeCCHH-HHh-CCCEEEEeCChHHH
Confidence 589999998 9999999999999999 999988765431 1 0 122222221 223 78999977777777
Q ss_pred HHHHhhCCCCCEEE
Q 015441 143 QEIIKGLPKSLKIV 156 (406)
Q Consensus 143 ~~~~~~l~~G~~VI 156 (406)
.+.++ +++|+.+|
T Consensus 68 ~~~~~-l~~g~~vV 80 (243)
T 3qy9_A 68 FPLLD-EDFHLPLV 80 (243)
T ss_dssp HHHHT-SCCCCCEE
T ss_pred HHHHH-HhcCCceE
Confidence 77777 77887666
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.64 E-value=7.6e-05 Score=67.79 Aligned_cols=74 Identities=24% Similarity=0.349 Sum_probs=43.8
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCcc--ccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLI--SQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~--~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
+|+||.|.||||++|+.|++.|.+.. .+++.+..+......+. +.+. ..|+.....+ ...+.++|+||.|++.
T Consensus 3 ~m~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~---~~~~~~~~Dl~d~~~~-~~~~~~~d~vi~~a~~ 77 (227)
T 3dhn_A 3 KVKKIVLIGASGFVGSALLNEALNRG-FEVTAVVRHPEKIKIEN---EHLKVKKADVSSLDEV-CEVCKGADAVISAFNP 77 (227)
T ss_dssp CCCEEEEETCCHHHHHHHHHHHHTTT-CEEEEECSCGGGCCCCC---TTEEEECCCTTCHHHH-HHHHTTCSEEEECCCC
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCC-CEEEEEEcCcccchhcc---CceEEEEecCCCHHHH-HHHhcCCCEEEEeCcC
Confidence 35799999999999999999998765 57777653222111110 1111 1122111111 1224689999999876
Q ss_pred c
Q 015441 140 G 140 (406)
Q Consensus 140 ~ 140 (406)
.
T Consensus 78 ~ 78 (227)
T 3dhn_A 78 G 78 (227)
T ss_dssp -
T ss_pred C
Confidence 5
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=97.62 E-value=7.8e-05 Score=68.72 Aligned_cols=99 Identities=13% Similarity=0.155 Sum_probs=54.7
Q ss_pred cCCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCcc--ccCCCcccccCcccCCCCCEEEEcC
Q 015441 60 SEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLI--SQDLPTMVAVKDADFSNVDAVFCCL 137 (406)
Q Consensus 60 ~~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~--~~~~~~~~~~~~~~~~~vDvVF~al 137 (406)
+.||++|.|.||||++|+.+++.|++....+++.+..+......+.. ..+. ..|+.....+ ...+.++|+||.|+
T Consensus 20 ~~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~--~~~~~~~~Dl~d~~~~-~~~~~~~D~vv~~a 96 (236)
T 3qvo_A 20 QGHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYP--TNSQIIMGDVLNHAAL-KQAMQGQDIVYANL 96 (236)
T ss_dssp --CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCC--TTEEEEECCTTCHHHH-HHHHTTCSEEEEEC
T ss_pred cCcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhccccc--CCcEEEEecCCCHHHH-HHHhcCCCEEEEcC
Confidence 34467899999999999999999998765677766532221111100 0000 1122111111 12246899999888
Q ss_pred CCcch----HHHHhhC-CCC-CEEEEcCCc
Q 015441 138 PHGTT----QEIIKGL-PKS-LKIVDLSAD 161 (406)
Q Consensus 138 ~~~~s----~~~~~~l-~~G-~~VIDlSa~ 161 (406)
+.... +.+++.+ +.| .++|-.|+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~iV~iSS~ 126 (236)
T 3qvo_A 97 TGEDLDIQANSVIAAMKACDVKRLIFVLSL 126 (236)
T ss_dssp CSTTHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCCchhHHHHHHHHHHHHcCCCEEEEEecc
Confidence 75322 3344444 344 367767764
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=97.53 E-value=7.1e-05 Score=73.65 Aligned_cols=89 Identities=11% Similarity=0.239 Sum_probs=60.6
Q ss_pred CccEEEEECcccHHHH-HHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccC--CCCCEEEEcCC
Q 015441 62 KQVRIGLLGASGYTGA-EIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCLP 138 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~-eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~al~ 138 (406)
||+||+|+| +|.+|+ ..++.|..+|.++++++.+++ ..+.+...+.. . ....+.++ ++.+ .++|+|+.|+|
T Consensus 1 M~~rvgiiG-~G~~g~~~~~~~l~~~~~~~l~av~d~~-~~~~~a~~~~~-~--~~~~~~~~-~~ll~~~~~D~V~i~tp 74 (349)
T 3i23_A 1 MTVKMGFIG-FGKSANRYHLPYVMIRETLEVKTIFDLH-VNEKAAAPFKE-K--GVNFTADL-NELLTDPEIELITICTP 74 (349)
T ss_dssp CCEEEEEEC-CSHHHHHTTHHHHTTCTTEEEEEEECTT-CCHHHHHHHHT-T--TCEEESCT-HHHHSCTTCCEEEECSC
T ss_pred CeeEEEEEc-cCHHHHHHHHHHHhhCCCeEEEEEECCC-HHHHHHHhhCC-C--CCeEECCH-HHHhcCCCCCEEEEeCC
Confidence 679999999 799998 688888889999999999866 33333221100 0 11111111 1112 36899999999
Q ss_pred CcchHHHHhh-CCCCCEEE
Q 015441 139 HGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 139 ~~~s~~~~~~-l~~G~~VI 156 (406)
+..-.+++.+ +++|+.|+
T Consensus 75 ~~~h~~~~~~al~aGk~Vl 93 (349)
T 3i23_A 75 AHTHYDLAKQAILAGKSVI 93 (349)
T ss_dssp GGGHHHHHHHHHHTTCEEE
T ss_pred cHHHHHHHHHHHHcCCEEE
Confidence 9877777764 58898776
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.50 E-value=7.5e-05 Score=73.11 Aligned_cols=87 Identities=18% Similarity=0.335 Sum_probs=59.5
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-ccccccccCccccCCCcccccCcccC--CCCCEEEEcCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCLP 138 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~al~ 138 (406)
+|+||+|+| .|.+|+.+++.|..+|.++++++.++...- +.+...++ ...+.++ .+.+ .++|+|+.|+|
T Consensus 3 ~~~rvgiiG-~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g------~~~~~~~-~~~l~~~~~D~V~i~tp 74 (344)
T 3euw_A 3 LTLRIALFG-AGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANG------AEAVASP-DEVFARDDIDGIVIGSP 74 (344)
T ss_dssp CCEEEEEEC-CSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTT------CEEESSH-HHHTTCSCCCEEEECSC
T ss_pred CceEEEEEC-CcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcC------CceeCCH-HHHhcCCCCCEEEEeCC
Confidence 468999999 699999999999999999999998754321 11111111 1111111 1112 37899999999
Q ss_pred CcchHHHHhh-CCCCCEEE
Q 015441 139 HGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 139 ~~~s~~~~~~-l~~G~~VI 156 (406)
+..-.+++.. +++|+.|+
T Consensus 75 ~~~h~~~~~~al~~gk~v~ 93 (344)
T 3euw_A 75 TSTHVDLITRAVERGIPAL 93 (344)
T ss_dssp GGGHHHHHHHHHHTTCCEE
T ss_pred chhhHHHHHHHHHcCCcEE
Confidence 9888887765 57887665
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.47 E-value=5.6e-05 Score=73.65 Aligned_cols=86 Identities=23% Similarity=0.372 Sum_probs=59.1
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-ccccccccCccccCCCcccccCcccC--CCCCEEEEcCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCLP 138 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~al~ 138 (406)
||+||+|+| +|.+|+.+++.|.++|.++++++.++...- +.+...+ .++ +.+. ++.+ .++|+|+.|+|
T Consensus 2 m~~~vgiiG-~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~------~~~-~~~~-~~~l~~~~~D~V~i~tp 72 (331)
T 4hkt_A 2 MTVRFGLLG-AGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAY------GCE-VRTI-DAIEAAADIDAVVICTP 72 (331)
T ss_dssp -CEEEEEEC-CSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHT------TCE-ECCH-HHHHHCTTCCEEEECSC
T ss_pred CceEEEEEC-CCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHh------CCC-cCCH-HHHhcCCCCCEEEEeCC
Confidence 678999999 699999999999999999999998764321 1111111 111 1111 1112 37899999999
Q ss_pred CcchHHHHhh-CCCCCEEE
Q 015441 139 HGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 139 ~~~s~~~~~~-l~~G~~VI 156 (406)
+..-.+++.. +++|+.|+
T Consensus 73 ~~~h~~~~~~al~~gk~v~ 91 (331)
T 4hkt_A 73 TDTHADLIERFARAGKAIF 91 (331)
T ss_dssp GGGHHHHHHHHHHTTCEEE
T ss_pred chhHHHHHHHHHHcCCcEE
Confidence 9888887765 57888766
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00011 Score=72.14 Aligned_cols=88 Identities=11% Similarity=0.218 Sum_probs=58.2
Q ss_pred CccEEEEECcccHHHHH-HHH-HHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccC--CCCCEEEEcC
Q 015441 62 KQVRIGLLGASGYTGAE-IVR-LLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCL 137 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~e-Llr-lL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~al 137 (406)
||+||+|+| +|.+|+. .++ +|..+|.++++++.++..........++ + ...+.++ ++.+ .++|+|+.|+
T Consensus 1 m~~rvgiiG-~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~---~--~~~~~~~-~~ll~~~~~D~V~i~t 73 (345)
T 3f4l_A 1 MVINCAFIG-FGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYS---H--IHFTSDL-DEVLNDPDVKLVVVCT 73 (345)
T ss_dssp -CEEEEEEC-CSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGT---T--CEEESCT-HHHHTCTTEEEEEECS
T ss_pred CceEEEEEe-cCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcC---C--CceECCH-HHHhcCCCCCEEEEcC
Confidence 578999999 8999986 677 6678899999999986532111111111 1 1111111 1112 3589999999
Q ss_pred CCcchHHHHhh-CCCCCEEE
Q 015441 138 PHGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 138 ~~~~s~~~~~~-l~~G~~VI 156 (406)
|+..-.+++.+ +++|+.|+
T Consensus 74 p~~~h~~~~~~al~aGk~Vl 93 (345)
T 3f4l_A 74 HADSHFEYAKRALEAGKNVL 93 (345)
T ss_dssp CGGGHHHHHHHHHHTTCEEE
T ss_pred ChHHHHHHHHHHHHcCCcEE
Confidence 99887787765 58898877
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00013 Score=72.19 Aligned_cols=87 Identities=18% Similarity=0.394 Sum_probs=58.9
Q ss_pred CCccEEEEECcccHHHHH-HHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccC--CCCCEEEEcC
Q 015441 61 EKQVRIGLLGASGYTGAE-IVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCL 137 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~e-LlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~al 137 (406)
.+++||||+| .|.+|+. .++.|..+|.++++++.++... +....++.. ..+.++ ++.+ .++|+|+.|+
T Consensus 5 ~~~~rvgiiG-~G~~g~~~~~~~l~~~~~~~l~av~d~~~~--~~~~~~~~~-----~~~~~~-~~ll~~~~~D~V~i~t 75 (364)
T 3e82_A 5 NNTINIALIG-YGFVGKTFHAPLIRSVPGLNLAFVASRDEE--KVKRDLPDV-----TVIASP-EAAVQHPDVDLVVIAS 75 (364)
T ss_dssp --CEEEEEEC-CSHHHHHTHHHHHHTSTTEEEEEEECSCHH--HHHHHCTTS-----EEESCH-HHHHTCTTCSEEEECS
T ss_pred CCcceEEEEC-CCHHHHHHHHHHHhhCCCeEEEEEEcCCHH--HHHhhCCCC-----cEECCH-HHHhcCCCCCEEEEeC
Confidence 4568999999 6999997 7888999999999999876431 111111111 111111 1112 3789999999
Q ss_pred CCcchHHHHhh-CCCCCEEE
Q 015441 138 PHGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 138 ~~~~s~~~~~~-l~~G~~VI 156 (406)
|+..-.+++.+ +++|+.|+
T Consensus 76 p~~~H~~~~~~al~aGk~Vl 95 (364)
T 3e82_A 76 PNATHAPLARLALNAGKHVV 95 (364)
T ss_dssp CGGGHHHHHHHHHHTTCEEE
T ss_pred ChHHHHHHHHHHHHCCCcEE
Confidence 99888887764 58898877
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00019 Score=66.73 Aligned_cols=82 Identities=17% Similarity=0.267 Sum_probs=58.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccC-CCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADF-SNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~-~~vDvVF~al~~~~s 142 (406)
+||+|+| .|.+|+.+++.|. .+.++++.+.++... .... ..++ .+.+ .++|+||.|+|+...
T Consensus 1 m~vgiIG-~G~mG~~~~~~l~-~~g~~lv~v~d~~~~---~~~~-----------~~~~-~~l~~~~~DvVv~~~~~~~~ 63 (236)
T 2dc1_A 1 MLVGLIG-YGAIGKFLAEWLE-RNGFEIAAILDVRGE---HEKM-----------VRGI-DEFLQREMDVAVEAASQQAV 63 (236)
T ss_dssp CEEEEEC-CSHHHHHHHHHHH-HTTCEEEEEECSSCC---CTTE-----------ESSH-HHHTTSCCSEEEECSCHHHH
T ss_pred CEEEEEC-CCHHHHHHHHHHh-cCCCEEEEEEecCcc---hhhh-----------cCCH-HHHhcCCCCEEEECCCHHHH
Confidence 4899999 5999999999888 578899888775421 1110 1111 1112 478999999998877
Q ss_pred HHHHhh-CCCCCEEEEcCCcc
Q 015441 143 QEIIKG-LPKSLKIVDLSADF 162 (406)
Q Consensus 143 ~~~~~~-l~~G~~VIDlSa~f 162 (406)
.+++.. +++|+.||+.+.-.
T Consensus 64 ~~~~~~~l~~G~~vv~~~~~~ 84 (236)
T 2dc1_A 64 KDYAEKILKAGIDLIVLSTGA 84 (236)
T ss_dssp HHHHHHHHHTTCEEEESCGGG
T ss_pred HHHHHHHHHCCCcEEEECccc
Confidence 777754 58899999887644
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.40 E-value=6.6e-05 Score=73.59 Aligned_cols=88 Identities=18% Similarity=0.228 Sum_probs=58.9
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-ccccccccCccccCCCcccccCcccC--CCCCEEEEcCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCLP 138 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~al~ 138 (406)
||+||+||| +|.+|+.+++.|..+|.++++++.++...- +.+...++ . . ..+.+. .+.+ .++|+|+.|+|
T Consensus 1 M~~rvgiIG-~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~---~-~-~~~~~~-~~ll~~~~~D~V~i~tp 73 (344)
T 3ezy_A 1 MSLRIGVIG-LGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLG---V-E-KAYKDP-HELIEDPNVDAVLVCSS 73 (344)
T ss_dssp -CEEEEEEC-CSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHT---C-S-EEESSH-HHHHHCTTCCEEEECSC
T ss_pred CeeEEEEEc-CCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhC---C-C-ceeCCH-HHHhcCCCCCEEEEcCC
Confidence 578999999 799999999999999999999998754311 11111110 0 0 011111 1112 37899999999
Q ss_pred CcchHHHHhh-CCCCCEEE
Q 015441 139 HGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 139 ~~~s~~~~~~-l~~G~~VI 156 (406)
+..-.+++.. +++|+.|+
T Consensus 74 ~~~h~~~~~~al~~gk~v~ 92 (344)
T 3ezy_A 74 TNTHSELVIACAKAKKHVF 92 (344)
T ss_dssp GGGHHHHHHHHHHTTCEEE
T ss_pred CcchHHHHHHHHhcCCeEE
Confidence 9887777764 57888665
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00016 Score=68.14 Aligned_cols=94 Identities=13% Similarity=0.089 Sum_probs=54.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCc--cccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHL--ISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l--~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
|||.|.||||++|+.+++.|.+.+..+++.+..+......+.. +.+ ...|+.....+ ...+.++|+||.|.+...
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~--~~v~~~~~D~~d~~~l-~~~~~~~d~vi~~a~~~~ 77 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWR--GKVSVRQLDYFNQESM-VEAFKGMDTVVFIPSIIH 77 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGB--TTBEEEECCTTCHHHH-HHHTTTCSEEEECCCCCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhh--CCCEEEEcCCCCHHHH-HHHHhCCCEEEEeCCCCc
Confidence 3799999999999999999987767788887643221111110 001 01122211111 123578999999987532
Q ss_pred --------hHHHHhhC-CCCC-EEEEcCC
Q 015441 142 --------TQEIIKGL-PKSL-KIVDLSA 160 (406)
Q Consensus 142 --------s~~~~~~l-~~G~-~VIDlSa 160 (406)
.+.+++++ ++|+ ++|-+|+
T Consensus 78 ~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss 106 (289)
T 3e48_A 78 PSFKRIPEVENLVYAAKQSGVAHIIFIGY 106 (289)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred cchhhHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 12334443 3564 5775665
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00021 Score=67.49 Aligned_cols=72 Identities=19% Similarity=0.266 Sum_probs=54.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
+||+|+||+|.+|+.+++.+.+.|.++++++.++.. ++. .+ ...++|+|+.++.+....
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~---------------dl~---~~---~~~~~DvvIDfT~p~a~~ 59 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGD---------------PLS---LL---TDGNTEVVIDFTHPDVVM 59 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTC---------------CTH---HH---HHTTCCEEEECSCTTTHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCC---------------CHH---HH---hccCCcEEEEccChHHHH
Confidence 489999999999999999998889999999886420 111 11 003689999888888888
Q ss_pred HHHhh-CCCCCEEE
Q 015441 144 EIIKG-LPKSLKIV 156 (406)
Q Consensus 144 ~~~~~-l~~G~~VI 156 (406)
+.+.. +++|+.+|
T Consensus 60 ~~~~~a~~~g~~~V 73 (245)
T 1p9l_A 60 GNLEFLIDNGIHAV 73 (245)
T ss_dssp HHHHHHHHTTCEEE
T ss_pred HHHHHHHHcCCCEE
Confidence 87766 47888665
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00017 Score=70.29 Aligned_cols=87 Identities=10% Similarity=0.217 Sum_probs=58.4
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCC-cccccCcccC--CCCCEEEEcC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLP-TMVAVKDADF--SNVDAVFCCL 137 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~-~~~~~~~~~~--~~vDvVF~al 137 (406)
+++||+|+| +|.+|+.+++.|..+|.++++++.+++.. .+.+...++ .+ .+.+. ++.+ .++|+|+.|+
T Consensus 4 ~~~rigiiG-~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~------~~~~~~~~-~~ll~~~~~D~V~i~t 75 (329)
T 3evn_A 4 SKVRYGVVS-TAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYH------LPKAYDKL-EDMLADESIDVIYVAT 75 (329)
T ss_dssp -CEEEEEEB-CCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCC------CSCEESCH-HHHHTCTTCCEEEECS
T ss_pred CceEEEEEe-chHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcC------CCcccCCH-HHHhcCCCCCEEEECC
Confidence 458999999 69999999999988899999999875432 222222111 11 11111 1112 3789999999
Q ss_pred CCcchHHHHhh-CCCCCEEE
Q 015441 138 PHGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 138 ~~~~s~~~~~~-l~~G~~VI 156 (406)
|+..-.+++.. +++|+.|+
T Consensus 76 p~~~h~~~~~~al~aGk~Vl 95 (329)
T 3evn_A 76 INQDHYKVAKAALLAGKHVL 95 (329)
T ss_dssp CGGGHHHHHHHHHHTTCEEE
T ss_pred CcHHHHHHHHHHHHCCCeEE
Confidence 99887787764 58888766
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00024 Score=69.87 Aligned_cols=87 Identities=18% Similarity=0.413 Sum_probs=59.4
Q ss_pred CCccEEEEECcccHHHHH-HHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccC--CCCCEEEEcC
Q 015441 61 EKQVRIGLLGASGYTGAE-IVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCL 137 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~e-LlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~al 137 (406)
.+++||||+| +|.+|+. .++.|..+|.++++++.++... +....++ + ...+.++ ++.+ .++|+|+.|+
T Consensus 5 ~~~~rvgiiG-~G~~g~~~~~~~~~~~~~~~l~av~d~~~~--~~~~~~~---~--~~~~~~~-~~ll~~~~vD~V~i~t 75 (352)
T 3kux_A 5 ADKIKVGLLG-YGYASKTFHAPLIMGTPGLELAGVSSSDAS--KVHADWP---A--IPVVSDP-QMLFNDPSIDLIVIPT 75 (352)
T ss_dssp TCCEEEEEEC-CSHHHHHTHHHHHHTSTTEEEEEEECSCHH--HHHTTCS---S--CCEESCH-HHHHHCSSCCEEEECS
T ss_pred cCCceEEEEC-CCHHHHHHHHHHHhhCCCcEEEEEECCCHH--HHHhhCC---C--CceECCH-HHHhcCCCCCEEEEeC
Confidence 3568999999 8999997 8899999999999999975432 1111111 1 1111111 1111 3699999999
Q ss_pred CCcchHHHHhh-CCCCCEEE
Q 015441 138 PHGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 138 ~~~~s~~~~~~-l~~G~~VI 156 (406)
|+..-.+++.+ +++|+.|+
T Consensus 76 p~~~H~~~~~~al~aGkhV~ 95 (352)
T 3kux_A 76 PNDTHFPLAQSALAAGKHVV 95 (352)
T ss_dssp CTTTHHHHHHHHHHTTCEEE
T ss_pred ChHHHHHHHHHHHHCCCcEE
Confidence 99888787764 68898776
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00011 Score=70.84 Aligned_cols=86 Identities=19% Similarity=0.288 Sum_probs=59.0
Q ss_pred ccEEEEECcccHHHHH-HHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 63 QVRIGLLGASGYTGAE-IVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 63 ~ikVaIvGATG~vG~e-LlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
++||+||| .|.+|+. +++.|.++|.++++++.++... .+.+...+ + .+.+.+. ++.+.++|+|+.|+|+.
T Consensus 6 ~~~igiIG-~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~----~--~~~~~~~-~~ll~~~D~V~i~tp~~ 77 (308)
T 3uuw_A 6 NIKMGMIG-LGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDY----R--IMPFDSI-ESLAKKCDCIFLHSSTE 77 (308)
T ss_dssp CCEEEEEC-CSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHH----T--CCBCSCH-HHHHTTCSEEEECCCGG
T ss_pred cCcEEEEe-cCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHc----C--CCCcCCH-HHHHhcCCEEEEeCCcH
Confidence 47999999 7999996 9999999999999999876432 11111111 1 1111111 11234899999999999
Q ss_pred chHHHHhh-CCCCCEEE
Q 015441 141 TTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 141 ~s~~~~~~-l~~G~~VI 156 (406)
.-.+++.. +++|+.|+
T Consensus 78 ~h~~~~~~al~~gk~vl 94 (308)
T 3uuw_A 78 THYEIIKILLNLGVHVY 94 (308)
T ss_dssp GHHHHHHHHHHTTCEEE
T ss_pred hHHHHHHHHHHCCCcEE
Confidence 88887765 58888776
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00023 Score=70.27 Aligned_cols=86 Identities=16% Similarity=0.265 Sum_probs=59.2
Q ss_pred CccEEEEECcccHHHHH-HHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccC--CCCCEEEEcCC
Q 015441 62 KQVRIGLLGASGYTGAE-IVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCLP 138 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~e-LlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~al~ 138 (406)
+++|||||| +|.+|+. .++.|..+|.++++++.++... ++...++. ...+.++ ++.+ .++|+|+.|+|
T Consensus 4 ~~~rvgiiG-~G~~g~~~~~~~l~~~~~~~l~av~d~~~~--~~~~~~~~-----~~~~~~~-~~ll~~~~vD~V~i~tp 74 (362)
T 3fhl_A 4 EIIKTGLAA-FGMSGQVFHAPFISTNPHFELYKIVERSKE--LSKERYPQ-----ASIVRSF-KELTEDPEIDLIVVNTP 74 (362)
T ss_dssp CCEEEEESC-CSHHHHHTTHHHHHHCTTEEEEEEECSSCC--GGGTTCTT-----SEEESCS-HHHHTCTTCCEEEECSC
T ss_pred CceEEEEEC-CCHHHHHHHHHHHhhCCCeEEEEEEcCCHH--HHHHhCCC-----CceECCH-HHHhcCCCCCEEEEeCC
Confidence 468999999 7999997 7888888999999999976532 12222211 1111111 1112 35999999999
Q ss_pred CcchHHHHhh-CCCCCEEE
Q 015441 139 HGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 139 ~~~s~~~~~~-l~~G~~VI 156 (406)
+..-.+++.+ +++|+.|+
T Consensus 75 ~~~H~~~~~~al~aGkhVl 93 (362)
T 3fhl_A 75 DNTHYEYAGMALEAGKNVV 93 (362)
T ss_dssp GGGHHHHHHHHHHTTCEEE
T ss_pred hHHHHHHHHHHHHCCCeEE
Confidence 9877777764 58898776
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00016 Score=71.05 Aligned_cols=88 Identities=13% Similarity=0.195 Sum_probs=59.8
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccC--CCCCEEEEcC
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCL 137 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~al 137 (406)
.|++||+|+| .|.+|+..++.|..+|.++++++.++... .+.+...+ + ++.+.+. ++.+ .++|+|+.|+
T Consensus 3 ~~~~~vgiiG-~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~----g--~~~~~~~-~~~l~~~~~D~V~i~t 74 (354)
T 3db2_A 3 YNPVGVAAIG-LGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRY----N--CAGDATM-EALLAREDVEMVIITV 74 (354)
T ss_dssp CCCEEEEEEC-CSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHH----T--CCCCSSH-HHHHHCSSCCEEEECS
T ss_pred CCcceEEEEc-cCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHc----C--CCCcCCH-HHHhcCCCCCEEEEeC
Confidence 3568999999 79999999999999999999999875431 11111111 1 1111111 1112 4689999999
Q ss_pred CCcchHHHHhh-CCCCCEEE
Q 015441 138 PHGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 138 ~~~~s~~~~~~-l~~G~~VI 156 (406)
|+..-.+++.+ +++|+.|+
T Consensus 75 p~~~h~~~~~~al~~gk~vl 94 (354)
T 3db2_A 75 PNDKHAEVIEQCARSGKHIY 94 (354)
T ss_dssp CTTSHHHHHHHHHHTTCEEE
T ss_pred ChHHHHHHHHHHHHcCCEEE
Confidence 99888787764 58888665
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00016 Score=65.67 Aligned_cols=99 Identities=16% Similarity=0.164 Sum_probs=53.3
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccCcc--ccCCCcccccCcccCCCCCEEEEcCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLI--SQDLPTMVAVKDADFSNVDAVFCCLP 138 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~l~--~~~~~~~~~~~~~~~~~vDvVF~al~ 138 (406)
||.+|.|.||||.+|+.+++.|++....+++.+..+.. .-+.+....+... ..|+.....+ ...+.++|+||.+++
T Consensus 4 mmk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~-~~~~~~~d~vv~~ag 82 (221)
T 3r6d_A 4 MYXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXL-EQAVTNAEVVFVGAM 82 (221)
T ss_dssp SCSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHH-HHHHTTCSEEEESCC
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHH-HHHHcCCCEEEEcCC
Confidence 33459999999999999999998334567777653222 1111100011110 1122111111 112468999999997
Q ss_pred Ccc--hHHHHhhC-CCC-CEEEEcCCc
Q 015441 139 HGT--TQEIIKGL-PKS-LKIVDLSAD 161 (406)
Q Consensus 139 ~~~--s~~~~~~l-~~G-~~VIDlSa~ 161 (406)
... ++.+++.+ +.| .++|-.|+.
T Consensus 83 ~~n~~~~~~~~~~~~~~~~~iv~iSs~ 109 (221)
T 3r6d_A 83 ESGSDMASIVKALSRXNIRRVIGVSMA 109 (221)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEEEET
T ss_pred CCChhHHHHHHHHHhcCCCeEEEEeec
Confidence 521 34445544 344 367766664
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00018 Score=70.50 Aligned_cols=89 Identities=18% Similarity=0.210 Sum_probs=59.9
Q ss_pred CccEEEEECcccHHHHHHHHHHH-cCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccC--CCCCEEEEcC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLA-NHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCL 137 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~-~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~al 137 (406)
||+||+||| .|.+|+..++.|. .+|.++++++.++... .+.+...++. ....+.+. ++.+ .++|+|+.|+
T Consensus 1 M~~rigiIG-~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~----~~~~~~~~-~~ll~~~~~D~V~i~t 74 (344)
T 3mz0_A 1 MSLRIGVIG-TGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQL----NATVYPND-DSLLADENVDAVLVTS 74 (344)
T ss_dssp CCEEEEEEC-CSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTC----CCEEESSH-HHHHHCTTCCEEEECS
T ss_pred CeEEEEEEC-ccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCC----CCeeeCCH-HHHhcCCCCCEEEECC
Confidence 578999999 6999999999998 7899999999876431 1112211110 01111111 1111 3689999999
Q ss_pred CCcchHHHHhh-CCCCCEEE
Q 015441 138 PHGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 138 ~~~~s~~~~~~-l~~G~~VI 156 (406)
|+..-.+++.+ +++|+.|+
T Consensus 75 p~~~h~~~~~~al~~Gk~vl 94 (344)
T 3mz0_A 75 WGPAHESSVLKAIKAQKYVF 94 (344)
T ss_dssp CGGGHHHHHHHHHHTTCEEE
T ss_pred CchhHHHHHHHHHHCCCcEE
Confidence 99888887765 58888776
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0006 Score=61.69 Aligned_cols=95 Identities=15% Similarity=0.234 Sum_probs=54.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCc-ccccCcccCCCCCEEEEcCCCcc-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPT-MVAVKDADFSNVDAVFCCLPHGT- 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~-~~~~~~~~~~~vDvVF~al~~~~- 141 (406)
|||.|.||||++|+.+++.|.+.. .+++.+..+...-.....+. +...|+.. .+.+ ...+.++|+||.|++...
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~~~~~--~~~~D~~d~~~~~-~~~~~~~d~vi~~ag~~~~ 76 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTD-YQIYAGARKVEQVPQYNNVK--AVHFDVDWTPEEM-AKQLHGMDAIINVSGSGGK 76 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSS-CEEEEEESSGGGSCCCTTEE--EEECCTTSCHHHH-HTTTTTCSEEEECCCCTTS
T ss_pred CeEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCccchhhcCCce--EEEecccCCHHHH-HHHHcCCCEEEECCcCCCC
Confidence 389999999999999999998764 67777753222111111000 00112222 1111 223568999999998543
Q ss_pred ---------hHHHHhhC-CCC-CEEEEcCCcc
Q 015441 142 ---------TQEIIKGL-PKS-LKIVDLSADF 162 (406)
Q Consensus 142 ---------s~~~~~~l-~~G-~~VIDlSa~f 162 (406)
+..+++++ +.| .++|-+|+.+
T Consensus 77 ~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~ 108 (219)
T 3dqp_A 77 SLLKVDLYGAVKLMQAAEKAEVKRFILLSTIF 108 (219)
T ss_dssp SCCCCCCHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CcEeEeHHHHHHHHHHHHHhCCCEEEEECccc
Confidence 23344443 345 3677677754
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00024 Score=70.18 Aligned_cols=86 Identities=19% Similarity=0.331 Sum_probs=59.5
Q ss_pred CccEEEEECcccHHHHH-HHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccC--CCCCEEEEcCC
Q 015441 62 KQVRIGLLGASGYTGAE-IVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCLP 138 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~e-LlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~al~ 138 (406)
+++||||+| .|.+|+. .++.|..+|.++++++.++... +....++.. ..+.++ ++.+ .++|+|+.|+|
T Consensus 4 ~~~rvgiiG-~G~~g~~~~~~~l~~~~~~~l~av~d~~~~--~~~~~~~~~-----~~~~~~-~~ll~~~~vD~V~i~tp 74 (358)
T 3gdo_A 4 DTIKVGILG-YGLSGSVFHGPLLDVLDEYQISKIMTSRTE--EVKRDFPDA-----EVVHEL-EEITNDPAIELVIVTTP 74 (358)
T ss_dssp TCEEEEEEC-CSHHHHHTTHHHHTTCTTEEEEEEECSCHH--HHHHHCTTS-----EEESST-HHHHTCTTCCEEEECSC
T ss_pred CcceEEEEc-cCHHHHHHHHHHHhhCCCeEEEEEEcCCHH--HHHhhCCCC-----ceECCH-HHHhcCCCCCEEEEcCC
Confidence 458999999 7999997 7888888999999999976531 122212111 111111 1112 37899999999
Q ss_pred CcchHHHHhh-CCCCCEEE
Q 015441 139 HGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 139 ~~~s~~~~~~-l~~G~~VI 156 (406)
+..-.+++.+ +++|+.|+
T Consensus 75 ~~~H~~~~~~al~aGkhVl 93 (358)
T 3gdo_A 75 SGLHYEHTMACIQAGKHVV 93 (358)
T ss_dssp TTTHHHHHHHHHHTTCEEE
T ss_pred cHHHHHHHHHHHHcCCeEE
Confidence 9888887765 58898776
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00015 Score=70.95 Aligned_cols=91 Identities=14% Similarity=0.266 Sum_probs=59.0
Q ss_pred cccCCccEEEEECcccHHHHH-HHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCC-cccccCcccC--CCCCE
Q 015441 58 QKSEKQVRIGLLGASGYTGAE-IVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLP-TMVAVKDADF--SNVDA 132 (406)
Q Consensus 58 ~~~~~~ikVaIvGATG~vG~e-LlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~-~~~~~~~~~~--~~vDv 132 (406)
....+|+|||||| +|.+|+. +++.|..+|.+++++++++... .+.+..-++ ++ .+.++ ++.+ .++|+
T Consensus 18 ~~~~~mirigiIG-~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g------~~~~y~d~-~ell~~~~iDa 89 (350)
T 4had_A 18 LYFQSMLRFGIIS-TAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFS------VPHAFGSY-EEMLASDVIDA 89 (350)
T ss_dssp ----CCEEEEEES-CCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHT------CSEEESSH-HHHHHCSSCSE
T ss_pred ccccCccEEEEEc-ChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcC------CCeeeCCH-HHHhcCCCCCE
Confidence 3345679999999 8999985 6888999999999999986431 112211111 00 01111 1111 46899
Q ss_pred EEEcCCCcchHHHHhh-CCCCCEEE
Q 015441 133 VFCCLPHGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 133 VF~al~~~~s~~~~~~-l~~G~~VI 156 (406)
|+.|+|+..=.+++.+ +++|+.|+
T Consensus 90 V~I~tP~~~H~~~~~~al~aGkhVl 114 (350)
T 4had_A 90 VYIPLPTSQHIEWSIKAADAGKHVV 114 (350)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEE
T ss_pred EEEeCCCchhHHHHHHHHhcCCEEE
Confidence 9999999877777754 68898876
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00034 Score=67.97 Aligned_cols=92 Identities=15% Similarity=0.097 Sum_probs=60.0
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCc--c----cCCCCCEEEE
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKD--A----DFSNVDAVFC 135 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~--~----~~~~vDvVF~ 135 (406)
+|+||||||+.|++|+..++.|... ..+++++.++...-......++... -...++++-. + .-.++|+|+.
T Consensus 2 ~mirvgiIG~gG~i~~~h~~~l~~~-~~~lvav~d~~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~l~~~~~~vD~V~I 78 (312)
T 3o9z_A 2 HMTRFALTGLAGYIAPRHLKAIKEV-GGVLVASLDPATNVGLVDSFFPEAE--FFTEPEAFEAYLEDLRDRGEGVDYLSI 78 (312)
T ss_dssp -CCEEEEECTTSSSHHHHHHHHHHT-TCEEEEEECSSCCCGGGGGTCTTCE--EESCHHHHHHHHHHHHHTTCCCSEEEE
T ss_pred CceEEEEECCChHHHHHHHHHHHhC-CCEEEEEEcCCHHHHHHHhhCCCCc--eeCCHHHHHHHhhhhcccCCCCcEEEE
Confidence 4689999997799999999999876 5799999986543222222222111 0011111100 0 1147899999
Q ss_pred cCCCcchHHHHhh-CCCCCEEE
Q 015441 136 CLPHGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 136 al~~~~s~~~~~~-l~~G~~VI 156 (406)
|+|+..=.+++.+ +++|+.|+
T Consensus 79 ~tP~~~H~~~~~~al~aGkhVl 100 (312)
T 3o9z_A 79 ASPNHLHYPQIRMALRLGANAL 100 (312)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEE
T ss_pred CCCchhhHHHHHHHHHCCCeEE
Confidence 9999877777765 68898877
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00019 Score=70.97 Aligned_cols=86 Identities=17% Similarity=0.223 Sum_probs=58.7
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccC--CCCCEEEEcCCCc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCLPHG 140 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~al~~~ 140 (406)
++||+|+| .|.+|+..++.|..+|.++++++.++...-..... .+ .+..+.+. ++.+ .++|+|+.|+|+.
T Consensus 5 ~~~vgiiG-~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~---~~---g~~~~~~~-~~ll~~~~~D~V~i~tp~~ 76 (359)
T 3e18_A 5 KYQLVIVG-YGGMGSYHVTLASAADNLEVHGVFDILAEKREAAA---QK---GLKIYESY-EAVLADEKVDAVLIATPND 76 (359)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHH---TT---TCCBCSCH-HHHHHCTTCCEEEECSCGG
T ss_pred cCcEEEEC-cCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHH---hc---CCceeCCH-HHHhcCCCCCEEEEcCCcH
Confidence 58999999 89999999999999999999999875432111100 01 11111111 1111 3789999999998
Q ss_pred chHHHHhh-CCCCCEEE
Q 015441 141 TTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 141 ~s~~~~~~-l~~G~~VI 156 (406)
.-.+++.+ +++|+.|+
T Consensus 77 ~h~~~~~~al~aGkhVl 93 (359)
T 3e18_A 77 SHKELAISALEAGKHVV 93 (359)
T ss_dssp GHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHCCCCEE
Confidence 87787765 58898766
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00032 Score=67.52 Aligned_cols=86 Identities=13% Similarity=0.271 Sum_probs=59.0
Q ss_pred cCCccEEEEECcccHHHHHHHHHHHc---CCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEc
Q 015441 60 SEKQVRIGLLGASGYTGAEIVRLLAN---HPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCC 136 (406)
Q Consensus 60 ~~~~ikVaIvGATG~vG~eLlrlL~~---hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~a 136 (406)
+.+++||+|+| .|.+|+..++.|.. ++.++++++.+++...+... . ....++++ . .-.++|+|+.|
T Consensus 4 ~~~~~rvgiIG-~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a~~~g-----~---~~~~~~el-l-~~~~vD~V~i~ 72 (294)
T 1lc0_A 4 NSGKFGVVVVG-VGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDE-----V---RQISLEDA-L-RSQEIDVAYIC 72 (294)
T ss_dssp CCCSEEEEEEC-CSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCCEETT-----E---EBCCHHHH-H-HCSSEEEEEEC
T ss_pred CCCcceEEEEE-EcHHHHHHHHHHhccccCCCEEEEEEECchHHHHHcC-----C---CCCCHHHH-h-cCCCCCEEEEe
Confidence 34578999999 79999999998876 68899999998654322111 0 00111111 0 01368999999
Q ss_pred CCCcchHHHHhh-CCCCCEEE
Q 015441 137 LPHGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 137 l~~~~s~~~~~~-l~~G~~VI 156 (406)
+|+..-.+++.+ +++|+.|+
T Consensus 73 tp~~~H~~~~~~al~aGkhVl 93 (294)
T 1lc0_A 73 SESSSHEDYIRQFLQAGKHVL 93 (294)
T ss_dssp SCGGGHHHHHHHHHHTTCEEE
T ss_pred CCcHhHHHHHHHHHHCCCcEE
Confidence 998877777764 58898766
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00035 Score=66.58 Aligned_cols=93 Identities=17% Similarity=0.281 Sum_probs=58.9
Q ss_pred ccCCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcC
Q 015441 59 KSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCL 137 (406)
Q Consensus 59 ~~~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al 137 (406)
++.||+||+|+|+||.+|+.+.+.|.... .+++. .+++.. -+.+.. . + +. .... .+.+.++|+||+|+
T Consensus 7 ~~~mmm~I~iIG~tG~mG~~la~~l~~~g-~~V~~-~~r~~~~~~~~~~-~----g--~~-~~~~-~~~~~~aDvVi~av 75 (286)
T 3c24_A 7 NDVGPKTVAILGAGGKMGARITRKIHDSA-HHLAA-IEIAPEGRDRLQG-M----G--IP-LTDG-DGWIDEADVVVLAL 75 (286)
T ss_dssp CSCCCCEEEEETTTSHHHHHHHHHHHHSS-SEEEE-ECCSHHHHHHHHH-T----T--CC-CCCS-SGGGGTCSEEEECS
T ss_pred ccccCCEEEEECCCCHHHHHHHHHHHhCC-CEEEE-EECCHHHHHHHHh-c----C--CC-cCCH-HHHhcCCCEEEEcC
Confidence 33456799999988999999999998654 46654 343211 011111 0 1 11 1111 22346899999999
Q ss_pred CCcchHHHHhh----CCCCCEEEEcCCcc
Q 015441 138 PHGTTQEIIKG----LPKSLKIVDLSADF 162 (406)
Q Consensus 138 ~~~~s~~~~~~----l~~G~~VIDlSa~f 162 (406)
+.....+.++. +..+..|||.|...
T Consensus 76 ~~~~~~~v~~~l~~~l~~~~ivv~~s~~~ 104 (286)
T 3c24_A 76 PDNIIEKVAEDIVPRVRPGTIVLILDAAA 104 (286)
T ss_dssp CHHHHHHHHHHHGGGSCTTCEEEESCSHH
T ss_pred CchHHHHHHHHHHHhCCCCCEEEECCCCc
Confidence 98776665543 34688999988865
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00016 Score=71.23 Aligned_cols=87 Identities=20% Similarity=0.290 Sum_probs=59.0
Q ss_pred CccEEEEECcccHHHH-HHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccC--CCCCEEEEcC
Q 015441 62 KQVRIGLLGASGYTGA-EIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCL 137 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~-eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~al 137 (406)
+++||+||| +|.+|+ .+++.|..+|.++++++.++... .+.+...+ .++.+.++ ++.+ .++|+|+.|+
T Consensus 26 ~~~rigiIG-~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~------g~~~~~~~-~~ll~~~~~D~V~i~t 97 (350)
T 3rc1_A 26 NPIRVGVIG-CADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERF------GGEPVEGY-PALLERDDVDAVYVPL 97 (350)
T ss_dssp CCEEEEEES-CCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHH------CSEEEESH-HHHHTCTTCSEEEECC
T ss_pred CceEEEEEc-CcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHc------CCCCcCCH-HHHhcCCCCCEEEECC
Confidence 358999999 899998 79999999999999999875421 11111111 11111111 1112 3689999999
Q ss_pred CCcchHHHHhh-CCCCCEEE
Q 015441 138 PHGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 138 ~~~~s~~~~~~-l~~G~~VI 156 (406)
|+..-.+++.+ +++|+.|+
T Consensus 98 p~~~h~~~~~~al~aGk~Vl 117 (350)
T 3rc1_A 98 PAVLHAEWIDRALRAGKHVL 117 (350)
T ss_dssp CGGGHHHHHHHHHHTTCEEE
T ss_pred CcHHHHHHHHHHHHCCCcEE
Confidence 99988887765 58888766
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00039 Score=62.77 Aligned_cols=90 Identities=20% Similarity=0.267 Sum_probs=52.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccc-cCcc--ccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVF-PHLI--SQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~-p~l~--~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
|||.|.||||++|+.|++.|++.. .+++.+..+... ..... +.+. ..|+. +.+...+.++|+||.|++..
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~---~~~~~~~~~~~~~~D~~---d~~~~~~~~~d~vi~~ag~~ 73 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRG-HEVLAVVRDPQK---AADRLGATVATLVKEPL---VLTEADLDSVDAVVDALSVP 73 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH---HHHHTCTTSEEEECCGG---GCCHHHHTTCSEEEECCCCC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCC-CEEEEEEecccc---cccccCCCceEEecccc---cccHhhcccCCEEEECCccC
Confidence 479999999999999999998764 577777532111 11000 0010 11221 11113457899999999763
Q ss_pred -----------chHHHHhhC-CCCCEEEEcCC
Q 015441 141 -----------TTQEIIKGL-PKSLKIVDLSA 160 (406)
Q Consensus 141 -----------~s~~~~~~l-~~G~~VIDlSa 160 (406)
.+..+++++ ++|.++|=+|+
T Consensus 74 ~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS 105 (224)
T 3h2s_A 74 WGSGRGYLHLDFATHLVSLLRNSDTLAVFILG 105 (224)
T ss_dssp TTSSCTHHHHHHHHHHHHTCTTCCCEEEEECC
T ss_pred CCcchhhHHHHHHHHHHHHHHHcCCcEEEEec
Confidence 113344544 44666776665
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00036 Score=67.93 Aligned_cols=92 Identities=17% Similarity=0.180 Sum_probs=59.8
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCc--c-----cCCCCCEEE
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKD--A-----DFSNVDAVF 134 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~--~-----~~~~vDvVF 134 (406)
+|+||||||+.|++|+..++.|... ..+++++.++...-......++... ....++++-. + .-.++|+|+
T Consensus 2 ~mirvgiIG~gG~i~~~h~~~l~~~-~~~lvav~d~~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~l~~~~~~~vD~V~ 78 (318)
T 3oa2_A 2 HMKNFALIGAAGYIAPRHMRAIKDT-GNCLVSAYDINDSVGIIDSISPQSE--FFTEFEFFLDHASNLKRDSATALDYVS 78 (318)
T ss_dssp -CCEEEEETTTSSSHHHHHHHHHHT-TCEEEEEECSSCCCGGGGGTCTTCE--EESSHHHHHHHHHHHTTSTTTSCCEEE
T ss_pred CceEEEEECCCcHHHHHHHHHHHhC-CCEEEEEEcCCHHHHHHHhhCCCCc--EECCHHHHHHhhhhhhhccCCCCcEEE
Confidence 4689999997799999999999876 6899999986543222222222111 0011111100 0 014789999
Q ss_pred EcCCCcchHHHHhh-CCCCCEEE
Q 015441 135 CCLPHGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 135 ~al~~~~s~~~~~~-l~~G~~VI 156 (406)
.|+|+..=.+++.+ +++|+.|+
T Consensus 79 I~tP~~~H~~~~~~al~aGkhVl 101 (318)
T 3oa2_A 79 ICSPNYLHYPHIAAGLRLGCDVI 101 (318)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEE
T ss_pred ECCCcHHHHHHHHHHHHCCCeEE
Confidence 99999877777764 68898876
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00039 Score=68.05 Aligned_cols=83 Identities=16% Similarity=0.234 Sum_probs=57.6
Q ss_pred ccEEEEECcccHHHH-HHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 63 QVRIGLLGASGYTGA-EIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 63 ~ikVaIvGATG~vG~-eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
++||+|+| +|.+|+ ..++.|..+|.+++++++++...-..+. .+ ..++++ -++..++|+|+.|+|+..
T Consensus 25 ~~rvgiiG-~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~~g~~----~~-----~~~~~l-l~~~~~vD~V~i~tp~~~ 93 (330)
T 4ew6_A 25 PINLAIVG-VGKIVRDQHLPSIAKNANFKLVATASRHGTVEGVN----SY-----TTIEAM-LDAEPSIDAVSLCMPPQY 93 (330)
T ss_dssp CEEEEEEC-CSHHHHHTHHHHHHHCTTEEEEEEECSSCCCTTSE----EE-----SSHHHH-HHHCTTCCEEEECSCHHH
T ss_pred CceEEEEe-cCHHHHHHHHHHHHhCCCeEEEEEEeCChhhcCCC----cc-----CCHHHH-HhCCCCCCEEEEeCCcHH
Confidence 48999999 799998 7999999999999999998653211010 00 011111 001136899999999887
Q ss_pred hHHHHhh-CCCCCEEE
Q 015441 142 TQEIIKG-LPKSLKIV 156 (406)
Q Consensus 142 s~~~~~~-l~~G~~VI 156 (406)
-.+++.+ +++|+.|+
T Consensus 94 H~~~~~~al~aGkhVl 109 (330)
T 4ew6_A 94 RYEAAYKALVAGKHVF 109 (330)
T ss_dssp HHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHcCCcEE
Confidence 7777764 58898877
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00035 Score=68.95 Aligned_cols=89 Identities=12% Similarity=0.167 Sum_probs=59.5
Q ss_pred CccEEEEECcccHHHHHHHHHHH-cCCCceEEEEeccCcCC-ccccccccCccccCCCcccccCcccC--CCCCEEEEcC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLA-NHPYFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCL 137 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~-~hp~~elv~l~s~~~~G-~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~al 137 (406)
|++||+||| +|.+|+..++.|. .+|.++++++.++...- +.+...++ .....+.++ ++.+ .++|+|+.|+
T Consensus 22 ~~~rvgiIG-~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g----~~~~~~~~~-~~ll~~~~~D~V~i~t 95 (357)
T 3ec7_A 22 MTLKAGIVG-IGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYA----IEAKDYNDY-HDLINDKDVEVVIITA 95 (357)
T ss_dssp CCEEEEEEC-CSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHT----CCCEEESSH-HHHHHCTTCCEEEECS
T ss_pred CeeeEEEEC-CcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhC----CCCeeeCCH-HHHhcCCCCCEEEEcC
Confidence 357999999 7999999999998 78999999998764321 11111111 001111111 1111 3689999999
Q ss_pred CCcchHHHHhh-CCCCCEEE
Q 015441 138 PHGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 138 ~~~~s~~~~~~-l~~G~~VI 156 (406)
|+..-.+++.+ +++|+.|+
T Consensus 96 p~~~h~~~~~~al~aGk~Vl 115 (357)
T 3ec7_A 96 SNEAHADVAVAALNANKYVF 115 (357)
T ss_dssp CGGGHHHHHHHHHHTTCEEE
T ss_pred CcHHHHHHHHHHHHCCCCEE
Confidence 99888887765 58888766
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00022 Score=69.49 Aligned_cols=88 Identities=10% Similarity=0.129 Sum_probs=59.1
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccC--CCCCEEEEcCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCLP 138 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~al~ 138 (406)
+++||+|+| +|.+|+.+++.|..+|.++++++.++... .+.+...++ . . ..+.+. ++.+ .++|+|+.|+|
T Consensus 4 ~~~~igiiG-~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~---~-~-~~~~~~-~~ll~~~~~D~V~i~tp 76 (330)
T 3e9m_A 4 DKIRYGIMS-TAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELA---I-P-VAYGSY-EELCKDETIDIIYIPTY 76 (330)
T ss_dssp CCEEEEECS-CCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTT---C-C-CCBSSH-HHHHHCTTCSEEEECCC
T ss_pred CeEEEEEEC-chHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcC---C-C-ceeCCH-HHHhcCCCCCEEEEcCC
Confidence 458999999 69999999999999999999999875431 111111111 0 0 011111 1111 37899999999
Q ss_pred CcchHHHHhh-CCCCCEEE
Q 015441 139 HGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 139 ~~~s~~~~~~-l~~G~~VI 156 (406)
+..-.+++.. +++|+.|+
T Consensus 77 ~~~h~~~~~~al~~gk~vl 95 (330)
T 3e9m_A 77 NQGHYSAAKLALSQGKPVL 95 (330)
T ss_dssp GGGHHHHHHHHHHTTCCEE
T ss_pred CHHHHHHHHHHHHCCCeEE
Confidence 9988887765 57887665
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0003 Score=70.35 Aligned_cols=88 Identities=11% Similarity=0.269 Sum_probs=55.6
Q ss_pred cCCccEEEEECcccHHHHHHHHHHHcCC-CceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcC
Q 015441 60 SEKQVRIGLLGASGYTGAEIVRLLANHP-YFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCL 137 (406)
Q Consensus 60 ~~~~ikVaIvGATG~vG~eLlrlL~~hp-~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al 137 (406)
+..++||+|+| +|+ |+.-++.+.+.| .+|++++.++... .+.+..-+ .++.+.+. ++.++++|+|+.|+
T Consensus 4 ~~~~~rv~VvG-~G~-g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~------gv~~~~~~-~~l~~~~D~v~i~~ 74 (372)
T 4gmf_A 4 ASPKQRVLIVG-AKF-GEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAF------GIPLYTSP-EQITGMPDIACIVV 74 (372)
T ss_dssp ---CEEEEEEC-STT-THHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHT------TCCEESSG-GGCCSCCSEEEECC
T ss_pred CCCCCEEEEEe-hHH-HHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHh------CCCEECCH-HHHhcCCCEEEEEC
Confidence 34568999999 786 999899888776 5999999986532 12222211 11222222 22346799999999
Q ss_pred CCcch----HHHHhh-CCCCCEEE
Q 015441 138 PHGTT----QEIIKG-LPKSLKIV 156 (406)
Q Consensus 138 ~~~~s----~~~~~~-l~~G~~VI 156 (406)
|+..- .+++.+ +++|+.|+
T Consensus 75 p~~~h~~~~~~~a~~al~aGkhVl 98 (372)
T 4gmf_A 75 RSTVAGGAGTQLARHFLARGVHVI 98 (372)
T ss_dssp C--CTTSHHHHHHHHHHHTTCEEE
T ss_pred CCcccchhHHHHHHHHHHcCCcEE
Confidence 97653 566654 58899876
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00032 Score=68.39 Aligned_cols=88 Identities=11% Similarity=0.184 Sum_probs=57.8
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCC--CceEEEEeccCcC-CccccccccCccccCCCcccccCcccC--CCCCEEEEc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHP--YFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCC 136 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp--~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~a 136 (406)
||+||||+| +|.+|+..++.|..+| .++++++.++... .+.+...++ . . ..+.+. ++.+ .++|+|+.|
T Consensus 1 M~~rigiiG-~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~---~-~-~~~~~~-~~ll~~~~vD~V~i~ 73 (334)
T 3ohs_X 1 MALRWGIVS-VGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHD---I-P-KAYGSY-EELAKDPNVEVAYVG 73 (334)
T ss_dssp -CEEEEEEC-CSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHT---C-S-CEESSH-HHHHHCTTCCEEEEC
T ss_pred CccEEEEEC-chHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcC---C-C-cccCCH-HHHhcCCCCCEEEEC
Confidence 578999999 8999999999998877 4789999876421 111111110 0 0 011111 1111 379999999
Q ss_pred CCCcchHHHHhh-CCCCCEEE
Q 015441 137 LPHGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 137 l~~~~s~~~~~~-l~~G~~VI 156 (406)
+|+..-.+++.+ +++|+.|+
T Consensus 74 tp~~~H~~~~~~al~~GkhVl 94 (334)
T 3ohs_X 74 TQHPQHKAAVMLCLAAGKAVL 94 (334)
T ss_dssp CCGGGHHHHHHHHHHTTCEEE
T ss_pred CCcHHHHHHHHHHHhcCCEEE
Confidence 999887787765 58898776
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00075 Score=59.71 Aligned_cols=31 Identities=19% Similarity=0.450 Sum_probs=26.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
++|.|.||||++|+.+++.|.+.. .+++.+.
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g-~~V~~~~ 34 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAG-YEVTVLV 34 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCC-CeEEEEE
Confidence 589999999999999999998764 5777665
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00026 Score=69.76 Aligned_cols=93 Identities=17% Similarity=0.235 Sum_probs=59.2
Q ss_pred cCCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccC--CCCCEEEEc
Q 015441 60 SEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCC 136 (406)
Q Consensus 60 ~~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~a 136 (406)
+.+++||+|+| +|.+|+.+++.|..+|.++++++.+++.. .+.+...++. . .....+.+. ++.+ .++|+|+.|
T Consensus 3 ~~~~~~vgiiG-~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~-~-~~~~~~~~~-~~ll~~~~~D~V~i~ 78 (362)
T 1ydw_A 3 TETQIRIGVMG-CADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNY-P-ESTKIHGSY-ESLLEDPEIDALYVP 78 (362)
T ss_dssp ---CEEEEEES-CCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTC-C-TTCEEESSH-HHHHHCTTCCEEEEC
T ss_pred CCCceEEEEEC-chHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCC-C-CCCeeeCCH-HHHhcCCCCCEEEEc
Confidence 34568999999 69999999999999999999999875431 1111111110 0 000111111 1112 368999999
Q ss_pred CCCcchHHHHhh-CCCCCEEE
Q 015441 137 LPHGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 137 l~~~~s~~~~~~-l~~G~~VI 156 (406)
+|+..-.+++.+ +++|+.|+
T Consensus 79 tp~~~h~~~~~~al~aGk~V~ 99 (362)
T 1ydw_A 79 LPTSLHVEWAIKAAEKGKHIL 99 (362)
T ss_dssp CCGGGHHHHHHHHHTTTCEEE
T ss_pred CChHHHHHHHHHHHHCCCeEE
Confidence 999888787765 58898776
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00047 Score=66.69 Aligned_cols=85 Identities=18% Similarity=0.327 Sum_probs=57.3
Q ss_pred ccEEEEECcccHHHHH-HHHHHHcCCCceEEEEeccCcCC-ccccccccCccccCCCcccccCcccC-CCCCEEEEcCCC
Q 015441 63 QVRIGLLGASGYTGAE-IVRLLANHPYFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDADF-SNVDAVFCCLPH 139 (406)
Q Consensus 63 ~ikVaIvGATG~vG~e-LlrlL~~hp~~elv~l~s~~~~G-~~i~~v~p~l~~~~~~~~~~~~~~~~-~~vDvVF~al~~ 139 (406)
++||+|+| +|.+|+. +++.|..+|.++++++.++...- +.+...+ + .+..... +++ .++|+|+.|+|+
T Consensus 5 ~~~vgiiG-~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~----g--~~~~~~~--~~l~~~~D~V~i~tp~ 75 (319)
T 1tlt_A 5 KLRIGVVG-LGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESW----R--IPYADSL--SSLAASCDAVFVHSST 75 (319)
T ss_dssp CEEEEEEC-CSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHH----T--CCBCSSH--HHHHTTCSEEEECSCT
T ss_pred cceEEEEC-CCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHc----C--CCccCcH--HHhhcCCCEEEEeCCc
Confidence 57999999 5999996 99999888999999998754321 1111111 1 1111111 112 478999999998
Q ss_pred cchHHHHhh-CCCCCEEE
Q 015441 140 GTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 140 ~~s~~~~~~-l~~G~~VI 156 (406)
..-.+++.. +++|+.|+
T Consensus 76 ~~h~~~~~~al~~G~~v~ 93 (319)
T 1tlt_A 76 ASHFDVVSTLLNAGVHVC 93 (319)
T ss_dssp THHHHHHHHHHHTTCEEE
T ss_pred hhHHHHHHHHHHcCCeEE
Confidence 877777764 57888655
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00026 Score=68.49 Aligned_cols=86 Identities=19% Similarity=0.253 Sum_probs=58.1
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccC--CCCCEEEEcC
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCL 137 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~al 137 (406)
.+++||+|+| +|.+|+.+++.|.++|.++++++.++... .+.+.. . .+.+.+. ++.+ .++|+|+.|+
T Consensus 8 ~~~~~igiIG-~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~-------~-~~~~~~~-~~~l~~~~~D~V~i~t 77 (315)
T 3c1a_A 8 NSPVRLALIG-AGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPP-------G-CVIESDW-RSVVSAPEVEAVIIAT 77 (315)
T ss_dssp -CCEEEEEEE-CTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCT-------T-CEEESST-HHHHTCTTCCEEEEES
T ss_pred CCcceEEEEC-CcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHh-------h-CcccCCH-HHHhhCCCCCEEEEeC
Confidence 4568999999 69999999999998899999999875421 011110 0 1111111 1112 3789999999
Q ss_pred CCcchHHHHhh-CCCCCEEE
Q 015441 138 PHGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 138 ~~~~s~~~~~~-l~~G~~VI 156 (406)
|+..-.+++.. +++|+.|+
T Consensus 78 p~~~h~~~~~~al~~Gk~v~ 97 (315)
T 3c1a_A 78 PPATHAEITLAAIASGKAVL 97 (315)
T ss_dssp CGGGHHHHHHHHHHTTCEEE
T ss_pred ChHHHHHHHHHHHHCCCcEE
Confidence 99887777765 57888665
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0007 Score=60.71 Aligned_cols=91 Identities=18% Similarity=0.306 Sum_probs=53.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCcc--ccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLI--SQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~--~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
|||.|.||||++|+.|++.|++.. .+++.+..+.. +.....+.+. ..|+. +.+...+.++|+||.|++...
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~---~~~~~~~~~~~~~~D~~---d~~~~~~~~~d~vi~~ag~~~ 73 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRG-HEVTAIVRNAG---KITQTHKDINILQKDIF---DLTLSDLSDQNVVVDAYGISP 73 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCSH---HHHHHCSSSEEEECCGG---GCCHHHHTTCSEEEECCCSST
T ss_pred CeEEEEcCCchhHHHHHHHHHhCC-CEEEEEEcCch---hhhhccCCCeEEecccc---ChhhhhhcCCCEEEECCcCCc
Confidence 479999999999999999998764 57777753221 1111001111 11221 111134578999999997642
Q ss_pred h---------HHHHhhC-CC-CCEEEEcCCc
Q 015441 142 T---------QEIIKGL-PK-SLKIVDLSAD 161 (406)
Q Consensus 142 s---------~~~~~~l-~~-G~~VIDlSa~ 161 (406)
. +.+++++ ++ ..++|-.|+.
T Consensus 74 ~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~ 104 (221)
T 3ew7_A 74 DEAEKHVTSLDHLISVLNGTVSPRLLVVGGA 104 (221)
T ss_dssp TTTTSHHHHHHHHHHHHCSCCSSEEEEECCC
T ss_pred cccchHHHHHHHHHHHHHhcCCceEEEEecc
Confidence 2 3444544 34 3566656654
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0002 Score=70.40 Aligned_cols=88 Identities=13% Similarity=0.160 Sum_probs=59.5
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcC-CCceEEEEeccCcCC-ccccccccCccccCCCcccccCcccC--CCCCEEEEc
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANH-PYFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCC 136 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~h-p~~elv~l~s~~~~G-~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~a 136 (406)
.+|+||+|+| +|.+|+..++.|..+ |.++++++.++...- +.+...+ + +..+.+. ++.+ .++|+|+.|
T Consensus 11 ~~~~rvgiiG-~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~----~--~~~~~~~-~~ll~~~~~D~V~i~ 82 (354)
T 3q2i_A 11 DRKIRFALVG-CGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERT----G--ARGHASL-TDMLAQTDADIVILT 82 (354)
T ss_dssp SSCEEEEEEC-CSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHH----C--CEEESCH-HHHHHHCCCSEEEEC
T ss_pred CCcceEEEEc-CcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHc----C--CceeCCH-HHHhcCCCCCEEEEC
Confidence 3568999999 799999999999987 899999998754311 1111111 0 1111111 1112 379999999
Q ss_pred CCCcchHHHHhh-CCCCCEEE
Q 015441 137 LPHGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 137 l~~~~s~~~~~~-l~~G~~VI 156 (406)
+|+..-.+++.+ +++|+.|+
T Consensus 83 tp~~~h~~~~~~al~~gk~v~ 103 (354)
T 3q2i_A 83 TPSGLHPTQSIECSEAGFHVM 103 (354)
T ss_dssp SCGGGHHHHHHHHHHTTCEEE
T ss_pred CCcHHHHHHHHHHHHCCCCEE
Confidence 999887777764 58888776
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.001 Score=65.61 Aligned_cols=84 Identities=12% Similarity=0.156 Sum_probs=57.7
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCC--------CceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEE
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHP--------YFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVF 134 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp--------~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF 134 (406)
++||+|+| +|.+|+.+++.|.+++ .++++++++++.. +. .. +.. . ....+. ++.+ ++|+|+
T Consensus 3 ~irvgIiG-~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~-~~-~~----~~~-~-~~~~d~-~~ll-~iDvVv 71 (332)
T 2ejw_A 3 ALKIALLG-GGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPR-KP-RA----IPQ-E-LLRAEP-FDLL-EADLVV 71 (332)
T ss_dssp EEEEEEEC-CSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTT-SC-CS----SCG-G-GEESSC-CCCT-TCSEEE
T ss_pred eeEEEEEc-CCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHH-Hh-hc----cCc-c-cccCCH-HHHh-CCCEEE
Confidence 58999999 9999999999999877 6899999876532 11 00 100 0 001111 1223 899999
Q ss_pred EcCCCc-chHHHHh-hCCCCCEEEE
Q 015441 135 CCLPHG-TTQEIIK-GLPKSLKIVD 157 (406)
Q Consensus 135 ~al~~~-~s~~~~~-~l~~G~~VID 157 (406)
.|+|+. ...+++. ++++|+.||-
T Consensus 72 e~t~~~~~a~~~~~~AL~aGKhVVt 96 (332)
T 2ejw_A 72 EAMGGVEAPLRLVLPALEAGIPLIT 96 (332)
T ss_dssp ECCCCSHHHHHHHHHHHHTTCCEEE
T ss_pred ECCCCcHHHHHHHHHHHHcCCeEEE
Confidence 999977 4566765 5789998883
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00027 Score=67.28 Aligned_cols=92 Identities=12% Similarity=0.206 Sum_probs=52.2
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
||+||+|+| .|.+|+.+++.|... .+++.+.+++.. -+.+...+ +. ...+. .+...++|+||+|+|..
T Consensus 1 M~m~I~iIG-~G~mG~~la~~l~~~--~~v~~v~~~~~~~~~~~~~~~----g~---~~~~~-~~~~~~~DvVilav~~~ 69 (276)
T 2i76_A 1 MSLVLNFVG-TGTLTRFFLECLKDR--YEIGYILSRSIDRARNLAEVY----GG---KAATL-EKHPELNGVVFVIVPDR 69 (276)
T ss_dssp ---CCEEES-CCHHHHHHHHTTC------CCCEECSSHHHHHHHHHHT----CC---CCCSS-CCCCC---CEEECSCTT
T ss_pred CCceEEEEe-CCHHHHHHHHHHHHc--CcEEEEEeCCHHHHHHHHHHc----CC---ccCCH-HHHHhcCCEEEEeCChH
Confidence 457999999 699999999988765 566445554321 01111111 10 11111 12245789999999998
Q ss_pred chHHHHhhC-CCCCEEEEcCCcccC
Q 015441 141 TTQEIIKGL-PKSLKIVDLSADFRL 164 (406)
Q Consensus 141 ~s~~~~~~l-~~G~~VIDlSa~fRl 164 (406)
...++++.+ ..+..|||.|+....
T Consensus 70 ~~~~v~~~l~~~~~ivi~~s~~~~~ 94 (276)
T 2i76_A 70 YIKTVANHLNLGDAVLVHCSGFLSS 94 (276)
T ss_dssp THHHHHTTTCCSSCCEEECCSSSCG
T ss_pred HHHHHHHHhccCCCEEEECCCCCcH
Confidence 877777766 457788999976543
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00051 Score=66.96 Aligned_cols=89 Identities=18% Similarity=0.201 Sum_probs=58.4
Q ss_pred CCccEEEEECcccHHHHHHHHHHH-cCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccC--CCCCEEEEc
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLA-NHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCC 136 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~-~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~a 136 (406)
.+++||+|+| +|.+|+..++.|. .++.++++++.++... .+.+...+ +.. ..+.+. .+.+ .++|+|+.|
T Consensus 6 ~~~~~v~iiG-~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~----g~~-~~~~~~-~~~l~~~~~D~V~i~ 78 (346)
T 3cea_A 6 RKPLRAAIIG-LGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNEL----GVE-TTYTNY-KDMIDTENIDAIFIV 78 (346)
T ss_dssp CCCEEEEEEC-CSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTT----CCS-EEESCH-HHHHTTSCCSEEEEC
T ss_pred CCcceEEEEc-CCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHh----CCC-cccCCH-HHHhcCCCCCEEEEe
Confidence 4568999999 6999999999998 8899999999875431 11111111 000 011111 1112 268999999
Q ss_pred CCCcchHHHHhh-CCCCCEEE
Q 015441 137 LPHGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 137 l~~~~s~~~~~~-l~~G~~VI 156 (406)
+|+..-.+++.. +++|+.|+
T Consensus 79 tp~~~h~~~~~~al~~G~~v~ 99 (346)
T 3cea_A 79 APTPFHPEMTIYAMNAGLNVF 99 (346)
T ss_dssp SCGGGHHHHHHHHHHTTCEEE
T ss_pred CChHhHHHHHHHHHHCCCEEE
Confidence 999877777754 57888766
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00079 Score=66.46 Aligned_cols=87 Identities=18% Similarity=0.237 Sum_probs=58.3
Q ss_pred ccEEEEECcccHHHHH-HHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccC--CCCCEEEEcCC
Q 015441 63 QVRIGLLGASGYTGAE-IVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCLP 138 (406)
Q Consensus 63 ~ikVaIvGATG~vG~e-LlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~al~ 138 (406)
++||+||| +|.+|+. +++.|..+|.++++++.++... .+.+...++. ...+.++ ++.+ .++|+|+.|+|
T Consensus 5 ~~rigiIG-~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~-----~~~~~~~-~~ll~~~~vD~V~i~tp 77 (359)
T 3m2t_A 5 LIKVGLVG-IGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISD-----IPVLDNV-PAMLNQVPLDAVVMAGP 77 (359)
T ss_dssp CEEEEEEC-CSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCS-----CCEESSH-HHHHHHSCCSEEEECSC
T ss_pred cceEEEEC-CCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCC-----CcccCCH-HHHhcCCCCCEEEEcCC
Confidence 47999999 8999986 8999999999999999875431 1122211111 0111111 1111 36899999999
Q ss_pred CcchHHHHhh-CCCCCEEE
Q 015441 139 HGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 139 ~~~s~~~~~~-l~~G~~VI 156 (406)
+..-.+++.+ +++|+.|+
T Consensus 78 ~~~H~~~~~~al~aGkhVl 96 (359)
T 3m2t_A 78 PQLHFEMGLLAMSKGVNVF 96 (359)
T ss_dssp HHHHHHHHHHHHHTTCEEE
T ss_pred cHHHHHHHHHHHHCCCeEE
Confidence 8877777764 58898776
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00077 Score=65.34 Aligned_cols=87 Identities=14% Similarity=0.188 Sum_probs=55.9
Q ss_pred CccEEEEECcccHHHHH-HHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccC-CCCCEEEEcCC
Q 015441 62 KQVRIGLLGASGYTGAE-IVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADF-SNVDAVFCCLP 138 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~e-LlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~-~~vDvVF~al~ 138 (406)
||+||+||| +|.+|+. +++.|..+|.++++ +.++... .+.+...++ . .. .+.+. .+.+ .++|+|+.|+|
T Consensus 1 m~~~igiIG-~G~ig~~~~~~~l~~~~~~~l~-v~d~~~~~~~~~a~~~g---~-~~-~~~~~-~~~l~~~~D~V~i~tp 72 (323)
T 1xea_A 1 MSLKIAMIG-LGDIAQKAYLPVLAQWPDIELV-LCTRNPKVLGTLATRYR---V-SA-TCTDY-RDVLQYGVDAVMIHAA 72 (323)
T ss_dssp -CEEEEEEC-CCHHHHHTHHHHHTTSTTEEEE-EECSCHHHHHHHHHHTT---C-CC-CCSST-TGGGGGCCSEEEECSC
T ss_pred CCcEEEEEC-CCHHHHHHHHHHHHhCCCceEE-EEeCCHHHHHHHHHHcC---C-Cc-cccCH-HHHhhcCCCEEEEECC
Confidence 568999999 6999984 99999888999999 8765421 111111111 0 00 01111 1122 47899999999
Q ss_pred CcchHHHHh-hCCCCCEEE
Q 015441 139 HGTTQEIIK-GLPKSLKIV 156 (406)
Q Consensus 139 ~~~s~~~~~-~l~~G~~VI 156 (406)
+..-.+++. ++++|+.|+
T Consensus 73 ~~~h~~~~~~al~~Gk~V~ 91 (323)
T 1xea_A 73 TDVHSTLAAFFLHLGIPTF 91 (323)
T ss_dssp GGGHHHHHHHHHHTTCCEE
T ss_pred chhHHHHHHHHHHCCCeEE
Confidence 888777775 457887655
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00055 Score=69.63 Aligned_cols=93 Identities=17% Similarity=0.145 Sum_probs=59.1
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-ccccccccCccccCCCccc----ccCcccC--CCCCEEE
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMV----AVKDADF--SNVDAVF 134 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-~~i~~v~p~l~~~~~~~~~----~~~~~~~--~~vDvVF 134 (406)
+++||+||| +|.+|+..++.|..+|.++++++.++...- +.+...+..+.......+. +. ++.+ .++|+|+
T Consensus 19 ~~~rvgiIG-~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~-~~ll~~~~vD~V~ 96 (444)
T 2ixa_A 19 KKVRIAFIA-VGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDY-KNMLKDKNIDAVF 96 (444)
T ss_dssp CCEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTH-HHHTTCTTCCEEE
T ss_pred CCceEEEEe-cCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCH-HHHhcCCCCCEEE
Confidence 458999999 899999999999999999999999754311 1111100000000000111 11 1112 3689999
Q ss_pred EcCCCcchHHHHhh-CCCCCEEE
Q 015441 135 CCLPHGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 135 ~al~~~~s~~~~~~-l~~G~~VI 156 (406)
.|+|+..-.+++.+ +++|+.|+
T Consensus 97 i~tp~~~h~~~~~~al~aGkhV~ 119 (444)
T 2ixa_A 97 VSSPWEWHHEHGVAAMKAGKIVG 119 (444)
T ss_dssp ECCCGGGHHHHHHHHHHTTCEEE
T ss_pred EcCCcHHHHHHHHHHHHCCCeEE
Confidence 99998877777754 68898776
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00077 Score=68.47 Aligned_cols=93 Identities=13% Similarity=0.210 Sum_probs=59.1
Q ss_pred CCccEEEEECcccHHHH-HHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccC--CCCCEEEEc
Q 015441 61 EKQVRIGLLGASGYTGA-EIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCC 136 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~-eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~a 136 (406)
.+++||+||| +|.+|+ .+++.|..++.++++++.++... .+.+...++. .......+.+. ++.+ .++|+|+.|
T Consensus 81 ~~~irigiIG-~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~-~~~~~~~~~~~-~~ll~~~~vD~V~ia 157 (433)
T 1h6d_A 81 DRRFGYAIVG-LGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGV-DPRKIYDYSNF-DKIAKDPKIDAVYII 157 (433)
T ss_dssp CCCEEEEEEC-CSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTC-CGGGEECSSSG-GGGGGCTTCCEEEEC
T ss_pred CCceEEEEEC-CcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCC-CcccccccCCH-HHHhcCCCCCEEEEc
Confidence 3458999999 699997 89999988899999999875431 1111111110 00000011111 1112 378999999
Q ss_pred CCCcchHHHHhh-CCCCCEEE
Q 015441 137 LPHGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 137 l~~~~s~~~~~~-l~~G~~VI 156 (406)
+|+..-.+++.. +++|+.|+
T Consensus 158 tp~~~h~~~~~~al~aGk~Vl 178 (433)
T 1h6d_A 158 LPNSLHAEFAIRAFKAGKHVM 178 (433)
T ss_dssp SCGGGHHHHHHHHHHTTCEEE
T ss_pred CCchhHHHHHHHHHHCCCcEE
Confidence 999887777764 58898766
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00062 Score=66.48 Aligned_cols=34 Identities=15% Similarity=0.343 Sum_probs=29.1
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEec
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA 96 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s 96 (406)
|++|.|.||||++|+.|++.|.+.+..+++.+..
T Consensus 24 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r 57 (372)
T 3slg_A 24 AKKVLILGVNGFIGHHLSKRILETTDWEVFGMDM 57 (372)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEES
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeC
Confidence 4689999999999999999998766678887763
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00061 Score=67.01 Aligned_cols=92 Identities=14% Similarity=0.201 Sum_probs=56.5
Q ss_pred ccEEEEECcccHHHHHHHHHHHcC--------CCceEEEEeccCcCC-ccccccccCccc--cCCCcccccCccc-C--C
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANH--------PYFGIKLMTADRKAG-QSIGSVFPHLIS--QDLPTMVAVKDAD-F--S 128 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~h--------p~~elv~l~s~~~~G-~~i~~v~p~l~~--~~~~~~~~~~~~~-~--~ 128 (406)
|+||+|+| +|.+|+.+++.|.++ +.++++++++++..- ..++. -.++.. .........+.++ + .
T Consensus 2 mirvgIiG-~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~-~~~~~~~~~~~~~~~~~d~~~ll~~~ 79 (327)
T 3do5_A 2 MIKIAIVG-FGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSL-VEALRMKRETGMLRDDAKAIEVVRSA 79 (327)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCH-HHHHHHHHHHSSCSBCCCHHHHHHHS
T ss_pred cEEEEEEe-ccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCH-HHHHhhhccCccccCCCCHHHHhcCC
Confidence 68999999 999999999999987 899999999764211 00100 000000 0000000001111 1 4
Q ss_pred CCCEEEEcCCCcc----hHHHHh-hCCCCCEEE
Q 015441 129 NVDAVFCCLPHGT----TQEIIK-GLPKSLKIV 156 (406)
Q Consensus 129 ~vDvVF~al~~~~----s~~~~~-~l~~G~~VI 156 (406)
++|+|+.|+|+.. +.++.. ++++|+.||
T Consensus 80 ~iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhVv 112 (327)
T 3do5_A 80 DYDVLIEASVTRVDGGEGVNYIREALKRGKHVV 112 (327)
T ss_dssp CCSEEEECCCCC----CHHHHHHHHHTTTCEEE
T ss_pred CCCEEEECCCCcccchhHHHHHHHHHHCCCeEE
Confidence 6899999999764 355554 579999888
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.002 Score=62.59 Aligned_cols=96 Identities=15% Similarity=0.122 Sum_probs=57.1
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCccc-ccCcccCCCCCEEEEcCC
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMV-AVKDADFSNVDAVFCCLP 138 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~-~~~~~~~~~vDvVF~al~ 138 (406)
.|++||+|+| +|++|..+.+.|.+....++... +++.. -.+.......+..... .. .. .+...++|+||+|+|
T Consensus 22 ~M~m~IgvIG-~G~mG~~lA~~L~~~G~~~V~~~-dr~~~~~~~~~~~~~~~~~~g~--~~~s~-~e~~~~aDvVi~avp 96 (317)
T 4ezb_A 22 SMMTTIAFIG-FGEAAQSIAGGLGGRNAARLAAY-DLRFNDPAASGALRARAAELGV--EPLDD-VAGIACADVVLSLVV 96 (317)
T ss_dssp TSCCEEEEEC-CSHHHHHHHHHHHTTTCSEEEEE-CGGGGCTTTHHHHHHHHHHTTC--EEESS-GGGGGGCSEEEECCC
T ss_pred ccCCeEEEEC-ccHHHHHHHHHHHHcCCCeEEEE-eCCCccccchHHHHHHHHHCCC--CCCCH-HHHHhcCCEEEEecC
Confidence 4667999999 99999999999987642466544 33320 0000000000000011 11 11 233467999999999
Q ss_pred CcchHHHHh----hCCCCCEEEEcCCc
Q 015441 139 HGTTQEIIK----GLPKSLKIVDLSAD 161 (406)
Q Consensus 139 ~~~s~~~~~----~l~~G~~VIDlSa~ 161 (406)
.....+.+. .+..|..|||.|+-
T Consensus 97 ~~~~~~~~~~i~~~l~~~~ivv~~st~ 123 (317)
T 4ezb_A 97 GAATKAVAASAAPHLSDEAVFIDLNSV 123 (317)
T ss_dssp GGGHHHHHHHHGGGCCTTCEEEECCSC
T ss_pred CHHHHHHHHHHHhhcCCCCEEEECCCC
Confidence 887655443 34568899999874
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00067 Score=63.44 Aligned_cols=90 Identities=19% Similarity=0.367 Sum_probs=56.3
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
|+||+|+| +|.+|+.+++.|.... .++ .+.+++.. -+.+...+ + +....+. .+.+.++|+||.|+|...
T Consensus 3 ~m~i~iiG-~G~mG~~~a~~l~~~g-~~v-~~~~~~~~~~~~~~~~~----g--~~~~~~~-~~~~~~~D~Vi~~v~~~~ 72 (259)
T 2ahr_A 3 AMKIGIIG-VGKMASAIIKGLKQTP-HEL-IISGSSLERSKEIAEQL----A--LPYAMSH-QDLIDQVDLVILGIKPQL 72 (259)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHTTSS-CEE-EEECSSHHHHHHHHHHH----T--CCBCSSH-HHHHHTCSEEEECSCGGG
T ss_pred ccEEEEEC-CCHHHHHHHHHHHhCC-CeE-EEECCCHHHHHHHHHHc----C--CEeeCCH-HHHHhcCCEEEEEeCcHh
Confidence 46999999 8999999999998765 344 45544321 01111100 1 1111111 122357999999999776
Q ss_pred hHHHHhhCCCCCEEEEcCCcc
Q 015441 142 TQEIIKGLPKSLKIVDLSADF 162 (406)
Q Consensus 142 s~~~~~~l~~G~~VIDlSa~f 162 (406)
..+....+.+|..|||.++..
T Consensus 73 ~~~v~~~l~~~~~vv~~~~~~ 93 (259)
T 2ahr_A 73 FETVLKPLHFKQPIISMAAGI 93 (259)
T ss_dssp HHHHHTTSCCCSCEEECCTTC
T ss_pred HHHHHHHhccCCEEEEeCCCC
Confidence 677776676788899987654
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0013 Score=60.49 Aligned_cols=94 Identities=18% Similarity=0.265 Sum_probs=59.3
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
+|+||+|+| +|.+|+.+++.|.+.. .++..+.+++.. +.......+ + .... ..+.+...++|+||+|+|...
T Consensus 22 ~mmkI~IIG-~G~mG~~la~~l~~~g-~~V~~v~~r~~~--~~~~l~~~~-g--~~~~-~~~~~~~~~aDvVilavp~~~ 93 (220)
T 4huj_A 22 SMTTYAIIG-AGAIGSALAERFTAAQ-IPAIIANSRGPA--SLSSVTDRF-G--ASVK-AVELKDALQADVVILAVPYDS 93 (220)
T ss_dssp GSCCEEEEE-CHHHHHHHHHHHHHTT-CCEEEECTTCGG--GGHHHHHHH-T--TTEE-ECCHHHHTTSSEEEEESCGGG
T ss_pred cCCEEEEEC-CCHHHHHHHHHHHhCC-CEEEEEECCCHH--HHHHHHHHh-C--CCcc-cChHHHHhcCCEEEEeCChHH
Confidence 357999999 9999999999998653 466664554321 111100000 1 1101 111223468999999999887
Q ss_pred hHHHHhhCC--CCCEEEEcCCccc
Q 015441 142 TQEIIKGLP--KSLKIVDLSADFR 163 (406)
Q Consensus 142 s~~~~~~l~--~G~~VIDlSa~fR 163 (406)
..+.++.+. .+..|||.++.+-
T Consensus 94 ~~~v~~~l~~~~~~ivi~~~~g~~ 117 (220)
T 4huj_A 94 IADIVTQVSDWGGQIVVDASNAID 117 (220)
T ss_dssp HHHHHTTCSCCTTCEEEECCCCBC
T ss_pred HHHHHHHhhccCCCEEEEcCCCCC
Confidence 777776652 4678999998763
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00086 Score=64.64 Aligned_cols=91 Identities=14% Similarity=0.183 Sum_probs=58.9
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCC--CCCEEEEcCC
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFS--NVDAVFCCLP 138 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~--~vDvVF~al~ 138 (406)
++.+||+|+|+||..|+.+++.|.++ .+++++..+....|+.+ + + ++.+..+ .+... ++|+++.|+|
T Consensus 5 ~~~~rVaViG~sG~~G~~~~~~l~~~-g~~~V~~V~p~~~g~~~---~----G--~~vy~sl-~el~~~~~~D~viI~tP 73 (288)
T 2nu8_A 5 DKNTKVICQGFTGSQGTFHSEQAIAY-GTKMVGGVTPGKGGTTH---L----G--LPVFNTV-REAVAATGATASVIYVP 73 (288)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTTCEE---T----T--EEEESSH-HHHHHHHCCCEEEECCC
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHC-CCeEEEEeCCCccccee---C----C--eeccCCH-HHHhhcCCCCEEEEecC
Confidence 34579999999999999999988876 46776665554333321 1 1 1111111 11112 6899999999
Q ss_pred CcchHHHHhh-CCCCCEE-EEcCCcc
Q 015441 139 HGTTQEIIKG-LPKSLKI-VDLSADF 162 (406)
Q Consensus 139 ~~~s~~~~~~-l~~G~~V-IDlSa~f 162 (406)
+....+.+.. +++|+++ |=.+..|
T Consensus 74 ~~~~~~~~~ea~~~Gi~~iVi~t~G~ 99 (288)
T 2nu8_A 74 APFCKDSILEAIDAGIKLIITITEGI 99 (288)
T ss_dssp GGGHHHHHHHHHHTTCSEEEECCCCC
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 9988888875 4778753 4355544
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00064 Score=67.68 Aligned_cols=93 Identities=16% Similarity=0.193 Sum_probs=55.8
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCC---CceEEEEeccCcCCccccccccCccc-cCCCc-cccc-----Cccc----
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHP---YFGIKLMTADRKAGQSIGSVFPHLIS-QDLPT-MVAV-----KDAD---- 126 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp---~~elv~l~s~~~~G~~i~~v~p~l~~-~~~~~-~~~~-----~~~~---- 126 (406)
.+++||+|+| .|.||+.+++.|.+++ .++++++++++. ..+..-+|.+.. .++.. +... +.+.
T Consensus 2 ~k~i~vgIiG-~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~--~~~~~~~~gi~~~~~~~e~l~~~~~~~~did~v~e~ 78 (358)
T 1ebf_A 2 TKVVNVAVIG-AGVVGSAFLDQLLAMKSTITYNLVLLAEAER--SLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAH 78 (358)
T ss_dssp CSEEEEEEEC-CSHHHHHHHHHHHHCCCSSEEEEEEEECSSB--EEECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHH
T ss_pred CceEEEEEEe-cCHHHHHHHHHHHhcCCCCCEEEEEEEECCh--hhhccccCCCCccccHHHHHhcccCCCCCHHHHHHH
Confidence 3568999999 9999999999999876 689999987532 112111111100 00000 0000 0000
Q ss_pred ---CCCCCEEEEcCCCcch-HHHHhhCCCCCEEE
Q 015441 127 ---FSNVDAVFCCLPHGTT-QEIIKGLPKSLKIV 156 (406)
Q Consensus 127 ---~~~vDvVF~al~~~~s-~~~~~~l~~G~~VI 156 (406)
....|+|+.|+|+..- ..+.+++++|+.||
T Consensus 79 ~~~~~~~DvVV~~t~~~~~a~~~~~AL~aGkhVV 112 (358)
T 1ebf_A 79 LKTSPKPVILVDNTSSAYIAGFYTKFVENGISIA 112 (358)
T ss_dssp HTTCSSCEEEEECSCCHHHHTTHHHHHHTTCEEE
T ss_pred hhhccCCcEEEEcCCChHHHHHHHHHHHCCCeEE
Confidence 0134899999997643 33445578999988
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00079 Score=65.91 Aligned_cols=91 Identities=21% Similarity=0.324 Sum_probs=59.3
Q ss_pred ccCCccEEEEECccc-HHHHHHHHHHHcC-CCceEEEEeccCcC-CccccccccCccccCCCcccccCcccC--CCCCEE
Q 015441 59 KSEKQVRIGLLGASG-YTGAEIVRLLANH-PYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAV 133 (406)
Q Consensus 59 ~~~~~ikVaIvGATG-~vG~eLlrlL~~h-p~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvV 133 (406)
++.+++||+|+| +| .+|+..++.|... |.++++++.++... .+.+...++. ...+.++ .+.+ .++|+|
T Consensus 14 ~~~~~irvgiIG-~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~-----~~~~~~~-~~ll~~~~vD~V 86 (340)
T 1zh8_A 14 KPLRKIRLGIVG-CGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGN-----PAVFDSY-EELLESGLVDAV 86 (340)
T ss_dssp --CCCEEEEEEC-CSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSS-----CEEESCH-HHHHHSSCCSEE
T ss_pred CCCCceeEEEEe-cCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCC-----CcccCCH-HHHhcCCCCCEE
Confidence 456679999999 77 8999999999988 89999999975431 1111111110 0011111 1111 368999
Q ss_pred EEcCCCcchHHHHhh-CCCCCEEE
Q 015441 134 FCCLPHGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 134 F~al~~~~s~~~~~~-l~~G~~VI 156 (406)
+.|+|+..-.+++.+ +++|+.|+
T Consensus 87 ~i~tp~~~H~~~~~~al~aGkhVl 110 (340)
T 1zh8_A 87 DLTLPVELNLPFIEKALRKGVHVI 110 (340)
T ss_dssp EECCCGGGHHHHHHHHHHTTCEEE
T ss_pred EEeCCchHHHHHHHHHHHCCCcEE
Confidence 999998877777764 58898776
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0016 Score=62.43 Aligned_cols=72 Identities=15% Similarity=0.221 Sum_probs=39.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCc--cccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHL--ISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l--~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
++|.|.||||++|+.|++.|.+.. .+++.+..+....+.+.. +.+ ...|+.....+ ...+.++|+||.|.+.
T Consensus 14 M~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~l~~--~~~~~~~~Dl~d~~~~-~~~~~~~d~vih~a~~ 87 (342)
T 2x4g_A 14 VKYAVLGATGLLGHHAARAIRAAG-HDLVLIHRPSSQIQRLAY--LEPECRVAEMLDHAGL-ERALRGLDGVIFSAGY 87 (342)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECTTSCGGGGGG--GCCEEEECCTTCHHHH-HHHTTTCSEEEEC---
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEecChHhhhhhcc--CCeEEEEecCCCHHHH-HHHHcCCCEEEECCcc
Confidence 589999999999999999998754 577766532221111110 001 01122111111 1234689999999874
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00069 Score=64.80 Aligned_cols=95 Identities=14% Similarity=0.218 Sum_probs=51.2
Q ss_pred cCCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-cccccc-ccCc--cccCCCcccccCcccCCCCCEEEE
Q 015441 60 SEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-QSIGSV-FPHL--ISQDLPTMVAVKDADFSNVDAVFC 135 (406)
Q Consensus 60 ~~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-~~i~~v-~p~l--~~~~~~~~~~~~~~~~~~vDvVF~ 135 (406)
+.||.+|.|.||||++|+.+++.|++.. .+++.+..+.+.. +.+... .+.+ ...|+.....+ ...+.++|+||.
T Consensus 8 ~~m~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l-~~a~~~~d~vi~ 85 (318)
T 2r6j_A 8 NGMKSKILIFGGTGYIGNHMVKGSLKLG-HPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKL-VELMKKVDVVIS 85 (318)
T ss_dssp -CCCCCEEEETTTSTTHHHHHHHHHHTT-CCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHH-HHHHTTCSEEEE
T ss_pred cCCCCeEEEECCCchHHHHHHHHHHHCC-CcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHH-HHHHcCCCEEEE
Confidence 3455689999999999999999998764 5676665322111 001000 0000 01122111111 123468999999
Q ss_pred cCCCc---chHHHHhhC-CCC-C-EEE
Q 015441 136 CLPHG---TTQEIIKGL-PKS-L-KIV 156 (406)
Q Consensus 136 al~~~---~s~~~~~~l-~~G-~-~VI 156 (406)
+++.. ....+++++ ++| + ++|
T Consensus 86 ~a~~~~~~~~~~l~~aa~~~g~v~~~v 112 (318)
T 2r6j_A 86 ALAFPQILDQFKILEAIKVAGNIKRFL 112 (318)
T ss_dssp CCCGGGSTTHHHHHHHHHHHCCCCEEE
T ss_pred CCchhhhHHHHHHHHHHHhcCCCCEEE
Confidence 98742 234455544 345 4 566
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00032 Score=68.58 Aligned_cols=90 Identities=8% Similarity=-0.001 Sum_probs=54.9
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc--CCccccccccCccccCCCcccccCcccC--CCCCEEEEcC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK--AGQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCL 137 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~--~G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~al 137 (406)
||+||||+|+ |.+|+..++.| +|.++++++++++. ..+........+. .....+.++ ++.+ .++|+|+.|+
T Consensus 1 M~~rvgiiG~-G~~~~~~~~~l--~~~~~lvav~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~ll~~~~vD~V~I~t 75 (337)
T 3ip3_A 1 MSLKICVIGS-SGHFRYALEGL--DEECSITGIAPGVPEEDLSKLEKAISEMN-IKPKKYNNW-WEMLEKEKPDILVINT 75 (337)
T ss_dssp -CEEEEEECS-SSCHHHHHTTC--CTTEEEEEEECSSTTCCCHHHHHHHHTTT-CCCEECSSH-HHHHHHHCCSEEEECS
T ss_pred CceEEEEEcc-chhHHHHHHhc--CCCcEEEEEecCCchhhHHHHHHHHHHcC-CCCcccCCH-HHHhcCCCCCEEEEeC
Confidence 6799999995 55566888877 89999999998653 1222222111111 000111111 1112 3689999999
Q ss_pred CCcchHHHHhh-CCCCCEEE
Q 015441 138 PHGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 138 ~~~~s~~~~~~-l~~G~~VI 156 (406)
|+..=.+++.+ +++|+.|+
T Consensus 76 p~~~H~~~~~~al~aGkhVl 95 (337)
T 3ip3_A 76 VFSLNGKILLEALERKIHAF 95 (337)
T ss_dssp SHHHHHHHHHHHHHTTCEEE
T ss_pred CcchHHHHHHHHHHCCCcEE
Confidence 98876776654 68898876
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0017 Score=61.77 Aligned_cols=72 Identities=18% Similarity=0.266 Sum_probs=42.1
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
||++|.|.||||++|+.|++.|.+.. .+++.+... .....+..+. +...|+. ...+ ...+.++|+||.|++.
T Consensus 1 M~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~-~~~~~~~~~~--~~~~Dl~-~~~~-~~~~~~~d~Vih~a~~ 72 (311)
T 3m2p_A 1 MSLKIAVTGGTGFLGQYVVESIKNDG-NTPIILTRS-IGNKAINDYE--YRVSDYT-LEDL-INQLNDVDAVVHLAAT 72 (311)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESC-CC-----CCE--EEECCCC-HHHH-HHHTTTCSEEEECCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCC-CEEEEEeCC-CCcccCCceE--EEEcccc-HHHH-HHhhcCCCEEEEcccc
Confidence 56799999999999999999998764 477666533 1111111000 0011222 1112 2234689999998874
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00058 Score=68.47 Aligned_cols=92 Identities=14% Similarity=0.174 Sum_probs=57.0
Q ss_pred cccCCccEEEEECcccHHHHHHHHHHHcC--------CCceEEEEeccCcC-CccccccccCccccCCCcccccCcccC-
Q 015441 58 QKSEKQVRIGLLGASGYTGAEIVRLLANH--------PYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADF- 127 (406)
Q Consensus 58 ~~~~~~ikVaIvGATG~vG~eLlrlL~~h--------p~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~- 127 (406)
+++++++|||||| +|.+|+..++.|.+. +.++|++++++... .+.+..-++. . ..+.+. ++.+
T Consensus 21 ~~Ms~klrvgiIG-~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~----~-~~y~d~-~~ll~ 93 (412)
T 4gqa_A 21 QSMSARLNIGLIG-SGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGA----E-KAYGDW-RELVN 93 (412)
T ss_dssp ----CEEEEEEEC-CSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTC----S-EEESSH-HHHHH
T ss_pred ccccccceEEEEc-CcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCC----C-eEECCH-HHHhc
Confidence 3455679999999 899999988888653 35799999975431 1111111110 0 001111 1111
Q ss_pred -CCCCEEEEcCCCcchHHHHhh-CCCCCEEE
Q 015441 128 -SNVDAVFCCLPHGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 128 -~~vDvVF~al~~~~s~~~~~~-l~~G~~VI 156 (406)
.++|+|+.|+|+..=.+++.+ +++|+.|+
T Consensus 94 ~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl 124 (412)
T 4gqa_A 94 DPQVDVVDITSPNHLHYTMAMAAIAAGKHVY 124 (412)
T ss_dssp CTTCCEEEECSCGGGHHHHHHHHHHTTCEEE
T ss_pred CCCCCEEEECCCcHHHHHHHHHHHHcCCCeE
Confidence 378999999998877777754 68998876
|
| >1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0014 Score=65.82 Aligned_cols=36 Identities=25% Similarity=0.451 Sum_probs=32.0
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCC-ceEEEEeccC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPY-FGIKLMTADR 98 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~-~elv~l~s~~ 98 (406)
|+||+|+|+||-||+..++++.+||+ +++++++..+
T Consensus 4 m~rI~ILGsTGSIG~~~l~vi~~~p~~~~v~al~ag~ 40 (388)
T 1r0k_A 4 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANR 40 (388)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESS
T ss_pred ceEEEEECCCeEeHHHHHHHHHhCcCcEEEEEEEcCC
Confidence 58999999999999999999999997 9999885433
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00072 Score=67.42 Aligned_cols=87 Identities=20% Similarity=0.357 Sum_probs=58.9
Q ss_pred CccEEEEECccc-HHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccC--CCCCEEEEcC
Q 015441 62 KQVRIGLLGASG-YTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCL 137 (406)
Q Consensus 62 ~~ikVaIvGATG-~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~al 137 (406)
|++||+||| .| .+|+..++.|..+|.++++++.++... .+.+...+ .++.+.++ ++.+ .++|+|+.|+
T Consensus 1 ~~~rigiiG-~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~------g~~~~~~~-~ell~~~~vD~V~i~t 72 (387)
T 3moi_A 1 MKIRFGICG-LGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEY------GIPVFATL-AEMMQHVQMDAVYIAS 72 (387)
T ss_dssp CCEEEEEEC-CSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHH------TCCEESSH-HHHHHHSCCSEEEECS
T ss_pred CceEEEEEe-CCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHc------CCCeECCH-HHHHcCCCCCEEEEcC
Confidence 568999999 66 999999999999999999999875421 11111111 11111111 1111 3689999999
Q ss_pred CCcchHHHHhh-CCCCCEEE
Q 015441 138 PHGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 138 ~~~~s~~~~~~-l~~G~~VI 156 (406)
|+..-.+++.+ +++|+.|+
T Consensus 73 p~~~H~~~~~~al~aGk~Vl 92 (387)
T 3moi_A 73 PHQFHCEHVVQASEQGLHII 92 (387)
T ss_dssp CGGGHHHHHHHHHHTTCEEE
T ss_pred CcHHHHHHHHHHHHCCCcee
Confidence 99877777764 58898776
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0017 Score=60.04 Aligned_cols=94 Identities=15% Similarity=0.271 Sum_probs=64.9
Q ss_pred CCccEEEEECcccHHHHHHHHHHH-cCCCceEEEEeccCc---CCc-cccccccCccccCCCcc--cccCcccC--CCCC
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLA-NHPYFGIKLMTADRK---AGQ-SIGSVFPHLISQDLPTM--VAVKDADF--SNVD 131 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~-~hp~~elv~l~s~~~---~G~-~i~~v~p~l~~~~~~~~--~~~~~~~~--~~vD 131 (406)
+++.+|+|+| .|..|+.|++.+. ....++++++.++.. .|+ .+.- +++. .++ ++.. .++|
T Consensus 82 ~~~~~V~IvG-aG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~G---------vpV~~~~dL-~~~v~~~~Id 150 (212)
T 3keo_A 82 HSTTNVMLVG-CGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDG---------IPVYGISTI-NDHLIDSDIE 150 (212)
T ss_dssp TSCEEEEEEC-CSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTTC---------CBEEEGGGH-HHHC-CCSCC
T ss_pred CCCCEEEEEC-cCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeECC---------eEEeCHHHH-HHHHHHcCCC
Confidence 4457999999 5999999999753 346789999987543 344 3321 1111 111 1111 3789
Q ss_pred EEEEcCCCcchHHHHhhC-CCCCEEEEcCCcccCC
Q 015441 132 AVFCCLPHGTTQEIIKGL-PKSLKIVDLSADFRLR 165 (406)
Q Consensus 132 vVF~al~~~~s~~~~~~l-~~G~~VIDlSa~fRl~ 165 (406)
++++|+|...+++.+..+ ++|++-|-+-++.+++
T Consensus 151 ~vIIAvPs~~aq~v~d~lv~~GIk~I~nFap~~l~ 185 (212)
T 3keo_A 151 TAILTVPSTEAQEVADILVKAGIKGILSFSPVHLT 185 (212)
T ss_dssp EEEECSCGGGHHHHHHHHHHHTCCEEEECSSSCCC
T ss_pred EEEEecCchhHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999999998888888776 7899988777766664
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0013 Score=61.43 Aligned_cols=96 Identities=16% Similarity=0.181 Sum_probs=50.8
Q ss_pred EEEEECcccHHHHHHHHHHHcC-CCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc---
Q 015441 65 RIGLLGASGYTGAEIVRLLANH-PYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG--- 140 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~h-p~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~--- 140 (406)
||.|.||||++|+.|++.|.+. +..+++.+..+......+....-.+...|+.....+ ...+.++|+||.+++..
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~-~~~~~~~d~vi~~a~~~~~~ 79 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAAL-TSALQGVEKLLLISSSEVGQ 79 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHH-HHHTTTCSEEEECC------
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHH-HHHHhCCCEEEEeCCCCchH
Confidence 5899999999999999999875 567887775322211111100000001122111111 12346899999988742
Q ss_pred ---chHHHHhhC-CCCC-EEEEcCCc
Q 015441 141 ---TTQEIIKGL-PKSL-KIVDLSAD 161 (406)
Q Consensus 141 ---~s~~~~~~l-~~G~-~VIDlSa~ 161 (406)
.+..+++++ +.|+ ++|-.|+.
T Consensus 80 ~~~~~~~l~~a~~~~~~~~~v~~Ss~ 105 (286)
T 2zcu_A 80 RAPQHRNVINAAKAAGVKFIAYTSLL 105 (286)
T ss_dssp --CHHHHHHHHHHHHTCCEEEEEEET
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 233444443 3353 56656653
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0018 Score=62.52 Aligned_cols=92 Identities=12% Similarity=0.209 Sum_probs=54.0
Q ss_pred cCCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 60 SEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 60 ~~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
..+|+||+|+| .|.+|..+.+.|.... .++... +++.. +... +........... .+...++|+||.|+|.
T Consensus 18 ~~~m~~I~iIG-~G~mG~~~A~~l~~~G-~~V~~~-dr~~~--~~~~----l~~~g~~~~~~~-~~~~~~aDvvi~~vp~ 87 (310)
T 3doj_A 18 GSHMMEVGFLG-LGIMGKAMSMNLLKNG-FKVTVW-NRTLS--KCDE----LVEHGASVCESP-AEVIKKCKYTIAMLSD 87 (310)
T ss_dssp CCCSCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEE-CSSGG--GGHH----HHHTTCEECSSH-HHHHHHCSEEEECCSS
T ss_pred cccCCEEEEEC-ccHHHHHHHHHHHHCC-CeEEEE-eCCHH--HHHH----HHHCCCeEcCCH-HHHHHhCCEEEEEcCC
Confidence 34467999999 9999999999998653 355544 43321 1111 000011101111 1223578999999987
Q ss_pred cch-HHHH---h----hCCCCCEEEEcCCc
Q 015441 140 GTT-QEII---K----GLPKSLKIVDLSAD 161 (406)
Q Consensus 140 ~~s-~~~~---~----~l~~G~~VIDlSa~ 161 (406)
... .+.+ . .+..|..|||.|+.
T Consensus 88 ~~~~~~v~~~~~~l~~~l~~g~~vv~~st~ 117 (310)
T 3doj_A 88 PCAALSVVFDKGGVLEQICEGKGYIDMSTV 117 (310)
T ss_dssp HHHHHHHHHSTTCGGGGCCTTCEEEECSCC
T ss_pred HHHHHHHHhCchhhhhccCCCCEEEECCCC
Confidence 533 3333 2 24568899999874
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.003 Score=62.01 Aligned_cols=93 Identities=17% Similarity=0.385 Sum_probs=56.1
Q ss_pred ccEEEEECcccHHHHHHHHHHHcC------CCceEEEEeccCcC--Ccccc--ccccCccc-cCCCcccccCcc-cC--C
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANH------PYFGIKLMTADRKA--GQSIG--SVFPHLIS-QDLPTMVAVKDA-DF--S 128 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~h------p~~elv~l~s~~~~--G~~i~--~v~p~l~~-~~~~~~~~~~~~-~~--~ 128 (406)
++||+|+| .|.||+.++++|.++ +.++++++++++.. ...++ ........ ..++.. ..+.+ .+ .
T Consensus 4 ~irVgIiG-~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~~~-~~d~~e~l~~~ 81 (325)
T 3ing_A 4 EIRIILMG-TGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRISDR-AFSGPEDLMGE 81 (325)
T ss_dssp EEEEEEEC-CSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSCSS-BCCSGGGGTTS
T ss_pred eEEEEEEc-CcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCCcc-cCCHHHHhcCC
Confidence 58999999 999999999999875 78999999976532 11010 00000000 001100 00111 11 3
Q ss_pred CCCEEEEcCCCcch----HHHHh-hCCCCCEEEE
Q 015441 129 NVDAVFCCLPHGTT----QEIIK-GLPKSLKIVD 157 (406)
Q Consensus 129 ~vDvVF~al~~~~s----~~~~~-~l~~G~~VID 157 (406)
++|+|+.|+|+... .++.. ++++|+.||-
T Consensus 82 ~iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVt 115 (325)
T 3ing_A 82 AADLLVDCTPASRDGVREYSLYRMAFESGMNVVT 115 (325)
T ss_dssp CCSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEE
T ss_pred CCCEEEECCCCccccchHHHHHHHHHHCCCeEEE
Confidence 68999999987422 35454 5689999884
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0047 Score=59.33 Aligned_cols=78 Identities=22% Similarity=0.341 Sum_probs=54.0
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
|+.||+|+|++|.+|+.+.+.|.... .++..+ +++.. .+ . .+...++|+||+|+|...
T Consensus 20 ~~~~I~iIGg~G~mG~~la~~l~~~G-~~V~~~-~~~~~-------------~~---~----~~~~~~aDvVilavp~~~ 77 (298)
T 2pv7_A 20 DIHKIVIVGGYGKLGGLFARYLRASG-YPISIL-DREDW-------------AV---A----ESILANADVVIVSVPINL 77 (298)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTT-CCEEEE-CTTCG-------------GG---H----HHHHTTCSEEEECSCGGG
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHhCC-CeEEEE-ECCcc-------------cC---H----HHHhcCCCEEEEeCCHHH
Confidence 45689999999999999999998643 355443 32210 00 0 122357899999999888
Q ss_pred hHHHHhh----CCCCCEEEEcCCc
Q 015441 142 TQEIIKG----LPKSLKIVDLSAD 161 (406)
Q Consensus 142 s~~~~~~----l~~G~~VIDlSa~ 161 (406)
..+.++. +..++.|+|.++-
T Consensus 78 ~~~vl~~l~~~l~~~~iv~~~~sv 101 (298)
T 2pv7_A 78 TLETIERLKPYLTENMLLADLTSV 101 (298)
T ss_dssp HHHHHHHHGGGCCTTSEEEECCSC
T ss_pred HHHHHHHHHhhcCCCcEEEECCCC
Confidence 7766643 3567899998763
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0074 Score=57.16 Aligned_cols=81 Identities=17% Similarity=0.194 Sum_probs=56.8
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
.-+||+|+| +|.+|+.+++. + .+|++.+.. ..+| + + + .....++++ .+.+.|+|+.|.++..
T Consensus 11 ~~~rV~i~G-~GaIG~~v~~~---~-~leLv~v~~-~k~g----e----l-g--v~a~~d~d~-lla~pD~VVe~A~~~a 72 (253)
T 1j5p_A 11 HHMTVLIIG-MGNIGKKLVEL---G-NFEKIYAYD-RISK----D----I-P--GVVRLDEFQ-VPSDVSTVVECASPEA 72 (253)
T ss_dssp CCCEEEEEC-CSHHHHHHHHH---S-CCSEEEEEC-SSCC----C----C-S--SSEECSSCC-CCTTCCEEEECSCHHH
T ss_pred ccceEEEEC-cCHHHHHHHhc---C-CcEEEEEEe-cccc----c----c-C--ceeeCCHHH-HhhCCCEEEECCCHHH
Confidence 347999999 99999999998 5 899999887 3333 1 1 1 111222221 2257899999999887
Q ss_pred hHHHHh-hCCCCCEEEEcCC
Q 015441 142 TQEIIK-GLPKSLKIVDLSA 160 (406)
Q Consensus 142 s~~~~~-~l~~G~~VIDlSa 160 (406)
-.++.. .|++|+.||-.|.
T Consensus 73 v~e~~~~iL~aG~dvv~~S~ 92 (253)
T 1j5p_A 73 VKEYSLQILKNPVNYIIIST 92 (253)
T ss_dssp HHHHHHHHTTSSSEEEECCG
T ss_pred HHHHHHHHHHCCCCEEEcCh
Confidence 777554 5799998886664
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0022 Score=61.56 Aligned_cols=89 Identities=16% Similarity=0.208 Sum_probs=52.4
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
.|++||+|+| .|++|+.+.+.|.++. .++..+ +++.. -+.+.. ..+....+. .+... +|+||.|+|.
T Consensus 13 ~~~~~I~vIG-~G~mG~~~A~~l~~~G-~~V~~~-dr~~~~~~~~~~-------~g~~~~~~~-~~~~~-aDvvi~~vp~ 80 (296)
T 3qha_A 13 TEQLKLGYIG-LGNMGAPMATRMTEWP-GGVTVY-DIRIEAMTPLAE-------AGATLADSV-ADVAA-ADLIHITVLD 80 (296)
T ss_dssp --CCCEEEEC-CSTTHHHHHHHHTTST-TCEEEE-CSSTTTSHHHHH-------TTCEECSSH-HHHTT-SSEEEECCSS
T ss_pred cCCCeEEEEC-cCHHHHHHHHHHHHCC-CeEEEE-eCCHHHHHHHHH-------CCCEEcCCH-HHHHh-CCEEEEECCC
Confidence 3456899999 9999999999998753 455544 33221 111111 011111111 12235 9999999996
Q ss_pred cch-HHHH----hhCCCCCEEEEcCCc
Q 015441 140 GTT-QEII----KGLPKSLKIVDLSAD 161 (406)
Q Consensus 140 ~~s-~~~~----~~l~~G~~VIDlSa~ 161 (406)
... .+.+ +.+..|..|||.|..
T Consensus 81 ~~~~~~v~~~l~~~l~~g~ivv~~st~ 107 (296)
T 3qha_A 81 DAQVREVVGELAGHAKPGTVIAIHSTI 107 (296)
T ss_dssp HHHHHHHHHHHHTTCCTTCEEEECSCC
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 533 3333 334578899999875
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0014 Score=59.80 Aligned_cols=34 Identities=26% Similarity=0.267 Sum_probs=28.7
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCC-CceEEEEe
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHP-YFGIKLMT 95 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp-~~elv~l~ 95 (406)
++++|.|.||||++|+.|++.|.+.+ ..+++.+.
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~ 37 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLV 37 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEE
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEE
Confidence 35689999999999999999998775 57777765
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0053 Score=55.96 Aligned_cols=32 Identities=28% Similarity=0.476 Sum_probs=26.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCc-eEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~ 95 (406)
++|.|.||||++|+.+++.|++.... +++.+.
T Consensus 19 ~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~ 51 (242)
T 2bka_A 19 KSVFILGASGETGRVLLKEILEQGLFSKVTLIG 51 (242)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEE
T ss_pred CeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEE
Confidence 57999999999999999999876543 666664
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0027 Score=61.12 Aligned_cols=33 Identities=21% Similarity=0.454 Sum_probs=27.4
Q ss_pred ccEEEEECcccHHHHHHHHHHHcC-CCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANH-PYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~h-p~~elv~l~ 95 (406)
|++|.|.||||++|+.|++.|.+. +..+++.+.
T Consensus 4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~ 37 (348)
T 1oc2_A 4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLD 37 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEe
Confidence 468999999999999999988864 356777765
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0045 Score=60.88 Aligned_cols=33 Identities=21% Similarity=0.398 Sum_probs=27.5
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+|++|.|.||||++|+.|++.|.+.. .+++.+.
T Consensus 28 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~ 60 (379)
T 2c5a_A 28 ENLKISITGAGGFIASHIARRLKHEG-HYVIASD 60 (379)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred cCCeEEEECCccHHHHHHHHHHHHCC-CeEEEEE
Confidence 45789999999999999999998654 5777665
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0046 Score=60.12 Aligned_cols=92 Identities=18% Similarity=0.161 Sum_probs=55.1
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCC-ceEEEEeccCcCCccccccccCccccCCCcccccCcc-cCCCCCEEEEcCCCc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPY-FGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDA-DFSNVDAVFCCLPHG 140 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~-~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~-~~~~vDvVF~al~~~ 140 (406)
++||+||| .|.+|+.+.+.|..... .++..+ +++.. .+.... .+ +......... .+ ...++|+||+|+|..
T Consensus 33 ~~kI~IIG-~G~mG~slA~~l~~~G~~~~V~~~-dr~~~--~~~~a~-~~-G~~~~~~~~~-~~~~~~~aDvVilavp~~ 105 (314)
T 3ggo_A 33 MQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGY-DINPE--SISKAV-DL-GIIDEGTTSI-AKVEDFSPDFVMLSSPVR 105 (314)
T ss_dssp CSEEEEES-CSHHHHHHHHHHHHTTCCSEEEEE-CSCHH--HHHHHH-HT-TSCSEEESCT-TGGGGGCCSEEEECSCGG
T ss_pred CCEEEEEe-eCHHHHHHHHHHHhCCCCCEEEEE-ECCHH--HHHHHH-HC-CCcchhcCCH-HHHhhccCCEEEEeCCHH
Confidence 46899999 99999999999885432 255444 43321 111100 00 1000001111 22 346899999999988
Q ss_pred chHHHHh----hCCCCCEEEEcCCc
Q 015441 141 TTQEIIK----GLPKSLKIVDLSAD 161 (406)
Q Consensus 141 ~s~~~~~----~l~~G~~VIDlSa~ 161 (406)
...+.++ .+..++.|+|.++.
T Consensus 106 ~~~~vl~~l~~~l~~~~iv~d~~Sv 130 (314)
T 3ggo_A 106 TFREIAKKLSYILSEDATVTDQGSV 130 (314)
T ss_dssp GHHHHHHHHHHHSCTTCEEEECCSC
T ss_pred HHHHHHHHHhhccCCCcEEEECCCC
Confidence 7666543 35678999998875
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.00075 Score=60.98 Aligned_cols=96 Identities=15% Similarity=0.202 Sum_probs=56.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCcccccccc-CccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFP-HLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p-~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
+||+|+||+|.+|+.+++.|.++. .++..+. ++. .-+.+...+. .+...++. .... .+.+.++|+||.|++...
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g-~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~D~Vi~~~~~~~ 76 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLG-HEIVVGS-RREEKAEAKAAEYRRIAGDASIT-GMKN-EDAAEACDIAVLTIPWEH 76 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTT-CEEEEEE-SSHHHHHHHHHHHHHHHSSCCEE-EEEH-HHHHHHCSEEEECSCHHH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCC-CEEEEEe-CCHHHHHHHHHHhccccccCCCC-hhhH-HHHHhcCCEEEEeCChhh
Confidence 379999999999999999998754 4665553 321 1111111000 00000111 1111 122357899999999777
Q ss_pred hHHHHhhCC---CCCEEEEcCCccc
Q 015441 142 TQEIIKGLP---KSLKIVDLSADFR 163 (406)
Q Consensus 142 s~~~~~~l~---~G~~VIDlSa~fR 163 (406)
..+..+.+. .+..|||+++.+.
T Consensus 77 ~~~~~~~l~~~~~~~~vi~~~~g~~ 101 (212)
T 1jay_A 77 AIDTARDLKNILREKIVVSPLVPVS 101 (212)
T ss_dssp HHHHHHHTHHHHTTSEEEECCCCEE
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 666554431 4789999998664
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0029 Score=59.19 Aligned_cols=90 Identities=13% Similarity=0.090 Sum_probs=51.2
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCc--cccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHL--ISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l--~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
||+||.|.|| |++|+.|++.|.+.. .+++.+..+......+.. +.+ ...|+. +++ +.++|+||.|++.
T Consensus 4 m~~~ilVtGa-G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~--~~~~~~~~D~~---d~~---~~~~d~vi~~a~~ 73 (286)
T 3ius_A 4 MTGTLLSFGH-GYTARVLSRALAPQG-WRIIGTSRNPDQMEAIRA--SGAEPLLWPGE---EPS---LDGVTHLLISTAP 73 (286)
T ss_dssp -CCEEEEETC-CHHHHHHHHHHGGGT-CEEEEEESCGGGHHHHHH--TTEEEEESSSS---CCC---CTTCCEEEECCCC
T ss_pred CcCcEEEECC-cHHHHHHHHHHHHCC-CEEEEEEcChhhhhhHhh--CCCeEEEeccc---ccc---cCCCCEEEECCCc
Confidence 5679999998 999999999998763 577777532211111100 000 011221 121 6789999999875
Q ss_pred cch-----HHHHhhC-C--CC-CEEEEcCCc
Q 015441 140 GTT-----QEIIKGL-P--KS-LKIVDLSAD 161 (406)
Q Consensus 140 ~~s-----~~~~~~l-~--~G-~~VIDlSa~ 161 (406)
... ..++.++ + .+ .++|-.|+.
T Consensus 74 ~~~~~~~~~~l~~a~~~~~~~~~~~v~~Ss~ 104 (286)
T 3ius_A 74 DSGGDPVLAALGDQIAARAAQFRWVGYLSTT 104 (286)
T ss_dssp BTTBCHHHHHHHHHHHHTGGGCSEEEEEEEG
T ss_pred cccccHHHHHHHHHHHhhcCCceEEEEeecc
Confidence 322 3333433 2 34 467767764
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0033 Score=64.30 Aligned_cols=85 Identities=15% Similarity=0.250 Sum_probs=56.4
Q ss_pred ccEEEEECcccHHHHHHHHHHHcC---------CCceEEEEeccCcCCccccccccCccccCCCcccccCcccC--CCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANH---------PYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADF--SNVD 131 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~h---------p~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vD 131 (406)
++||+|+| +|.+|+.++++|.+| +.++++++++++.. + .....+ + .....++ .+.+ .++|
T Consensus 10 ~irIgIIG-~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~-~-~~~~~~---~--~~~~~d~-~ell~d~diD 80 (444)
T 3mtj_A 10 PIHVGLLG-LGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLD-K-AEALAG---G--LPLTTNP-FDVVDDPEID 80 (444)
T ss_dssp CEEEEEEC-CHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHH-H-HHHHHT---T--CCEESCT-HHHHTCTTCC
T ss_pred cccEEEEC-CCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHH-H-hhhhcc---c--CcccCCH-HHHhcCCCCC
Confidence 48999999 999999999988743 78999999876431 1 011000 0 0001111 1111 3689
Q ss_pred EEEEcCCC-cchHHHHh-hCCCCCEEE
Q 015441 132 AVFCCLPH-GTTQEIIK-GLPKSLKIV 156 (406)
Q Consensus 132 vVF~al~~-~~s~~~~~-~l~~G~~VI 156 (406)
+|+.|+|+ ....+++. ++++|+.|+
T Consensus 81 vVve~tp~~~~h~~~~~~AL~aGKhVv 107 (444)
T 3mtj_A 81 IVVELIGGLEPARELVMQAIANGKHVV 107 (444)
T ss_dssp EEEECCCSSTTHHHHHHHHHHTTCEEE
T ss_pred EEEEcCCCchHHHHHHHHHHHcCCEEE
Confidence 99999996 67777775 568999888
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0036 Score=57.09 Aligned_cols=31 Identities=23% Similarity=0.282 Sum_probs=26.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
++|.|.||||++|+.|++.|++.. .+++.+.
T Consensus 22 ~~ilVtGatG~iG~~l~~~L~~~G-~~V~~~~ 52 (236)
T 3e8x_A 22 MRVLVVGANGKVARYLLSELKNKG-HEPVAMV 52 (236)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred CeEEEECCCChHHHHHHHHHHhCC-CeEEEEE
Confidence 589999999999999999998764 5776665
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.40 E-value=0.002 Score=60.35 Aligned_cols=33 Identities=21% Similarity=0.329 Sum_probs=26.7
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|++||.|.||||++|+.|++.|.+.. .+++.+.
T Consensus 4 M~m~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~ 36 (287)
T 3sc6_A 4 MKERVIITGANGQLGKQLQEELNPEE-YDIYPFD 36 (287)
T ss_dssp -CEEEEEESTTSHHHHHHHHHSCTTT-EEEEEEC
T ss_pred ceeEEEEECCCCHHHHHHHHHHHhCC-CEEEEec
Confidence 44599999999999999999998763 5776664
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0039 Score=59.27 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=25.1
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEec
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA 96 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s 96 (406)
|++|.|.||||++|+.|++.|.+.. +++.+..
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g--~~v~~~~ 32 (313)
T 3ehe_A 1 MSLIVVTGGAGFIGSHVVDKLSESN--EIVVIDN 32 (313)
T ss_dssp --CEEEETTTSHHHHHHHHHHTTTS--CEEEECC
T ss_pred CCEEEEECCCchHHHHHHHHHHhCC--CEEEEEc
Confidence 4589999999999999999998765 5555543
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0058 Score=58.66 Aligned_cols=89 Identities=10% Similarity=0.066 Sum_probs=53.3
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCc-ccccCcccCCCCCEEEEcCCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPT-MVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~-~~~~~~~~~~~vDvVF~al~~ 139 (406)
+++||+|+| .|.+|..+.+.|.+.. .++... +++.. -+.+.. ..... .... .+...++|+||+|+|.
T Consensus 6 ~~~~I~iIG-~G~mG~~~a~~l~~~G-~~V~~~-dr~~~~~~~~~~-------~g~~~~~~~~-~e~~~~aDvvi~~vp~ 74 (303)
T 3g0o_A 6 TDFHVGIVG-LGSMGMGAARSCLRAG-LSTWGA-DLNPQACANLLA-------EGACGAAASA-REFAGVVDALVILVVN 74 (303)
T ss_dssp -CCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEE-CSCHHHHHHHHH-------TTCSEEESSS-TTTTTTCSEEEECCSS
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCC-CeEEEE-ECCHHHHHHHHH-------cCCccccCCH-HHHHhcCCEEEEECCC
Confidence 457999999 9999999999998653 355544 33221 011111 01111 1111 2334689999999998
Q ss_pred cch-HHHH---h----hCCCCCEEEEcCCc
Q 015441 140 GTT-QEII---K----GLPKSLKIVDLSAD 161 (406)
Q Consensus 140 ~~s-~~~~---~----~l~~G~~VIDlSa~ 161 (406)
... .+.. + .+..|..|||.|+.
T Consensus 75 ~~~~~~v~~~~~~l~~~l~~g~ivv~~st~ 104 (303)
T 3g0o_A 75 AAQVRQVLFGEDGVAHLMKPGSAVMVSSTI 104 (303)
T ss_dssp HHHHHHHHC--CCCGGGSCTTCEEEECSCC
T ss_pred HHHHHHHHhChhhHHhhCCCCCEEEecCCC
Confidence 643 3332 2 24568899999874
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0028 Score=58.63 Aligned_cols=93 Identities=17% Similarity=0.258 Sum_probs=54.1
Q ss_pred CccEEEEECcccHHHHHHHHH-HHcCCCceEEEEeccC--cCCccccccccCccccCCCcccccCcccCCCCCEEEEcCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRL-LANHPYFGIKLMTADR--KAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLP 138 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrl-L~~hp~~elv~l~s~~--~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~ 138 (406)
+..||+|+| .|.+|+.+++. +..++.++++++.++. ..|+.+..+ |-+ . ..++ ++.+.+.|+|+.|+|
T Consensus 84 ~~~rV~IIG-AG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv-~V~---~---~~dl-~eli~~~D~ViIAvP 154 (215)
T 2vt3_A 84 EMTDVILIG-VGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGV-PVY---N---LDDL-EQHVKDESVAILTVP 154 (215)
T ss_dssp ---CEEEEC-CSHHHHHHHHCC------CCEEEEEESCTTTTTCEETTE-EEE---E---GGGH-HHHCSSCCEEEECSC
T ss_pred CCCEEEEEc-cCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCC-eee---c---hhhH-HHHHHhCCEEEEecC
Confidence 346899999 89999999994 3356778999998754 344433321 100 0 1111 111222299999999
Q ss_pred CcchHHHHhhC-CCCCEEEEcCCccc
Q 015441 139 HGTTQEIIKGL-PKSLKIVDLSADFR 163 (406)
Q Consensus 139 ~~~s~~~~~~l-~~G~~VIDlSa~fR 163 (406)
+...++++..+ ++|++.|=+-.+.+
T Consensus 155 s~~~~ei~~~l~~aGi~~Ilnf~P~~ 180 (215)
T 2vt3_A 155 AVAAQSITDRLVALGIKGILNFTPAR 180 (215)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred chhHHHHHHHHHHcCCCEEEEcCcee
Confidence 98888888775 78988553334333
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0043 Score=60.84 Aligned_cols=87 Identities=17% Similarity=0.186 Sum_probs=54.9
Q ss_pred ccEEEEECcccHHHHHHHHHHH-------cCCCceEEEEeccCcCC-ccccccccCccccCCCcccccCcccC--CCCCE
Q 015441 63 QVRIGLLGASGYTGAEIVRLLA-------NHPYFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDADF--SNVDA 132 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~-------~hp~~elv~l~s~~~~G-~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDv 132 (406)
++|||||| +|++|+.-++.+. +.|.++|++++++...- +.+..-++ . . ..+.+. ++.+ .++|+
T Consensus 25 kirvgiIG-~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g---~-~-~~y~d~-~ell~~~~iDa 97 (393)
T 4fb5_A 25 PLGIGLIG-TGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFG---F-E-KATADW-RALIADPEVDV 97 (393)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHT---C-S-EEESCH-HHHHHCTTCCE
T ss_pred CccEEEEc-CCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhC---C-C-eecCCH-HHHhcCCCCcE
Confidence 38999999 8999997766553 46789999999864321 22221111 0 0 001111 1111 47899
Q ss_pred EEEcCCCcchHHHHhh-CCCCCEEE
Q 015441 133 VFCCLPHGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 133 VF~al~~~~s~~~~~~-l~~G~~VI 156 (406)
|+.|+|+..=.+++.+ +++|+.|+
T Consensus 98 V~IatP~~~H~~~a~~al~aGkhVl 122 (393)
T 4fb5_A 98 VSVTTPNQFHAEMAIAALEAGKHVW 122 (393)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEE
T ss_pred EEECCChHHHHHHHHHHHhcCCeEE
Confidence 9999998877777754 68999876
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0044 Score=58.63 Aligned_cols=61 Identities=16% Similarity=0.347 Sum_probs=39.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
|||.|.||||+||+.|++.|.+.- .+++.+. |+. +.. . +. ....+...+.++|.|+.+.+.
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G-~~V~~l~-R~~-~~~--~----~~------~~~~~~~~l~~~d~vihla~~ 61 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARG-HEVTLVS-RKP-GPG--R----IT------WDELAASGLPSCDAAVNLAGE 61 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE-SSC-CTT--E----EE------HHHHHHHCCCSCSEEEECCCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEE-CCC-CcC--e----ee------cchhhHhhccCCCEEEEeccC
Confidence 589999999999999999998643 4777775 321 110 0 00 111223345788999987753
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0096 Score=57.33 Aligned_cols=32 Identities=19% Similarity=0.414 Sum_probs=26.7
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+++|.|.||||++|+.|++.|.+.. .+++.+.
T Consensus 27 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~ 58 (343)
T 2b69_A 27 RKRILITGGAGFVGSHLTDKLMMDG-HEVTVVD 58 (343)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred CCEEEEEcCccHHHHHHHHHHHHCC-CEEEEEe
Confidence 4689999999999999999998653 5776664
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0024 Score=60.39 Aligned_cols=33 Identities=21% Similarity=0.469 Sum_probs=27.8
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+++|.|.||||++|+.+++.|.+....+++++.
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~ 37 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVT 37 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEE
Confidence 468999999999999999999876546777775
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0033 Score=60.58 Aligned_cols=90 Identities=18% Similarity=0.216 Sum_probs=57.9
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCC--CCCEEEEcCCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFS--NVDAVFCCLPH 139 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~--~vDvVF~al~~ 139 (406)
+.+||+|+||||..|+.+++.|.++ .+++++....+..|+.+. + ++.+..++ +... ++|+++.++|.
T Consensus 6 ~~~~VaVvGasG~~G~~~~~~l~~~-g~~~v~~VnP~~~g~~i~-------G--~~vy~sl~-el~~~~~~Dv~Ii~vp~ 74 (288)
T 1oi7_A 6 RETRVLVQGITGREGQFHTKQMLTY-GTKIVAGVTPGKGGMEVL-------G--VPVYDTVK-EAVAHHEVDASIIFVPA 74 (288)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTTCEET-------T--EEEESSHH-HHHHHSCCSEEEECCCH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHc-CCeEEEEECCCCCCceEC-------C--EEeeCCHH-HHhhcCCCCEEEEecCH
Confidence 4579999999999999999988876 567665544443333211 1 11111111 1112 68999999999
Q ss_pred cchHHHHhhC-CCCCE-EEEcCCcc
Q 015441 140 GTTQEIIKGL-PKSLK-IVDLSADF 162 (406)
Q Consensus 140 ~~s~~~~~~l-~~G~~-VIDlSa~f 162 (406)
....+.+..+ ++|++ +|=.+.-|
T Consensus 75 ~~~~~~~~ea~~~Gi~~vVi~t~G~ 99 (288)
T 1oi7_A 75 PAAADAALEAAHAGIPLIVLITEGI 99 (288)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSCC
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCC
Confidence 9888888764 77775 44355545
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0034 Score=59.50 Aligned_cols=89 Identities=17% Similarity=0.267 Sum_probs=52.2
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
+|+||+|+| .|.+|+.+.+.|.... .++..+ ++...-+.+.. ..+...... .+.+.++|+||+|+|...
T Consensus 2 ~~m~i~iiG-~G~~G~~~a~~l~~~g-~~V~~~-~~~~~~~~~~~-------~g~~~~~~~-~~~~~~~D~vi~~vp~~~ 70 (295)
T 1yb4_A 2 NAMKLGFIG-LGIMGSPMAINLARAG-HQLHVT-TIGPVADELLS-------LGAVNVETA-RQVTEFADIIFIMVPDTP 70 (295)
T ss_dssp --CEEEECC-CSTTHHHHHHHHHHTT-CEEEEC-CSSCCCHHHHT-------TTCBCCSSH-HHHHHTCSEEEECCSSHH
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHhCC-CEEEEE-cCHHHHHHHHH-------cCCcccCCH-HHHHhcCCEEEEECCCHH
Confidence 346999999 8999999999998653 466544 32211111111 011111111 122357899999998776
Q ss_pred h-HHHHh---h----CCCCCEEEEcCCc
Q 015441 142 T-QEIIK---G----LPKSLKIVDLSAD 161 (406)
Q Consensus 142 s-~~~~~---~----l~~G~~VIDlSa~ 161 (406)
. .+... . +..|..|||.++.
T Consensus 71 ~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 98 (295)
T 1yb4_A 71 QVEDVLFGEHGCAKTSLQGKTIVDMSSI 98 (295)
T ss_dssp HHHHHHHSTTSSTTSCCTTEEEEECSCC
T ss_pred HHHHHHhCchhHhhcCCCCCEEEECCCC
Confidence 3 44443 2 3457889998875
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0032 Score=64.36 Aligned_cols=94 Identities=18% Similarity=0.222 Sum_probs=57.9
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-ccc-ccccc-Cccc---------------cCCCccccc
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-QSI-GSVFP-HLIS---------------QDLPTMVAV 122 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-~~i-~~v~p-~l~~---------------~~~~~~~~~ 122 (406)
.+++||||+| .|.+|+.+++.+.+.|.++++++++++... +.. ...|. .+.. .......+.
T Consensus 21 ~k~IRVGIIG-aG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~ 99 (446)
T 3upl_A 21 GKPIRIGLIG-AGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDN 99 (446)
T ss_dssp TCCEEEEEEC-CSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCH
T ss_pred CCceEEEEEC-ChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCH
Confidence 4468999999 599999999999999999999999864311 000 00000 0000 000011111
Q ss_pred CcccC--CCCCEEEEcCCCc-chHHHHh-hCCCCCEEE
Q 015441 123 KDADF--SNVDAVFCCLPHG-TTQEIIK-GLPKSLKIV 156 (406)
Q Consensus 123 ~~~~~--~~vDvVF~al~~~-~s~~~~~-~l~~G~~VI 156 (406)
++.+ .++|+|+.|+|+. ...+++. ++++|+.|+
T Consensus 100 -eeLL~d~dIDaVviaTp~p~~H~e~a~~AL~AGKHVv 136 (446)
T 3upl_A 100 -DLILSNPLIDVIIDATGIPEVGAETGIAAIRNGKHLV 136 (446)
T ss_dssp -HHHHTCTTCCEEEECSCCHHHHHHHHHHHHHTTCEEE
T ss_pred -HHHhcCCCCCEEEEcCCChHHHHHHHHHHHHcCCcEE
Confidence 1112 3699999999874 3455554 568999888
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0052 Score=63.42 Aligned_cols=98 Identities=24% Similarity=0.289 Sum_probs=58.0
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccCc-CCcccccc----------ccCcc--------ccCCCcccc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRK-AGQSIGSV----------FPHLI--------SQDLPTMVA 121 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~~-~G~~i~~v----------~p~l~--------~~~~~~~~~ 121 (406)
+++||+|+| .|++|..+...|++.|.. +++.+.-+.. ...++... .|.+. ...+. . .
T Consensus 17 ~~mkIaVIG-lG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~-~-t 93 (478)
T 3g79_A 17 PIKKIGVLG-MGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFE-C-T 93 (478)
T ss_dssp SCCEEEEEC-CSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEE-E-E
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeE-E-e
Confidence 346999999 999999999999987555 7766642222 01111111 11110 00010 1 1
Q ss_pred cCcccCCCCCEEEEcCCCcc----------------hHHHHhhCCCCCEEEEcCCcc
Q 015441 122 VKDADFSNVDAVFCCLPHGT----------------TQEIIKGLPKSLKIVDLSADF 162 (406)
Q Consensus 122 ~~~~~~~~vDvVF~al~~~~----------------s~~~~~~l~~G~~VIDlSa~f 162 (406)
.+.+...++|+||.|.|... ...+.+.+..|..|||.|.-.
T Consensus 94 td~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~ 150 (478)
T 3g79_A 94 PDFSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTIT 150 (478)
T ss_dssp SCGGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCC
T ss_pred CcHHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCC
Confidence 22334568999999998753 122334466788999988653
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0026 Score=59.46 Aligned_cols=96 Identities=14% Similarity=0.182 Sum_probs=52.3
Q ss_pred EEEEECcccHHHHHHHHHHHcC-CCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 65 RIGLLGASGYTGAEIVRLLANH-PYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~h-p~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
+|.|.||||++|+.|++.|.+. +..+++.+..+......+....-.+...|+.....+ ...+.++|+||.+++....
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l-~~~~~~~d~vi~~a~~~~~~ 80 (287)
T 2jl1_A 2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESL-QKAFAGVSKLLFISGPHYDN 80 (287)
T ss_dssp CEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHH-HHHTTTCSEEEECCCCCSCH
T ss_pred eEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHH-HHHHhcCCEEEEcCCCCcCc
Confidence 6999999999999999999875 567887776322211111000000001122111111 1234689999998875321
Q ss_pred -------HHHHhhC-CCCC-EEEEcCCc
Q 015441 143 -------QEIIKGL-PKSL-KIVDLSAD 161 (406)
Q Consensus 143 -------~~~~~~l-~~G~-~VIDlSa~ 161 (406)
..+++++ +.|+ ++|-.|+.
T Consensus 81 ~~n~~~~~~l~~a~~~~~~~~~v~~Ss~ 108 (287)
T 2jl1_A 81 TLLIVQHANVVKAARDAGVKHIAYTGYA 108 (287)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEEEET
T ss_pred hHHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 2233333 3454 67766654
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0021 Score=60.75 Aligned_cols=32 Identities=28% Similarity=0.455 Sum_probs=26.3
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|++|.|.||||++|+.+++.|++.. .+++.+.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~l~ 35 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLG-HPTFLLV 35 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT-CCEEEEC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCC-CCEEEEE
Confidence 4689999999999999999998764 4666554
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0071 Score=53.84 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=27.9
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCc-eEEEEe
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYF-GIKLMT 95 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~ 95 (406)
|+++|.|.||||++|+.+++.|.+.... +++.+.
T Consensus 4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~ 38 (215)
T 2a35_A 4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPA 38 (215)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCB
T ss_pred CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEe
Confidence 4568999999999999999999987653 666554
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0036 Score=59.35 Aligned_cols=91 Identities=15% Similarity=0.101 Sum_probs=53.8
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCC-CceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHP-YFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp-~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
++||+|+| .|.+|+.+.+.|..+. ..++... +++.. -+.+.. . +.......+. .+.+.++|+||+|+|..
T Consensus 6 ~~~I~iIG-~G~mG~~~a~~l~~~g~~~~V~~~-d~~~~~~~~~~~----~-g~~~~~~~~~-~~~~~~aDvVilavp~~ 77 (290)
T 3b1f_A 6 EKTIYIAG-LGLIGASLALGIKRDHPHYKIVGY-NRSDRSRDIALE----R-GIVDEATADF-KVFAALADVIILAVPIK 77 (290)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHHCTTSEEEEE-CSSHHHHHHHHH----T-TSCSEEESCT-TTTGGGCSEEEECSCHH
T ss_pred cceEEEEe-eCHHHHHHHHHHHhCCCCcEEEEE-cCCHHHHHHHHH----c-CCcccccCCH-HHhhcCCCEEEEcCCHH
Confidence 46899999 9999999999888542 4565443 33211 011111 0 1000001111 22345789999999987
Q ss_pred chHHHHh----h-CCCCCEEEEcCCc
Q 015441 141 TTQEIIK----G-LPKSLKIVDLSAD 161 (406)
Q Consensus 141 ~s~~~~~----~-l~~G~~VIDlSa~ 161 (406)
...+.++ . +..+..|||.++.
T Consensus 78 ~~~~v~~~l~~~~l~~~~ivi~~~~~ 103 (290)
T 3b1f_A 78 KTIDFIKILADLDLKEDVIITDAGST 103 (290)
T ss_dssp HHHHHHHHHHTSCCCTTCEEECCCSC
T ss_pred HHHHHHHHHHhcCCCCCCEEEECCCC
Confidence 7655553 3 4457889998763
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0029 Score=62.14 Aligned_cols=94 Identities=14% Similarity=0.289 Sum_probs=56.3
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCC-------CceEEEEeccCcC--Ccccc--ccccCccccCCC-ccc-ccCccc--C
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHP-------YFGIKLMTADRKA--GQSIG--SVFPHLISQDLP-TMV-AVKDAD--F 127 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp-------~~elv~l~s~~~~--G~~i~--~v~p~l~~~~~~-~~~-~~~~~~--~ 127 (406)
++||+|+| +|.+|+.+++.|.+++ .++++++++++.. ...+. .....+....++ ... ..+.++ -
T Consensus 6 ~irvgIiG-~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll~ 84 (331)
T 3c8m_A 6 TINLSIFG-LGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEALA 84 (331)
T ss_dssp EEEEEEEC-CSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHHH
T ss_pred EEeEEEEe-cCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHhC
Confidence 48999999 9999999999998766 6899999875431 11010 000000000000 000 001111 1
Q ss_pred CCCCEEEEcCCCc----chHHHHh-hCCCCCEEEE
Q 015441 128 SNVDAVFCCLPHG----TTQEIIK-GLPKSLKIVD 157 (406)
Q Consensus 128 ~~vDvVF~al~~~----~s~~~~~-~l~~G~~VID 157 (406)
.++|+|+.|+|+. ...++.. ++++|+.||-
T Consensus 85 ~~iDvVv~~t~~~~~~~~~~~~~~~AL~aGkhVvt 119 (331)
T 3c8m_A 85 RDFDIVVDATPASADGKKELAFYKETFENGKDVVT 119 (331)
T ss_dssp SSCSEEEECSCCCSSSHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCEEEECCCCCCccchHHHHHHHHHHCCCeEEe
Confidence 3789999999985 4555665 5689999883
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0066 Score=58.50 Aligned_cols=33 Identities=12% Similarity=0.184 Sum_probs=27.6
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
++++|.|.||||++|+.|++.|.+.. .+++.+.
T Consensus 24 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~ 56 (351)
T 3ruf_A 24 SPKTWLITGVAGFIGSNLLEKLLKLN-QVVIGLD 56 (351)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCC-CEEEEEe
Confidence 45799999999999999999998764 5776665
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0014 Score=64.22 Aligned_cols=87 Identities=17% Similarity=0.273 Sum_probs=55.8
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCC-------ceEEEEeccCcC-CccccccccCccccCCCcccccCcccC--CCCCE
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPY-------FGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADF--SNVDA 132 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~-------~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDv 132 (406)
++|||||| +|.+|+.-++.+..+|. .+++++++++.. .+.+..-++. . ..+.+. ++.+ .++|+
T Consensus 6 klrvgiIG-~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~----~-~~~~d~-~~ll~~~~iDa 78 (390)
T 4h3v_A 6 NLGIGLIG-YAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGW----S-TTETDW-RTLLERDDVQL 78 (390)
T ss_dssp EEEEEEEC-HHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTC----S-EEESCH-HHHTTCTTCSE
T ss_pred cCcEEEEc-CCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCC----C-cccCCH-HHHhcCCCCCE
Confidence 38999999 89999998888876554 489999875431 1111111110 0 001111 1112 36899
Q ss_pred EEEcCCCcchHHHHhh-CCCCCEEE
Q 015441 133 VFCCLPHGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 133 VF~al~~~~s~~~~~~-l~~G~~VI 156 (406)
|+.|+|+..=.+++.+ +++|+.|+
T Consensus 79 V~I~tP~~~H~~~~~~al~aGkhVl 103 (390)
T 4h3v_A 79 VDVCTPGDSHAEIAIAALEAGKHVL 103 (390)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEE
T ss_pred EEEeCChHHHHHHHHHHHHcCCCce
Confidence 9999998877777754 68998876
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.00077 Score=68.54 Aligned_cols=90 Identities=12% Similarity=0.192 Sum_probs=58.3
Q ss_pred ccEEEEECc---ccHHHHHHHHHHHcC-CCceEEEEeccCcC-CccccccccCccccCCCcccccCcccC--CCCCEEEE
Q 015441 63 QVRIGLLGA---SGYTGAEIVRLLANH-PYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFC 135 (406)
Q Consensus 63 ~ikVaIvGA---TG~vG~eLlrlL~~h-p~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~ 135 (406)
++||+|||+ .|.+|+..++.|..+ |.++++++.++... .+.+...++ ......+.++ ++.+ .++|+|+.
T Consensus 20 ~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g---~~~~~~~~~~-~~ll~~~~vD~V~i 95 (438)
T 3btv_A 20 PIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLK---LSNATAFPTL-ESFASSSTIDMIVI 95 (438)
T ss_dssp CEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTT---CTTCEEESSH-HHHHHCSSCSEEEE
T ss_pred CCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcC---CCcceeeCCH-HHHhcCCCCCEEEE
Confidence 589999997 499999999999998 99999999875431 111211110 0000011111 1112 36899999
Q ss_pred cCCCcchHHHHhh-CCCC------CEEE
Q 015441 136 CLPHGTTQEIIKG-LPKS------LKIV 156 (406)
Q Consensus 136 al~~~~s~~~~~~-l~~G------~~VI 156 (406)
|+|+..-.+++.+ +++| +.|+
T Consensus 96 ~tp~~~H~~~~~~al~aG~~~~~~khVl 123 (438)
T 3btv_A 96 AIQVASHYEVVMPLLEFSKNNPNLKYLF 123 (438)
T ss_dssp CSCHHHHHHHHHHHHHHGGGCTTCCEEE
T ss_pred eCCcHHHHHHHHHHHHCCCCcccceeEE
Confidence 9998877777654 5778 7665
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0049 Score=59.87 Aligned_cols=86 Identities=13% Similarity=0.233 Sum_probs=54.7
Q ss_pred ccEEEEECcccHHHH-HHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccC--CCCCEEEEcCC
Q 015441 63 QVRIGLLGASGYTGA-EIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCLP 138 (406)
Q Consensus 63 ~ikVaIvGATG~vG~-eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~al~ 138 (406)
++|||||| +|.+|. .+++.|. ++.++++++.++... .+.+...++.. ..+.+. ++.+ .++|+|+.|+|
T Consensus 4 ~~rvgiiG-~G~~~~~~~~~~l~-~~~~~lvav~d~~~~~~~~~a~~~~~~-----~~~~~~-~~ll~~~~~D~V~i~tp 75 (336)
T 2p2s_A 4 KIRFAAIG-LAHNHIYDMCQQLI-DAGAELAGVFESDSDNRAKFTSLFPSV-----PFAASA-EQLITDASIDLIACAVI 75 (336)
T ss_dssp CCEEEEEC-CSSTHHHHHHHHHH-HTTCEEEEEECSCTTSCHHHHHHSTTC-----CBCSCH-HHHHTCTTCCEEEECSC
T ss_pred ccEEEEEC-CChHHHHHhhhhhc-CCCcEEEEEeCCCHHHHHHHHHhcCCC-----cccCCH-HHHhhCCCCCEEEEeCC
Confidence 58999999 688885 6777775 578999999975432 22222222111 111111 1112 36899999999
Q ss_pred CcchHHHHhh-CCCCCEEE
Q 015441 139 HGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 139 ~~~s~~~~~~-l~~G~~VI 156 (406)
+..-.+++.+ +++|+.|+
T Consensus 76 ~~~h~~~~~~al~aGkhVl 94 (336)
T 2p2s_A 76 PCDRAELALRTLDAGKDFF 94 (336)
T ss_dssp GGGHHHHHHHHHHTTCEEE
T ss_pred hhhHHHHHHHHHHCCCcEE
Confidence 8877777764 68898666
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0044 Score=58.69 Aligned_cols=32 Identities=22% Similarity=0.381 Sum_probs=26.6
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|++|.|.||||++|+.+++.|.+.. .+++.+.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~ 35 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLG-HPTYVLF 35 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT-CCEEEEC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCC-CcEEEEE
Confidence 4689999999999999999998754 5676664
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0057 Score=62.96 Aligned_cols=98 Identities=12% Similarity=0.134 Sum_probs=61.4
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCc---eEEEEeccCcCCcccccccc-CccccCCC--cccccCcccCCCCCEEE
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYF---GIKLMTADRKAGQSIGSVFP-HLISQDLP--TMVAVKDADFSNVDAVF 134 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~---elv~l~s~~~~G~~i~~v~p-~l~~~~~~--~~~~~~~~~~~~vDvVF 134 (406)
.-+.||.|+| .|-||+.++++|++++++ +++ +++...+++.+....+ .+....+. .+.+.-...+.+.|+|+
T Consensus 11 ~~~~rVlIIG-aGgVG~~va~lla~~~dv~~~~I~-vaD~~~~~~~~~~~~g~~~~~~~Vdadnv~~~l~aLl~~~DvVI 88 (480)
T 2ph5_A 11 LFKNRFVILG-FGCVGQALMPLIFEKFDIKPSQVT-IIAAEGTKVDVAQQYGVSFKLQQITPQNYLEVIGSTLEENDFLI 88 (480)
T ss_dssp CCCSCEEEEC-CSHHHHHHHHHHHHHBCCCGGGEE-EEESSCCSCCHHHHHTCEEEECCCCTTTHHHHTGGGCCTTCEEE
T ss_pred cCCCCEEEEC-cCHHHHHHHHHHHhCCCCceeEEE-EeccchhhhhHHhhcCCceeEEeccchhHHHHHHHHhcCCCEEE
Confidence 3346899999 999999999999988876 454 4454444433221111 11111111 01010011233459999
Q ss_pred EcCCCcchHHHHhhC-CCCCEEEEcCC
Q 015441 135 CCLPHGTTQEIIKGL-PKSLKIVDLSA 160 (406)
Q Consensus 135 ~al~~~~s~~~~~~l-~~G~~VIDlSa 160 (406)
-+++...+..+++++ ++|+.+||++.
T Consensus 89 N~s~~~~~l~Im~acleaGv~YlDTa~ 115 (480)
T 2ph5_A 89 DVSIGISSLALIILCNQKGALYINAAT 115 (480)
T ss_dssp ECCSSSCHHHHHHHHHHHTCEEEESSC
T ss_pred ECCccccCHHHHHHHHHcCCCEEECCC
Confidence 999888888888764 88999999875
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0087 Score=58.68 Aligned_cols=33 Identities=15% Similarity=0.420 Sum_probs=27.2
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+++|.|.||||++|+.|++.|.+....+++.+.
T Consensus 32 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~ 64 (377)
T 2q1s_A 32 NTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVD 64 (377)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCEEEEECCccHHHHHHHHHHHHcCCceEEEEE
Confidence 358999999999999999999876435777764
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0035 Score=60.36 Aligned_cols=36 Identities=19% Similarity=0.393 Sum_probs=27.8
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcC-CCceEEEEec
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANH-PYFGIKLMTA 96 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~h-p~~elv~l~s 96 (406)
.++++|.|.||||++|+.|++.|++. +.++++.+..
T Consensus 22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~ 58 (346)
T 4egb_A 22 SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDA 58 (346)
T ss_dssp --CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEec
Confidence 34578999999999999999988854 4567766653
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0038 Score=59.55 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=26.9
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+|++|.|.||||++|+.+++.|++.. .+++.+.
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~ 35 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFS-HPTFIYA 35 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTT-CCEEEEE
T ss_pred cccEEEEEcCCchhHHHHHHHHHhCC-CcEEEEE
Confidence 45689999999999999999998754 5676665
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.013 Score=60.51 Aligned_cols=65 Identities=11% Similarity=0.149 Sum_probs=42.2
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
++||.|.||||++|+.|++.|.+.. .+++.+..... .. .. +.. ++. ......+.++|+||.|.+.
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G-~~V~~l~R~~~-~~--~~----v~~-d~~---~~~~~~l~~~D~Vih~A~~ 211 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGG-HEVIQLVRKEP-KP--GK----RFW-DPL---NPASDLLDGADVLVHLAGE 211 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESSSC-CT--TC----EEC-CTT---SCCTTTTTTCSEEEECCCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCC-Cc--cc----eee-ccc---chhHHhcCCCCEEEECCCC
Confidence 5799999999999999999998764 47777653222 11 11 111 111 1113345789999998875
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0044 Score=58.01 Aligned_cols=91 Identities=12% Similarity=0.192 Sum_probs=56.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-ccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
+||+|+| .|.+|+.+.+.|.... .+++.+.+++..- +.+...+ .+....+. .+.+.++|+||.|+|....
T Consensus 11 m~i~iiG-~G~mG~~~a~~l~~~g-~~~v~~~~~~~~~~~~~~~~~------g~~~~~~~-~~~~~~~Dvvi~av~~~~~ 81 (266)
T 3d1l_A 11 TPIVLIG-AGNLATNLAKALYRKG-FRIVQVYSRTEESARELAQKV------EAEYTTDL-AEVNPYAKLYIVSLKDSAF 81 (266)
T ss_dssp CCEEEEC-CSHHHHHHHHHHHHHT-CCEEEEECSSHHHHHHHHHHT------TCEEESCG-GGSCSCCSEEEECCCHHHH
T ss_pred CeEEEEc-CCHHHHHHHHHHHHCC-CeEEEEEeCCHHHHHHHHHHc------CCceeCCH-HHHhcCCCEEEEecCHHHH
Confidence 5899999 6999999999988643 4555565543210 1111100 11111111 2234689999999998765
Q ss_pred HHHHhh----CCCCCEEEEcCCccc
Q 015441 143 QEIIKG----LPKSLKIVDLSADFR 163 (406)
Q Consensus 143 ~~~~~~----l~~G~~VIDlSa~fR 163 (406)
.++++. +..|..|||+++...
T Consensus 82 ~~v~~~l~~~~~~~~ivv~~s~~~~ 106 (266)
T 3d1l_A 82 AELLQGIVEGKREEALMVHTAGSIP 106 (266)
T ss_dssp HHHHHHHHTTCCTTCEEEECCTTSC
T ss_pred HHHHHHHHhhcCCCcEEEECCCCCc
Confidence 555543 346889999988654
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0027 Score=65.39 Aligned_cols=86 Identities=12% Similarity=0.195 Sum_probs=55.5
Q ss_pred ccEEEEECcc---cHHHHHHHHHHHcC-CCceEEEEeccCcC-CccccccccCccccCCCcccccCcccC--CCCCEEEE
Q 015441 63 QVRIGLLGAS---GYTGAEIVRLLANH-PYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFC 135 (406)
Q Consensus 63 ~ikVaIvGAT---G~vG~eLlrlL~~h-p~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~ 135 (406)
++||+|||+. |.+|+..++.|..+ |.+++++++++... .+.+...++ ......+.+. ++.+ .++|+|+.
T Consensus 39 ~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g---~~~~~~~~d~-~ell~~~~vD~V~I 114 (479)
T 2nvw_A 39 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQ---LKHATGFDSL-ESFAQYKDIDMIVV 114 (479)
T ss_dssp CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTT---CTTCEEESCH-HHHHHCTTCSEEEE
T ss_pred cCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcC---CCcceeeCCH-HHHhcCCCCCEEEE
Confidence 5899999973 99999999999988 89999999875431 111111110 0000011111 1112 37999999
Q ss_pred cCCCcchHHHHhh-CCCC
Q 015441 136 CLPHGTTQEIIKG-LPKS 152 (406)
Q Consensus 136 al~~~~s~~~~~~-l~~G 152 (406)
|+|+..-.+++.+ +++|
T Consensus 115 ~tp~~~H~~~~~~al~aG 132 (479)
T 2nvw_A 115 SVKVPEHYEVVKNILEHS 132 (479)
T ss_dssp CSCHHHHHHHHHHHHHHS
T ss_pred cCCcHHHHHHHHHHHHCC
Confidence 9998877777754 5778
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0042 Score=59.01 Aligned_cols=87 Identities=14% Similarity=0.273 Sum_probs=52.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc-c
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG-T 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~-~ 141 (406)
+||+|+| .|.+|..+.+.|.++. .++... +++.. -+.+.. ..+...... .+...++|+||.|+|.. .
T Consensus 2 ~~i~iIG-~G~mG~~~a~~l~~~G-~~V~~~-dr~~~~~~~~~~-------~g~~~~~~~-~~~~~~aDvvi~~vp~~~~ 70 (287)
T 3pef_A 2 QKFGFIG-LGIMGSAMAKNLVKAG-CSVTIW-NRSPEKAEELAA-------LGAERAATP-CEVVESCPVTFAMLADPAA 70 (287)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTT-CEEEEE-CSSGGGGHHHHH-------TTCEECSSH-HHHHHHCSEEEECCSSHHH
T ss_pred CEEEEEe-ecHHHHHHHHHHHHCC-CeEEEE-cCCHHHHHHHHH-------CCCeecCCH-HHHHhcCCEEEEEcCCHHH
Confidence 5899999 8999999999998654 466544 43321 111111 011101111 12235789999999954 3
Q ss_pred hHHHH-------hhCCCCCEEEEcCCc
Q 015441 142 TQEII-------KGLPKSLKIVDLSAD 161 (406)
Q Consensus 142 s~~~~-------~~l~~G~~VIDlSa~ 161 (406)
..+.. +.+..|..|||.|+.
T Consensus 71 ~~~v~~~~~~l~~~l~~~~~vi~~st~ 97 (287)
T 3pef_A 71 AEEVCFGKHGVLEGIGEGRGYVDMSTV 97 (287)
T ss_dssp HHHHHHSTTCHHHHCCTTCEEEECSCC
T ss_pred HHHHHcCcchHhhcCCCCCEEEeCCCC
Confidence 33433 335678899999874
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0057 Score=58.88 Aligned_cols=71 Identities=20% Similarity=0.165 Sum_probs=41.2
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
.++++|.|.||||++|+.|++.|++.. .+++.+. ++.....+..+ ..|+.....+ ...+.++|+||.|.+.
T Consensus 17 ~~~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~-r~~~~~~~~~~-----~~Dl~d~~~~-~~~~~~~d~vih~A~~ 87 (347)
T 4id9_A 17 RGSHMILVTGSAGRVGRAVVAALRTQG-RTVRGFD-LRPSGTGGEEV-----VGSLEDGQAL-SDAIMGVSAVLHLGAF 87 (347)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTT-CCEEEEE-SSCCSSCCSEE-----ESCTTCHHHH-HHHHTTCSEEEECCCC
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCC-CEEEEEe-CCCCCCCccEE-----ecCcCCHHHH-HHHHhCCCEEEECCcc
Confidence 345689999999999999999998764 5676664 33222122211 1122211111 1224689999998764
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.002 Score=61.27 Aligned_cols=90 Identities=16% Similarity=0.292 Sum_probs=52.1
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
|++||+|+| .|.+|+.+.+.|..+. .++. +.+++.. -+.+.. ..+...... .+.+.++|+||.|+|..
T Consensus 4 M~m~i~iiG-~G~~G~~~a~~l~~~g-~~V~-~~~~~~~~~~~~~~-------~g~~~~~~~-~~~~~~~D~vi~~v~~~ 72 (299)
T 1vpd_A 4 MTMKVGFIG-LGIMGKPMSKNLLKAG-YSLV-VSDRNPEAIADVIA-------AGAETASTA-KAIAEQCDVIITMLPNS 72 (299)
T ss_dssp --CEEEEEC-CSTTHHHHHHHHHHTT-CEEE-EECSCHHHHHHHHH-------TTCEECSSH-HHHHHHCSEEEECCSSH
T ss_pred ccceEEEEC-chHHHHHHHHHHHhCC-CEEE-EEeCCHHHHHHHHH-------CCCeecCCH-HHHHhCCCEEEEECCCH
Confidence 457999999 8999999999998654 4654 4443211 011111 011101111 12235789999999954
Q ss_pred ch-HHHH-------hhCCCCCEEEEcCCcc
Q 015441 141 TT-QEII-------KGLPKSLKIVDLSADF 162 (406)
Q Consensus 141 ~s-~~~~-------~~l~~G~~VIDlSa~f 162 (406)
.. .... +.+..|..|||.|+..
T Consensus 73 ~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~ 102 (299)
T 1vpd_A 73 PHVKEVALGENGIIEGAKPGTVLIDMSSIA 102 (299)
T ss_dssp HHHHHHHHSTTCHHHHCCTTCEEEECSCCC
T ss_pred HHHHHHHhCcchHhhcCCCCCEEEECCCCC
Confidence 43 3333 3356788999998753
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.013 Score=56.48 Aligned_cols=92 Identities=17% Similarity=0.236 Sum_probs=53.3
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
.|+.||++|| .|..|..+.+.|.++- ++++...-....-+++.. . + ....... .+...++|+||+|++..
T Consensus 3 ~Ms~kIgfIG-LG~MG~~mA~~L~~~G-~~V~v~dr~~~~~~~l~~----~-G--~~~~~s~-~e~~~~~dvvi~~l~~~ 72 (297)
T 4gbj_A 3 AMSEKIAFLG-LGNLGTPIAEILLEAG-YELVVWNRTASKAEPLTK----L-G--ATVVENA-IDAITPGGIVFSVLADD 72 (297)
T ss_dssp -CCCEEEEEC-CSTTHHHHHHHHHHTT-CEEEEC-------CTTTT----T-T--CEECSSG-GGGCCTTCEEEECCSSH
T ss_pred CCCCcEEEEe-cHHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHH----c-C--CeEeCCH-HHHHhcCCceeeeccch
Confidence 3456899999 9999999999888653 455544311111111111 0 1 1111111 22346899999999987
Q ss_pred chHH------HHhhCCCCCEEEEcCCcc
Q 015441 141 TTQE------IIKGLPKSLKIVDLSADF 162 (406)
Q Consensus 141 ~s~~------~~~~l~~G~~VIDlSa~f 162 (406)
...+ ..+.+..|..+||.|...
T Consensus 73 ~~~~~v~~~~~~~~~~~~~iiid~sT~~ 100 (297)
T 4gbj_A 73 AAVEELFSMELVEKLGKDGVHVSMSTIS 100 (297)
T ss_dssp HHHHHHSCHHHHHHHCTTCEEEECSCCC
T ss_pred hhHHHHHHHHHHhhcCCCeEEEECCCCC
Confidence 5533 223346788999998853
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.004 Score=59.12 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=27.0
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|+++|.|.||||++|+.|++.|.+.. .+++.+.
T Consensus 1 m~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~ 33 (315)
T 2ydy_A 1 MNRRVLVTGATGLLGRAVHKEFQQNN-WHAVGCG 33 (315)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHTTT-CEEEEEC
T ss_pred CCCeEEEECCCcHHHHHHHHHHHhCC-CeEEEEc
Confidence 34689999999999999999998764 5776664
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0043 Score=60.04 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=27.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEec
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA 96 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s 96 (406)
++|.|.||||++|+.|++.|++.. .+++.+..
T Consensus 11 ~~IlVtGatG~iG~~l~~~L~~~g-~~V~~l~R 42 (346)
T 3i6i_A 11 GRVLIAGATGFIGQFVATASLDAH-RPTYILAR 42 (346)
T ss_dssp CCEEEECTTSHHHHHHHHHHHHTT-CCEEEEEC
T ss_pred CeEEEECCCcHHHHHHHHHHHHCC-CCEEEEEC
Confidence 589999999999999999998765 57777653
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0052 Score=56.61 Aligned_cols=86 Identities=12% Similarity=0.205 Sum_probs=56.7
Q ss_pred CCccEEEEECcccHHHHHHHHHHH-cCCCceEEEEeccC--cCCccccccccCccccCCCcccccCcccC-CCCCEEEEc
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLA-NHPYFGIKLMTADR--KAGQSIGSVFPHLISQDLPTMVAVKDADF-SNVDAVFCC 136 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~-~hp~~elv~l~s~~--~~G~~i~~v~p~l~~~~~~~~~~~~~~~~-~~vDvVF~a 136 (406)
++..||+|+| .|.+|+.+++.+. .. .++++++.+.. ..|+.+..+ |-+ . ..++ ++.+ .++|+|+.|
T Consensus 78 ~~~~rV~IIG-aG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i~gv-~V~---~---~~dl-~ell~~~ID~ViIA 147 (211)
T 2dt5_A 78 NRKWGLCIVG-MGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPVRGG-VIE---H---VDLL-PQRVPGRIEIALLT 147 (211)
T ss_dssp TSCEEEEEEC-CSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEETTE-EEE---E---GGGH-HHHSTTTCCEEEEC
T ss_pred CCCCEEEEEC-ccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhhcCC-eee---c---HHhH-HHHHHcCCCEEEEe
Confidence 3457999999 8999999999643 34 78999998753 334433311 100 0 1111 1111 268999999
Q ss_pred CCCcchHHHHhhC-CCCCEEE
Q 015441 137 LPHGTTQEIIKGL-PKSLKIV 156 (406)
Q Consensus 137 l~~~~s~~~~~~l-~~G~~VI 156 (406)
+|+...++++..+ ++|+++|
T Consensus 148 ~Ps~~~~ei~~~l~~aGi~~I 168 (211)
T 2dt5_A 148 VPREAAQKAADLLVAAGIKGI 168 (211)
T ss_dssp SCHHHHHHHHHHHHHHTCCEE
T ss_pred CCchhHHHHHHHHHHcCCCEE
Confidence 9998777877765 6798866
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0018 Score=55.10 Aligned_cols=91 Identities=14% Similarity=0.176 Sum_probs=53.4
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-ccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
..+|+|+| +|.+|+.+++.|... ..+ +.+.++...- +.+...+ .. .......+ .+.+.++|+||.|+|...
T Consensus 21 ~~~v~iiG-~G~iG~~~a~~l~~~-g~~-v~v~~r~~~~~~~~a~~~---~~-~~~~~~~~-~~~~~~~Divi~at~~~~ 92 (144)
T 3oj0_A 21 GNKILLVG-NGMLASEIAPYFSYP-QYK-VTVAGRNIDHVRAFAEKY---EY-EYVLINDI-DSLIKNNDVIITATSSKT 92 (144)
T ss_dssp CCEEEEEC-CSHHHHHHGGGCCTT-TCE-EEEEESCHHHHHHHHHHH---TC-EEEECSCH-HHHHHTCSEEEECSCCSS
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhC-CCE-EEEEcCCHHHHHHHHHHh---CC-ceEeecCH-HHHhcCCCEEEEeCCCCC
Confidence 35899999 599999999988774 467 5555543211 1111111 00 10001111 122357999999999764
Q ss_pred hHHHHhhCCCCCEEEEcCCc
Q 015441 142 TQEIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 142 s~~~~~~l~~G~~VIDlSa~ 161 (406)
..-....+..|..|+|++-+
T Consensus 93 ~~~~~~~l~~g~~vid~~~p 112 (144)
T 3oj0_A 93 PIVEERSLMPGKLFIDLGNP 112 (144)
T ss_dssp CSBCGGGCCTTCEEEECCSS
T ss_pred cEeeHHHcCCCCEEEEccCC
Confidence 32222345678999999765
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0073 Score=56.76 Aligned_cols=29 Identities=31% Similarity=0.354 Sum_probs=25.0
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
||.|.||||++|+.|++.|. . ..+++.+.
T Consensus 2 ~ilVtGatG~iG~~l~~~L~-~-g~~V~~~~ 30 (299)
T 1n2s_A 2 NILLFGKTGQVGWELQRSLA-P-VGNLIALD 30 (299)
T ss_dssp EEEEECTTSHHHHHHHHHTT-T-TSEEEEEC
T ss_pred eEEEECCCCHHHHHHHHHhh-c-CCeEEEec
Confidence 79999999999999999998 4 56777764
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0061 Score=55.68 Aligned_cols=91 Identities=13% Similarity=0.207 Sum_probs=53.4
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
+++||+|+| +|.+|+.+++.|.... .++..+ +++.. +.... ....+. .... .+.+.++|+||+|++...
T Consensus 27 ~~~~I~iiG-~G~~G~~la~~l~~~g-~~V~~~-~r~~~--~~~~~----~~~g~~-~~~~-~~~~~~~DvVi~av~~~~ 95 (215)
T 2vns_A 27 EAPKVGILG-SGDFARSLATRLVGSG-FKVVVG-SRNPK--RTARL----FPSAAQ-VTFQ-EEAVSSPEVIFVAVFREH 95 (215)
T ss_dssp --CCEEEEC-CSHHHHHHHHHHHHTT-CCEEEE-ESSHH--HHHHH----SBTTSE-EEEH-HHHTTSCSEEEECSCGGG
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHHCC-CEEEEE-eCCHH--HHHHH----HHcCCc-eecH-HHHHhCCCEEEECCChHH
Confidence 456899999 9999999999998654 355544 33211 11111 000111 1111 223468999999999765
Q ss_pred hHHHHh--hCCCCCEEEEcCCccc
Q 015441 142 TQEIIK--GLPKSLKIVDLSADFR 163 (406)
Q Consensus 142 s~~~~~--~l~~G~~VIDlSa~fR 163 (406)
..++.. ....+..|||+++...
T Consensus 96 ~~~v~~l~~~~~~~~vv~~s~g~~ 119 (215)
T 2vns_A 96 YSSLCSLSDQLAGKILVDVSNPTE 119 (215)
T ss_dssp SGGGGGGHHHHTTCEEEECCCCCH
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcc
Confidence 444432 1126789999988653
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0068 Score=58.00 Aligned_cols=32 Identities=19% Similarity=0.444 Sum_probs=27.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
++|.|.||||++|+.|++.|.+++..+++.+.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~ 32 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLD 32 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEE
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEe
Confidence 37999999999999999999877557877775
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.007 Score=61.85 Aligned_cols=96 Identities=19% Similarity=0.278 Sum_probs=53.3
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccc-----cccCcc--------ccCCCcccccCcc-cC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGS-----VFPHLI--------SQDLPTMVAVKDA-DF 127 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~-----v~p~l~--------~~~~~~~~~~~~~-~~ 127 (406)
|++||+|+| +|++|..+...|++.- .+++.+.-+...-..+.. ..|.+. ...+. . ..+.. ..
T Consensus 1 M~mkI~VIG-~G~vG~~lA~~La~~G-~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~-~-t~d~~ea~ 76 (450)
T 3gg2_A 1 MSLDIAVVG-IGYVGLVSATCFAELG-ANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLR-F-GTEIEQAV 76 (450)
T ss_dssp -CCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEE-E-ESCHHHHG
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHhcC-CEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEE-E-ECCHHHHH
Confidence 346999999 8999999999998653 466655321110001110 011110 00010 0 11112 24
Q ss_pred CCCCEEEEcCCCcc----------hHH----HHhhCCCCCEEEEcCCc
Q 015441 128 SNVDAVFCCLPHGT----------TQE----IIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 128 ~~vDvVF~al~~~~----------s~~----~~~~l~~G~~VIDlSa~ 161 (406)
.++|+||.|+|... -.+ +.+.+..|..||+.|.-
T Consensus 77 ~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv 124 (450)
T 3gg2_A 77 PEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTV 124 (450)
T ss_dssp GGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCC
T ss_pred hcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeC
Confidence 68999999998763 222 33445678899998863
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0043 Score=60.03 Aligned_cols=92 Identities=12% Similarity=0.133 Sum_probs=54.0
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
|+||+||| .|.+|..+.+.|.+...-++. +.+++. .. .... +........... .+...++|+||+|+|...
T Consensus 24 ~~~I~iIG-~G~mG~~~A~~L~~~G~~~V~-~~dr~~~~~-~~~~----~~~~g~~~~~~~-~e~~~~aDvVi~~vp~~~ 95 (312)
T 3qsg_A 24 AMKLGFIG-FGEAASAIASGLRQAGAIDMA-AYDAASAES-WRPR----AEELGVSCKASV-AEVAGECDVIFSLVTAQA 95 (312)
T ss_dssp -CEEEEEC-CSHHHHHHHHHHHHHSCCEEE-EECSSCHHH-HHHH----HHHTTCEECSCH-HHHHHHCSEEEECSCTTT
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCCCCeEE-EEcCCCCHH-HHHH----HHHCCCEEeCCH-HHHHhcCCEEEEecCchh
Confidence 46999999 899999999999864322444 444421 11 1110 000011101111 122357899999999887
Q ss_pred hHHHHh----hCCCCCEEEEcCCcc
Q 015441 142 TQEIIK----GLPKSLKIVDLSADF 162 (406)
Q Consensus 142 s~~~~~----~l~~G~~VIDlSa~f 162 (406)
..+.+. .+..|..|||.|+..
T Consensus 96 ~~~~~~~l~~~l~~~~ivvd~st~~ 120 (312)
T 3qsg_A 96 ALEVAQQAGPHLCEGALYADFTSCS 120 (312)
T ss_dssp HHHHHHHHGGGCCTTCEEEECCCCC
T ss_pred HHHHHHhhHhhcCCCCEEEEcCCCC
Confidence 766543 345688999998753
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0041 Score=58.77 Aligned_cols=34 Identities=21% Similarity=0.252 Sum_probs=27.9
Q ss_pred CccEEEEECcccHHHHHHHHHHHcC-CCceEEEEe
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANH-PYFGIKLMT 95 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~h-p~~elv~l~ 95 (406)
|+++|.|.||||++|+.|++.|.+. +..+++.+.
T Consensus 1 M~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~ 35 (312)
T 2yy7_A 1 MNPKILIIGACGQIGTELTQKLRKLYGTENVIASD 35 (312)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEE
T ss_pred CCceEEEECCccHHHHHHHHHHHHhCCCCEEEEEc
Confidence 3468999999999999999998865 456777765
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0092 Score=56.34 Aligned_cols=33 Identities=21% Similarity=0.420 Sum_probs=27.1
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|+++|.|.||||++|+.|++.|.+.. .+++.+.
T Consensus 6 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~ 38 (321)
T 3vps_A 6 LKHRILITGGAGFIGGHLARALVASG-EEVTVLD 38 (321)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT-CCEEEEC
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCC-CEEEEEe
Confidence 45789999999999999999998764 4676664
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0064 Score=58.96 Aligned_cols=90 Identities=19% Similarity=0.304 Sum_probs=53.4
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
+++||+|+| .|.+|..+.+.|.... .++... +++.. +... +....+...... .+...++|+||.|+|...
T Consensus 30 ~~~~I~iIG-~G~mG~~~a~~l~~~G-~~V~~~-dr~~~--~~~~----l~~~g~~~~~~~-~e~~~~aDvVi~~vp~~~ 99 (320)
T 4dll_A 30 YARKITFLG-TGSMGLPMARRLCEAG-YALQVW-NRTPA--RAAS----LAALGATIHEQA-RAAARDADIVVSMLENGA 99 (320)
T ss_dssp CCSEEEEEC-CTTTHHHHHHHHHHTT-CEEEEE-CSCHH--HHHH----HHTTTCEEESSH-HHHHTTCSEEEECCSSHH
T ss_pred CCCEEEEEC-ccHHHHHHHHHHHhCC-CeEEEE-cCCHH--HHHH----HHHCCCEeeCCH-HHHHhcCCEEEEECCCHH
Confidence 456999999 8999999999998653 455444 43221 1111 000011111111 223468999999999643
Q ss_pred h-HHHH------hhCCCCCEEEEcCCc
Q 015441 142 T-QEII------KGLPKSLKIVDLSAD 161 (406)
Q Consensus 142 s-~~~~------~~l~~G~~VIDlSa~ 161 (406)
. .+.. +.+..|..|||.|..
T Consensus 100 ~~~~v~~~~~~~~~l~~~~~vi~~st~ 126 (320)
T 4dll_A 100 VVQDVLFAQGVAAAMKPGSLFLDMASI 126 (320)
T ss_dssp HHHHHHTTTCHHHHCCTTCEEEECSCC
T ss_pred HHHHHHcchhHHhhCCCCCEEEecCCC
Confidence 3 3332 235678899999875
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0041 Score=60.51 Aligned_cols=33 Identities=24% Similarity=0.417 Sum_probs=26.8
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCc------eEEEE
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYF------GIKLM 94 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~------elv~l 94 (406)
+++||+|+||+|++|+.|++.|.....+ +++.+
T Consensus 3 ~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~ 41 (327)
T 1y7t_A 3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLL 41 (327)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEE
Confidence 3469999999999999999998865543 67665
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.008 Score=58.01 Aligned_cols=85 Identities=15% Similarity=0.197 Sum_probs=54.8
Q ss_pred cEEEEECcccHHHHHH-HHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccC--CCCCEEEEcCCC
Q 015441 64 VRIGLLGASGYTGAEI-VRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCLPH 139 (406)
Q Consensus 64 ikVaIvGATG~vG~eL-lrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~al~~ 139 (406)
+||+|+| +|.+|+.+ ++.|.+ +.++++++.++... .+.+...++ . . ..+.+. ++.+ .++|+|+.|+|+
T Consensus 1 ~~vgiiG-~G~~g~~~~~~~l~~-~~~~~vav~d~~~~~~~~~~~~~g---~-~-~~~~~~-~~~l~~~~~D~V~i~tp~ 72 (332)
T 2glx_A 1 NRWGLIG-ASTIAREWVIGAIRA-TGGEVVSMMSTSAERGAAYATENG---I-G-KSVTSV-EELVGDPDVDAVYVSTTN 72 (332)
T ss_dssp CEEEEES-CCHHHHHTHHHHHHH-TTCEEEEEECSCHHHHHHHHHHTT---C-S-CCBSCH-HHHHTCTTCCEEEECSCG
T ss_pred CeEEEEc-ccHHHHHhhhHHhhc-CCCeEEEEECCCHHHHHHHHHHcC---C-C-cccCCH-HHHhcCCCCCEEEEeCCh
Confidence 5899999 69999998 888887 88999999875431 111111111 0 0 011111 1112 268999999998
Q ss_pred cchHHHHhh-CCCCCEEE
Q 015441 140 GTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 140 ~~s~~~~~~-l~~G~~VI 156 (406)
..-.+++.. +++|+.|+
T Consensus 73 ~~h~~~~~~al~~Gk~v~ 90 (332)
T 2glx_A 73 ELHREQTLAAIRAGKHVL 90 (332)
T ss_dssp GGHHHHHHHHHHTTCEEE
T ss_pred hHhHHHHHHHHHCCCeEE
Confidence 877777754 57888665
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0046 Score=62.27 Aligned_cols=92 Identities=14% Similarity=0.224 Sum_probs=55.5
Q ss_pred ccEEEEECcccH---HHHHHHHHHHcCCCceEEE-EeccCcC-CccccccccCccc-cCCCccccc-Cccc--CCCCCEE
Q 015441 63 QVRIGLLGASGY---TGAEIVRLLANHPYFGIKL-MTADRKA-GQSIGSVFPHLIS-QDLPTMVAV-KDAD--FSNVDAV 133 (406)
Q Consensus 63 ~ikVaIvGATG~---vG~eLlrlL~~hp~~elv~-l~s~~~~-G~~i~~v~p~l~~-~~~~~~~~~-~~~~--~~~vDvV 133 (406)
++|||||| +|. +|+..++.+...+.+++++ +.++... .+.+...+. +.. .....++++ +.+. -.++|+|
T Consensus 37 ~~rvgiiG-~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g-~~~~~~~~~~~~ll~~~~~~~~~vD~V 114 (417)
T 3v5n_A 37 RIRLGMVG-GGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELG-LDPSRVYSDFKEMAIREAKLKNGIEAV 114 (417)
T ss_dssp CEEEEEES-CC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHT-CCGGGBCSCHHHHHHHHHHCTTCCSEE
T ss_pred cceEEEEc-CCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcC-CCcccccCCHHHHHhcccccCCCCcEE
Confidence 58999999 776 9999999888888899997 7664321 111111110 000 000111111 0000 0258999
Q ss_pred EEcCCCcchHHHHhh-CCCCCEEE
Q 015441 134 FCCLPHGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 134 F~al~~~~s~~~~~~-l~~G~~VI 156 (406)
+.|+|+..=.+++.+ +++|+.|+
T Consensus 115 ~I~tp~~~H~~~~~~al~aGkhVl 138 (417)
T 3v5n_A 115 AIVTPNHVHYAAAKEFLKRGIHVI 138 (417)
T ss_dssp EECSCTTSHHHHHHHHHTTTCEEE
T ss_pred EECCCcHHHHHHHHHHHhCCCeEE
Confidence 999999877787765 68898776
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.019 Score=55.78 Aligned_cols=99 Identities=20% Similarity=0.277 Sum_probs=56.0
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-Cccccccc--cCccccCCCcccccCcccCCCCCEEEEcC
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVF--PHLISQDLPTMVAVKDADFSNVDAVFCCL 137 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~--p~l~~~~~~~~~~~~~~~~~~vDvVF~al 137 (406)
+|.+||+|+| .|.+|..+...|.+.- .++..+ +++.. -+.+.... +.+.+..+......+..+..++|+||+|+
T Consensus 12 ~~~~kI~iIG-~G~mG~ala~~L~~~G-~~V~~~-~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~aDvVil~v 88 (335)
T 1z82_A 12 HMEMRFFVLG-AGSWGTVFAQMLHENG-EEVILW-ARRKEIVDLINVSHTSPYVEESKITVRATNDLEEIKKEDILVIAI 88 (335)
T ss_dssp --CCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEE-CSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGGCCTTEEEEECS
T ss_pred ccCCcEEEEC-cCHHHHHHHHHHHhCC-CeEEEE-eCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHHhcCCCEEEEEC
Confidence 5668999999 9999999999887532 355444 33211 01111100 00011000000011222256899999999
Q ss_pred CCcchHHHHhhCC-CCCEEEEcCCcc
Q 015441 138 PHGTTQEIIKGLP-KSLKIVDLSADF 162 (406)
Q Consensus 138 ~~~~s~~~~~~l~-~G~~VIDlSa~f 162 (406)
+.....+.++.+. .+..|||++.-.
T Consensus 89 k~~~~~~v~~~l~~~~~~vv~~~nGi 114 (335)
T 1z82_A 89 PVQYIREHLLRLPVKPSMVLNLSKGI 114 (335)
T ss_dssp CGGGHHHHHTTCSSCCSEEEECCCCC
T ss_pred CHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 9876677766654 678899998544
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.024 Score=53.49 Aligned_cols=31 Identities=23% Similarity=0.531 Sum_probs=25.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+||.|.||||++|+.|++.|.++. .+++.+.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~ 31 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELG-YEVVVVD 31 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEC
T ss_pred CEEEEECCCChHHHHHHHHHHhCC-CEEEEEe
Confidence 479999999999999999998764 4666664
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0039 Score=64.11 Aligned_cols=94 Identities=19% Similarity=0.282 Sum_probs=55.7
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCcc--ccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLI--SQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~--~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
+.||+|+|| |.+|+.+++.|.+++..+++.+ +++.. .+.+... .... ..++.....+ .+.+.++|+|+.|+|.
T Consensus 23 ~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~-~R~~~ka~~la~~-~~~~~~~~D~~d~~~l-~~~l~~~DvVIn~tp~ 98 (467)
T 2axq_A 23 GKNVLLLGS-GFVAQPVIDTLAANDDINVTVA-CRTLANAQALAKP-SGSKAISLDVTDDSAL-DKVLADNDVVISLIPY 98 (467)
T ss_dssp CEEEEEECC-STTHHHHHHHHHTSTTEEEEEE-ESSHHHHHHHHGG-GTCEEEECCTTCHHHH-HHHHHTSSEEEECSCG
T ss_pred CCEEEEECC-hHHHHHHHHHHHhCCCCeEEEE-ECCHHHHHHHHHh-cCCcEEEEecCCHHHH-HHHHcCCCEEEECCch
Confidence 468999997 9999999999998877775444 44321 1111110 0010 0011111111 1123579999999998
Q ss_pred cchHHHHhh-CCCCCEEEEcCC
Q 015441 140 GTTQEIIKG-LPKSLKIVDLSA 160 (406)
Q Consensus 140 ~~s~~~~~~-l~~G~~VIDlSa 160 (406)
.....+... +++|..++|.+.
T Consensus 99 ~~~~~v~~a~l~~g~~vvd~~~ 120 (467)
T 2axq_A 99 TFHPNVVKSAIRTKTDVVTSSY 120 (467)
T ss_dssp GGHHHHHHHHHHHTCEEEECSC
T ss_pred hhhHHHHHHHHhcCCEEEEeec
Confidence 765555543 467888998753
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0027 Score=62.83 Aligned_cols=90 Identities=10% Similarity=0.173 Sum_probs=54.8
Q ss_pred CCccEEEEECcccHHHHH-HH----HHHHcCCCceEE---------EEeccCcC-CccccccccCccccCCCcccccCcc
Q 015441 61 EKQVRIGLLGASGYTGAE-IV----RLLANHPYFGIK---------LMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDA 125 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~e-Ll----rlL~~hp~~elv---------~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~ 125 (406)
.+++||+|+|++|.+|+. .+ +.+.+.+.++++ ++.++... .+.+...++ . . ..+.++ ++
T Consensus 4 ~~~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~---~-~-~~~~~~-~~ 77 (383)
T 3oqb_A 4 TQRLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFN---I-A-RWTTDL-DA 77 (383)
T ss_dssp CEEEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTT---C-C-CEESCH-HH
T ss_pred CceeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhC---C-C-cccCCH-HH
Confidence 446899999999999997 66 777766655433 56654321 111211111 0 0 011111 11
Q ss_pred cC--CCCCEEEEcCCCcchHHHHhh-CCCCCEEE
Q 015441 126 DF--SNVDAVFCCLPHGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 126 ~~--~~vDvVF~al~~~~s~~~~~~-l~~G~~VI 156 (406)
.+ .++|+|+.|+|+..-.+++.+ +++|+.|+
T Consensus 78 ll~~~~iD~V~i~tp~~~h~~~~~~al~~Gk~V~ 111 (383)
T 3oqb_A 78 ALADKNDTMFFDAATTQARPGLLTQAINAGKHVY 111 (383)
T ss_dssp HHHCSSCCEEEECSCSSSSHHHHHHHHTTTCEEE
T ss_pred HhcCCCCCEEEECCCchHHHHHHHHHHHCCCeEE
Confidence 11 368999999998877787764 68999877
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0053 Score=57.95 Aligned_cols=32 Identities=22% Similarity=0.226 Sum_probs=26.0
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|++|.|.||||++|+.+++.|.+.. .+++.+.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~ 33 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAG-NPTYALV 33 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHT-CCEEEEE
T ss_pred CcEEEEECCCchHHHHHHHHHHhCC-CcEEEEE
Confidence 4689999999999999999988653 4666654
|
| >3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.026 Score=47.30 Aligned_cols=92 Identities=12% Similarity=0.242 Sum_probs=56.5
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc--CCccccccccCccccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK--AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~--~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
++.++.|+| +|..|+++++.|.+++.++++++.+... .|+.+.. .|-+ + ...+... . .-.++|.||+|.|.
T Consensus 3 ~~~~vlIiG-aG~~g~~l~~~l~~~~g~~vvg~~d~~~~~~g~~i~g-~pV~-g--~~~l~~~-~-~~~~id~viia~~~ 75 (141)
T 3nkl_A 3 AKKKVLIYG-AGSAGLQLANMLRQGKEFHPIAFIDDDRKKHKTTMQG-ITIY-R--PKYLERL-I-KKHCISTVLLAVPS 75 (141)
T ss_dssp CCEEEEEEC-CSHHHHHHHHHHHHSSSEEEEEEECSCGGGTTCEETT-EEEE-C--GGGHHHH-H-HHHTCCEEEECCTT
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCCcEEEEEEECCcccCCCEecC-eEEE-C--HHHHHHH-H-HHCCCCEEEEeCCC
Confidence 346899999 7888999999998888899999987543 2322210 1111 0 0001000 0 00268999999986
Q ss_pred cch---HHHHhhC-CCCCEEEEcCC
Q 015441 140 GTT---QEIIKGL-PKSLKIVDLSA 160 (406)
Q Consensus 140 ~~s---~~~~~~l-~~G~~VIDlSa 160 (406)
... .++...+ ..|+.|..+..
T Consensus 76 ~~~~~~~~i~~~l~~~gv~v~~vP~ 100 (141)
T 3nkl_A 76 ASQVQKKVIIESLAKLHVEVLTIPN 100 (141)
T ss_dssp SCHHHHHHHHHHHHTTTCEEEECCC
T ss_pred CCHHHHHHHHHHHHHcCCeEEECCC
Confidence 544 4455555 57888775544
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0083 Score=61.12 Aligned_cols=97 Identities=13% Similarity=0.200 Sum_probs=54.0
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccc-----cccCccc---cCCCccc-ccC-cccCCCC
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGS-----VFPHLIS---QDLPTMV-AVK-DADFSNV 130 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~-----v~p~l~~---~~~~~~~-~~~-~~~~~~v 130 (406)
.+++||+|+| +|++|..+...|++ ..+++.+.-....-..+.. ..|.+.. .....+. ..+ .+...++
T Consensus 34 ~~~mkIaVIG-lG~mG~~lA~~La~--G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~~a 110 (432)
T 3pid_A 34 SEFMKITISG-TGYVGLSNGVLIAQ--NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYRNA 110 (432)
T ss_dssp -CCCEEEEEC-CSHHHHHHHHHHHT--TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHTTC
T ss_pred cCCCEEEEEC-cCHHHHHHHHHHHc--CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHhCC
Confidence 3356999999 89999999999886 4677665321110000100 0011100 0000011 112 1235689
Q ss_pred CEEEEcCCCcch---------------HHHHhhCCCCCEEEEcCCc
Q 015441 131 DAVFCCLPHGTT---------------QEIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 131 DvVF~al~~~~s---------------~~~~~~l~~G~~VIDlSa~ 161 (406)
|+||.|+|.... ..+.+ +..|..|||.|.-
T Consensus 111 DvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv 155 (432)
T 3pid_A 111 DYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTI 155 (432)
T ss_dssp SEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCC
T ss_pred CEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCC
Confidence 999999998631 22334 6678899998864
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.022 Score=51.74 Aligned_cols=71 Identities=14% Similarity=0.223 Sum_probs=49.7
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
++||+|+| +|.+|..+.+.|.+.- .++..+ +++.. ...++|+||+|++....
T Consensus 19 ~~~I~iiG-~G~mG~~la~~l~~~g-~~V~~~-~~~~~-------------------------~~~~aD~vi~av~~~~~ 70 (209)
T 2raf_A 19 GMEITIFG-KGNMGQAIGHNFEIAG-HEVTYY-GSKDQ-------------------------ATTLGEIVIMAVPYPAL 70 (209)
T ss_dssp -CEEEEEC-CSHHHHHHHHHHHHTT-CEEEEE-CTTCC-------------------------CSSCCSEEEECSCHHHH
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCC-CEEEEE-cCCHH-------------------------HhccCCEEEEcCCcHHH
Confidence 35899999 8999999999998643 355443 32210 23468999999996655
Q ss_pred HHHHhhC----CCCCEEEEcCCcc
Q 015441 143 QEIIKGL----PKSLKIVDLSADF 162 (406)
Q Consensus 143 ~~~~~~l----~~G~~VIDlSa~f 162 (406)
.+.++.+ . +..|||.++.+
T Consensus 71 ~~v~~~l~~~~~-~~~vi~~~~g~ 93 (209)
T 2raf_A 71 AALAKQYATQLK-GKIVVDITNPL 93 (209)
T ss_dssp HHHHHHTHHHHT-TSEEEECCCCB
T ss_pred HHHHHHHHHhcC-CCEEEEECCCC
Confidence 5555433 4 88999998855
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.67 E-value=0.013 Score=55.09 Aligned_cols=92 Identities=18% Similarity=0.129 Sum_probs=53.6
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCC-CceEEEEeccCcCCccccccccCccccCCCcccccCcccCC-CCCEEEEcCCCc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHP-YFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFS-NVDAVFCCLPHG 140 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp-~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~-~vDvVF~al~~~ 140 (406)
|+||+|+| .|.+|+.+.+.|.... ..++..+ +++.. +..... .+ +.......+. .+.+. ++|+||+|+|..
T Consensus 1 m~~I~iIG-~G~mG~~~a~~l~~~g~~~~V~~~-d~~~~--~~~~~~-~~-g~~~~~~~~~-~~~~~~~aDvVilavp~~ 73 (281)
T 2g5c_A 1 MQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGY-DINPE--SISKAV-DL-GIIDEGTTSI-AKVEDFSPDFVMLSSPVR 73 (281)
T ss_dssp CCEEEEES-CSHHHHHHHHHHHHTTCCSEEEEE-CSCHH--HHHHHH-HT-TSCSEEESCG-GGGGGTCCSEEEECSCHH
T ss_pred CcEEEEEe-cCHHHHHHHHHHHhcCCCcEEEEE-eCCHH--HHHHHH-HC-CCcccccCCH-HHHhcCCCCEEEEcCCHH
Confidence 35899999 9999999999998543 2355443 33211 111100 00 1000001111 22346 899999999987
Q ss_pred chHHHHh----hCCCCCEEEEcCCc
Q 015441 141 TTQEIIK----GLPKSLKIVDLSAD 161 (406)
Q Consensus 141 ~s~~~~~----~l~~G~~VIDlSa~ 161 (406)
...+.+. .+..+..|+|.++.
T Consensus 74 ~~~~v~~~l~~~l~~~~iv~~~~~~ 98 (281)
T 2g5c_A 74 TFREIAKKLSYILSEDATVTDQGSV 98 (281)
T ss_dssp HHHHHHHHHHHHSCTTCEEEECCSC
T ss_pred HHHHHHHHHHhhCCCCcEEEECCCC
Confidence 6655543 34567889998764
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0043 Score=58.99 Aligned_cols=88 Identities=16% Similarity=0.231 Sum_probs=51.9
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc-
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG- 140 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~- 140 (406)
|+||+|+| .|.+|..+.+.|.... .++... +++.. -+.+.. ......... .+...++|+||.|+|..
T Consensus 1 M~~I~iiG-~G~mG~~~a~~l~~~G-~~V~~~-dr~~~~~~~~~~-------~g~~~~~~~-~~~~~~advvi~~v~~~~ 69 (287)
T 3pdu_A 1 MTTYGFLG-LGIMGGPMAANLVRAG-FDVTVW-NRNPAKCAPLVA-------LGARQASSP-AEVCAACDITIAMLADPA 69 (287)
T ss_dssp CCCEEEEC-CSTTHHHHHHHHHHHT-CCEEEE-CSSGGGGHHHHH-------HTCEECSCH-HHHHHHCSEEEECCSSHH
T ss_pred CCeEEEEc-cCHHHHHHHHHHHHCC-CeEEEE-cCCHHHHHHHHH-------CCCeecCCH-HHHHHcCCEEEEEcCCHH
Confidence 46899999 9999999999988542 355444 33221 111111 011101111 12235789999999976
Q ss_pred chHHHH---h----hCCCCCEEEEcCCc
Q 015441 141 TTQEII---K----GLPKSLKIVDLSAD 161 (406)
Q Consensus 141 ~s~~~~---~----~l~~G~~VIDlSa~ 161 (406)
...+.+ . .+..|..|||.|..
T Consensus 70 ~~~~v~~~~~~l~~~l~~g~~vv~~st~ 97 (287)
T 3pdu_A 70 AAREVCFGANGVLEGIGGGRGYIDMSTV 97 (287)
T ss_dssp HHHHHHHSTTCGGGTCCTTCEEEECSCC
T ss_pred HHHHHHcCchhhhhcccCCCEEEECCCC
Confidence 334444 2 23568899999874
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0095 Score=57.51 Aligned_cols=91 Identities=14% Similarity=0.195 Sum_probs=58.2
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCC--CCCEEEEcCCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFS--NVDAVFCCLPH 139 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~--~vDvVF~al~~ 139 (406)
...+|+|+||||..|+.+++.|.++ .+++++-......|+.+. + ++.+..+ .+... ++|+++.|+|+
T Consensus 12 ~~~~v~V~Gasg~~G~~~~~~l~~~-g~~~V~~VnP~~~g~~i~-------G--~~vy~sl-~el~~~~~~Dv~ii~vp~ 80 (294)
T 2yv1_A 12 ENTKAIVQGITGRQGSFHTKKMLEC-GTKIVGGVTPGKGGQNVH-------G--VPVFDTV-KEAVKETDANASVIFVPA 80 (294)
T ss_dssp TTCCEEEETTTSHHHHHHHHHHHHT-TCCEEEEECTTCTTCEET-------T--EEEESSH-HHHHHHHCCCEEEECCCH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHhC-CCeEEEEeCCCCCCceEC-------C--EeeeCCH-HHHhhcCCCCEEEEccCH
Confidence 3468999999999999999998876 455554444433333221 1 1112111 11112 68999999999
Q ss_pred cchHHHHhhC-CCCCE-EEEcCCccc
Q 015441 140 GTTQEIIKGL-PKSLK-IVDLSADFR 163 (406)
Q Consensus 140 ~~s~~~~~~l-~~G~~-VIDlSa~fR 163 (406)
....+.+..+ ++|++ +|=.+.-|.
T Consensus 81 ~~~~~~v~ea~~~Gi~~vVi~t~G~~ 106 (294)
T 2yv1_A 81 PFAKDAVFEAIDAGIELIVVITEHIP 106 (294)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSCCC
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 9888888754 77876 454565553
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0061 Score=56.64 Aligned_cols=33 Identities=24% Similarity=0.293 Sum_probs=26.9
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
||.+|.|.||||++|+.|++.|.+.. .+++.+.
T Consensus 1 M~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~ 33 (267)
T 3ay3_A 1 MLNRLLVTGAAGGVGSAIRPHLGTLA-HEVRLSD 33 (267)
T ss_dssp CEEEEEEESTTSHHHHHHGGGGGGTE-EEEEECC
T ss_pred CCceEEEECCCCHHHHHHHHHHHhCC-CEEEEEe
Confidence 45689999999999999999998764 5665554
|
| >3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.006 Score=60.66 Aligned_cols=93 Identities=10% Similarity=0.095 Sum_probs=56.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCc---cccccccCccc-cCCCccc-ccC---------cc--cC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQ---SIGSVFPHLIS-QDLPTMV-AVK---------DA--DF 127 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~---~i~~v~p~l~~-~~~~~~~-~~~---------~~--~~ 127 (406)
.||+|+|+||-||+.-++.+.+|+.+++++++..+...+ ...+..|.+.. .+-.... .+. .+ ..
T Consensus 4 k~i~ILGsTGSIG~~tldVi~~~~~~~vvaL~a~~n~~~l~~q~~~f~p~~v~v~~~~~~~~~l~~~~~G~~~l~el~~~ 83 (376)
T 3a06_A 4 RTLVILGATGSIGTQTLDVLKKVKGIRLIGISFHSNLELAFKIVKEFNVKNVAITGDVEFEDSSINVWKGSHSIEEMLEA 83 (376)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSCSEEEEEEEESSCHHHHHHHHHHHTCCEEEECSSCCCCCSSSEEEESTTHHHHHHHH
T ss_pred ceEEEECCCCHHHHHHHHHHHhCCCeEEEEEEccCCHHHHHHHHHHcCCCEEEEccHHHHHHHHHHHccCHHHHHHHhcC
Confidence 689999999999999999999888899999965443321 11111222110 0000000 000 01 11
Q ss_pred CCCCEEEEcCCCcchHHHH-hhCCCCCEEE
Q 015441 128 SNVDAVFCCLPHGTTQEII-KGLPKSLKIV 156 (406)
Q Consensus 128 ~~vDvVF~al~~~~s~~~~-~~l~~G~~VI 156 (406)
.++|+|..|++.....+-. .++++|..|.
T Consensus 84 ~~~D~Vv~AivG~aGL~ptlaAi~aGK~va 113 (376)
T 3a06_A 84 LKPDITMVAVSGFSGLRAVLASLEHSKRVC 113 (376)
T ss_dssp HCCSEEEECCCSTTHHHHHHHHHHHCSEEE
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHHCCCEEE
Confidence 3689999999866554433 3457788876
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0036 Score=62.55 Aligned_cols=93 Identities=19% Similarity=0.249 Sum_probs=56.8
Q ss_pred CccEEEEECcccH---HHHHHHHHHHcCCCceEEE-EeccCcC-CccccccccCccc-cCCCccccc-Cccc--CCCCCE
Q 015441 62 KQVRIGLLGASGY---TGAEIVRLLANHPYFGIKL-MTADRKA-GQSIGSVFPHLIS-QDLPTMVAV-KDAD--FSNVDA 132 (406)
Q Consensus 62 ~~ikVaIvGATG~---vG~eLlrlL~~hp~~elv~-l~s~~~~-G~~i~~v~p~l~~-~~~~~~~~~-~~~~--~~~vDv 132 (406)
+++|||||| +|. +|+..++.+...+.+++++ +.++... .+.+...+. +.. .-...++++ +.+. -.++|+
T Consensus 11 ~~~rvgiiG-~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g-~~~~~~~~~~~~ll~~~~~~~~~vD~ 88 (398)
T 3dty_A 11 QPIRWAMVG-GGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLG-VDSERCYADYLSMFEQEARRADGIQA 88 (398)
T ss_dssp SCEEEEEEE-CCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTT-CCGGGBCSSHHHHHHHHTTCTTCCSE
T ss_pred CcceEEEEc-CCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhC-CCcceeeCCHHHHHhcccccCCCCCE
Confidence 358999999 887 9999999888888899998 6654321 111111110 000 000111111 0000 025899
Q ss_pred EEEcCCCcchHHHHhh-CCCCCEEE
Q 015441 133 VFCCLPHGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 133 VF~al~~~~s~~~~~~-l~~G~~VI 156 (406)
|+.|+|+..=.+++.+ +++|+.|+
T Consensus 89 V~i~tp~~~H~~~~~~al~aGkhVl 113 (398)
T 3dty_A 89 VSIATPNGTHYSITKAALEAGLHVV 113 (398)
T ss_dssp EEEESCGGGHHHHHHHHHHTTCEEE
T ss_pred EEECCCcHHHHHHHHHHHHCCCeEE
Confidence 9999999877777764 58898876
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0089 Score=59.31 Aligned_cols=90 Identities=16% Similarity=0.283 Sum_probs=53.3
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCC---CEEEEcCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNV---DAVFCCLPH 139 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~v---DvVF~al~~ 139 (406)
++||+||| .|.+|..+.+.|.++. .++..+ +++.. ++.. +..........+ .+...++ |+||+|+|.
T Consensus 22 ~mkIgiIG-lG~mG~~~A~~L~~~G-~~V~v~-dr~~~--~~~~----l~~~g~~~~~s~-~e~~~~a~~~DvVi~~vp~ 91 (358)
T 4e21_A 22 SMQIGMIG-LGRMGADMVRRLRKGG-HECVVY-DLNVN--AVQA----LEREGIAGARSI-EEFCAKLVKPRVVWLMVPA 91 (358)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEE-CSCHH--HHHH----HHTTTCBCCSSH-HHHHHHSCSSCEEEECSCG
T ss_pred CCEEEEEC-chHHHHHHHHHHHhCC-CEEEEE-eCCHH--HHHH----HHHCCCEEeCCH-HHHHhcCCCCCEEEEeCCH
Confidence 36999999 9999999999998764 455444 43221 1111 000011101111 1112344 999999998
Q ss_pred cchHHHHh----hCCCCCEEEEcCCcc
Q 015441 140 GTTQEIIK----GLPKSLKIVDLSADF 162 (406)
Q Consensus 140 ~~s~~~~~----~l~~G~~VIDlSa~f 162 (406)
....+.+. .+..|..|||.|+..
T Consensus 92 ~~v~~vl~~l~~~l~~g~iiId~st~~ 118 (358)
T 4e21_A 92 AVVDSMLQRMTPLLAANDIVIDGGNSH 118 (358)
T ss_dssp GGHHHHHHHHGGGCCTTCEEEECSSCC
T ss_pred HHHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 85444443 345789999998764
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.016 Score=55.04 Aligned_cols=30 Identities=23% Similarity=0.259 Sum_probs=24.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l 94 (406)
++|.|.||||++|+.|++.|.+.. .+++.+
T Consensus 4 ~~ilVtGatG~iG~~l~~~L~~~g-~~v~~~ 33 (321)
T 1e6u_A 4 QRVFIAGHRGMVGSAIRRQLEQRG-DVELVL 33 (321)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCT-TEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCC-CeEEEE
Confidence 589999999999999999998753 455554
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.019 Score=56.17 Aligned_cols=85 Identities=12% Similarity=0.183 Sum_probs=51.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc-h
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT-T 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~-s 142 (406)
.+|+|+| .|.+|+.+.+.|..+ .+++.... ++. +.... +.. .. ...++ ++.+.++|+|++++|... +
T Consensus 141 ~tvGIIG-lG~IG~~vA~~l~~~-G~~V~~~d-r~~--~~~~~----~~~-~~-~~~~l-~ell~~aDvV~l~lPlt~~T 208 (324)
T 3hg7_A 141 RTLLILG-TGSIGQHIAHTGKHF-GMKVLGVS-RSG--RERAG----FDQ-VY-QLPAL-NKMLAQADVIVSVLPATRET 208 (324)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEC-SSC--CCCTT----CSE-EE-CGGGH-HHHHHTCSEEEECCCCCSSS
T ss_pred ceEEEEE-ECHHHHHHHHHHHhC-CCEEEEEc-CCh--HHhhh----hhc-cc-ccCCH-HHHHhhCCEEEEeCCCCHHH
Confidence 5899999 999999999999876 46766553 221 11110 000 00 01112 223468999999999543 3
Q ss_pred HHHH-----hhCCCCCEEEEcCC
Q 015441 143 QEII-----KGLPKSLKIVDLSA 160 (406)
Q Consensus 143 ~~~~-----~~l~~G~~VIDlSa 160 (406)
..+. ..++.|..+||.|-
T Consensus 209 ~~li~~~~l~~mk~gailIN~aR 231 (324)
T 3hg7_A 209 HHLFTASRFEHCKPGAILFNVGR 231 (324)
T ss_dssp TTSBCTTTTTCSCTTCEEEECSC
T ss_pred HHHhHHHHHhcCCCCcEEEECCC
Confidence 3322 33456899998774
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0048 Score=58.65 Aligned_cols=91 Identities=20% Similarity=0.288 Sum_probs=52.3
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
+++||+|+| .|.+|+.+.+.|.... .++. +.+++.. +.... ....+...... .+.+.++|+||.|+|...
T Consensus 3 ~~~~i~iiG-~G~~G~~~a~~l~~~g-~~V~-~~~~~~~--~~~~~----~~~g~~~~~~~-~~~~~~~D~vi~~vp~~~ 72 (301)
T 3cky_A 3 KSIKIGFIG-LGAMGKPMAINLLKEG-VTVY-AFDLMEA--NVAAV----VAQGAQACENN-QKVAAASDIIFTSLPNAG 72 (301)
T ss_dssp -CCEEEEEC-CCTTHHHHHHHHHHTT-CEEE-EECSSHH--HHHHH----HTTTCEECSSH-HHHHHHCSEEEECCSSHH
T ss_pred CCCEEEEEC-ccHHHHHHHHHHHHCC-CeEE-EEeCCHH--HHHHH----HHCCCeecCCH-HHHHhCCCEEEEECCCHH
Confidence 457999999 8999999999988653 4654 4443211 11110 00011101111 122346899999998654
Q ss_pred h-HHHH-------hhCCCCCEEEEcCCcc
Q 015441 142 T-QEII-------KGLPKSLKIVDLSADF 162 (406)
Q Consensus 142 s-~~~~-------~~l~~G~~VIDlSa~f 162 (406)
. .+.. +.+..|..|||+++-.
T Consensus 73 ~~~~v~~~~~~l~~~l~~~~~vv~~~~~~ 101 (301)
T 3cky_A 73 IVETVMNGPGGVLSACKAGTVIVDMSSVS 101 (301)
T ss_dssp HHHHHHHSTTCHHHHSCTTCEEEECCCCC
T ss_pred HHHHHHcCcchHhhcCCCCCEEEECCCCC
Confidence 3 3333 2356788999988754
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.028 Score=54.99 Aligned_cols=85 Identities=9% Similarity=0.203 Sum_probs=52.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc-h
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT-T 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~-s 142 (406)
.+|+|+| .|.+|+.+.+.|..+ .+++.........-..+... . ...++ ++.+.++|+|++|+|... +
T Consensus 138 ktvGIiG-lG~IG~~vA~~l~~~-G~~V~~~dr~~~~~~~~~~~--------~-~~~~l-~ell~~aDvV~l~lPlt~~t 205 (324)
T 3evt_A 138 QQLLIYG-TGQIGQSLAAKASAL-GMHVIGVNTTGHPADHFHET--------V-AFTAT-ADALATANFIVNALPLTPTT 205 (324)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESSCCCCTTCSEE--------E-EGGGC-HHHHHHCSEEEECCCCCGGG
T ss_pred CeEEEEC-cCHHHHHHHHHHHhC-CCEEEEECCCcchhHhHhhc--------c-ccCCH-HHHHhhCCEEEEcCCCchHH
Confidence 5799999 999999999999876 46776654221111111110 0 01112 223467999999999542 2
Q ss_pred -----HHHHhhCCCCCEEEEcCC
Q 015441 143 -----QEIIKGLPKSLKIVDLSA 160 (406)
Q Consensus 143 -----~~~~~~l~~G~~VIDlSa 160 (406)
.+....++.|..+||.|-
T Consensus 206 ~~li~~~~l~~mk~gailIN~aR 228 (324)
T 3evt_A 206 HHLFSTELFQQTKQQPMLINIGR 228 (324)
T ss_dssp TTCBSHHHHHTCCSCCEEEECSC
T ss_pred HHhcCHHHHhcCCCCCEEEEcCC
Confidence 334445677999998774
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.55 E-value=0.011 Score=55.41 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=26.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
++|.|.||||++|+.|++.|.+.. .+++.+.
T Consensus 13 ~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~ 43 (292)
T 1vl0_A 13 MKILITGANGQLGREIQKQLKGKN-VEVIPTD 43 (292)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSS-EEEEEEC
T ss_pred ceEEEECCCChHHHHHHHHHHhCC-CeEEecc
Confidence 689999999999999999998753 5666653
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0084 Score=58.76 Aligned_cols=32 Identities=25% Similarity=0.459 Sum_probs=26.4
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+++|.|.||||++|+.|++.|.+.. .+++.+.
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~ 36 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVG-HHVRAQV 36 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTT-CCEEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEE
Confidence 3579999999999999999998643 5777665
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.016 Score=49.78 Aligned_cols=78 Identities=17% Similarity=0.153 Sum_probs=49.6
Q ss_pred ccEEEEECcc---cHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 63 QVRIGLLGAS---GYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 63 ~ikVaIvGAT---G~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
..+|+|+||+ |..|..+++.|.++. +++..+... ++.+. + .+.+..+ .+....+|+++.|+|.
T Consensus 22 p~~iaVVGas~~~g~~G~~~~~~l~~~G-~~v~~Vnp~---~~~i~-------G--~~~y~sl-~~l~~~vDlvvi~vp~ 87 (144)
T 2d59_A 22 YKKIALVGASPKPERDANIVMKYLLEHG-YDVYPVNPK---YEEVL-------G--RKCYPSV-LDIPDKIEVVDLFVKP 87 (144)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTT-CEEEEECTT---CSEET-------T--EECBSSG-GGCSSCCSEEEECSCH
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHHCC-CEEEEECCC---CCeEC-------C--eeccCCH-HHcCCCCCEEEEEeCH
Confidence 3579999998 899999999888654 366666432 12221 1 1111111 1111368999999999
Q ss_pred cchHHHHhhC-CCCCE
Q 015441 140 GTTQEIIKGL-PKSLK 154 (406)
Q Consensus 140 ~~s~~~~~~l-~~G~~ 154 (406)
....+.+..+ ++|++
T Consensus 88 ~~~~~vv~~~~~~gi~ 103 (144)
T 2d59_A 88 KLTMEYVEQAIKKGAK 103 (144)
T ss_dssp HHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHcCCC
Confidence 8888877654 55654
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0086 Score=56.38 Aligned_cols=87 Identities=17% Similarity=0.179 Sum_probs=51.5
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc-
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT- 141 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~- 141 (406)
|+||+|+| .|.+|..+.+.|.. ..++.. .+++.. +.... ......... . .+.+.++|+||.|++...
T Consensus 1 M~~i~iiG-~G~~G~~~a~~l~~--g~~V~~-~~~~~~--~~~~~----~~~g~~~~~-~-~~~~~~~D~vi~~v~~~~~ 68 (289)
T 2cvz_A 1 MEKVAFIG-LGAMGYPMAGHLAR--RFPTLV-WNRTFE--KALRH----QEEFGSEAV-P-LERVAEARVIFTCLPTTRE 68 (289)
T ss_dssp -CCEEEEC-CSTTHHHHHHHHHT--TSCEEE-ECSSTH--HHHHH----HHHHCCEEC-C-GGGGGGCSEEEECCSSHHH
T ss_pred CCeEEEEc-ccHHHHHHHHHHhC--CCeEEE-EeCCHH--HHHHH----HHCCCcccC-H-HHHHhCCCEEEEeCCChHH
Confidence 35899999 89999999999987 456644 343211 11110 000011111 1 223457899999999764
Q ss_pred hHHHHh----hCCCCCEEEEcCCc
Q 015441 142 TQEIIK----GLPKSLKIVDLSAD 161 (406)
Q Consensus 142 s~~~~~----~l~~G~~VIDlSa~ 161 (406)
..+.++ .+..|..|||.|..
T Consensus 69 ~~~v~~~l~~~l~~~~~vv~~s~~ 92 (289)
T 2cvz_A 69 VYEVAEALYPYLREGTYWVDATSG 92 (289)
T ss_dssp HHHHHHHHTTTCCTTEEEEECSCC
T ss_pred HHHHHHHHHhhCCCCCEEEECCCC
Confidence 343332 24568889998764
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.015 Score=56.55 Aligned_cols=33 Identities=15% Similarity=0.389 Sum_probs=27.8
Q ss_pred ccEEEEECcccHHHHHHHHHHHcC-CCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANH-PYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~h-p~~elv~l~ 95 (406)
+++|.|.||||++|+.|++.|++. ...+++.+.
T Consensus 10 ~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~ 43 (362)
T 3sxp_A 10 NQTILITGGAGFVGSNLAFHFQENHPKAKVVVLD 43 (362)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEE
Confidence 468999999999999999999873 467887775
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.46 E-value=0.018 Score=54.03 Aligned_cols=88 Identities=14% Similarity=0.210 Sum_probs=51.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
+||+|+| .|.+|+.+.+.|.... .++..+ +++.. +..... .. +.......+. .+. .++|+||+|+|.....
T Consensus 1 m~i~iiG-~G~~G~~~a~~l~~~g-~~V~~~-~~~~~--~~~~~~-~~-g~~~~~~~~~-~~~-~~~D~vi~av~~~~~~ 71 (279)
T 2f1k_A 1 MKIGVVG-LGLIGASLAGDLRRRG-HYLIGV-SRQQS--TCEKAV-ER-QLVDEAGQDL-SLL-QTAKIIFLCTPIQLIL 71 (279)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTT-CEEEEE-CSCHH--HHHHHH-HT-TSCSEEESCG-GGG-TTCSEEEECSCHHHHH
T ss_pred CEEEEEc-CcHHHHHHHHHHHHCC-CEEEEE-ECCHH--HHHHHH-hC-CCCccccCCH-HHh-CCCCEEEEECCHHHHH
Confidence 4899999 8999999999988653 365544 33211 111100 00 1000001111 122 6799999999987665
Q ss_pred HHHhh----CCCCCEEEEcCC
Q 015441 144 EIIKG----LPKSLKIVDLSA 160 (406)
Q Consensus 144 ~~~~~----l~~G~~VIDlSa 160 (406)
+.++. +..+..|||.++
T Consensus 72 ~~~~~l~~~~~~~~~vv~~~~ 92 (279)
T 2f1k_A 72 PTLEKLIPHLSPTAIVTDVAS 92 (279)
T ss_dssp HHHHHHGGGSCTTCEEEECCS
T ss_pred HHHHHHHhhCCCCCEEEECCC
Confidence 55543 456788999855
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.014 Score=54.28 Aligned_cols=89 Identities=11% Similarity=0.194 Sum_probs=52.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
+||+|+| .|.+|+.+.+.|......++ .+.+++.. -+.+...+ + +....+. .+.. ++|+||+|++....
T Consensus 1 m~i~iiG-~G~mG~~~a~~l~~~g~~~v-~~~~r~~~~~~~~~~~~----g--~~~~~~~-~~~~-~~D~vi~~v~~~~~ 70 (263)
T 1yqg_A 1 MNVYFLG-GGNMAAAVAGGLVKQGGYRI-YIANRGAEKRERLEKEL----G--VETSATL-PELH-SDDVLILAVKPQDM 70 (263)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHCSCEE-EEECSSHHHHHHHHHHT----C--CEEESSC-CCCC-TTSEEEECSCHHHH
T ss_pred CEEEEEC-chHHHHHHHHHHHHCCCCeE-EEECCCHHHHHHHHHhc----C--CEEeCCH-HHHh-cCCEEEEEeCchhH
Confidence 4899999 79999999998875431344 34444321 01111100 1 1111111 2335 89999999996655
Q ss_pred HHHHhhCC-CCCEEEEcCCcc
Q 015441 143 QEIIKGLP-KSLKIVDLSADF 162 (406)
Q Consensus 143 ~~~~~~l~-~G~~VIDlSa~f 162 (406)
.+.++.+. .+..|||+++..
T Consensus 71 ~~v~~~l~~~~~ivv~~~~g~ 91 (263)
T 1yqg_A 71 EAACKNIRTNGALVLSVAAGL 91 (263)
T ss_dssp HHHHTTCCCTTCEEEECCTTC
T ss_pred HHHHHHhccCCCEEEEecCCC
Confidence 66665553 278899995544
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=95.44 E-value=0.033 Score=52.95 Aligned_cols=32 Identities=19% Similarity=0.391 Sum_probs=26.4
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.++|.|.||||++|+.|++.|++.. .+++.+.
T Consensus 11 ~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~ 42 (342)
T 1y1p_A 11 GSLVLVTGANGFVASHVVEQLLEHG-YKVRGTA 42 (342)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred CCEEEEECCccHHHHHHHHHHHHCC-CEEEEEe
Confidence 3689999999999999999998764 4676664
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=95.44 E-value=0.02 Score=54.80 Aligned_cols=34 Identities=15% Similarity=0.381 Sum_probs=26.3
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+|+++|.|.||||++|+.|++.|++.. .+++.+.
T Consensus 7 ~~~~~vlVTGatGfIG~~l~~~Ll~~G-~~V~~~~ 40 (338)
T 2rh8_A 7 IGKKTACVVGGTGFVASLLVKLLLQKG-YAVNTTV 40 (338)
T ss_dssp --CCEEEEECTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCC-CEEEEEE
Confidence 345789999999999999999988653 4666654
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.011 Score=56.23 Aligned_cols=32 Identities=22% Similarity=0.450 Sum_probs=26.2
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|++|.|.||||++|+.|++.|.+.. .+++.+.
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~ 32 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDEG-LSVVVVD 32 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCC-CEEEEEe
Confidence 4689999999999999999998754 5776664
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.017 Score=55.83 Aligned_cols=90 Identities=12% Similarity=0.235 Sum_probs=57.1
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCC--C-CCEEEEcCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFS--N-VDAVFCCLP 138 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~--~-vDvVF~al~ 138 (406)
.+.+|+|+||||..|+.+++.|.++ .+++++....+..|+.+. + ++.+..++ +... + +|+++.++|
T Consensus 12 ~~~~vvV~Gasg~~G~~~~~~l~~~-g~~~v~~VnP~~~g~~i~-------G--~~vy~sl~-el~~~~~~~DvaIi~vp 80 (297)
T 2yv2_A 12 SETRVLVQGITGREGSFHAKAMLEY-GTKVVAGVTPGKGGSEVH-------G--VPVYDSVK-EALAEHPEINTSIVFVP 80 (297)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTTCEET-------T--EEEESSHH-HHHHHCTTCCEEEECCC
T ss_pred CCCEEEEECCCCCHHHHHHHHHHhC-CCcEEEEeCCCCCCceEC-------C--EeeeCCHH-HHhhcCCCCCEEEEecC
Confidence 3468999999999999999988876 456554444443333221 1 11121111 1111 3 899999999
Q ss_pred CcchHHHHhhC-CCCCE-EEEcCCcc
Q 015441 139 HGTTQEIIKGL-PKSLK-IVDLSADF 162 (406)
Q Consensus 139 ~~~s~~~~~~l-~~G~~-VIDlSa~f 162 (406)
.....+.+..+ ++|++ +|=.+.-|
T Consensus 81 ~~~~~~~v~ea~~~Gi~~vVi~t~G~ 106 (297)
T 2yv2_A 81 APFAPDAVYEAVDAGIRLVVVITEGI 106 (297)
T ss_dssp GGGHHHHHHHHHHTTCSEEEECCCCC
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 99998888764 77876 44355555
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0089 Score=58.28 Aligned_cols=72 Identities=17% Similarity=0.267 Sum_probs=43.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcC-CC-ceEEEEeccC-cCCccccccccCccccCCCcccc----cCcccCCCCCEEEEc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANH-PY-FGIKLMTADR-KAGQSIGSVFPHLISQDLPTMVA----VKDADFSNVDAVFCC 136 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~h-p~-~elv~l~s~~-~~G~~i~~v~p~l~~~~~~~~~~----~~~~~~~~vDvVF~a 136 (406)
+||+|+||+|+||..++.+|..+ +. .|++.+.... ..|+..+..|-.+ .. .+.. -+.+++.++|+|+++
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~---~~-~v~~~~~~~~~~~~~~aDivii~ 76 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPT---AV-KIKGFSGEDATPALEGADVVLIS 76 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCS---SE-EEEEECSSCCHHHHTTCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCC---Cc-eEEEecCCCcHHHhCCCCEEEEe
Confidence 48999999999999999998764 44 3666664332 2243333222111 10 1111 123457899999998
Q ss_pred CCC
Q 015441 137 LPH 139 (406)
Q Consensus 137 l~~ 139 (406)
.+.
T Consensus 77 ag~ 79 (312)
T 3hhp_A 77 AGV 79 (312)
T ss_dssp CSC
T ss_pred CCC
Confidence 863
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0058 Score=56.82 Aligned_cols=93 Identities=18% Similarity=0.223 Sum_probs=52.4
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCC---ceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPY---FGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLP 138 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~---~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~ 138 (406)
|++||+|+| .|.+|+.+.+.|.+... .++. +.+++.. +.......+ + +....+. .+...++|+||+|++
T Consensus 1 M~~~i~iIG-~G~mG~~~a~~l~~~g~~~~~~V~-~~~r~~~--~~~~~~~~~-g--~~~~~~~-~e~~~~aDvVilav~ 72 (247)
T 3gt0_A 1 MDKQIGFIG-CGNMGMAMIGGMINKNIVSSNQII-CSDLNTA--NLKNASEKY-G--LTTTTDN-NEVAKNADILILSIK 72 (247)
T ss_dssp CCCCEEEEC-CSHHHHHHHHHHHHTTSSCGGGEE-EECSCHH--HHHHHHHHH-C--CEECSCH-HHHHHHCSEEEECSC
T ss_pred CCCeEEEEC-ccHHHHHHHHHHHhCCCCCCCeEE-EEeCCHH--HHHHHHHHh-C--CEEeCCh-HHHHHhCCEEEEEeC
Confidence 457899999 99999999999885432 2454 4444321 111100000 1 1101111 122357899999998
Q ss_pred CcchHHHHhhC----CCCCEEEEcCCcc
Q 015441 139 HGTTQEIIKGL----PKSLKIVDLSADF 162 (406)
Q Consensus 139 ~~~s~~~~~~l----~~G~~VIDlSa~f 162 (406)
.....+.++.+ ..+..||+.++..
T Consensus 73 ~~~~~~v~~~l~~~l~~~~~vvs~~~gi 100 (247)
T 3gt0_A 73 PDLYASIINEIKEIIKNDAIIVTIAAGK 100 (247)
T ss_dssp TTTHHHHC---CCSSCTTCEEEECSCCS
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEecCCC
Confidence 87777766543 3477788666554
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=95.42 E-value=0.023 Score=46.90 Aligned_cols=76 Identities=16% Similarity=0.248 Sum_probs=40.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCcccccccc--CccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFP--HLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p--~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
++|+|+|+ |.+|+.+++.|.+.. .+++.+..+...-..+..-+. .+.+ +......+....+.++|+||.|++...
T Consensus 5 m~i~IiG~-G~iG~~~a~~L~~~g-~~v~~~d~~~~~~~~~~~~~~~~~~~~-d~~~~~~l~~~~~~~~d~vi~~~~~~~ 81 (140)
T 1lss_A 5 MYIIIAGI-GRVGYTLAKSLSEKG-HDIVLIDIDKDICKKASAEIDALVING-DCTKIKTLEDAGIEDADMYIAVTGKEE 81 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHCSSEEEES-CTTSHHHHHHTTTTTCSEEEECCSCHH
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC-CeEEEEECCHHHHHHHHHhcCcEEEEc-CCCCHHHHHHcCcccCCEEEEeeCCch
Confidence 58999995 999999999998653 566655322111011110000 0111 111111111122467999999998764
Q ss_pred h
Q 015441 142 T 142 (406)
Q Consensus 142 s 142 (406)
.
T Consensus 82 ~ 82 (140)
T 1lss_A 82 V 82 (140)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0099 Score=55.68 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=23.2
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPY 88 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~ 88 (406)
+|++|.|.||||++|+.|++.|.+...
T Consensus 5 ~~~~vlVtGatG~iG~~l~~~L~~~g~ 31 (319)
T 4b8w_A 5 QSMRILVTGGSGLVGKAIQKVVADGAG 31 (319)
T ss_dssp CCCEEEEETCSSHHHHHHHHHHHTTTC
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhcCC
Confidence 356899999999999999999986543
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0055 Score=60.50 Aligned_cols=86 Identities=9% Similarity=0.156 Sum_probs=54.1
Q ss_pred ccEEEEECcccHHHH-HHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccC--CCCCEEEEcCC
Q 015441 63 QVRIGLLGASGYTGA-EIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCLP 138 (406)
Q Consensus 63 ~ikVaIvGATG~vG~-eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~al~ 138 (406)
++|||||| +|.+|. .++..|. +|.++++++.++... .+.+...++. ...+.++ ++.+ .++|+|+.|+|
T Consensus 26 ~irvgiiG-~G~~~~~~~~~~~~-~~~~~lvav~d~~~~~a~~~a~~~~~-----~~~~~~~-~~ll~~~~vD~V~I~tp 97 (361)
T 3u3x_A 26 ELRFAAVG-LNHNHIYGQVNCLL-RAGARLAGFHEKDDALAAEFSAVYAD-----ARRIATA-EEILEDENIGLIVSAAV 97 (361)
T ss_dssp CCEEEEEC-CCSTTHHHHHHHHH-HTTCEEEEEECSCHHHHHHHHHHSSS-----CCEESCH-HHHHTCTTCCEEEECCC
T ss_pred CcEEEEEC-cCHHHHHHHHHHhh-cCCcEEEEEEcCCHHHHHHHHHHcCC-----CcccCCH-HHHhcCCCCCEEEEeCC
Confidence 58999999 688885 5666665 589999999985431 1122221210 0111111 1111 36899999999
Q ss_pred CcchHHHHhh-CCCCCEEE
Q 015441 139 HGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 139 ~~~s~~~~~~-l~~G~~VI 156 (406)
+..-.+++.+ +++|+.|+
T Consensus 98 ~~~H~~~~~~al~aGkhVl 116 (361)
T 3u3x_A 98 SSERAELAIRAMQHGKDVL 116 (361)
T ss_dssp HHHHHHHHHHHHHTTCEEE
T ss_pred hHHHHHHHHHHHHCCCeEE
Confidence 8877777754 68898776
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=95.35 E-value=0.024 Score=55.28 Aligned_cols=85 Identities=21% Similarity=0.408 Sum_probs=52.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc-h
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT-T 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~-s 142 (406)
.+|+|+| .|.+|+.+.+.|..+ .+++.........-..+.. +.+ ..++ ++.+.++|+|++++|... +
T Consensus 140 ~tvGIiG-~G~IG~~vA~~l~~~-G~~V~~~dr~~~~~~~~~~----~~~-----~~~l-~ell~~aDiV~l~~Plt~~t 207 (315)
T 3pp8_A 140 FSVGIMG-AGVLGAKVAESLQAW-GFPLRCWSRSRKSWPGVES----YVG-----REEL-RAFLNQTRVLINLLPNTAQT 207 (315)
T ss_dssp CCEEEEC-CSHHHHHHHHHHHTT-TCCEEEEESSCCCCTTCEE----EES-----HHHH-HHHHHTCSEEEECCCCCGGG
T ss_pred CEEEEEe-eCHHHHHHHHHHHHC-CCEEEEEcCCchhhhhhhh----hcc-----cCCH-HHHHhhCCEEEEecCCchhh
Confidence 5799999 999999999999876 3577665422111011110 000 0112 223468999999999542 2
Q ss_pred -----HHHHhhCCCCCEEEEcCC
Q 015441 143 -----QEIIKGLPKSLKIVDLSA 160 (406)
Q Consensus 143 -----~~~~~~l~~G~~VIDlSa 160 (406)
.+....++.|..+||.|-
T Consensus 208 ~~li~~~~l~~mk~gailIN~aR 230 (315)
T 3pp8_A 208 VGIINSELLDQLPDGAYVLNLAR 230 (315)
T ss_dssp TTCBSHHHHTTSCTTEEEEECSC
T ss_pred hhhccHHHHhhCCCCCEEEECCC
Confidence 333344567899998764
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.009 Score=55.59 Aligned_cols=93 Identities=13% Similarity=0.224 Sum_probs=54.5
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC---c----c-----ccccccCccccCCCcccccCcccCCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG---Q----S-----IGSVFPHLISQDLPTMVAVKDADFSNV 130 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G---~----~-----i~~v~p~l~~~~~~~~~~~~~~~~~~v 130 (406)
++||+|+| +|.+|+.+.+.|.... .++... +++..- + . +......+. .. ...+. .+...++
T Consensus 19 ~~kIgiIG-~G~mG~alA~~L~~~G-~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~-~e~~~~a 91 (245)
T 3dtt_A 19 GMKIAVLG-TGTVGRTMAGALADLG-HEVTIG-TRDPKATLARAEPDAMGAPPFSQWLPEHP--HV-HLAAF-ADVAAGA 91 (245)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEE-ESCHHHHHTCC-------CCHHHHGGGST--TC-EEEEH-HHHHHHC
T ss_pred CCeEEEEC-CCHHHHHHHHHHHHCC-CEEEEE-eCChhhhhhhhhhhhhcchhhhHHHhhcC--ce-eccCH-HHHHhcC
Confidence 46899999 9999999999998653 465544 332210 0 0 111000000 00 01111 1223578
Q ss_pred CEEEEcCCCcchHHHHhhC----CCCCEEEEcCCcc
Q 015441 131 DAVFCCLPHGTTQEIIKGL----PKSLKIVDLSADF 162 (406)
Q Consensus 131 DvVF~al~~~~s~~~~~~l----~~G~~VIDlSa~f 162 (406)
|+||+|+|.....+.+..+ ..|..|||.++.+
T Consensus 92 DvVilavp~~~~~~~~~~i~~~~l~g~ivi~~s~~~ 127 (245)
T 3dtt_A 92 ELVVNATEGASSIAALTAAGAENLAGKILVDIANPL 127 (245)
T ss_dssp SEEEECSCGGGHHHHHHHHCHHHHTTSEEEECCCCE
T ss_pred CEEEEccCcHHHHHHHHHhhhhhcCCCEEEECCCCC
Confidence 9999999987665544322 1688999999765
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.024 Score=55.17 Aligned_cols=32 Identities=22% Similarity=0.217 Sum_probs=26.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcC-CCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANH-PYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~h-p~~elv~l~ 95 (406)
++|.|.||||++|+.|++.|++. ...+++.+.
T Consensus 22 k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~ 54 (344)
T 2gn4_A 22 QTILITGGTGSFGKCFVRKVLDTTNAKKIIVYS 54 (344)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEE
Confidence 58999999999999999999876 434776664
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.012 Score=56.46 Aligned_cols=88 Identities=19% Similarity=0.258 Sum_probs=50.8
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCCC-c
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH-G 140 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~-~ 140 (406)
++||+|+| .|.+|+.+.+.|.... .++.. .+++.. -+.+.. .+ ....... .+.+.++|+||+|+|. .
T Consensus 30 ~~~I~iIG-~G~mG~~~a~~l~~~g-~~V~~-~~~~~~~~~~~~~-----~g--~~~~~~~-~~~~~~~DvVi~av~~~~ 98 (316)
T 2uyy_A 30 DKKIGFLG-LGLMGSGIVSNLLKMG-HTVTV-WNRTAEKCDLFIQ-----EG--ARLGRTP-AEVVSTCDITFACVSDPK 98 (316)
T ss_dssp SSCEEEEC-CSHHHHHHHHHHHHTT-CCEEE-ECSSGGGGHHHHH-----TT--CEECSCH-HHHHHHCSEEEECCSSHH
T ss_pred CCeEEEEc-ccHHHHHHHHHHHhCC-CEEEE-EeCCHHHHHHHHH-----cC--CEEcCCH-HHHHhcCCEEEEeCCCHH
Confidence 36899999 7999999999988643 35543 333221 111111 01 1001111 1223578999999994 3
Q ss_pred chHHHHh-------hCCCCCEEEEcCCc
Q 015441 141 TTQEIIK-------GLPKSLKIVDLSAD 161 (406)
Q Consensus 141 ~s~~~~~-------~l~~G~~VIDlSa~ 161 (406)
...+.+. .+..|..|||.|..
T Consensus 99 ~~~~v~~~~~~~~~~l~~~~~vv~~s~~ 126 (316)
T 2uyy_A 99 AAKDLVLGPSGVLQGIRPGKCYVDMSTV 126 (316)
T ss_dssp HHHHHHHSTTCGGGGCCTTCEEEECSCC
T ss_pred HHHHHHcCchhHhhcCCCCCEEEECCCC
Confidence 3344432 24568899998863
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.0081 Score=58.51 Aligned_cols=92 Identities=17% Similarity=0.153 Sum_probs=54.6
Q ss_pred ccEEEEECcccHHHHHHHHHHHc-CCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLAN-HPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~-hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
..+++|+| +|..|+..++.|.. +| ++-+.+.+++ .-+.+..-+....+.+.... +. ++...++|+||+|++...
T Consensus 121 ~~~v~iIG-aG~~a~~~~~al~~~~~-~~~V~v~~r~-~a~~la~~l~~~~g~~~~~~-~~-~eav~~aDIVi~aT~s~~ 195 (313)
T 3hdj_A 121 SSVLGLFG-AGTQGAEHAAQLSARFA-LEAILVHDPY-ASPEILERIGRRCGVPARMA-AP-ADIAAQADIVVTATRSTT 195 (313)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHHSC-CCEEEEECTT-CCHHHHHHHHHHHTSCEEEC-CH-HHHHHHCSEEEECCCCSS
T ss_pred CcEEEEEC-ccHHHHHHHHHHHHhCC-CcEEEEECCc-HHHHHHHHHHHhcCCeEEEe-CH-HHHHhhCCEEEEccCCCC
Confidence 36899999 99999999998875 56 5555566655 22222211000001111101 11 222357999999999753
Q ss_pred hHHHH--hhCCCCCEEEEcCCc
Q 015441 142 TQEII--KGLPKSLKIVDLSAD 161 (406)
Q Consensus 142 s~~~~--~~l~~G~~VIDlSa~ 161 (406)
.+. ..++.|..|+|.+++
T Consensus 196 --pvl~~~~l~~G~~V~~vGs~ 215 (313)
T 3hdj_A 196 --PLFAGQALRAGAFVGAIGSS 215 (313)
T ss_dssp --CSSCGGGCCTTCEEEECCCS
T ss_pred --cccCHHHcCCCcEEEECCCC
Confidence 222 235779999999875
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.016 Score=55.74 Aligned_cols=32 Identities=19% Similarity=0.239 Sum_probs=26.9
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|++|.|.||||++|+.|++.|.+.. .+++.+.
T Consensus 21 ~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~ 52 (333)
T 2q1w_A 21 MKKVFITGICGQIGSHIAELLLERG-DKVVGID 52 (333)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCC-CEEEEEE
Confidence 4689999999999999999998754 5777664
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.021 Score=54.08 Aligned_cols=97 Identities=15% Similarity=0.239 Sum_probs=52.6
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC--------CccccccccCccccCCCcccccC-cccCCCCCE
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA--------GQSIGSVFPHLISQDLPTMVAVK-DADFSNVDA 132 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~--------G~~i~~v~p~l~~~~~~~~~~~~-~~~~~~vDv 132 (406)
||+||+|+| .|.+|..+...|.+.. .++..+. ++.. |..+.. .+......+......+ ...+.++|+
T Consensus 2 ~~m~i~iiG-~G~~G~~~a~~l~~~g-~~V~~~~-r~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~ 77 (316)
T 2ew2_A 2 NAMKIAIAG-AGAMGSRLGIMLHQGG-NDVTLID-QWPAHIEAIRKNGLIADF-NGEEVVANLPIFSPEEIDHQNEQVDL 77 (316)
T ss_dssp --CEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEC-SCHHHHHHHHHHCEEEEE-TTEEEEECCCEECGGGCCTTSCCCSE
T ss_pred CCCeEEEEC-cCHHHHHHHHHHHhCC-CcEEEEE-CCHHHHHHHHhCCEEEEe-CCCeeEecceeecchhhcccCCCCCE
Confidence 457999999 6999999999998643 3665543 3210 111100 0000000011000000 111237999
Q ss_pred EEEcCCCcchHHHHhh----CCCCCEEEEcCCcc
Q 015441 133 VFCCLPHGTTQEIIKG----LPKSLKIVDLSADF 162 (406)
Q Consensus 133 VF~al~~~~s~~~~~~----l~~G~~VIDlSa~f 162 (406)
||+|++.....+.++. +..+..|||++..+
T Consensus 78 vi~~v~~~~~~~v~~~l~~~l~~~~~iv~~~~g~ 111 (316)
T 2ew2_A 78 IIALTKAQQLDAMFKAIQPMITEKTYVLCLLNGL 111 (316)
T ss_dssp EEECSCHHHHHHHHHHHGGGCCTTCEEEECCSSS
T ss_pred EEEEeccccHHHHHHHHHHhcCCCCEEEEecCCC
Confidence 9999997766555543 34578899987654
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.011 Score=60.99 Aligned_cols=33 Identities=21% Similarity=0.533 Sum_probs=26.5
Q ss_pred CccEEEEECcccHHHHHHHHHHHcC-CCceEEEEe
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANH-PYFGIKLMT 95 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~h-p~~elv~l~ 95 (406)
||+||+|+| .|++|..+...|..+ +..+++.+.
T Consensus 8 ~~mkI~VIG-~G~vG~~~A~~La~~g~g~~V~~~D 41 (481)
T 2o3j_A 8 KVSKVVCVG-AGYVGGPTCAMIAHKCPHITVTVVD 41 (481)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHHHCTTSEEEEEC
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhcCCCCEEEEEE
Confidence 457999999 999999999999864 356776663
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.036 Score=54.66 Aligned_cols=82 Identities=15% Similarity=0.246 Sum_probs=49.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc-h
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT-T 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~-s 142 (406)
.+|+|+| .|.+|+.+.+.|..+. +++.+. ++... +... .....++ ++.+.++|+|++|+|... +
T Consensus 172 ktiGIIG-lG~IG~~vA~~l~~~G-~~V~~~-dr~~~-~~~~----------~~~~~sl-~ell~~aDvVil~vP~t~~t 236 (340)
T 4dgs_A 172 KRIGVLG-LGQIGRALASRAEAFG-MSVRYW-NRSTL-SGVD----------WIAHQSP-VDLARDSDVLAVCVAASAAT 236 (340)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHTTT-CEEEEE-CSSCC-TTSC----------CEECSSH-HHHHHTCSEEEECC------
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCC-CEEEEE-cCCcc-cccC----------ceecCCH-HHHHhcCCEEEEeCCCCHHH
Confidence 5899999 9999999999998764 566544 33221 1000 0001111 223468999999999432 2
Q ss_pred -----HHHHhhCCCCCEEEEcCC
Q 015441 143 -----QEIIKGLPKSLKIVDLSA 160 (406)
Q Consensus 143 -----~~~~~~l~~G~~VIDlSa 160 (406)
.+..+.++.|..+||.+.
T Consensus 237 ~~li~~~~l~~mk~gailIN~aR 259 (340)
T 4dgs_A 237 QNIVDASLLQALGPEGIVVNVAR 259 (340)
T ss_dssp ----CHHHHHHTTTTCEEEECSC
T ss_pred HHHhhHHHHhcCCCCCEEEECCC
Confidence 333445677899998764
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.025 Score=54.16 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=26.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
++|.|.||||++|+.|++.|++.. .+++.+.
T Consensus 21 ~~vlVTGasG~iG~~l~~~L~~~g-~~V~~~~ 51 (330)
T 2pzm_A 21 MRILITGGAGCLGSNLIEHWLPQG-HEILVID 51 (330)
T ss_dssp CEEEEETTTSHHHHHHHHHHGGGT-CEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEE
Confidence 589999999999999999998754 5776665
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.021 Score=54.99 Aligned_cols=33 Identities=12% Similarity=0.215 Sum_probs=27.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCC----ceEEEEec
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPY----FGIKLMTA 96 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~----~elv~l~s 96 (406)
++|.|.||||++|+.|++.|.+... .+++.+..
T Consensus 2 ~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r 38 (364)
T 2v6g_A 2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVAR 38 (364)
T ss_dssp EEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEES
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeC
Confidence 4799999999999999999987542 67777653
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.018 Score=55.57 Aligned_cols=32 Identities=13% Similarity=0.207 Sum_probs=26.7
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+++|.|.||||++|+.|++.|.+.. .+++.+.
T Consensus 27 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~ 58 (352)
T 1sb8_A 27 PKVWLITGVAGFIGSNLLETLLKLD-QKVVGLD 58 (352)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCC-CEEEEEe
Confidence 4689999999999999999998764 5776664
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=95.22 E-value=0.033 Score=47.61 Aligned_cols=83 Identities=19% Similarity=0.225 Sum_probs=50.7
Q ss_pred ccEEEEECcc---cHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 63 QVRIGLLGAS---GYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 63 ~ikVaIvGAT---G~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
..+|+|+|+| |..|..+++.|.+.. +++..+..+. +.+. + .+.+..+ .+....+|+|+.|+|.
T Consensus 14 p~~IavIGaS~~~g~~G~~~~~~L~~~G-~~V~~vnp~~---~~i~-------G--~~~~~s~-~el~~~vDlvii~vp~ 79 (138)
T 1y81_A 14 FRKIALVGASKNPAKYGNIILKDLLSKG-FEVLPVNPNY---DEIE-------G--LKCYRSV-RELPKDVDVIVFVVPP 79 (138)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTT-CEEEEECTTC---SEET-------T--EECBSSG-GGSCTTCCEEEECSCH
T ss_pred CCeEEEEeecCCCCCHHHHHHHHHHHCC-CEEEEeCCCC---CeEC-------C--eeecCCH-HHhCCCCCEEEEEeCH
Confidence 4689999987 899999999888654 4655554321 2221 1 1111111 1112468999999998
Q ss_pred cchHHHHhhC-CCCC--EEEEcC
Q 015441 140 GTTQEIIKGL-PKSL--KIVDLS 159 (406)
Q Consensus 140 ~~s~~~~~~l-~~G~--~VIDlS 159 (406)
....+.+..+ ++|+ .+++.+
T Consensus 80 ~~v~~v~~~~~~~g~~~i~~~~~ 102 (138)
T 1y81_A 80 KVGLQVAKEAVEAGFKKLWFQPG 102 (138)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTT
T ss_pred HHHHHHHHHHHHcCCCEEEEcCc
Confidence 7777776543 4554 555443
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=95.21 E-value=0.0069 Score=59.20 Aligned_cols=33 Identities=24% Similarity=0.455 Sum_probs=25.9
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCC-ceEEEE
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPY-FGIKLM 94 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~-~elv~l 94 (406)
+++||+|+||+|++|..++..|...+. .+++.+
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~ 40 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLY 40 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEE
Confidence 457999999999999999998876543 456654
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=95.21 E-value=0.011 Score=60.62 Aligned_cols=32 Identities=22% Similarity=0.521 Sum_probs=25.4
Q ss_pred CccEEEEECcccHHHHHHHHHHHcC-CCceEEEE
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANH-PYFGIKLM 94 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~h-p~~elv~l 94 (406)
+|+||+|+| +|++|..+...|... +..+++.+
T Consensus 4 ~~mkI~VIG-~G~mG~~lA~~La~~g~G~~V~~~ 36 (467)
T 2q3e_A 4 EIKKICCIG-AGYVGGPTCSVIAHMCPEIRVTVV 36 (467)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHHHCTTSEEEEE
T ss_pred CccEEEEEC-CCHHHHHHHHHHHhcCCCCEEEEE
Confidence 346999999 899999999999865 24576555
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=95.10 E-value=0.024 Score=60.21 Aligned_cols=34 Identities=18% Similarity=0.443 Sum_probs=28.7
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
++++|.|.||||++|+.|++.|.+.+..+++.+.
T Consensus 314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~ 347 (660)
T 1z7e_A 314 RRTRVLILGVNGFIGNHLTERLLREDHYEVYGLD 347 (660)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEE
T ss_pred cCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEE
Confidence 4568999999999999999999876556877775
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=95.06 E-value=0.011 Score=57.76 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=26.3
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCc------eEEEE
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYF------GIKLM 94 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~------elv~l 94 (406)
++||+|+||+|+||..++..|...+.+ +++.+
T Consensus 5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~ 42 (329)
T 1b8p_A 5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLL 42 (329)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEE
Confidence 479999999999999999988865543 67665
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.015 Score=55.73 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=27.0
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|+++|.|.||||++|+.|++.|++.. .+++.+.
T Consensus 1 M~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~ 33 (348)
T 1ek6_A 1 MAEKVLVTGGAGYIGSHTVLELLEAG-YLPVVID 33 (348)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTT-CCEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEe
Confidence 45689999999999999999998653 5676664
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.024 Score=54.88 Aligned_cols=75 Identities=17% Similarity=0.246 Sum_probs=42.2
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC---CccccccccC-ccccCCCcccc-cCcccCCCCCEEEEc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA---GQSIGSVFPH-LISQDLPTMVA-VKDADFSNVDAVFCC 136 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~---G~~i~~v~p~-l~~~~~~~~~~-~~~~~~~~vDvVF~a 136 (406)
|++||+|+|| |++|..++..|...+.++ +.+.+.... |...+-.+.. ....... +.. .+.+++.++|+||.+
T Consensus 1 M~~kI~VIGa-G~vG~~~a~~la~~g~~~-v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~-i~~t~d~~a~~~aD~Vi~a 77 (309)
T 1ur5_A 1 MRKKISIIGA-GFVGSTTAHWLAAKELGD-IVLLDIVEGVPQGKALDLYEASPIEGFDVR-VTGTNNYADTANSDVIVVT 77 (309)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHTTCSE-EEEECSSSSHHHHHHHHHHTTHHHHTCCCC-EEEESCGGGGTTCSEEEEC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEeCCccHHHHHHHhHHHhHhhcCCCeE-EEECCCHHHHCCCCEEEEc
Confidence 4579999997 999999999998766557 455553321 1111000000 0000111 111 223457899999999
Q ss_pred CCC
Q 015441 137 LPH 139 (406)
Q Consensus 137 l~~ 139 (406)
.+.
T Consensus 78 ~g~ 80 (309)
T 1ur5_A 78 SGA 80 (309)
T ss_dssp CCC
T ss_pred CCC
Confidence 864
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.029 Score=48.26 Aligned_cols=82 Identities=13% Similarity=0.144 Sum_probs=50.0
Q ss_pred cEEEEECcc---cHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 64 VRIGLLGAS---GYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 64 ikVaIvGAT---G~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
.+|+|+|++ |..|..+++.|.+.. +++..+. .+..|+.+. + .+.+..++ +....+|+|+.|+|..
T Consensus 14 ~~IavIGas~~~g~~G~~~~~~L~~~G-~~v~~vn-p~~~g~~i~-------G--~~~~~sl~-el~~~~Dlvii~vp~~ 81 (145)
T 2duw_A 14 RTIALVGASDKPDRPSYRVMKYLLDQG-YHVIPVS-PKVAGKTLL-------G--QQGYATLA-DVPEKVDMVDVFRNSE 81 (145)
T ss_dssp CCEEEESCCSCTTSHHHHHHHHHHHHT-CCEEEEC-SSSTTSEET-------T--EECCSSTT-TCSSCCSEEECCSCST
T ss_pred CEEEEECcCCCCCChHHHHHHHHHHCC-CEEEEeC-CcccccccC-------C--eeccCCHH-HcCCCCCEEEEEeCHH
Confidence 579999998 889999999887543 3555543 333333331 1 11111111 1124789999999988
Q ss_pred chHHHHhhC-CCCC--EEEE
Q 015441 141 TTQEIIKGL-PKSL--KIVD 157 (406)
Q Consensus 141 ~s~~~~~~l-~~G~--~VID 157 (406)
...+.+..+ ++|+ .+++
T Consensus 82 ~v~~v~~~~~~~g~~~i~i~ 101 (145)
T 2duw_A 82 AAWGVAQEAIAIGAKTLWLQ 101 (145)
T ss_dssp HHHHHHHHHHHHTCCEEECC
T ss_pred HHHHHHHHHHHcCCCEEEEc
Confidence 777777543 4443 4554
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=94.96 E-value=0.076 Score=51.29 Aligned_cols=81 Identities=15% Similarity=0.265 Sum_probs=52.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc-h
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT-T 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~-s 142 (406)
.+|+|+| .|.+|+.+.+.|..+. +++... ++... .. . .. . ...+ ++.+.++|+|++|+|... +
T Consensus 125 ~~vgIIG-~G~IG~~~A~~l~~~G-~~V~~~-dr~~~-~~-~-----~~--~---~~~l-~ell~~aDvV~l~~P~~~~t 188 (303)
T 1qp8_A 125 EKVAVLG-LGEIGTRVGKILAALG-AQVRGF-SRTPK-EG-P-----WR--F---TNSL-EEALREARAAVCALPLNKHT 188 (303)
T ss_dssp CEEEEES-CSTHHHHHHHHHHHTT-CEEEEE-CSSCC-CS-S-----SC--C---BSCS-HHHHTTCSEEEECCCCSTTT
T ss_pred CEEEEEc-cCHHHHHHHHHHHHCC-CEEEEE-CCCcc-cc-C-----cc--c---CCCH-HHHHhhCCEEEEeCcCchHH
Confidence 5799999 9999999999998653 566544 33221 11 0 00 0 1111 223468999999999763 2
Q ss_pred -----HHHHhhCCCCCEEEEcCC
Q 015441 143 -----QEIIKGLPKSLKIVDLSA 160 (406)
Q Consensus 143 -----~~~~~~l~~G~~VIDlSa 160 (406)
.+..+.++.|..+||.|.
T Consensus 189 ~~~i~~~~l~~mk~gailin~sr 211 (303)
T 1qp8_A 189 RGLVKYQHLALMAEDAVFVNVGR 211 (303)
T ss_dssp TTCBCHHHHTTSCTTCEEEECSC
T ss_pred HHHhCHHHHhhCCCCCEEEECCC
Confidence 234445677999999875
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.014 Score=56.54 Aligned_cols=93 Identities=10% Similarity=0.150 Sum_probs=54.1
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCC---CceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHP---YFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp---~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
++||+||| .|.+|..+.+.|.+.. ..++... +++....++.... .. + +...... .+...++|+||+|++.
T Consensus 22 ~mkI~iIG-~G~mG~ala~~L~~~G~~~~~~V~v~-~r~~~~~~~~~l~-~~-G--~~~~~~~-~e~~~~aDvVilav~~ 94 (322)
T 2izz_A 22 SMSVGFIG-AGQLAFALAKGFTAAGVLAAHKIMAS-SPDMDLATVSALR-KM-G--VKLTPHN-KETVQHSDVLFLAVKP 94 (322)
T ss_dssp CCCEEEES-CSHHHHHHHHHHHHTTSSCGGGEEEE-CSCTTSHHHHHHH-HH-T--CEEESCH-HHHHHHCSEEEECSCG
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCCCcceEEEE-CCCccHHHHHHHH-Hc-C--CEEeCCh-HHHhccCCEEEEEeCH
Confidence 35899999 7999999999887543 2455443 4332111111110 00 1 1101010 1223578999999997
Q ss_pred cchHHHHhh----CCCCCEEEEcCCcc
Q 015441 140 GTTQEIIKG----LPKSLKIVDLSADF 162 (406)
Q Consensus 140 ~~s~~~~~~----l~~G~~VIDlSa~f 162 (406)
....+.++. +..+..|||+++..
T Consensus 95 ~~~~~vl~~l~~~l~~~~ivvs~s~gi 121 (322)
T 2izz_A 95 HIIPFILDEIGADIEDRHIVVSCAAGV 121 (322)
T ss_dssp GGHHHHHHHHGGGCCTTCEEEECCTTC
T ss_pred HHHHHHHHHHHhhcCCCCEEEEeCCCC
Confidence 766665543 34578999997654
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.036 Score=53.42 Aligned_cols=82 Identities=20% Similarity=0.254 Sum_probs=51.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc-h
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT-T 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~-s 142 (406)
.+|+|+| .|.+|+.+.+.|..+ .+++..+. ++.. .... .....++ ++.+.++|+|++|+|... +
T Consensus 123 ~tvGIIG-lG~IG~~vA~~l~~~-G~~V~~~d-r~~~--~~~~---------~~~~~~l-~ell~~aDiV~l~~P~t~~t 187 (290)
T 3gvx_A 123 KALGILG-YGGIGRRVAHLAKAF-GMRVIAYT-RSSV--DQNV---------DVISESP-ADLFRQSDFVLIAIPLTDKT 187 (290)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHH-TCEEEEEC-SSCC--CTTC---------SEECSSH-HHHHHHCSEEEECCCCCTTT
T ss_pred chheeec-cCchhHHHHHHHHhh-CcEEEEEe-cccc--cccc---------ccccCCh-HHHhhccCeEEEEeeccccc
Confidence 5899999 999999999999865 35776653 2211 1110 0001111 223467999999999432 2
Q ss_pred -----HHHHhhCCCCCEEEEcCC
Q 015441 143 -----QEIIKGLPKSLKIVDLSA 160 (406)
Q Consensus 143 -----~~~~~~l~~G~~VIDlSa 160 (406)
.+..+.++.|..+||.|.
T Consensus 188 ~~li~~~~l~~mk~gailIN~aR 210 (290)
T 3gvx_A 188 RGMVNSRLLANARKNLTIVNVAR 210 (290)
T ss_dssp TTCBSHHHHTTCCTTCEEEECSC
T ss_pred hhhhhHHHHhhhhcCceEEEeeh
Confidence 344455677999998874
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.85 E-value=0.031 Score=53.44 Aligned_cols=33 Identities=21% Similarity=0.391 Sum_probs=26.9
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
++++|.|.||||++|+.|++.|++.. .+++.+.
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~ 36 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHG-YDVVIAD 36 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEC
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCC-CcEEEEe
Confidence 44689999999999999999998763 5666654
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.034 Score=53.23 Aligned_cols=32 Identities=22% Similarity=0.444 Sum_probs=26.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCC------ceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPY------FGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~------~elv~l~ 95 (406)
++|.|.||||++|+.|++.|.+... .+++.+.
T Consensus 15 ~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~ 52 (342)
T 2hrz_A 15 MHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLID 52 (342)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEE
Confidence 5899999999999999999986542 5666654
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.036 Score=54.69 Aligned_cols=85 Identities=15% Similarity=0.278 Sum_probs=52.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc---
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG--- 140 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~--- 140 (406)
.+|+|+| .|.+|+.+.+.|..+ .+++.+.. +......... + ......+ ++.+.++|+|++++|..
T Consensus 174 ktvGIIG-lG~IG~~vA~~l~~~-G~~V~~~d-r~~~~~~~~~------g--~~~~~~l-~ell~~sDvV~l~~Plt~~T 241 (345)
T 4g2n_A 174 RRLGIFG-MGRIGRAIATRARGF-GLAIHYHN-RTRLSHALEE------G--AIYHDTL-DSLLGASDIFLIAAPGRPEL 241 (345)
T ss_dssp CEEEEES-CSHHHHHHHHHHHTT-TCEEEEEC-SSCCCHHHHT------T--CEECSSH-HHHHHTCSEEEECSCCCGGG
T ss_pred CEEEEEE-eChhHHHHHHHHHHC-CCEEEEEC-CCCcchhhhc------C--CeEeCCH-HHHHhhCCEEEEecCCCHHH
Confidence 5799999 999999999999876 36766553 3221110000 1 0001111 22346899999999953
Q ss_pred ---chHHHHhhCCCCCEEEEcCC
Q 015441 141 ---TTQEIIKGLPKSLKIVDLSA 160 (406)
Q Consensus 141 ---~s~~~~~~l~~G~~VIDlSa 160 (406)
+..+..+.++.|..+||.|-
T Consensus 242 ~~li~~~~l~~mk~gailIN~aR 264 (345)
T 4g2n_A 242 KGFLDHDRIAKIPEGAVVINISR 264 (345)
T ss_dssp TTCBCHHHHHHSCTTEEEEECSC
T ss_pred HHHhCHHHHhhCCCCcEEEECCC
Confidence 22444555678999998763
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.023 Score=54.22 Aligned_cols=32 Identities=13% Similarity=0.417 Sum_probs=26.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCC-CceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHP-YFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp-~~elv~l~ 95 (406)
+||.|.||||++|+.|++.|.+.. ..+++.+.
T Consensus 4 m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~ 36 (336)
T 2hun_A 4 MKLLVTGGMGFIGSNFIRYILEKHPDWEVINID 36 (336)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CeEEEECCCchHHHHHHHHHHHhCCCCEEEEEe
Confidence 479999999999999999888643 46777764
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.028 Score=51.87 Aligned_cols=29 Identities=34% Similarity=0.435 Sum_probs=24.8
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
||.|.||||++|+.+++.|.+ ..+++.+.
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~--g~~V~~~~ 30 (273)
T 2ggs_A 2 RTLITGASGQLGIELSRLLSE--RHEVIKVY 30 (273)
T ss_dssp CEEEETTTSHHHHHHHHHHTT--TSCEEEEE
T ss_pred EEEEECCCChhHHHHHHHHhc--CCeEEEec
Confidence 799999999999999999985 36777665
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.022 Score=55.13 Aligned_cols=92 Identities=11% Similarity=0.154 Sum_probs=52.7
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
..++|+|+| +|..|+.+++.|.....++.+.+.++... -+.+...+ .. .+.....+ .+...++|+||+|+|..
T Consensus 134 ~~~~igiIG-~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~---~~-~~~~~~~~-~e~v~~aDiVi~atp~~ 207 (312)
T 2i99_A 134 SSEVLCILG-AGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTV---QG-EVRVCSSV-QEAVAGADVIITVTLAT 207 (312)
T ss_dssp TCCEEEEEC-CSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHS---SS-CCEECSSH-HHHHTTCSEEEECCCCS
T ss_pred CCcEEEEEC-CcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHh---hC-CeEEeCCH-HHHHhcCCEEEEEeCCC
Confidence 346899999 89999999998876423434455554321 11111111 00 01111111 12246799999999963
Q ss_pred chHHHH--hhCCCCCEEEEcCCc
Q 015441 141 TTQEII--KGLPKSLKIVDLSAD 161 (406)
Q Consensus 141 ~s~~~~--~~l~~G~~VIDlSa~ 161 (406)
..+. +.+..|..|+|.++.
T Consensus 208 --~~v~~~~~l~~g~~vi~~g~~ 228 (312)
T 2i99_A 208 --EPILFGEWVKPGAHINAVGAS 228 (312)
T ss_dssp --SCCBCGGGSCTTCEEEECCCC
T ss_pred --CcccCHHHcCCCcEEEeCCCC
Confidence 2333 345778999998664
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.055 Score=53.37 Aligned_cols=83 Identities=17% Similarity=0.228 Sum_probs=52.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc---
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG--- 140 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~--- 140 (406)
.+|+|+| .|.+|+.+.+.|..+ .+++.+.. ++. ...... . . ....+ ++.+.++|+|++|+|..
T Consensus 149 ktvgIiG-lG~IG~~vA~~l~~~-G~~V~~~d-~~~-~~~~~~------~--~-~~~~l-~ell~~aDvV~l~~Plt~~t 214 (343)
T 2yq5_A 149 LTVGLIG-VGHIGSAVAEIFSAM-GAKVIAYD-VAY-NPEFEP------F--L-TYTDF-DTVLKEADIVSLHTPLFPST 214 (343)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEC-SSC-CGGGTT------T--C-EECCH-HHHHHHCSEEEECCCCCTTT
T ss_pred CeEEEEe-cCHHHHHHHHHHhhC-CCEEEEEC-CCh-hhhhhc------c--c-cccCH-HHHHhcCCEEEEcCCCCHHH
Confidence 5799999 999999999999876 46766554 221 111110 0 0 01111 22346799999999953
Q ss_pred ---chHHHHhhCCCCCEEEEcCC
Q 015441 141 ---TTQEIIKGLPKSLKIVDLSA 160 (406)
Q Consensus 141 ---~s~~~~~~l~~G~~VIDlSa 160 (406)
+..+....++.|..+||.|.
T Consensus 215 ~~li~~~~l~~mk~gailIN~aR 237 (343)
T 2yq5_A 215 ENMIGEKQLKEMKKSAYLINCAR 237 (343)
T ss_dssp TTCBCHHHHHHSCTTCEEEECSC
T ss_pred HHHhhHHHHhhCCCCcEEEECCC
Confidence 22444555678999998774
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.013 Score=56.49 Aligned_cols=90 Identities=18% Similarity=0.272 Sum_probs=52.2
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
+++||+|+| .|.+|+.+.+.|.+.. .++... +++.. +... +........... .+...++|+||+|+|...
T Consensus 8 ~~~~IgiIG-~G~mG~~~A~~l~~~G-~~V~~~-dr~~~--~~~~----~~~~g~~~~~~~-~e~~~~aDvVi~~vp~~~ 77 (306)
T 3l6d_A 8 FEFDVSVIG-LGAMGTIMAQVLLKQG-KRVAIW-NRSPG--KAAA----LVAAGAHLCESV-KAALSASPATIFVLLDNH 77 (306)
T ss_dssp CSCSEEEEC-CSHHHHHHHHHHHHTT-CCEEEE-CSSHH--HHHH----HHHHTCEECSSH-HHHHHHSSEEEECCSSHH
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCC-CEEEEE-eCCHH--HHHH----HHHCCCeecCCH-HHHHhcCCEEEEEeCCHH
Confidence 456899999 9999999999988653 355444 33221 1111 000001001111 122357899999999764
Q ss_pred -hHHHHh--h---CCCCCEEEEcCCc
Q 015441 142 -TQEIIK--G---LPKSLKIVDLSAD 161 (406)
Q Consensus 142 -s~~~~~--~---l~~G~~VIDlSa~ 161 (406)
..+.+. . +..|..|||.|+.
T Consensus 78 ~~~~v~~~~~l~~~~~g~ivid~st~ 103 (306)
T 3l6d_A 78 ATHEVLGMPGVARALAHRTIVDYTTN 103 (306)
T ss_dssp HHHHHHTSTTHHHHTTTCEEEECCCC
T ss_pred HHHHHhcccchhhccCCCEEEECCCC
Confidence 333332 1 3468899999875
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=94.65 E-value=0.018 Score=56.34 Aligned_cols=87 Identities=14% Similarity=0.219 Sum_probs=52.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
++|+|+| .|.+|+.+.+.|.... .+++. .+++. .+..... ....+. ..+. .+.+.++|+||+|+|.....
T Consensus 17 ~~I~IIG-~G~mG~alA~~L~~~G-~~V~~-~~~~~-~~~~~~a----~~~G~~-~~~~-~e~~~~aDvVilavp~~~~~ 86 (338)
T 1np3_A 17 KKVAIIG-YGSQGHAHACNLKDSG-VDVTV-GLRSG-SATVAKA----EAHGLK-VADV-KTAVAAADVVMILTPDEFQG 86 (338)
T ss_dssp SCEEEEC-CSHHHHHHHHHHHHTT-CCEEE-ECCTT-CHHHHHH----HHTTCE-EECH-HHHHHTCSEEEECSCHHHHH
T ss_pred CEEEEEC-chHHHHHHHHHHHHCc-CEEEE-EECCh-HHHHHHH----HHCCCE-EccH-HHHHhcCCEEEEeCCcHHHH
Confidence 5799999 8999999999998653 45543 33322 1111110 000111 1111 12245799999999987776
Q ss_pred HHHh-h----CCCCCEEEEcCC
Q 015441 144 EIIK-G----LPKSLKIVDLSA 160 (406)
Q Consensus 144 ~~~~-~----l~~G~~VIDlSa 160 (406)
++++ . +..|+.|||.++
T Consensus 87 ~v~~~~i~~~l~~~~ivi~~~g 108 (338)
T 1np3_A 87 RLYKEEIEPNLKKGATLAFAHG 108 (338)
T ss_dssp HHHHHHTGGGCCTTCEEEESCC
T ss_pred HHHHHHHHhhCCCCCEEEEcCC
Confidence 6655 3 346888999876
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.051 Score=54.14 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=26.9
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+++|.|.||||++|+.|++.|.+. ..+++.+.
T Consensus 68 ~~~~vlVTGatG~iG~~l~~~L~~~-g~~V~~~~ 100 (427)
T 4f6c_A 68 PLGNTLLTGATGFLGAYLIEALQGY-SHRIYCFI 100 (427)
T ss_dssp CCEEEEEECTTSHHHHHHHHHHTTT-EEEEEEEE
T ss_pred CCCEEEEecCCcHHHHHHHHHHHcC-CCEEEEEE
Confidence 3468999999999999999999654 45777665
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.047 Score=52.10 Aligned_cols=32 Identities=25% Similarity=0.483 Sum_probs=26.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcC--CC---ceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANH--PY---FGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~h--p~---~elv~l~ 95 (406)
|||.|.||||++|+.|++.|.+. +. .+++.+.
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~ 37 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLD 37 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEE
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEE
Confidence 37999999999999999988863 34 6777775
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=94.60 E-value=0.026 Score=54.71 Aligned_cols=31 Identities=32% Similarity=0.663 Sum_probs=24.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCC-ceEEEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPY-FGIKLM 94 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~-~elv~l 94 (406)
+||+|+||+|++|..|+..|...+. .|++.+
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~ 32 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLI 32 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEE
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEE
Confidence 4899999999999999998886544 346555
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=94.59 E-value=0.037 Score=54.74 Aligned_cols=86 Identities=16% Similarity=0.211 Sum_probs=53.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCcc-ccccccCccccCCCcccccCcccCCCCCEEEEcCCCc--
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQS-IGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG-- 140 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~-i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~-- 140 (406)
.+|+|+| .|.+|+.+++.|..+ .+++... ++...... ... + + .....++ ++.+.++|+|++|+|..
T Consensus 165 ktvGIIG-~G~IG~~vA~~l~~~-G~~V~~~-dr~~~~~~~~~~----~-g--~~~~~~l-~ell~~aDvV~l~~Plt~~ 233 (351)
T 3jtm_A 165 KTIGTVG-AGRIGKLLLQRLKPF-GCNLLYH-DRLQMAPELEKE----T-G--AKFVEDL-NEMLPKCDVIVINMPLTEK 233 (351)
T ss_dssp CEEEEEC-CSHHHHHHHHHHGGG-CCEEEEE-CSSCCCHHHHHH----H-C--CEECSCH-HHHGGGCSEEEECSCCCTT
T ss_pred CEEeEEE-eCHHHHHHHHHHHHC-CCEEEEe-CCCccCHHHHHh----C-C--CeEcCCH-HHHHhcCCEEEECCCCCHH
Confidence 5899999 999999999999866 3565544 33221110 000 0 0 0001111 22346899999999953
Q ss_pred ----chHHHHhhCCCCCEEEEcCC
Q 015441 141 ----TTQEIIKGLPKSLKIVDLSA 160 (406)
Q Consensus 141 ----~s~~~~~~l~~G~~VIDlSa 160 (406)
+..+..+.++.|..+||.+-
T Consensus 234 t~~li~~~~l~~mk~gailIN~aR 257 (351)
T 3jtm_A 234 TRGMFNKELIGKLKKGVLIVNNAR 257 (351)
T ss_dssp TTTCBSHHHHHHSCTTEEEEECSC
T ss_pred HHHhhcHHHHhcCCCCCEEEECcC
Confidence 23455566778999998764
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.024 Score=54.61 Aligned_cols=32 Identities=19% Similarity=0.411 Sum_probs=26.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|||.|.||||++|+.|++.|++.+..+++.+.
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~~g~~V~~~~ 32 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNID 32 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEE
T ss_pred CEEEEECCCchHhHHHHHHHHhcCCCeEEEEe
Confidence 37999999999999999999875456777765
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.12 Score=49.68 Aligned_cols=108 Identities=16% Similarity=0.188 Sum_probs=59.0
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC------Cccccc-cccCccccCCCcccccCcccC-CCCCEE
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA------GQSIGS-VFPHLISQDLPTMVAVKDADF-SNVDAV 133 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~------G~~i~~-v~p~l~~~~~~~~~~~~~~~~-~~vDvV 133 (406)
|++||+|+| .|.+|..+...|.... .++..+. ++.. |..+.. .++.+.-..+... .+.++. .++|+|
T Consensus 1 M~mkI~IiG-aGaiG~~~a~~L~~~g-~~V~~~~-r~~~~~i~~~Gl~~~~~~~g~~~~~~~~~~--~~~~~~~~~~DlV 75 (320)
T 3i83_A 1 MSLNILVIG-TGAIGSFYGALLAKTG-HCVSVVS-RSDYETVKAKGIRIRSATLGDYTFRPAAVV--RSAAELETKPDCT 75 (320)
T ss_dssp --CEEEEES-CCHHHHHHHHHHHHTT-CEEEEEC-STTHHHHHHHCEEEEETTTCCEEECCSCEE--SCGGGCSSCCSEE
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHhCC-CeEEEEe-CChHHHHHhCCcEEeecCCCcEEEeeeeeE--CCHHHcCCCCCEE
Confidence 457999999 8999999999998643 3665554 3321 111111 1111110011111 122333 378999
Q ss_pred EEcCCCcchHHHHhh----CCCCCEEEEcCCcccCCCccchhhhcCC
Q 015441 134 FCCLPHGTTQEIIKG----LPKSLKIVDLSADFRLRDVSEYEEWYGQ 176 (406)
Q Consensus 134 F~al~~~~s~~~~~~----l~~G~~VIDlSa~fRl~~~~~~~~~y~~ 176 (406)
|+|++.....+.++. +..+..||.+..-+. ..+.++++++.
T Consensus 76 ilavK~~~~~~~l~~l~~~l~~~t~Iv~~~nGi~--~~~~l~~~~~~ 120 (320)
T 3i83_A 76 LLCIKVVEGADRVGLLRDAVAPDTGIVLISNGID--IEPEVAAAFPD 120 (320)
T ss_dssp EECCCCCTTCCHHHHHTTSCCTTCEEEEECSSSS--CSHHHHHHSTT
T ss_pred EEecCCCChHHHHHHHHhhcCCCCEEEEeCCCCC--hHHHHHHHCCC
Confidence 999998776555543 345677887665442 22344555443
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.058 Score=46.14 Aligned_cols=79 Identities=16% Similarity=0.237 Sum_probs=42.3
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCcccc-cc-ccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIG-SV-FPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~-~v-~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
..+|+|+| .|.+|+.+++.|.... .+++.+..+...-..+. .. ...+.+ +......+....+.++|+||.|++..
T Consensus 19 ~~~v~IiG-~G~iG~~la~~L~~~g-~~V~vid~~~~~~~~~~~~~g~~~~~~-d~~~~~~l~~~~~~~ad~Vi~~~~~~ 95 (155)
T 2g1u_A 19 SKYIVIFG-CGRLGSLIANLASSSG-HSVVVVDKNEYAFHRLNSEFSGFTVVG-DAAEFETLKECGMEKADMVFAFTNDD 95 (155)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEESCGGGGGGSCTTCCSEEEES-CTTSHHHHHTTTGGGCSEEEECSSCH
T ss_pred CCcEEEEC-CCHHHHHHHHHHHhCC-CeEEEEECCHHHHHHHHhcCCCcEEEe-cCCCHHHHHHcCcccCCEEEEEeCCc
Confidence 35899999 5999999999998654 46666543221111111 00 000001 11001111111245789999999976
Q ss_pred chHH
Q 015441 141 TTQE 144 (406)
Q Consensus 141 ~s~~ 144 (406)
....
T Consensus 96 ~~~~ 99 (155)
T 2g1u_A 96 STNF 99 (155)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.058 Score=50.40 Aligned_cols=95 Identities=16% Similarity=0.166 Sum_probs=53.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCC-cccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLP-TMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~-~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
+||+|+| .|.+|..+...|.+.. .++..+..+...-..+..... .+..+. .+...+.+...++|+||+|++....
T Consensus 1 m~i~iiG-~G~~G~~~a~~l~~~g-~~V~~~~r~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~d~vi~~v~~~~~ 76 (291)
T 1ks9_A 1 MKITVLG-CGALGQLWLTALCKQG-HEVQGWLRVPQPYCSVNLVET--DGSIFNESLTANDPDFLATSDLLLVTLKAWQV 76 (291)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSSCCSEEEEEEECT--TSCEEEEEEEESCHHHHHTCSEEEECSCGGGH
T ss_pred CeEEEEC-cCHHHHHHHHHHHhCC-CCEEEEEcCccceeeEEEEcC--CCceeeeeeeecCccccCCCCEEEEEecHHhH
Confidence 3899999 5999999999998643 366555322111111111100 010000 0011112233579999999998876
Q ss_pred HHHHhh----CCCCCEEEEcCCcc
Q 015441 143 QEIIKG----LPKSLKIVDLSADF 162 (406)
Q Consensus 143 ~~~~~~----l~~G~~VIDlSa~f 162 (406)
.+.++. +..+..|||++...
T Consensus 77 ~~v~~~l~~~l~~~~~vv~~~~g~ 100 (291)
T 1ks9_A 77 SDAVKSLASTLPVTTPILLIHNGM 100 (291)
T ss_dssp HHHHHHHHTTSCTTSCEEEECSSS
T ss_pred HHHHHHHHhhCCCCCEEEEecCCC
Confidence 665543 34577889987654
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.017 Score=47.86 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=23.8
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+.+|+|+|+ |.+|+.+++.|.... .+++.+.
T Consensus 6 ~~~v~I~G~-G~iG~~~a~~l~~~g-~~v~~~d 36 (144)
T 2hmt_A 6 NKQFAVIGL-GRFGGSIVKELHRMG-HEVLAVD 36 (144)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTT-CCCEEEE
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCC-CEEEEEe
Confidence 347999997 999999999998653 4555543
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=94.50 E-value=0.015 Score=57.53 Aligned_cols=97 Identities=11% Similarity=0.107 Sum_probs=53.8
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
..+|+|+| +|..|+..++.|......+.+.+.++... .+.+...+....+......... .+...++|+|++|++...
T Consensus 129 ~~~v~iIG-aG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~-~eav~~aDiVi~aTps~~ 206 (350)
T 1x7d_A 129 ARKMALIG-NGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSV-AEAVKGVDIITTVTADKA 206 (350)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSH-HHHHTTCSEEEECCCCSS
T ss_pred CCeEEEEC-CcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCH-HHHHhcCCEEEEeccCCC
Confidence 46899999 79999999887754223555556654321 1111111110001001001111 223468999999999863
Q ss_pred hHHHH--hhCCCCCEEEEcCCc
Q 015441 142 TQEII--KGLPKSLKIVDLSAD 161 (406)
Q Consensus 142 s~~~~--~~l~~G~~VIDlSa~ 161 (406)
...+. ..+..|..|++.++.
T Consensus 207 ~~pvl~~~~l~~G~~V~~vgs~ 228 (350)
T 1x7d_A 207 YATIITPDMLEPGMHLNAVGGD 228 (350)
T ss_dssp EEEEECGGGCCTTCEEEECSCC
T ss_pred CCceecHHHcCCCCEEEECCCC
Confidence 22232 245779999988774
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.47 E-value=0.05 Score=56.25 Aligned_cols=94 Identities=16% Similarity=0.186 Sum_probs=53.8
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-Cccccc-cccCccccCCCcccccCccc----CCCCCEEE
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGS-VFPHLISQDLPTMVAVKDAD----FSNVDAVF 134 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~-v~p~l~~~~~~~~~~~~~~~----~~~vDvVF 134 (406)
+|..+|+|+| .|.+|..|.+.|.++- +++... +++.. -+.+.. .++ +..+.... +..+ +.++|+||
T Consensus 8 ~~~~~IgvIG-lG~MG~~lA~~La~~G-~~V~v~-dr~~~~~~~l~~~~~~---~~gi~~~~--s~~e~v~~l~~aDvVi 79 (497)
T 2p4q_A 8 HMSADFGLIG-LAVMGQNLILNAADHG-FTVCAY-NRTQSKVDHFLANEAK---GKSIIGAT--SIEDFISKLKRPRKVM 79 (497)
T ss_dssp -CCCSEEEEC-CSHHHHHHHHHHHHTT-CCEEEE-CSSSHHHHHHHHTTTT---TSSEECCS--SHHHHHHTSCSSCEEE
T ss_pred cCCCCEEEEe-eHHHHHHHHHHHHHCC-CEEEEE-eCCHHHHHHHHccccc---CCCeEEeC--CHHHHHhcCCCCCEEE
Confidence 5667899999 9999999999998653 355444 33221 011111 000 00110011 1111 22489999
Q ss_pred EcCCCc-chHHHH----hhCCCCCEEEEcCCcc
Q 015441 135 CCLPHG-TTQEII----KGLPKSLKIVDLSADF 162 (406)
Q Consensus 135 ~al~~~-~s~~~~----~~l~~G~~VIDlSa~f 162 (406)
+|+|.+ ...+.+ +.+..|..|||.|...
T Consensus 80 l~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~~~ 112 (497)
T 2p4q_A 80 LLVKAGAPVDALINQIVPLLEKGDIIIDGGNSH 112 (497)
T ss_dssp ECCCSSHHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred EEcCChHHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence 999986 334433 3356788999998754
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.42 E-value=0.047 Score=50.61 Aligned_cols=83 Identities=14% Similarity=0.301 Sum_probs=48.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCC---ceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPY---FGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~---~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
+||+|+| .|.+|+.+.+.|.+... .++.. .+++. .+ + + +...... .+...++|+||+|++..
T Consensus 5 m~i~iiG-~G~mG~~~a~~l~~~g~~~~~~v~~-~~~~~-~~-----~----g--~~~~~~~-~~~~~~~D~vi~~v~~~ 69 (262)
T 2rcy_A 5 IKLGFMG-LGQMGSALAHGIANANIIKKENLFY-YGPSK-KN-----T----T--LNYMSSN-EELARHCDIIVCAVKPD 69 (262)
T ss_dssp SCEEEEC-CSHHHHHHHHHHHHHTSSCGGGEEE-ECSSC-CS-----S----S--SEECSCH-HHHHHHCSEEEECSCTT
T ss_pred CEEEEEC-cCHHHHHHHHHHHHCCCCCCCeEEE-EeCCc-cc-----C----c--eEEeCCH-HHHHhcCCEEEEEeCHH
Confidence 5899999 69999999998875331 35544 34332 11 1 1 1000011 12234789999999987
Q ss_pred chHHHHhhCC---CCCEEEEcCCc
Q 015441 141 TTQEIIKGLP---KSLKIVDLSAD 161 (406)
Q Consensus 141 ~s~~~~~~l~---~G~~VIDlSa~ 161 (406)
...+.++.+. .+..||...+.
T Consensus 70 ~~~~v~~~l~~~l~~~~vv~~~~g 93 (262)
T 2rcy_A 70 IAGSVLNNIKPYLSSKLLISICGG 93 (262)
T ss_dssp THHHHHHHSGGGCTTCEEEECCSS
T ss_pred HHHHHHHHHHHhcCCCEEEEECCC
Confidence 7766665432 34445544443
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.022 Score=56.31 Aligned_cols=99 Identities=17% Similarity=0.336 Sum_probs=53.4
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCC------CceEEEEeccCcC--C-cccccc---c--c-CccccCCCc-ccc-cCc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHP------YFGIKLMTADRKA--G-QSIGSV---F--P-HLISQDLPT-MVA-VKD 124 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp------~~elv~l~s~~~~--G-~~i~~v---~--p-~l~~~~~~~-~~~-~~~ 124 (406)
||+||+|+| +|.+|..+...|.+.- ..++..+ +++.. + +..... . + .+.+..++. +.. .+.
T Consensus 20 ~~~kI~iIG-aG~mG~alA~~L~~~G~~~~~~~~~V~~~-~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 97 (375)
T 1yj8_A 20 GPLKISILG-SGNWASAISKVVGTNAKNNYLFENEVRMW-IRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDL 97 (375)
T ss_dssp SCBCEEEEC-CSHHHHHHHHHHHHHHHHCTTBCSCEEEE-CCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESST
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHHcCCccCCCCCeEEEE-ECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCH
Confidence 457899999 8999999999887421 1345444 33221 0 011110 0 0 001111110 111 111
Q ss_pred -ccCCCCCEEEEcCCCcchHHHHhh--------CCCCCEEEEcCCcc
Q 015441 125 -ADFSNVDAVFCCLPHGTTQEIIKG--------LPKSLKIVDLSADF 162 (406)
Q Consensus 125 -~~~~~vDvVF~al~~~~s~~~~~~--------l~~G~~VIDlSa~f 162 (406)
+...++|+||+|++.....+.++. +..+..|||++.-.
T Consensus 98 ~ea~~~aDvVilav~~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi 144 (375)
T 1yj8_A 98 ASVINDADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTKGF 144 (375)
T ss_dssp HHHHTTCSEEEECCCHHHHHHHHHHHTC---CCCCTTCEEEECCCSC
T ss_pred HHHHcCCCEEEEcCCHHHHHHHHHHHhhhhhccCCCCCEEEEeCCcc
Confidence 224689999999997655555433 23577899988543
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.39 E-value=0.021 Score=47.87 Aligned_cols=77 Identities=16% Similarity=0.168 Sum_probs=40.9
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccc-cccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGS-VFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~-v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
|.+|.|+|+ |++|+.+++.|.+.. .+++.+..+...-+.+.. ....+.+ +......+......++|+||.|+|...
T Consensus 6 ~~~v~I~G~-G~iG~~la~~L~~~g-~~V~~id~~~~~~~~~~~~~~~~~~g-d~~~~~~l~~~~~~~~d~vi~~~~~~~ 82 (141)
T 3llv_A 6 RYEYIVIGS-EAAGVGLVRELTAAG-KKVLAVDKSKEKIELLEDEGFDAVIA-DPTDESFYRSLDLEGVSAVLITGSDDE 82 (141)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTT-CCEEEEESCHHHHHHHHHTTCEEEEC-CTTCHHHHHHSCCTTCSEEEECCSCHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC-CeEEEEECCHHHHHHHHHCCCcEEEC-CCCCHHHHHhCCcccCCEEEEecCCHH
Confidence 458999995 999999999998653 466655432111011110 0000111 111111111112457999999999654
Q ss_pred h
Q 015441 142 T 142 (406)
Q Consensus 142 s 142 (406)
.
T Consensus 83 ~ 83 (141)
T 3llv_A 83 F 83 (141)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=94.37 E-value=0.024 Score=55.17 Aligned_cols=93 Identities=13% Similarity=0.129 Sum_probs=54.6
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
...+|+|+| +|..|+..++.|.....++.+.+.+++.. -+.+...+... +.... .... ++.. ++|+|+.||++.
T Consensus 124 ~~~~v~iIG-aG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~-~~~~~-~~~~-~e~v-~aDvVi~aTp~~ 198 (322)
T 1omo_A 124 NSSVFGFIG-CGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDR-GISAS-VQPA-EEAS-RCDVLVTTTPSR 198 (322)
T ss_dssp TCCEEEEEC-CSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHT-TCCEE-ECCH-HHHT-SSSEEEECCCCS
T ss_pred CCCEEEEEc-CcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhc-CceEE-ECCH-HHHh-CCCEEEEeeCCC
Confidence 346899999 79999999998876334566666665421 11111111000 00111 1111 2335 799999999975
Q ss_pred chHHHH--hhCCCCCEEEEcCCc
Q 015441 141 TTQEII--KGLPKSLKIVDLSAD 161 (406)
Q Consensus 141 ~s~~~~--~~l~~G~~VIDlSa~ 161 (406)
. ... ..++.|..|+|.++.
T Consensus 199 ~--pv~~~~~l~~G~~V~~ig~~ 219 (322)
T 1omo_A 199 K--PVVKAEWVEEGTHINAIGAD 219 (322)
T ss_dssp S--CCBCGGGCCTTCEEEECSCC
T ss_pred C--ceecHHHcCCCeEEEECCCC
Confidence 3 222 345779999998663
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=94.35 E-value=0.026 Score=54.42 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=24.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCC-ceEEEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPY-FGIKLM 94 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~-~elv~l 94 (406)
+||+|+||+|++|..|+..|..... .|++.+
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~ 32 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFV 32 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEE
Confidence 4899999999999999998875443 356555
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.02 Score=55.55 Aligned_cols=31 Identities=35% Similarity=0.566 Sum_probs=25.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCC-ceEEEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPY-FGIKLM 94 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~-~elv~l 94 (406)
+||+|+||+|++|..++..|...+. .+++.+
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~ 32 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLY 32 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEE
Confidence 4899999999999999999987653 355555
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.33 E-value=0.088 Score=51.01 Aligned_cols=81 Identities=14% Similarity=0.232 Sum_probs=51.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc-h
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT-T 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~-s 142 (406)
.+|+|+| .|.+|+.+.+.|..+. +++... ++... +. . . . ...+ ++.+.++|+|++|+|... +
T Consensus 145 ~~vgIIG-~G~IG~~~A~~l~~~G-~~V~~~-d~~~~-~~-~-----~---~---~~~l-~ell~~aDvV~l~~p~~~~t 207 (311)
T 2cuk_A 145 LTLGLVG-MGRIGQAVAKRALAFG-MRVVYH-ARTPK-PL-P-----Y---P---FLSL-EELLKEADVVSLHTPLTPET 207 (311)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTT-CEEEEE-CSSCC-SS-S-----S---C---BCCH-HHHHHHCSEEEECCCCCTTT
T ss_pred CEEEEEE-ECHHHHHHHHHHHHCC-CEEEEE-CCCCc-cc-c-----c---c---cCCH-HHHHhhCCEEEEeCCCChHH
Confidence 5799999 9999999999998664 566544 33221 10 0 0 0 1111 122357899999998763 2
Q ss_pred H-----HHHhhCCCCCEEEEcCCc
Q 015441 143 Q-----EIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 143 ~-----~~~~~l~~G~~VIDlSa~ 161 (406)
. +..+.++.|..+||.|..
T Consensus 208 ~~li~~~~l~~mk~ga~lin~srg 231 (311)
T 2cuk_A 208 HRLLNRERLFAMKRGAILLNTARG 231 (311)
T ss_dssp TTCBCHHHHTTSCTTCEEEECSCG
T ss_pred HhhcCHHHHhhCCCCcEEEECCCC
Confidence 2 334445678999988763
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.027 Score=53.93 Aligned_cols=33 Identities=21% Similarity=0.404 Sum_probs=25.7
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
++.+|.|.||+|++|+.|++.|++.. .+++.+.
T Consensus 4 ~~~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~ 36 (337)
T 2c29_D 4 QSETVCVTGASGFIGSWLVMRLLERG-YTVRATV 36 (337)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCC-CEEEEEE
Confidence 44689999999999999999988653 4666554
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.021 Score=55.11 Aligned_cols=88 Identities=15% Similarity=0.184 Sum_probs=51.9
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
|.||++|| .|..|.-+.+.|.+.- ++++.. +++. .-+.+.. .+ ....... .+...++|+||.|++...
T Consensus 3 M~kIgfIG-lG~MG~~mA~~L~~~G-~~v~v~-dr~~~~~~~l~~-----~G--a~~a~s~-~e~~~~~dvv~~~l~~~~ 71 (300)
T 3obb_A 3 MKQIAFIG-LGHMGAPMATNLLKAG-YLLNVF-DLVQSAVDGLVA-----AG--ASAARSA-RDAVQGADVVISMLPASQ 71 (300)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHTT-CEEEEE-CSSHHHHHHHHH-----TT--CEECSSH-HHHHTTCSEEEECCSCHH
T ss_pred cCEEEEee-ehHHHHHHHHHHHhCC-CeEEEE-cCCHHHHHHHHH-----cC--CEEcCCH-HHHHhcCCceeecCCchH
Confidence 56999999 9999999999888642 355444 3321 1111111 01 0001111 122368999999999877
Q ss_pred hHHHH-h-------hCCCCCEEEEcCCc
Q 015441 142 TQEII-K-------GLPKSLKIVDLSAD 161 (406)
Q Consensus 142 s~~~~-~-------~l~~G~~VIDlSa~ 161 (406)
..+-+ . .+.+|..|||.|..
T Consensus 72 ~v~~V~~~~~g~~~~~~~g~iiId~sT~ 99 (300)
T 3obb_A 72 HVEGLYLDDDGLLAHIAPGTLVLECSTI 99 (300)
T ss_dssp HHHHHHHSSSSSTTSCCC-CEEEECSCC
T ss_pred HHHHHHhchhhhhhcCCCCCEEEECCCC
Confidence 64422 1 12458899999885
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.013 Score=57.85 Aligned_cols=91 Identities=11% Similarity=0.185 Sum_probs=53.2
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccC----CCCCEEEEc
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADF----SNVDAVFCC 136 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~----~~vDvVF~a 136 (406)
++..||+|+| .|.+|+.+.+.|.... .++... +++.. ...... .+ + .....+. .+.+ .++|+||+|
T Consensus 6 ~~~~kIgIIG-~G~mG~slA~~L~~~G-~~V~~~-dr~~~--~~~~a~-~~-G--~~~~~~~-~e~~~~a~~~aDlVila 75 (341)
T 3ktd_A 6 DISRPVCILG-LGLIGGSLLRDLHAAN-HSVFGY-NRSRS--GAKSAV-DE-G--FDVSADL-EATLQRAAAEDALIVLA 75 (341)
T ss_dssp CCSSCEEEEC-CSHHHHHHHHHHHHTT-CCEEEE-CSCHH--HHHHHH-HT-T--CCEESCH-HHHHHHHHHTTCEEEEC
T ss_pred CCCCEEEEEe-ecHHHHHHHHHHHHCC-CEEEEE-eCCHH--HHHHHH-Hc-C--CeeeCCH-HHHHHhcccCCCEEEEe
Confidence 3446899999 8999999999998653 455544 33221 111100 00 1 0001111 1111 257999999
Q ss_pred CCCcchHHHHhh---CCCCCEEEEcCCc
Q 015441 137 LPHGTTQEIIKG---LPKSLKIVDLSAD 161 (406)
Q Consensus 137 l~~~~s~~~~~~---l~~G~~VIDlSa~ 161 (406)
+|.....+.++. +..|+.|+|.++.
T Consensus 76 vP~~~~~~vl~~l~~~~~~~iv~Dv~Sv 103 (341)
T 3ktd_A 76 VPMTAIDSLLDAVHTHAPNNGFTDVVSV 103 (341)
T ss_dssp SCHHHHHHHHHHHHHHCTTCCEEECCSC
T ss_pred CCHHHHHHHHHHHHccCCCCEEEEcCCC
Confidence 997766555543 2468899999875
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.061 Score=55.04 Aligned_cols=34 Identities=24% Similarity=0.244 Sum_probs=27.4
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
..+++|.|.||||++|+.|++.|.. ...+++++.
T Consensus 148 ~~~~~VLVTGatG~iG~~l~~~L~~-~g~~V~~l~ 181 (508)
T 4f6l_B 148 RPLGNTLLTGATGFLGAYLIEALQG-YSHRIYCFI 181 (508)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHTBT-TEEEEEEEE
T ss_pred CCCCeEEEECCccchHHHHHHHHHh-cCCEEEEEE
Confidence 3457899999999999999999954 346777775
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=94.23 E-value=0.058 Score=55.64 Aligned_cols=95 Identities=13% Similarity=0.138 Sum_probs=53.5
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccC--cccCCCCCEEEEcCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVK--DADFSNVDAVFCCLPH 139 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~--~~~~~~vDvVF~al~~ 139 (406)
|++|+|+| .|.+|..|.+.|.++- +++... +++.. -+.+.... ..+..+.....+. ...+.++|+||+|+|.
T Consensus 4 ~~kIgiIG-lG~MG~~lA~~L~~~G-~~V~v~-dr~~~~~~~l~~~g--~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~ 78 (484)
T 4gwg_A 4 QADIALIG-LAVMGQNLILNMNDHG-FVVCAF-NRTVSKVDDFLANE--AKGTKVVGAQSLKEMVSKLKKPRRIILLVKA 78 (484)
T ss_dssp CBSEEEEC-CSHHHHHHHHHHHHTT-CCEEEE-CSSTHHHHHHHHTT--TTTSSCEECSSHHHHHHTBCSSCEEEECSCS
T ss_pred CCEEEEEC-hhHHHHHHHHHHHHCC-CEEEEE-eCCHHHHHHHHhcc--cCCCceeccCCHHHHHhhccCCCEEEEecCC
Confidence 46899999 8999999999998764 355544 33221 01111000 0010110001110 0112368999999998
Q ss_pred cc-hHHH----HhhCCCCCEEEEcCCcc
Q 015441 140 GT-TQEI----IKGLPKSLKIVDLSADF 162 (406)
Q Consensus 140 ~~-s~~~----~~~l~~G~~VIDlSa~f 162 (406)
+. ..+. .+.+..|..|||.|...
T Consensus 79 ~~~v~~vl~~l~~~L~~g~iIId~st~~ 106 (484)
T 4gwg_A 79 GQAVDDFIEKLVPLLDTGDIIIDGGNSE 106 (484)
T ss_dssp SHHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence 73 3333 34456789999998764
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.06 Score=52.86 Aligned_cols=85 Identities=12% Similarity=0.198 Sum_probs=52.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.+|+|+| .|.+|+.+.+.|..+. +++..+. ++. .+..... + +.. ..++ ++.+.++|+|++|+|....
T Consensus 166 ~tvgIIG-lG~IG~~vA~~l~~~G-~~V~~~d-~~~-~~~~~~~---~-g~~---~~~l-~ell~~aDvV~l~~P~t~~t 233 (335)
T 2g76_A 166 KTLGILG-LGRIGREVATRMQSFG-MKTIGYD-PII-SPEVSAS---F-GVQ---QLPL-EEIWPLCDFITVHTPLLPST 233 (335)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHTTT-CEEEEEC-SSS-CHHHHHH---T-TCE---ECCH-HHHGGGCSEEEECCCCCTTT
T ss_pred CEEEEEe-ECHHHHHHHHHHHHCC-CEEEEEC-CCc-chhhhhh---c-Cce---eCCH-HHHHhcCCEEEEecCCCHHH
Confidence 5799999 9999999999998764 6765553 221 1110000 0 101 1111 2234689999999997642
Q ss_pred -----HHHHhhCCCCCEEEEcCC
Q 015441 143 -----QEIIKGLPKSLKIVDLSA 160 (406)
Q Consensus 143 -----~~~~~~l~~G~~VIDlSa 160 (406)
.+..+.++.|..+||.|.
T Consensus 234 ~~li~~~~l~~mk~gailIN~ar 256 (335)
T 2g76_A 234 TGLLNDNTFAQCKKGVRVVNCAR 256 (335)
T ss_dssp TTSBCHHHHTTSCTTEEEEECSC
T ss_pred HHhhCHHHHhhCCCCcEEEECCC
Confidence 334445677899998875
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.22 E-value=0.054 Score=53.87 Aligned_cols=85 Identities=15% Similarity=0.261 Sum_probs=52.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.+|+|+| .|.+|+.+.+.|..+ .+++.+.. +......... .+.. ...+ ++.+.++|+|++++|....
T Consensus 177 ktvGIIG-lG~IG~~vA~~l~~f-G~~V~~~d-~~~~~~~~~~-----~g~~---~~~l-~ell~~aDvV~l~~Plt~~T 244 (365)
T 4hy3_A 177 SEIGIVG-FGDLGKALRRVLSGF-RARIRVFD-PWLPRSMLEE-----NGVE---PASL-EDVLTKSDFIFVVAAVTSEN 244 (365)
T ss_dssp SEEEEEC-CSHHHHHHHHHHTTS-CCEEEEEC-SSSCHHHHHH-----TTCE---ECCH-HHHHHSCSEEEECSCSSCC-
T ss_pred CEEEEec-CCcccHHHHHhhhhC-CCEEEEEC-CCCCHHHHhh-----cCee---eCCH-HHHHhcCCEEEEcCcCCHHH
Confidence 5899999 999999999999866 36766553 3211000000 0100 1111 2234689999999996532
Q ss_pred -----HHHHhhCCCCCEEEEcCC
Q 015441 143 -----QEIIKGLPKSLKIVDLSA 160 (406)
Q Consensus 143 -----~~~~~~l~~G~~VIDlSa 160 (406)
.+....++.|..+||.|-
T Consensus 245 ~~li~~~~l~~mk~gailIN~aR 267 (365)
T 4hy3_A 245 KRFLGAEAFSSMRRGAAFILLSR 267 (365)
T ss_dssp --CCCHHHHHTSCTTCEEEECSC
T ss_pred HhhcCHHHHhcCCCCcEEEECcC
Confidence 344455678999998763
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.032 Score=52.09 Aligned_cols=69 Identities=10% Similarity=0.251 Sum_probs=48.3
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
++||+|+| .|.+|..|.+.|.+.. .+++.+... ++..++| |+|+|....
T Consensus 6 ~mkI~IIG-~G~~G~sLA~~L~~~G-~~V~~~~~~---------------------------~~~~~aD--ilavP~~ai 54 (232)
T 3dfu_A 6 RLRVGIFD-DGSSTVNMAEKLDSVG-HYVTVLHAP---------------------------EDIRDFE--LVVIDAHGV 54 (232)
T ss_dssp CCEEEEEC-CSCCCSCHHHHHHHTT-CEEEECSSG---------------------------GGGGGCS--EEEECSSCH
T ss_pred CcEEEEEe-eCHHHHHHHHHHHHCC-CEEEEecCH---------------------------HHhccCC--EEEEcHHHH
Confidence 46999999 8999999999998653 355544320 0123467 888888766
Q ss_pred HHHHhh----CCCCCEEEEcCCcc
Q 015441 143 QEIIKG----LPKSLKIVDLSADF 162 (406)
Q Consensus 143 ~~~~~~----l~~G~~VIDlSa~f 162 (406)
.+.++. +..|..|||.|+..
T Consensus 55 ~~vl~~l~~~l~~g~ivvd~sgs~ 78 (232)
T 3dfu_A 55 EGYVEKLSAFARRGQMFLHTSLTH 78 (232)
T ss_dssp HHHHHHHHTTCCTTCEEEECCSSC
T ss_pred HHHHHHHHHhcCCCCEEEEECCcC
Confidence 665543 35688999998764
|
| >1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 | Back alignment and structure |
|---|
Probab=94.21 E-value=0.058 Score=50.18 Aligned_cols=69 Identities=16% Similarity=0.208 Sum_probs=51.1
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
-+|-.|+||+|..|+.+.++. ..+.+++++..++.. + .++.++|+++..+-+..+
T Consensus 12 ~~~~~v~Ga~GrMG~~i~~~~-~~~~~elv~~id~~~---------------~---------~~l~~~DVvIDFT~P~a~ 66 (228)
T 1vm6_A 12 HMKYGIVGYSGRMGQEIQKVF-SEKGHELVLKVDVNG---------------V---------EELDSPDVVIDFSSPEAL 66 (228)
T ss_dssp CCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEEETTE---------------E---------EECSCCSEEEECSCGGGH
T ss_pred cceeEEEEecCHHHHHHHHHH-hCCCCEEEEEEcCCC---------------c---------ccccCCCEEEECCCHHHH
Confidence 468999999999999998865 567889988875421 0 112357999977777777
Q ss_pred HHHHhhC-CCCCEEE
Q 015441 143 QEIIKGL-PKSLKIV 156 (406)
Q Consensus 143 ~~~~~~l-~~G~~VI 156 (406)
.+.++.+ +.|+.+|
T Consensus 67 ~~~~~~~~~~g~~~V 81 (228)
T 1vm6_A 67 PKTVDLCKKYRAGLV 81 (228)
T ss_dssp HHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHcCCCEE
Confidence 7877764 6788655
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.036 Score=54.75 Aligned_cols=98 Identities=17% Similarity=0.209 Sum_probs=55.3
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-Cccccccc--c-CccccCCCc-ccc-cCc-ccCCCCCEEE
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVF--P-HLISQDLPT-MVA-VKD-ADFSNVDAVF 134 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~--p-~l~~~~~~~-~~~-~~~-~~~~~vDvVF 134 (406)
+++||+|+| .|.+|..+...|.+.- .++... +++.. -+.+...+ + .+.+..++. +.. .+. +...++|+||
T Consensus 28 ~~mkI~VIG-aG~mG~alA~~La~~G-~~V~l~-~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVi 104 (356)
T 3k96_A 28 FKHPIAILG-AGSWGTALALVLARKG-QKVRLW-SYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDIL 104 (356)
T ss_dssp CCSCEEEEC-CSHHHHHHHHHHHTTT-CCEEEE-CSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEE
T ss_pred cCCeEEEEC-ccHHHHHHHHHHHHCC-CeEEEE-eCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEE
Confidence 457999999 7999999999998643 344444 33211 01111100 0 011111111 111 111 2346899999
Q ss_pred EcCCCcchHHHHhh----CCCCCEEEEcCCcc
Q 015441 135 CCLPHGTTQEIIKG----LPKSLKIVDLSADF 162 (406)
Q Consensus 135 ~al~~~~s~~~~~~----l~~G~~VIDlSa~f 162 (406)
+|+|.....+.++. +..+..||+++.-+
T Consensus 105 laVp~~~~~~vl~~i~~~l~~~~ivvs~~kGi 136 (356)
T 3k96_A 105 IVVPSFAFHEVITRMKPLIDAKTRIAWGTKGL 136 (356)
T ss_dssp ECCCHHHHHHHHHHHGGGCCTTCEEEECCCSC
T ss_pred ECCCHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 99998765555543 45678899887644
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=94.14 E-value=0.046 Score=52.91 Aligned_cols=94 Identities=13% Similarity=0.069 Sum_probs=52.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-Ccccccccc-CccccCCC---cc--cccCc-ccCCCCCEEEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFP-HLISQDLP---TM--VAVKD-ADFSNVDAVFC 135 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p-~l~~~~~~---~~--~~~~~-~~~~~vDvVF~ 135 (406)
+||+|+| .|.+|..+...|.... .++..+ +++.. -+.+..... .+.+.... .+ ...+. +.+.++|+||.
T Consensus 5 mki~iiG-~G~~G~~~a~~L~~~g-~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~ 81 (359)
T 1bg6_A 5 KTYAVLG-LGNGGHAFAAYLALKG-QSVLAW-DIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILI 81 (359)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTT-CEEEEE-CSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEE
T ss_pred CeEEEEC-CCHHHHHHHHHHHhCC-CEEEEE-eCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEE
Confidence 6999999 6999999999988653 455544 33211 011111000 00000000 00 01111 12468999999
Q ss_pred cCCCcchHHHHhh----CCCCCEEEEcCC
Q 015441 136 CLPHGTTQEIIKG----LPKSLKIVDLSA 160 (406)
Q Consensus 136 al~~~~s~~~~~~----l~~G~~VIDlSa 160 (406)
|++.....+.++. +..+..||+..+
T Consensus 82 ~v~~~~~~~~~~~l~~~l~~~~~vv~~~~ 110 (359)
T 1bg6_A 82 VVPAIHHASIAANIASYISEGQLIILNPG 110 (359)
T ss_dssp CSCGGGHHHHHHHHGGGCCTTCEEEESSC
T ss_pred eCCchHHHHHHHHHHHhCCCCCEEEEcCC
Confidence 9998877665543 456788888755
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=94.09 E-value=0.066 Score=51.11 Aligned_cols=89 Identities=15% Similarity=0.307 Sum_probs=53.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.+|+|+| .|.+|+.+++.|..+. +++.... ++.. +..... .+ +........+ ++.+.++|+|+.|+|...-
T Consensus 156 ~~v~IiG-~G~iG~~~a~~l~~~G-~~V~~~d-r~~~--~~~~~~-~~-g~~~~~~~~l-~~~l~~aDvVi~~~p~~~i~ 227 (293)
T 3d4o_A 156 ANVAVLG-LGRVGMSVARKFAALG-AKVKVGA-RESD--LLARIA-EM-GMEPFHISKA-AQELRDVDVCINTIPALVVT 227 (293)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEE-SSHH--HHHHHH-HT-TSEEEEGGGH-HHHTTTCSEEEECCSSCCBC
T ss_pred CEEEEEe-eCHHHHHHHHHHHhCC-CEEEEEE-CCHH--HHHHHH-HC-CCeecChhhH-HHHhcCCCEEEECCChHHhC
Confidence 5899999 8999999999998765 4665543 3211 111000 01 1000001111 2234689999999997553
Q ss_pred HHHHhhCCCCCEEEEcCC
Q 015441 143 QEIIKGLPKSLKIVDLSA 160 (406)
Q Consensus 143 ~~~~~~l~~G~~VIDlSa 160 (406)
.+....++.|..+||.+.
T Consensus 228 ~~~l~~mk~~~~lin~ar 245 (293)
T 3d4o_A 228 ANVLAEMPSHTFVIDLAS 245 (293)
T ss_dssp HHHHHHSCTTCEEEECSS
T ss_pred HHHHHhcCCCCEEEEecC
Confidence 444556677899999874
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.08 E-value=0.043 Score=52.13 Aligned_cols=103 Identities=16% Similarity=0.171 Sum_probs=59.4
Q ss_pred ccEEEEECcccHHHHHHHHHHHcC--CCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANH--PYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~h--p~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
++||+|+| .|.+|+.+++.|.+. +..++. +.+++.. +.......+ .+....+. .+...++|+||+|++..
T Consensus 3 ~~~I~iIG-~G~mG~aia~~l~~~g~~~~~V~-v~dr~~~--~~~~l~~~~---gi~~~~~~-~~~~~~aDvVilav~p~ 74 (280)
T 3tri_A 3 TSNITFIG-GGNMARNIVVGLIANGYDPNRIC-VTNRSLD--KLDFFKEKC---GVHTTQDN-RQGALNADVVVLAVKPH 74 (280)
T ss_dssp CSCEEEES-CSHHHHHHHHHHHHTTCCGGGEE-EECSSSH--HHHHHHHTT---CCEEESCH-HHHHSSCSEEEECSCGG
T ss_pred CCEEEEEc-ccHHHHHHHHHHHHCCCCCCeEE-EEeCCHH--HHHHHHHHc---CCEEeCCh-HHHHhcCCeEEEEeCHH
Confidence 36899999 699999999988854 323554 4443321 111110000 11111111 22346899999999887
Q ss_pred chHHHHhh-----CCCCCEEEEcCCcccCCCccchhhhcCC
Q 015441 141 TTQEIIKG-----LPKSLKIVDLSADFRLRDVSEYEEWYGQ 176 (406)
Q Consensus 141 ~s~~~~~~-----l~~G~~VIDlSa~fRl~~~~~~~~~y~~ 176 (406)
...+.++. +..+..||++++.... +..++|.+.
T Consensus 75 ~~~~vl~~l~~~~l~~~~iiiS~~agi~~---~~l~~~l~~ 112 (280)
T 3tri_A 75 QIKMVCEELKDILSETKILVISLAVGVTT---PLIEKWLGK 112 (280)
T ss_dssp GHHHHHHHHHHHHHTTTCEEEECCTTCCH---HHHHHHHTC
T ss_pred HHHHHHHHHHhhccCCCeEEEEecCCCCH---HHHHHHcCC
Confidence 66665543 3456688887776543 445667654
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.029 Score=55.38 Aligned_cols=32 Identities=28% Similarity=0.564 Sum_probs=25.6
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCC------ceEEEE
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPY------FGIKLM 94 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~------~elv~l 94 (406)
.+||+|+||+|.||+.|+-+|...+- .||+.+
T Consensus 24 ~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~ 61 (345)
T 4h7p_A 24 AVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLL 61 (345)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEE
T ss_pred CCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEE
Confidence 47999999999999999998876443 356555
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=94.07 E-value=0.074 Score=51.67 Aligned_cols=74 Identities=19% Similarity=0.340 Sum_probs=41.1
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccCc---CCcc--ccccccCccccCCCcccccCcccCCCCCEEEE
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRK---AGQS--IGSVFPHLISQDLPTMVAVKDADFSNVDAVFC 135 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~~---~G~~--i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~ 135 (406)
+++||+|+|| |++|..++-.|.....+ |++.+ +... .|.. +....+.+ .+.. +..-+.+++.++|+||.
T Consensus 6 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~-Di~~~~~~g~~~dl~~~~~~~--~~~~-i~~~~~~a~~~aDvVii 80 (318)
T 1y6j_A 6 SRSKVAIIGA-GFVGASAAFTMALRQTANELVLI-DVFKEKAIGEAMDINHGLPFM--GQMS-LYAGDYSDVKDCDVIVV 80 (318)
T ss_dssp -CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEE-CCC---CCHHHHHHTTSCCCT--TCEE-EC--CGGGGTTCSEEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEE-eCChHHHHHHHHHHHHhHHhc--CCeE-EEECCHHHhCCCCEEEE
Confidence 3579999997 99999999988865543 55555 3221 1211 11111111 1111 11112445789999999
Q ss_pred cCCCc
Q 015441 136 CLPHG 140 (406)
Q Consensus 136 al~~~ 140 (406)
+.+..
T Consensus 81 ~~g~p 85 (318)
T 1y6j_A 81 TAGAN 85 (318)
T ss_dssp CCCC-
T ss_pred cCCCC
Confidence 98753
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=94.04 E-value=0.091 Score=48.98 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=25.6
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEec
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA 96 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s 96 (406)
|+||.|.| +|++|+.|++.|.+.. .+++.+..
T Consensus 3 ~~~ilVtG-aG~iG~~l~~~L~~~g-~~V~~~~r 34 (286)
T 3gpi_A 3 LSKILIAG-CGDLGLELARRLTAQG-HEVTGLRR 34 (286)
T ss_dssp CCCEEEEC-CSHHHHHHHHHHHHTT-CCEEEEEC
T ss_pred CCcEEEEC-CCHHHHHHHHHHHHCC-CEEEEEeC
Confidence 35899999 5999999999998753 47777753
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=94.04 E-value=0.038 Score=52.29 Aligned_cols=34 Identities=15% Similarity=0.274 Sum_probs=26.3
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.++++|.|.||||++|+.|++.|.+.. .+++.+.
T Consensus 10 ~~~~~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~ 43 (321)
T 2pk3_A 10 HGSMRALITGVAGFVGKYLANHLTEQN-VEVFGTS 43 (321)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred cCcceEEEECCCChHHHHHHHHHHHCC-CEEEEEe
Confidence 345789999999999999999998754 4777664
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=94.00 E-value=0.065 Score=52.85 Aligned_cols=86 Identities=12% Similarity=0.173 Sum_probs=52.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc-h
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT-T 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~-s 142 (406)
.+|+|+| .|.+|+.+.+.|..+. +++... ++... +..... + +.. ....+ ++.+.++|+|++|+|... +
T Consensus 169 ~tvGIIG-~G~IG~~vA~~l~~~G-~~V~~~-d~~~~-~~~~~~---~-g~~--~~~~l-~ell~~aDvV~l~~P~t~~t 237 (347)
T 1mx3_A 169 ETLGIIG-LGRVGQAVALRAKAFG-FNVLFY-DPYLS-DGVERA---L-GLQ--RVSTL-QDLLFHSDCVTLHCGLNEHN 237 (347)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHTTT-CEEEEE-CTTSC-TTHHHH---H-TCE--ECSSH-HHHHHHCSEEEECCCCCTTC
T ss_pred CEEEEEe-ECHHHHHHHHHHHHCC-CEEEEE-CCCcc-hhhHhh---c-CCe--ecCCH-HHHHhcCCEEEEcCCCCHHH
Confidence 5799999 9999999999998764 576554 33221 111100 0 100 01111 122357899999998642 2
Q ss_pred -----HHHHhhCCCCCEEEEcCC
Q 015441 143 -----QEIIKGLPKSLKIVDLSA 160 (406)
Q Consensus 143 -----~~~~~~l~~G~~VIDlSa 160 (406)
.+..+.++.|..+||.|.
T Consensus 238 ~~li~~~~l~~mk~gailIN~ar 260 (347)
T 1mx3_A 238 HHLINDFTVKQMRQGAFLVNTAR 260 (347)
T ss_dssp TTSBSHHHHTTSCTTEEEEECSC
T ss_pred HHHhHHHHHhcCCCCCEEEECCC
Confidence 334445567889998764
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=94.00 E-value=0.095 Score=51.35 Aligned_cols=83 Identities=19% Similarity=0.244 Sum_probs=51.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc-h
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT-T 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~-s 142 (406)
.+|+|+| .|.+|+.+.+.|..+. +++... +++.. + .. + .....++ ++.+.++|+|++|+|... +
T Consensus 165 ~~vgIIG-~G~iG~~vA~~l~~~G-~~V~~~-dr~~~-~-~~-------g--~~~~~~l-~ell~~aDvVil~vP~~~~t 229 (333)
T 3ba1_A 165 KRVGIIG-LGRIGLAVAERAEAFD-CPISYF-SRSKK-P-NT-------N--YTYYGSV-VELASNSDILVVACPLTPET 229 (333)
T ss_dssp CCEEEEC-CSHHHHHHHHHHHTTT-CCEEEE-CSSCC-T-TC-------C--SEEESCH-HHHHHTCSEEEECSCCCGGG
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCC-CEEEEE-CCCch-h-cc-------C--ceecCCH-HHHHhcCCEEEEecCCChHH
Confidence 4799999 8999999999998653 566544 33221 1 00 0 0001111 122468999999999753 3
Q ss_pred H-----HHHhhCCCCCEEEEcCCc
Q 015441 143 Q-----EIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 143 ~-----~~~~~l~~G~~VIDlSa~ 161 (406)
+ +..+.++.|..+||.|.-
T Consensus 230 ~~li~~~~l~~mk~gailIn~srG 253 (333)
T 3ba1_A 230 THIINREVIDALGPKGVLINIGRG 253 (333)
T ss_dssp TTCBCHHHHHHHCTTCEEEECSCG
T ss_pred HHHhhHHHHhcCCCCCEEEECCCC
Confidence 2 333445678899987754
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=93.94 E-value=0.033 Score=57.29 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=24.2
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEE
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l 94 (406)
.+||+|+| +||+|..+...|++.- .+++.+
T Consensus 8 ~~~I~VIG-~G~vG~~lA~~la~~G-~~V~~~ 37 (478)
T 2y0c_A 8 SMNLTIIG-SGSVGLVTGACLADIG-HDVFCL 37 (478)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEE
T ss_pred CceEEEEC-cCHHHHHHHHHHHhCC-CEEEEE
Confidence 47999999 9999999999998643 355555
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=93.93 E-value=0.073 Score=50.93 Aligned_cols=89 Identities=18% Similarity=0.279 Sum_probs=53.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.+|+|+| .|.+|+.+++.|..+. +++..+. ++.. +..... .+ +........+ ++.+.++|+|+.|+|...-
T Consensus 158 ~~v~IiG-~G~iG~~~a~~l~~~G-~~V~~~d-~~~~--~~~~~~-~~-g~~~~~~~~l-~~~l~~aDvVi~~~p~~~i~ 229 (300)
T 2rir_A 158 SQVAVLG-LGRTGMTIARTFAALG-ANVKVGA-RSSA--HLARIT-EM-GLVPFHTDEL-KEHVKDIDICINTIPSMILN 229 (300)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEE-SSHH--HHHHHH-HT-TCEEEEGGGH-HHHSTTCSEEEECCSSCCBC
T ss_pred CEEEEEc-ccHHHHHHHHHHHHCC-CEEEEEE-CCHH--HHHHHH-HC-CCeEEchhhH-HHHhhCCCEEEECCChhhhC
Confidence 5899999 7999999999998765 4665553 3221 111000 00 1000001111 2235689999999997543
Q ss_pred HHHHhhCCCCCEEEEcCC
Q 015441 143 QEIIKGLPKSLKIVDLSA 160 (406)
Q Consensus 143 ~~~~~~l~~G~~VIDlSa 160 (406)
.+....++.|..+||.+.
T Consensus 230 ~~~~~~mk~g~~lin~a~ 247 (300)
T 2rir_A 230 QTVLSSMTPKTLILDLAS 247 (300)
T ss_dssp HHHHTTSCTTCEEEECSS
T ss_pred HHHHHhCCCCCEEEEEeC
Confidence 344455677899999875
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=93.92 E-value=0.039 Score=47.20 Aligned_cols=79 Identities=13% Similarity=0.113 Sum_probs=48.3
Q ss_pred ccEEEEECcc---cHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 63 QVRIGLLGAS---GYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 63 ~ikVaIvGAT---G~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
..+|+|+||| |..|..+++.|.++. +++..++-+ ..++.+. + .+.+..+ .+.-..+|+++.|+|.
T Consensus 13 p~~vaVvGas~~~g~~G~~~~~~l~~~G-~~v~~vnp~-~~~~~i~-------G--~~~~~sl-~el~~~vDlavi~vp~ 80 (140)
T 1iuk_A 13 AKTIAVLGAHKDPSRPAHYVPRYLREQG-YRVLPVNPR-FQGEELF-------G--EEAVASL-LDLKEPVDILDVFRPP 80 (140)
T ss_dssp CCEEEEETCCSSTTSHHHHHHHHHHHTT-CEEEEECGG-GTTSEET-------T--EECBSSG-GGCCSCCSEEEECSCH
T ss_pred CCEEEEECCCCCCCChHHHHHHHHHHCC-CEEEEeCCC-cccCcCC-------C--EEecCCH-HHCCCCCCEEEEEeCH
Confidence 3579999998 899999999888654 465555432 2233321 1 1111111 1111368999999998
Q ss_pred cchHHHHhhC-CCCC
Q 015441 140 GTTQEIIKGL-PKSL 153 (406)
Q Consensus 140 ~~s~~~~~~l-~~G~ 153 (406)
....+.+..+ ++|+
T Consensus 81 ~~~~~v~~~~~~~gi 95 (140)
T 1iuk_A 81 SALMDHLPEVLALRP 95 (140)
T ss_dssp HHHTTTHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCC
Confidence 7777766543 4444
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=93.88 E-value=0.034 Score=54.99 Aligned_cols=86 Identities=14% Similarity=0.157 Sum_probs=52.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc-h
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT-T 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~-s 142 (406)
.+|+|+| .|.+|+.+.+.|..+. +++..+. ++..-..... .+ ......+ ++.+.++|+|++|+|... +
T Consensus 161 ~tvGIIG-lG~IG~~vA~~l~~~G-~~V~~~d-~~~~~~~~~~-----~g--~~~~~~l-~ell~~aDiV~l~~Plt~~t 229 (352)
T 3gg9_A 161 QTLGIFG-YGKIGQLVAGYGRAFG-MNVLVWG-RENSKERARA-----DG--FAVAESK-DALFEQSDVLSVHLRLNDET 229 (352)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEC-SHHHHHHHHH-----TT--CEECSSH-HHHHHHCSEEEECCCCSTTT
T ss_pred CEEEEEe-ECHHHHHHHHHHHhCC-CEEEEEC-CCCCHHHHHh-----cC--ceEeCCH-HHHHhhCCEEEEeccCcHHH
Confidence 5899999 9999999999998763 6776653 2210000000 01 0001111 223467999999998543 2
Q ss_pred -----HHHHhhCCCCCEEEEcCC
Q 015441 143 -----QEIIKGLPKSLKIVDLSA 160 (406)
Q Consensus 143 -----~~~~~~l~~G~~VIDlSa 160 (406)
.+..+.++.|..+||.|.
T Consensus 230 ~~li~~~~l~~mk~gailIN~aR 252 (352)
T 3gg9_A 230 RSIITVADLTRMKPTALFVNTSR 252 (352)
T ss_dssp TTCBCHHHHTTSCTTCEEEECSC
T ss_pred HHhhCHHHHhhCCCCcEEEECCC
Confidence 344455677999998874
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=93.86 E-value=0.047 Score=53.02 Aligned_cols=98 Identities=17% Similarity=0.263 Sum_probs=54.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCC------CceEEEEeccCcC------Cccccccc--cC-ccccCCCc-ccc-cCc-c
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHP------YFGIKLMTADRKA------GQSIGSVF--PH-LISQDLPT-MVA-VKD-A 125 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp------~~elv~l~s~~~~------G~~i~~v~--p~-l~~~~~~~-~~~-~~~-~ 125 (406)
+||+|+| .|.+|..+...|.... ..++..+ +++.. .+.+...+ +. +.+..++. +.. .+. +
T Consensus 9 mkI~iIG-~G~mG~~~a~~l~~~g~~~~~~~~~V~~~-~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (354)
T 1x0v_A 9 KKVCIVG-SGNWGSAIAKIVGGNAAQLAQFDPRVTMW-VFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQ 86 (354)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHHHHHHCTTEEEEEEEE-CCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHH
T ss_pred CeEEEEC-CCHHHHHHHHHHHhcCCcccCCCCeEEEE-EcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHH
Confidence 5899999 8999999999887432 1355444 33221 11111100 00 00111110 111 111 2
Q ss_pred cCCCCCEEEEcCCCcchHHHHhh----CCCCCEEEEcCCccc
Q 015441 126 DFSNVDAVFCCLPHGTTQEIIKG----LPKSLKIVDLSADFR 163 (406)
Q Consensus 126 ~~~~vDvVF~al~~~~s~~~~~~----l~~G~~VIDlSa~fR 163 (406)
...++|+||+|++.....+.++. +..+..|||++.-.-
T Consensus 87 ~~~~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~~~~Gi~ 128 (354)
T 1x0v_A 87 AAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVD 128 (354)
T ss_dssp HHTTCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEECCCCBC
T ss_pred HHcCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEEECCccC
Confidence 24689999999998766665543 345788999886543
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=93.84 E-value=0.028 Score=53.10 Aligned_cols=31 Identities=29% Similarity=0.307 Sum_probs=25.5
Q ss_pred EEEEECcccHHHHHHHHHHHcC-CCceEEEEe
Q 015441 65 RIGLLGASGYTGAEIVRLLANH-PYFGIKLMT 95 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~h-p~~elv~l~ 95 (406)
||.|.||||++|+.|++.|.+. +..+++.+.
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~ 32 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASD 32 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEE
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 5899999999999999988865 446776664
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=93.81 E-value=0.052 Score=52.85 Aligned_cols=87 Identities=18% Similarity=0.247 Sum_probs=52.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc-h
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT-T 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~-s 142 (406)
.+|+|+| .|.+|+.+++.|..+. +++..+. +.+....... .+ + .....++ ++.+.++|+|++|+|... +
T Consensus 147 ~~vgIIG-~G~IG~~~A~~l~~~G-~~V~~~d-~~~~~~~~~~---~~-g--~~~~~~l-~ell~~aDvVil~~p~~~~t 216 (320)
T 1gdh_A 147 KTLGIYG-FGSIGQALAKRAQGFD-MDIDYFD-THRASSSDEA---SY-Q--ATFHDSL-DSLLSVSQFFSLNAPSTPET 216 (320)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHTTT-CEEEEEC-SSCCCHHHHH---HH-T--CEECSSH-HHHHHHCSEEEECCCCCTTT
T ss_pred CEEEEEC-cCHHHHHHHHHHHHCC-CEEEEEC-CCCcChhhhh---hc-C--cEEcCCH-HHHHhhCCEEEEeccCchHH
Confidence 5799999 9999999999998764 6765553 3011111000 00 1 0001011 122357899999999653 2
Q ss_pred -----HHHHhhCCCCCEEEEcCC
Q 015441 143 -----QEIIKGLPKSLKIVDLSA 160 (406)
Q Consensus 143 -----~~~~~~l~~G~~VIDlSa 160 (406)
.+..+.++.|..+||.+.
T Consensus 217 ~~~i~~~~l~~mk~gailIn~ar 239 (320)
T 1gdh_A 217 RYFFNKATIKSLPQGAIVVNTAR 239 (320)
T ss_dssp TTCBSHHHHTTSCTTEEEEECSC
T ss_pred HhhcCHHHHhhCCCCcEEEECCC
Confidence 233445667889998875
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.018 Score=54.89 Aligned_cols=97 Identities=15% Similarity=0.242 Sum_probs=54.5
Q ss_pred ccCCccEEEEECcccHHHHHHHHHHHcC-----CCceEEEEeccCc--------CCccccccccCcccc--CCCcccc-c
Q 015441 59 KSEKQVRIGLLGASGYTGAEIVRLLANH-----PYFGIKLMTADRK--------AGQSIGSVFPHLISQ--DLPTMVA-V 122 (406)
Q Consensus 59 ~~~~~ikVaIvGATG~vG~eLlrlL~~h-----p~~elv~l~s~~~--------~G~~i~~v~p~l~~~--~~~~~~~-~ 122 (406)
++++++||+|+| .|.+|..+...|.+. ...++..+. +.. .|..+.. ..+. ..+ +.. .
T Consensus 4 m~~~~m~I~iiG-~G~mG~~~a~~L~~~~~~~~g~~~V~~~~-r~~~~~~l~~~~g~~~~~----~~~~~~~~~-~~~~~ 76 (317)
T 2qyt_A 4 MNQQPIKIAVFG-LGGVGGYYGAMLALRAAATDGLLEVSWIA-RGAHLEAIRAAGGLRVVT----PSRDFLARP-TCVTD 76 (317)
T ss_dssp ---CCEEEEEEC-CSHHHHHHHHHHHHHHHHTTSSEEEEEEC-CHHHHHHHHHHTSEEEEC----SSCEEEECC-SEEES
T ss_pred CCCCCCEEEEEC-cCHHHHHHHHHHHhCccccCCCCCEEEEE-cHHHHHHHHhcCCeEEEe----CCCCeEEec-ceEec
Confidence 445567999999 999999999988754 214665553 321 1111110 0000 000 000 1
Q ss_pred CcccCCCCCEEEEcCCCcchHHHHhhC----CCCCEEEEcCCcc
Q 015441 123 KDADFSNVDAVFCCLPHGTTQEIIKGL----PKSLKIVDLSADF 162 (406)
Q Consensus 123 ~~~~~~~vDvVF~al~~~~s~~~~~~l----~~G~~VIDlSa~f 162 (406)
+.+...++|+||+|++.....+.++.+ ..+..||+++.-.
T Consensus 77 ~~~~~~~~D~vil~vk~~~~~~v~~~i~~~l~~~~~iv~~~nG~ 120 (317)
T 2qyt_A 77 NPAEVGTVDYILFCTKDYDMERGVAEIRPMIGQNTKILPLLNGA 120 (317)
T ss_dssp CHHHHCCEEEEEECCSSSCHHHHHHHHGGGEEEEEEEEECSCSS
T ss_pred CccccCCCCEEEEecCcccHHHHHHHHHhhcCCCCEEEEccCCC
Confidence 112235789999999988776665443 3466788876654
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=93.79 E-value=0.13 Score=52.35 Aligned_cols=97 Identities=22% Similarity=0.268 Sum_probs=53.1
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccc-----cccCccc---c--CCCccc-ccCc-ccCCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGS-----VFPHLIS---Q--DLPTMV-AVKD-ADFSNV 130 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~-----v~p~l~~---~--~~~~~~-~~~~-~~~~~v 130 (406)
..||+|+| +||+|.-+...|++.- .+++.+.-+...=..+.. ..|.+.. . .-..+. ..+. +...++
T Consensus 8 ~~~~~vIG-lG~vG~~~A~~La~~G-~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~a 85 (446)
T 4a7p_A 8 SVRIAMIG-TGYVGLVSGACFSDFG-HEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDA 85 (446)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTC
T ss_pred ceEEEEEc-CCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcC
Confidence 47999999 9999999999998652 466555322111011111 0111110 0 000011 1122 234689
Q ss_pred CEEEEcCCCcc-----------hH----HHHhhCCCCCEEEEcCCc
Q 015441 131 DAVFCCLPHGT-----------TQ----EIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 131 DvVF~al~~~~-----------s~----~~~~~l~~G~~VIDlSa~ 161 (406)
|++|.|.|+.. -. .+.+.+..|..||+.|.-
T Consensus 86 Dvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv 131 (446)
T 4a7p_A 86 DAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTV 131 (446)
T ss_dssp SEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCC
T ss_pred CEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 99999976543 12 223345678899998864
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=93.77 E-value=0.071 Score=51.97 Aligned_cols=85 Identities=15% Similarity=0.262 Sum_probs=51.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-ccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
++|+|+| .|.+|+.+.+.|..+. +++..+. ++... ..... + + .. ...+ ++.+.++|+|++|+|....
T Consensus 156 ~~vgIIG-~G~iG~~iA~~l~~~G-~~V~~~d-~~~~~~~~~~~----~-g--~~-~~~l-~e~l~~aDvVi~~vp~~~~ 223 (330)
T 2gcg_A 156 STVGIIG-LGRIGQAIARRLKPFG-VQRFLYT-GRQPRPEEAAE----F-Q--AE-FVST-PELAAQSDFIVVACSLTPA 223 (330)
T ss_dssp CEEEEEC-CSHHHHHHHHHHGGGT-CCEEEEE-SSSCCHHHHHT----T-T--CE-ECCH-HHHHHHCSEEEECCCCCTT
T ss_pred CEEEEEC-cCHHHHHHHHHHHHCC-CEEEEEC-CCCcchhHHHh----c-C--ce-eCCH-HHHHhhCCEEEEeCCCChH
Confidence 5899999 7999999999998653 4665443 32211 11110 0 1 10 0111 1224578999999986532
Q ss_pred ------HHHHhhCCCCCEEEEcCC
Q 015441 143 ------QEIIKGLPKSLKIVDLSA 160 (406)
Q Consensus 143 ------~~~~~~l~~G~~VIDlSa 160 (406)
.+..+.++.|..+|+.|.
T Consensus 224 t~~~i~~~~~~~mk~gailIn~sr 247 (330)
T 2gcg_A 224 TEGLCNKDFFQKMKETAVFINISR 247 (330)
T ss_dssp TTTCBSHHHHHHSCTTCEEEECSC
T ss_pred HHHhhCHHHHhcCCCCcEEEECCC
Confidence 334455677889998765
|
| >2y1e_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase, DOXP/MEP pathway; 1.65A {Mycobacterium tuberculosis} PDB: 2jcv_A* 2jcz_A* 2jd2_A 2jd1_A 2y1d_A* 2y1c_A 2y1f_A* 2y1g_A* 3ras_A* 4a03_A* 4aic_A* 2jcx_A* 2jcy_A 2jd0_A* 2c82_A | Back alignment and structure |
|---|
Probab=93.76 E-value=0.065 Score=53.38 Aligned_cols=38 Identities=24% Similarity=0.539 Sum_probs=33.7
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCC-ceEEEEec-cCcC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPY-FGIKLMTA-DRKA 100 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~-~elv~l~s-~~~~ 100 (406)
|.||.|+|+||-||.+-++.+.+||+ +++++++. .+..
T Consensus 21 mk~i~ILGSTGSIGtqtLdVi~~~pd~f~V~aLaa~g~nv 60 (398)
T 2y1e_A 21 RLRVVVLGSTGSIGTQALQVIADNPDRFEVVGLAAGGAHL 60 (398)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTTEEEEEEEECSSCH
T ss_pred ceEEEEEccCcHHHHHHHHHHHhCCCceEEEEEEecCCCH
Confidence 57899999999999999999999987 89999987 5543
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=93.74 E-value=0.064 Score=53.65 Aligned_cols=82 Identities=20% Similarity=0.274 Sum_probs=52.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.+|+|+| .|.+|+.+.+.|..+ .+++......+.. ... +.. ...+ ++.+.++|+|++++|....
T Consensus 120 ktvGIIG-lG~IG~~vA~~l~a~-G~~V~~~d~~~~~---~~~------~~~---~~sl-~ell~~aDiV~l~~Plt~~g 184 (381)
T 3oet_A 120 RTIGIVG-VGNVGSRLQTRLEAL-GIRTLLCDPPRAA---RGD------EGD---FRTL-DELVQEADVLTFHTPLYKDG 184 (381)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECHHHHH---TTC------CSC---BCCH-HHHHHHCSEEEECCCCCCSS
T ss_pred CEEEEEe-ECHHHHHHHHHHHHC-CCEEEEECCChHH---hcc------Ccc---cCCH-HHHHhhCCEEEEcCcCCccc
Confidence 5799999 999999999999876 3676655321110 000 001 1111 2234579999999985432
Q ss_pred ---------HHHHhhCCCCCEEEEcCC
Q 015441 143 ---------QEIIKGLPKSLKIVDLSA 160 (406)
Q Consensus 143 ---------~~~~~~l~~G~~VIDlSa 160 (406)
.+....++.|..+||.|-
T Consensus 185 ~~~T~~li~~~~l~~mk~gailIN~aR 211 (381)
T 3oet_A 185 PYKTLHLADETLIRRLKPGAILINACR 211 (381)
T ss_dssp TTCCTTSBCHHHHHHSCTTEEEEECSC
T ss_pred cccchhhcCHHHHhcCCCCcEEEECCC
Confidence 344555678999998764
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=93.73 E-value=0.12 Score=49.69 Aligned_cols=96 Identities=16% Similarity=0.201 Sum_probs=52.9
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc------CCccccccccCccccCCCcccccCcccCCCCCEEEE
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK------AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFC 135 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~------~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~ 135 (406)
|++||+|+| .|.+|..+...|.... .++..+. ++. .|..+...++.+.-..+... .+.+...++|+||+
T Consensus 1 M~mkI~IiG-aGaiG~~~a~~L~~~g-~~V~~~~-r~~~~~i~~~g~~~~~~~g~~~~~~~~~~--~~~~~~~~~D~vil 75 (312)
T 3hn2_A 1 MSLRIAIVG-AGALGLYYGALLQRSG-EDVHFLL-RRDYEAIAGNGLKVFSINGDFTLPHVKGY--RAPEEIGPMDLVLV 75 (312)
T ss_dssp ---CEEEEC-CSTTHHHHHHHHHHTS-CCEEEEC-STTHHHHHHTCEEEEETTCCEEESCCCEE--SCHHHHCCCSEEEE
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHHCC-CeEEEEE-cCcHHHHHhCCCEEEcCCCeEEEeeceee--cCHHHcCCCCEEEE
Confidence 457999999 8999999999998542 3555554 332 12111111111100011101 11223457899999
Q ss_pred cCCCcchHHHHhh----CCCCCEEEEcCCcc
Q 015441 136 CLPHGTTQEIIKG----LPKSLKIVDLSADF 162 (406)
Q Consensus 136 al~~~~s~~~~~~----l~~G~~VIDlSa~f 162 (406)
|++.....+.++. +..+..||.+..-+
T Consensus 76 avk~~~~~~~l~~l~~~l~~~~~iv~l~nGi 106 (312)
T 3hn2_A 76 GLKTFANSRYEELIRPLVEEGTQILTLQNGL 106 (312)
T ss_dssp CCCGGGGGGHHHHHGGGCCTTCEEEECCSSS
T ss_pred ecCCCCcHHHHHHHHhhcCCCCEEEEecCCC
Confidence 9998776665543 44567788766544
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=93.67 E-value=0.042 Score=55.54 Aligned_cols=29 Identities=28% Similarity=0.450 Sum_probs=23.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l 94 (406)
+||+|+| +|++|..+...|.+.. .+++.+
T Consensus 1 mkI~VIG-~G~vG~~~A~~la~~G-~~V~~~ 29 (436)
T 1mv8_A 1 MRISIFG-LGYVGAVCAGCLSARG-HEVIGV 29 (436)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTT-CEEEEE
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCC-CEEEEE
Confidence 3899999 8999999999998653 355554
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=93.62 E-value=0.12 Score=50.56 Aligned_cols=83 Identities=11% Similarity=0.185 Sum_probs=52.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.+|+|+| .|.+|+.+.+.|..+. +++.++. ++.. +.... + . ....+ ++.+.++|+|++|+|....
T Consensus 146 ~~vgIiG-~G~IG~~~A~~l~~~G-~~V~~~d-~~~~-~~~~~----~----~-~~~~l-~ell~~aDvV~~~~P~~~~t 211 (333)
T 1dxy_A 146 QTVGVMG-TGHIGQVAIKLFKGFG-AKVIAYD-PYPM-KGDHP----D----F-DYVSL-EDLFKQSDVIDLHVPGIEQN 211 (333)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEC-SSCC-SSCCT----T----C-EECCH-HHHHHHCSEEEECCCCCGGG
T ss_pred CEEEEEC-cCHHHHHHHHHHHHCC-CEEEEEC-CCcc-hhhHh----c----c-ccCCH-HHHHhcCCEEEEcCCCchhH
Confidence 5799999 9999999999998663 6765553 2221 11110 0 0 01111 2234579999999996542
Q ss_pred -----HHHHhhCCCCCEEEEcCC
Q 015441 143 -----QEIIKGLPKSLKIVDLSA 160 (406)
Q Consensus 143 -----~~~~~~l~~G~~VIDlSa 160 (406)
.+..+.++.|..+||.|.
T Consensus 212 ~~li~~~~l~~mk~ga~lIn~sr 234 (333)
T 1dxy_A 212 THIINEAAFNLMKPGAIVINTAR 234 (333)
T ss_dssp TTSBCHHHHHHSCTTEEEEECSC
T ss_pred HHHhCHHHHhhCCCCcEEEECCC
Confidence 344455678999998764
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.61 E-value=0.036 Score=54.83 Aligned_cols=93 Identities=16% Similarity=0.262 Sum_probs=51.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccC-ccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPH-LISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~-l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
.+|+|+|+ |.+|+.+++.+..... +++.+. ++.. -..+.+.+.. +.. +......+ .+.+.++|+||.|++...
T Consensus 167 ~~V~ViGa-G~iG~~~a~~l~~~Ga-~V~~~d-~~~~~~~~~~~~~g~~~~~-~~~~~~~l-~~~~~~~DvVi~~~g~~~ 241 (369)
T 2eez_A 167 ASVVILGG-GTVGTNAAKIALGMGA-QVTILD-VNHKRLQYLDDVFGGRVIT-LTATEANI-KKSVQHADLLIGAVLVPG 241 (369)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-EEEEEE-SCHHHHHHHHHHTTTSEEE-EECCHHHH-HHHHHHCSEEEECCC---
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-EEEEEE-CCHHHHHHHHHhcCceEEE-ecCCHHHH-HHHHhCCCEEEECCCCCc
Confidence 58999997 9999999999987654 665543 3211 0011110000 000 00000111 112357899999998543
Q ss_pred -------hHHHHhhCCCCCEEEEcCCc
Q 015441 142 -------TQEIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 142 -------s~~~~~~l~~G~~VIDlSa~ 161 (406)
.++..+.+..|.++||.+.+
T Consensus 242 ~~~~~li~~~~l~~mk~gg~iV~v~~~ 268 (369)
T 2eez_A 242 AKAPKLVTRDMLSLMKEGAVIVDVAVD 268 (369)
T ss_dssp ----CCSCHHHHTTSCTTCEEEECC--
T ss_pred cccchhHHHHHHHhhcCCCEEEEEecC
Confidence 45556666778899999865
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=93.61 E-value=0.063 Score=53.37 Aligned_cols=97 Identities=15% Similarity=0.169 Sum_probs=53.3
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEec--cCc---------CCcccccccc-C--cc-ccCCCcccccCc-c
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA--DRK---------AGQSIGSVFP-H--LI-SQDLPTMVAVKD-A 125 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s--~~~---------~G~~i~~v~p-~--l~-~~~~~~~~~~~~-~ 125 (406)
||+||+|+| .|.+|..+...|......++..+.. ++. .|..+...++ . .. ...+... ..+. +
T Consensus 1 ~~mkI~ViG-aG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 78 (404)
T 3c7a_A 1 MTVKVCVCG-GGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVI-TKDPEI 78 (404)
T ss_dssp -CEEEEEEC-CSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEE-ESCHHH
T ss_pred CCceEEEEC-CCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEE-eCCHHH
Confidence 457999999 6999999999997543456665540 210 0100010000 0 00 0001001 1111 2
Q ss_pred cCCCCCEEEEcCCCcchHHHHhh----CCCCCEEEEcCC
Q 015441 126 DFSNVDAVFCCLPHGTTQEIIKG----LPKSLKIVDLSA 160 (406)
Q Consensus 126 ~~~~vDvVF~al~~~~s~~~~~~----l~~G~~VIDlSa 160 (406)
...++|+||+|++.....+.++. +..+..||++.+
T Consensus 79 a~~~aD~Vilav~~~~~~~v~~~l~~~l~~~~ivv~~~~ 117 (404)
T 3c7a_A 79 AISGADVVILTVPAFAHEGYFQAMAPYVQDSALIVGLPS 117 (404)
T ss_dssp HHTTCSEEEECSCGGGHHHHHHHHTTTCCTTCEEEETTC
T ss_pred HhCCCCEEEEeCchHHHHHHHHHHHhhCCCCcEEEEcCC
Confidence 24689999999998877666654 345778888543
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=93.60 E-value=0.12 Score=50.56 Aligned_cols=82 Identities=15% Similarity=0.195 Sum_probs=51.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc-h
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT-T 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~-s 142 (406)
.+|+|+| .|.+|+.+.+.|..+ .+++..+. ++.. +.... + . ....+ ++.+.++|+|++|+|... +
T Consensus 147 ~~vgIiG-~G~IG~~~A~~l~~~-G~~V~~~d-~~~~-~~~~~----~----~-~~~~l-~ell~~aDvV~~~~p~t~~t 212 (331)
T 1xdw_A 147 CTVGVVG-LGRIGRVAAQIFHGM-GATVIGED-VFEI-KGIED----Y----C-TQVSL-DEVLEKSDIITIHAPYIKEN 212 (331)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEC-SSCC-CSCTT----T----C-EECCH-HHHHHHCSEEEECCCCCTTT
T ss_pred CEEEEEC-cCHHHHHHHHHHHHC-CCEEEEEC-CCcc-HHHHh----c----c-ccCCH-HHHHhhCCEEEEecCCchHH
Confidence 5799999 899999999999865 36765543 3221 11110 0 0 01111 123457899999998642 2
Q ss_pred -----HHHHhhCCCCCEEEEcC
Q 015441 143 -----QEIIKGLPKSLKIVDLS 159 (406)
Q Consensus 143 -----~~~~~~l~~G~~VIDlS 159 (406)
.+..+.++.|..+||.|
T Consensus 213 ~~li~~~~l~~mk~ga~lin~s 234 (331)
T 1xdw_A 213 GAVVTRDFLKKMKDGAILVNCA 234 (331)
T ss_dssp CCSBCHHHHHTSCTTEEEEECS
T ss_pred HHHhCHHHHhhCCCCcEEEECC
Confidence 34455567899999887
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=93.58 E-value=0.044 Score=55.91 Aligned_cols=92 Identities=18% Similarity=0.311 Sum_probs=50.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccc--cCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLIS--QDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~--~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
.+|+|+| +|.+|+.+++.|.+.. .+++ +.+++.. .+.+...++.+.. .++.....+ ...+.++|+|+.|+|..
T Consensus 4 k~VlViG-aG~iG~~ia~~L~~~G-~~V~-v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l-~~~l~~~DvVIn~a~~~ 79 (450)
T 1ff9_A 4 KSVLMLG-SGFVTRPTLDVLTDSG-IKVT-VACRTLESAKKLSAGVQHSTPISLDVNDDAAL-DAEVAKHDLVISLIPYT 79 (450)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHTTT-CEEE-EEESSHHHHHHTTTTCTTEEEEECCTTCHHHH-HHHHTTSSEEEECCC--
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCc-CEEE-EEECCHHHHHHHHHhcCCceEEEeecCCHHHH-HHHHcCCcEEEECCccc
Confidence 5899999 8999999999998644 5644 4444321 1111111110000 011111111 11235899999999976
Q ss_pred chHHHHhh-CCCCCEEEEcC
Q 015441 141 TTQEIIKG-LPKSLKIVDLS 159 (406)
Q Consensus 141 ~s~~~~~~-l~~G~~VIDlS 159 (406)
....+... +.+|..|+|.+
T Consensus 80 ~~~~i~~a~l~~g~~vvd~~ 99 (450)
T 1ff9_A 80 FHATVIKSAIRQKKHVVTTS 99 (450)
T ss_dssp CHHHHHHHHHHHTCEEEESS
T ss_pred cchHHHHHHHhCCCeEEEee
Confidence 55444443 45678888874
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=93.57 E-value=0.041 Score=56.14 Aligned_cols=35 Identities=20% Similarity=0.174 Sum_probs=28.7
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCC--CceEEEEe
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHP--YFGIKLMT 95 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp--~~elv~l~ 95 (406)
.++++|.|.||||++|++|++.|++.+ ..+++.+.
T Consensus 71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~ 107 (478)
T 4dqv_A 71 PELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLV 107 (478)
T ss_dssp SCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 445799999999999999999888653 36777775
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=93.56 E-value=0.056 Score=52.09 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=26.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
++|.|.||||++|+.|++.|.++. .+++.+.
T Consensus 10 ~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~ 40 (357)
T 1rkx_A 10 KRVFVTGHTGFKGGWLSLWLQTMG-ATVKGYS 40 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred CEEEEECCCchHHHHHHHHHHhCC-CeEEEEe
Confidence 589999999999999999998764 4776665
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=93.52 E-value=0.052 Score=52.41 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=26.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
++|.|.||||++|+.|++.|.+....+++.+.
T Consensus 47 ~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~ 78 (357)
T 2x6t_A 47 RMIIVTGGAGFIGSNIVKALNDKGITDILVVD 78 (357)
T ss_dssp -CEEEETTTSHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence 57999999999999999999876535676664
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=93.51 E-value=0.022 Score=56.29 Aligned_cols=74 Identities=11% Similarity=0.130 Sum_probs=40.2
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCC-ceEEEEeccC--cCCccccccccCccccCCCcccccC-cccCCCCCEEEEcCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPY-FGIKLMTADR--KAGQSIGSVFPHLISQDLPTMVAVK-DADFSNVDAVFCCLP 138 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~-~elv~l~s~~--~~G~~i~~v~p~l~~~~~~~~~~~~-~~~~~~vDvVF~al~ 138 (406)
+.||+|+||+|+||..++..|..... -|++.+--.. -.|...+-.+..+....+. . ..+ .+++.++|+||.+.+
T Consensus 8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~-~-t~d~~~al~dADvVvitaG 85 (343)
T 3fi9_A 8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLT-F-TSDIKEALTDAKYIVSSGG 85 (343)
T ss_dssp SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCE-E-ESCHHHHHTTEEEEEECCC
T ss_pred CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceE-E-cCCHHHHhCCCCEEEEccC
Confidence 36899999999999999987765443 2565553211 1221111111111111111 1 112 234679999999976
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=93.50 E-value=0.046 Score=56.01 Aligned_cols=91 Identities=10% Similarity=0.153 Sum_probs=52.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCccc----CCCCCEEEEcCC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDAD----FSNVDAVFCCLP 138 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~----~~~vDvVF~al~ 138 (406)
+||+|+| .|.+|+.+.+.|.++. .++. +.+++.. -..+...++ +..+.... +.++ +.++|+||+|+|
T Consensus 6 ~~IgvIG-~G~mG~~lA~~L~~~G-~~V~-v~dr~~~~~~~l~~~~~---~~gi~~~~--s~~e~v~~l~~aDvVilavp 77 (474)
T 2iz1_A 6 ANFGVVG-MAVMGKNLALNVESRG-YTVA-IYNRTTSKTEEVFKEHQ---DKNLVFTK--TLEEFVGSLEKPRRIMLMVQ 77 (474)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTT-CCEE-EECSSHHHHHHHHHHTT---TSCEEECS--SHHHHHHTBCSSCEEEECCC
T ss_pred CcEEEEe-eHHHHHHHHHHHHhCC-CEEE-EEcCCHHHHHHHHHhCc---CCCeEEeC--CHHHHHhhccCCCEEEEEcc
Confidence 6899999 8999999999998654 3554 3343211 011111110 00110011 1111 124899999999
Q ss_pred Ccc-hHHHH----hhCCCCCEEEEcCCcc
Q 015441 139 HGT-TQEII----KGLPKSLKIVDLSADF 162 (406)
Q Consensus 139 ~~~-s~~~~----~~l~~G~~VIDlSa~f 162 (406)
... ..+.+ +.+..|..|||.+...
T Consensus 78 ~~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (474)
T 2iz1_A 78 AGAATDATIKSLLPLLDIGDILIDGGNTH 106 (474)
T ss_dssp TTHHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred CchHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 863 33333 3356788999988653
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=93.44 E-value=0.09 Score=50.84 Aligned_cols=85 Identities=18% Similarity=0.288 Sum_probs=52.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.+|+|+| .|.+|+.+.+.|..+. +++..+. ++. .+.... .+ +.. ..++ ++.+.++|+|++|+|....
T Consensus 143 ~~vgIiG-~G~IG~~~A~~l~~~G-~~V~~~d-~~~-~~~~~~---~~-g~~---~~~l-~ell~~aDvV~l~~p~~~~t 210 (307)
T 1wwk_A 143 KTIGIIG-FGRIGYQVAKIANALG-MNILLYD-PYP-NEERAK---EV-NGK---FVDL-ETLLKESDVVTIHVPLVEST 210 (307)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEC-SSC-CHHHHH---HT-TCE---ECCH-HHHHHHCSEEEECCCCSTTT
T ss_pred ceEEEEc-cCHHHHHHHHHHHHCC-CEEEEEC-CCC-ChhhHh---hc-Ccc---ccCH-HHHHhhCCEEEEecCCChHH
Confidence 5799999 8999999999998764 5665543 221 111000 00 101 1111 1223579999999996442
Q ss_pred -----HHHHhhCCCCCEEEEcCC
Q 015441 143 -----QEIIKGLPKSLKIVDLSA 160 (406)
Q Consensus 143 -----~~~~~~l~~G~~VIDlSa 160 (406)
.+..+.++.|..+||.+.
T Consensus 211 ~~li~~~~l~~mk~ga~lin~ar 233 (307)
T 1wwk_A 211 YHLINEERLKLMKKTAILINTSR 233 (307)
T ss_dssp TTCBCHHHHHHSCTTCEEEECSC
T ss_pred hhhcCHHHHhcCCCCeEEEECCC
Confidence 344455678999998876
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=93.36 E-value=0.084 Score=53.00 Aligned_cols=87 Identities=18% Similarity=0.263 Sum_probs=52.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc-h
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT-T 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~-s 142 (406)
.+|+|+| .|.+|+.+++.|..+. +++.... +.......... + +... ...+ ++.+.++|+|++++|... +
T Consensus 192 ktvGIIG-lG~IG~~vA~~l~a~G-~~V~~~d-~~~~~~~~~~~---~-G~~~--~~~l-~ell~~aDvV~l~~Plt~~t 261 (393)
T 2nac_A 192 MHVGTVA-AGRIGLAVLRRLAPFD-VHLHYTD-RHRLPESVEKE---L-NLTW--HATR-EDMYPVCDVVTLNCPLHPET 261 (393)
T ss_dssp CEEEEEC-CSHHHHHHHHHHGGGT-CEEEEEC-SSCCCHHHHHH---H-TCEE--CSSH-HHHGGGCSEEEECSCCCTTT
T ss_pred CEEEEEe-ECHHHHHHHHHHHhCC-CEEEEEc-CCccchhhHhh---c-Ccee--cCCH-HHHHhcCCEEEEecCCchHH
Confidence 5799999 9999999999998664 6665443 32211111100 0 1000 0111 223468999999999542 2
Q ss_pred -----HHHHhhCCCCCEEEEcCC
Q 015441 143 -----QEIIKGLPKSLKIVDLSA 160 (406)
Q Consensus 143 -----~~~~~~l~~G~~VIDlSa 160 (406)
.+..+.++.|..+||.|.
T Consensus 262 ~~li~~~~l~~mk~gailIN~aR 284 (393)
T 2nac_A 262 EHMINDETLKLFKRGAYIVNTAR 284 (393)
T ss_dssp TTCBSHHHHTTSCTTEEEEECSC
T ss_pred HHHhhHHHHhhCCCCCEEEECCC
Confidence 334445567889998774
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=93.35 E-value=0.069 Score=49.66 Aligned_cols=32 Identities=25% Similarity=0.234 Sum_probs=25.2
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|.+|.|.||||++|+.|++.|.+.. .+++.+.
T Consensus 3 ~k~vlVTGasg~IG~~la~~L~~~G-~~V~~~~ 34 (267)
T 3rft_A 3 MKRLLVTGAAGQLGRVMRERLAPMA-EILRLAD 34 (267)
T ss_dssp EEEEEEESTTSHHHHHHHHHTGGGE-EEEEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcC-CEEEEEe
Confidence 3579999999999999999998653 4555443
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=93.32 E-value=0.02 Score=56.23 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=21.7
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHP 87 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp 87 (406)
.+||+|+||+|.||..|+.+|....
T Consensus 3 ~~kV~V~GaaG~VG~~la~~L~~~~ 27 (333)
T 5mdh_A 3 PIRVLVTGAAGQIAYSLLYSIGNGS 27 (333)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTT
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCC
Confidence 4799999999999999999987543
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=93.32 E-value=0.038 Score=52.20 Aligned_cols=87 Identities=16% Similarity=0.258 Sum_probs=49.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
+||+|+| .|.+|+.+.+.|.... .++.. .+++. .+.... ....+...... .+.+.++|+||+|+|....
T Consensus 1 m~i~iiG-~G~mG~~~a~~l~~~g-~~V~~-~~~~~--~~~~~~----~~~g~~~~~~~-~~~~~~~Dvvi~~vp~~~~~ 70 (296)
T 2gf2_A 1 MPVGFIG-LGNMGNPMAKNLMKHG-YPLII-YDVFP--DACKEF----QDAGEQVVSSP-ADVAEKADRIITMLPTSINA 70 (296)
T ss_dssp CCEEEEC-CSTTHHHHHHHHHHTT-CCEEE-ECSST--HHHHHH----HTTTCEECSSH-HHHHHHCSEEEECCSSHHHH
T ss_pred CeEEEEe-ccHHHHHHHHHHHHCC-CEEEE-EeCCH--HHHHHH----HHcCCeecCCH-HHHHhcCCEEEEeCCCHHHH
Confidence 3799999 8999999999998653 35543 34321 111110 00011101111 1223578999999976533
Q ss_pred HHHHhh-------CCCCCEEEEcCC
Q 015441 143 QEIIKG-------LPKSLKIVDLSA 160 (406)
Q Consensus 143 ~~~~~~-------l~~G~~VIDlSa 160 (406)
.+.... +..|..|||.|+
T Consensus 71 ~~v~~~~~~~~~~l~~~~~vv~~s~ 95 (296)
T 2gf2_A 71 IEAYSGANGILKKVKKGSLLIDSST 95 (296)
T ss_dssp HHHHHSTTSGGGTCCTTCEEEECSC
T ss_pred HHHHhCchhHHhcCCCCCEEEECCC
Confidence 333332 346788999665
|
| >1q0q_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase; HET: DXP NDP; 1.90A {Escherichia coli} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1q0l_A* 1q0h_A* 3r0i_A* 1k5h_A 1onn_A 1ono_A 1onp_A* 1jvs_A* 1t1r_A* 1t1s_A* 2egh_A* 3anm_A* 3anl_A* 3ann_A* 3iie_A | Back alignment and structure |
|---|
Probab=93.31 E-value=0.081 Score=52.88 Aligned_cols=37 Identities=19% Similarity=0.488 Sum_probs=33.2
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCC-ceEEEEeccCc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPY-FGIKLMTADRK 99 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~-~elv~l~s~~~ 99 (406)
|.+|.|+|+||-||.+-++.+.+||+ +++++++..+.
T Consensus 9 ~k~i~ILGSTGSIGtqtLdVi~~~pd~f~V~aL~ag~n 46 (406)
T 1q0q_A 9 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKN 46 (406)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESSC
T ss_pred ceeEEEEccCcHHHHHHHHHHHhCCCccEEEEEEcCCC
Confidence 46899999999999999999999987 89999987554
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=93.26 E-value=0.16 Score=48.51 Aligned_cols=74 Identities=14% Similarity=0.099 Sum_probs=40.8
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccCc---CCcccc--ccccCccccCCCcccccCcccCCCCCEEEEc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRK---AGQSIG--SVFPHLISQDLPTMVAVKDADFSNVDAVFCC 136 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~~---~G~~i~--~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~a 136 (406)
++||+|+|| |.+|..+...|...... +++.+ ++.. .+..++ ...+ +.+ ........+.+++.++|+||+|
T Consensus 7 ~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~-d~~~~~~~~~~~~~~~~~~-~~~-~~~v~~~~~~~~~~~aD~Vii~ 82 (319)
T 1lld_A 7 PTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLE-DIAKERVEAEVLDMQHGSS-FYP-TVSIDGSDDPEICRDADMVVIT 82 (319)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEE-CSSHHHHHHHHHHHHHTGG-GST-TCEEEEESCGGGGTTCSEEEEC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEE-eCChhHHHHHHHHHHhhhh-hcC-CeEEEeCCCHHHhCCCCEEEEC
Confidence 469999996 99999999988865433 56544 3321 111111 1111 111 1111111123456789999999
Q ss_pred CCCc
Q 015441 137 LPHG 140 (406)
Q Consensus 137 l~~~ 140 (406)
++..
T Consensus 83 v~~~ 86 (319)
T 1lld_A 83 AGPR 86 (319)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9643
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=93.23 E-value=0.081 Score=50.04 Aligned_cols=87 Identities=16% Similarity=0.211 Sum_probs=51.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
.+|+|+| +|.+|+.+++.|.+... ++. +.+++.. .+.+.. .+ + .....++ .+.+.++|+|+.|+|.+..
T Consensus 130 ~~v~iiG-aG~~g~aia~~L~~~g~-~V~-v~~r~~~~~~~l~~---~~-g--~~~~~~~-~~~~~~aDiVi~atp~~~~ 199 (275)
T 2hk9_A 130 KSILVLG-AGGASRAVIYALVKEGA-KVF-LWNRTKEKAIKLAQ---KF-P--LEVVNSP-EEVIDKVQVIVNTTSVGLK 199 (275)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHHTC-EEE-EECSSHHHHHHHTT---TS-C--EEECSCG-GGTGGGCSEEEECSSTTSS
T ss_pred CEEEEEC-chHHHHHHHHHHHHcCC-EEE-EEECCHHHHHHHHH---Hc-C--CeeehhH-HhhhcCCCEEEEeCCCCCC
Confidence 5899999 69999999999986553 554 4443321 111111 01 1 0001111 2234579999999998754
Q ss_pred HH---HH--hhCCCCCEEEEcCC
Q 015441 143 QE---II--KGLPKSLKIVDLSA 160 (406)
Q Consensus 143 ~~---~~--~~l~~G~~VIDlSa 160 (406)
.+ .. ..+..|..|+|++.
T Consensus 200 ~~~~~~i~~~~l~~g~~viDv~~ 222 (275)
T 2hk9_A 200 DEDPEIFNYDLIKKDHVVVDIIY 222 (275)
T ss_dssp TTCCCSSCGGGCCTTSEEEESSS
T ss_pred CCCCCCCCHHHcCCCCEEEEcCC
Confidence 21 12 23467889999876
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=93.21 E-value=0.11 Score=49.18 Aligned_cols=98 Identities=14% Similarity=0.146 Sum_probs=54.3
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-cccccc----cc-------CccccCC----Cccc-ccCc-
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-QSIGSV----FP-------HLISQDL----PTMV-AVKD- 124 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-~~i~~v----~p-------~l~~~~~----~~~~-~~~~- 124 (406)
+.||+|+| .|.+|..+.+.|...- ++++.+ +++..- ...... .. .+...+. ..+. ..+.
T Consensus 4 ~~kV~VIG-aG~mG~~iA~~la~~G-~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~ 80 (283)
T 4e12_A 4 ITNVTVLG-TGVLGSQIAFQTAFHG-FAVTAY-DINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLA 80 (283)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEE-CSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHH
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCC-CeEEEE-eCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHH
Confidence 35899999 7999999999998653 466554 332110 000000 00 0000000 0000 1111
Q ss_pred ccCCCCCEEEEcCCCc--chHHHHh----hCCCCCEEEEcCCccc
Q 015441 125 ADFSNVDAVFCCLPHG--TTQEIIK----GLPKSLKIVDLSADFR 163 (406)
Q Consensus 125 ~~~~~vDvVF~al~~~--~s~~~~~----~l~~G~~VIDlSa~fR 163 (406)
+.+.++|+||.|.+.. ..+++.. .+..++.++|+++...
T Consensus 81 ~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~ 125 (283)
T 4e12_A 81 QAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLL 125 (283)
T ss_dssp HHTTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSC
T ss_pred HHhccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCC
Confidence 2357899999999987 3333333 3456888999888653
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=93.21 E-value=0.081 Score=50.44 Aligned_cols=30 Identities=23% Similarity=0.417 Sum_probs=23.7
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEE
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l 94 (406)
|.||+|+| .|.+|..+...|...- .+++.+
T Consensus 15 ~~~I~VIG-~G~mG~~iA~~la~~G-~~V~~~ 44 (302)
T 1f0y_A 15 VKHVTVIG-GGLMGAGIAQVAAATG-HTVVLV 44 (302)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEE
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCC-CeEEEE
Confidence 46899999 6999999999998653 466544
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=93.19 E-value=0.096 Score=53.76 Aligned_cols=91 Identities=12% Similarity=0.103 Sum_probs=52.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-Cccccc-cccCccccCCCcccccCccc----CCCCCEEEEcC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGS-VFPHLISQDLPTMVAVKDAD----FSNVDAVFCCL 137 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~-v~p~l~~~~~~~~~~~~~~~----~~~vDvVF~al 137 (406)
+||+|+| .|.+|+.+.+.|.++. .++.. .+++.. -+.+.. ..+ +..+... .+.++ +.++|+||+|+
T Consensus 3 m~IgvIG-~G~mG~~lA~~La~~G-~~V~v-~dr~~~~~~~l~~~~~~---g~gi~~~--~~~~e~v~~l~~aDvVilaV 74 (482)
T 2pgd_A 3 ADIALIG-LAVMGQNLILNMNDHG-FVVCA-FNRTVSKVDDFLANEAK---GTKVLGA--HSLEEMVSKLKKPRRIILLV 74 (482)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTT-CCEEE-ECSSTHHHHHHHHTTTT---TSSCEEC--SSHHHHHHHBCSSCEEEECS
T ss_pred CeEEEEC-hHHHHHHHHHHHHHCC-CeEEE-EeCCHHHHHHHHhcccc---CCCeEEe--CCHHHHHhhccCCCEEEEeC
Confidence 5799999 8999999999998654 35543 343211 011111 000 0111101 11112 24799999999
Q ss_pred CCc-chHHHH----hhCCCCCEEEEcCCcc
Q 015441 138 PHG-TTQEII----KGLPKSLKIVDLSADF 162 (406)
Q Consensus 138 ~~~-~s~~~~----~~l~~G~~VIDlSa~f 162 (406)
|.. ...+.+ +.+..|..|||.+...
T Consensus 75 p~~~~v~~vl~~l~~~l~~g~iII~~s~~~ 104 (482)
T 2pgd_A 75 KAGQAVDNFIEKLVPLLDIGDIIIDGGNSE 104 (482)
T ss_dssp CTTHHHHHHHHHHHHHCCTTCEEEECSCCC
T ss_pred CChHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 986 344433 3456788999987643
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=93.18 E-value=0.067 Score=52.34 Aligned_cols=73 Identities=19% Similarity=0.245 Sum_probs=42.3
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccCc---CCcc--ccccccCccccCCCcccccCcccCCCCCEEEEc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRK---AGQS--IGSVFPHLISQDLPTMVAVKDADFSNVDAVFCC 136 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~~---~G~~--i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~a 136 (406)
.+||+|+|| |++|..++..|...+.+ +++.+ +... .|.. +....|.+. .... +..-+.+++.++|+||.+
T Consensus 5 ~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~-D~~~~k~~g~a~DL~~~~~~~~-~~v~-i~~~~~~a~~~aDvVvi~ 80 (326)
T 3pqe_A 5 VNKVALIGA-GFVGSSYAFALINQGITDELVVI-DVNKEKAMGDVMDLNHGKAFAP-QPVK-TSYGTYEDCKDADIVCIC 80 (326)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEE-CSCHHHHHHHHHHHHHTGGGSS-SCCE-EEEECGGGGTTCSEEEEC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEE-ecchHHHHHHHHHHHhcccccc-CCeE-EEeCcHHHhCCCCEEEEe
Confidence 469999995 99999999998866554 56555 3221 1211 222222221 1111 111123457899999999
Q ss_pred CCC
Q 015441 137 LPH 139 (406)
Q Consensus 137 l~~ 139 (406)
.+.
T Consensus 81 ag~ 83 (326)
T 3pqe_A 81 AGA 83 (326)
T ss_dssp CSC
T ss_pred ccc
Confidence 863
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.14 E-value=0.062 Score=51.94 Aligned_cols=32 Identities=13% Similarity=0.263 Sum_probs=26.3
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|++|.|.||||++|+.|++.|.+.. .+++.+.
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~ 32 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKG-YEVHGIK 32 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEEE
Confidence 4689999999999999999998754 4666664
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=93.14 E-value=0.051 Score=54.04 Aligned_cols=90 Identities=12% Similarity=0.246 Sum_probs=52.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-ccccccccCccccCCC----cccccCcccCCCCCEEEEcCC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-QSIGSVFPHLISQDLP----TMVAVKDADFSNVDAVFCCLP 138 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-~~i~~v~p~l~~~~~~----~~~~~~~~~~~~vDvVF~al~ 138 (406)
.+|+|+|+ |.+|+.+++.+..... ++..+. ++..- ..+.+.+ +..+. ....+ .+.+.++|+||.|++
T Consensus 169 ~~V~ViG~-G~iG~~~a~~a~~~Ga-~V~~~d-~~~~~l~~~~~~~----g~~~~~~~~~~~~l-~~~l~~aDvVi~~~~ 240 (377)
T 2vhw_A 169 ADVVVIGA-GTAGYNAARIANGMGA-TVTVLD-INIDKLRQLDAEF----CGRIHTRYSSAYEL-EGAVKRADLVIGAVL 240 (377)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-EEEEEE-SCHHHHHHHHHHT----TTSSEEEECCHHHH-HHHHHHCSEEEECCC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-EEEEEe-CCHHHHHHHHHhc----CCeeEeccCCHHHH-HHHHcCCCEEEECCC
Confidence 58999996 9999999999987654 655543 32110 0111101 10100 00111 112357899999986
Q ss_pred Ccc-------hHHHHhhCCCCCEEEEcCCc
Q 015441 139 HGT-------TQEIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 139 ~~~-------s~~~~~~l~~G~~VIDlSa~ 161 (406)
... .++..+.+..|..+||.+.+
T Consensus 241 ~p~~~t~~li~~~~l~~mk~g~~iV~va~~ 270 (377)
T 2vhw_A 241 VPGAKAPKLVSNSLVAHMKPGAVLVDIAID 270 (377)
T ss_dssp CTTSCCCCCBCHHHHTTSCTTCEEEEGGGG
T ss_pred cCCCCCcceecHHHHhcCCCCcEEEEEecC
Confidence 433 45555666778899999854
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=93.05 E-value=0.078 Score=51.39 Aligned_cols=75 Identities=21% Similarity=0.271 Sum_probs=41.8
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCC-ceEEEEeccCc---CCcc--ccccccCccccCCCcccccCcccCCCCCEEEE
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPY-FGIKLMTADRK---AGQS--IGSVFPHLISQDLPTMVAVKDADFSNVDAVFC 135 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~-~elv~l~s~~~---~G~~--i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~ 135 (406)
+++||+|+|| |.+|..++..|..... -+++.+ +... .|.. +....+.+ +.+.. +..-+.+++.++|+||+
T Consensus 5 ~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~-Di~~~~~~~~~~dl~~~~~~~-~~~~~-i~~~~~~al~~aDvVii 80 (316)
T 1ldn_A 5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLI-DANESKAIGDAMDFNHGKVFA-PKPVD-IWHGDYDDCRDADLVVI 80 (316)
T ss_dssp TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEE-CSSHHHHHHHHHHHHHHTTSS-SSCCE-EEECCGGGTTTCSEEEE
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEE-eCCcchHHHHHhhHHHHhhhc-CCCeE-EEcCcHHHhCCCCEEEE
Confidence 4569999997 9999999998875443 355555 4321 1111 11111111 00111 11112345789999999
Q ss_pred cCCCc
Q 015441 136 CLPHG 140 (406)
Q Consensus 136 al~~~ 140 (406)
|+|..
T Consensus 81 a~~~~ 85 (316)
T 1ldn_A 81 CAGAN 85 (316)
T ss_dssp CCSCC
T ss_pred cCCCC
Confidence 98743
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=93.05 E-value=0.092 Score=44.02 Aligned_cols=84 Identities=13% Similarity=0.122 Sum_probs=52.2
Q ss_pred ccEEEEECcc---cHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 63 QVRIGLLGAS---GYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 63 ~ikVaIvGAT---G~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
+.+|||+||| +..|..+++.|.++. +++..++-+. +++. +. +.+..+ .++.++|+|+.++|.
T Consensus 4 p~siAVVGaS~~~~~~g~~v~~~L~~~g-~~V~pVnP~~------~~i~----G~--~~y~sl--~dlp~vDlavi~~p~ 68 (122)
T 3ff4_A 4 MKKTLILGATPETNRYAYLAAERLKSHG-HEFIPVGRKK------GEVL----GK--TIINER--PVIEGVDTVTLYINP 68 (122)
T ss_dssp CCCEEEETCCSCTTSHHHHHHHHHHHHT-CCEEEESSSC------SEET----TE--ECBCSC--CCCTTCCEEEECSCH
T ss_pred CCEEEEEccCCCCCCHHHHHHHHHHHCC-CeEEEECCCC------CcCC----Ce--eccCCh--HHCCCCCEEEEEeCH
Confidence 3579999998 678999999888654 3787876432 1111 11 111122 122128999999999
Q ss_pred cchHHHHhhC-CCCCE-EEEcCCcc
Q 015441 140 GTTQEIIKGL-PKSLK-IVDLSADF 162 (406)
Q Consensus 140 ~~s~~~~~~l-~~G~~-VIDlSa~f 162 (406)
....++++.+ +.|++ |+ +++-|
T Consensus 69 ~~v~~~v~e~~~~g~k~v~-~~~G~ 92 (122)
T 3ff4_A 69 QNQLSEYNYILSLKPKRVI-FNPGT 92 (122)
T ss_dssp HHHGGGHHHHHHHCCSEEE-ECTTC
T ss_pred HHHHHHHHHHHhcCCCEEE-ECCCC
Confidence 8888877654 55643 44 44444
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=93.02 E-value=0.12 Score=48.66 Aligned_cols=31 Identities=19% Similarity=0.467 Sum_probs=25.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||||++|+.|++.|++.. .+++.+.
T Consensus 2 k~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~ 32 (322)
T 2p4h_X 2 GRVCVTGGTGFLGSWIIKSLLENG-YSVNTTI 32 (322)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTT-CEEEEEC
T ss_pred CEEEEECChhHHHHHHHHHHHHCC-CEEEEEE
Confidence 479999999999999999888653 4666554
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=92.98 E-value=0.17 Score=51.09 Aligned_cols=84 Identities=14% Similarity=0.286 Sum_probs=52.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc--
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT-- 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~-- 141 (406)
.+|+|+| .|.+|+.+.+.|..+ .+++.+.. +... .... + ......+ ++.+.++|+|++++|...
T Consensus 157 ktvGIIG-lG~IG~~vA~~l~~~-G~~V~~yd-~~~~-~~~~-------~--~~~~~sl-~ell~~aDvV~lhvPlt~~T 222 (416)
T 3k5p_A 157 KTLGIVG-YGNIGSQVGNLAESL-GMTVRYYD-TSDK-LQYG-------N--VKPAASL-DELLKTSDVVSLHVPSSKST 222 (416)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEC-TTCC-CCBT-------T--BEECSSH-HHHHHHCSEEEECCCC----
T ss_pred CEEEEEe-eCHHHHHHHHHHHHC-CCEEEEEC-Ccch-hccc-------C--cEecCCH-HHHHhhCCEEEEeCCCCHHH
Confidence 4799999 999999999999876 46776553 2210 0000 0 0001111 223467999999999643
Q ss_pred ----hHHHHhhCCCCCEEEEcCCc
Q 015441 142 ----TQEIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 142 ----s~~~~~~l~~G~~VIDlSa~ 161 (406)
..+....++.|..+||.|--
T Consensus 223 ~~li~~~~l~~mk~gailIN~aRG 246 (416)
T 3k5p_A 223 SKLITEAKLRKMKKGAFLINNARG 246 (416)
T ss_dssp -CCBCHHHHHHSCTTEEEEECSCT
T ss_pred hhhcCHHHHhhCCCCcEEEECCCC
Confidence 23444556789999988743
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=92.96 E-value=0.11 Score=50.78 Aligned_cols=85 Identities=18% Similarity=0.312 Sum_probs=51.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc-h
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT-T 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~-s 142 (406)
++|+|+| .|.+|+.+.+.|..+. +++..+ +++. .+.... .+ + .. ..++ ++.+.++|+|++|+|... +
T Consensus 151 ~~vgIIG-~G~iG~~iA~~l~~~G-~~V~~~-d~~~-~~~~~~---~~-g--~~-~~~l-~~~l~~aDvVil~vp~~~~t 218 (334)
T 2dbq_A 151 KTIGIIG-LGRIGQAIAKRAKGFN-MRILYY-SRTR-KEEVER---EL-N--AE-FKPL-EDLLRESDFVVLAVPLTRET 218 (334)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTT-CEEEEE-CSSC-CHHHHH---HH-C--CE-ECCH-HHHHHHCSEEEECCCCCTTT
T ss_pred CEEEEEc-cCHHHHHHHHHHHhCC-CEEEEE-CCCc-chhhHh---hc-C--cc-cCCH-HHHHhhCCEEEECCCCChHH
Confidence 5899999 8999999999998654 566544 3322 111000 00 1 10 1111 122457899999999765 2
Q ss_pred -----HHHHhhCCCCCEEEEcCC
Q 015441 143 -----QEIIKGLPKSLKIVDLSA 160 (406)
Q Consensus 143 -----~~~~~~l~~G~~VIDlSa 160 (406)
++..+.+..|..+||.|.
T Consensus 219 ~~~i~~~~~~~mk~~ailIn~sr 241 (334)
T 2dbq_A 219 YHLINEERLKLMKKTAILINIAR 241 (334)
T ss_dssp TTCBCHHHHHHSCTTCEEEECSC
T ss_pred HHhhCHHHHhcCCCCcEEEECCC
Confidence 233445677889998773
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=92.84 E-value=0.1 Score=51.36 Aligned_cols=88 Identities=16% Similarity=0.167 Sum_probs=52.1
Q ss_pred cEEEEECcccHHHHHHHHHHH-cCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc-
Q 015441 64 VRIGLLGASGYTGAEIVRLLA-NHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT- 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~-~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~- 141 (406)
.+|+|+| .|.+|+.+.+.|. .+. +++... +++........ .+ + .....++ ++.+.++|+|++|+|...
T Consensus 164 ~~vgIIG-~G~IG~~vA~~l~~~~G-~~V~~~-d~~~~~~~~~~---~~-g--~~~~~~l-~ell~~aDvVil~vp~~~~ 233 (348)
T 2w2k_A 164 HVLGAVG-LGAIQKEIARKAVHGLG-MKLVYY-DVAPADAETEK---AL-G--AERVDSL-EELARRSDCVSVSVPYMKL 233 (348)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTC-CEEEEE-CSSCCCHHHHH---HH-T--CEECSSH-HHHHHHCSEEEECCCCSGG
T ss_pred CEEEEEE-ECHHHHHHHHHHHHhcC-CEEEEE-CCCCcchhhHh---hc-C--cEEeCCH-HHHhccCCEEEEeCCCChH
Confidence 5799999 8999999999998 664 566544 33221110000 00 1 0001011 122457899999999754
Q ss_pred h-----HHHHhhCCCCCEEEEcCCc
Q 015441 142 T-----QEIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 142 s-----~~~~~~l~~G~~VIDlSa~ 161 (406)
+ .+..+.++.|..+||.|.-
T Consensus 234 t~~li~~~~l~~mk~gailin~srg 258 (348)
T 2w2k_A 234 THHLIDEAFFAAMKPGSRIVNTARG 258 (348)
T ss_dssp GTTCBCHHHHHHSCTTEEEEECSCG
T ss_pred HHHHhhHHHHhcCCCCCEEEECCCC
Confidence 2 2334456778899987653
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=92.76 E-value=0.042 Score=55.07 Aligned_cols=29 Identities=28% Similarity=0.504 Sum_probs=23.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+||+|+| .|++|..+...|.+ ..+++.+.
T Consensus 1 MkI~VIG-~G~vG~~~A~~La~--G~~V~~~d 29 (402)
T 1dlj_A 1 MKIAVAG-SGYVGLSLGVLLSL--QNEVTIVD 29 (402)
T ss_dssp CEEEEEC-CSHHHHHHHHHHTT--TSEEEEEC
T ss_pred CEEEEEC-CCHHHHHHHHHHhC--CCEEEEEE
Confidence 3899999 79999999999987 46766653
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=92.73 E-value=0.067 Score=51.62 Aligned_cols=72 Identities=11% Similarity=0.125 Sum_probs=41.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccC---cCCcccccccc--CccccCCCcccccCcccCCCCCEEEEcC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADR---KAGQSIGSVFP--HLISQDLPTMVAVKDADFSNVDAVFCCL 137 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~---~~G~~i~~v~p--~l~~~~~~~~~~~~~~~~~~vDvVF~al 137 (406)
|||+|+|| |.||+.+.-+|...+.+ |++.+ +.. ..|.-++-.|. .+. ........-+.+++.++|+|+.+.
T Consensus 1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~-Di~~~~~~G~a~DL~h~~~~~~-~~~~i~~~~d~~~~~~aDvVvitA 77 (294)
T 2x0j_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALV-DIAEDLAVGEAMDLAHAAAGID-KYPKIVGGADYSLLKGSEIIVVTA 77 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEE-CSSHHHHHHHHHHHHHHHGGGT-CCCEEEEESCGGGGTTCSEEEECC
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEE-eCCCCcchhhhhhhhcccccCC-CCCeEecCCCHHHhCCCCEEEEec
Confidence 58999995 99999999988766554 56555 432 12332222110 010 011111112234678999999988
Q ss_pred C
Q 015441 138 P 138 (406)
Q Consensus 138 ~ 138 (406)
+
T Consensus 78 G 78 (294)
T 2x0j_A 78 G 78 (294)
T ss_dssp C
T ss_pred C
Confidence 7
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=92.71 E-value=0.073 Score=49.81 Aligned_cols=84 Identities=13% Similarity=0.126 Sum_probs=49.9
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
+|+|+| +|.+|+.+++.|..... ++. +.+++.. .+.+... +.. . ..++ .+. .++|+|+.|+|.+...
T Consensus 118 ~v~iiG-~G~~g~~~a~~l~~~g~-~v~-v~~r~~~~~~~l~~~---~~~-~---~~~~-~~~-~~~Divi~~tp~~~~~ 185 (263)
T 2d5c_A 118 PALVLG-AGGAGRAVAFALREAGL-EVW-VWNRTPQRALALAEE---FGL-R---AVPL-EKA-REARLLVNATRVGLED 185 (263)
T ss_dssp CEEEEC-CSHHHHHHHHHHHHTTC-CEE-EECSSHHHHHHHHHH---HTC-E---ECCG-GGG-GGCSEEEECSSTTTTC
T ss_pred eEEEEC-CcHHHHHHHHHHHHCCC-EEE-EEECCHHHHHHHHHH---hcc-c---hhhH-hhc-cCCCEEEEccCCCCCC
Confidence 799999 68899999999987654 554 4444321 0111110 000 0 1111 122 5789999999987532
Q ss_pred ---H-H-HhhCCCCCEEEEcCC
Q 015441 144 ---E-I-IKGLPKSLKIVDLSA 160 (406)
Q Consensus 144 ---~-~-~~~l~~G~~VIDlSa 160 (406)
. + .+.+..|..|||++.
T Consensus 186 ~~~~~l~~~~l~~g~~viD~~~ 207 (263)
T 2d5c_A 186 PSASPLPAELFPEEGAAVDLVY 207 (263)
T ss_dssp TTCCSSCGGGSCSSSEEEESCC
T ss_pred CCCCCCCHHHcCCCCEEEEeec
Confidence 1 2 233567889999874
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=92.70 E-value=0.082 Score=51.73 Aligned_cols=86 Identities=17% Similarity=0.258 Sum_probs=52.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc--
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT-- 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~-- 141 (406)
.+|+|+| .|.+|+.+.+.|..+. +++.+. ++.......... + +.. ...+ ++.+.++|+|++|+|...
T Consensus 146 ~tvGIIG-~G~IG~~vA~~l~~~G-~~V~~~-d~~~~~~~~~~~---~-g~~---~~~l-~ell~~aDvV~l~~P~t~~t 214 (330)
T 4e5n_A 146 ATVGFLG-MGAIGLAMADRLQGWG-ATLQYH-EAKALDTQTEQR---L-GLR---QVAC-SELFASSDFILLALPLNADT 214 (330)
T ss_dssp CEEEEEC-CSHHHHHHHHHTTTSC-CEEEEE-CSSCCCHHHHHH---H-TEE---ECCH-HHHHHHCSEEEECCCCSTTT
T ss_pred CEEEEEe-eCHHHHHHHHHHHHCC-CEEEEE-CCCCCcHhHHHh---c-Cce---eCCH-HHHHhhCCEEEEcCCCCHHH
Confidence 5899999 9999999999987663 566554 332211100000 0 100 1111 223457899999999532
Q ss_pred ----hHHHHhhCCCCCEEEEcCC
Q 015441 142 ----TQEIIKGLPKSLKIVDLSA 160 (406)
Q Consensus 142 ----s~~~~~~l~~G~~VIDlSa 160 (406)
..+..+.++.|..+||.+.
T Consensus 215 ~~li~~~~l~~mk~gailIN~ar 237 (330)
T 4e5n_A 215 LHLVNAELLALVRPGALLVNPCR 237 (330)
T ss_dssp TTCBCHHHHTTSCTTEEEEECSC
T ss_pred HHHhCHHHHhhCCCCcEEEECCC
Confidence 2344455677999998774
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=92.64 E-value=0.15 Score=48.00 Aligned_cols=31 Identities=23% Similarity=0.503 Sum_probs=25.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|||.|.||||++|+.|++.|++.. .+++.+.
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~ 31 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARG-LEVAVLD 31 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTT-CEEEEEC
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCC-CEEEEEE
Confidence 379999999999999999998753 4666653
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=92.60 E-value=0.11 Score=51.99 Aligned_cols=82 Identities=15% Similarity=0.250 Sum_probs=52.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.+|+|+| .|.+|+.+.+.|..+ .+++.... +... . .. . +.. ...+ ++.+.++|+|++|+|....
T Consensus 117 ~tvGIIG-lG~IG~~vA~~l~~~-G~~V~~~d-~~~~-~-~~-----~-g~~---~~~l-~ell~~aDvV~l~~Plt~~g 181 (380)
T 2o4c_A 117 RTYGVVG-AGQVGGRLVEVLRGL-GWKVLVCD-PPRQ-A-RE-----P-DGE---FVSL-ERLLAEADVISLHTPLNRDG 181 (380)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEC-HHHH-H-HS-----T-TSC---CCCH-HHHHHHCSEEEECCCCCSSS
T ss_pred CEEEEEe-CCHHHHHHHHHHHHC-CCEEEEEc-CChh-h-hc-----c-Ccc---cCCH-HHHHHhCCEEEEeccCcccc
Confidence 5799999 999999999999865 36765543 2110 0 00 0 101 1111 1223578999999986543
Q ss_pred ---------HHHHhhCCCCCEEEEcCC
Q 015441 143 ---------QEIIKGLPKSLKIVDLSA 160 (406)
Q Consensus 143 ---------~~~~~~l~~G~~VIDlSa 160 (406)
.+..+.++.|..+||.|.
T Consensus 182 ~~~T~~li~~~~l~~mk~gailIN~sR 208 (380)
T 2o4c_A 182 EHPTRHLLDEPRLAALRPGTWLVNASR 208 (380)
T ss_dssp SSCCTTSBCHHHHHTSCTTEEEEECSC
T ss_pred ccchhhhcCHHHHhhCCCCcEEEECCC
Confidence 445556678899998763
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=92.59 E-value=0.08 Score=52.21 Aligned_cols=90 Identities=12% Similarity=0.270 Sum_probs=53.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcc----cccCcccCCCCCEEEEcCC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTM----VAVKDADFSNVDAVFCCLP 138 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~----~~~~~~~~~~vDvVF~al~ 138 (406)
.+|.|+|| |-+|+.+++.+..... +++.+. ++.. -+.+.+.. ...+... ..+ .+.+.++|+||.|++
T Consensus 168 ~~VlViGa-GgvG~~aa~~a~~~Ga-~V~v~d-r~~~r~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~DvVI~~~~ 239 (361)
T 1pjc_A 168 GKVVILGG-GVVGTEAAKMAVGLGA-QVQIFD-INVERLSYLETLF----GSRVELLYSNSAEI-ETAVAEADLLIGAVL 239 (361)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-EEEEEE-SCHHHHHHHHHHH----GGGSEEEECCHHHH-HHHHHTCSEEEECCC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-EEEEEe-CCHHHHHHHHHhh----CceeEeeeCCHHHH-HHHHcCCCEEEECCC
Confidence 58999997 9999999999987654 665543 3211 01111110 0010000 011 112347999999997
Q ss_pred Ccc-------hHHHHhhCCCCCEEEEcCCc
Q 015441 139 HGT-------TQEIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 139 ~~~-------s~~~~~~l~~G~~VIDlSa~ 161 (406)
... ..+..+.+..|.+|+|++.+
T Consensus 240 ~~~~~~~~li~~~~~~~~~~g~~ivdv~~~ 269 (361)
T 1pjc_A 240 VPGRRAPILVPASLVEQMRTGSVIVDVAVD 269 (361)
T ss_dssp CTTSSCCCCBCHHHHTTSCTTCEEEETTCT
T ss_pred cCCCCCCeecCHHHHhhCCCCCEEEEEecC
Confidence 543 34445556778899999864
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=92.57 E-value=0.085 Score=54.25 Aligned_cols=91 Identities=15% Similarity=0.258 Sum_probs=52.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCccc-C---CCCCEEEEcCC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDAD-F---SNVDAVFCCLP 138 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~-~---~~vDvVF~al~ 138 (406)
.+|+|+| .|.+|+.|.+.|.++- .++... +++.. -+.+...++ +..+... .+.++ . .++|+||+|+|
T Consensus 16 ~~IgvIG-lG~MG~~lA~~La~~G-~~V~v~-~r~~~~~~~l~~~~~---~~gi~~~--~s~~e~v~~l~~aDvVil~Vp 87 (480)
T 2zyd_A 16 QQIGVVG-MAVMGRNLALNIESRG-YTVSIF-NRSREKTEEVIAENP---GKKLVPY--YTVKEFVESLETPRRILLMVK 87 (480)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHTTT-CCEEEE-CSSHHHHHHHHHHST---TSCEEEC--SSHHHHHHTBCSSCEEEECSC
T ss_pred CeEEEEc-cHHHHHHHHHHHHhCC-CeEEEE-eCCHHHHHHHHhhCC---CCCeEEe--CCHHHHHhCCCCCCEEEEECC
Confidence 5799999 9999999999998653 455444 33211 011111110 0011001 11111 1 24899999999
Q ss_pred Cc-chHHHHh----hCCCCCEEEEcCCcc
Q 015441 139 HG-TTQEIIK----GLPKSLKIVDLSADF 162 (406)
Q Consensus 139 ~~-~s~~~~~----~l~~G~~VIDlSa~f 162 (406)
.+ ...+.+. .+..|..|||.+.-.
T Consensus 88 ~~~~v~~vl~~l~~~l~~g~iIId~s~g~ 116 (480)
T 2zyd_A 88 AGAGTDAAIDSLKPYLDKGDIIIDGGNTF 116 (480)
T ss_dssp SSSHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 85 3444443 345688999988754
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=92.56 E-value=0.13 Score=49.97 Aligned_cols=72 Identities=15% Similarity=0.191 Sum_probs=41.0
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC---Cc--cccccccCccccCCCcccc-cCcccCCCCCEEEEc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA---GQ--SIGSVFPHLISQDLPTMVA-VKDADFSNVDAVFCC 136 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~---G~--~i~~v~p~l~~~~~~~~~~-~~~~~~~~vDvVF~a 136 (406)
++||+|+|| |++|..+..+|.....++ +.+.+.... |. .+......+ ..... +.. .+.+++.++|+||.+
T Consensus 4 ~~kI~VIGa-G~vG~~ia~~la~~g~~~-v~L~Di~~~~l~~~~~~l~~~~~~~-~~~~~-i~~t~d~~al~~aD~Vi~a 79 (322)
T 1t2d_A 4 KAKIVLVGS-GMIGGVMATLIVQKNLGD-VVLFDIVKNMPHGKALDTSHTNVMA-YSNCK-VSGSNTYDDLAGADVVIVT 79 (322)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCE-EEEECSSSSHHHHHHHHHHTHHHHH-TCCCC-EEEECCGGGGTTCSEEEEC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhhhhhc-CCCcE-EEECCCHHHhCCCCEEEEe
Confidence 469999997 999999999998766556 455553321 10 011000000 00111 111 223456899999999
Q ss_pred CC
Q 015441 137 LP 138 (406)
Q Consensus 137 l~ 138 (406)
.+
T Consensus 80 ~g 81 (322)
T 1t2d_A 80 AG 81 (322)
T ss_dssp CS
T ss_pred CC
Confidence 84
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=92.55 E-value=0.064 Score=53.53 Aligned_cols=29 Identities=28% Similarity=0.316 Sum_probs=23.7
Q ss_pred cCCccEEEEECcccHHHHHHHHHHHcCCC
Q 015441 60 SEKQVRIGLLGASGYTGAEIVRLLANHPY 88 (406)
Q Consensus 60 ~~~~ikVaIvGATG~vG~eLlrlL~~hp~ 88 (406)
+....||+|+||+|.||..++-.|...+.
T Consensus 29 ~~~~~KV~ViGAaG~VG~~la~~l~~~~l 57 (375)
T 7mdh_A 29 WKKLVNIAVSGAAGMISNHLLFKLASGEV 57 (375)
T ss_dssp CCCCEEEEEETTTSHHHHHHHHHHHHTTT
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHcCCc
Confidence 33457999999999999999998875443
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=92.55 E-value=0.094 Score=50.84 Aligned_cols=74 Identities=18% Similarity=0.240 Sum_probs=42.0
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCC-ceEEEEeccCc---CCcc--ccccccCccccCCCcccccCcccCCCCCEEEEc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPY-FGIKLMTADRK---AGQS--IGSVFPHLISQDLPTMVAVKDADFSNVDAVFCC 136 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~-~elv~l~s~~~---~G~~--i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~a 136 (406)
++||+|+|| |.+|..++..|...+. .+++.+ +... .|.. +....+.+ +.+.. +..-+.+++.++|+|+++
T Consensus 6 ~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~-Di~~~~~~g~~~dl~~~~~~~-~~~~~-v~~~~~~a~~~aDvVvi~ 81 (317)
T 3d0o_A 6 GNKVVLIGN-GAVGSSYAFSLVNQSIVDELVII-DLDTEKVRGDVMDLKHATPYS-PTTVR-VKAGEYSDCHDADLVVIC 81 (317)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEE-CSCHHHHHHHHHHHHHHGGGS-SSCCE-EEECCGGGGTTCSEEEEC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEE-eCChhHhhhhhhhHHhhhhhc-CCCeE-EEeCCHHHhCCCCEEEEC
Confidence 369999997 9999999998886543 355555 3221 1211 11111111 11211 111124457899999999
Q ss_pred CCCc
Q 015441 137 LPHG 140 (406)
Q Consensus 137 l~~~ 140 (406)
.+..
T Consensus 82 ag~~ 85 (317)
T 3d0o_A 82 AGAA 85 (317)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8743
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=92.54 E-value=0.24 Score=50.65 Aligned_cols=101 Identities=10% Similarity=0.086 Sum_probs=55.4
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCc-----ccccc--ccCcccc----CCCccc-ccCcccCC
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQ-----SIGSV--FPHLISQ----DLPTMV-AVKDADFS 128 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~-----~i~~v--~p~l~~~----~~~~~~-~~~~~~~~ 128 (406)
..+.||+||| .|..|..+...|++. .++++.+.-+...+. .+... ...+... .+..+. ..+.+.+.
T Consensus 52 ~~i~kVaVIG-aG~MG~~IA~~la~a-G~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~al~ 129 (460)
T 3k6j_A 52 YDVNSVAIIG-GGTMGKAMAICFGLA-GIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFHKLS 129 (460)
T ss_dssp CCCCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGGGCT
T ss_pred ccCCEEEEEC-CCHHHHHHHHHHHHC-CCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHHHHc
Confidence 3446899999 799999999999865 356655532211110 00000 0000000 000010 11223567
Q ss_pred CCCEEEEcCCCcch--HHHHh----hCCCCCEEEEcCCccc
Q 015441 129 NVDAVFCCLPHGTT--QEIIK----GLPKSLKIVDLSADFR 163 (406)
Q Consensus 129 ~vDvVF~al~~~~s--~~~~~----~l~~G~~VIDlSa~fR 163 (406)
++|+||.|.+.... +++.. .+..++.++|+++...
T Consensus 130 ~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~ 170 (460)
T 3k6j_A 130 NCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLD 170 (460)
T ss_dssp TCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSC
T ss_pred cCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChh
Confidence 99999999997643 22332 3456888889887653
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=92.52 E-value=0.22 Score=50.14 Aligned_cols=83 Identities=12% Similarity=0.165 Sum_probs=52.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.+|+|+| .|.+|+.+.+.|..+. +++.+.. +... ... .+ ......+ ++.+.++|+|++++|....
T Consensus 146 ktlGiIG-lG~IG~~vA~~l~~~G-~~V~~~d-~~~~-~~~-------~~--~~~~~~l-~ell~~aDvV~l~~P~t~~t 211 (404)
T 1sc6_A 146 KKLGIIG-YGHIGTQLGILAESLG-MYVYFYD-IENK-LPL-------GN--ATQVQHL-SDLLNMSDVVSLHVPENPST 211 (404)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEC-SSCC-CCC-------TT--CEECSCH-HHHHHHCSEEEECCCSSTTT
T ss_pred CEEEEEe-ECHHHHHHHHHHHHCC-CEEEEEc-CCch-hcc-------CC--ceecCCH-HHHHhcCCEEEEccCCChHH
Confidence 4799999 9999999999998763 6775553 3211 110 00 0001111 2234679999999997532
Q ss_pred -----HHHHhhCCCCCEEEEcCC
Q 015441 143 -----QEIIKGLPKSLKIVDLSA 160 (406)
Q Consensus 143 -----~~~~~~l~~G~~VIDlSa 160 (406)
.+....++.|..+||.|.
T Consensus 212 ~~li~~~~l~~mk~ga~lIN~aR 234 (404)
T 1sc6_A 212 KNMMGAKEISLMKPGSLLINASR 234 (404)
T ss_dssp TTCBCHHHHHHSCTTEEEEECSC
T ss_pred HHHhhHHHHhhcCCCeEEEECCC
Confidence 334455678999998873
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=92.51 E-value=0.084 Score=51.33 Aligned_cols=73 Identities=14% Similarity=0.164 Sum_probs=42.0
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccCc---CCc--cccccccCccccCCCcccccCcccCCCCCEEEE
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRK---AGQ--SIGSVFPHLISQDLPTMVAVKDADFSNVDAVFC 135 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~~---~G~--~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~ 135 (406)
+++||+|+|| |.+|..++-+|...+.+ |++.+ +... .|. .+....+.+ .+.. +..-+.+++.++|+|+.
T Consensus 4 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~-Di~~~~~~g~~~dl~~~~~~~--~~~~-v~~~~~~a~~~aDvVii 78 (318)
T 1ez4_A 4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIV-DVVKDRTKGDALDLEDAQAFT--APKK-IYSGEYSDCKDADLVVI 78 (318)
T ss_dssp TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEE-CSSHHHHHHHHHHHHGGGGGS--CCCE-EEECCGGGGTTCSEEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEE-eCCchHHHHHHHHHHHHHHhc--CCeE-EEECCHHHhCCCCEEEE
Confidence 3479999997 99999999988865544 55554 4321 111 111111111 1111 11112445789999999
Q ss_pred cCCC
Q 015441 136 CLPH 139 (406)
Q Consensus 136 al~~ 139 (406)
+.+.
T Consensus 79 ~ag~ 82 (318)
T 1ez4_A 79 TAGA 82 (318)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9874
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=92.49 E-value=0.12 Score=50.29 Aligned_cols=33 Identities=12% Similarity=0.239 Sum_probs=26.9
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
||.+|.|.||||++|+.|++.|.+.. .+++.+.
T Consensus 27 M~k~vlVtGatG~IG~~l~~~L~~~g-~~V~~~~ 59 (381)
T 1n7h_A 27 PRKIALITGITGQDGSYLTEFLLGKG-YEVHGLI 59 (381)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred hCCeEEEEcCCchHHHHHHHHHHHCC-CEEEEEe
Confidence 44689999999999999999998754 5777665
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.48 E-value=0.12 Score=50.14 Aligned_cols=35 Identities=11% Similarity=0.224 Sum_probs=27.4
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCceEEEEec
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA 96 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s 96 (406)
.||++|.|.||||++|+.|++.|.+.. .+++.+..
T Consensus 22 ~M~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r 56 (375)
T 1t2a_A 22 HMRNVALITGITGQDGSYLAEFLLEKG-YEVHGIVR 56 (375)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEEC
T ss_pred hcCcEEEEECCCchHHHHHHHHHHHCC-CEEEEEEC
Confidence 345789999999999999999998754 57776653
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=92.44 E-value=0.13 Score=50.93 Aligned_cols=87 Identities=14% Similarity=0.187 Sum_probs=51.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCce-EEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFG-IKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT- 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~e-lv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~- 141 (406)
.+|+|+| .|.+|+.+++.|..+. ++ +... +++........ .+ + ......+ ++.+.++|+|++|+|...
T Consensus 165 ~tvgIIG-~G~IG~~vA~~l~~~G-~~~V~~~-d~~~~~~~~~~---~~-g--~~~~~~l-~ell~~aDvV~l~~P~t~~ 234 (364)
T 2j6i_A 165 KTIATIG-AGRIGYRVLERLVPFN-PKELLYY-DYQALPKDAEE---KV-G--ARRVENI-EELVAQADIVTVNAPLHAG 234 (364)
T ss_dssp CEEEEEC-CSHHHHHHHHHHGGGC-CSEEEEE-CSSCCCHHHHH---HT-T--EEECSSH-HHHHHTCSEEEECCCCSTT
T ss_pred CEEEEEC-cCHHHHHHHHHHHhCC-CcEEEEE-CCCccchhHHH---hc-C--cEecCCH-HHHHhcCCEEEECCCCChH
Confidence 5799999 9999999999998654 54 6544 33221111000 00 1 0001111 223458999999999752
Q ss_pred h-----HHHHhhCCCCCEEEEcCC
Q 015441 142 T-----QEIIKGLPKSLKIVDLSA 160 (406)
Q Consensus 142 s-----~~~~~~l~~G~~VIDlSa 160 (406)
+ .+..+.++.|..+||.+.
T Consensus 235 t~~li~~~~l~~mk~ga~lIn~ar 258 (364)
T 2j6i_A 235 TKGLINKELLSKFKKGAWLVNTAR 258 (364)
T ss_dssp TTTCBCHHHHTTSCTTEEEEECSC
T ss_pred HHHHhCHHHHhhCCCCCEEEECCC
Confidence 2 334445677889998764
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.38 E-value=0.11 Score=47.90 Aligned_cols=33 Identities=21% Similarity=0.157 Sum_probs=27.1
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCC--ceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPY--FGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~--~elv~l~ 95 (406)
+.+|.|.||+|.+|+++++.|+++.. .+++.+.
T Consensus 21 ~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~ 55 (267)
T 1sny_A 21 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTC 55 (267)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEE
T ss_pred CCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEe
Confidence 45799999999999999999997653 5776654
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=92.25 E-value=0.085 Score=50.82 Aligned_cols=72 Identities=13% Similarity=0.164 Sum_probs=41.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccCc---CCcccc--ccccCccccCCCccc-ccCcccCCCCCEEEEc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRK---AGQSIG--SVFPHLISQDLPTMV-AVKDADFSNVDAVFCC 136 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~~---~G~~i~--~v~p~l~~~~~~~~~-~~~~~~~~~vDvVF~a 136 (406)
|||+|+|| |.+|..++..|...+.. +++.+ +... .|..++ ...+.+. ... .+. ..+.+++.++|+|+++
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~-D~~~~~~~g~~~dl~~~~~~~~-~~~-~i~~t~d~~a~~~aDiVVia 76 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALV-DIAEDLAVGEAMDLAHAAAGID-KYP-KIVGGADYSLLKGSEIIVVT 76 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEE-CSSHHHHHHHHHHHHHHHHTTT-CCC-EEEEESCGGGGTTCSEEEEC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEE-ECChHHHHHHHHHHHhhhhhcC-CCC-EEEEeCCHHHhCCCCEEEEC
Confidence 48999997 99999999988865544 55544 4322 121111 1111111 111 122 1234567899999999
Q ss_pred CCC
Q 015441 137 LPH 139 (406)
Q Consensus 137 l~~ 139 (406)
.+.
T Consensus 77 ag~ 79 (294)
T 1oju_A 77 AGL 79 (294)
T ss_dssp CCC
T ss_pred CCC
Confidence 864
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=92.23 E-value=0.11 Score=54.10 Aligned_cols=85 Identities=15% Similarity=0.218 Sum_probs=52.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc-ch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG-TT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~-~s 142 (406)
.+|+|+| .|.+|+.+.+.|..+. +++... ++...-..... + +.. ...+ ++.+.++|+|++|+|.. .+
T Consensus 143 ~~vgIIG-~G~IG~~vA~~l~~~G-~~V~~~-d~~~~~~~a~~----~-g~~---~~~l-~e~~~~aDvV~l~~P~~~~t 210 (529)
T 1ygy_A 143 KTVGVVG-LGRIGQLVAQRIAAFG-AYVVAY-DPYVSPARAAQ----L-GIE---LLSL-DDLLARADFISVHLPKTPET 210 (529)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHTTT-CEEEEE-CTTSCHHHHHH----H-TCE---ECCH-HHHHHHCSEEEECCCCSTTT
T ss_pred CEEEEEe-eCHHHHHHHHHHHhCC-CEEEEE-CCCCChhHHHh----c-CcE---EcCH-HHHHhcCCEEEECCCCchHH
Confidence 5899999 9999999999998763 566554 33221000000 0 100 0011 12345799999999976 44
Q ss_pred HH-----HHhhCCCCCEEEEcCC
Q 015441 143 QE-----IIKGLPKSLKIVDLSA 160 (406)
Q Consensus 143 ~~-----~~~~l~~G~~VIDlSa 160 (406)
.. ..+.++.|+.+||.+.
T Consensus 211 ~~~i~~~~~~~~k~g~ilin~ar 233 (529)
T 1ygy_A 211 AGLIDKEALAKTKPGVIIVNAAR 233 (529)
T ss_dssp TTCBCHHHHTTSCTTEEEEECSC
T ss_pred HHHhCHHHHhCCCCCCEEEECCC
Confidence 33 3334567899999873
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=92.16 E-value=0.083 Score=51.34 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=25.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l 94 (406)
|||.|.||||++|+.|++.|.+...++++.+
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~ 31 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEV 31 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEE
Confidence 4899999999999999999987665566554
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=92.15 E-value=0.11 Score=48.30 Aligned_cols=87 Identities=13% Similarity=0.230 Sum_probs=49.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
+||+|+| .|.+|..+.+.|.... .++.. .++......... +...... ... .+...++|+||+|++.....
T Consensus 1 M~I~iIG-~G~mG~~la~~l~~~g-~~V~~-~~~~~~~~~~~~----~~~~g~~--~~~-~~~~~~aDvvi~~v~~~~~~ 70 (264)
T 1i36_A 1 LRVGFIG-FGEVAQTLASRLRSRG-VEVVT-SLEGRSPSTIER----ARTVGVT--ETS-EEDVYSCPVVISAVTPGVAL 70 (264)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTT-CEEEE-CCTTCCHHHHHH----HHHHTCE--ECC-HHHHHTSSEEEECSCGGGHH
T ss_pred CeEEEEe-chHHHHHHHHHHHHCC-CeEEE-eCCccCHHHHHH----HHHCCCc--CCH-HHHHhcCCEEEEECCCHHHH
Confidence 3899999 8999999999998653 36554 333101011111 0000110 111 12235799999999987554
Q ss_pred HHHhhC-C--CCCEEEEcCCc
Q 015441 144 EIIKGL-P--KSLKIVDLSAD 161 (406)
Q Consensus 144 ~~~~~l-~--~G~~VIDlSa~ 161 (406)
+.+..+ + +. .|||.|+-
T Consensus 71 ~~~~~~~~~~~~-~vi~~s~~ 90 (264)
T 1i36_A 71 GAARRAGRHVRG-IYVDINNI 90 (264)
T ss_dssp HHHHHHHTTCCS-EEEECSCC
T ss_pred HHHHHHHHhcCc-EEEEccCC
Confidence 434322 2 23 88998764
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.14 E-value=0.25 Score=49.51 Aligned_cols=105 Identities=23% Similarity=0.350 Sum_probs=57.3
Q ss_pred ccccCCccEEEEECcccHHHHHHHHHHHc----CCCc--eEEEEeccCc--CCcc----ccccc--cC-ccccCCCc-cc
Q 015441 57 TQKSEKQVRIGLLGASGYTGAEIVRLLAN----HPYF--GIKLMTADRK--AGQS----IGSVF--PH-LISQDLPT-MV 120 (406)
Q Consensus 57 ~~~~~~~ikVaIvGATG~vG~eLlrlL~~----hp~~--elv~l~s~~~--~G~~----i~~v~--p~-l~~~~~~~-~~ 120 (406)
...++++.||+|+| .|-.|..|..+|.+ ++.. ..+.+-.++. .++. +...+ +. |++..++. +.
T Consensus 28 ~~~~~~p~KI~ViG-aGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~ 106 (391)
T 4fgw_A 28 LKAAEKPFKVTVIG-SGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLV 106 (391)
T ss_dssp -----CCEEEEEEC-CSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEE
T ss_pred ccccCCCCeEEEEC-cCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcE
Confidence 34456678999999 99999999999984 3321 1233433332 1211 11111 11 23323321 11
Q ss_pred c-cC-cccCCCCCEEEEcCCCcchHHHHhh----CCCCCEEEEcCCcc
Q 015441 121 A-VK-DADFSNVDAVFCCLPHGTTQEIIKG----LPKSLKIVDLSADF 162 (406)
Q Consensus 121 ~-~~-~~~~~~vDvVF~al~~~~s~~~~~~----l~~G~~VIDlSa~f 162 (406)
. .| .+.+.++|+++++.|+..-++.++. +..+..+|.++--+
T Consensus 107 ~t~dl~~al~~ad~ii~avPs~~~r~~l~~l~~~~~~~~~iv~~~KGi 154 (391)
T 4fgw_A 107 ANPDLIDSVKDVDIIVFNIPHQFLPRICSQLKGHVDSHVRAISCLKGF 154 (391)
T ss_dssp EESCHHHHHTTCSEEEECSCGGGHHHHHHHHTTTSCTTCEEEECCCSC
T ss_pred EeCCHHHHHhcCCEEEEECChhhhHHHHHHhccccCCCceeEEecccc
Confidence 1 11 1234789999999999877776654 34567788665433
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=92.06 E-value=0.091 Score=51.12 Aligned_cols=74 Identities=12% Similarity=0.174 Sum_probs=41.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccCc---CCccccccccC-ccccCCCcccccCcccCCCCCEEEEcCC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRK---AGQSIGSVFPH-LISQDLPTMVAVKDADFSNVDAVFCCLP 138 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~~---~G~~i~~v~p~-l~~~~~~~~~~~~~~~~~~vDvVF~al~ 138 (406)
|||+|+|| |.+|..++..|...+.+ +++.+ +... .|...+-.+.. +...+......-+.+++.++|+||.+.+
T Consensus 1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~-D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag 78 (314)
T 3nep_X 1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMV-DIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAG 78 (314)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEE-CSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEE-eCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCC
Confidence 48999996 99999999988866554 55444 4322 12111111100 0001111111112456789999999987
Q ss_pred C
Q 015441 139 H 139 (406)
Q Consensus 139 ~ 139 (406)
.
T Consensus 79 ~ 79 (314)
T 3nep_X 79 L 79 (314)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=92.05 E-value=0.14 Score=49.61 Aligned_cols=85 Identities=13% Similarity=0.157 Sum_probs=52.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc-h
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT-T 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~-s 142 (406)
.+|+|+| .|.+|+.+.+.|..+. +++..+. ++. .+.... .+ +.. ..++ ++.+.++|+|++|+|... +
T Consensus 143 ~~vgIIG-~G~IG~~~A~~l~~~G-~~V~~~d-~~~-~~~~~~---~~-g~~---~~~l-~ell~~aDvVvl~~P~~~~t 210 (313)
T 2ekl_A 143 KTIGIVG-FGRIGTKVGIIANAMG-MKVLAYD-ILD-IREKAE---KI-NAK---AVSL-EELLKNSDVISLHVTVSKDA 210 (313)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTT-CEEEEEC-SSC-CHHHHH---HT-TCE---ECCH-HHHHHHCSEEEECCCCCTTS
T ss_pred CEEEEEe-eCHHHHHHHHHHHHCC-CEEEEEC-CCc-chhHHH---hc-Cce---ecCH-HHHHhhCCEEEEeccCChHH
Confidence 5899999 8999999999998664 5665543 322 111000 00 100 1111 122357899999999544 2
Q ss_pred -----HHHHhhCCCCCEEEEcCC
Q 015441 143 -----QEIIKGLPKSLKIVDLSA 160 (406)
Q Consensus 143 -----~~~~~~l~~G~~VIDlSa 160 (406)
.+..+.++.|..+||.+.
T Consensus 211 ~~li~~~~l~~mk~ga~lIn~ar 233 (313)
T 2ekl_A 211 KPIIDYPQFELMKDNVIIVNTSR 233 (313)
T ss_dssp CCSBCHHHHHHSCTTEEEEESSC
T ss_pred HHhhCHHHHhcCCCCCEEEECCC
Confidence 344456678899998876
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=92.03 E-value=0.25 Score=47.58 Aligned_cols=93 Identities=18% Similarity=0.304 Sum_probs=54.3
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-------CCccccccccCccc-cCCCcccccCcccCCCCCEEE
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-------AGQSIGSVFPHLIS-QDLPTMVAVKDADFSNVDAVF 134 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-------~G~~i~~v~p~l~~-~~~~~~~~~~~~~~~~vDvVF 134 (406)
++||+|+| .|.+|..+...|.... .++..+ .+.. .|..+. .+.... ..+.. ..+.++..++|+||
T Consensus 19 ~~kI~IiG-aGa~G~~~a~~L~~~G-~~V~l~-~~~~~~~~i~~~g~~~~--~~~~~~~~~~~~--~~~~~~~~~~D~vi 91 (318)
T 3hwr_A 19 GMKVAIMG-AGAVGCYYGGMLARAG-HEVILI-ARPQHVQAIEATGLRLE--TQSFDEQVKVSA--SSDPSAVQGADLVL 91 (318)
T ss_dssp -CEEEEES-CSHHHHHHHHHHHHTT-CEEEEE-CCHHHHHHHHHHCEEEE--CSSCEEEECCEE--ESCGGGGTTCSEEE
T ss_pred CCcEEEEC-cCHHHHHHHHHHHHCC-CeEEEE-EcHhHHHHHHhCCeEEE--cCCCcEEEeeee--eCCHHHcCCCCEEE
Confidence 47999999 8999999999998543 366555 3221 121111 111100 01110 11122346899999
Q ss_pred EcCCCcchHHHHhh----CCCCCEEEEcCCcc
Q 015441 135 CCLPHGTTQEIIKG----LPKSLKIVDLSADF 162 (406)
Q Consensus 135 ~al~~~~s~~~~~~----l~~G~~VIDlSa~f 162 (406)
+|++.....+.++. +..+..||.+..-+
T Consensus 92 lavk~~~~~~~l~~l~~~l~~~~~iv~~~nGi 123 (318)
T 3hwr_A 92 FCVKSTDTQSAALAMKPALAKSALVLSLQNGV 123 (318)
T ss_dssp ECCCGGGHHHHHHHHTTTSCTTCEEEEECSSS
T ss_pred EEcccccHHHHHHHHHHhcCCCCEEEEeCCCC
Confidence 99998866666544 34567888776654
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=92.01 E-value=0.11 Score=53.36 Aligned_cols=94 Identities=16% Similarity=0.235 Sum_probs=51.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCc-cccCCCcccccCccc----CCCCCEEEEcC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHL-ISQDLPTMVAVKDAD----FSNVDAVFCCL 137 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l-~~~~~~~~~~~~~~~----~~~vDvVF~al 137 (406)
+||+|+| .|.+|+.+.+.|.++. .++.. .+++.. -..+...++.. .+..+... .+.++ +.++|+||+|+
T Consensus 2 MkIgVIG-~G~mG~~lA~~La~~G-~~V~v-~dr~~~~~~~l~~~~g~~~~~~~i~~~--~~~~e~v~~l~~aDvVilaV 76 (478)
T 1pgj_A 2 MDVGVVG-LGVMGANLALNIAEKG-FKVAV-FNRTYSKSEEFMKANASAPFAGNLKAF--ETMEAFAASLKKPRKALILV 76 (478)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTT-CCEEE-ECSSHHHHHHHHHHTTTSTTGGGEEEC--SCHHHHHHHBCSSCEEEECC
T ss_pred CEEEEEC-hHHHHHHHHHHHHHCC-CEEEE-EeCCHHHHHHHHHhcCCCCCCCCeEEE--CCHHHHHhcccCCCEEEEec
Confidence 4799999 8999999999998654 35543 343211 01111100000 00001001 11112 12589999999
Q ss_pred CCc-chHHHH----hhCCCCCEEEEcCCcc
Q 015441 138 PHG-TTQEII----KGLPKSLKIVDLSADF 162 (406)
Q Consensus 138 ~~~-~s~~~~----~~l~~G~~VIDlSa~f 162 (406)
|.. ...+.+ +.+..|..|||.+.-.
T Consensus 77 p~~~~v~~vl~~l~~~l~~g~iIId~sng~ 106 (478)
T 1pgj_A 77 QAGAATDSTIEQLKKVFEKGDILVDTGNAH 106 (478)
T ss_dssp CCSHHHHHHHHHHHHHCCTTCEEEECCCCC
T ss_pred CChHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 986 334433 3456788999987543
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=91.96 E-value=0.15 Score=48.73 Aligned_cols=94 Identities=17% Similarity=0.210 Sum_probs=51.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEecc--Cc-CCccccccc--cCccccCCCccccc---Cc-ccCCCCCEEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD--RK-AGQSIGSVF--PHLISQDLPTMVAV---KD-ADFSNVDAVF 134 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~--~~-~G~~i~~v~--p~l~~~~~~~~~~~---~~-~~~~~vDvVF 134 (406)
+||+|+| .|.+|..+...|.+.. .++..+. + +. .-+.+.... ... +..+..+... +. +...++|+||
T Consensus 1 m~I~iiG-~G~mG~~~a~~L~~~g-~~V~~~~-r~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~D~vi 76 (335)
T 1txg_A 1 MIVSILG-AGAMGSALSVPLVDNG-NEVRIWG-TEFDTEILKSISAGREHPRL-GVKLNGVEIFWPEQLEKCLENAEVVL 76 (335)
T ss_dssp CEEEEES-CCHHHHHHHHHHHHHC-CEEEEEC-CGGGHHHHHHHHTTCCBTTT-TBCCCSEEEECGGGHHHHHTTCSEEE
T ss_pred CEEEEEC-cCHHHHHHHHHHHhCC-CeEEEEE-ccCCHHHHHHHHHhCcCccc-CccccceEEecHHhHHHHHhcCCEEE
Confidence 3899999 7999999999887532 3555443 3 21 001111100 000 0000000111 11 2246899999
Q ss_pred EcCCCcchHHHHhh---CCCCCEEEEcCCc
Q 015441 135 CCLPHGTTQEIIKG---LPKSLKIVDLSAD 161 (406)
Q Consensus 135 ~al~~~~s~~~~~~---l~~G~~VIDlSa~ 161 (406)
+|++.....+.++. +..+..|||++.-
T Consensus 77 ~~v~~~~~~~v~~~i~~l~~~~~vv~~~ng 106 (335)
T 1txg_A 77 LGVSTDGVLPVMSRILPYLKDQYIVLISKG 106 (335)
T ss_dssp ECSCGGGHHHHHHHHTTTCCSCEEEECCCS
T ss_pred EcCChHHHHHHHHHHhcCCCCCEEEEEcCc
Confidence 99998866555433 4457789998743
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=91.85 E-value=0.12 Score=50.38 Aligned_cols=74 Identities=18% Similarity=0.234 Sum_probs=40.7
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc--CCccccccccC-ccccCCCccc-ccCcccCCCCCEEEEcCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK--AGQSIGSVFPH-LISQDLPTMV-AVKDADFSNVDAVFCCLP 138 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~--~G~~i~~v~p~-l~~~~~~~~~-~~~~~~~~~vDvVF~al~ 138 (406)
++||+|+|| |.+|..+..+|......+++.+--... .|...+-.+.. +...... +. ..+.+++.++|+||.+.+
T Consensus 7 ~~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~-v~~t~d~~a~~~aDiVIiaag 84 (324)
T 3gvi_A 7 RNKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAK-FTGANDYAAIEGADVVIVTAG 84 (324)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCC-EEEESSGGGGTTCSEEEECCS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCE-EEEeCCHHHHCCCCEEEEccC
Confidence 369999997 999999999888654336655532111 11111111100 0001111 21 123356789999999976
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=91.80 E-value=0.14 Score=50.12 Aligned_cols=74 Identities=8% Similarity=0.012 Sum_probs=40.8
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccCc---CCcccccccc-CccccCCCcccccCcccCCCCCEEEEcC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRK---AGQSIGSVFP-HLISQDLPTMVAVKDADFSNVDAVFCCL 137 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~~---~G~~i~~v~p-~l~~~~~~~~~~~~~~~~~~vDvVF~al 137 (406)
..||+|+|| |.+|..++..|...+.+ +++.+ +... .|...+-.+. .+.. ........+.+++.++|+||.+.
T Consensus 21 ~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~-Di~~~~~~g~a~DL~~~~~~~~-~~~i~~t~d~~~~~daDiVIita 97 (330)
T 3ldh_A 21 YNKITVVGC-DAVGMADAISVLMKDLADEVALV-DVMEDKLKGEMMDLEHGSLFLH-TAKIVSGKDYSVSAGSKLVVITA 97 (330)
T ss_dssp CCEEEEEST-THHHHHHHHHHHHHCCCSEEEEE-CSCHHHHHHHHHHHHHHGGGSC-CSEEEEESSSCSCSSCSEEEECC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEE-ECCHHHHHHHHHHhhhhhhccc-CCeEEEcCCHHHhCCCCEEEEeC
Confidence 368999997 99999999988866544 55554 3221 1211110000 0100 00001112234578999999987
Q ss_pred CC
Q 015441 138 PH 139 (406)
Q Consensus 138 ~~ 139 (406)
+.
T Consensus 98 G~ 99 (330)
T 3ldh_A 98 GA 99 (330)
T ss_dssp SC
T ss_pred CC
Confidence 64
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=91.79 E-value=0.15 Score=49.86 Aligned_cols=84 Identities=23% Similarity=0.361 Sum_probs=50.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc-ch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG-TT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~-~s 142 (406)
.+|+|+| .|.+|+.+.+.|..+. +++... +++. .+.... .+ + .. ..++ ++.+.++|+|++|+|.. .+
T Consensus 147 ~~vgIIG-~G~iG~~vA~~l~~~G-~~V~~~-d~~~-~~~~~~---~~-g--~~-~~~l-~e~l~~aDiVil~vp~~~~t 214 (333)
T 2d0i_A 147 KKVGILG-MGAIGKAIARRLIPFG-VKLYYW-SRHR-KVNVEK---EL-K--AR-YMDI-DELLEKSDIVILALPLTRDT 214 (333)
T ss_dssp CEEEEEC-CSHHHHHHHHHHGGGT-CEEEEE-CSSC-CHHHHH---HH-T--EE-ECCH-HHHHHHCSEEEECCCCCTTT
T ss_pred CEEEEEc-cCHHHHHHHHHHHHCC-CEEEEE-CCCc-chhhhh---hc-C--ce-ecCH-HHHHhhCCEEEEcCCCChHH
Confidence 5799999 8999999999998653 566544 3322 111000 00 1 00 1111 12245789999999976 22
Q ss_pred -----HHHHhhCCCCCEEEEcCC
Q 015441 143 -----QEIIKGLPKSLKIVDLSA 160 (406)
Q Consensus 143 -----~~~~~~l~~G~~VIDlSa 160 (406)
.+..+.++.| .+||.|.
T Consensus 215 ~~~i~~~~~~~mk~g-ilin~sr 236 (333)
T 2d0i_A 215 YHIINEERVKKLEGK-YLVNIGR 236 (333)
T ss_dssp TTSBCHHHHHHTBTC-EEEECSC
T ss_pred HHHhCHHHHhhCCCC-EEEECCC
Confidence 2334456778 8998773
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=91.77 E-value=0.11 Score=43.77 Aligned_cols=92 Identities=12% Similarity=0.179 Sum_probs=48.1
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccc-cccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGS-VFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~-v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
++.+|.|+| .|.+|+.+++.|.... .+++.+..+...-+.+.. ..+.+.+ +......+......++|+|+.|++..
T Consensus 6 ~~~~viIiG-~G~~G~~la~~L~~~g-~~v~vid~~~~~~~~~~~~g~~~i~g-d~~~~~~l~~a~i~~ad~vi~~~~~~ 82 (140)
T 3fwz_A 6 ICNHALLVG-YGRVGSLLGEKLLASD-IPLVVIETSRTRVDELRERGVRAVLG-NAANEEIMQLAHLECAKWLILTIPNG 82 (140)
T ss_dssp CCSCEEEEC-CSHHHHHHHHHHHHTT-CCEEEEESCHHHHHHHHHTTCEEEES-CTTSHHHHHHTTGGGCSEEEECCSCH
T ss_pred CCCCEEEEC-cCHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHcCCCEEEC-CCCCHHHHHhcCcccCCEEEEECCCh
Confidence 345799999 6999999999998643 466666532211011110 0000111 11101111111235789999999976
Q ss_pred chHH-HH---hhCCCCCEEE
Q 015441 141 TTQE-II---KGLPKSLKIV 156 (406)
Q Consensus 141 ~s~~-~~---~~l~~G~~VI 156 (406)
.... .+ +.+..+.+||
T Consensus 83 ~~n~~~~~~a~~~~~~~~ii 102 (140)
T 3fwz_A 83 YEAGEIVASARAKNPDIEII 102 (140)
T ss_dssp HHHHHHHHHHHHHCSSSEEE
T ss_pred HHHHHHHHHHHHHCCCCeEE
Confidence 5432 22 2233356777
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=91.74 E-value=0.12 Score=49.62 Aligned_cols=92 Identities=17% Similarity=0.291 Sum_probs=52.7
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-------CCccccccccCccccCCCcccccCcccCCCCCEEE
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-------AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVF 134 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-------~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF 134 (406)
|++||+|+| .|.+|..+...|. . ..++..+..... .|..+.. .+...+.....+.+...++|+||
T Consensus 1 M~mkI~IiG-aGa~G~~~a~~L~-~-g~~V~~~~r~~~~~~~l~~~G~~~~~-----~~~~~~~~~~~~~~~~~~~D~vi 72 (307)
T 3ego_A 1 MSLKIGIIG-GGSVGLLCAYYLS-L-YHDVTVVTRRQEQAAAIQSEGIRLYK-----GGEEFRADCSADTSINSDFDLLV 72 (307)
T ss_dssp -CCEEEEEC-CSHHHHHHHHHHH-T-TSEEEEECSCHHHHHHHHHHCEEEEE-----TTEEEEECCEEESSCCSCCSEEE
T ss_pred CCCEEEEEC-CCHHHHHHHHHHh-c-CCceEEEECCHHHHHHHHhCCceEec-----CCCeecccccccccccCCCCEEE
Confidence 567999999 8999999999988 3 456666542211 1111110 01000000011112335789999
Q ss_pred EcCCCcchHHHHhhCC---CCCEEEEcCCcc
Q 015441 135 CCLPHGTTQEIIKGLP---KSLKIVDLSADF 162 (406)
Q Consensus 135 ~al~~~~s~~~~~~l~---~G~~VIDlSa~f 162 (406)
+|++.....+.++.+. .+. ||.+..-.
T Consensus 73 lavK~~~~~~~l~~l~~~~~~~-ivs~~nGi 102 (307)
T 3ego_A 73 VTVKQHQLQSVFSSLERIGKTN-ILFLQNGM 102 (307)
T ss_dssp ECCCGGGHHHHHHHTTSSCCCE-EEECCSSS
T ss_pred EEeCHHHHHHHHHHhhcCCCCe-EEEecCCc
Confidence 9999887777776653 334 77665443
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=91.70 E-value=0.16 Score=49.54 Aligned_cols=84 Identities=14% Similarity=0.257 Sum_probs=52.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.+|+|+| .|.+|+.+++.|..+. +++..+. ++. .+.... + . .. ...+ ++.+.++|+|++|+|....
T Consensus 147 ~~vgIiG-~G~IG~~~A~~l~~~G-~~V~~~d-~~~-~~~~~~----~-~-~~--~~~l-~ell~~aDvV~l~~p~~~~t 213 (333)
T 1j4a_A 147 QVVGVVG-TGHIGQVFMQIMEGFG-AKVITYD-IFR-NPELEK----K-G-YY--VDSL-DDLYKQADVISLHVPDVPAN 213 (333)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEC-SSC-CHHHHH----T-T-CB--CSCH-HHHHHHCSEEEECSCCCGGG
T ss_pred CEEEEEc-cCHHHHHHHHHHHHCC-CEEEEEC-CCc-chhHHh----h-C-ee--cCCH-HHHHhhCCEEEEcCCCcHHH
Confidence 5799999 9999999999998663 5665543 322 111111 0 0 00 1011 1223578999999996532
Q ss_pred -----HHHHhhCCCCCEEEEcCC
Q 015441 143 -----QEIIKGLPKSLKIVDLSA 160 (406)
Q Consensus 143 -----~~~~~~l~~G~~VIDlSa 160 (406)
.+..+.++.|..+||.|.
T Consensus 214 ~~li~~~~l~~mk~ga~lIn~ar 236 (333)
T 1j4a_A 214 VHMINDESIAKMKQDVVIVNVSR 236 (333)
T ss_dssp TTCBSHHHHHHSCTTEEEEECSC
T ss_pred HHHHhHHHHhhCCCCcEEEECCC
Confidence 334455677899998865
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.70 E-value=0.18 Score=50.79 Aligned_cols=94 Identities=19% Similarity=0.304 Sum_probs=54.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-ccccccccCccccC----------------CCc------cc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-QSIGSVFPHLISQD----------------LPT------MV 120 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-~~i~~v~p~l~~~~----------------~~~------~~ 120 (406)
.||+|+| .|.+|...++.+...- .++. +.+++..- ..+.+....+...+ +.. ..
T Consensus 191 ~kV~ViG-~G~iG~~aa~~a~~lG-a~V~-v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~ 267 (405)
T 4dio_A 191 AKIFVMG-AGVAGLQAIATARRLG-AVVS-ATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAA 267 (405)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTT-CEEE-EECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHH
T ss_pred CEEEEEC-CcHHHHHHHHHHHHCC-CEEE-EEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHh
Confidence 6899999 6999999999998664 3554 44433211 01111000000000 000 00
Q ss_pred ccCcccCCCCCEEEEcC-------CCcchHHHHhhCCCCCEEEEcCCc
Q 015441 121 AVKDADFSNVDAVFCCL-------PHGTTQEIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 121 ~~~~~~~~~vDvVF~al-------~~~~s~~~~~~l~~G~~VIDlSa~ 161 (406)
.+ .+.+.++|+||.|. |.-++++.++..+.|.+|||+|.+
T Consensus 268 ~l-~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~d 314 (405)
T 4dio_A 268 LV-AEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAVE 314 (405)
T ss_dssp HH-HHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTGG
T ss_pred HH-HHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeCC
Confidence 01 11235899999984 233667777778889999999976
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=91.69 E-value=0.056 Score=52.94 Aligned_cols=95 Identities=8% Similarity=0.143 Sum_probs=51.4
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccc--cC-ccccCCC-cccc-cCc-ccCCCCCEEEEcC
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVF--PH-LISQDLP-TMVA-VKD-ADFSNVDAVFCCL 137 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~--p~-l~~~~~~-~~~~-~~~-~~~~~vDvVF~al 137 (406)
||+|+| .|.+|..+...|.... .++..+ +++. .-+.+.... +. +.+..++ .+.. .+. +...++|+||+|+
T Consensus 17 kI~iIG-~G~mG~~la~~L~~~G-~~V~~~-~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav 93 (366)
T 1evy_A 17 KAVVFG-SGAFGTALAMVLSKKC-REVCVW-HMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVI 93 (366)
T ss_dssp EEEEEC-CSHHHHHHHHHHTTTE-EEEEEE-CSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECC
T ss_pred eEEEEC-CCHHHHHHHHHHHhCC-CEEEEE-ECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECC
Confidence 999999 7999999999997542 355444 3321 001111100 00 0010110 0111 111 2246799999999
Q ss_pred CCcchHHHHhh--------CCC-CCEEEEcCCcc
Q 015441 138 PHGTTQEIIKG--------LPK-SLKIVDLSADF 162 (406)
Q Consensus 138 ~~~~s~~~~~~--------l~~-G~~VIDlSa~f 162 (406)
+.....+.+.. +.. +..|||++.-.
T Consensus 94 ~~~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi 127 (366)
T 1evy_A 94 PTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGI 127 (366)
T ss_dssp CHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSC
T ss_pred ChHHHHHHHHHhHHHHHHhcCccCCEEEEECCcC
Confidence 97555544433 335 78899988543
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=91.67 E-value=0.11 Score=50.38 Aligned_cols=88 Identities=15% Similarity=0.103 Sum_probs=54.4
Q ss_pred cEEEEE-CcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCC--CCCEEEEcCCCc
Q 015441 64 VRIGLL-GASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFS--NVDAVFCCLPHG 140 (406)
Q Consensus 64 ikVaIv-GATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~--~vDvVF~al~~~ 140 (406)
.+++|+ |+||..|+.+++.|.++. +++++-...+..|+.+. + ++.+..+ .+... ++|+++.++|..
T Consensus 14 ~siaVV~Gasg~~G~~~~~~l~~~G-~~~v~~VnP~~~g~~i~-------G--~~vy~sl-~el~~~~~vD~avI~vP~~ 82 (305)
T 2fp4_A 14 NTKVICQGFTGKQGTFHSQQALEYG-TNLVGGTTPGKGGKTHL-------G--LPVFNTV-KEAKEQTGATASVIYVPPP 82 (305)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHT-CEEEEEECTTCTTCEET-------T--EEEESSH-HHHHHHHCCCEEEECCCHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHCC-CcEEEEeCCCcCcceEC-------C--eeeechH-HHhhhcCCCCEEEEecCHH
Confidence 457888 999999999999888654 55554444443343321 1 1111111 11112 689999999999
Q ss_pred chHHHHhhC-CCCCEE-EEcCCcc
Q 015441 141 TTQEIIKGL-PKSLKI-VDLSADF 162 (406)
Q Consensus 141 ~s~~~~~~l-~~G~~V-IDlSa~f 162 (406)
...+.+..+ ++|++. |=.+.-|
T Consensus 83 ~~~~~~~e~i~~Gi~~iv~~t~G~ 106 (305)
T 2fp4_A 83 FAAAAINEAIDAEVPLVVCITEGI 106 (305)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCCC
T ss_pred HHHHHHHHHHHCCCCEEEEECCCC
Confidence 888887754 777643 3355544
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=91.67 E-value=0.18 Score=50.41 Aligned_cols=94 Identities=18% Similarity=0.217 Sum_probs=54.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-ccccccccCcc----------c--cCCC------cccccCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-QSIGSVFPHLI----------S--QDLP------TMVAVKD 124 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-~~i~~v~p~l~----------~--~~~~------~~~~~~~ 124 (406)
.||+|+| .|.+|...++.+...- .++.. .+++..- ..+.+....+. + ..+. ....+ .
T Consensus 185 ~kV~ViG-~G~iG~~aa~~a~~lG-a~V~v-~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l-~ 260 (381)
T 3p2y_A 185 ASALVLG-VGVAGLQALATAKRLG-AKTTG-YDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQAL-E 260 (381)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHHT-CEEEE-ECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHH-H
T ss_pred CEEEEEC-chHHHHHHHHHHHHCC-CEEEE-EeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHH-H
Confidence 5899999 6999999999988654 36544 4433210 01111000000 0 0000 00011 1
Q ss_pred ccCCCCCEEEEcC--C-----CcchHHHHhhCCCCCEEEEcCCc
Q 015441 125 ADFSNVDAVFCCL--P-----HGTTQEIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 125 ~~~~~vDvVF~al--~-----~~~s~~~~~~l~~G~~VIDlSa~ 161 (406)
+.+.++|+||.|. | .-++++.++..+.|.+|||++.+
T Consensus 261 e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~d 304 (381)
T 3p2y_A 261 DAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAGE 304 (381)
T ss_dssp HHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGG
T ss_pred HHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeCC
Confidence 2246899999884 2 33567777888889999999975
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=90.94 E-value=0.033 Score=50.46 Aligned_cols=90 Identities=13% Similarity=0.165 Sum_probs=52.6
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
.+.+||+|+| .|.+|+.+.+.|.... .++..+ +++..-..+ ...... .... .+.+.++|+||+|++..
T Consensus 17 ~~~~~I~iIG-~G~mG~~la~~L~~~G-~~V~~~-~r~~~~~~~-------~~~g~~-~~~~-~~~~~~aDvVilav~~~ 84 (201)
T 2yjz_A 17 EKQGVVCIFG-TGDFGKSLGLKMLQCG-YSVVFG-SRNPQVSSL-------LPRGAE-VLCY-SEAASRSDVIVLAVHRE 84 (201)
Confidence 3446899999 8999999999887542 344433 332211111 110111 1111 22346799999999986
Q ss_pred chHHHHhh--CCCCCEEEEcCCcc
Q 015441 141 TTQEIIKG--LPKSLKIVDLSADF 162 (406)
Q Consensus 141 ~s~~~~~~--l~~G~~VIDlSa~f 162 (406)
...+.... ...+..|||+++-.
T Consensus 85 ~~~~v~~l~~~~~~~ivI~~~~G~ 108 (201)
T 2yjz_A 85 HYDFLAELADSLKGRVLIDVSNNQ 108 (201)
Confidence 55544421 22467889988765
|
| >3au8_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH binding; HET: NDP; 1.86A {Plasmodium falciparum} PDB: 3au9_A* 3aua_A* | Back alignment and structure |
|---|
Probab=91.62 E-value=0.14 Score=52.01 Aligned_cols=38 Identities=16% Similarity=0.508 Sum_probs=32.1
Q ss_pred CccEEEEECcccHHHHHHHHHHHc---CCC-ceEEEEeccCc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLAN---HPY-FGIKLMTADRK 99 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~---hp~-~elv~l~s~~~ 99 (406)
+|.||+|+|+||-||.+-++.+.+ ||+ +++++++..+.
T Consensus 76 ~mk~I~ILGSTGSIGtqTLdVi~~~p~~pd~f~V~aLaAg~N 117 (488)
T 3au8_A 76 KPINVAIFGSTGSIGTNALNIIRECNKIENVFNVKALYVNKS 117 (488)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHHHHHHSCCEEEEEEEESSC
T ss_pred cceEEEEEccCcHHHHHHHHHHHcccCCCCeEEEEEEEcCCC
Confidence 356899999999999999999998 555 89999987554
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=91.58 E-value=0.18 Score=49.15 Aligned_cols=74 Identities=18% Similarity=0.248 Sum_probs=41.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc--CCccccccccC-ccccCCCccc-ccCcccCCCCCEEEEcCCC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK--AGQSIGSVFPH-LISQDLPTMV-AVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~--~G~~i~~v~p~-l~~~~~~~~~-~~~~~~~~~vDvVF~al~~ 139 (406)
+||+|+| .|.+|..++..|...+..+++.+--... .|...+-.+.. +.+.... +. ..+.+++.++|+||.+.+.
T Consensus 6 ~kI~iiG-aG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~-v~~t~d~~a~~~aDvVIi~ag~ 83 (321)
T 3p7m_A 6 KKITLVG-AGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFK-VRGTNDYKDLENSDVVIVTAGV 83 (321)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCC-EEEESCGGGGTTCSEEEECCSC
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcE-EEEcCCHHHHCCCCEEEEcCCc
Confidence 6999999 5999999999888655346655532211 12111111100 0011111 22 1234567899999999763
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=91.51 E-value=0.22 Score=48.20 Aligned_cols=92 Identities=18% Similarity=0.239 Sum_probs=52.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-------CCccccccccCccccCCCcccccCcccCCCCCEEEEc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-------AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCC 136 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-------~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~a 136 (406)
+||+|+| .|.+|..+...|.... .++..+. +.. .|..+.. +... .........+.++..++|+||+|
T Consensus 4 mkI~IiG-aG~~G~~~a~~L~~~g-~~V~~~~-r~~~~~~~~~~g~~~~~--~~~~-~~~~~~~~~~~~~~~~~D~Vila 77 (335)
T 3ghy_A 4 TRICIVG-AGAVGGYLGARLALAG-EAINVLA-RGATLQALQTAGLRLTE--DGAT-HTLPVRATHDAAALGEQDVVIVA 77 (335)
T ss_dssp CCEEEES-CCHHHHHHHHHHHHTT-CCEEEEC-CHHHHHHHHHTCEEEEE--TTEE-EEECCEEESCHHHHCCCSEEEEC
T ss_pred CEEEEEC-cCHHHHHHHHHHHHCC-CEEEEEE-ChHHHHHHHHCCCEEec--CCCe-EEEeeeEECCHHHcCCCCEEEEe
Confidence 6899999 8999999999998543 3555554 321 1211111 0000 00000001122234679999999
Q ss_pred CCCcchHHHHhhC----CCCCEEEEcCCc
Q 015441 137 LPHGTTQEIIKGL----PKSLKIVDLSAD 161 (406)
Q Consensus 137 l~~~~s~~~~~~l----~~G~~VIDlSa~ 161 (406)
++.....+.++.+ ..+..||.+..-
T Consensus 78 vk~~~~~~~~~~l~~~l~~~~~iv~~~nG 106 (335)
T 3ghy_A 78 VKAPALESVAAGIAPLIGPGTCVVVAMNG 106 (335)
T ss_dssp CCHHHHHHHHGGGSSSCCTTCEEEECCSS
T ss_pred CCchhHHHHHHHHHhhCCCCCEEEEECCC
Confidence 9987666666543 357788886654
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.50 E-value=0.14 Score=46.27 Aligned_cols=32 Identities=19% Similarity=0.119 Sum_probs=26.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCC-ceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPY-FGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~-~elv~l~ 95 (406)
.+|.|.||+|.+|+++++.|+++.. .+++.+.
T Consensus 4 k~vlItGasggiG~~la~~l~~~g~~~~V~~~~ 36 (250)
T 1yo6_A 4 GSVVVTGANRGIGLGLVQQLVKDKNIRHIIATA 36 (250)
T ss_dssp SEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEE
T ss_pred CEEEEecCCchHHHHHHHHHHhcCCCcEEEEEe
Confidence 4799999999999999999997653 5666654
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.37 E-value=0.19 Score=47.64 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=26.9
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEec
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA 96 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s 96 (406)
++++|.|.||||++|+.|++.|.+.. .+++.+..
T Consensus 13 ~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r 46 (335)
T 1rpn_A 13 MTRSALVTGITGQDGAYLAKLLLEKG-YRVHGLVA 46 (335)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEEC
T ss_pred cCCeEEEECCCChHHHHHHHHHHHCC-CeEEEEeC
Confidence 34789999999999999999998754 57777653
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=91.35 E-value=0.16 Score=49.56 Aligned_cols=72 Identities=15% Similarity=0.202 Sum_probs=41.9
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccCc---CCcc--ccccccCccccCCCcccccCcccCCCCCEEEEc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRK---AGQS--IGSVFPHLISQDLPTMVAVKDADFSNVDAVFCC 136 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~~---~G~~--i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~a 136 (406)
++||+|+|| |.+|..++..|...+.+ +++.+ +... .|.. +....+.+. ... +..-+.+++.++|+||.+
T Consensus 9 ~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~-D~~~~k~~g~a~DL~~~~~~~~--~~~-i~~~~~~a~~~aDiVvi~ 83 (326)
T 3vku_A 9 HQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIV-DIFKDKTKGDAIDLEDALPFTS--PKK-IYSAEYSDAKDADLVVIT 83 (326)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEE-CSCHHHHHHHHHHHHTTGGGSC--CCE-EEECCGGGGTTCSEEEEC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEE-eCChHHHHHHHhhHhhhhhhcC--CcE-EEECcHHHhcCCCEEEEC
Confidence 368999995 99999999998876655 55554 3321 1211 111111111 111 111124467899999999
Q ss_pred CCC
Q 015441 137 LPH 139 (406)
Q Consensus 137 l~~ 139 (406)
.+.
T Consensus 84 ag~ 86 (326)
T 3vku_A 84 AGA 86 (326)
T ss_dssp CCC
T ss_pred CCC
Confidence 874
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.32 E-value=0.17 Score=48.04 Aligned_cols=32 Identities=9% Similarity=0.375 Sum_probs=26.1
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|++|.|.||||++|+.|++.|++.. .+++.+.
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~ 32 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQG-IDLIVFD 32 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred CcEEEEeCCCchhHHHHHHHHHhCC-CEEEEEe
Confidence 4589999999999999999998753 5776664
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=91.31 E-value=0.11 Score=50.60 Aligned_cols=72 Identities=15% Similarity=0.218 Sum_probs=41.4
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccCc---CCcc--ccccccCccccCCCcccccCcccCCCCCEEEEc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRK---AGQS--IGSVFPHLISQDLPTMVAVKDADFSNVDAVFCC 136 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~~---~G~~--i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~a 136 (406)
++||+|+|| |.+|..++-+|...+.+ |++.+ +... .|.. +....+.+ .+.. +..-+.+++.++|+|+.+
T Consensus 9 ~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~-Di~~~~~~g~~~dl~~~~~~~--~~~~-i~~~~~~a~~~aDvVii~ 83 (326)
T 2zqz_A 9 HQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIV-DIFKDKTKGDAIDLSNALPFT--SPKK-IYSAEYSDAKDADLVVIT 83 (326)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEE-CSCHHHHHHHHHHHHTTGGGS--CCCE-EEECCGGGGGGCSEEEEC
T ss_pred CCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEE-eCCchHhHHHHHHHHHHHHhc--CCeE-EEECCHHHhCCCCEEEEc
Confidence 369999997 99999999988865544 45554 4321 1211 11111111 1111 111124457899999999
Q ss_pred CCC
Q 015441 137 LPH 139 (406)
Q Consensus 137 l~~ 139 (406)
.+.
T Consensus 84 ag~ 86 (326)
T 2zqz_A 84 AGA 86 (326)
T ss_dssp CCC
T ss_pred CCC
Confidence 874
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=91.18 E-value=0.15 Score=49.55 Aligned_cols=73 Identities=22% Similarity=0.346 Sum_probs=40.7
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-----CCccccccccC-ccccCCCccc-ccCcccCCCCCEEEE
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-----AGQSIGSVFPH-LISQDLPTMV-AVKDADFSNVDAVFC 135 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-----~G~~i~~v~p~-l~~~~~~~~~-~~~~~~~~~vDvVF~ 135 (406)
+.||+|+|| |.+|..++..|...+.-+++.+ +... .|...+..+.. +..... .+. ..+.+++.++|+||.
T Consensus 8 ~~kv~ViGa-G~vG~~ia~~l~~~g~~~v~l~-D~~~~~~~~~g~a~dl~~~~~~~~~~~-~i~~t~d~~a~~~aDvVIi 84 (315)
T 3tl2_A 8 RKKVSVIGA-GFTGATTAFLLAQKELADVVLV-DIPQLENPTKGKALDMLEASPVQGFDA-NIIGTSDYADTADSDVVVI 84 (315)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEE-CCGGGHHHHHHHHHHHHHHHHHHTCCC-CEEEESCGGGGTTCSEEEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEE-eccchHHHHHHhhhhHHHhhhhccCCC-EEEEcCCHHHhCCCCEEEE
Confidence 358999996 9999999998886543255554 3321 12211111100 000011 111 122456789999999
Q ss_pred cCC
Q 015441 136 CLP 138 (406)
Q Consensus 136 al~ 138 (406)
+.+
T Consensus 85 aag 87 (315)
T 3tl2_A 85 TAG 87 (315)
T ss_dssp CCS
T ss_pred eCC
Confidence 975
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=91.15 E-value=0.15 Score=48.93 Aligned_cols=93 Identities=14% Similarity=0.105 Sum_probs=51.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
.+|.|+|+ |-+|+.+++.|......+++.+ +++. ..+.+...+....+ .......+ .+.+.++|+|+.|+|.+..
T Consensus 142 ~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~-nR~~~ka~~la~~~~~~~~-~~~~~~~~-~~~~~~aDivIn~t~~~~~ 217 (297)
T 2egg_A 142 KRILVIGA-GGGARGIYFSLLSTAAERIDMA-NRTVEKAERLVREGDERRS-AYFSLAEA-ETRLAEYDIIINTTSVGMH 217 (297)
T ss_dssp CEEEEECC-SHHHHHHHHHHHTTTCSEEEEE-CSSHHHHHHHHHHSCSSSC-CEECHHHH-HHTGGGCSEEEECSCTTCS
T ss_pred CEEEEECc-HHHHHHHHHHHHHCCCCEEEEE-eCCHHHHHHHHHHhhhccC-ceeeHHHH-HhhhccCCEEEECCCCCCC
Confidence 47999995 7899999999987654355544 4332 11111111100000 00001111 1234679999999997764
Q ss_pred HH----HHh--hCCCCCEEEEcCC
Q 015441 143 QE----IIK--GLPKSLKIVDLSA 160 (406)
Q Consensus 143 ~~----~~~--~l~~G~~VIDlSa 160 (406)
.. ..+ .+..|..|+|++-
T Consensus 218 ~~~~~~~i~~~~l~~~~~v~D~~y 241 (297)
T 2egg_A 218 PRVEVQPLSLERLRPGVIVSDIIY 241 (297)
T ss_dssp SCCSCCSSCCTTCCTTCEEEECCC
T ss_pred CCCCCCCCCHHHcCCCCEEEEcCC
Confidence 21 111 2456788999874
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=91.11 E-value=0.2 Score=53.22 Aligned_cols=32 Identities=19% Similarity=0.320 Sum_probs=26.6
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+++|.|.||||++|+.|++.|++.. .+++.+.
T Consensus 11 ~~~ilVTGatG~IG~~l~~~L~~~G-~~V~~~~ 42 (699)
T 1z45_A 11 SKIVLVTGGAGYIGSHTVVELIENG-YDCVVAD 42 (699)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCc-CEEEEEE
Confidence 3689999999999999999998754 5776664
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=90.87 E-value=0.34 Score=46.42 Aligned_cols=73 Identities=16% Similarity=0.246 Sum_probs=49.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCC-CceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc--
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHP-YFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG-- 140 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp-~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~-- 140 (406)
.++.|+|++..+|+-+.++|.+.. ...+....++ . .++ .+...++|+||.|++..
T Consensus 159 k~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~-t--------------~~L-------~~~~~~ADIVI~Avg~p~~ 216 (281)
T 2c2x_A 159 AHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTG-T--------------RDL-------PALTRQADIVVAAVGVAHL 216 (281)
T ss_dssp CEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTT-C--------------SCH-------HHHHTTCSEEEECSCCTTC
T ss_pred CEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECc-h--------------hHH-------HHHHhhCCEEEECCCCCcc
Confidence 589999998899999999998763 4555443221 1 111 12235789999999843
Q ss_pred chHHHHhhCCCCCEEEEcCCc
Q 015441 141 TTQEIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 141 ~s~~~~~~l~~G~~VIDlSa~ 161 (406)
+..++ ++.|..|||.+-+
T Consensus 217 I~~~~---vk~GavVIDVgi~ 234 (281)
T 2c2x_A 217 LTADM---VRPGAAVIDVGVS 234 (281)
T ss_dssp BCGGG---SCTTCEEEECCEE
T ss_pred cCHHH---cCCCcEEEEccCC
Confidence 22333 4669999999875
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=90.70 E-value=0.16 Score=43.08 Aligned_cols=76 Identities=8% Similarity=0.055 Sum_probs=41.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-Ccccccc----ccCccccCCCcccccCcccCCCCCEEEEcCC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSV----FPHLISQDLPTMVAVKDADFSNVDAVFCCLP 138 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v----~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~ 138 (406)
.+|.|+| .|.+|+.+++.|.... .+++.+..+... -+.+... ...+.+ +......+....+.++|+|+.|++
T Consensus 4 ~~vlI~G-~G~vG~~la~~L~~~g-~~V~vid~~~~~~~~~~~~~~~~~~~~i~g-d~~~~~~l~~a~i~~ad~vi~~~~ 80 (153)
T 1id1_A 4 DHFIVCG-HSILAINTILQLNQRG-QNVTVISNLPEDDIKQLEQRLGDNADVIPG-DSNDSSVLKKAGIDRCRAILALSD 80 (153)
T ss_dssp SCEEEEC-CSHHHHHHHHHHHHTT-CCEEEEECCCHHHHHHHHHHHCTTCEEEES-CTTSHHHHHHHTTTTCSEEEECSS
T ss_pred CcEEEEC-CCHHHHHHHHHHHHCC-CCEEEEECCChHHHHHHHHhhcCCCeEEEc-CCCCHHHHHHcChhhCCEEEEecC
Confidence 4799999 5999999999998643 466666432110 0011110 000111 111111121223578999999998
Q ss_pred Ccch
Q 015441 139 HGTT 142 (406)
Q Consensus 139 ~~~s 142 (406)
....
T Consensus 81 ~d~~ 84 (153)
T 1id1_A 81 NDAD 84 (153)
T ss_dssp CHHH
T ss_pred ChHH
Confidence 7654
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=90.68 E-value=0.22 Score=48.49 Aligned_cols=73 Identities=18% Similarity=0.242 Sum_probs=41.0
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC---Cc--cccccccCccccCCCcccc-cCcccCCCCCEEEE
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA---GQ--SIGSVFPHLISQDLPTMVA-VKDADFSNVDAVFC 135 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~---G~--~i~~v~p~l~~~~~~~~~~-~~~~~~~~vDvVF~ 135 (406)
|++||+|+|| |.+|..+..+|+....++ +.+.+.... +. .+......+ .... .+.. .+.+++.++|+||.
T Consensus 13 ~~~kI~ViGa-G~vG~~iA~~la~~g~~~-V~L~Di~~~~l~~~~~~l~~~~~~~-~~~~-~i~~t~d~~al~~aD~VI~ 88 (328)
T 2hjr_A 13 MRKKISIIGA-GQIGSTIALLLGQKDLGD-VYMFDIIEGVPQGKALDLNHCMALI-GSPA-KIFGENNYEYLQNSDVVII 88 (328)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCCE-EEEECSSTTHHHHHHHHHHHHHHHH-TCCC-CEEEESCGGGGTTCSEEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHHHHhHhhcc-CCCC-EEEECCCHHHHCCCCEEEE
Confidence 3469999996 999999999998765556 444443321 10 111100000 0010 1111 22345689999999
Q ss_pred cCC
Q 015441 136 CLP 138 (406)
Q Consensus 136 al~ 138 (406)
+.+
T Consensus 89 avg 91 (328)
T 2hjr_A 89 TAG 91 (328)
T ss_dssp CCS
T ss_pred cCC
Confidence 984
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=90.67 E-value=0.2 Score=48.90 Aligned_cols=35 Identities=17% Similarity=0.403 Sum_probs=26.4
Q ss_pred cCCccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 60 SEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 60 ~~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
-+++.+|.|.||||++|+.|++.|++.. .+++.+.
T Consensus 8 ~~~~~~vlVTG~tGfIG~~l~~~L~~~G-~~V~~~~ 42 (404)
T 1i24_A 8 HHHGSRVMVIGGDGYCGWATALHLSKKN-YEVCIVD 42 (404)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred ccCCCeEEEeCCCcHHHHHHHHHHHhCC-CeEEEEE
Confidence 3557899999999999999999998653 5776664
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.63 E-value=0.16 Score=45.77 Aligned_cols=32 Identities=9% Similarity=0.131 Sum_probs=25.8
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
..+|.|.||+|.+|+++++.|.++. .+++.+.
T Consensus 2 ~k~vlVtGasggiG~~la~~l~~~G-~~V~~~~ 33 (242)
T 1uay_A 2 ERSALVTGGASGLGRAAALALKARG-YRVVVLD 33 (242)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHT-CEEEEEE
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEc
Confidence 3579999999999999999998653 4665554
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=90.60 E-value=0.22 Score=47.99 Aligned_cols=32 Identities=19% Similarity=0.470 Sum_probs=24.4
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEE
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l 94 (406)
+++||+|+|| |.+|..+...|......+++.+
T Consensus 3 ~~~kI~VIGa-G~~G~~ia~~la~~g~~~V~l~ 34 (317)
T 2ewd_A 3 ERRKIAVIGS-GQIGGNIAYIVGKDNLADVVLF 34 (317)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCceEEEE
Confidence 3469999996 9999999999986544464444
|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
|---|
Probab=90.60 E-value=0.33 Score=48.71 Aligned_cols=80 Identities=20% Similarity=0.282 Sum_probs=54.8
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCc--eEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcC---
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYF--GIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCL--- 137 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~--elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al--- 137 (406)
..||.|+||+|.+|+.-++.+...... ++..+ +.+..-+ +..+ +.+.++|+||-|.
T Consensus 214 ~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~-D~~~~~~----------g~~~--------~~i~~aDivIn~vlig 274 (394)
T 2qrj_A 214 KPTVLIIGALGRCGSGAIDLLHKVGIPDANILKW-DIKETSR----------GGPF--------DEIPQADIFINCIYLS 274 (394)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEE-CHHHHTT----------CSCC--------THHHHSSEEEECCCCC
T ss_pred CCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEe-ecccccc----------CCch--------hhHhhCCEEEECcCcC
Confidence 468999999999999999999876532 44333 3221000 1111 1123679998885
Q ss_pred ---CCcchHHHHhhC-CCCCEEEEcCCc
Q 015441 138 ---PHGTTQEIIKGL-PKSLKIVDLSAD 161 (406)
Q Consensus 138 ---~~~~s~~~~~~l-~~G~~VIDlSa~ 161 (406)
|.-++++.++.. ..|.+|||+|.|
T Consensus 275 ~~aP~Lvt~e~v~~m~k~gsVIVDVA~D 302 (394)
T 2qrj_A 275 KPIAPFTNMEKLNNPNRRLRTVVDVSAD 302 (394)
T ss_dssp SSCCCSCCHHHHCCTTCCCCEEEETTCC
T ss_pred CCCCcccCHHHHhcCcCCCeEEEEEecC
Confidence 566788888888 779999999987
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=90.40 E-value=0.2 Score=49.09 Aligned_cols=75 Identities=12% Similarity=0.090 Sum_probs=40.9
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccCc---CCcccccccc-CccccCCCcccccCcccCCCCCEEEEc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRK---AGQSIGSVFP-HLISQDLPTMVAVKDADFSNVDAVFCC 136 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~~---~G~~i~~v~p-~l~~~~~~~~~~~~~~~~~~vDvVF~a 136 (406)
...||+|+|| |.+|..++..|+..+.. +++.+ +... .|...+-.|. .+.. ........+.+++.++|+||.+
T Consensus 18 ~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~-Di~~~~~~g~a~DL~~~~~~~~-~~~i~~~~d~~~~~~aDiVvi~ 94 (331)
T 4aj2_A 18 PQNKITVVGV-GAVGMACAISILMKDLADELALV-DVIEDKLKGEMMDLQHGSLFLK-TPKIVSSKDYSVTANSKLVIIT 94 (331)
T ss_dssp CSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEE-CSCHHHHHHHHHHHHHTGGGCS-CCEEEECSSGGGGTTEEEEEEC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEE-eCChHHHHHHHHhhhhhhhccC-CCeEEEcCCHHHhCCCCEEEEc
Confidence 3469999996 99999999888766544 55554 3221 2211111110 0110 0000111223457899999998
Q ss_pred CCC
Q 015441 137 LPH 139 (406)
Q Consensus 137 l~~ 139 (406)
.+.
T Consensus 95 aG~ 97 (331)
T 4aj2_A 95 AGA 97 (331)
T ss_dssp CSC
T ss_pred cCC
Confidence 763
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=90.39 E-value=0.27 Score=47.23 Aligned_cols=71 Identities=11% Similarity=0.220 Sum_probs=39.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccCc---CCcccc--ccccCccccCCCcccccCcccCCCCCEEEEcC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRK---AGQSIG--SVFPHLISQDLPTMVAVKDADFSNVDAVFCCL 137 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~~---~G~~i~--~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al 137 (406)
+||+|+|| |.+|..++..|...... +++.+ +... .|...+ ...+.+ .... +...+.+++.++|+||.|.
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~-D~~~~~~~~~~~~l~~~~~~~--~~~~-i~~~~~~a~~~aDvVIi~~ 75 (304)
T 2v6b_A 1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLV-DRDEDRAQAEAEDIAHAAPVS--HGTR-VWHGGHSELADAQVVILTA 75 (304)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEE-CSSHHHHHHHHHHHTTSCCTT--SCCE-EEEECGGGGTTCSEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEE-eCCHHHHHHHHHhhhhhhhhc--CCeE-EEECCHHHhCCCCEEEEcC
Confidence 48999997 99999999988865433 55555 3321 111111 111101 0111 1111234568999999999
Q ss_pred CC
Q 015441 138 PH 139 (406)
Q Consensus 138 ~~ 139 (406)
+.
T Consensus 76 ~~ 77 (304)
T 2v6b_A 76 GA 77 (304)
T ss_dssp --
T ss_pred CC
Confidence 64
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.34 E-value=0.27 Score=45.93 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=25.9
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
||.|.||||++|+.|++.|.+....+++.+.
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~ 31 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGITDILVVD 31 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCCEEEEE
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCcEEEEEc
Confidence 5899999999999999999876545676664
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=89.88 E-value=0.4 Score=42.05 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=25.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+||.|.||+|.+|+++++.|. + ..+++.+.
T Consensus 4 M~vlVtGasg~iG~~~~~~l~-~-g~~V~~~~ 33 (202)
T 3d7l_A 4 MKILLIGASGTLGSAVKERLE-K-KAEVITAG 33 (202)
T ss_dssp CEEEEETTTSHHHHHHHHHHT-T-TSEEEEEE
T ss_pred cEEEEEcCCcHHHHHHHHHHH-C-CCeEEEEe
Confidence 479999999999999999998 5 56776654
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=89.82 E-value=0.32 Score=47.48 Aligned_cols=89 Identities=16% Similarity=0.171 Sum_probs=50.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-----CCccccc-cccCccccCCCcc--cccCcccCCCCCEEEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-----AGQSIGS-VFPHLISQDLPTM--VAVKDADFSNVDAVFC 135 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-----~G~~i~~-v~p~l~~~~~~~~--~~~~~~~~~~vDvVF~ 135 (406)
.+|.|+|++..+|+-+.++|.+.- .+++ +.+++. .+..+.. .+. ....... .++ .+...++|+||.
T Consensus 178 k~vvVIG~G~iVG~~~A~~L~~~g-AtVt-v~nR~~~~l~~ra~~la~~~~~---~t~~~~t~~~~L-~e~l~~ADIVIs 251 (320)
T 1edz_A 178 KKCIVINRSEIVGRPLAALLANDG-ATVY-SVDVNNIQKFTRGESLKLNKHH---VEDLGEYSEDLL-KKCSLDSDVVIT 251 (320)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTS-CEEE-EECSSEEEEEESCCCSSCCCCE---EEEEEECCHHHH-HHHHHHCSEEEE
T ss_pred CEEEEECCCcchHHHHHHHHHHCC-CEEE-EEeCchHHHHhHHHHHhhhccc---ccccccccHhHH-HHHhccCCEEEE
Confidence 589999988889999999998754 4543 443321 1111110 000 0000000 111 122357999999
Q ss_pred cCCCc---chHHHHhhCCCCCEEEEcCCc
Q 015441 136 CLPHG---TTQEIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 136 al~~~---~s~~~~~~l~~G~~VIDlSa~ 161 (406)
|++.. +..++ ++.|..|||++.+
T Consensus 252 Atg~p~~vI~~e~---vk~GavVIDVgi~ 277 (320)
T 1edz_A 252 GVPSENYKFPTEY---IKEGAVCINFACT 277 (320)
T ss_dssp CCCCTTCCBCTTT---SCTTEEEEECSSS
T ss_pred CCCCCcceeCHHH---cCCCeEEEEcCCC
Confidence 99863 33333 4568999999875
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=89.79 E-value=0.25 Score=43.04 Aligned_cols=77 Identities=18% Similarity=0.081 Sum_probs=40.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCcccccc-ccCccccCCCcccccCcc-cCCCCCEEEEcCCCcc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSV-FPHLISQDLPTMVAVKDA-DFSNVDAVFCCLPHGT 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v-~p~l~~~~~~~~~~~~~~-~~~~vDvVF~al~~~~ 141 (406)
.+|+|+| .|.+|+.+++.|......+++.+..+...-..+... ...+.+ +......+... .+.++|+||.|++...
T Consensus 40 ~~v~IiG-~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~g-d~~~~~~l~~~~~~~~ad~vi~~~~~~~ 117 (183)
T 3c85_A 40 AQVLILG-MGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISG-DATDPDFWERILDTGHVKLVLLAMPHHQ 117 (183)
T ss_dssp CSEEEEC-CSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEEC-CTTCHHHHHTBCSCCCCCEEEECCSSHH
T ss_pred CcEEEEC-CCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEc-CCCCHHHHHhccCCCCCCEEEEeCCChH
Confidence 4799999 799999999999754124565554321110111100 000011 11111111111 2467999999999754
Q ss_pred h
Q 015441 142 T 142 (406)
Q Consensus 142 s 142 (406)
.
T Consensus 118 ~ 118 (183)
T 3c85_A 118 G 118 (183)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=89.78 E-value=0.15 Score=46.03 Aligned_cols=78 Identities=17% Similarity=0.274 Sum_probs=42.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCcccccc--ccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSV--FPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v--~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
|||.|+| .|.+|+.+++.|.+. ..+++.+..+...-+.+... ...+.+ +......+....+.++|+|+.|++...
T Consensus 1 M~iiIiG-~G~~G~~la~~L~~~-g~~v~vid~~~~~~~~l~~~~~~~~i~g-d~~~~~~l~~a~i~~ad~vi~~~~~d~ 77 (218)
T 3l4b_C 1 MKVIIIG-GETTAYYLARSMLSR-KYGVVIINKDRELCEEFAKKLKATIIHG-DGSHKEILRDAEVSKNDVVVILTPRDE 77 (218)
T ss_dssp CCEEEEC-CHHHHHHHHHHHHHT-TCCEEEEESCHHHHHHHHHHSSSEEEES-CTTSHHHHHHHTCCTTCEEEECCSCHH
T ss_pred CEEEEEC-CCHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHHHHcCCeEEEc-CCCCHHHHHhcCcccCCEEEEecCCcH
Confidence 4799999 599999999999864 34666664322111111100 000111 111111121223568999999999876
Q ss_pred hHH
Q 015441 142 TQE 144 (406)
Q Consensus 142 s~~ 144 (406)
...
T Consensus 78 ~n~ 80 (218)
T 3l4b_C 78 VNL 80 (218)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=89.65 E-value=0.39 Score=48.74 Aligned_cols=94 Identities=19% Similarity=0.244 Sum_probs=53.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc------CCccccccccCccc---c--CCCcccccCcccCCCCCE
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK------AGQSIGSVFPHLIS---Q--DLPTMVAVKDADFSNVDA 132 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~------~G~~i~~v~p~l~~---~--~~~~~~~~~~~~~~~vDv 132 (406)
.|.-|+| +||+|.-+...|++.- .+++.+.-+.. .|. .....|.+.. . .-..+... .+..++|+
T Consensus 12 ~~~~ViG-lGyvGlp~A~~La~~G-~~V~~~D~~~~kv~~L~~g~-~pi~epgl~~ll~~~~~~g~l~~t--td~~~aDv 86 (431)
T 3ojo_A 12 SKLTVVG-LGYIGLPTSIMFAKHG-VDVLGVDINQQTIDKLQNGQ-ISIEEPGLQEVYEEVLSSGKLKVS--TTPEASDV 86 (431)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTT-CEEEEECSCHHHHHHHHTTC-CSSCCTTHHHHHHHHHHTTCEEEE--SSCCCCSE
T ss_pred CccEEEe-eCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHCCC-CCcCCCCHHHHHHhhcccCceEEe--CchhhCCE
Confidence 5799999 9999999999998753 46666632211 111 0001111100 0 00001111 12457999
Q ss_pred EEEcCCCcch----------------HHHHhhCCCCCEEEEcCCcc
Q 015441 133 VFCCLPHGTT----------------QEIIKGLPKSLKIVDLSADF 162 (406)
Q Consensus 133 VF~al~~~~s----------------~~~~~~l~~G~~VIDlSa~f 162 (406)
+|.|+|+... ..+.+.+..|..|||.|.-.
T Consensus 87 vii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~ 132 (431)
T 3ojo_A 87 FIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIA 132 (431)
T ss_dssp EEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCC
T ss_pred EEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCC
Confidence 9999997652 12333456788999988753
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=89.63 E-value=0.36 Score=46.46 Aligned_cols=31 Identities=29% Similarity=0.414 Sum_probs=24.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCC-CceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHP-YFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp-~~elv~l~ 95 (406)
+||+|+|| |++|..+...|.... ..+++.+.
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D 32 (310)
T 1guz_A 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLD 32 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEe
Confidence 48999997 999999999988653 45665553
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=89.31 E-value=1.1 Score=45.59 Aligned_cols=96 Identities=14% Similarity=0.145 Sum_probs=53.3
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC----Cc-cccccccC------cccc---C-CCcccccCcccC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA----GQ-SIGSVFPH------LISQ---D-LPTMVAVKDADF 127 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~----G~-~i~~v~p~------l~~~---~-~~~~~~~~~~~~ 127 (406)
+.||+|+| .|.+|..+...|...- ++++.+ +++.. +. .+...... +... . ...+ ..+.+.+
T Consensus 37 ~~kV~VIG-aG~MG~~iA~~la~~G-~~V~l~-D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~~~~ 112 (463)
T 1zcj_A 37 VSSVGVLG-LGTMGRGIAISFARVG-ISVVAV-ESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTKEL 112 (463)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHTTT-CEEEEE-CSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCGGGG
T ss_pred CCEEEEEC-cCHHHHHHHHHHHhCC-CeEEEE-ECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCHHHH
Confidence 45899999 7999999999998653 465544 33211 00 00000000 0000 0 0001 1122345
Q ss_pred CCCCEEEEcCCCcch--HHHH----hhCCCCCEEEEcCCcc
Q 015441 128 SNVDAVFCCLPHGTT--QEII----KGLPKSLKIVDLSADF 162 (406)
Q Consensus 128 ~~vDvVF~al~~~~s--~~~~----~~l~~G~~VIDlSa~f 162 (406)
.++|+||.|++.... +++. +.+..++.|+++++..
T Consensus 113 ~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~ 153 (463)
T 1zcj_A 113 STVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSAL 153 (463)
T ss_dssp TTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSS
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCc
Confidence 789999999997643 2232 2345688888877765
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=89.12 E-value=0.39 Score=45.77 Aligned_cols=88 Identities=14% Similarity=0.136 Sum_probs=46.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
.+|.|+|| |-+|+.++..|.....-++..+ +|+.. .+.+.. .+.... +.++ .+...++|+||.|+|.+..
T Consensus 118 k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~-~R~~~~a~~la~---~~~~~~---~~~~-~~~~~~aDiVInaTp~Gm~ 188 (277)
T 3don_A 118 AYILILGA-GGASKGIANELYKIVRPTLTVA-NRTMSRFNNWSL---NINKIN---LSHA-ESHLDEFDIIINTTPAGMN 188 (277)
T ss_dssp CCEEEECC-SHHHHHHHHHHHTTCCSCCEEE-CSCGGGGTTCCS---CCEEEC---HHHH-HHTGGGCSEEEECCC----
T ss_pred CEEEEECC-cHHHHHHHHHHHHCCCCEEEEE-eCCHHHHHHHHH---hccccc---HhhH-HHHhcCCCEEEECccCCCC
Confidence 47999995 8889999999987543345443 43321 111111 010000 1111 1123578999999998754
Q ss_pred HHHH---h--hCCCCCEEEEcCC
Q 015441 143 QEII---K--GLPKSLKIVDLSA 160 (406)
Q Consensus 143 ~~~~---~--~l~~G~~VIDlSa 160 (406)
.... + .+..+..|+|++.
T Consensus 189 ~~~~~~l~~~~l~~~~~V~D~vY 211 (277)
T 3don_A 189 GNTDSVISLNRLASHTLVSDIVY 211 (277)
T ss_dssp ---CCSSCCTTCCSSCEEEESCC
T ss_pred CCCcCCCCHHHcCCCCEEEEecC
Confidence 3321 1 2356778899874
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=89.07 E-value=0.68 Score=42.15 Aligned_cols=31 Identities=19% Similarity=0.131 Sum_probs=25.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||+|.+|+++++.|++.. .+++.+.
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~ 32 (257)
T 1fjh_A 2 SIIVISGCATGIGAATRKVLEAAG-HQIVGID 32 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEe
Confidence 479999999999999999998754 4655543
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=89.06 E-value=0.29 Score=47.24 Aligned_cols=71 Identities=18% Similarity=0.207 Sum_probs=40.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccCc---CCc--cccccccCccccCCCcccccCcccCCCCCEEEEcC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRK---AGQ--SIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCL 137 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~~---~G~--~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al 137 (406)
+||+|+|| |.+|..++-+|...+-+ |++.+ +... .|. .+....+.+ .+.. +..-+.+++.++|+|+.+.
T Consensus 1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~-Di~~~k~~g~a~dl~~~~~~~--~~~~-v~~~~~~a~~~aD~Vii~a 75 (310)
T 2xxj_A 1 MKVGIVGS-GMVGSATAYALALLGVAREVVLV-DLDRKLAQAHAEDILHATPFA--HPVW-VWAGSYGDLEGARAVVLAA 75 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEE-CSSHHHHHHHHHHHHTTGGGS--CCCE-EEECCGGGGTTEEEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEE-eCChhHHHHHHHHHHHhHhhc--CCeE-EEECCHHHhCCCCEEEECC
Confidence 48999997 99999999988865433 56555 3321 111 111111101 1111 1111344578999999988
Q ss_pred CC
Q 015441 138 PH 139 (406)
Q Consensus 138 ~~ 139 (406)
+.
T Consensus 76 g~ 77 (310)
T 2xxj_A 76 GV 77 (310)
T ss_dssp CC
T ss_pred CC
Confidence 64
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=88.95 E-value=0.62 Score=44.23 Aligned_cols=84 Identities=13% Similarity=0.122 Sum_probs=50.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
.+|.|+| +|-+|+.++..|...- .++..+ +|+.. .+.+. .+. .. ... .+++.++|+||.|+|.+..
T Consensus 119 k~vlvlG-aGGaaraia~~L~~~G-~~v~V~-nRt~~ka~~la----~~~---~~-~~~--~~~l~~~DiVInaTp~Gm~ 185 (269)
T 3phh_A 119 QNALILG-AGGSAKALACELKKQG-LQVSVL-NRSSRGLDFFQ----RLG---CD-CFM--EPPKSAFDLIINATSASLH 185 (269)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTT-CEEEEE-CSSCTTHHHHH----HHT---CE-EES--SCCSSCCSEEEECCTTCCC
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCC-CEEEEE-eCCHHHHHHHH----HCC---Ce-Eec--HHHhccCCEEEEcccCCCC
Confidence 5899999 5999999999998766 666544 44321 11111 111 00 111 1223478999999997743
Q ss_pred H------HHHh-hCCCCCEEEEcCC
Q 015441 143 Q------EIIK-GLPKSLKIVDLSA 160 (406)
Q Consensus 143 ~------~~~~-~l~~G~~VIDlSa 160 (406)
. +.+. .+..+..|+|+..
T Consensus 186 ~~~~l~~~~l~~~l~~~~~v~D~vY 210 (269)
T 3phh_A 186 NELPLNKEVLKGYFKEGKLAYDLAY 210 (269)
T ss_dssp CSCSSCHHHHHHHHHHCSEEEESCC
T ss_pred CCCCCChHHHHhhCCCCCEEEEeCC
Confidence 2 2111 2345778999874
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=88.84 E-value=0.48 Score=44.50 Aligned_cols=89 Identities=16% Similarity=0.288 Sum_probs=49.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccC--CCCCEEEEcCCCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCLPHG 140 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~al~~~ 140 (406)
.+|.|+|| |-+|+.+++.|.... .+++.+ +++.. .+.+...+... + .. ...+.+++ .++|+++.|+|.+
T Consensus 120 k~vlViGa-Gg~g~a~a~~L~~~G-~~V~v~-~R~~~~~~~la~~~~~~-~-~~---~~~~~~~~~~~~~DivVn~t~~~ 191 (271)
T 1nyt_A 120 LRILLIGA-GGASRGVLLPLLSLD-CAVTIT-NRTVSRAEELAKLFAHT-G-SI---QALSMDELEGHEFDLIINATSSG 191 (271)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT-CEEEEE-CSSHHHHHHHHHHTGGG-S-SE---EECCSGGGTTCCCSEEEECCSCG
T ss_pred CEEEEECC-cHHHHHHHHHHHHcC-CEEEEE-ECCHHHHHHHHHHhhcc-C-Ce---eEecHHHhccCCCCEEEECCCCC
Confidence 47999997 779999999998765 565544 43321 11111111100 0 00 00111112 4799999999976
Q ss_pred chHH---HHhh-CCCCCEEEEcCC
Q 015441 141 TTQE---IIKG-LPKSLKIVDLSA 160 (406)
Q Consensus 141 ~s~~---~~~~-l~~G~~VIDlSa 160 (406)
.... +.+. +..+..|+|++-
T Consensus 192 ~~~~~~~i~~~~l~~~~~v~D~~y 215 (271)
T 1nyt_A 192 ISGDIPAIPSSLIHPGIYCYDMFY 215 (271)
T ss_dssp GGTCCCCCCGGGCCTTCEEEESCC
T ss_pred CCCCCCCCCHHHcCCCCEEEEecc
Confidence 5422 1112 355778888754
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=88.79 E-value=0.46 Score=45.56 Aligned_cols=72 Identities=17% Similarity=0.240 Sum_probs=48.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc--c
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG--T 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~--~ 141 (406)
.++.|+|++|.+|+-+..+|.+. ..+++...+ +. .++ .+...++|+||.|+|.. +
T Consensus 162 k~vvVIG~s~iVG~p~A~lL~~~-gAtVtv~hs-~t--------------~~L-------~~~~~~ADIVI~Avg~p~~I 218 (285)
T 3l07_A 162 AYAVVVGASNVVGKPVSQLLLNA-KATVTTCHR-FT--------------TDL-------KSHTTKADILIVAVGKPNFI 218 (285)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHT-TCEEEEECT-TC--------------SSH-------HHHHTTCSEEEECCCCTTCB
T ss_pred CEEEEECCCchhHHHHHHHHHHC-CCeEEEEeC-Cc--------------hhH-------HHhcccCCEEEECCCCCCCC
Confidence 58999999999999999999875 345433322 10 011 11235789999999742 2
Q ss_pred hHHHHhhCCCCCEEEEcCCc
Q 015441 142 TQEIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 142 s~~~~~~l~~G~~VIDlSa~ 161 (406)
..+ .++.|..|||.+-+
T Consensus 219 ~~~---~vk~GavVIDvgi~ 235 (285)
T 3l07_A 219 TAD---MVKEGAVVIDVGIN 235 (285)
T ss_dssp CGG---GSCTTCEEEECCCE
T ss_pred CHH---HcCCCcEEEEeccc
Confidence 222 24679999999865
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=88.72 E-value=0.4 Score=45.33 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=26.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
++|.|.||||++|+.|++.|.+.. .+++.+.
T Consensus 4 ~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~ 34 (345)
T 2z1m_A 4 KRALITGIRGQDGAYLAKLLLEKG-YEVYGAD 34 (345)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEC
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEEE
Confidence 579999999999999999998753 5776664
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=88.59 E-value=0.22 Score=47.28 Aligned_cols=94 Identities=14% Similarity=0.159 Sum_probs=51.7
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccC-CCCCEEEEcCCCc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADF-SNVDAVFCCLPHG 140 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~-~~vDvVF~al~~~ 140 (406)
|++||+|+| .|.+|..+...|.+.. .++..+. ++..+..+......+ ... +.....+.. .++|+||+|++..
T Consensus 1 M~mkI~iiG-aGa~G~~~a~~L~~~g-~~V~~~~-r~~~~~~~~~~~g~~---~~~-~~~~~~~~~~~~~D~vilavk~~ 73 (294)
T 3g17_A 1 MSLSVAIIG-PGAVGTTIAYELQQSL-PHTTLIG-RHAKTITYYTVPHAP---AQD-IVVKGYEDVTNTFDVIIIAVKTH 73 (294)
T ss_dssp --CCEEEEC-CSHHHHHHHHHHHHHC-TTCEEEE-SSCEEEEEESSTTSC---CEE-EEEEEGGGCCSCEEEEEECSCGG
T ss_pred CCcEEEEEC-CCHHHHHHHHHHHHCC-CeEEEEE-eccCcEEEEecCCee---ccc-eecCchHhcCCCCCEEEEeCCcc
Confidence 457999999 8999999999887422 2444443 332221111111000 000 111012223 5789999999988
Q ss_pred chHHHHhhC----CCCCEEEEcCCcc
Q 015441 141 TTQEIIKGL----PKSLKIVDLSADF 162 (406)
Q Consensus 141 ~s~~~~~~l----~~G~~VIDlSa~f 162 (406)
...+.++.+ ..+..||.+..-+
T Consensus 74 ~~~~~l~~l~~~l~~~~~iv~~~nGi 99 (294)
T 3g17_A 74 QLDAVIPHLTYLAHEDTLIILAQNGY 99 (294)
T ss_dssp GHHHHGGGHHHHEEEEEEEEECCSSC
T ss_pred CHHHHHHHHHHhhCCCCEEEEeccCc
Confidence 776666543 3456777766544
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=88.43 E-value=0.34 Score=44.52 Aligned_cols=35 Identities=29% Similarity=0.447 Sum_probs=25.9
Q ss_pred cCCccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 60 SEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 60 ~~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
..|..+|.|.||+|.+|+++++.|.++- .+++.+.
T Consensus 19 ~~m~k~vlITGas~gIG~~la~~l~~~G-~~V~~~~ 53 (251)
T 3orf_A 19 SHMSKNILVLGGSGALGAEVVKFFKSKS-WNTISID 53 (251)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred cccCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEe
Confidence 3445689999999999999999998764 4555553
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=88.22 E-value=0.45 Score=45.64 Aligned_cols=75 Identities=17% Similarity=0.274 Sum_probs=49.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc--c
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG--T 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~--~ 141 (406)
.++.|+|++|.+|+-+..+|.+. ..++....+ +. .++ .+...++|+||.++|.. +
T Consensus 161 k~vvVvGrs~iVG~p~A~lL~~~-gAtVtv~h~-~t--------------~~L-------~~~~~~ADIVI~Avg~p~~I 217 (285)
T 3p2o_A 161 KDAVIIGASNIVGRPMATMLLNA-GATVSVCHI-KT--------------KDL-------SLYTRQADLIIVAAGCVNLL 217 (285)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHT-TCEEEEECT-TC--------------SCH-------HHHHTTCSEEEECSSCTTCB
T ss_pred CEEEEECCCchHHHHHHHHHHHC-CCeEEEEeC-Cc--------------hhH-------HHHhhcCCEEEECCCCCCcC
Confidence 58999999999999999999875 345443322 11 011 11235789999999742 2
Q ss_pred hHHHHhhCCCCCEEEEcCCcccCC
Q 015441 142 TQEIIKGLPKSLKIVDLSADFRLR 165 (406)
Q Consensus 142 s~~~~~~l~~G~~VIDlSa~fRl~ 165 (406)
..++ ++.|..|||.+.. |.+
T Consensus 218 ~~~~---vk~GavVIDVgi~-~~~ 237 (285)
T 3p2o_A 218 RSDM---VKEGVIVVDVGIN-RLE 237 (285)
T ss_dssp CGGG---SCTTEEEEECCCE-ECT
T ss_pred CHHH---cCCCeEEEEeccC-ccc
Confidence 2222 4679999999875 443
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=88.18 E-value=0.32 Score=46.45 Aligned_cols=90 Identities=12% Similarity=0.162 Sum_probs=48.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccCccccCCCcccccCcccC-CCCCEEEEcCCCcc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAVKDADF-SNVDAVFCCLPHGT 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~l~~~~~~~~~~~~~~~~-~~vDvVF~al~~~~ 141 (406)
.+|.|+|| |-+|+.++..|......++..+ +|+. ..+.+...+... + .+. .... +++ .++|+||.|+|.+.
T Consensus 127 k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~-~R~~~~a~~la~~~~~~-~-~~~-~~~~--~~l~~~aDiIInaTp~gm 199 (281)
T 3o8q_A 127 ATILLIGA-GGAARGVLKPLLDQQPASITVT-NRTFAKAEQLAELVAAY-G-EVK-AQAF--EQLKQSYDVIINSTSASL 199 (281)
T ss_dssp CEEEEECC-SHHHHHHHHHHHTTCCSEEEEE-ESSHHHHHHHHHHHGGG-S-CEE-EEEG--GGCCSCEEEEEECSCCCC
T ss_pred CEEEEECc-hHHHHHHHHHHHhcCCCeEEEE-ECCHHHHHHHHHHhhcc-C-Cee-EeeH--HHhcCCCCEEEEcCcCCC
Confidence 57999995 7899999999987654465444 4332 111111111100 0 010 1111 112 57899999999886
Q ss_pred hHHHH--h--hCCCCCEEEEcCC
Q 015441 142 TQEII--K--GLPKSLKIVDLSA 160 (406)
Q Consensus 142 s~~~~--~--~l~~G~~VIDlSa 160 (406)
..+.. + .+..+..|+|+..
T Consensus 200 ~~~~~~l~~~~l~~~~~V~DlvY 222 (281)
T 3o8q_A 200 DGELPAIDPVIFSSRSVCYDMMY 222 (281)
T ss_dssp ----CSCCGGGEEEEEEEEESCC
T ss_pred CCCCCCCCHHHhCcCCEEEEecC
Confidence 53321 1 1345677888864
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=88.03 E-value=0.44 Score=45.46 Aligned_cols=73 Identities=11% Similarity=0.271 Sum_probs=49.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc--c
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG--T 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~--~ 141 (406)
.++.|+|+++.+|+-+.++|.+. ..+++...++ . .++ .+...++|+||.++|.. +
T Consensus 151 k~vvVvG~s~iVG~plA~lL~~~-gAtVtv~~~~-t--------------~~L-------~~~~~~ADIVI~Avg~p~~I 207 (276)
T 3ngx_A 151 NTVTIVNRSPVVGRPLSMMLLNR-NYTVSVCHSK-T--------------KDI-------GSMTRSSKIVVVAVGRPGFL 207 (276)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHT-TCEEEEECTT-C--------------SCH-------HHHHHHSSEEEECSSCTTCB
T ss_pred CEEEEEcCChHHHHHHHHHHHHC-CCeEEEEeCC-c--------------ccH-------HHhhccCCEEEECCCCCccc
Confidence 58999999999999999999875 4455444321 0 011 11224689999999852 2
Q ss_pred hHHHHhhCCCCCEEEEcCCcc
Q 015441 142 TQEIIKGLPKSLKIVDLSADF 162 (406)
Q Consensus 142 s~~~~~~l~~G~~VIDlSa~f 162 (406)
..++ ++.|..|||.+.+.
T Consensus 208 ~~~~---vk~GavVIDvgi~~ 225 (276)
T 3ngx_A 208 NREM---VTPGSVVIDVGINY 225 (276)
T ss_dssp CGGG---CCTTCEEEECCCEE
T ss_pred cHhh---ccCCcEEEEeccCc
Confidence 2222 46799999998764
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=87.96 E-value=0.56 Score=44.49 Aligned_cols=91 Identities=15% Similarity=0.120 Sum_probs=49.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
.++.|+|| |-+|+.++..|......++.. .+|+.. .+.+...+.. .......+.++. . .++|+|+.|+|.+..
T Consensus 121 k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i-~~R~~~~a~~la~~~~~-~~~~~~~~~~l~--~-~~~DivInaTp~gm~ 194 (272)
T 3pwz_A 121 RRVLLLGA-GGAVRGALLPFLQAGPSELVI-ANRDMAKALALRNELDH-SRLRISRYEALE--G-QSFDIVVNATSASLT 194 (272)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTCCSEEEE-ECSCHHHHHHHHHHHCC-TTEEEECSGGGT--T-CCCSEEEECSSGGGG
T ss_pred CEEEEECc-cHHHHHHHHHHHHcCCCEEEE-EeCCHHHHHHHHHHhcc-CCeeEeeHHHhc--c-cCCCEEEECCCCCCC
Confidence 57999995 788999999998764345544 444321 1111111110 000000011111 1 578999999998764
Q ss_pred HHH---Hh-hCCCCCEEEEcCC
Q 015441 143 QEI---IK-GLPKSLKIVDLSA 160 (406)
Q Consensus 143 ~~~---~~-~l~~G~~VIDlSa 160 (406)
.+. .. .+..+..|+|+..
T Consensus 195 ~~~~~i~~~~l~~~~~V~DlvY 216 (272)
T 3pwz_A 195 ADLPPLPADVLGEAALAYELAY 216 (272)
T ss_dssp TCCCCCCGGGGTTCSEEEESSC
T ss_pred CCCCCCCHHHhCcCCEEEEeec
Confidence 321 11 2356778888764
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=87.90 E-value=0.79 Score=47.28 Aligned_cols=86 Identities=8% Similarity=0.069 Sum_probs=53.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCC--cc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH--GT 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~--~~ 141 (406)
.+|+|+| .|.+|+.+.+.|..+. +++... ++... +...... .+.. ...+ ++.+.++|+|+.+++. -+
T Consensus 278 ktVgIIG-~G~IG~~vA~~l~~~G-~~V~v~-d~~~~-~~~~a~~---~G~~---~~~l-~ell~~aDiVi~~~~t~~lI 346 (494)
T 3d64_A 278 KIAVVAG-YGDVGKGCAQSLRGLG-ATVWVT-EIDPI-CALQAAM---EGYR---VVTM-EYAADKADIFVTATGNYHVI 346 (494)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHTTT-CEEEEE-CSCHH-HHHHHHT---TTCE---ECCH-HHHTTTCSEEEECSSSSCSB
T ss_pred CEEEEEc-cCHHHHHHHHHHHHCC-CEEEEE-eCChH-hHHHHHH---cCCE---eCCH-HHHHhcCCEEEECCCccccc
Confidence 5799999 9999999999998774 666554 32211 1001000 0101 1111 2335689999999742 24
Q ss_pred hHHHHhhCCCCCEEEEcCC
Q 015441 142 TQEIIKGLPKSLKIVDLSA 160 (406)
Q Consensus 142 s~~~~~~l~~G~~VIDlSa 160 (406)
..+..+.++.|..+||.+.
T Consensus 347 ~~~~l~~MK~gAilINvgr 365 (494)
T 3d64_A 347 NHDHMKAMRHNAIVCNIGH 365 (494)
T ss_dssp CHHHHHHCCTTEEEEECSS
T ss_pred CHHHHhhCCCCcEEEEcCC
Confidence 4566677788999998765
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=87.78 E-value=0.46 Score=43.92 Aligned_cols=31 Identities=16% Similarity=0.153 Sum_probs=25.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||+|.+|+++++.|++.. .+++.+.
T Consensus 22 k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~ 52 (253)
T 2nm0_A 22 RSVLVTGGNRGIGLAIARAFADAG-DKVAITY 52 (253)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEe
Confidence 479999999999999999998764 4555543
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=87.68 E-value=0.7 Score=44.35 Aligned_cols=91 Identities=13% Similarity=0.203 Sum_probs=52.0
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCcccc---CCCcccccCcccCCCCCEEEEcCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQ---DLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~---~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
-.||+|+| .|..|..+.+.|+ . .++++........-++.... +... .+.... +..+..++|+||.|+|.
T Consensus 12 ~~~V~vIG-~G~MG~~iA~~la-a-G~~V~v~d~~~~~~~~~~~~---l~~~~~~~i~~~~--~~~~~~~aDlVieavpe 83 (293)
T 1zej_A 12 HMKVFVIG-AGLMGRGIAIAIA-S-KHEVVLQDVSEKALEAAREQ---IPEELLSKIEFTT--TLEKVKDCDIVMEAVFE 83 (293)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHH-T-TSEEEEECSCHHHHHHHHHH---SCGGGGGGEEEES--SCTTGGGCSEEEECCCS
T ss_pred CCeEEEEe-eCHHHHHHHHHHH-c-CCEEEEEECCHHHHHHHHHH---HHHHHhCCeEEeC--CHHHHcCCCEEEEcCcC
Confidence 36899999 8999999999998 5 56766553211110000000 0000 010011 12235789999999998
Q ss_pred cchH--HHH---hhCCCCCEEEEcCCcc
Q 015441 140 GTTQ--EII---KGLPKSLKIVDLSADF 162 (406)
Q Consensus 140 ~~s~--~~~---~~l~~G~~VIDlSa~f 162 (406)
.... .+. ..+ .|+.++++++..
T Consensus 84 ~~~vk~~l~~~l~~~-~~~IlasntSti 110 (293)
T 1zej_A 84 DLNTKVEVLREVERL-TNAPLCSNTSVI 110 (293)
T ss_dssp CHHHHHHHHHHHHTT-CCSCEEECCSSS
T ss_pred CHHHHHHHHHHHhcC-CCCEEEEECCCc
Confidence 8752 232 234 777777666554
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=87.66 E-value=0.29 Score=44.48 Aligned_cols=75 Identities=16% Similarity=0.153 Sum_probs=40.0
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-ccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
..+|.|+|+ |.+|+.+++.|.... . ++.+ ++...- +.+..-...+.+ +......+....+.++|.|+.|++...
T Consensus 9 ~~~viI~G~-G~~G~~la~~L~~~g-~-v~vi-d~~~~~~~~~~~~~~~i~g-d~~~~~~l~~a~i~~ad~vi~~~~~d~ 83 (234)
T 2aef_A 9 SRHVVICGW-SESTLECLRELRGSE-V-FVLA-EDENVRKKVLRSGANFVHG-DPTRVSDLEKANVRGARAVIVDLESDS 83 (234)
T ss_dssp -CEEEEESC-CHHHHHHHHHSTTSE-E-EEEE-SCGGGHHHHHHTTCEEEES-CTTCHHHHHHTTCTTCSEEEECCSCHH
T ss_pred CCEEEEECC-ChHHHHHHHHHHhCC-e-EEEE-ECCHHHHHHHhcCCeEEEc-CCCCHHHHHhcCcchhcEEEEcCCCcH
Confidence 358999995 999999999998653 3 4444 332210 011000000111 111111121223568999999999764
Q ss_pred h
Q 015441 142 T 142 (406)
Q Consensus 142 s 142 (406)
.
T Consensus 84 ~ 84 (234)
T 2aef_A 84 E 84 (234)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=87.65 E-value=0.6 Score=42.12 Aligned_cols=32 Identities=22% Similarity=0.244 Sum_probs=25.6
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|.+|.|.||+|++|+.+++.|+++. .+++.+.
T Consensus 1 Mk~vlVtGasg~iG~~l~~~L~~~g-~~V~~~~ 32 (255)
T 2dkn_A 1 MSVIAITGSASGIGAALKELLARAG-HTVIGID 32 (255)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred CcEEEEeCCCcHHHHHHHHHHHhCC-CEEEEEe
Confidence 3579999999999999999998753 5666554
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=87.40 E-value=0.52 Score=42.92 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=26.3
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEE
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l 94 (406)
++.++.|.||+|.+|+++.+.|+++....++..
T Consensus 3 ~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~ 35 (244)
T 4e4y_A 3 AMANYLVTGGSKGIGKAVVELLLQNKNHTVINI 35 (244)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEE
T ss_pred CCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEe
Confidence 345799999999999999999987555555544
|
| >3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B* | Back alignment and structure |
|---|
Probab=87.37 E-value=0.97 Score=44.26 Aligned_cols=100 Identities=8% Similarity=0.112 Sum_probs=61.9
Q ss_pred CCccEEEEECcccHHHHHHHHH--HHcCCCceEEEEeccCcCC--ccccccccCccccCCCcccccCc--ccCCCCCEEE
Q 015441 61 EKQVRIGLLGASGYTGAEIVRL--LANHPYFGIKLMTADRKAG--QSIGSVFPHLISQDLPTMVAVKD--ADFSNVDAVF 134 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrl--L~~hp~~elv~l~s~~~~G--~~i~~v~p~l~~~~~~~~~~~~~--~~~~~vDvVF 134 (406)
++.+||.|.|++|..++.+++. +.+.++.++++..+.+..| +.+..-++++ .++.+..+++ +...++|+++
T Consensus 8 ~~~tkviV~G~~Gk~~~~ml~~~~~~~r~~~~vVagV~P~~~g~~~~v~~G~~~~---Gvpvy~sv~ea~~~~p~~DlaV 84 (334)
T 3mwd_B 8 SRHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGHKEI---LIPVFKNMADAMRKHPEVDVLI 84 (334)
T ss_dssp CTTCCEEEESCCHHHHHHHHHHHHHTTCSSCSEEEEECTTSCSEEEEEEETTEEE---EEEEESSHHHHHHHCTTCCEEE
T ss_pred CCCCeEEEECCchHHHHHHHHhcccccCCCceEEEEEcCCCCCccceEeccCccC---CceeeCCHHHHhhcCCCCcEEE
Confidence 4457999999999988877776 5567888999998877664 5442111111 1232322211 1112689999
Q ss_pred EcCCCcchH-HHHhhCC-CCCE-EEEcCCccc
Q 015441 135 CCLPHGTTQ-EIIKGLP-KSLK-IVDLSADFR 163 (406)
Q Consensus 135 ~al~~~~s~-~~~~~l~-~G~~-VIDlSa~fR 163 (406)
.++|..... ...+++. +|++ ||=++.-|.
T Consensus 85 i~vp~~~a~~ai~ea~~~~Gv~~vViiT~G~~ 116 (334)
T 3mwd_B 85 NFASLRSAYDSTMETMNYAQIRTIAIIAEGIP 116 (334)
T ss_dssp ECCCTTTHHHHHHHHTTSTTCCEEEECCSCCC
T ss_pred EecCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 999987664 4556775 7763 332566553
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=87.22 E-value=0.49 Score=43.94 Aligned_cols=31 Identities=16% Similarity=0.081 Sum_probs=25.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||+|.+|+++++.|++.. .+++.+.
T Consensus 9 k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~ 39 (264)
T 2dtx_A 9 KVVIVTGASMGIGRAIAERFVDEG-SKVIDLS 39 (264)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEe
Confidence 469999999999999999998764 4665554
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=87.08 E-value=0.61 Score=46.66 Aligned_cols=94 Identities=18% Similarity=0.302 Sum_probs=52.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-ccccccccCccccCC--------------Cc-c-----ccc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-QSIGSVFPHLISQDL--------------PT-M-----VAV 122 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-~~i~~v~p~l~~~~~--------------~~-~-----~~~ 122 (406)
.+|+|+| .|-+|+..++.+.... .+++.+ +++..- ..+.+....+...+. .. . ..+
T Consensus 173 ~~V~ViG-aG~iG~~aa~~a~~~G-a~V~v~-D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l 249 (401)
T 1x13_A 173 AKVMVIG-AGVAGLAAIGAANSLG-AIVRAF-DTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELF 249 (401)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTT-CEEEEE-CSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHH
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCC-CEEEEE-cCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHH
Confidence 5899999 6999999999998776 465444 433210 111110000000000 00 0 001
Q ss_pred CcccCCCCCEEEEc--CC-----CcchHHHHhhCCCCCEEEEcCCc
Q 015441 123 KDADFSNVDAVFCC--LP-----HGTTQEIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 123 ~~~~~~~vDvVF~a--l~-----~~~s~~~~~~l~~G~~VIDlSa~ 161 (406)
.+.+.++|+||.| .| .-++.+.++.+..|.+|||++.+
T Consensus 250 -~e~~~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva~~ 294 (401)
T 1x13_A 250 -AAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLAAQ 294 (401)
T ss_dssp -HHHHHHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGG
T ss_pred -HHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEcCC
Confidence 1122478999999 32 22456666777789999999864
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=86.97 E-value=0.55 Score=45.88 Aligned_cols=83 Identities=13% Similarity=0.209 Sum_probs=50.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.+|+|+| .|.+|+++.+.+..+ .+++.+.. +.. .....+ .+ . ....+ ++.+..+|+|.+++|-...
T Consensus 142 ~tvGIiG-~G~IG~~va~~~~~f-g~~v~~~d-~~~-~~~~~~-----~~--~-~~~~l-~ell~~sDivslh~Plt~~T 208 (334)
T 3kb6_A 142 LTLGVIG-TGRIGSRVAMYGLAF-GMKVLCYD-VVK-REDLKE-----KG--C-VYTSL-DELLKESDVISLHVPYTKET 208 (334)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEC-SSC-CHHHHH-----TT--C-EECCH-HHHHHHCSEEEECCCCCTTT
T ss_pred cEEEEEC-cchHHHHHHHhhccc-CceeeecC-Ccc-chhhhh-----cC--c-eecCH-HHHHhhCCEEEEcCCCChhh
Confidence 4799999 999999999999876 46666553 211 111110 00 0 01112 2335689999999884332
Q ss_pred -----HHHHhhCCCCCEEEEcCC
Q 015441 143 -----QEIIKGLPKSLKIVDLSA 160 (406)
Q Consensus 143 -----~~~~~~l~~G~~VIDlSa 160 (406)
++....++.|..+| |.|
T Consensus 209 ~~li~~~~l~~mk~~a~lI-N~a 230 (334)
T 3kb6_A 209 HHMINEERISLMKDGVYLI-NTA 230 (334)
T ss_dssp TTCBCHHHHHHSCTTEEEE-ECS
T ss_pred ccCcCHHHHhhcCCCeEEE-ecC
Confidence 44555567788888 444
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=86.90 E-value=0.54 Score=45.43 Aligned_cols=74 Identities=19% Similarity=0.264 Sum_probs=49.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.++.|+|++|.+|+-+.++|.+. ..++... .++.. ++. + .+...++|+||.|+|..
T Consensus 166 k~vvVIG~s~iVG~p~A~lL~~~-gAtVtv~-~~~T~--------------~l~-l----~~~~~~ADIVI~Avg~p--- 221 (300)
T 4a26_A 166 KRAVVLGRSNIVGAPVAALLMKE-NATVTIV-HSGTS--------------TED-M----IDYLRTADIVIAAMGQP--- 221 (300)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHT-TCEEEEE-CTTSC--------------HHH-H----HHHHHTCSEEEECSCCT---
T ss_pred CEEEEECCCchHHHHHHHHHHHC-CCeEEEE-eCCCC--------------Cch-h----hhhhccCCEEEECCCCC---
Confidence 58999999999999999999875 3454433 32110 110 0 02235789999999853
Q ss_pred HHHh--hCCCCCEEEEcCCc
Q 015441 144 EIIK--GLPKSLKIVDLSAD 161 (406)
Q Consensus 144 ~~~~--~l~~G~~VIDlSa~ 161 (406)
++.+ .+..|..|||.+..
T Consensus 222 ~~I~~~~vk~GavVIDvgi~ 241 (300)
T 4a26_A 222 GYVKGEWIKEGAAVVDVGTT 241 (300)
T ss_dssp TCBCGGGSCTTCEEEECCCE
T ss_pred CCCcHHhcCCCcEEEEEecc
Confidence 2222 24679999999875
|
| >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 | Back alignment and structure |
|---|
Probab=86.84 E-value=0.79 Score=46.66 Aligned_cols=87 Identities=18% Similarity=0.242 Sum_probs=55.9
Q ss_pred cEEEEECccc---HHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 64 VRIGLLGASG---YTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 64 ikVaIvGATG---~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
.+|+|+|||+ ..|..+++.|.++....+..++-+ +..+. + ++.+..++ +....+|+++.|.|..
T Consensus 9 ~siAVvGas~~~~~~g~~v~~~l~~~g~~~v~pVnP~---~~~i~-------G--~~~y~sl~-~lp~~~Dlavi~vp~~ 75 (457)
T 2csu_A 9 KGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIK---EEEVQ-------G--VKAYKSVK-DIPDEIDLAIIVVPKR 75 (457)
T ss_dssp SEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSS---CSEET-------T--EECBSSTT-SCSSCCSEEEECSCHH
T ss_pred CeEEEECcCCCCCchHHHHHHHHHHcCCCEEEEECCC---CCeEC-------C--EeccCCHH-HcCCCCCEEEEecCHH
Confidence 5799999994 679999999987765566666543 22221 1 11122221 1113689999999998
Q ss_pred chHHHHhhC-CCCCE-EEEcCCccc
Q 015441 141 TTQEIIKGL-PKSLK-IVDLSADFR 163 (406)
Q Consensus 141 ~s~~~~~~l-~~G~~-VIDlSa~fR 163 (406)
...+.+..+ ++|++ ||=+++-|.
T Consensus 76 ~~~~~v~e~~~~Gi~~vv~~s~G~~ 100 (457)
T 2csu_A 76 FVKDTLIQCGEKGVKGVVIITAGFG 100 (457)
T ss_dssp HHHHHHHHHHHHTCCEEEECCCSST
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCC
Confidence 888877654 66764 344676663
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=86.82 E-value=0.84 Score=43.77 Aligned_cols=75 Identities=17% Similarity=0.184 Sum_probs=50.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc--c
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG--T 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~--~ 141 (406)
.++.|+|++|.+|+-+..+|.+. ..++....++. .++ .+...++|+||.++|.. +
T Consensus 162 k~vvVvGrs~iVG~plA~lL~~~-gAtVtv~hs~T---------------~~L-------~~~~~~ADIVI~Avg~p~~I 218 (286)
T 4a5o_A 162 MDAVVVGASNIVGRPMALELLLG-GCTVTVTHRFT---------------RDL-------ADHVSRADLVVVAAGKPGLV 218 (286)
T ss_dssp CEEEEECTTSTTHHHHHHHHHHT-TCEEEEECTTC---------------SCH-------HHHHHTCSEEEECCCCTTCB
T ss_pred CEEEEECCCchhHHHHHHHHHHC-CCeEEEEeCCC---------------cCH-------HHHhccCCEEEECCCCCCCC
Confidence 58999999999999999999875 34554443211 011 11235789999999742 2
Q ss_pred hHHHHhhCCCCCEEEEcCCcccCC
Q 015441 142 TQEIIKGLPKSLKIVDLSADFRLR 165 (406)
Q Consensus 142 s~~~~~~l~~G~~VIDlSa~fRl~ 165 (406)
..++ ++.|..|||.+.+ |.+
T Consensus 219 ~~~~---vk~GavVIDvgi~-~~~ 238 (286)
T 4a5o_A 219 KGEW---IKEGAIVIDVGIN-RQA 238 (286)
T ss_dssp CGGG---SCTTCEEEECCSC-SSC
T ss_pred CHHH---cCCCeEEEEeccc-ccc
Confidence 2222 4679999999875 443
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=86.80 E-value=0.47 Score=45.56 Aligned_cols=75 Identities=17% Similarity=0.249 Sum_probs=49.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|.|+|+++.||+-+.++|.+. ...+....++. .++ .+...++|+||.|.+..
T Consensus 160 k~vvVIG~s~iVG~p~A~lL~~~-gAtVtv~hs~t---------------~~L-------~~~~~~ADIVI~Avg~p--- 213 (288)
T 1b0a_A 160 LNAVVIGASNIVGRPMSMELLLA-GCTTTVTHRFT---------------KNL-------RHHVENADLLIVAVGKP--- 213 (288)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTT-TCEEEEECSSC---------------SCH-------HHHHHHCSEEEECSCCT---
T ss_pred CEEEEECCChHHHHHHHHHHHHC-CCeEEEEeCCc---------------hhH-------HHHhccCCEEEECCCCc---
Confidence 58999999989999999999875 34544442211 111 11224689999999843
Q ss_pred HHHhh--CCCCCEEEEcCCcccCC
Q 015441 144 EIIKG--LPKSLKIVDLSADFRLR 165 (406)
Q Consensus 144 ~~~~~--l~~G~~VIDlSa~fRl~ 165 (406)
++.+. ++.|..|||.+-+ |.+
T Consensus 214 ~lI~~~~vk~GavVIDVgi~-r~~ 236 (288)
T 1b0a_A 214 GFIPGDWIKEGAIVIDVGIN-RLE 236 (288)
T ss_dssp TCBCTTTSCTTCEEEECCCE-ECT
T ss_pred CcCCHHHcCCCcEEEEccCC-ccC
Confidence 22321 4679999999875 443
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=86.71 E-value=1 Score=43.53 Aligned_cols=72 Identities=15% Similarity=0.195 Sum_probs=49.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc--c
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG--T 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~--~ 141 (406)
.+|.|+|+++.+|+-+.++|.+.- .++....+ +. .++ .+...++|+||.|.+.. +
T Consensus 166 k~vvVIG~s~iVG~p~A~lL~~~g-AtVtv~hs-~t--------------~~L-------~~~~~~ADIVI~Avg~p~~I 222 (301)
T 1a4i_A 166 RHAVVVGRSKIVGAPMHDLLLWNN-ATVTTCHS-KT--------------AHL-------DEEVNKGDILVVATGQPEMV 222 (301)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTT-CEEEEECT-TC--------------SSH-------HHHHTTCSEEEECCCCTTCB
T ss_pred CEEEEECCCchHHHHHHHHHHhCC-CeEEEEEC-Cc--------------ccH-------HHHhccCCEEEECCCCcccC
Confidence 589999988899999999998753 45443321 10 111 12235789999999853 2
Q ss_pred hHHHHhhCCCCCEEEEcCCc
Q 015441 142 TQEIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 142 s~~~~~~l~~G~~VIDlSa~ 161 (406)
..++ ++.|..|||.+-+
T Consensus 223 ~~~~---vk~GavVIDVgi~ 239 (301)
T 1a4i_A 223 KGEW---IKPGAIVIDCGIN 239 (301)
T ss_dssp CGGG---SCTTCEEEECCCB
T ss_pred CHHH---cCCCcEEEEccCC
Confidence 2233 4679999999886
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=86.40 E-value=0.66 Score=45.04 Aligned_cols=31 Identities=26% Similarity=0.573 Sum_probs=25.9
Q ss_pred cEEEEECcccHHHHHHHHHHH-cCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLA-NHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~-~hp~~elv~l~ 95 (406)
|+|.|.||||++|+.|++.|+ +.. .+++.+.
T Consensus 3 m~vlVTGatG~iG~~l~~~L~~~~g-~~V~~~~ 34 (397)
T 1gy8_A 3 MRVLVCGGAGYIGSHFVRALLRDTN-HSVVIVD 34 (397)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCC-CEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHhCC-CEEEEEe
Confidence 389999999999999999998 654 5777664
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=86.33 E-value=0.74 Score=47.33 Aligned_cols=86 Identities=12% Similarity=0.096 Sum_probs=51.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCC--cc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH--GT 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~--~~ 141 (406)
.+|+|+| .|.+|+.+++.|..+ .+++.... +... +...... .+.. ...+ ++.+.++|+|+.|+.. -+
T Consensus 258 ktVgIIG-~G~IG~~vA~~l~~~-G~~Viv~d-~~~~-~~~~a~~---~g~~---~~~l-~ell~~aDiVi~~~~t~~lI 326 (479)
T 1v8b_A 258 KIVVICG-YGDVGKGCASSMKGL-GARVYITE-IDPI-CAIQAVM---EGFN---VVTL-DEIVDKGDFFITCTGNVDVI 326 (479)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHH-TCEEEEEC-SCHH-HHHHHHT---TTCE---ECCH-HHHTTTCSEEEECCSSSSSB
T ss_pred CEEEEEe-eCHHHHHHHHHHHhC-cCEEEEEe-CChh-hHHHHHH---cCCE---ecCH-HHHHhcCCEEEECCChhhhc
Confidence 5799999 999999999999866 35665543 2211 0000000 0100 1111 2335689999999642 23
Q ss_pred hHHHHhhCCCCCEEEEcCC
Q 015441 142 TQEIIKGLPKSLKIVDLSA 160 (406)
Q Consensus 142 s~~~~~~l~~G~~VIDlSa 160 (406)
..+..+.++.|..+||.+.
T Consensus 327 ~~~~l~~MK~gailiNvgr 345 (479)
T 1v8b_A 327 KLEHLLKMKNNAVVGNIGH 345 (479)
T ss_dssp CHHHHTTCCTTCEEEECSS
T ss_pred CHHHHhhcCCCcEEEEeCC
Confidence 4555566678999998764
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=86.02 E-value=0.91 Score=43.33 Aligned_cols=75 Identities=16% Similarity=0.215 Sum_probs=41.2
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCC-ceEEEEeccCc--C-Cc--cccccccCccccCCCcccccCcccCCCCCEEEEc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPY-FGIKLMTADRK--A-GQ--SIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCC 136 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~-~elv~l~s~~~--~-G~--~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~a 136 (406)
|+||+|+| .|.+|..++..|..... .+++.+ ++.. . +. .+....+ +...... ....+.+.+.++|+||.|
T Consensus 1 m~kI~VIG-aG~~G~~la~~L~~~g~~~~V~l~-d~~~~~~~~~~~~l~~~~~-~~~~~~~-~~~~d~~~~~~aDvViia 76 (309)
T 1hyh_A 1 ARKIGIIG-LGNVGAAVAHGLIAQGVADDYVFI-DANEAKVKADQIDFQDAMA-NLEAHGN-IVINDWAALADADVVIST 76 (309)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEE-CSSHHHHHHHHHHHHHHGG-GSSSCCE-EEESCGGGGTTCSEEEEC
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEE-cCCHHHHHHHHHHHHhhhh-hcCCCeE-EEeCCHHHhCCCCEEEEe
Confidence 36899999 89999999998875432 355544 3321 0 10 0110000 0011111 101123446789999999
Q ss_pred CCCcc
Q 015441 137 LPHGT 141 (406)
Q Consensus 137 l~~~~ 141 (406)
++...
T Consensus 77 v~~~~ 81 (309)
T 1hyh_A 77 LGNIK 81 (309)
T ss_dssp CSCGG
T ss_pred cCCcc
Confidence 98644
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=85.73 E-value=1.3 Score=43.72 Aligned_cols=94 Identities=18% Similarity=0.252 Sum_probs=51.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-ccccccccCcc---cc-------------CCC-c-----cc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-QSIGSVFPHLI---SQ-------------DLP-T-----MV 120 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-~~i~~v~p~l~---~~-------------~~~-~-----~~ 120 (406)
.+|+|+| .|-+|+..++.+.... .++ .+.+++..- ....+....+. .. .+. . ..
T Consensus 173 ~~V~ViG-aG~iG~~aa~~a~~~G-a~V-~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 249 (384)
T 1l7d_A 173 ARVLVFG-VGVAGLQAIATAKRLG-AVV-MATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE 249 (384)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTT-CEE-EEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCC-CEE-EEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHH
Confidence 5899999 6999999999998776 464 444443211 11111000000 00 000 0 00
Q ss_pred ccCcccCCCCCEEEEcC---CC----cchHHHHhhCCCCCEEEEcCCc
Q 015441 121 AVKDADFSNVDAVFCCL---PH----GTTQEIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 121 ~~~~~~~~~vDvVF~al---~~----~~s~~~~~~l~~G~~VIDlSa~ 161 (406)
.+ .+.+.++|+||.|+ +. -++.+..+.+..|.+|||++.+
T Consensus 250 ~l-~~~~~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva~~ 296 (384)
T 1l7d_A 250 AV-LKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVE 296 (384)
T ss_dssp HH-HHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGG
T ss_pred HH-HHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEecC
Confidence 01 11235799999999 32 1245556666778999999854
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=85.50 E-value=0.55 Score=45.31 Aligned_cols=73 Identities=21% Similarity=0.246 Sum_probs=39.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccCc---CCc--cccccccCccccCCCcccccCcccCCCCCEEEEcC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRK---AGQ--SIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCL 137 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~~---~G~--~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al 137 (406)
+||+|+|| |.+|..++..|...... +++.+ ++.. .+. .+....+.+. ... +...+.+++.++|+||.|.
T Consensus 1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~-D~~~~~~~~~~~~l~~~~~~~~--~~~-i~~~d~~~~~~aDvViiav 75 (319)
T 1a5z_A 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLI-DVDKKRAEGDALDLIHGTPFTR--RAN-IYAGDYADLKGSDVVIVAA 75 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEE-CSSHHHHHHHHHHHHHHGGGSC--CCE-EEECCGGGGTTCSEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEE-eCChHHHHHHHHHHHhhhhhcC--CcE-EEeCCHHHhCCCCEEEEcc
Confidence 48999996 99999999988753322 55544 3321 010 0010000000 000 1111234567899999999
Q ss_pred CCcc
Q 015441 138 PHGT 141 (406)
Q Consensus 138 ~~~~ 141 (406)
+...
T Consensus 76 ~~~~ 79 (319)
T 1a5z_A 76 GVPQ 79 (319)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8643
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=85.41 E-value=0.81 Score=44.02 Aligned_cols=71 Identities=10% Similarity=0.140 Sum_probs=39.2
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccCc--CCccccccccCccccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRK--AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~~--~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
+.||+|+|| |.+|..+...|+....+ +++.+ +... .|+..+..+ +....+. . ..+.+++.++|+|+.+.+.
T Consensus 14 ~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~-Di~~~~~g~a~dl~~--~~~~~i~-~-t~d~~~l~~aD~Vi~aag~ 87 (303)
T 2i6t_A 14 VNKITVVGG-GELGIACTLAISAKGIADRLVLL-DLSEGTKGATMDLEI--FNLPNVE-I-SKDLSASAHSKVVIFTVNS 87 (303)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEE-CCC-----CHHHHHH--HTCTTEE-E-ESCGGGGTTCSEEEECCCC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEE-cCCcchHHHHHHHhh--hcCCCeE-E-eCCHHHHCCCCEEEEcCCC
Confidence 469999995 99999988877743322 56554 3322 232222111 1111111 1 1233457899999999854
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=85.35 E-value=0.38 Score=45.16 Aligned_cols=88 Identities=11% Similarity=0.114 Sum_probs=49.3
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
+|+|+| +|-+|+.++..|.....-++..+ +|+. ..+.+.. .+.... ..++ .+...++|+||.|+|.+...
T Consensus 110 ~vliiG-aGg~a~ai~~~L~~~G~~~I~v~-nR~~~ka~~la~---~~~~~~---~~~~-~~~~~~aDiVInatp~gm~p 180 (253)
T 3u62_A 110 PVVVVG-AGGAARAVIYALLQMGVKDIWVV-NRTIERAKALDF---PVKIFS---LDQL-DEVVKKAKSLFNTTSVGMKG 180 (253)
T ss_dssp SEEEEC-CSHHHHHHHHHHHHTTCCCEEEE-ESCHHHHHTCCS---SCEEEE---GGGH-HHHHHTCSEEEECSSTTTTS
T ss_pred eEEEEC-cHHHHHHHHHHHHHcCCCEEEEE-eCCHHHHHHHHH---HcccCC---HHHH-HhhhcCCCEEEECCCCCCCC
Confidence 799999 58899999998887543355444 3332 1111111 111000 1111 12235789999999876432
Q ss_pred H---HHh-hCCCCCEEEEcCCc
Q 015441 144 E---IIK-GLPKSLKIVDLSAD 161 (406)
Q Consensus 144 ~---~~~-~l~~G~~VIDlSa~ 161 (406)
+ +.. .+..+..|+|+...
T Consensus 181 ~~~~i~~~~l~~~~~V~Divy~ 202 (253)
T 3u62_A 181 EELPVSDDSLKNLSLVYDVIYF 202 (253)
T ss_dssp CCCSCCHHHHTTCSEEEECSSS
T ss_pred CCCCCCHHHhCcCCEEEEeeCC
Confidence 1 111 23567888998764
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=85.10 E-value=0.43 Score=48.62 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=25.8
Q ss_pred ccCCccEEEEECcccHHHHHHHHHHHcCCCceEEEE
Q 015441 59 KSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (406)
Q Consensus 59 ~~~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l 94 (406)
....|.+|+|+| .||||.-+.-.|++. ..+++.+
T Consensus 17 ~~~~m~~IaViG-lGYVGLp~A~~~A~~-G~~V~g~ 50 (444)
T 3vtf_A 17 RGSHMASLSVLG-LGYVGVVHAVGFALL-GHRVVGY 50 (444)
T ss_dssp TTCCCCEEEEEC-CSHHHHHHHHHHHHH-TCEEEEE
T ss_pred CCCCCCEEEEEc-cCHHHHHHHHHHHhC-CCcEEEE
Confidence 344567999999 999999999888853 2466665
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=85.04 E-value=0.75 Score=43.56 Aligned_cols=30 Identities=23% Similarity=0.452 Sum_probs=25.0
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+|.|.||||++|+.|++.|.+.. .+++.+.
T Consensus 2 ~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~ 31 (338)
T 1udb_A 2 RVLVTGGSGYIGSHTCVQLLQNG-HDVIILD 31 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred EEEEECCCCHHHHHHHHHHHHCC-CEEEEEe
Confidence 79999999999999999998653 4666654
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=84.79 E-value=0.81 Score=47.28 Aligned_cols=93 Identities=13% Similarity=0.127 Sum_probs=50.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcC-----CCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANH-----PYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLP 138 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~h-----p~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~ 138 (406)
.||+||| .|.+|..+++.|.+. +.++++....+.+......... .+...+ ....+. .+...++|+||+|+|
T Consensus 55 KkIgIIG-lGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~-G~~v~d-~ta~s~-aEAa~~ADVVILaVP 130 (525)
T 3fr7_A 55 KQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAA-GFTEES-GTLGDI-WETVSGSDLVLLLIS 130 (525)
T ss_dssp SEEEEEC-CTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHT-TCCTTT-TCEEEH-HHHHHHCSEEEECSC
T ss_pred CEEEEEe-EhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHC-CCEEec-CCCCCH-HHHHhcCCEEEECCC
Confidence 4899999 999999999988754 2445543322211111101000 000000 000111 223357899999999
Q ss_pred CcchHH----HHhhCCCCCEEEEcCC
Q 015441 139 HGTTQE----IIKGLPKSLKIVDLSA 160 (406)
Q Consensus 139 ~~~s~~----~~~~l~~G~~VIDlSa 160 (406)
.....+ +.+.+..|..|+..+|
T Consensus 131 ~~~~~eVl~eI~p~LK~GaILs~AaG 156 (525)
T 3fr7_A 131 DAAQADNYEKIFSHMKPNSILGLSHG 156 (525)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEESSS
T ss_pred hHHHHHHHHHHHHhcCCCCeEEEeCC
Confidence 765544 3344667877765555
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=84.65 E-value=0.86 Score=41.27 Aligned_cols=31 Identities=26% Similarity=0.255 Sum_probs=25.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||+|.+|+.+++.|.++. .+++.+.
T Consensus 8 k~vlVTGasggiG~~~a~~l~~~G-~~V~~~~ 38 (258)
T 3afn_B 8 KRVLITGSSQGIGLATARLFARAG-AKVGLHG 38 (258)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred CEEEEeCCCChHHHHHHHHHHHCC-CEEEEEC
Confidence 479999999999999999998764 4665553
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=84.51 E-value=0.84 Score=46.87 Aligned_cols=96 Identities=15% Similarity=0.235 Sum_probs=51.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-cc----ccccccCcccc-CCC---------ccc-ccCcccC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-QS----IGSVFPHLISQ-DLP---------TMV-AVKDADF 127 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-~~----i~~v~p~l~~~-~~~---------~~~-~~~~~~~ 127 (406)
.||+||| .|..|..+...|++.- .+++.. +++... .. +......+... .+. .+. ..+.+.+
T Consensus 6 ~kVgVIG-aG~MG~~IA~~la~aG-~~V~l~-D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 82 (483)
T 3mog_A 6 QTVAVIG-SGTMGAGIAEVAASHG-HQVLLY-DISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIHAL 82 (483)
T ss_dssp CCEEEEC-CSHHHHHHHHHHHHTT-CCEEEE-CSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGGGG
T ss_pred CEEEEEC-cCHHHHHHHHHHHHCC-CeEEEE-ECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHHHh
Confidence 5899999 7999999999988643 355444 332110 00 00000000000 000 000 1122345
Q ss_pred CCCCEEEEcCCCcch--HHHH----hhCCCCCEEEEcCCcc
Q 015441 128 SNVDAVFCCLPHGTT--QEII----KGLPKSLKIVDLSADF 162 (406)
Q Consensus 128 ~~vDvVF~al~~~~s--~~~~----~~l~~G~~VIDlSa~f 162 (406)
.++|+||.|.+.... +++. +.+..++.++++++..
T Consensus 83 ~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti 123 (483)
T 3mog_A 83 AAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSI 123 (483)
T ss_dssp GGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSS
T ss_pred cCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCC
Confidence 789999999998743 2333 3345678777776655
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=84.50 E-value=0.43 Score=47.71 Aligned_cols=91 Identities=11% Similarity=0.169 Sum_probs=49.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
.+|+|+|+ |-+|+.+++.|..+..-+++.+ ++... .+.+..- +....+. ..++ .+.+.++|+||.|+|....
T Consensus 168 ~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~-~r~~~ra~~la~~---~g~~~~~-~~~l-~~~l~~aDvVi~at~~~~~ 240 (404)
T 1gpj_A 168 KTVLVVGA-GEMGKTVAKSLVDRGVRAVLVA-NRTYERAVELARD---LGGEAVR-FDEL-VDHLARSDVVVSATAAPHP 240 (404)
T ss_dssp CEEEEESC-CHHHHHHHHHHHHHCCSEEEEE-CSSHHHHHHHHHH---HTCEECC-GGGH-HHHHHTCSEEEECCSSSSC
T ss_pred CEEEEECh-HHHHHHHHHHHHHCCCCEEEEE-eCCHHHHHHHHHH---cCCceec-HHhH-HHHhcCCCEEEEccCCCCc
Confidence 58999995 9999999999986543355544 33211 0011110 1110000 1111 1123579999999986543
Q ss_pred ---HHHHhh--C----CCCCEEEEcCCc
Q 015441 143 ---QEIIKG--L----PKSLKIVDLSAD 161 (406)
Q Consensus 143 ---~~~~~~--l----~~G~~VIDlSa~ 161 (406)
.+..+. + ..+..+||++.+
T Consensus 241 ~~~~~~l~~~~lk~r~~~~~v~vdia~P 268 (404)
T 1gpj_A 241 VIHVDDVREALRKRDRRSPILIIDIANP 268 (404)
T ss_dssp CBCHHHHHHHHHHCSSCCCEEEEECCSS
T ss_pred eecHHHHHHHHHhccCCCCEEEEEccCC
Confidence 233333 2 134678998753
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=84.38 E-value=0.41 Score=45.08 Aligned_cols=89 Identities=16% Similarity=0.165 Sum_probs=46.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccCccccCCCcccccCcccC--CCCCEEEEcCCCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCLPHG 140 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~al~~~ 140 (406)
.+|.|+|| |-+|+.+++.|.... .+++.+. ++. ..+.+...++.. + ... ..+ .+++ .++|+|+.|+|.+
T Consensus 120 ~~vlvlGa-Gg~g~a~a~~L~~~G-~~v~v~~-R~~~~a~~l~~~~~~~-~-~~~-~~~--~~~~~~~~~DivIn~t~~~ 191 (272)
T 1p77_A 120 QHVLILGA-GGATKGVLLPLLQAQ-QNIVLAN-RTFSKTKELAERFQPY-G-NIQ-AVS--MDSIPLQTYDLVINATSAG 191 (272)
T ss_dssp CEEEEECC-SHHHHTTHHHHHHTT-CEEEEEE-SSHHHHHHHHHHHGGG-S-CEE-EEE--GGGCCCSCCSEEEECCCC-
T ss_pred CEEEEECC-cHHHHHHHHHHHHCC-CEEEEEE-CCHHHHHHHHHHcccc-C-CeE-Eee--HHHhccCCCCEEEECCCCC
Confidence 57999996 779999999998765 5665543 331 111221111100 0 110 111 1123 3799999999977
Q ss_pred chHHHH---hh-CCCCCEEEEcCC
Q 015441 141 TTQEII---KG-LPKSLKIVDLSA 160 (406)
Q Consensus 141 ~s~~~~---~~-l~~G~~VIDlSa 160 (406)
...... .. +..+..|+|++-
T Consensus 192 ~~~~~~~i~~~~l~~~~~v~D~~y 215 (272)
T 1p77_A 192 LSGGTASVDAEILKLGSAFYDMQY 215 (272)
T ss_dssp ------CCCHHHHHHCSCEEESCC
T ss_pred CCCCCCCCCHHHcCCCCEEEEeeC
Confidence 643211 11 234678888864
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=84.31 E-value=0.88 Score=46.18 Aligned_cols=85 Identities=9% Similarity=0.080 Sum_probs=51.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCC--cc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH--GT 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~--~~ 141 (406)
.+|+|+| .|.+|+.+++.|...- +++.. .++... +...... .+.. ...+ ++.+.++|+|+.+.+. -+
T Consensus 212 ktVgIiG-~G~IG~~vA~~Lka~G-a~Viv-~D~~p~-~a~~A~~---~G~~---~~sL-~eal~~ADVVilt~gt~~iI 280 (436)
T 3h9u_A 212 KTACVCG-YGDVGKGCAAALRGFG-ARVVV-TEVDPI-NALQAAM---EGYQ---VLLV-EDVVEEAHIFVTTTGNDDII 280 (436)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTT-CEEEE-ECSCHH-HHHHHHH---TTCE---ECCH-HHHTTTCSEEEECSSCSCSB
T ss_pred CEEEEEe-eCHHHHHHHHHHHHCC-CEEEE-ECCChh-hhHHHHH---hCCe---ecCH-HHHHhhCCEEEECCCCcCcc
Confidence 5899999 9999999999998764 56544 333210 0000000 0101 1111 2335689999998764 34
Q ss_pred hHHHHhhCCCCCEEEEcC
Q 015441 142 TQEIIKGLPKSLKIVDLS 159 (406)
Q Consensus 142 s~~~~~~l~~G~~VIDlS 159 (406)
..+..+.++.|..||+.+
T Consensus 281 ~~e~l~~MK~gAIVINvg 298 (436)
T 3h9u_A 281 TSEHFPRMRDDAIVCNIG 298 (436)
T ss_dssp CTTTGGGCCTTEEEEECS
T ss_pred CHHHHhhcCCCcEEEEeC
Confidence 456666677899999876
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=84.19 E-value=0.41 Score=46.49 Aligned_cols=93 Identities=12% Similarity=0.103 Sum_probs=48.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC----CccccccccCccccCCCcccccCc-----ccCCCCCEEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA----GQSIGSVFPHLISQDLPTMVAVKD-----ADFSNVDAVF 134 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~----G~~i~~v~p~l~~~~~~~~~~~~~-----~~~~~vDvVF 134 (406)
.++.|+|| |-+|+.++..|.....-+++.+ +|+.. .+.+..-.....+..+. ...+++ +.+.++|+|+
T Consensus 155 k~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~-nR~~~~~~~a~~la~~~~~~~~~~~~-~~~~~~~~~l~~~l~~aDiII 231 (315)
T 3tnl_A 155 KKMTICGA-GGAATAICIQAALDGVKEISIF-NRKDDFYANAEKTVEKINSKTDCKAQ-LFDIEDHEQLRKEIAESVIFT 231 (315)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTCSEEEEE-ECSSTTHHHHHHHHHHHHHHSSCEEE-EEETTCHHHHHHHHHTCSEEE
T ss_pred CEEEEECC-ChHHHHHHHHHHHCCCCEEEEE-ECCCchHHHHHHHHHHhhhhcCCceE-EeccchHHHHHhhhcCCCEEE
Confidence 57999996 8889999999987644355444 44311 11111000000000000 011111 1134789999
Q ss_pred EcCCCcchHH-----H--HhhCCCCCEEEEcC
Q 015441 135 CCLPHGTTQE-----I--IKGLPKSLKIVDLS 159 (406)
Q Consensus 135 ~al~~~~s~~-----~--~~~l~~G~~VIDlS 159 (406)
.|+|.+.... + ...+..+..|+|+.
T Consensus 232 NaTp~Gm~~~~~~~p~~~~~~l~~~~~V~Dlv 263 (315)
T 3tnl_A 232 NATGVGMKPFEGETLLPSADMLRPELIVSDVV 263 (315)
T ss_dssp ECSSTTSTTSTTCCSCCCGGGCCTTCEEEESC
T ss_pred ECccCCCCCCCCCCCCCcHHHcCCCCEEEEec
Confidence 9999776532 1 11245567788875
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=84.11 E-value=1.3 Score=40.43 Aligned_cols=31 Identities=13% Similarity=0.111 Sum_probs=25.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||+|.+|+++++.|.++. .+++.+.
T Consensus 13 k~vlVTGasggiG~~~a~~l~~~G-~~V~~~~ 43 (265)
T 2o23_A 13 LVAVITGGASGLGLATAERLVGQG-ASAVLLD 43 (265)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEEe
Confidence 479999999999999999998764 4665554
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=83.83 E-value=1.2 Score=47.94 Aligned_cols=98 Identities=15% Similarity=0.279 Sum_probs=53.9
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC----Ccc-cccc----c--cCccc----cCCCccc-ccCccc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA----GQS-IGSV----F--PHLIS----QDLPTMV-AVKDAD 126 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~----G~~-i~~v----~--p~l~~----~~~~~~~-~~~~~~ 126 (406)
+.||+|+| .|.+|..+...|.+.- ++++.+ +++.. ++. +... . ..+.. .....+. ..+.+.
T Consensus 312 ~~kV~VIG-aG~MG~~iA~~la~aG-~~V~l~-D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~~ 388 (725)
T 2wtb_A 312 IKKVAIIG-GGLMGSGIATALILSN-YPVILK-EVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYES 388 (725)
T ss_dssp CCCEEEEC-CSHHHHHHHHHHHTTT-CCEEEE-CSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSSGG
T ss_pred CcEEEEEc-CCHhhHHHHHHHHhCC-CEEEEE-ECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCHHH
Confidence 46899999 8999999999998653 455544 32211 100 0000 0 00000 0000011 112234
Q ss_pred CCCCCEEEEcCCCcch--HHHH----hhCCCCCEEEEcCCccc
Q 015441 127 FSNVDAVFCCLPHGTT--QEII----KGLPKSLKIVDLSADFR 163 (406)
Q Consensus 127 ~~~vDvVF~al~~~~s--~~~~----~~l~~G~~VIDlSa~fR 163 (406)
+.++|+||.|.+.... +++. +.+..++.++++++...
T Consensus 389 ~~~aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~ 431 (725)
T 2wtb_A 389 FRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTID 431 (725)
T ss_dssp GTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSC
T ss_pred HCCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCC
Confidence 6789999999997753 2232 23456788889887653
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=83.28 E-value=1.5 Score=44.51 Aligned_cols=85 Identities=15% Similarity=0.182 Sum_probs=51.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCC--Ccc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLP--HGT 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~--~~~ 141 (406)
.+|+|+| .|.+|+.+++.|..+- +++.. .++... +..... ..+.. ...+ ++.+.++|+|+.|++ +-+
T Consensus 221 ktV~ViG-~G~IGk~vA~~Lra~G-a~Viv-~D~dp~-ra~~A~---~~G~~---v~~L-eeal~~ADIVi~atgt~~lI 289 (435)
T 3gvp_A 221 KQVVVCG-YGEVGKGCCAALKAMG-SIVYV-TEIDPI-CALQAC---MDGFR---LVKL-NEVIRQVDIVITCTGNKNVV 289 (435)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTT-CEEEE-ECSCHH-HHHHHH---HTTCE---ECCH-HHHTTTCSEEEECSSCSCSB
T ss_pred CEEEEEe-eCHHHHHHHHHHHHCC-CEEEE-EeCChh-hhHHHH---HcCCE---eccH-HHHHhcCCEEEECCCCcccC
Confidence 5899999 8999999999998663 45433 332210 000000 00100 1111 234568999999866 334
Q ss_pred hHHHHhhCCCCCEEEEcC
Q 015441 142 TQEIIKGLPKSLKIVDLS 159 (406)
Q Consensus 142 s~~~~~~l~~G~~VIDlS 159 (406)
..+....++.|..||+.+
T Consensus 290 ~~e~l~~MK~gailINvg 307 (435)
T 3gvp_A 290 TREHLDRMKNSCIVCNMG 307 (435)
T ss_dssp CHHHHHHSCTTEEEEECS
T ss_pred CHHHHHhcCCCcEEEEec
Confidence 566777778899999764
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* | Back alignment and structure |
|---|
Probab=82.85 E-value=1.9 Score=38.76 Aligned_cols=36 Identities=8% Similarity=0.066 Sum_probs=28.5
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK 99 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~ 99 (406)
++.++.|+||.|. |+++++.|.+ ..++++.+.++..
T Consensus 11 ~~k~v~IiGAGg~-g~~v~~~l~~-~~~~~vgfiDd~~ 46 (220)
T 4ea9_A 11 AIGGVVIIGGGGH-AKVVIESLRA-CGETVAAIVDADP 46 (220)
T ss_dssp CSSCEEEECCSHH-HHHHHHHHHH-TTCCEEEEECSCC
T ss_pred CCCCEEEEcCCHH-HHHHHHHHHh-CCCEEEEEEeCCc
Confidence 3457999996665 9999999987 5688888887654
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=82.79 E-value=0.93 Score=39.61 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=23.2
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEE
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l 94 (406)
+|.|.||+|.+|+++++.|.++ +++.+
T Consensus 2 ~vlVtGasg~iG~~la~~l~~~---~V~~~ 28 (207)
T 2yut_A 2 RVLITGATGGLGGAFARALKGH---DLLLS 28 (207)
T ss_dssp EEEEETTTSHHHHHHHHHTTTS---EEEEE
T ss_pred EEEEEcCCcHHHHHHHHHHHhC---CEEEE
Confidence 6899999999999999999876 55544
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=82.37 E-value=1.2 Score=43.19 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=26.2
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCceEEEEecc
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD 97 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~ 97 (406)
.+++||+|+|| |.+|..+...|.....++ +.+.+.
T Consensus 7 ~~~~kI~VIGa-G~vG~~lA~~la~~g~~~-V~L~D~ 41 (331)
T 1pzg_A 7 QRRKKVAMIGS-GMIGGTMGYLCALRELAD-VVLYDV 41 (331)
T ss_dssp SCCCEEEEECC-SHHHHHHHHHHHHHTCCE-EEEECS
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEEC
Confidence 34469999997 999999999998654446 444443
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=81.86 E-value=1.3 Score=39.57 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=26.1
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|..+|.|.||+|.+|+++++.|+++. .+++.+.
T Consensus 4 ~~k~vlVtGasggiG~~~a~~l~~~G-~~V~~~~ 36 (234)
T 2ehd_A 4 MKGAVLITGASRGIGEATARLLHAKG-YRVGLMA 36 (234)
T ss_dssp CCCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEE
Confidence 34579999999999999999998754 4665553
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=81.85 E-value=1.1 Score=45.12 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=42.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccc-cccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGS-VFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~-v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
.+|.|+| .|.+|+.+.+.|.... .+++.+-.+...-..+.. ..+.+.+ +......+....+.++|+|+.|++....
T Consensus 5 ~~viIiG-~Gr~G~~va~~L~~~g-~~vvvId~d~~~v~~~~~~g~~vi~G-Dat~~~~L~~agi~~A~~viv~~~~~~~ 81 (413)
T 3l9w_A 5 MRVIIAG-FGRFGQITGRLLLSSG-VKMVVLDHDPDHIETLRKFGMKVFYG-DATRMDLLESAGAAKAEVLINAIDDPQT 81 (413)
T ss_dssp CSEEEEC-CSHHHHHHHHHHHHTT-CCEEEEECCHHHHHHHHHTTCCCEES-CTTCHHHHHHTTTTTCSEEEECCSSHHH
T ss_pred CeEEEEC-CCHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHhCCCeEEEc-CCCCHHHHHhcCCCccCEEEECCCChHH
Confidence 5799999 7999999999998643 566666432211000100 0111112 1111111112234689999999997655
Q ss_pred H
Q 015441 143 Q 143 (406)
Q Consensus 143 ~ 143 (406)
.
T Consensus 82 n 82 (413)
T 3l9w_A 82 N 82 (413)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=81.68 E-value=0.37 Score=46.51 Aligned_cols=73 Identities=22% Similarity=0.311 Sum_probs=39.3
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc---CCccccccccC-ccccCCCcccc-cCcccCCCCCEEEEcCCC
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK---AGQSIGSVFPH-LISQDLPTMVA-VKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~---~G~~i~~v~p~-l~~~~~~~~~~-~~~~~~~~vDvVF~al~~ 139 (406)
||+|+|| |.+|..++-.|.....-|++.+ +... .|.-.+..+.. +...... +.. .+.+++.++|+|+.+.+.
T Consensus 1 KI~IiGa-G~vG~~~a~~l~~~~l~el~L~-Di~~~~~~g~~~dl~~~~~~~~~~~~-i~~t~d~~a~~~aD~Vi~~ag~ 77 (308)
T 2d4a_B 1 MITILGA-GKVGMATAVMLMMRGYDDLLLI-ARTPGKPQGEALDLAHAAAELGVDIR-ISGSNSYEDMRGSDIVLVTAGI 77 (308)
T ss_dssp CEEEECC-SHHHHHHHHHHHHHTCSCEEEE-CSSTTHHHHHHHHHHHHHHHHTCCCC-EEEESCGGGGTTCSEEEECCSC
T ss_pred CEEEECc-CHHHHHHHHHHHhCCCCEEEEE-cCChhhHHHHHHHHHHhhhhcCCCeE-EEECCCHHHhCCCCEEEEeCCC
Confidence 6999997 9999999988875432256555 3221 11111100000 0001111 222 233467899999999764
Q ss_pred c
Q 015441 140 G 140 (406)
Q Consensus 140 ~ 140 (406)
.
T Consensus 78 ~ 78 (308)
T 2d4a_B 78 G 78 (308)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.66 E-value=0.54 Score=45.52 Aligned_cols=95 Identities=19% Similarity=0.192 Sum_probs=45.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
-+|.|.||+|-+|...++++......+++...+.+.. ..+.....+....+....+.+....-.++|+||.|.+.....
T Consensus 144 ~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~~~~~~-~~~~~ga~~~~~~~~~~~~~~~~~~~~g~Dvv~d~~g~~~~~ 222 (349)
T 4a27_A 144 MSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTASTFKH-EAIKDSVTHLFDRNADYVQEVKRISAEGVDIVLDCLCGDNTG 222 (349)
T ss_dssp CEEEESSTTSHHHHHHHHHHTTSTTCEEEEEECGGGH-HHHGGGSSEEEETTSCHHHHHHHHCTTCEEEEEEECC-----
T ss_pred CEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeCCHHHH-HHHHcCCcEEEcCCccHHHHHHHhcCCCceEEEECCCchhHH
Confidence 4799999999999999988765545666666532211 001000000000000000010000113789999999876554
Q ss_pred HHHhhCCCCCEEEEcC
Q 015441 144 EIIKGLPKSLKIVDLS 159 (406)
Q Consensus 144 ~~~~~l~~G~~VIDlS 159 (406)
...+.+..+-+++..+
T Consensus 223 ~~~~~l~~~G~~v~~G 238 (349)
T 4a27_A 223 KGLSLLKPLGTYILYG 238 (349)
T ss_dssp --CTTEEEEEEEEEEC
T ss_pred HHHHHhhcCCEEEEEC
Confidence 4444454444555343
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=81.63 E-value=1.1 Score=42.66 Aligned_cols=85 Identities=19% Similarity=0.246 Sum_probs=48.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
.++.|+|| |-+|+.++..|.....-+++.++ |+. ..+.+.. .+.. . .+.+++. + ++|+|+.|+|.+..
T Consensus 123 k~vlvlGa-GGaaraia~~L~~~G~~~v~v~n-Rt~~ka~~La~---~~~~--~-~~~~l~~--l-~~DivInaTp~Gm~ 191 (282)
T 3fbt_A 123 NICVVLGS-GGAARAVLQYLKDNFAKDIYVVT-RNPEKTSEIYG---EFKV--I-SYDELSN--L-KGDVIINCTPKGMY 191 (282)
T ss_dssp SEEEEECS-STTHHHHHHHHHHTTCSEEEEEE-SCHHHHHHHCT---TSEE--E-EHHHHTT--C-CCSEEEECSSTTST
T ss_pred CEEEEECC-cHHHHHHHHHHHHcCCCEEEEEe-CCHHHHHHHHH---hcCc--c-cHHHHHh--c-cCCEEEECCccCcc
Confidence 58999995 77799999999876543665444 332 1111111 1110 0 1222222 4 78999999997754
Q ss_pred HH-----HHh-hCCCCCEEEEcC
Q 015441 143 QE-----IIK-GLPKSLKIVDLS 159 (406)
Q Consensus 143 ~~-----~~~-~l~~G~~VIDlS 159 (406)
.. +.. .+..+..|+|+-
T Consensus 192 ~~~~~~pi~~~~l~~~~~v~Dlv 214 (282)
T 3fbt_A 192 PKEGESPVDKEVVAKFSSAVDLI 214 (282)
T ss_dssp TSTTCCSSCHHHHTTCSEEEESC
T ss_pred CCCccCCCCHHHcCCCCEEEEEe
Confidence 32 111 235677888875
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=81.24 E-value=0.95 Score=48.73 Aligned_cols=98 Identities=16% Similarity=0.251 Sum_probs=53.1
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-cc-ccccccCc---ccc-CCC---------ccc-ccCccc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-QS-IGSVFPHL---ISQ-DLP---------TMV-AVKDAD 126 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-~~-i~~v~p~l---~~~-~~~---------~~~-~~~~~~ 126 (406)
..||+||| .|..|..+...|.+.- ++++.+ +++... .. ...+...+ ... .+. .+. ..+.+.
T Consensus 314 i~kV~VIG-aG~MG~~iA~~la~aG-~~V~l~-D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~~ 390 (715)
T 1wdk_A 314 VKQAAVLG-AGIMGGGIAYQSASKG-TPILMK-DINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGD 390 (715)
T ss_dssp CSSEEEEC-CHHHHHHHHHHHHHTT-CCEEEE-CSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTT
T ss_pred CCEEEEEC-CChhhHHHHHHHHhCC-CEEEEE-ECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCHHH
Confidence 45799999 8999999999988642 355444 332110 00 00000000 000 000 000 112234
Q ss_pred CCCCCEEEEcCCCcch--HHHHh----hCCCCCEEEEcCCccc
Q 015441 127 FSNVDAVFCCLPHGTT--QEIIK----GLPKSLKIVDLSADFR 163 (406)
Q Consensus 127 ~~~vDvVF~al~~~~s--~~~~~----~l~~G~~VIDlSa~fR 163 (406)
+.++|+||.|.+.... +++.. .+..++.++++++...
T Consensus 391 ~~~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~ 433 (715)
T 1wdk_A 391 FGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTIS 433 (715)
T ss_dssp GGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSC
T ss_pred HCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCC
Confidence 5689999999997653 22322 2356788889887653
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=80.55 E-value=0.99 Score=41.22 Aligned_cols=31 Identities=16% Similarity=0.169 Sum_probs=25.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||+|.+|+++++.|.+.. .+++.+.
T Consensus 16 k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~ 46 (247)
T 1uzm_A 16 RSVLVTGGNRGIGLAIAQRLAADG-HKVAVTH 46 (247)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEe
Confidence 469999999999999999998764 4665553
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=80.34 E-value=2.6 Score=38.77 Aligned_cols=84 Identities=11% Similarity=0.125 Sum_probs=48.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCc-ccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPT-MVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~-~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
.+|.|+| .|-+|...++.|++.. .+++.++.+. ...+.... ....+.. ....+++++.++|+||.|++....
T Consensus 32 k~VLVVG-gG~va~~ka~~Ll~~G-A~VtVvap~~--~~~l~~l~---~~~~i~~i~~~~~~~dL~~adLVIaAT~d~~~ 104 (223)
T 3dfz_A 32 RSVLVVG-GGTIATRRIKGFLQEG-AAITVVAPTV--SAEINEWE---AKGQLRVKRKKVGEEDLLNVFFIVVATNDQAV 104 (223)
T ss_dssp CCEEEEC-CSHHHHHHHHHHGGGC-CCEEEECSSC--CHHHHHHH---HTTSCEEECSCCCGGGSSSCSEEEECCCCTHH
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCC-CEEEEECCCC--CHHHHHHH---HcCCcEEEECCCCHhHhCCCCEEEECCCCHHH
Confidence 5799999 8999999999998753 4565554321 11111100 0001110 112334567899999999987655
Q ss_pred HHHH-hhCCCCCE
Q 015441 143 QEII-KGLPKSLK 154 (406)
Q Consensus 143 ~~~~-~~l~~G~~ 154 (406)
...+ .....|+.
T Consensus 105 N~~I~~~ak~gi~ 117 (223)
T 3dfz_A 105 NKFVKQHIKNDQL 117 (223)
T ss_dssp HHHHHHHSCTTCE
T ss_pred HHHHHHHHhCCCE
Confidence 4433 33455654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 406 | ||||
| d2cvoa2 | 165 | d.81.1.1 (A:219-383) Putative semialdehyde dehydro | 3e-51 | |
| d1vkna2 | 163 | d.81.1.1 (A:145-307) N-acetyl-gamma-glutamyl-phosp | 2e-49 | |
| d2cvoa1 | 183 | c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde | 2e-40 | |
| d2cvoa1 | 183 | c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde | 0.001 | |
| d2g17a2 | 155 | d.81.1.1 (A:154-308) N-acetyl-gamma-glutamyl-phosp | 8e-40 | |
| d1vkna1 | 176 | c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamy | 1e-37 | |
| d2g17a1 | 179 | c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamy | 8e-29 | |
| d2hjsa1 | 144 | c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog | 2e-19 | |
| d2gz1a1 | 154 | c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semiald | 3e-18 | |
| d1mb4a1 | 147 | c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semiald | 2e-12 | |
| d1t4ba1 | 146 | c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semiald | 1e-10 | |
| d1nvmb1 | 157 | c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydroge | 4e-05 |
| >d2cvoa2 d.81.1.1 (A:219-383) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Score = 167 bits (424), Expect = 3e-51
Identities = 127/165 (76%), Positives = 141/165 (85%)
Query: 210 CYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRH 269
CYPTSIQLPLVPLI+A LI+ NIIIDAKSGVSGAGRGAKEANLY+EIAEGI++YG+ H
Sbjct: 1 CYPTSIQLPLVPLIKAKLIKVSNIIIDAKSGVSGAGRGAKEANLYTEIAEGIHAYGIKGH 60
Query: 270 RHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEH 329
RHVPEIEQGL+ A SKVT+SFTP+L+ M RGMQST++VEMAPGVT DLYQ LK +YE
Sbjct: 61 RHVPEIEQGLSEAAESKVTISFTPNLICMKRGMQSTMFVEMAPGVTANDLYQHLKSTYEG 120
Query: 330 EEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIPGRAIIISVIDN 374
EEFVKLL VP T +V GSNYC MNVF DRIPGRAIIISVIDN
Sbjct: 121 EEFVKLLNGSSVPHTRHVVGSNYCFMNVFEDRIPGRAIIISVIDN 165
|
| >d1vkna2 d.81.1.1 (A:145-307) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Score = 162 bits (411), Expect = 2e-49
Identities = 72/165 (43%), Positives = 103/165 (62%), Gaps = 2/165 (1%)
Query: 210 CYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRH 269
CYPTS+ L L P ++ NL+ I++DAKSGVSGAGR K L+SE+ E + Y V +H
Sbjct: 1 CYPTSVILALAPALKHNLVDPETILVDAKSGVSGAGRKEKVDYLFSEVNESLRPYNVAKH 60
Query: 270 RHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEH 329
RHVPE+EQ L + KV V FTPHL+PM RG+ STIYV+ ++E++++ Y++
Sbjct: 61 RHVPEMEQELGKISGKKVNVVFTPHLVPMTRGILSTIYVKTDK--SLEEIHEAYLEFYKN 118
Query: 330 EEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIPGRAIIISVIDN 374
E FV +L G+ P T GSN+ + + + I++S IDN
Sbjct: 119 EPFVHVLPMGIYPSTKWCYGSNHVFIGMQMEERTNTLILMSAIDN 163
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Score = 140 bits (352), Expect = 2e-40
Identities = 124/176 (70%), Positives = 144/176 (81%), Gaps = 1/176 (0%)
Query: 59 KSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPT 118
KS ++VRI +LGASGYTGAEIVRLLANHP F IK+MTADRKAG+ GSVFPHLI+QDLP
Sbjct: 1 KSGEEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPN 60
Query: 119 MVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPH 178
+VAVKDADFSNVDAVFCCLPHGTTQEIIKGLP+ LKIVDLSADFRLRD++EY EWYG H
Sbjct: 61 LVAVKDADFSNVDAVFCCLPHGTTQEIIKGLPQELKIVDLSADFRLRDINEYAEWYGHSH 120
Query: 179 IAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPL-IQANLIQYRNI 233
AP+LQ+EAVYGLTE+ R +I+NARLVANPG + + L + L + +
Sbjct: 121 RAPELQQEAVYGLTEVLRNEIRNARLVANPGLVKGASGQAVQNLNLMMGLPENTGL 176
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Score = 37.7 bits (86), Expect = 0.001
Identities = 31/56 (55%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 351 NYCLMNVFPDRIPGRAIIISVIDNLVKGASGQALQNLNIMLGFPENTGLLYQPLFP 406
Y L V + I ++ LVKGASGQA+QNLN+M+G PENTGL YQPLFP
Sbjct: 130 VYGLTEVLRNEIRNARLVA--NPGLVKGASGQAVQNLNLMMGLPENTGLQYQPLFP 183
|
| >d2g17a2 d.81.1.1 (A:154-308) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} Length = 155 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Score = 137 bits (346), Expect = 8e-40
Identities = 62/166 (37%), Positives = 83/166 (50%), Gaps = 12/166 (7%)
Query: 210 CYPTSIQLPLVPLIQANLIQYRN-IIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTR 268
CYPT+ QL L PLI L+ +I+A SGVSGAGR A +N + E+ + YGV
Sbjct: 1 CYPTAAQLSLKPLIDGGLLDLTQWPVINATSGVSGAGRKAAISNSFCEV--SLQPYGVFT 58
Query: 269 HRHVPEIEQGLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYE 328
HRH PEI L V FTPHL RG+ TI + GVT + L+ +Y
Sbjct: 59 HRHQPEIAVHL------GAEVIFTPHLGNFPRGILETITCRLKAGVTHAQVADVLQKAYG 112
Query: 329 HEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIPGRAIIISVIDN 374
+ V+L +KG VP NV G +C + I+++ DN
Sbjct: 113 DKPLVRLYDKG-VPALKNVVGLPFCDIGFAVQG--EHLIVVATEDN 155
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Score = 132 bits (333), Expect = 1e-37
Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 4/171 (2%)
Query: 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVK 123
+R G++GA+GYTG E+VRLL NHP I +++ AG+ + +FP + ++
Sbjct: 2 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTL-ENSILSEFDP 60
Query: 124 DADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDL 183
+ N D +F LP G + ++++ K +KI+DL ADFR D Y EWYG+ +
Sbjct: 61 EKVSKNCDVLFTALPAGASYDLVRE-LKGVKIIDLGADFRFDDPGVYREWYGKELSGYE- 118
Query: 184 QKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPL-IQANLIQYRNI 233
+ VYGL E+ RE+IKNA++V NPG + + + I L + + +
Sbjct: 119 NIKRVYGLPELHREEIKNAQVVGNPGLVKGASGQAVQNMNIMFGLDETKGL 169
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Score = 108 bits (271), Expect = 8e-29
Identities = 50/177 (28%), Positives = 86/177 (48%), Gaps = 7/177 (3%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD---RKAGQSIGSVFPHLISQDLPTMVA 121
++GASGY GAE+V + HP+ I +T AG+ I + P L +
Sbjct: 3 NTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQP 62
Query: 122 VKDAD--FSNVDAVFCCLPHGTTQEIIKGLPKS-LKIVDLSADFRLRDVSEYEEWYGQPH 178
+ D ++VD VF H + ++ ++ + DLS FR+ D + YE++YG H
Sbjct: 63 MSDVRDFSADVDVVFLATAHEVSHDLAPQFLQAGCVVFDLSGAFRVNDRAFYEKYYGFTH 122
Query: 179 IAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLV-PLIQANLIQYRNII 234
P+L ++AVYGL E + + + A L+A PG + + I+ + +++I
Sbjct: 123 QYPELLEQAVYGLAEWNVDKLNTANLIAVPGLLKGAAAQAVQCANIRFGFAETQSLI 179
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Score = 81.8 bits (201), Expect = 2e-19
Identities = 26/163 (15%), Positives = 53/163 (32%), Gaps = 24/163 (14%)
Query: 62 KQVRIGLLGASGYTGAEIVRLLA--NHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTM 119
+ + + ++GA+G G +V LL + P + L+ + AGQ +G +
Sbjct: 1 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESS------LRV 54
Query: 120 VAVKDADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHI 179
V DFS+V F ++ + + V + E P +
Sbjct: 55 GDVDSFDFSSVGLAFFAAAAEVSRAHAERARAAGCSVIDLSGAL--------EPSVAPPV 106
Query: 180 APDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPL 222
+ E + L+++P + L+
Sbjct: 107 MVSVNAERL--------ASQAAPFLLSSPAALNAVLLGELLIK 141
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} Length = 154 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Score = 78.8 bits (193), Expect = 3e-18
Identities = 24/164 (14%), Positives = 51/164 (31%), Gaps = 22/164 (13%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKD 124
+ ++GA+G GA+++++L K+ A QD+ +
Sbjct: 3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYL---ASARSAGKSLKFKDQDITIEETTET 59
Query: 125 ADFSNVDAVFCCLPHGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQ 184
A A+F + + + + +VD ++ FR H
Sbjct: 60 AFEGVDIALFSAGSSTSAKYAPYAVKAGVVVVDNTSYFRQNPDVPLVVPEVNAH------ 113
Query: 185 KEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVPLIQANLI 228
+ ++A P S+Q+ L + L+
Sbjct: 114 ------------ALDAHNGIIACPNAAWNSVQI-AETLHERGLV 144
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} Length = 147 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Score = 62.4 bits (151), Expect = 2e-12
Identities = 26/165 (15%), Positives = 55/165 (33%), Gaps = 35/165 (21%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKD 124
R+GL+G G G+ +++ + F + + IG P+ A
Sbjct: 2 RVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFF--STSQIGVPAPNFGKDAGMLHDAFDI 59
Query: 125 ADFSNVDAVFCCLPHGTTQEIIKGLPKS---LKIVDLSADFRLRDVSEYEEWYGQPHIAP 181
+DAV C T+++ L ++ +D ++ R
Sbjct: 60 ESLKQLDAVITCQGGSYTEKVYPALRQAGWKGYWIDAASTLR------------------ 101
Query: 182 DLQKEAVYGLTEISREDIKNAR---------LVANPGCYPTSIQL 217
+ KEA+ L ++ + I + A P ++++
Sbjct: 102 -MDKEAIITLDPVNLKQILHGIHHGTKTFVGGAAEPLR--RTLRI 143
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} Length = 146 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 57.4 bits (138), Expect = 1e-10
Identities = 20/142 (14%), Positives = 43/142 (30%), Gaps = 24/142 (16%)
Query: 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKD 124
+G +G G G+ +++ + F + +G P A
Sbjct: 3 NVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFF--STSQLGQAAPSFGGTTGTLQDAFDL 60
Query: 125 ADFSNVDAVFCCLPHGTTQEIIKGL---PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAP 181
+D + C T EI L +D ++ R++D
Sbjct: 61 EALKALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKD--------------- 105
Query: 182 DLQKEAVYGLTEISREDIKNAR 203
+A+ L ++++ I +
Sbjct: 106 ----DAIIILDPVNQDVITDGL 123
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} Length = 157 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Score = 41.2 bits (96), Expect = 4e-05
Identities = 20/160 (12%), Positives = 53/160 (33%), Gaps = 26/160 (16%)
Query: 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLI-SQDLPTMV 120
+++++ ++G+ ++++L N Y + M A + + +
Sbjct: 3 QKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEG 62
Query: 121 AVKDADFSNVDAVFCCLP---HGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQP 177
+K +F+++D VF H + +++ ++++DL+ Y P
Sbjct: 63 LIKLPEFADIDFVFDATSASAHVQNEALLRQAKPGIRLIDLTPAAIGP--------YCVP 114
Query: 178 HIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQL 217
+ + N +V G I
Sbjct: 115 VVNLEEHLGK------------LNVNMVTYAGN--LDIMT 140
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 406 | |||
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 100.0 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 100.0 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 100.0 | |
| d2cvoa2 | 165 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 100.0 | |
| d1vkna2 | 163 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 100.0 | |
| d2g17a2 | 155 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 100.0 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 100.0 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 99.98 | |
| d2hjsa2 | 190 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 99.97 | |
| d1t4ba2 | 221 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 99.97 | |
| d1mb4a2 | 222 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 99.97 | |
| d2gz1a2 | 202 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 99.97 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 99.94 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 99.89 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 99.79 | |
| d1cf2o2 | 165 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.76 | |
| d1b7go2 | 162 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.68 | |
| d1gado1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.63 | |
| d2czca1 | 162 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.62 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.6 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.55 | |
| d3cmco1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.53 | |
| d1dssg1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.53 | |
| d1u8fo1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.52 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.5 | |
| d1k3ta1 | 190 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.5 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.49 | |
| d1rm4a1 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.46 | |
| d1u8fo2 | 164 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.42 | |
| d2g82a2 | 162 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.41 | |
| d1obfo2 | 162 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.4 | |
| d1k3ta2 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.38 | |
| d1rm4a2 | 163 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.38 | |
| d2b4ro1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.36 | |
| d1hdgo1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.36 | |
| d3cmco2 | 163 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.35 | |
| d1obfo1 | 173 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.2 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 98.38 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 98.08 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 97.68 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 97.67 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 97.65 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 97.61 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 97.53 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 97.49 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 97.22 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 97.12 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 97.1 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 97.07 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 97.06 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 97.0 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 96.96 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 96.94 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 96.93 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 96.91 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 96.88 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 96.81 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 96.75 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 96.68 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 96.68 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 96.65 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 96.63 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 96.54 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 96.54 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 96.49 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 96.05 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 96.04 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 96.0 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 95.94 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 95.94 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 95.93 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 95.91 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 95.89 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 95.88 | |
| d1ebfa1 | 168 | Homoserine dehydrogenase {Baker's yeast (Saccharom | 95.78 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 95.66 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 95.63 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 95.62 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 95.52 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 95.51 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 95.45 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 95.43 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 95.42 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 95.37 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 95.32 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 95.26 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 95.24 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 95.13 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 95.05 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 95.01 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 94.99 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 94.94 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 94.84 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 94.78 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 94.72 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 94.71 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 94.67 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 94.62 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 94.57 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 94.48 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 94.44 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 94.4 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 94.18 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 94.16 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 94.12 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 94.11 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 94.05 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 93.95 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 93.94 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 93.9 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 93.78 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 93.77 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 93.76 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 93.72 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 93.69 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 93.62 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 93.45 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 93.17 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 92.8 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 92.65 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 92.55 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 92.53 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 92.39 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 92.18 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 92.01 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 91.89 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 91.87 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 91.58 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 91.5 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 91.38 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 91.13 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 90.88 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 90.65 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 90.34 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 90.08 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 89.9 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 89.73 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 89.31 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 89.25 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 88.89 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 88.77 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 88.08 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 86.53 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 86.21 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 86.03 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 85.67 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 85.31 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 84.1 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 82.73 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 82.53 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 81.76 |
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=6.7e-46 Score=335.38 Aligned_cols=173 Identities=34% Similarity=0.615 Sum_probs=152.9
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccC-CCCCEEEEcCCCcc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADF-SNVDAVFCCLPHGT 141 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~-~~vDvVF~al~~~~ 141 (406)
|+||||+|||||+|+||+|+|.+||++|+..+++++++|+++.+++|++... . .+...+.+++ .++|+||+|+|+++
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~-~-~~~~~~~~~~~~~~dvvf~a~p~~~ 78 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLEN-S-ILSEFDPEKVSKNCDVLFTALPAGA 78 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCC-C-BCBCCCHHHHHHHCSEEEECCSTTH
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhcc-c-cccccCHhHhccccceEEEccccHH
Confidence 7899999999999999999999999999999999999999999999987542 2 2333333333 47999999999999
Q ss_pred hHHHHhhCCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCcEEecCCChHHHHHHHHHH
Q 015441 142 TQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPLVP 221 (406)
Q Consensus 142 s~~~~~~l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~iVanPgC~tta~~l~L~P 221 (406)
+++++++. ++++|||||+||||++.+.|++||+.+|..|++. +++||+||+||++++++++|||||||+|+++++|+|
T Consensus 79 s~~~~~~~-~~~~VIDlSadfRl~~~~~y~~~Y~~~h~~~~~~-~~~YGlpE~~r~~i~~~~~IanPgC~~t~~~laL~P 156 (176)
T d1vkna1 79 SYDLVREL-KGVKIIDLGADFRFDDPGVYREWYGKELSGYENI-KRVYGLPELHREEIKNAQVVGNPGLVKGASGQAVQN 156 (176)
T ss_dssp HHHHHTTC-CSCEEEESSSTTTCSSHHHHHHHHCCCCTTGGGC-CEEECCHHHHHHHHTTCSEEECCCTTTTTHHHHHHH
T ss_pred HHHHHHhh-ccceEEecCccccccchhhHHHhhcccccccccc-ceeecCcHHhHHHHhcCCEEEccCcHHHHHHHHHhh
Confidence 99998764 6899999999999999999999999999999988 589999999999999999999999999999999999
Q ss_pred HHHccCCCcceEEEEEeeccCccCcchh
Q 015441 222 LIQANLIQYRNIIIDAKSGVSGAGRGAK 249 (406)
Q Consensus 222 L~~~~l~~i~~i~v~t~~gvSGaG~~~~ 249 (406)
|++. +++ ++.||+|++++
T Consensus 157 L~~~--~gi--------~~~~g~~~~p~ 174 (176)
T d1vkna1 157 MNIM--FGL--------DETKGLEFTPI 174 (176)
T ss_dssp HHHH--TTC--------CTTTTCCCCCC
T ss_pred HHHh--cCC--------ccccccccCCC
Confidence 9876 343 57899998763
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.8e-43 Score=318.72 Aligned_cols=171 Identities=29% Similarity=0.485 Sum_probs=149.5
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEec---cCcCCccccccccCccccCCCcccccCcc--cCCCCCEEEEcC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA---DRKAGQSIGSVFPHLISQDLPTMVAVKDA--DFSNVDAVFCCL 137 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s---~~~~G~~i~~v~p~l~~~~~~~~~~~~~~--~~~~vDvVF~al 137 (406)
|+||||+|||||+|+||+|+|.+||++++..+.+ .+++|+++.+.+|++.+.........++. .+.++|++|+|+
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~al 80 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLAT 80 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECS
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeeccc
Confidence 7899999999999999999999999999988865 35789999999998865322222222222 246899999999
Q ss_pred CCcchHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCcEEecCCChHHHHH
Q 015441 138 PHGTTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQ 216 (406)
Q Consensus 138 ~~~~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~iVanPgC~tta~~ 216 (406)
|++++.++++.+ ++|++|||+|+|||+++...|++||+.+|..|+++.+++||+||+||++++++++|||||||+|+++
T Consensus 81 p~~~s~~~~~~~~~~~~~vIDlSadfRl~~~~~~~~~y~~~~~~~~~~~~~vYglpE~~r~~i~~~~~IAnPGCyaTa~~ 160 (179)
T d2g17a1 81 AHEVSHDLAPQFLQAGCVVFDLSGAFRVNDRAFYEKYYGFTHQYPELLEQAVYGLAEWNVDKLNTANLIAVPGLLKGAAA 160 (179)
T ss_dssp CHHHHHHHHHHHHHTTCEEEECSSTTSSSCHHHHHHHHCSCCSCHHHHHHCEECCGGGCHHHHTTCSEEECCCTTTTTHH
T ss_pred cchhHHHHhhhhhhcCceeecccccccccccccccccccccccccccccccccCchhhhHHHHhcCCEEEcCCchHHHHH
Confidence 999999999876 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH-HHHHccCCCcceE
Q 015441 217 LPLV-PLIQANLIQYRNI 233 (406)
Q Consensus 217 l~L~-PL~~~~l~~i~~i 233 (406)
|+|+ ||.+.|+++.+.|
T Consensus 161 laL~~pl~~~gli~~~~i 178 (179)
T d2g17a1 161 QAVQCANIRFGFAETQSL 178 (179)
T ss_dssp HHHHHHHHHHTCCTTTTT
T ss_pred HHHHhHHHHcCCCCccCc
Confidence 9996 8899988765543
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=100.00 E-value=4.1e-43 Score=319.06 Aligned_cols=175 Identities=71% Similarity=1.119 Sum_probs=155.2
Q ss_pred ccCCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCC
Q 015441 59 KSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLP 138 (406)
Q Consensus 59 ~~~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~ 138 (406)
++.+++||||+|||||+|+||+|+|++||++|+..++|++++|+++.+++|++...++.......++.+.++|+||+|+|
T Consensus 1 ~s~~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp 80 (183)
T d2cvoa1 1 KSGEEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLP 80 (183)
T ss_dssp CCSSCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCS
T ss_pred CCCCccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccc
Confidence 35678999999999999999999999999999999999999999999999998665544333333445678999999999
Q ss_pred CcchHHHHhhCCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCcEEecCCChHHHHHHH
Q 015441 139 HGTTQEIIKGLPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLP 218 (406)
Q Consensus 139 ~~~s~~~~~~l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~iVanPgC~tta~~l~ 218 (406)
++.+.++++.+..+.++||++++||+.+...|.+||+.+|..|+++.+++||+||+||++++++++|||||||||+++|+
T Consensus 81 ~~~s~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~vyglpE~~r~~i~~a~~IANPgC~~t~~~la 160 (183)
T d2cvoa1 81 HGTTQEIIKGLPQELKIVDLSADFRLRDINEYAEWYGHSHRAPELQQEAVYGLTEVLRNEIRNARLVANPGLVKGASGQA 160 (183)
T ss_dssp SSHHHHHHHTSCSSCEEEECSSTTTCSCHHHHHHHHSSCCSCHHHHTTCEECCHHHHHHHHHHCSEEECCCTTTTTHHHH
T ss_pred cchHHHHHHHHHhcCcccccchhhhccccchheeeccccccchhhhccccccCchHHHHHHhhCCEeeCCCcHHHHHHHh
Confidence 99999999988666778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH-HHccCCCcceE
Q 015441 219 LVPL-IQANLIQYRNI 233 (406)
Q Consensus 219 L~PL-~~~~l~~i~~i 233 (406)
|+|| .+.||++...|
T Consensus 161 L~PL~~~~gli~~~~i 176 (183)
T d2cvoa1 161 VQNLNLMMGLPENTGL 176 (183)
T ss_dssp HHHHHHHHTSCTTTTC
T ss_pred hhhHHHhcCCCcccce
Confidence 9999 56676665544
|
| >d2cvoa2 d.81.1.1 (A:219-383) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=100.00 E-value=1.8e-39 Score=289.98 Aligned_cols=165 Identities=77% Similarity=1.168 Sum_probs=158.8
Q ss_pred ChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhcCcccccCCcccchhhhhhhhccccCCCceE
Q 015441 210 CYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTV 289 (406)
Q Consensus 210 C~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni~py~~~~h~h~pEi~~~l~~i~~~~~~v 289 (406)
||+|+++|+|+||.+.++++.+.|+|++++|+|||||++.+.+++.++.+|++||+++.|||+|||+|.++++.+.++++
T Consensus 1 CyaT~~il~l~PL~~~gli~~~~i~i~a~SG~SGaGk~~~~~~~~~~~~~n~~~Y~~~~HrH~pEi~q~l~~~~~~~~~~ 80 (165)
T d2cvoa2 1 CYPTSIQLPLVPLIKAKLIKVSNIIIDAKSGVSGAGRGAKEANLYTEIAEGIHAYGIKGHRHVPEIEQGLSEAAESKVTI 80 (165)
T ss_dssp HHHHHHHHHHHHHHHTTCBCSSSCEEEEEEEGGGGCSCCCGGGBHHHHTTCCEECSCSCCTHHHHHHHHHHHHHTSCCCC
T ss_pred CchHHHHHHHHHHHHcCCCCCCCeEEEEeccccccccccchhhhhhhhhhceeccchhccccCcHHHHHhhhccCCCccE
Confidence 99999999999999999887778999999999999999999999999999999999999999999999998877788899
Q ss_pred EEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCccccccccCCCcEEEEEEEeCcCCeEEEE
Q 015441 290 SFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIPGRAIII 369 (406)
Q Consensus 290 ~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~~~v~g~n~~~v~~~~~~~~~~~~~~ 369 (406)
.|+||.+|++||+++|++++++++++.+|++++|+++|++++||+|.+.+.+|++++|.|||+|+|+++.+++.++++++
T Consensus 81 ~F~P~l~p~~RGil~ti~~~~~~~~~~~~i~~~~~~~Y~~~~FV~V~~~~~~p~~~~v~gTN~~~I~v~~~~~~~~~vi~ 160 (165)
T d2cvoa2 81 SFTPNLICMKRGMQSTMFVEMAPGVTANDLYQHLKSTYEGEEFVKLLNGSSVPHTRHVVGSNYCFMNVFEDRIPGRAIII 160 (165)
T ss_dssp EEEEEEESSSSCEEEEEEEEBCTTCCHHHHHHHHHHHHTTCTTEEECSTTCCCCGGGTTTSSCEEEEEEECSSTTEEEEE
T ss_pred EEEeeeccccceeEEecccccccccchHHHHHHHHHHhhhcceEEEecCCCCCChhHccCCCcEEEEEEEeCCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999888899999999999999999988888999999
Q ss_pred EEehh
Q 015441 370 SVIDN 374 (406)
Q Consensus 370 ~v~DN 374 (406)
+++||
T Consensus 161 s~iDN 165 (165)
T d2cvoa2 161 SVIDN 165 (165)
T ss_dssp EEECT
T ss_pred EEecC
Confidence 99999
|
| >d1vkna2 d.81.1.1 (A:145-307) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.6e-39 Score=287.57 Aligned_cols=163 Identities=44% Similarity=0.734 Sum_probs=156.0
Q ss_pred ChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhcCcccccCCcccchhhhhhhhccccCCCceE
Q 015441 210 CYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVTV 289 (406)
Q Consensus 210 C~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni~py~~~~h~h~pEi~~~l~~i~~~~~~v 289 (406)
||+|+++|+|+||.++++++.+.|+|++++|+|||||++.+.+++.++.+|++||++..|||+|||+|.|+++.+.++++
T Consensus 1 CyaT~~~l~l~PLv~~gli~~~~i~i~a~SG~SGaGk~~~~~~~~~~~~~~~~~Y~~~~HrH~pEi~q~l~~~~~~~~~~ 80 (163)
T d1vkna2 1 CYPTSVILALAPALKHNLVDPETILVDAKSGVSGAGRKEKVDYLFSEVNESLRPYNVAKHRHVPEMEQELGKISGKKVNV 80 (163)
T ss_dssp HHHHHHHHHHHHHHHTTCSCCSEEEEEEEEEGGGGCSCCSGGGBHHHHTTCCEECSCSCCTHHHHHHHHHHHHHTSCCEE
T ss_pred CchHHHHHHHHHHHHcCCCCCCceEEEeecccccccccccccccccccccccccchhhhccccHHHHHHHHhhcCCcccE
Confidence 99999999999999999888788999999999999999999999999999999999999999999999998888888899
Q ss_pred EEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCccccccccCCCcEEEEEEEeCcCCeEEEE
Q 015441 290 SFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIPGRAIII 369 (406)
Q Consensus 290 ~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~~~v~g~n~~~v~~~~~~~~~~~~~~ 369 (406)
.|+||.+|++||+++|+++.++ .+.+|++++|+++|+++|||+|++.+.+|++++|.|||+|+|+++.+++.++++++
T Consensus 81 ~F~Phl~p~~RGil~ti~~~~~--~s~~~i~~~~~~~Y~~~~fV~V~~~~~~p~~~~V~gTN~~~I~v~~~~~~~~~vi~ 158 (163)
T d1vkna2 81 VFTPHLVPMTRGILSTIYVKTD--KSLEEIHEAYLEFYKNEPFVHVLPMGIYPSTKWCYGSNHVFIGMQMEERTNTLILM 158 (163)
T ss_dssp EEEEEEESSSSCEEEEEEEECS--SCHHHHHHHHHHHHTTCTTEEECCTTCCCCGGGGTTSSCEEEEEEEETTTTEEEEE
T ss_pred EEEEeeccccceeeeeeeeccc--ccchHHHHHHHHHHhhcCcEEEccccCCCCHhHccCCCcEEEEEEEcCCCCEEEEE
Confidence 9999999999999999999875 47899999999999999999999888899999999999999999999889999999
Q ss_pred EEehh
Q 015441 370 SVIDN 374 (406)
Q Consensus 370 ~v~DN 374 (406)
+++||
T Consensus 159 saiDN 163 (163)
T d1vkna2 159 SAIDN 163 (163)
T ss_dssp EEECT
T ss_pred EEecC
Confidence 99999
|
| >d2g17a2 d.81.1.1 (A:154-308) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=5.7e-37 Score=270.84 Aligned_cols=154 Identities=40% Similarity=0.634 Sum_probs=141.6
Q ss_pred ChHHHHHHHHHHHHHccCCCcc-eEEEEEeeccCccCcchhhcccHHHHhcCcccccCCcccchhhhhhhhccccCCCce
Q 015441 210 CYPTSIQLPLVPLIQANLIQYR-NIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTRHRHVPEIEQGLTGFASSKVT 288 (406)
Q Consensus 210 C~tta~~l~L~PL~~~~l~~i~-~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni~py~~~~h~h~pEi~~~l~~i~~~~~~ 288 (406)
||+|+++|+|+||.+.++++.+ .++|++++|+|||||++.+.+++. .+|++||++..|||+|||+|.|+. +
T Consensus 1 CyaTa~~l~L~PL~~~gli~~~~~i~i~a~SG~SGaG~~~~~~~~~~--~~~~~~Y~~~~HrH~pEI~q~l~~------~ 72 (155)
T d2g17a2 1 CYPTAAQLSLKPLIDGGLLDLTQWPVINATSGVSGAGRKAAISNSFC--EVSLQPYGVFTHRHQPEIAVHLGA------E 72 (155)
T ss_dssp HHHHHHHHHHHHHHHTTCBCTTSCCEEEEEECGGGGCSCCCSTTSGG--GCSEEECSTTTCTHHHHHHHHHTS------C
T ss_pred ChHHHHHHHHHHHHHcCCCCCCCceEEEeeeccccccccchhhhccc--cceeeeccccccccHHHHHHHhCc------C
Confidence 9999999999999999988755 578999999999999988887654 478999999999999999998843 6
Q ss_pred EEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCccccccccCCCcEEEEEEEeCcCCeEEE
Q 015441 289 VSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRTHNVRGSNYCLMNVFPDRIPGRAII 368 (406)
Q Consensus 289 v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~~~v~g~n~~~v~~~~~~~~~~~~~ 368 (406)
++|+||.+|++||+++|+|++++++++.+|++++|+++|+++|||+|.+++ .|++++|+|||+|+|++..+ .+++++
T Consensus 73 i~F~Phl~p~~RGIl~Ti~~~l~~~~s~~~i~~~~~~~Y~~e~FV~v~~~~-~p~~~~v~gtN~~~i~~~~~--~~~lvi 149 (155)
T d2g17a2 73 VIFTPHLGNFPRGILETITCRLKAGVTHAQVADVLQKAYGDKPLVRLYDKG-VPALKNVVGLPFCDIGFAVQ--GEHLIV 149 (155)
T ss_dssp CEEEEEEESSSSCEEEEEEEEBCTTCCHHHHHHHHHHHHTTCTTEEECSSS-CCCGGGTTTSCCEEEEEEEE--TTEEEE
T ss_pred ceeeecccccccccccccccccchhhhhHHHHHHHHHHHhhhhheEECCCC-CCcHhhcCCCCcEEEEEEEe--CCEEEE
Confidence 899999999999999999999999999999999999999999999998765 79999999999999998765 568999
Q ss_pred EEEehh
Q 015441 369 ISVIDN 374 (406)
Q Consensus 369 ~~v~DN 374 (406)
++++||
T Consensus 150 ~saiDN 155 (155)
T d2g17a2 150 VATEDN 155 (155)
T ss_dssp EEEECT
T ss_pred EEEccC
Confidence 999999
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=100.00 E-value=8e-34 Score=250.60 Aligned_cols=148 Identities=20% Similarity=0.326 Sum_probs=119.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcC--CCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANH--PYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~h--p~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
.||||+|||||+|+||+|+|.+| |..++..+++++++|+.+...++.+.. ....++++.++|++|+|+|++.
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~------~~~~~~~~~~~d~~f~~~~~~~ 75 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITI------EETTETAFEGVDIALFSAGSST 75 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEE------EECCTTTTTTCSEEEECSCHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccc------cccchhhhhhhhhhhhccCccc
Confidence 58999999999999999999999 788999999999999998876654322 2233556778999999999999
Q ss_pred hHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhcc-CCcEEecCCChHHHHHHHH
Q 015441 142 TQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIK-NARLVANPGCYPTSIQLPL 219 (406)
Q Consensus 142 s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~-~~~iVanPgC~tta~~l~L 219 (406)
+.++++.+ ++|++|||+|+|||+++ ++|+.+| |+|++.+. .+++||||||+||++++ |
T Consensus 76 s~~~~~~~~~~~~~VIDlSsdfR~~~--------~~~~~~p-----------e~n~~~~~~~~~iIAnPgC~tt~i~~-l 135 (154)
T d2gz1a1 76 SAKYAPYAVKAGVVVVDNTSYFRQNP--------DVPLVVP-----------EVNAHALDAHNGIIACPNAAWNSVQI-A 135 (154)
T ss_dssp HHHHHHHHHHTTCEEEECSSTTTTCT--------TSCBCCH-----------HHHGGGGGGCCSEEECCCTHHHHHHH-H
T ss_pred hhhHHhhhccccceehhcChhhhccC--------Ccccccc-----------hhhHHHhcCcCceEECCCCHHHHHHH-H
Confidence 99999865 78999999999999987 4565544 55555554 35799999999888876 7
Q ss_pred HHHHHccCCCcceEEEEEee
Q 015441 220 VPLIQANLIQYRNIIIDAKS 239 (406)
Q Consensus 220 ~PL~~~~l~~i~~i~v~t~~ 239 (406)
+||++++++ +..+..++|
T Consensus 136 ~PL~~~~li--k~~~~~~~~ 153 (154)
T d2gz1a1 136 ETLHERGLV--RPTAELKFE 153 (154)
T ss_dssp HHHHHTTCC--SCCSSCCSC
T ss_pred HHHHHhcCC--Cccceeeec
Confidence 999999865 444445554
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.98 E-value=3.1e-33 Score=244.33 Aligned_cols=139 Identities=20% Similarity=0.313 Sum_probs=114.1
Q ss_pred ccEEEEECcccHHHHHHHHHHH--cCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLA--NHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~--~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
+|||||+|||||+|+||+|+|. +||.+++..++|++++|+++.+.++.+. ++..+.+++.++|++|+|+|++
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~------~~~~~~~~~~~~d~vf~a~p~~ 75 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLR------VGDVDSFDFSSVGLAFFAAAAE 75 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEE------CEEGGGCCGGGCSEEEECSCHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccch------hccchhhhhccceEEEecCCcc
Confidence 3799999999999999999997 6999999999999999999987654432 2334456678899999999999
Q ss_pred chHHHHhhC-CCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCcEEecCCChHHHHHHHH
Q 015441 141 TTQEIIKGL-PKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPTSIQLPL 219 (406)
Q Consensus 141 ~s~~~~~~l-~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~iVanPgC~tta~~l~L 219 (406)
.+.++++.+ ++|++|||+|++||++++ +..+||+|++.+. +++++++|||||||||+++++|
T Consensus 76 ~s~~~~~~~~~~g~~VID~Ss~fR~~~~---------~~~vpevn~~~l~--------~~~~~~iIANPgC~t~~~ll~L 138 (144)
T d2hjsa1 76 VSRAHAERARAAGCSVIDLSGALEPSVA---------PPVMVSVNAERLA--------SQAAPFLLSSPAALNAVLLGEL 138 (144)
T ss_dssp HHHHHHHHHHHTTCEEEETTCTTTTTTS---------CBCCHHHHGGGGG--------GSCSSCEEECCCHHHHHHHHHH
T ss_pred hhhhhccccccCCceEEeechhhccccc---------ccccccccHHHHH--------hccCCCEEccCcHHHHHHHHHh
Confidence 999999876 789999999999999762 3344555544331 1356789999999999999999
Q ss_pred HHHHH
Q 015441 220 VPLIQ 224 (406)
Q Consensus 220 ~PL~~ 224 (406)
+|||+
T Consensus 139 ~~~h~ 143 (144)
T d2hjsa1 139 LIKHY 143 (144)
T ss_dssp HHHHC
T ss_pred hhhcc
Confidence 99985
|
| >d2hjsa2 d.81.1.1 (A:130-319) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.97 E-value=4e-32 Score=246.71 Aligned_cols=162 Identities=17% Similarity=0.228 Sum_probs=134.0
Q ss_pred ChHHH-HHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhcCc--ccc--cCCc----ccchhhhhh---
Q 015441 210 CYPTS-IQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGI--YSY--GVTR----HRHVPEIEQ--- 277 (406)
Q Consensus 210 C~tta-~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni--~py--~~~~----h~h~pEi~~--- 277 (406)
|++++ ++++|+||++. +++++++|+|||++||+|++++++ ++.|+...+ ++. ..+. .+.+|+|..
T Consensus 1 Cs~~~qL~~aL~PL~~~--~~i~rv~vsTyQavSGaG~~gv~e-L~~Qt~~ll~~~~~~~~~fp~~iafNviP~ig~~~~ 77 (190)
T d2hjsa2 1 CAVAAELCEVLAPLLAT--LDCRQLNLTACLSVSSLGREGVKE-LARQTAELLNARPLEPRLFDRQIAFNLLAQVGAVDA 77 (190)
T ss_dssp CHHHHHHHHHHHHHTTT--CCEEEEEEEEEECGGGGCHHHHHH-HHHHHHHHHTTCCCCCSSSSSCCTTCCBSSSSCBCT
T ss_pred ChhHHHHHHHHHHHHHh--hCceEEEEEEEechhhcCHHHHHH-HHHHHHHHhccccccccccchhhccccccccccccc
Confidence 88765 88999999998 689999999999999999999998 556665322 222 1222 345676632
Q ss_pred ------------hhccccC-CCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCCcccc
Q 015441 278 ------------GLTGFAS-SKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGVVPRT 344 (406)
Q Consensus 278 ------------~l~~i~~-~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~~P~~ 344 (406)
+..||++ +.+.|++||+||||++||+.+++++|+++++.++++++|+++ +.|.+.++..+|+|
T Consensus 78 ~g~t~EE~K~~~Et~KIL~~~~l~vs~TcvRVPV~~gHs~sv~ve~~~~i~~~e~~~~l~~~----~gv~~~d~~~~ptp 153 (190)
T d2hjsa2 78 EGHSAIERRIFAEVQALLGERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDAT----KGIEWVGEGDYPTV 153 (190)
T ss_dssp TSCBHHHHHHHHHHHHHTGGGBCCEEEEEEECSCSSCEEEEEEEEESSCCCHHHHHHHHHHS----TTEEECCTTCCCCC
T ss_pred cccchhhhhhhhhhhhhccCccccceeeeEEeehhhcchhheeeeeecCccHHHHHHHHHhC----CCCeeeccccCCCC
Confidence 2235676 457899999999999999999999999999999999999987 67888888889998
Q ss_pred c-cccCCCcEEEEEEEeC--cCCeEEEEEEehhhhHh
Q 015441 345 H-NVRGSNYCLMNVFPDR--IPGRAIIISVIDNLVKG 378 (406)
Q Consensus 345 ~-~v~g~n~~~v~~~~~~--~~~~~~~~~v~DNL~KG 378 (406)
. ++.|++.++|||+|.+ .++.+.+|++.||||||
T Consensus 154 ~~~~~g~d~v~VGRiR~d~~~~~~l~~w~v~DnlrkG 190 (190)
T d2hjsa2 154 VGDALGQDETYVGRVRAGQADPCQVNLWIVSDNVRKG 190 (190)
T ss_dssp CCCCTTSSCEEEEEEEECSSCTTEEEEEEEECCCCCC
T ss_pred cccccCCcCEEEEeeEcCCCCCCEEEEEEEeCCcccC
Confidence 7 7899999999999975 46789999999999998
|
| >d1t4ba2 d.81.1.1 (A:134-354) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=6.6e-32 Score=250.81 Aligned_cols=164 Identities=14% Similarity=0.122 Sum_probs=130.8
Q ss_pred CChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhc-----------------------------
Q 015441 209 GCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAE----------------------------- 259 (406)
Q Consensus 209 gC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~----------------------------- 259 (406)
||+|+.++++|+||+++ +++++|+|+|||++||||+++++++ ..|+..
T Consensus 1 NCst~~l~~aL~pL~~~--~~i~rv~vsTYQAvSGaG~~~v~EL-~~Q~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (221)
T d1t4ba2 1 NCTVSLMLMSLGGLFAN--DLVDWVSVATYQAASGGGARHMREL-LTQMGHLYGHVADELATPSSAILDIERKVTTLTRS 77 (221)
T ss_dssp CHHHHHHHHHHHHHHHT--TCEEEEEEEEEBCGGGTCHHHHHHH-HHHHHHHHHHTHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHH--hCceEEEEEhhhhhhhhcHHHHHHH-HHHHHhhhccccccccCchhhccchhhhhhhhccc
Confidence 79999999999999998 7899999999999999999999984 444321
Q ss_pred CcccccCCc----ccchhhhhh---------------hhccccC-CC-ceEEEEEEEeeecceeEEEEEEEeCCCCCHHH
Q 015441 260 GIYSYGVTR----HRHVPEIEQ---------------GLTGFAS-SK-VTVSFTPHLMPMIRGMQSTIYVEMAPGVTIED 318 (406)
Q Consensus 260 ni~py~~~~----h~h~pEi~~---------------~l~~i~~-~~-~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~ee 318 (406)
.-.|...+. ++.+|+|.. +..||++ +. ++|+.||+||||++||+++++++|+++++.+|
T Consensus 78 ~~~~~~~f~~~iAfNvIP~ig~~~e~G~t~EE~K~~~EtrKIL~~~~~i~VsaTcVRVPV~~gHsesv~ve~~~~i~~~e 157 (221)
T d1t4ba2 78 GELPVDNFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILNTSSVIPVDGLCVRVGALRCHSQAFTIKLKKDVSIPT 157 (221)
T ss_dssp TCSCCTTTSSCCTTCEESCCSCBCTTSCBHHHHHHHHHHHHHHTCSSCCCEEEECCEESCSSEEEEEEEEEESSCCCHHH
T ss_pred ccCCccccccccccccccCCccccccceechhHHHHHHHHhhhccccccceeeEEeeeehhccchheeeeehhhccchHH
Confidence 001112222 345676642 2235776 33 89999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCcEEecCC-----CCccccccccCCCcEEEEEEEeC--cCCeEEEEEEehhhhHh
Q 015441 319 LYQQLKISYEHEEFVKLLEK-----GVVPRTHNVRGSNYCLMNVFPDR--IPGRAIIISVIDNLVKG 378 (406)
Q Consensus 319 v~~~l~~~y~~~~fV~v~~~-----~~~P~~~~v~g~n~~~v~~~~~~--~~~~~~~~~v~DNL~KG 378 (406)
++++|.++. |++.+... ..||+|.++.|++.|+|||+|.+ .++.+.+|+++||||||
T Consensus 158 v~~~L~~~~---p~~~vv~~d~~~~~~~ptP~~~~G~d~V~VGRIR~D~~~~~~l~lw~v~DNL~kG 221 (221)
T d1t4ba2 158 VEELLAAHN---PWAKVVPNDREITMRELTPAAVTGTLTTPVGRLRKLNMGPEFLSAFTVGDQLLWG 221 (221)
T ss_dssp HHHHHHHHC---TTCCBCCSCHHHHHHHSSHHHHTTSSCCCEEEEEECTTCTTEEEEEEEEETTCCC
T ss_pred HHHHHhhcc---CCceEEecCcccccCCCCCHHHCCCCCeEEecccccCCCCCEEEEEEEecccccC
Confidence 999999874 34444322 23799999999999999999976 35789999999999998
|
| >d1mb4a2 d.81.1.1 (A:133-354) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=99.97 E-value=6.3e-32 Score=250.97 Aligned_cols=164 Identities=15% Similarity=0.151 Sum_probs=132.2
Q ss_pred CChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHh-------------------------cCcc-
Q 015441 209 GCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIA-------------------------EGIY- 262 (406)
Q Consensus 209 gC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~-------------------------~ni~- 262 (406)
||+|+.++++|+||++. +++++|+|+|||++||||++++++ +..|+. +.+.
T Consensus 1 NCsT~~l~~aL~pL~~~--~~i~rv~vsTYQAvSGaG~~gv~e-L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (222)
T d1mb4a2 1 NCTVSLMLMALGGLYER--GLVEWMSAMTYQAASGAGAQNMRE-LISQMGVINDAVSSELANPASSILDIDKKVAETMRS 77 (222)
T ss_dssp CHHHHHHHHHHHHHHHT--TCEEEEEEEEEBCGGGGCHHHHHH-HHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHHHHHH--hCeeEEEEeehhhhhhhcHHHHHH-HHHHHHhhhccchhhhcCcchhhccchhhhhhhccc
Confidence 79999999999999998 689999999999999999999998 444432 1111
Q ss_pred ---cccCCc----ccchhhhhh---------------hhccccC---CCceEEEEEEEeeecceeEEEEEEEeCCCCCHH
Q 015441 263 ---SYGVTR----HRHVPEIEQ---------------GLTGFAS---SKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIE 317 (406)
Q Consensus 263 ---py~~~~----h~h~pEi~~---------------~l~~i~~---~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~e 317 (406)
|...+. ++.+|+|.. +..||++ +.++|+.||+||||++||+++|+++|+++++.+
T Consensus 78 ~~~~~~~f~~~iAfNviP~i~~~~~~G~t~EE~K~~~EtrKIL~~~d~~i~VsaTCVRVPV~~gHsesV~ve~~~~is~~ 157 (222)
T d1mb4a2 78 GSFPTDNFGVPLAGSLIPWIDVKRDNGQSKEEWKAGVEANKILGLQDSPVPIDGTCVRIGAMRCHSQALTIKLKQNIPLD 157 (222)
T ss_dssp TTSSCTTTSSCCTBSEESCCSCBCSSSCBHHHHHHHHHHHHHHTCTTSCCCEECCCCEESBSSEEEEEEEEEESSCCCHH
T ss_pred CCCccccccccchhcccccccccccCCcccchHHHHHHHHHHhcCCCcccchhHHHHhhhhhhheeeeEEEEeeecccHH
Confidence 111222 345676632 1225664 449999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCcEEecCCC-----CccccccccCCCcEEEEEEEeCc--CCeEEEEEEehhhhHh
Q 015441 318 DLYQQLKISYEHEEFVKLLEKG-----VVPRTHNVRGSNYCLMNVFPDRI--PGRAIIISVIDNLVKG 378 (406)
Q Consensus 318 ev~~~l~~~y~~~~fV~v~~~~-----~~P~~~~v~g~n~~~v~~~~~~~--~~~~~~~~v~DNL~KG 378 (406)
|++++|+++. +++.+.+.+ .||+|.++.|++.|+|||+|.+. ++.+.+|++.||||||
T Consensus 158 e~~~~L~~~~---~~v~vi~~~~~~~~~~~tP~~~~g~d~V~VGRiR~d~~~~~~l~~wvv~DNLrKG 222 (222)
T d1mb4a2 158 EIEEMIATHN---DWVKVIPNERDITARELTPAKVTGTLSVPVGRLRKMAMGDDFLNAFTVGDQLLWG 222 (222)
T ss_dssp HHHHHHHTSC---SSEEECCSCHHHHHHHSSHHHHTTSSCEEEEEEEEETTEEEEEEEEEEEETTTTT
T ss_pred HHHHHHhccc---cccccccccccccCCCCChHHhcCCcceeeecCEecCCCCCEEEEEEEecccccC
Confidence 9999999863 577776532 38999999999999999999753 4688999999999998
|
| >d2gz1a2 d.81.1.1 (A:128-329) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.97 E-value=1.5e-31 Score=245.69 Aligned_cols=165 Identities=22% Similarity=0.300 Sum_probs=133.2
Q ss_pred ChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhc-------------CcccccC--C----ccc
Q 015441 210 CYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAE-------------GIYSYGV--T----RHR 270 (406)
Q Consensus 210 C~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~-------------ni~py~~--~----~h~ 270 (406)
|+|+.++++|+||+++ +++++|+|+|||++||||++|+++ +..|+.+ ++.|+.. + .++
T Consensus 1 Cst~~l~~aL~pL~~~--~gi~~v~vsTyQAvSGaG~~gv~e-L~~q~~~~l~~~~~~~~~~~~~~p~~~~~~~~~iafN 77 (202)
T d2gz1a2 1 CSTIQMMVALEPVRQK--WGLDRIIVSTYQAVSGAGMGAILE-TQRELREVLNDGVKPCDLHAEILPSGGDKKHYPIAFN 77 (202)
T ss_dssp HHHHHHHHHHHHHHHH--HCCCEEEEEEEBCGGGGCHHHHHH-HHHHHHHHHHHCCCGGGCCCSSSSCTTSSCCCCCTTC
T ss_pred CcHHHHHHHHHHHHHh--cCceEEEEEehHhHHhhhHHHHHH-HHHHHHHHhcccccccccchhcccccccccceehhhh
Confidence 9999999999999998 689999999999999999999998 5555532 1223321 1 245
Q ss_pred chhhhhhhh---------------ccccC-CCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEE
Q 015441 271 HVPEIEQGL---------------TGFAS-SKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVK 334 (406)
Q Consensus 271 h~pEi~~~l---------------~~i~~-~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~ 334 (406)
++|+|...+ .|+++ +.+.|+.||+||||++||+.+++++|+++++.++++++|.++ ++...+.
T Consensus 78 ~iP~i~~~~~~g~t~EE~k~~~E~~kIl~~~~~~vsatcvRVPV~~gHs~sv~ve~~~~~~~~~~~~~l~~~-~g~~~~d 156 (202)
T d2gz1a2 78 ALPQIDVFTDNDYTYEEMKMTKETKKIMEDDSIAVSATCVRIPVLSAHSESVYIETKEVAPIEEVKAAIAAF-PGAVLED 156 (202)
T ss_dssp CBCCCSCBCTTSSBHHHHHHHHHHHHHTTCTTSEEEEECCBCSCSSCEEEEEEEECSSCCCHHHHHHHHHTS-TTEEECC
T ss_pred hhhcccchhcccchhhhhHHhhhhcceecccccCcccceEEEEEeecceEEEEEeeehhccHHHHHHHHhcC-CCCceee
Confidence 677664322 24665 789999999999999999999999999999999999999987 4433332
Q ss_pred ecCCCCccccccccCCCcEEEEEEEeC--cCCeEEEEEEehhhhHh
Q 015441 335 LLEKGVVPRTHNVRGSNYCLMNVFPDR--IPGRAIIISVIDNLVKG 378 (406)
Q Consensus 335 v~~~~~~P~~~~v~g~n~~~v~~~~~~--~~~~~~~~~v~DNL~KG 378 (406)
..+++.+|+|.++.|++.++|||+|.+ .++.+.+|+++||||||
T Consensus 157 ~~~~~~~p~p~~~~g~~~v~VGRiR~d~~~~~~l~~w~v~DNlrkG 202 (202)
T d2gz1a2 157 DVAHQIYPQAINAVGSRDTFVGRIRKDLDAEKGIHMWVVSDNLLKG 202 (202)
T ss_dssp BGGGTBCCCHHHHTTCSSEEEEEEEECSSCTTEEEEEEEECTTTTT
T ss_pred ccccCCCCCChhhcCCCCEEEEeeEcCCCCCCEEEEEEEecccccC
Confidence 333456999999999999999999975 35689999999999998
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=99.94 E-value=1.7e-28 Score=214.40 Aligned_cols=135 Identities=16% Similarity=0.206 Sum_probs=99.3
Q ss_pred cEEEEECcccHHHHHHHHHHH---cCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLA---NHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~---~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
|||||+|||||+|+||+++|+ +||..++..++++++.|+.... ...........+.+.+.++|+||+|+|++
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~-----~~~~~~~~~~~~~~~~~~~DvvF~alp~~ 75 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNF-----GKDAGMLHDAFDIESLKQLDAVITCQGGS 75 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCS-----SSCCCBCEETTCHHHHTTCSEEEECSCHH
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccccccccccc-----CCcceeeecccchhhhccccEEEEecCch
Confidence 589999999999999999776 4788999999998888876542 22222222223344568999999999999
Q ss_pred chHHHHhhC-CCCC--EEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhcc--CCcEE---ecCCChH
Q 015441 141 TTQEIIKGL-PKSL--KIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIK--NARLV---ANPGCYP 212 (406)
Q Consensus 141 ~s~~~~~~l-~~G~--~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~--~~~iV---anPgC~t 212 (406)
+|+++++.+ ++|+ +|||+|+||||++ ++|+.+||+|++.+- +.++ ....+ +||+|+|
T Consensus 76 ~s~~~~~~l~~~g~~~~VIDlSsdfR~~~--------dvpl~lPEiN~~~I~-------~a~~~~~k~~~~~~~~p~~~~ 140 (147)
T d1mb4a1 76 YTEKVYPALRQAGWKGYWIDAASTLRMDK--------EAIITLDPVNLKQIL-------HGIHHGTKTFVGGAAEPLRRT 140 (147)
T ss_dssp HHHHHHHHHHHTTCCSEEEESSSTTTTCT--------TEEEECHHHHHHHHH-------HHHHTTCCEEEECTHHHHHHH
T ss_pred HHHHHhHHHHHcCCceEEEeCCccccccC--------CceEEeCCcCHHHHH-------HHHHcCCcceeeeccCcCHhH
Confidence 999999886 6775 5999999999998 466555555555431 1111 13455 9999998
Q ss_pred HHHHHH
Q 015441 213 TSIQLP 218 (406)
Q Consensus 213 ta~~l~ 218 (406)
.+++++
T Consensus 141 ~~~~~a 146 (147)
T d1mb4a1 141 LRIILA 146 (147)
T ss_dssp HHHHHH
T ss_pred hHHHhc
Confidence 777664
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=2.8e-24 Score=187.46 Aligned_cols=133 Identities=14% Similarity=0.169 Sum_probs=99.4
Q ss_pred ccEEEEECcccHHHHHHHHHHHc---CCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLAN---HPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~---hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
|+||||+|||||||++|+++|++ ||..++++++++++.|+.+..... ........+.+++.++|+||+|+|+
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~-----~~~~~~~~~~~~~~~~DivF~a~~~ 75 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGT-----TGTLQDAFDLEALKALDIIVTCQGG 75 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTC-----CCBCEETTCHHHHHTCSEEEECSCH
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCC-----ceeeecccchhhhhcCcEEEEecCc
Confidence 56999999999999999986654 488899999999999887764332 2222222233456799999999999
Q ss_pred cchHHHHhhC-CCCC--EEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhh-ccC-CcEEecCCChH
Q 015441 140 GTTQEIIKGL-PKSL--KIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISRED-IKN-ARLVANPGCYP 212 (406)
Q Consensus 140 ~~s~~~~~~l-~~G~--~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~-i~~-~~iVanPgC~t 212 (406)
++|+++++.+ ++|+ .|||+|++|||++ ++|+++||+|++.+-. .+.+ +++ -.+++||.|.+
T Consensus 76 ~~s~~~~~~~~~~g~~~~VID~Ss~fR~~~--------dvplviPEVN~~~i~~----~~~~g~~~~ig~~~~~~~~~ 141 (146)
T d1t4ba1 76 DYTNEIYPKLRESGWQGYWIDAASSLRMKD--------DAIIILDPVNQDVITD----GLNNGIRTFVGGAAEPLRRM 141 (146)
T ss_dssp HHHHHHHHHHHHTTCCCEEEECSSTTTTCT--------TEEEECHHHHHHHHHH----HHHTTCCEEEECCCHHHHHH
T ss_pred hHHHHhhHHHHhcCCCeecccCCcccccCC--------CCcEECCCcCHHHHHH----HHHcCCceEEeccCcHHHHH
Confidence 9999999876 6775 5999999999998 6899999999887621 1111 111 13578888853
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=99.79 E-value=1.8e-20 Score=164.94 Aligned_cols=141 Identities=17% Similarity=0.320 Sum_probs=101.3
Q ss_pred CCccEEEEECcccHHHHH-HHHHHHcCCCceEEEEeccCcCCccccccccCccccCC--Ccccc-cCcccCCCCCEEEEc
Q 015441 61 EKQVRIGLLGASGYTGAE-IVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDL--PTMVA-VKDADFSNVDAVFCC 136 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~e-LlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~--~~~~~-~~~~~~~~vDvVF~a 136 (406)
.+++||||+| +|.+|++ ++++|.+||.+|++++++++..++.+..... + +... ..++. ++..++.++|+||+|
T Consensus 2 ~kkirvaIIG-aG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~-~-~i~~~~~~~d~l~~~~~~~~iDiVf~A 78 (157)
T d1nvmb1 2 NQKLKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQR-M-GVTTTYAGVEGLIKLPEFADIDFVFDA 78 (157)
T ss_dssp CSCEEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHH-T-TCCEESSHHHHHHHSGGGGGEEEEEEC
T ss_pred CCCcEEEEEc-CcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhh-c-CCcccccceeeeeecccccccCEEEEc
Confidence 4569999999 9999987 5678888999999999998766543322110 0 0000 00111 112345689999999
Q ss_pred CCCcchHH--HHhh-CCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCcEEecCCChHH
Q 015441 137 LPHGTTQE--IIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVANPGCYPT 213 (406)
Q Consensus 137 l~~~~s~~--~~~~-l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~iVanPgC~tt 213 (406)
||++...+ +++. +++|+.|||+|++. ++|+++||+|++...+ .++.++|+||||.|.
T Consensus 79 Tpag~h~~~~~~~~aa~~G~~VID~s~a~------------~vplvVPevN~~~~~~--------~~n~nlitc~~~~ti 138 (157)
T d1nvmb1 79 TSASAHVQNEALLRQAKPGIRLIDLTPAA------------IGPYCVPVVNLEEHLG--------KLNVNMVTYAGNLDI 138 (157)
T ss_dssp SCHHHHHHHHHHHHHHCTTCEEEECSTTC------------SSCBCCHHHHTTTTTT--------CSEEECCCTCHHHHH
T ss_pred CCchhHHHhHHHHHHHHcCCEEEEccccc------------cceEEccCcCHHHHhc--------CCCCCeEecCchHHH
Confidence 99875543 4443 58899999999962 4899999999886533 123479999999999
Q ss_pred HHHHHHHHHHH
Q 015441 214 SIQLPLVPLIQ 224 (406)
Q Consensus 214 a~~l~L~PL~~ 224 (406)
.++.+|.|+++
T Consensus 139 p~~~al~~~~~ 149 (157)
T d1nvmb1 139 MTSAALATAER 149 (157)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999987
|
| >d1cf2o2 d.81.1.1 (O:139-303) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=99.76 E-value=2.4e-19 Score=158.98 Aligned_cols=132 Identities=14% Similarity=0.155 Sum_probs=102.2
Q ss_pred CChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhcCcccccCCc-ccchhhhhhhhccccCCCc
Q 015441 209 GCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVTR-HRHVPEIEQGLTGFASSKV 287 (406)
Q Consensus 209 gC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni~py~~~~-h~h~pEi~~~l~~i~~~~~ 287 (406)
+|+|++++++|+||+++ |+++++.++|+|++||.|+.+.. ...|+.|+.... ..+..|+...| ++
T Consensus 1 SCtT~~l~~~lkpL~~~--fgI~~~~vtT~qa~s~~~~~~~~------~~~niip~~~~~~~~~~~e~~kil------~~ 66 (165)
T d1cf2o2 1 SCNTTGLCRTLKPLHDS--FGIKKVRAVIVRRGADPAQVSKG------PINAIIPNPPKLPSHHGPDVKTVL------DI 66 (165)
T ss_dssp CHHHHHHHHHHHHHHHH--HCEEEEEEEEEEESSCTTCTTCC------CSSCCEESSSSSSCTHHHHHHTTS------CC
T ss_pred CChHHHHHHHHHHHHHH--cCceEEEEEEEECCcCCcccccc------ccccccCCCcHHHHHHHHHhhhhc------CC
Confidence 69999999999999998 79999999999999999987644 356888875543 33445554433 35
Q ss_pred eEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCCC---ccccccccCCCcEEEEEEEeC
Q 015441 288 TVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKGV---VPRTHNVRGSNYCLMNVFPDR 361 (406)
Q Consensus 288 ~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~~---~P~~~~v~g~n~~~v~~~~~~ 361 (406)
+|+.+|+|||+++||+.+++++|+++++.||++++|+++ +.|.+.+... +|.+....+.+ +||.|.+
T Consensus 67 ~i~~tavRVPv~~~H~~~v~v~~~~~~t~eev~~~l~~~----~~v~l~~~~~~~~~~~~~~~~~~d---vGR~R~D 136 (165)
T d1cf2o2 67 NIDTMAVIVPTTLMHQHNVMVEVEETPTVDDIIDVFEDT----PRVILISAEDGLTSTAEIMEYAKE---LGRSRND 136 (165)
T ss_dssp CEEEEEEEESCCSCEEEEEEEEESSCCCHHHHHHHHHHS----TTEEEECTTTTCCSHHHHHHHHHH---HTCGGGC
T ss_pred cEEEEEEecCccceEEEEEEEEECCcCCHHHHHHHHHHC----CCCccccCccCCCCCcchhhhccc---CCCccCc
Confidence 799999999999999999999999999999999999997 6677766432 34443333332 5655543
|
| >d1b7go2 d.81.1.1 (O:139-300) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.68 E-value=1e-17 Score=147.94 Aligned_cols=111 Identities=10% Similarity=0.131 Sum_probs=88.5
Q ss_pred ChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhcCcccccCC--cccchhhhhhhhccccCCCc
Q 015441 210 CYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYGVT--RHRHVPEIEQGLTGFASSKV 287 (406)
Q Consensus 210 C~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni~py~~~--~h~h~pEi~~~l~~i~~~~~ 287 (406)
|+|++++++|+||+++ ++++++.++|+|++||+|+..... ..++.|+... .|.+ ..+... .+++
T Consensus 1 CsT~~l~~~lkpL~~~--fgi~rv~vtt~qa~s~~g~~~~~~------~~~~~~~p~~~~~~~~-~~v~~~-----~p~l 66 (162)
T d1b7go2 1 CNTTALLRTICTVNKV--SKVEKVRATIVRRAADQKEVKKGP------INSLVPDPATVPSHHA-KDVNSV-----IRNL 66 (162)
T ss_dssp HHHHHHHHHHHHHHTT--SCEEEEEEEEEEESSCTTCCSCCC------SSCCEESSSSSSCTHH-HHHHTT-----STTC
T ss_pred CcHHHHHHHHHHHHHH--hCEEEEEEEEEeeccCCccccccc------cccccccccccccccc-eeeecc-----CCCc
Confidence 9999999999999998 799999999999999999875443 3466666432 2311 122111 2467
Q ss_pred eEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCC
Q 015441 288 TVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEK 338 (406)
Q Consensus 288 ~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~ 338 (406)
+|+.+|+||||++||+.+++++|+++++.|||+++|+++ +.+.+.+.
T Consensus 67 ~i~~tavRVPv~~~h~~~~~~~~~~~~~~eev~~~l~~~----~~i~l~~~ 113 (162)
T d1b7go2 67 DIATMAVIAPTTLMHMHFINITLKDKVEKKDILSVLENT----PRIVLISS 113 (162)
T ss_dssp EEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHTC----TTEEEECS
T ss_pred eEEEEEEEcCCCcceEEEEEEEECCcCCHHHHHHHHHhC----CCCcccCc
Confidence 899999999999999999999999999999999999987 56666543
|
| >d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=9e-16 Score=135.33 Aligned_cols=139 Identities=17% Similarity=0.176 Sum_probs=102.9
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-----ccccccccCccc-------------cCCCcccccCc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-----QSIGSVFPHLIS-------------QDLPTMVAVKD 124 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-----~~i~~v~p~l~~-------------~~~~~~~~~~~ 124 (406)
++||||+| .|++||.++|++.++|+++++++.+..+.. .+++++|+.|.. ..+......++
T Consensus 1 tikigING-FGRIGR~v~R~~~~~~~i~ivaINd~~~~~~~ayLl~yDSvhG~~~~~v~~~~~~l~ing~~I~i~~~~~p 79 (166)
T d1gado1 1 TIKVGING-FGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDP 79 (166)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTCSSEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred CeEEEEEC-CcHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHhhhheecCCCCCcCCeEEEeCCEEEECCEEEEEEeCCCh
Confidence 47999999 999999999999999999999999754322 357777776642 22222222223
Q ss_pred c--cCC--CCCEEEEcCCCcchHHHHhh-CCCCC-EEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhh
Q 015441 125 A--DFS--NVDAVFCCLPHGTTQEIIKG-LPKSL-KIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISRED 198 (406)
Q Consensus 125 ~--~~~--~vDvVF~al~~~~s~~~~~~-l~~G~-~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~ 198 (406)
. .|. ++|+|+.|+|...+++-++. +++|+ +|| +|++- +| ..+ ..+|| +|+++
T Consensus 80 ~~i~W~~~gvDiViEcTG~f~t~~~~~~hl~~gakkVi-iSaP~--~d--------~~~--------~iV~G---vN~~~ 137 (166)
T d1gado1 80 ANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVV-MTGPS--KD--------NTP--------MFVKG---ANFDK 137 (166)
T ss_dssp GGGCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEE-ESSCC--SS--------SCC--------BCCTT---TTGGG
T ss_pred HHCCccccCCCEEEEccccccCHHHHHHHhcCCCceEE-eeccc--cc--------cCC--------EEEeC---ccccc
Confidence 3 353 89999999999999887765 66774 677 67753 23 122 34677 78888
Q ss_pred ccCCcEEecCCChHHHHHHHHHHHHH
Q 015441 199 IKNARLVANPGCYPTSIQLPLVPLIQ 224 (406)
Q Consensus 199 i~~~~iVanPgC~tta~~l~L~PL~~ 224 (406)
+..+++||+++|+|+|+++.++.|.+
T Consensus 138 ~~~~~iiS~aSCTTnclaPv~kvl~~ 163 (166)
T d1gado1 138 YAGQDIVSNASNETGYSNKVLDLIAH 163 (166)
T ss_dssp CCSCSEEECCCTTHHHHHHHHHHHHH
T ss_pred cCCCCEEEeccHHHhHHHHHHHHHHH
Confidence 88789999999999999999988854
|
| >d2czca1 d.81.1.1 (A:140-301) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.62 E-value=1.4e-16 Score=140.26 Aligned_cols=130 Identities=14% Similarity=0.166 Sum_probs=99.6
Q ss_pred CChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccHHHHhcCccccc-CCcccchhhhhhhhccccCCCc
Q 015441 209 GCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLYSEIAEGIYSYG-VTRHRHVPEIEQGLTGFASSKV 287 (406)
Q Consensus 209 gC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~~e~~~ni~py~-~~~h~h~pEi~~~l~~i~~~~~ 287 (406)
+|+||+++++|+||++. +++.++++...++..|-..+ ....|+.|+. ...| |.+|+... +++
T Consensus 1 SC~T~~l~~~L~pL~~~--~~~~rvv~vr~a~dp~~~~~--------~i~~nviP~~~~~~~-~~~d~~~v------~~i 63 (162)
T d2czca1 1 SCNTTGLVRTLSAIREY--ADYVYAVMIRRAADPNDTKR--------GPINAIKPTVEVPSH-HGPDVQTV------IPI 63 (162)
T ss_dssp CHHHHHHHHHHHHHGGG--EEEEEEEEEEESSCTTCCSC--------CCSSCCEECCSSSCT-HHHHHTTT------SCC
T ss_pred CChHHHHHHHHHHHHHH--hCceEEEEECcccCcccccC--------CcccccccCCCCCCc-cchhhccc------CCe
Confidence 69999999999999988 57888887655444433222 3456888885 3333 45555332 457
Q ss_pred eEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCCCcEEecCCC---CccccccccCCCcEEEEEEEeCc
Q 015441 288 TVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHEEFVKLLEKG---VVPRTHNVRGSNYCLMNVFPDRI 362 (406)
Q Consensus 288 ~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~~fV~v~~~~---~~P~~~~v~g~n~~~v~~~~~~~ 362 (406)
+|+.||+||||++||+.+++++|+++++.+|++++|+++ |.|.+.+.. .+|++....|.+ +||.|.+.
T Consensus 64 ~v~~t~vRVPv~~gH~~~v~ve~~~~~~~~ev~~~l~~~----pgi~v~d~~~~~~~~~~~~~~grD---vGR~R~Dl 134 (162)
T d2czca1 64 NIETMAFVVPTTLMHVHSVMVELKKPLTKDDVIDIFENT----TRVLLFEKEKGFDSTAQIIEFARD---LHREWNNL 134 (162)
T ss_dssp CEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHTS----TTEEEECGGGTCCSHHHHHHHHHH---TTCGGGCC
T ss_pred EEEEEEEEeeeeeeeEEEEEEEECCCCCHHHHHHHHHHC----CCCEEecCCCCCCCccchhhhhcc---CCCCcCcc
Confidence 899999999999999999999999999999999999987 778887643 477777777776 78777654
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.60 E-value=4.9e-16 Score=138.97 Aligned_cols=146 Identities=12% Similarity=0.091 Sum_probs=98.4
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCcc------ccccccCccc------cCCCcccccCcccCCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQS------IGSVFPHLIS------QDLPTMVAVKDADFSNV 130 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~------i~~v~p~l~~------~~~~~~~~~~~~~~~~v 130 (406)
|+||||+| +|++||.++|+|.++|++|++++++....... ....+..+.. ..++....+ ++.+.++
T Consensus 1 MIKVaING-fGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~-~~~~~~v 78 (178)
T d1b7go1 1 MVNVAVNG-YGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTV-EDLIKTS 78 (178)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCH-HHHHHHC
T ss_pred CeEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCch-hhhhhcC
Confidence 78999999 99999999999999999999999975432110 1111111110 111100001 1122579
Q ss_pred CEEEEcCCCcchHHHHhh-CCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhcc--CC-cEEe
Q 015441 131 DAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIK--NA-RLVA 206 (406)
Q Consensus 131 DvVF~al~~~~s~~~~~~-l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~--~~-~iVa 206 (406)
|+|+.|+|.+.+++.++. +++|++|| ++++- +++ ..+ ...+|| +|++++. ++ ++||
T Consensus 79 DiViecTG~f~~~e~a~~hl~~G~KvI-i~~~~--~~~-------~~~-------~t~V~G---vN~~~~~~~~~~~vVS 138 (178)
T d1b7go1 79 DIVVDTTPNGVGAQYKPIYLQLQRNAI-FQGGE--KAE-------VAD-------ISFSAL---CNYNEALGKKYIRVVS 138 (178)
T ss_dssp SEEEECCSTTHHHHHHHHHHHTTCEEE-ECTTS--CGG-------GSS-------CEECHH---HHHHHHTTCSEEEECC
T ss_pred CEEEECCCCcCCHHHHHHHHHcCCEEE-EECCC--Ccc-------ccC-------CeEEeC---cchHHhcCCCCCEEEe
Confidence 999999999999988876 47888888 45431 111 011 135677 7877753 22 6999
Q ss_pred cCCChHHHHHHH------------HHHHHHccCCCcce
Q 015441 207 NPGCYPTSIQLP------------LVPLIQANLIQYRN 232 (406)
Q Consensus 207 nPgC~tta~~l~------------L~PL~~~~l~~i~~ 232 (406)
|.+|+|+++++. ++.|.+. +||++
T Consensus 139 nAscttn~lap~~~~~~~~~~~~~~kv~~~~--~gi~~ 174 (178)
T d1b7go1 139 ESIVVPENIDAIRASMKLMSAEDSMRITNES--LGILK 174 (178)
T ss_dssp TTTHHHHHHHHHHHHTTCSCHHHHHHHHHHH--TTCCC
T ss_pred CCcccccccHHHHHHHHhhccccceeeeccc--cceee
Confidence 999999999999 9999987 77764
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=99.55 E-value=3e-16 Score=139.53 Aligned_cols=144 Identities=13% Similarity=0.098 Sum_probs=96.1
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCc-----ccc-ccccCccc-------cCCCcccccCcccCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQ-----SIG-SVFPHLIS-------QDLPTMVAVKDADFSN 129 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~-----~i~-~v~p~l~~-------~~~~~~~~~~~~~~~~ 129 (406)
|+||||+| +|++||.++|+|..+++++++++++...... .+. ..+..... ..+..-... .+.+.+
T Consensus 1 M~~VgING-fGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~-~~~~~~ 78 (171)
T d1cf2o1 1 MKAVAING-YGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTV-DDMLDE 78 (171)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEH-HHHHHT
T ss_pred CeEEEEEc-CcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCCh-hHhhcC
Confidence 68999999 9999999999999999999999997542211 111 00000000 011100000 112368
Q ss_pred CCEEEEcCCCcchHHHHhh-CCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccC--CcEEe
Q 015441 130 VDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKN--ARLVA 206 (406)
Q Consensus 130 vDvVF~al~~~~s~~~~~~-l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~--~~iVa 206 (406)
+|+|+.|+|.+.+++.++. +++|+++|-.+++ +++ +.+ ...+|| +|++++.. +.+|+
T Consensus 79 vDvViEcTG~f~~~~~~~~hl~~G~K~vi~~~~---~~~-------~~~-------~~~v~G---vN~~~~~~~~~~ivS 138 (171)
T d1cf2o1 79 ADIVIDCTPEGIGAKNLKMYKEKGIKAIFQGGE---KHE-------DIG-------LSFNSL---SNYEESYGKDYTRVV 138 (171)
T ss_dssp CSEEEECCSTTHHHHHHHHHHHTTCEEEECTTS---CHH-------HHS-------CEECHH---HHHHHHTTCSEEEEC
T ss_pred CCEEEEccCCCCCHHHHHHHHHcCCCEEEECCC---Ccc-------CCC-------ceeEec---cChhhhcCCCCcEEE
Confidence 9999999999999887765 5889988844443 111 011 124677 67766543 45899
Q ss_pred cCCChHHHHHHHHHHHHHccCCCc
Q 015441 207 NPGCYPTSIQLPLVPLIQANLIQY 230 (406)
Q Consensus 207 nPgC~tta~~l~L~PL~~~~l~~i 230 (406)
|++|+|+++++.+++|+++ ||+
T Consensus 139 ~aSCTTNclapv~kvl~~~--fGi 160 (171)
T d1cf2o1 139 IVPENVDAVRAILEMEEDK--YKS 160 (171)
T ss_dssp THHHHHHHHHHHTTSCSCH--HHH
T ss_pred ECCchHHhHHHHHHHHHHH--cCc
Confidence 9999999999999999887 553
|
| >d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]
Probab=99.53 E-value=1.7e-14 Score=127.81 Aligned_cols=136 Identities=17% Similarity=0.208 Sum_probs=100.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-----ccccccccCccc-------------cCCCcccccCcc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-----QSIGSVFPHLIS-------------QDLPTMVAVKDA 125 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-----~~i~~v~p~l~~-------------~~~~~~~~~~~~ 125 (406)
+||||+| .|++||.++|++.+.|+++++++++..... .+++++|+.+.. +.+......++.
T Consensus 2 ikIgING-fGRIGR~v~R~~l~~~~~~ivaINd~~d~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~p~ 80 (171)
T d3cmco1 2 VKVGING-FGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPE 80 (171)
T ss_dssp EEEEEES-CSHHHHHHHHHHTTCTTEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred eEEEEEC-CCHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHhhhhcccccCCcccccccccCCCEEeCCcceeeEecCCHH
Confidence 7999999 999999999999999999999999754332 256777766542 222222222222
Q ss_pred --cCC--CCCEEEEcCCCcchHHHHhh-CCCCC-EEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhc
Q 015441 126 --DFS--NVDAVFCCLPHGTTQEIIKG-LPKSL-KIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDI 199 (406)
Q Consensus 126 --~~~--~vDvVF~al~~~~s~~~~~~-l~~G~-~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i 199 (406)
.|. ++|+|+.|+|...+++-++. +.+|+ +|| +|++. ++ .+ ...+|| +|++++
T Consensus 81 ~i~W~~~~vDiViEcTG~f~t~~~~~~hl~~gakkVi-iSap~--~d---------~~-------~t~V~G---vN~~~~ 138 (171)
T d3cmco1 81 NLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVI-ISAPA--KN---------ED-------ITIVMG---VNQDKY 138 (171)
T ss_dssp GCCTGGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEE-ESSCC--BS---------CS-------EECCTT---TSGGGC
T ss_pred HccccccCCcEEEEecCccCCHHHHHHHHhCCCceEE-Eeccc--cc---------cc-------ceeeec---cchhee
Confidence 353 79999999999999887765 56665 666 67653 22 11 245788 788888
Q ss_pred c--CCcEEecCCChHHHHHHHHHHH
Q 015441 200 K--NARLVANPGCYPTSIQLPLVPL 222 (406)
Q Consensus 200 ~--~~~iVanPgC~tta~~l~L~PL 222 (406)
. +.++|||.+|+|+|+++.++-|
T Consensus 139 ~~~~~~iIS~aSCTtn~laPv~kvl 163 (171)
T d3cmco1 139 DPKAHHVISNASNETGYSHRVVDLA 163 (171)
T ss_dssp CTTTCCEEECCCTTHHHHHHHHHHH
T ss_pred cCCCCeEEEehhHHHhHHHHHHHHH
Confidence 5 4789999999999999999987
|
| >d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]
Probab=99.53 E-value=1.1e-14 Score=128.79 Aligned_cols=141 Identities=16% Similarity=0.143 Sum_probs=102.8
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEeccC-cCC-----ccccccccCccc-------------cCCCcccccCcc
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR-KAG-----QSIGSVFPHLIS-------------QDLPTMVAVKDA 125 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~-~~G-----~~i~~v~p~l~~-------------~~~~~~~~~~~~ 125 (406)
||||+| .|++||.++|++.+++ ++++++.+.. +.. .+++++|+.|.. +.+......+++
T Consensus 2 kIgING-fGRIGR~~~R~~~~~~-~~ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~p~ 79 (169)
T d1dssg1 2 KIGING-FGRIGRLVLRAALEMG-AQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKPE 79 (169)
T ss_dssp CEEEEC-CSHHHHHHHHHHHHHT-CCEEEEECTTSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred eEEEEC-CcHHHHHHHHHHHhCC-CcEEEECCCCcCHHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCChH
Confidence 799999 9999999999998765 6999998742 221 357777776642 222222222223
Q ss_pred --cCC--CCCEEEEcCCCcchHHHHhh-CCCCC-EEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhc
Q 015441 126 --DFS--NVDAVFCCLPHGTTQEIIKG-LPKSL-KIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDI 199 (406)
Q Consensus 126 --~~~--~vDvVF~al~~~~s~~~~~~-l~~G~-~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i 199 (406)
+|. ++|+|+.|+|...+.+-++. +++|+ +|| +|++- +| .+ ..+|| +|++++
T Consensus 80 ~i~W~~~gvD~ViEcTG~f~~~~~~~~hl~~gakkVi-isaP~--~d---------~~--------~iV~G---VN~~~~ 136 (169)
T d1dssg1 80 NIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVI-ISAPS--AD---------AP--------MFVCG---VNLEKY 136 (169)
T ss_dssp GCCHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEE-ESSCC--SS---------SC--------BCCTT---TSGGGC
T ss_pred HCCccccCCCEEEecCceEcCHHHHHHHHhcCCceEe-ecCCc--cc---------cc--------eeeec---cccccc
Confidence 353 89999999999999987765 67775 666 67753 22 22 35788 788888
Q ss_pred c-CCcEEecCCChHHHHHHHHHHHHHccCCCcce
Q 015441 200 K-NARLVANPGCYPTSIQLPLVPLIQANLIQYRN 232 (406)
Q Consensus 200 ~-~~~iVanPgC~tta~~l~L~PL~~~~l~~i~~ 232 (406)
. +.++|||.+|+|+|+++.++.|++. |++++
T Consensus 137 ~~~~~IIS~aSCTtn~laP~~k~l~~~--fgIe~ 168 (169)
T d1dssg1 137 SKDMKVVSNASNEFGYSQRVIDLIKHM--QKVDS 168 (169)
T ss_dssp CTTCCEEECCCTTHHHHHHHHHHHHHH--HHHHT
T ss_pred CCCCCEEEChhHHHHHHHHHHHHHHHh--cCccc
Confidence 5 4689999999999999999999998 67653
|
| >d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Human(Homo sapiens), liver isoform [TaxId: 9606]
Probab=99.52 E-value=3.3e-14 Score=125.72 Aligned_cols=138 Identities=17% Similarity=0.170 Sum_probs=100.1
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccC-cCC-----ccccccccCccc-------------cCCCcccccC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR-KAG-----QSIGSVFPHLIS-------------QDLPTMVAVK 123 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~-~~G-----~~i~~v~p~l~~-------------~~~~~~~~~~ 123 (406)
++||||+| .|++||.++|++.+.++++++++.+.. +.. .+++++|+.|.. +.+......+
T Consensus 1 kikIgING-FGRIGR~v~R~~~~~~~~~ivaINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~~~~ 79 (169)
T d1u8fo1 1 KVKVGVNG-FGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERD 79 (169)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSS
T ss_pred CcEEEEEC-CcHHHHHHHHHHHHCCCcEEEEecCCCccHHHHHHHHhhccccCCcCCeEEEECCEEEECCEEEEEEECCC
Confidence 48999999 999999999999988999999998742 211 256777776542 2222222112
Q ss_pred --cccCC--CCCEEEEcCCCcchHHHHhh-CCCCC-EEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchh
Q 015441 124 --DADFS--NVDAVFCCLPHGTTQEIIKG-LPKSL-KIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISRE 197 (406)
Q Consensus 124 --~~~~~--~vDvVF~al~~~~s~~~~~~-l~~G~-~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~ 197 (406)
+-.|. ++|+|+.|+|...+.+-+.. +.+|+ +|| +|++. ++ .+ ..+|| +|++
T Consensus 80 p~~i~W~~~~vDiViEcTG~f~~~~~~~~hl~~gakkVi-iSaP~--~d---------~~--------tiV~G---vN~~ 136 (169)
T d1u8fo1 80 PSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVI-ISAPS--AD---------AP--------MFVMG---VNHE 136 (169)
T ss_dssp GGGCCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEE-ESSCC--SS---------SC--------BCCTT---TTGG
T ss_pred hhhCCccccCCCEEEEecceeccHHHHHHHHhcCCceEe-ecccc--cc---------cc--------eEEee---cCHH
Confidence 22453 79999999999999887765 67775 566 67753 22 22 34778 7888
Q ss_pred hccC-CcEEecCCChHHHHHHHHHHHHH
Q 015441 198 DIKN-ARLVANPGCYPTSIQLPLVPLIQ 224 (406)
Q Consensus 198 ~i~~-~~iVanPgC~tta~~l~L~PL~~ 224 (406)
++.. .++|||.+|+|+++++.++.|..
T Consensus 137 ~~~~~~~iIS~aSCTtn~~aPv~~vl~~ 164 (169)
T d1u8fo1 137 KYDNSLKIISNASNEFGYSNRVVDLMAH 164 (169)
T ss_dssp GCCTTCSEEECCCTTHHHHHHHHHHHHH
T ss_pred HcCCCCCEEECccHHHHHHHHHHHHHHH
Confidence 8864 58999999999999999988854
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.50 E-value=5e-15 Score=131.64 Aligned_cols=148 Identities=11% Similarity=0.022 Sum_probs=97.7
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCc-----c--ccccccCccc------cCCCcccccCcccCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQ-----S--IGSVFPHLIS------QDLPTMVAVKDADFS 128 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~-----~--i~~v~p~l~~------~~~~~~~~~~~~~~~ 128 (406)
|++||||+| +|++||.++|.|.++|++|++++++...... . +...+..... ..++.-..+ ++.+.
T Consensus 1 M~irIaING-fGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 78 (172)
T d2czca2 1 MKVKVGVNG-YGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTL-NDLLE 78 (172)
T ss_dssp CCEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBH-HHHHT
T ss_pred CcEEEEEEC-CCHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchh-hhhhc
Confidence 789999999 9999999999999999999999997543211 0 1111111000 001000000 11236
Q ss_pred CCCEEEEcCCCcchHHHHhh-CCCCCEEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhccCCcEEec
Q 015441 129 NVDAVFCCLPHGTTQEIIKG-LPKSLKIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDIKNARLVAN 207 (406)
Q Consensus 129 ~vDvVF~al~~~~s~~~~~~-l~~G~~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i~~~~iVan 207 (406)
++|+|+.|+|.+.+++.++. +++|++.|-.|++= ++ ..+ ...+|| +|++++.+.+.+++
T Consensus 79 ~vDvViEcTG~f~~~~~~~~hl~~G~k~Vi~s~~~--~~--------~~~-------~t~v~G---vNh~~~~~~~~~~v 138 (172)
T d2czca2 79 KVDIIVDATPGGIGAKNKPLYEKAGVKAIFQGGEK--AD--------VAE-------VSFVAQ---ANYEAALGKNYVRV 138 (172)
T ss_dssp TCSEEEECCSTTHHHHHHHHHHHHTCEEEECTTSC--GG--------GSS-------EEECHH---HHGGGGTTCSEEEE
T ss_pred cCCEEEECCCCCCCHHHHHHHHHcCCCEEEECCCC--cc--------cCC-------CeeEec---ccchhhcCCCceEE
Confidence 89999999999999998876 57888777566641 11 011 135677 78777766555555
Q ss_pred CCC--hHHHHHHHHHHHHHccCCCcceE
Q 015441 208 PGC--YPTSIQLPLVPLIQANLIQYRNI 233 (406)
Q Consensus 208 PgC--~tta~~l~L~PL~~~~l~~i~~i 233 (406)
.+| +|+++++.++.|.+. ++++++
T Consensus 139 ~scsctTn~lap~~kvld~~--~gIe~~ 164 (172)
T d2czca2 139 VVIPENIDAIRAMFELADKW--DSIKKT 164 (172)
T ss_dssp CTHHHHHHHHHHHTTCSCHH--HHHHHH
T ss_pred EecCchHHHHHHHHHHHhhh--cCeeEe
Confidence 555 999999999998887 677653
|
| >d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.50 E-value=2.7e-14 Score=128.69 Aligned_cols=145 Identities=17% Similarity=0.179 Sum_probs=102.5
Q ss_pred CccEEEEECcccHHHHHHHHHHHc----CCCceEEEEeccC-cCC-----ccccccccCcccc------C-------CCc
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLAN----HPYFGIKLMTADR-KAG-----QSIGSVFPHLISQ------D-------LPT 118 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~----hp~~elv~l~s~~-~~G-----~~i~~v~p~l~~~------~-------~~~ 118 (406)
|++||||+| .|++||.++|.+.+ .+.++++++.+.. +.. .+++++|+.|.+. . ...
T Consensus 1 M~ikigING-FGRIGR~vlR~~~~~~~~~~~i~iv~Ind~~~~~~~~ayLlkyDSvhG~~~~~v~~~~~~~~~~~~~~~i 79 (190)
T d1k3ta1 1 MPIKVGING-FGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLV 79 (190)
T ss_dssp CCEEEEEEC-CSHHHHHHHHHHHHTTCBTTTEEEEEEEESCCCHHHHHHHHHEETTTEECSSCEEEECSSTTCSSCCEEE
T ss_pred CCeEEEEEC-CChHHHHHHHHHHHcCCCCCCeEEEEEecCCCCHHHHHHHhhccccccCCCceEEEccCccccccccceE
Confidence 679999999 99999999997764 3678999998653 221 3577777665320 0 000
Q ss_pred --------c-cccCccc--CC--CCCEEEEcCCCcchHHHHhh-CCCCC-EEEEcCCcccCCCccchhhhcCCCCCCccc
Q 015441 119 --------M-VAVKDAD--FS--NVDAVFCCLPHGTTQEIIKG-LPKSL-KIVDLSADFRLRDVSEYEEWYGQPHIAPDL 183 (406)
Q Consensus 119 --------~-~~~~~~~--~~--~vDvVF~al~~~~s~~~~~~-l~~G~-~VIDlSa~fRl~~~~~~~~~y~~~~~~Pev 183 (406)
+ ...++.+ |. ++|+|+.|+|...+++.++. +++|+ +|| +|++. ++ +.
T Consensus 80 ~~g~~i~~~~~~~~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkVi-iSAP~--~~--------~~------- 141 (190)
T d1k3ta1 80 VNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVV-ISAPA--SG--------GA------- 141 (190)
T ss_dssp ETTEEEEEEECCSCGGGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEE-ESSCC--BS--------SC-------
T ss_pred EcCceEEecccCCChhHCCHhhcCCcEEEEecccccccccchhhcccCcceee-eccCC--cc--------cC-------
Confidence 0 1112233 43 89999999999999887765 57775 676 67764 22 11
Q ss_pred hhhhhccccccchhhcc--CCcEEecCCChHHHHHHHHHHHHHccCCCcc
Q 015441 184 QKEAVYGLTEISREDIK--NARLVANPGCYPTSIQLPLVPLIQANLIQYR 231 (406)
Q Consensus 184 n~~~vyglpE~~~~~i~--~~~iVanPgC~tta~~l~L~PL~~~~l~~i~ 231 (406)
+..+|| +|++++. +++|||+.+|+|+++++.++.|+.. |+++
T Consensus 142 -~tiV~G---VN~~~y~~~~~~IIS~ASCTtn~lapv~kvi~~~--f~~~ 185 (190)
T d1k3ta1 142 -KTLVMG---VNHHEYNPSEHHVVSNADNEWGYSHRVVDLVRHM--ASKD 185 (190)
T ss_dssp -EECCTT---TTGGGCCTTTCSEEECCCTTHHHHHHHHHHHHHH--HHHH
T ss_pred -CeEEec---cCHhhcCCccCcEEEchhHhhhHHHHHHHHHHHH--hccc
Confidence 245788 7888886 4689999999999999999999876 5554
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=99.49 E-value=3e-14 Score=125.97 Aligned_cols=139 Identities=14% Similarity=0.231 Sum_probs=100.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC-----ccccccccCccc-------------cCCCcccccCcc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG-----QSIGSVFPHLIS-------------QDLPTMVAVKDA 125 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G-----~~i~~v~p~l~~-------------~~~~~~~~~~~~ 125 (406)
|||||+| .|++||.++|+|.+ +.++++++.+..+.. .+++++|+.|.. +.+......++.
T Consensus 1 ikigING-fGRIGR~~~R~l~~-~~i~iv~INd~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~p~ 78 (168)
T d2g82a1 1 MKVGING-FGRIGRQVFRILHS-RGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPK 78 (168)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHH-HTCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGG
T ss_pred CEEEEEC-CcHHHHHHHHHHhc-CCCEEEEECCCcchhhhhheeecccccCccccccccccceeEecceeEEEEecCChH
Confidence 6899999 99999999998875 468999999754322 257777776642 222222222222
Q ss_pred --cC--CCCCEEEEcCCCcchHHHHhh-CCCCC-EEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhhc
Q 015441 126 --DF--SNVDAVFCCLPHGTTQEIIKG-LPKSL-KIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISREDI 199 (406)
Q Consensus 126 --~~--~~vDvVF~al~~~~s~~~~~~-l~~G~-~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~i 199 (406)
.| .++|+|+.|+|...+++.++. +.+|+ +|| +|++. +++ ....+|| +|++++
T Consensus 79 ~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkVi-iSAP~--kd~----------------~~~iV~G---vN~~~y 136 (168)
T d2g82a1 79 EIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVI-ITAPA--KGE----------------DITIVMG---VNHEAY 136 (168)
T ss_dssp GCCTGGGTEEEEEECSSSCCBHHHHTHHHHTTCSEEE-ESSCC--BSC----------------SEECCTT---TTGGGC
T ss_pred HCcccccCCceeEeccccccchHHhhhhhccccceee-ecccc--ccc----------------cceeEee---ccHHHc
Confidence 35 378999999999999887765 56664 677 67763 221 1245788 788888
Q ss_pred c--CCcEEecCCCh---HHHHHHHHHHHHHcc
Q 015441 200 K--NARLVANPGCY---PTSIQLPLVPLIQAN 226 (406)
Q Consensus 200 ~--~~~iVanPgC~---tta~~l~L~PL~~~~ 226 (406)
. ++++|||.+|+ |+++++.|+.|+++|
T Consensus 137 ~~~~~~IIS~ASCT~~~tN~laPv~k~i~~k~ 168 (168)
T d2g82a1 137 DPSRHHIISNASNEWGYANRVADLVELVLRKG 168 (168)
T ss_dssp CTTTCCEEECCCTTHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCcEEEeccccCccHHHHHHHHHHHhhcC
Confidence 6 35899999999 899999999998864
|
| >d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=99.46 E-value=1.8e-13 Score=121.27 Aligned_cols=139 Identities=11% Similarity=0.124 Sum_probs=96.4
Q ss_pred cEEEEECcccHHHHHHHHHHHc--CCCceEEEEeccCcCC-----ccccccccCccc--------------cCCCccccc
Q 015441 64 VRIGLLGASGYTGAEIVRLLAN--HPYFGIKLMTADRKAG-----QSIGSVFPHLIS--------------QDLPTMVAV 122 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~--hp~~elv~l~s~~~~G-----~~i~~v~p~l~~--------------~~~~~~~~~ 122 (406)
|||||+| .|++||.++|++.+ ++.++++++.+..+.. .+++++|+.+.. +.+......
T Consensus 1 ikIgING-fGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~ayLlkyDSvhG~~~~~i~~~~~~~~~ing~~I~~~~~~ 79 (172)
T d1rm4a1 1 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDR 79 (172)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHHCSSCSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECCS
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEEcCCCCHHHHHHHHhcCcccccccceeEecCCcceEECCEEEEEecCC
Confidence 6999999 99999999998774 5569999998754321 256777776541 122212222
Q ss_pred Ccc--cCC--CCCEEEEcCCCcchHHHHhh-CCCCC-EEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccch
Q 015441 123 KDA--DFS--NVDAVFCCLPHGTTQEIIKG-LPKSL-KIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISR 196 (406)
Q Consensus 123 ~~~--~~~--~vDvVF~al~~~~s~~~~~~-l~~G~-~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~ 196 (406)
++. .|. ++|+|+.|+|...+++-+.. +++|+ +|| +|++. ++ +.+ ..+|| +|+
T Consensus 80 ~p~~i~W~~~gvDiViEcTG~f~~~~~~~~hl~~GakkVi-iSAP~--k~--------~~~--------tiV~G---VN~ 137 (172)
T d1rm4a1 80 NPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVL-ITAPG--KG--------DIP--------TYVVG---VNE 137 (172)
T ss_dssp CGGGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSCEE-ESSCC--BS--------SCC--------BCCTT---TTG
T ss_pred ChHHCChhhcCCCEEEecCceEccHHHHHHHHhcCCceEE-eeccc--cc--------cee--------eEEee---cch
Confidence 233 353 79999999999999887765 67775 677 67764 22 122 45788 788
Q ss_pred hhcc-CCcEEecCCChHHH---HHHHHHHHHHc
Q 015441 197 EDIK-NARLVANPGCYPTS---IQLPLVPLIQA 225 (406)
Q Consensus 197 ~~i~-~~~iVanPgC~tta---~~l~L~PL~~~ 225 (406)
+.+. +.++|||.+|+|++ ++..|+-|++.
T Consensus 138 ~~~~~~~~iIS~aSCTtn~~~~l~pv~~vi~~~ 170 (172)
T d1rm4a1 138 EGYTHADTIISNASNEWGYSQRVVDLADIVANK 170 (172)
T ss_dssp GGCCTTCSEEECCCTTHHHHHHHHHHHHHHHHT
T ss_pred hhcCCCCCEEEcccchhccHhHhHHHHHHHHhh
Confidence 8875 46899999999555 66666776665
|
| >d1u8fo2 d.81.1.1 (O:152-315) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Human(Homo sapiens), liver isoform [TaxId: 9606]
Probab=99.42 E-value=1.9e-13 Score=119.43 Aligned_cols=116 Identities=8% Similarity=0.100 Sum_probs=97.9
Q ss_pred ChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccH------HHHhcCcccccCCcc----cchhhhhhhh
Q 015441 210 CYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLY------SEIAEGIYSYGVTRH----RHVPEIEQGL 279 (406)
Q Consensus 210 C~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~------~e~~~ni~py~~~~h----~h~pEi~~~l 279 (406)
|+|+|+++.++.|+++ |+|++..++|+|++++. |...|..|. +....||+|...++- +.+||+++
T Consensus 1 CTTNclaP~~kvl~~~--fgI~~g~mTTiHayT~~-Q~l~D~~~~~~~Rr~Raa~~niIPttTgAakAv~~vlP~L~g-- 75 (164)
T d1u8fo2 1 CTTNCLAPLAKVIHDN--FGIVEGLMTTVHAITAT-QKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNG-- 75 (164)
T ss_dssp HHHHHHHHHHHHHHHH--HCEEEEEEEEEEECCTT-SBSSSCCCTTCGGGGSBTTTCCEEEECCTTTTHHHHSGGGTT--
T ss_pred ChhHHHHHHHHHHHhh--cCeeEEEEEeeecccCc-cccccccccCccccCCCCcCcceeccccHHHHHHHhChhhcC--
Confidence 9999999999999998 79999999999999999 677886442 345579999988764 35788866
Q ss_pred ccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCC--CcEEecCC
Q 015441 280 TGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHE--EFVKLLEK 338 (406)
Q Consensus 280 ~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~--~fV~v~~~ 338 (406)
++...++|||+..|.+.+++++++++++.|||+++|+++.++. ..+.+.++
T Consensus 76 --------kl~g~a~RVPt~~vS~vDlt~~l~k~~t~eevn~~l~~aa~~~lk~Il~~~~e 128 (164)
T d1u8fo2 76 --------KLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEH 128 (164)
T ss_dssp --------SEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECS
T ss_pred --------CccceEEecCCCCcceeeEEEEEcCcCCHHHHHHHHHHHhcCCccCccccccc
Confidence 6899999999999999999999999999999999999976442 45566544
|
| >d2g82a2 d.81.1.1 (A:149-310) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=99.41 E-value=3e-13 Score=118.35 Aligned_cols=116 Identities=16% Similarity=0.135 Sum_probs=98.7
Q ss_pred ChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccH-----HHHhcCcccccCCcc----cchhhhhhhhc
Q 015441 210 CYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLY-----SEIAEGIYSYGVTRH----RHVPEIEQGLT 280 (406)
Q Consensus 210 C~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~-----~e~~~ni~py~~~~h----~h~pEi~~~l~ 280 (406)
|+|+|+++.++.|+++ |+|++..++|+|++++. |+..|..|. +...+||+|...++. +.+||+++
T Consensus 1 CTTNclaP~~kil~~~--fgI~~g~~tTiH~~t~~-Q~l~D~~~~d~rr~Rsa~~niIPt~Tgaakai~~vlP~L~g--- 74 (162)
T d2g82a2 1 CTTNSLAPVMKVLEEA--FGVEKALMTTVHSYTND-QRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKG--- 74 (162)
T ss_dssp HHHHHHHHHHHHHHHH--TCEEEEEEEEEEECCTT-SBSSSCCCSSTTTTSBGGGCCEEECCCHHHHHHHHCGGGTT---
T ss_pred ChhHhHHHHHHHHHhh--cCeeEEEEEeeccccCc-cccCCCCCCCccccchhhcccCcccCccchhhchhhHhhCC---
Confidence 9999999999999998 79999999999999999 777887653 356689999988864 45788866
Q ss_pred cccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCC--CcEEecCC
Q 015441 281 GFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHE--EFVKLLEK 338 (406)
Q Consensus 281 ~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~--~fV~v~~~ 338 (406)
++.+.++|||+..+.+.+++++++++++.|||+++|+++.++. ..+.+.++
T Consensus 75 -------ki~g~a~RVPt~nvS~vDl~~~l~k~~s~eeIn~~lk~aa~~~~~~il~~~~e 127 (162)
T d2g82a2 75 -------RFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTED 127 (162)
T ss_dssp -------SEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECS
T ss_pred -------CceeEEEeecccccceEEEEEEecCcCCHHHHHHHHHHHccCCCcCeeeEecc
Confidence 6899999999999999999999999999999999999886543 35666543
|
| >d1obfo2 d.81.1.1 (O:153-314) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Achromobacter xylosoxidans [TaxId: 85698]
Probab=99.40 E-value=3.1e-13 Score=118.43 Aligned_cols=117 Identities=11% Similarity=0.127 Sum_probs=98.6
Q ss_pred CChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccH-----HHHhcCcccccCCcc----cchhhhhhhh
Q 015441 209 GCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLY-----SEIAEGIYSYGVTRH----RHVPEIEQGL 279 (406)
Q Consensus 209 gC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~-----~e~~~ni~py~~~~h----~h~pEi~~~l 279 (406)
+|+|+|+++.++.|+++ |+|+...++|+|++++. |...|..+. +....||+|...++- +.+||+++
T Consensus 1 SCTTN~laP~~kvl~~~--fgI~~g~mtTvHa~t~~-Q~l~D~~~~d~r~~Raa~~niIP~sTgAakav~~viP~L~g-- 75 (162)
T d1obfo2 1 SCTTNCLAPLVKPLNDK--LGLQDGLMTTVHAYTNN-QVLTDVYHEDLRRARSATMSMIPTKTGAAAAVGDVLPELDG-- 75 (162)
T ss_dssp CHHHHHHHHHHHHHHHH--TCEEEEEEEEEEECCTT-SCSSCCCCSSTTTTSCTTTCCEEEECCHHHHHHHHCGGGTT--
T ss_pred CcHHHHHHHHHHHHHhh--cCeeEEEEEEeeccccc-ccccccccccccccccccceeeeecCCchhhHhHhChhhCC--
Confidence 69999999999999998 79999999999999988 667776542 345689999887753 45788876
Q ss_pred ccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCC--CcEEecCC
Q 015441 280 TGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHE--EFVKLLEK 338 (406)
Q Consensus 280 ~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~--~fV~v~~~ 338 (406)
++.+.++|||+..+.+.+++++++++++.|||+++|+++.++. ..+.+.++
T Consensus 76 --------ki~g~a~RVPt~~vS~vDLt~~l~k~~t~eein~~l~~aa~~~~~~il~~t~e 128 (162)
T d1obfo2 76 --------KLNGYAIRVPTINVSIVDLSFVAKRNTTVEEVNGILKAASEGELKGILDYNTE 128 (162)
T ss_dssp --------SEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECS
T ss_pred --------CCCceEEeccccCcceeeEEEEecCCCCHHHHHHHHHHHhhCcccCcccccCC
Confidence 5899999999999999999999999999999999999875443 46666554
|
| >d1k3ta2 d.81.1.1 (A:165-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.38 E-value=5.9e-13 Score=117.39 Aligned_cols=117 Identities=9% Similarity=0.079 Sum_probs=96.9
Q ss_pred CChHHHHHHHHHHH-HHccCCCcceEEEEEeeccCccCcchhhccc------HHHHhcCcccccCCcc----cchhhhhh
Q 015441 209 GCYPTSIQLPLVPL-IQANLIQYRNIIIDAKSGVSGAGRGAKEANL------YSEIAEGIYSYGVTRH----RHVPEIEQ 277 (406)
Q Consensus 209 gC~tta~~l~L~PL-~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~------~~e~~~ni~py~~~~h----~h~pEi~~ 277 (406)
+|+|+++++.++.| +++ |+|++..++|+|++++. |+..|..+ .+....||+|...++. +.+||+++
T Consensus 1 SCTTNclaP~~kvL~~~~--fgI~~g~mtTvHa~T~~-Q~~lD~~~~~d~Rr~Raa~~nIIPtsTgAakav~~vlP~L~g 77 (169)
T d1k3ta2 1 SCTTNCLAPIVHVLVKEG--FGVQTGLMTTIHSYTAT-QKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTQG 77 (169)
T ss_dssp CHHHHHHHHHHHHHHHTT--CCCSEEEEEEEEECCTT-SBSSSCCCSSCTGGGSBGGGCCEEEECSHHHHHHHHSGGGTT
T ss_pred CcHHHHHHHHHHHhhccc--cceeEEEEEEeccccCC-CcccccccCCCCcCccccccccccccchHHHHHHHhccccCC
Confidence 69999999999998 555 79999999999999999 55677533 1356689999988764 45788866
Q ss_pred hhccccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCC--CCcEEecCC
Q 015441 278 GLTGFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEH--EEFVKLLEK 338 (406)
Q Consensus 278 ~l~~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~--~~fV~v~~~ 338 (406)
++...++|||+..|.+.+++++++++++.|||+++++++.++ ...+.+.++
T Consensus 78 ----------Ki~g~a~RVPt~nvS~vDLt~~l~k~~t~eein~~~~~as~~~~kgil~~t~e 130 (169)
T d1k3ta2 78 ----------KLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTYMKGILGYTDE 130 (169)
T ss_dssp ----------TEEEEEEEESCSSCEEEEEEEECSSCCCHHHHHHHHHHHHHTTTTTTEEEECS
T ss_pred ----------CccceeecccccccceeeeeeeccccchhhHHHHHHHHHhhCCCCCceeEecC
Confidence 689999999999999999999999999999999999997554 235666544
|
| >d1rm4a2 d.81.1.1 (A:149-312) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=99.38 E-value=3.5e-13 Score=118.02 Aligned_cols=116 Identities=10% Similarity=0.101 Sum_probs=98.5
Q ss_pred ChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccH-----HHHhcCcccccCCcc----cchhhhhhhhc
Q 015441 210 CYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLY-----SEIAEGIYSYGVTRH----RHVPEIEQGLT 280 (406)
Q Consensus 210 C~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~-----~e~~~ni~py~~~~h----~h~pEi~~~l~ 280 (406)
|+|+|+++.++.|+++ |+|++..++|+|++++. |...|..|. +....||+|...++. +.+||+++
T Consensus 1 CTTN~laP~~kvl~~~--fgI~~g~mtTvHa~T~~-Q~l~D~~~~d~rr~Raa~~niIPt~Tga~kai~~vlP~L~g--- 74 (163)
T d1rm4a2 1 CTTNCLAPFVKVLDQK--FGIIKGTMTTTHSYTGD-QRLLDASHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKG--- 74 (163)
T ss_dssp HHHHHHHHHHHHHHHH--HCEEEEEEEEEEECCTT-SCSSSCCCSSTTTTSCTTTCCEEECCCHHHHHHHHCGGGTT---
T ss_pred ChhHhHHHHHHHHHHh--CCeeEEEEEEeccccCC-cCcccCCCCcccccchhhcccCcCcccHHHHHHHhChhhcC---
Confidence 9999999999999998 79999999999999999 777887653 355689999988764 45788876
Q ss_pred cccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCC--CcEEecCC
Q 015441 281 GFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHE--EFVKLLEK 338 (406)
Q Consensus 281 ~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~--~fV~v~~~ 338 (406)
++.+.++|||+..|.+.+++++++++++.|||+++|+++.++. ..+.+.++
T Consensus 75 -------ki~g~a~RVPt~nvS~vDl~~~l~k~~t~eein~~~~~as~~~~~~il~~~~e 127 (163)
T d1rm4a2 75 -------KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDE 127 (163)
T ss_dssp -------TEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHTTTTTTTEEEECS
T ss_pred -------CcceEEEecCCCCceeEEEEEeccCCCCHHHHHHHHHHHhhCcccCccccccC
Confidence 6899999999999999999999999999999999999986543 24555543
|
| >d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.36 E-value=1.3e-12 Score=115.08 Aligned_cols=136 Identities=18% Similarity=0.195 Sum_probs=96.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccC-cCC-----ccccccccCccc-------------cCCCcccccCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR-KAG-----QSIGSVFPHLIS-------------QDLPTMVAVKD 124 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~-~~G-----~~i~~v~p~l~~-------------~~~~~~~~~~~ 124 (406)
.||||+| .|++||.++|++.++|+++++++++.. +.. .+++++|+.|.. +.+.....-++
T Consensus 1 tkigING-fGRIGR~v~R~~~~~~~~~iv~INd~~~d~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~i~~~~~p 79 (166)
T d2b4ro1 1 TKLGING-FGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKDP 79 (166)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHTCSSEEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEECCSSG
T ss_pred CeEEEEC-CCHHHHHHHHHHhhCCCcEEEEECCCCCChHHhhhhhhcccccccceeeeccCCceEEecCcEEEEEeCCCh
Confidence 3899999 999999999999999999999999743 221 357777776642 22222222223
Q ss_pred c--cCC--CCCEEEEcCCCcchHHHHhh-CCCCC-EEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhh
Q 015441 125 A--DFS--NVDAVFCCLPHGTTQEIIKG-LPKSL-KIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISRED 198 (406)
Q Consensus 125 ~--~~~--~vDvVF~al~~~~s~~~~~~-l~~G~-~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~ 198 (406)
. .|. ++|+|+.|+|...+++.++. +++|+ +|| +|++. ++ +.+ ..+|| +|+++
T Consensus 80 ~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkVi-iSAP~--kd--------~~~--------tiV~G---VN~~~ 137 (166)
T d2b4ro1 80 SQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVI-MSAPP--KD--------DTP--------IYVMG---INHHQ 137 (166)
T ss_dssp GGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEE-ESSCC--SS--------SCC--------BCCTT---TTGGG
T ss_pred HHccccccCCCEEEEecccccchhhhhhhhccCCCEEE-Eeccc--cc--------ccc--------eeeee---cchhh
Confidence 3 353 89999999999999887764 57775 677 67764 22 122 45788 78888
Q ss_pred ccC-CcEEecCCChHHHHHHHHHHHHHc
Q 015441 199 IKN-ARLVANPGCYPTSIQLPLVPLIQA 225 (406)
Q Consensus 199 i~~-~~iVanPgC~tta~~l~L~PL~~~ 225 (406)
+.. .++|||.+|+ +++.++.|++.
T Consensus 138 ~~~~~~IIS~AS~~---~ap~~kvl~~~ 162 (166)
T d2b4ro1 138 YDTKQLIVSNASNE---WGYSNRVLDLA 162 (166)
T ss_dssp CCTTCCEEECCCTT---HHHHHHHHHHH
T ss_pred cCCCCCEEEChhHH---HHHHHHHHHHH
Confidence 864 6899999995 45666667665
|
| >d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=99.36 E-value=1.7e-12 Score=114.42 Aligned_cols=135 Identities=14% Similarity=0.178 Sum_probs=95.1
Q ss_pred EEEEECcccHHHHHHHHHHHc--CCCceEEEEeccCcCC-----ccccccccCccc-------------cCCCcccccCc
Q 015441 65 RIGLLGASGYTGAEIVRLLAN--HPYFGIKLMTADRKAG-----QSIGSVFPHLIS-------------QDLPTMVAVKD 124 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~--hp~~elv~l~s~~~~G-----~~i~~v~p~l~~-------------~~~~~~~~~~~ 124 (406)
||||+| .|++||.++|.+.+ +|+++++++.+..+.. .+++++|+.|.. +.+..+...++
T Consensus 2 kIgING-fGRIGR~v~R~~~~~~~~~i~vvaINd~~~~e~~ayLlkyDS~hG~~~~~v~~~~~~l~ing~~I~~~~~~~p 80 (169)
T d1hdgo1 2 RVAING-FGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPDP 80 (169)
T ss_dssp EEEEEC-CSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred EEEEEC-CChHHHHHHHHHHhccCCCEEEEEeccCccHHHHHHHHhccccccccCceEEEECCEEEECCEEEEEEeCCCh
Confidence 899999 99999999998874 7889999998754322 256777776642 22222222222
Q ss_pred c--cCC--CCCEEEEcCCCcchHHHHhh-CCCCC-EEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccchhh
Q 015441 125 A--DFS--NVDAVFCCLPHGTTQEIIKG-LPKSL-KIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEISRED 198 (406)
Q Consensus 125 ~--~~~--~vDvVF~al~~~~s~~~~~~-l~~G~-~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~~~~ 198 (406)
. .|. ++|+|+.|+|...+++-++. +++|+ +|| +|++. +++ . ...+|| +|+++
T Consensus 81 ~~i~W~~~gvD~ViEcTG~f~t~~~~~~hl~~GakkVi-iSAP~--kd~--------~--------~tiV~G---vN~~~ 138 (169)
T d1hdgo1 81 SKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVI-ITAPA--KGE--------D--------ITVVIG---CNEDQ 138 (169)
T ss_dssp GGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEE-ESSCC--BSC--------S--------EECCTT---TTGGG
T ss_pred hhCCccccCCCEEEEecceeccccchhhhccCCCceEE-Eeccc--CCC--------c--------ceeEEe---cchhh
Confidence 2 353 79999999999999887765 56775 677 67763 221 1 245788 78888
Q ss_pred ccC-CcEEecCCChHHHHHHHHHHH
Q 015441 199 IKN-ARLVANPGCYPTSIQLPLVPL 222 (406)
Q Consensus 199 i~~-~~iVanPgC~tta~~l~L~PL 222 (406)
+.. .++||+.+|++.+++..+..|
T Consensus 139 ~~~~~~iiS~aScttn~~a~v~~vi 163 (169)
T d1hdgo1 139 LKPEHTIISCASNEYGYSNRVVDTL 163 (169)
T ss_dssp CCTTCCEEECCCTTHHHHHHHHHHH
T ss_pred cCCcCcEEEchhHhhhHHHHHHHHH
Confidence 864 589999999988888666444
|
| >d3cmco2 d.81.1.1 (O:149-312) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]
Probab=99.35 E-value=5e-13 Score=116.82 Aligned_cols=116 Identities=15% Similarity=0.126 Sum_probs=98.0
Q ss_pred ChHHHHHHHHHHHHHccCCCcceEEEEEeeccCccCcchhhcccH-----HHHhcCcccccCCcc----cchhhhhhhhc
Q 015441 210 CYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSGAGRGAKEANLY-----SEIAEGIYSYGVTRH----RHVPEIEQGLT 280 (406)
Q Consensus 210 C~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSGaG~~~~~~~~~-----~e~~~ni~py~~~~h----~h~pEi~~~l~ 280 (406)
|+|+|+++.++.|+++ |+|++..++|+|++++. |+..|..|. +....||+|...++- +.+||+++
T Consensus 1 CTTNclaP~~kvl~~~--fgI~~g~mTTvHa~T~~-Q~l~D~~~~d~Rr~Raa~~niIPtsTgAakav~~vlP~L~g--- 74 (163)
T d3cmco2 1 CTTNCLAPFAKVLHEQ--FGIVRGMMTTVHSYTND-QRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKG--- 74 (163)
T ss_dssp HHHHHHHHHHHHHHHH--HCEEEEEEEEEEECCTT-SBSSSCCCSSTTTTSBTTTCCEEEECSHHHHHHHHCGGGTT---
T ss_pred ChhHHHHHHHHHHHhh--cCeeEEEEEeeccccCc-ccCCCCCCcchhccchHhhCCCCccccHHHHHHHhhHHhCC---
Confidence 9999999999999998 79999999999999999 777887652 355679999988763 45788866
Q ss_pred cccCCCceEEEEEEEeeecceeEEEEEEEeCCCCCHHHHHHHHHHHcCCC--CcEEecCC
Q 015441 281 GFASSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVTIEDLYQQLKISYEHE--EFVKLLEK 338 (406)
Q Consensus 281 ~i~~~~~~v~~t~~rVPv~rG~~~ti~v~l~~~~s~eev~~~l~~~y~~~--~fV~v~~~ 338 (406)
++...++|||+..|.+.+++++++++++.|+|+++|+++.++. ..+.+.++
T Consensus 75 -------kl~g~a~RVPt~~vS~vDlt~~l~k~~t~e~in~~~k~as~~~lkgil~~t~~ 127 (163)
T d3cmco2 75 -------KLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEE 127 (163)
T ss_dssp -------TEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECS
T ss_pred -------CcceEEEecCCCcceeEEEEEEecCcCCHHHHHHHHHHHhcCCccCcceeeec
Confidence 5899999999999999999999999999999999999986543 24556544
|
| >d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Achromobacter xylosoxidans [TaxId: 85698]
Probab=99.20 E-value=1.2e-12 Score=115.97 Aligned_cols=143 Identities=17% Similarity=0.256 Sum_probs=97.3
Q ss_pred ccEEEEECcccHHHHHHHHHHHc---CCCceEEEEeccCcCC-----ccccccccCccc-------------cCCCcccc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLAN---HPYFGIKLMTADRKAG-----QSIGSVFPHLIS-------------QDLPTMVA 121 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~---hp~~elv~l~s~~~~G-----~~i~~v~p~l~~-------------~~~~~~~~ 121 (406)
++||||+| .|++||.++|++.+ ++.++++++.+..+.. .+++++|..|.. +.+..+..
T Consensus 1 tikigING-fGRIGR~v~R~~~~~~~~~~~~vvaINd~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~ 79 (173)
T d1obfo1 1 TIRVAING-YGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDAN 79 (173)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECC
T ss_pred CeEEEEEC-CcHHHHHHHHHHHhCCCCCCeEEEEEcCCCChHHHHHhhcccccCCCcCceEEeccceEEECCEEEEEEec
Confidence 47999999 99999999998763 6889999999754322 256777766542 22222222
Q ss_pred cCcc--cC--CCCCEEEEcCCCcchHHHHhh-CCCCC-EEEEcCCcccCCCccchhhhcCCCCCCccchhhhhccccccc
Q 015441 122 VKDA--DF--SNVDAVFCCLPHGTTQEIIKG-LPKSL-KIVDLSADFRLRDVSEYEEWYGQPHIAPDLQKEAVYGLTEIS 195 (406)
Q Consensus 122 ~~~~--~~--~~vDvVF~al~~~~s~~~~~~-l~~G~-~VIDlSa~fRl~~~~~~~~~y~~~~~~Pevn~~~vyglpE~~ 195 (406)
.++. .| .++|+|+.|+|...+++-+.. +++|+ +|| +|++. +++ . .+..+|| +|
T Consensus 80 ~~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkVi-iSAP~--~~~--------~-------d~tiV~G---VN 138 (173)
T d1obfo1 80 RNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVI-ISAPG--GAD--------V-------DATVVYG---VN 138 (173)
T ss_dssp SCGGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEE-ESSCC--CTT--------S-------SEECCTT---TS
T ss_pred CCHHHCcccccccceEEEecccccCHHHHHHHhccCCcceE-EecCC--CCC--------C-------cceEEEe---cc
Confidence 2222 35 379999999999999887754 66664 677 77764 221 1 1245788 78
Q ss_pred hhhccC-CcEEecCCChHHHHHHHHHHHHHccCCCcceEEEEEeeccCc
Q 015441 196 REDIKN-ARLVANPGCYPTSIQLPLVPLIQANLIQYRNIIIDAKSGVSG 243 (406)
Q Consensus 196 ~~~i~~-~~iVanPgC~tta~~l~L~PL~~~~l~~i~~i~v~t~~gvSG 243 (406)
++++.. .++|||.+ +. |+|++..++|.|+++-
T Consensus 139 ~~~~~~~~~IISnAs--------------~~--fgI~~g~mtTih~~ts 171 (173)
T d1obfo1 139 HGTLKSTDTVISNAD--------------NE--WGFSNRMLDTTVALMS 171 (173)
T ss_dssp GGGCCTTCCEEECCC--------------TT--HHHHHHHHHHHHHHHH
T ss_pred hhhcCCCCCEEECCc--------------cc--cCceeeEEEeeheeee
Confidence 888864 68999885 33 5666666777777653
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=98.38 E-value=5.8e-07 Score=77.94 Aligned_cols=84 Identities=20% Similarity=0.336 Sum_probs=60.9
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
++||+|+| +|.+|+.+++.|.++|++|++++.+++..-.... ......+. .....++|+|+.|+|+..=
T Consensus 3 kirvgiiG-~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~~---------~~~~~~~~-~~~~~~~D~Vvi~tp~~~h 71 (170)
T d1f06a1 3 NIRVAIVG-YGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKT---------PVFDVADV-DKHADDVDVLFLCMGSATD 71 (170)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSSS---------CEEEGGGG-GGTTTTCSEEEECSCTTTH
T ss_pred cceEEEEC-ChHHHHHHHHHHHhCCCcEEEEEEeccccccccc---------ccccchhh-hhhccccceEEEeCCCccc
Confidence 48999999 8999999999999999999999998654211111 00001111 1123579999999999877
Q ss_pred HHHHhh-CCCCCEEEE
Q 015441 143 QEIIKG-LPKSLKIVD 157 (406)
Q Consensus 143 ~~~~~~-l~~G~~VID 157 (406)
.+++.+ +++|+.||+
T Consensus 72 ~~~a~~aL~aG~~vv~ 87 (170)
T d1f06a1 72 IPEQAPKFAQFACTVD 87 (170)
T ss_dssp HHHHHHHHTTTSEEEC
T ss_pred HHHHHHHHHCCCcEEE
Confidence 777765 699999884
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=98.08 E-value=2.4e-06 Score=73.90 Aligned_cols=94 Identities=13% Similarity=0.137 Sum_probs=64.8
Q ss_pred CCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc---CCccccccccCccccCCCcccccCcccCCCCCEEEEcC
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK---AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCL 137 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~---~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al 137 (406)
+.++||+|+||+|..|+++++++.+.+++++++..++.. .|+.+.++.+.- ....+....+ +..+..+|+++..+
T Consensus 2 ~s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~-~~~~~~~~~~-~~~~~~~DViIDFs 79 (162)
T d1diha1 2 DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAG-KTGVTVQSSL-DAVKDDFDVFIDFT 79 (162)
T ss_dssp CCBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSS-CCSCCEESCS-TTTTTSCSEEEECS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccc-cCCceeeccH-HHHhcccceEEEec
Confidence 346899999999999999999999999999988876542 344444332211 1112111111 22346899999999
Q ss_pred CCcchHHHHhhC-CCCCEEE
Q 015441 138 PHGTTQEIIKGL-PKSLKIV 156 (406)
Q Consensus 138 ~~~~s~~~~~~l-~~G~~VI 156 (406)
.++.+.+.++.+ +.|+.+|
T Consensus 80 ~p~~~~~~~~~a~~~~~~~V 99 (162)
T d1diha1 80 RPEGTLNHLAFCRQHGKGMV 99 (162)
T ss_dssp CHHHHHHHHHHHHHTTCEEE
T ss_pred cHHHHHHHHHHHHhccceeE
Confidence 999888888865 6777655
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.68 E-value=4e-05 Score=68.65 Aligned_cols=74 Identities=24% Similarity=0.416 Sum_probs=43.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccCcCCccccccccCccc--cCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRKAGQSIGSVFPHLIS--QDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~~~G~~i~~v~p~l~~--~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
.+|.|.||||++|+.|++.|.+++.+ ++.+++ |+....... ....+.. .|+.....+ ...+.++|+||.|++..
T Consensus 15 k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~-R~~~~~~~~-~~~~i~~~~~D~~~~~~~-~~~~~~~d~vi~~~~~~ 91 (232)
T d2bkaa1 15 KSVFILGASGETGRVLLKEILEQGLFSKVTLIG-RRKLTFDEE-AYKNVNQEVVDFEKLDDY-ASAFQGHDVGFCCLGTT 91 (232)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEE-SSCCCCCSG-GGGGCEEEECCGGGGGGG-GGGGSSCSEEEECCCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEe-cChhhhccc-ccceeeeeeecccccccc-ccccccccccccccccc
Confidence 57999999999999999999877665 666665 332211111 0111110 122111122 22357899999998753
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=97.65 E-value=2.7e-05 Score=66.27 Aligned_cols=86 Identities=17% Similarity=0.266 Sum_probs=58.5
Q ss_pred ccEEEEECcccHHHHH-HHHHHHcCCCceEEEEeccCcCC-ccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 63 QVRIGLLGASGYTGAE-IVRLLANHPYFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 63 ~ikVaIvGATG~vG~e-LlrlL~~hp~~elv~l~s~~~~G-~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
++||||+| +|.+|+. .++.|..+|+++++++.++...- +.+..- +. .+..... ++...++|+|+.|+|+.
T Consensus 1 Kiri~iIG-~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~---~~---~~~~~~~-~~l~~~~D~V~I~tp~~ 72 (164)
T d1tlta1 1 KLRIGVVG-LGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICES---WR---IPYADSL-SSLAASCDAVFVHSSTA 72 (164)
T ss_dssp CEEEEEEC-CSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHH---HT---CCBCSSH-HHHHTTCSEEEECSCTT
T ss_pred CCEEEEEc-CCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhc---cc---ccccccc-hhhhhhcccccccccch
Confidence 47999999 7999986 68889999999999999865421 111111 11 1111111 11125789999999998
Q ss_pred chHHHHhh-CCCCCEEE
Q 015441 141 TTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 141 ~s~~~~~~-l~~G~~VI 156 (406)
.-.+++.. +++|+.|+
T Consensus 73 ~h~~~~~~al~~gk~V~ 89 (164)
T d1tlta1 73 SHFDVVSTLLNAGVHVC 89 (164)
T ss_dssp HHHHHHHHHHHTTCEEE
T ss_pred hccccccccccccceee
Confidence 88887765 58888776
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.61 E-value=3.2e-05 Score=67.82 Aligned_cols=32 Identities=19% Similarity=0.421 Sum_probs=27.1
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|.||+|+||||++|+.+++.|+... .+++++.
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~g-~~V~~~~ 34 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQAG-YEVTVLV 34 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCc-CEEEEEE
Confidence 4689999999999999999887653 5788876
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.53 E-value=6.9e-05 Score=65.61 Aligned_cols=70 Identities=23% Similarity=0.404 Sum_probs=41.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
.||.|.||||++|++|++.|+++++. ++..+ +++... .++.+.. ...++.+........+|.||.|++..
T Consensus 3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~-~r~~~~-----~~~~~~~-~~~d~~~~~~~~~~~~d~vi~~~g~~ 73 (212)
T d2a35a1 3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAP-ARKALA-----EHPRLDN-PVGPLAELLPQLDGSIDTAFCCLGTT 73 (212)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHCTTCCEEECC-BSSCCC-----CCTTEEC-CBSCHHHHGGGCCSCCSEEEECCCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEE-eCCchh-----hcccccc-cccchhhhhhccccchheeeeeeeee
Confidence 58999999999999999999887775 44443 333211 1111211 11111111122234679999987644
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.49 E-value=9.3e-05 Score=61.70 Aligned_cols=71 Identities=21% Similarity=0.280 Sum_probs=55.1
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchHH
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQE 144 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~~ 144 (406)
||+|+||+|..|+++++++.+.+++++++..++.+ .+. .. ...++|+|+..+.+..+.+
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~---~~~------------~~------~~~~~DvvIDFS~p~~~~~ 59 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD---PLS------------LL------TDGNTEVVIDFTHPDVVMG 59 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC---CTH------------HH------HTTTCSEEEECCCTTTHHH
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC---chh------------hh------ccccCCEEEEcccHHHHHH
Confidence 79999999999999999999999999988775321 111 00 1146899999999999989
Q ss_pred HHhhC-CCCCEEE
Q 015441 145 IIKGL-PKSLKIV 156 (406)
Q Consensus 145 ~~~~l-~~G~~VI 156 (406)
.++.+ +.|+.+|
T Consensus 60 ~~~~~~~~~~~~V 72 (135)
T d1yl7a1 60 NLEFLIDNGIHAV 72 (135)
T ss_dssp HHHHHHHTTCEEE
T ss_pred HHHHHHhcCCCEE
Confidence 88865 7788655
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=97.22 E-value=0.00023 Score=60.20 Aligned_cols=89 Identities=13% Similarity=0.216 Sum_probs=54.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
|||+|+| +|.+|..+.+.|.+. ..++..+ +++.. .++... .. + -.... ..+.+.+.++|+||+|+|.....
T Consensus 1 MkI~iIG-~G~mG~~lA~~l~~~-g~~V~~~-d~~~~--~~~~a~-~~-~-~~~~~-~~~~~~~~~~DiIilavp~~~~~ 71 (165)
T d2f1ka2 1 MKIGVVG-LGLIGASLAGDLRRR-GHYLIGV-SRQQS--TCEKAV-ER-Q-LVDEA-GQDLSLLQTAKIIFLCTPIQLIL 71 (165)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHT-TCEEEEE-CSCHH--HHHHHH-HT-T-SCSEE-ESCGGGGTTCSEEEECSCHHHHH
T ss_pred CEEEEEe-ecHHHHHHHHHHHHC-CCEEEEE-ECCch--HHHHHH-Hh-h-cccee-eeecccccccccccccCcHhhhh
Confidence 5899999 799999999998754 3466554 54321 111100 00 0 00001 11123457899999999977655
Q ss_pred HHHhh----CCCCCEEEEcCCc
Q 015441 144 EIIKG----LPKSLKIVDLSAD 161 (406)
Q Consensus 144 ~~~~~----l~~G~~VIDlSa~ 161 (406)
+.++. +..+..|+|.++.
T Consensus 72 ~vl~~l~~~l~~~~iv~~~~s~ 93 (165)
T d2f1ka2 72 PTLEKLIPHLSPTAIVTDVASV 93 (165)
T ss_dssp HHHHHHGGGSCTTCEEEECCSC
T ss_pred hhhhhhhhhcccccceeecccc
Confidence 55543 4567899998764
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=97.12 E-value=0.00038 Score=62.16 Aligned_cols=95 Identities=13% Similarity=0.219 Sum_probs=59.7
Q ss_pred ccCCccEEEEECcccHHHH-HHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccC--CCCCEEE
Q 015441 59 KSEKQVRIGLLGASGYTGA-EIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVF 134 (406)
Q Consensus 59 ~~~~~ikVaIvGATG~vG~-eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF 134 (406)
.+++++|||||| .|.+|+ .+++.+..++.++++++.++... .+.+.+.+ .+.......+.++ ++.+ .++|+|+
T Consensus 29 ~~~~~iriaiIG-~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~-~i~~~~~~~~~d~-~ell~~~~iD~V~ 105 (221)
T d1h6da1 29 PEDRRFGYAIVG-LGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEY-GVDPRKIYDYSNF-DKIAKDPKIDAVY 105 (221)
T ss_dssp CCCCCEEEEEEC-CSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHT-TCCGGGEECSSSG-GGGGGCTTCCEEE
T ss_pred CCCCCEEEEEEc-CcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhh-ccccccccccCch-hhhcccccceeee
Confidence 345679999999 799997 57888888999999999986421 11111111 0000000001111 1112 4789999
Q ss_pred EcCCCcchHHHHhh-CCCCCEEE
Q 015441 135 CCLPHGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 135 ~al~~~~s~~~~~~-l~~G~~VI 156 (406)
.|+|+..=.+++.. +++|..|+
T Consensus 106 I~tp~~~H~~~~~~al~~gk~v~ 128 (221)
T d1h6da1 106 IILPNSLHAEFAIRAFKAGKHVM 128 (221)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEE
T ss_pred eccchhhhhhHHHHhhhcchhhh
Confidence 99999877777754 58888776
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.10 E-value=0.00018 Score=62.03 Aligned_cols=90 Identities=17% Similarity=0.207 Sum_probs=58.9
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCccc--CCCCCEEEEcCCC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDAD--FSNVDAVFCCLPH 139 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~--~~~vDvVF~al~~ 139 (406)
++||||+| .|.+|+..++.|...+.++++++.++... .+.+...+. +. .....+.++ ++. -.++|+|+.|+|+
T Consensus 1 kiki~iIG-~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~-~~-~~~~~~~~~-~~ll~~~~iD~v~I~tp~ 76 (184)
T d1ydwa1 1 QIRIGVMG-CADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANN-YP-ESTKIHGSY-ESLLEDPEIDALYVPLPT 76 (184)
T ss_dssp CEEEEEES-CCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTT-CC-TTCEEESSH-HHHHHCTTCCEEEECCCG
T ss_pred CeEEEEEc-CCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccc-cc-cceeecCcH-HHhhhccccceeeecccc
Confidence 47999999 79999999999998999999999875421 111111110 00 000011111 111 1478999999999
Q ss_pred cchHHHHhh-CCCCCEEE
Q 015441 140 GTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 140 ~~s~~~~~~-l~~G~~VI 156 (406)
..-.+++.. +++|+.|+
T Consensus 77 ~~h~~~~~~~l~~g~~v~ 94 (184)
T d1ydwa1 77 SLHVEWAIKAAEKGKHIL 94 (184)
T ss_dssp GGHHHHHHHHHTTTCEEE
T ss_pred hhhcchhhhhhhccceee
Confidence 988887765 58898775
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=97.07 E-value=0.00039 Score=58.81 Aligned_cols=92 Identities=17% Similarity=0.153 Sum_probs=54.7
Q ss_pred ccEEEEECcccHHHHHHHHHHHc-CCCceEEEEeccCcCCccccccccCccccCCCc-ccccCcccCCCCCEEEEcCCCc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLAN-HPYFGIKLMTADRKAGQSIGSVFPHLISQDLPT-MVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~-hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~-~~~~~~~~~~~vDvVF~al~~~ 140 (406)
|.||+|+| .|.+|..|++.|.+ .+..++..+ +++... ++... .. + .... ....+.....++|+||+|+|..
T Consensus 1 Mk~I~IIG-~G~mG~sla~~L~~~g~~~~I~~~-D~~~~~--~~~a~-~~-~-~~~~~~~~~~~~~~~~~dlIila~p~~ 73 (171)
T d2g5ca2 1 MQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGY-DINPES--ISKAV-DL-G-IIDEGTTSIAKVEDFSPDFVMLSSPVR 73 (171)
T ss_dssp CCEEEEES-CSHHHHHHHHHHHHTTCCSEEEEE-CSCHHH--HHHHH-HT-T-SCSEEESCGGGGGGTCCSEEEECSCHH
T ss_pred CCEEEEEc-cCHHHHHHHHHHHhcCCCeEEEEE-ECChHH--HHHHH-Hh-h-cchhhhhhhhhhhccccccccccCCch
Confidence 45899999 79999999998874 456676665 332211 01000 00 0 0000 1111111224789999999987
Q ss_pred chHHHHh----hCCCCCEEEEcCCc
Q 015441 141 TTQEIIK----GLPKSLKIVDLSAD 161 (406)
Q Consensus 141 ~s~~~~~----~l~~G~~VIDlSa~ 161 (406)
...+.+. .+..+..|+|.++.
T Consensus 74 ~~~~vl~~l~~~~~~~~ii~d~~s~ 98 (171)
T d2g5ca2 74 TFREIAKKLSYILSEDATVTDQGSV 98 (171)
T ss_dssp HHHHHHHHHHHHSCTTCEEEECCSC
T ss_pred hhhhhhhhhhccccccccccccccc
Confidence 6656543 34678899999874
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=97.06 E-value=0.00037 Score=64.99 Aligned_cols=32 Identities=19% Similarity=0.444 Sum_probs=27.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|||.|.||||++|+.|++.|+++.+.+++.+.
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld 32 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLD 32 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 48999999999999999988876667887774
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=97.00 E-value=0.00031 Score=59.62 Aligned_cols=86 Identities=14% Similarity=0.189 Sum_probs=54.3
Q ss_pred ccEEEEECcccHHHHH-HHHHHHcCCCceEEEEeccCc-CCccccccccCccccCCCcccccCcccC-CCCCEEEEcCCC
Q 015441 63 QVRIGLLGASGYTGAE-IVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAVKDADF-SNVDAVFCCLPH 139 (406)
Q Consensus 63 ~ikVaIvGATG~vG~e-LlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~l~~~~~~~~~~~~~~~~-~~vDvVF~al~~ 139 (406)
++||||+| .|.+|+. .++.|..+++++++ +.++.. ..+.+..-++.- ..+.+. ++.+ .++|+|+.|+|+
T Consensus 1 tirvgiiG-~G~~~~~~~~~~l~~~~~~~~~-~~d~~~~~~~~~~~~~~~~-----~~~~~~-~~ll~~~iD~V~I~tp~ 72 (167)
T d1xeaa1 1 SLKIAMIG-LGDIAQKAYLPVLAQWPDIELV-LCTRNPKVLGTLATRYRVS-----ATCTDY-RDVLQYGVDAVMIHAAT 72 (167)
T ss_dssp CEEEEEEC-CCHHHHHTHHHHHTTSTTEEEE-EECSCHHHHHHHHHHTTCC-----CCCSST-TGGGGGCCSEEEECSCG
T ss_pred CeEEEEEc-CCHHHHHHHHHHHHhCCCcEEE-EEECCHHHHHHHHHhcccc-----cccccH-HHhcccccceecccccc
Confidence 47999999 7888866 68888899999987 454332 222222211110 001111 1111 368999999999
Q ss_pred cchHHHHhh-CCCCCEEE
Q 015441 140 GTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 140 ~~s~~~~~~-l~~G~~VI 156 (406)
..-.+++.+ +++|+.|+
T Consensus 73 ~~H~~~~~~al~~gk~V~ 90 (167)
T d1xeaa1 73 DVHSTLAAFFLHLGIPTF 90 (167)
T ss_dssp GGHHHHHHHHHHTTCCEE
T ss_pred cccccccccccccccccc
Confidence 888887765 58888765
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.96 E-value=0.00022 Score=59.74 Aligned_cols=88 Identities=13% Similarity=0.148 Sum_probs=54.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
|||+|+| .|..|+.+.+.|.++ .+++.....++..-... ........... .+...++|+||+|++.....
T Consensus 1 MkIgiIG-~G~mG~~ia~~l~~~-g~~v~~~~~~~~~~~~~-------~~~~~~~~~~~-~e~~~~~diIi~~v~~~~~~ 70 (152)
T d1i36a2 1 LRVGFIG-FGEVAQTLASRLRSR-GVEVVTSLEGRSPSTIE-------RARTVGVTETS-EEDVYSCPVVISAVTPGVAL 70 (152)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHT-TCEEEECCTTCCHHHHH-------HHHHHTCEECC-HHHHHTSSEEEECSCGGGHH
T ss_pred CEEEEEc-HHHHHHHHHHHHHHC-CCeEEEEcCchhHHHHH-------hhhcccccccH-HHHHhhcCeEEEEecCchHH
Confidence 5899999 999999999999875 35665544322211100 00011111111 22336799999999998877
Q ss_pred HHHhhC--CCCCEEEEcCCc
Q 015441 144 EIIKGL--PKSLKIVDLSAD 161 (406)
Q Consensus 144 ~~~~~l--~~G~~VIDlSa~ 161 (406)
+.+... ..+..+||+|..
T Consensus 71 ~~~~~~~~~~~~~~id~st~ 90 (152)
T d1i36a2 71 GAARRAGRHVRGIYVDINNI 90 (152)
T ss_dssp HHHHHHHTTCCSEEEECSCC
T ss_pred HHHHhhcccCCceeeccCcC
Confidence 766543 236789999875
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=96.94 E-value=0.00052 Score=56.39 Aligned_cols=68 Identities=16% Similarity=0.215 Sum_probs=50.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
+||+|+||+|..|+++.+++.+. ..+++...+... .+.+.++|+|+..+.+..+.
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~-~~~l~~~id~~~------------------------~~~~~~~DVvIDFS~p~~~~ 55 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEK-GHELVLKVDVNG------------------------VEELDSPDVVIDFSSPEALP 55 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEEETTE------------------------EEECSCCSEEEECSCGGGHH
T ss_pred CEEEEECCCCHHHHHHHHHHhcC-CCeEEEEECCCc------------------------HHHhccCCEEEEecCHHHHH
Confidence 58999999999999999987654 456655433110 12345689999999999998
Q ss_pred HHHhhC-CCCCEEE
Q 015441 144 EIIKGL-PKSLKIV 156 (406)
Q Consensus 144 ~~~~~l-~~G~~VI 156 (406)
+.++.+ +.++.+|
T Consensus 56 ~~l~~~~~~~~p~V 69 (128)
T d1vm6a3 56 KTVDLCKKYRAGLV 69 (128)
T ss_dssp HHHHHHHHHTCEEE
T ss_pred HHHHHHHhcCCCEE
Confidence 888765 6677666
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.93 E-value=0.00031 Score=57.49 Aligned_cols=95 Identities=13% Similarity=0.120 Sum_probs=62.0
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccC--cCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR--KAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH 139 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~--~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~ 139 (406)
++.||+|+| +|..|+.|++.|..+..++++++.++. ..|+.+.-+ |-+ ....+..+ .-..+++++.|+|.
T Consensus 2 ~~~~v~I~G-aG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I~Gi-~V~---~~~~l~~~---~~~~i~iai~~i~~ 73 (126)
T d2dt5a2 2 RKWGLCIVG-MGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRGG-VIE---HVDLLPQR---VPGRIEIALLTVPR 73 (126)
T ss_dssp SCEEEEEEC-CSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEETTE-EEE---EGGGHHHH---STTTCCEEEECSCH
T ss_pred CCceEEEEc-CCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEECCE-EEe---cHHHHHHH---HhhcccEEEEeCCH
Confidence 457999999 999999999988777889999998754 345444311 001 00111111 11468999999998
Q ss_pred cchHHHHhhC-CCCCEEEEcCCcccC
Q 015441 140 GTTQEIIKGL-PKSLKIVDLSADFRL 164 (406)
Q Consensus 140 ~~s~~~~~~l-~~G~~VIDlSa~fRl 164 (406)
...+++...+ +.|++-|-.=++.++
T Consensus 74 ~~~~~I~d~l~~~gIk~I~~f~~~~l 99 (126)
T d2dt5a2 74 EAAQKAADLLVAAGIKGILNFAPVVL 99 (126)
T ss_dssp HHHHHHHHHHHHHTCCEEEECSSSCC
T ss_pred HHHHHHHHHHHHcCCCEEeecCceee
Confidence 8888888766 568774433233444
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=96.91 E-value=0.00038 Score=59.91 Aligned_cols=87 Identities=22% Similarity=0.361 Sum_probs=56.0
Q ss_pred ccEEEEECcccHHHHH-HHHHHHcCCC-ceEEEEeccCcC-CccccccccCccccCCCcccccCcccC--CCCCEEEEcC
Q 015441 63 QVRIGLLGASGYTGAE-IVRLLANHPY-FGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADF--SNVDAVFCCL 137 (406)
Q Consensus 63 ~ikVaIvGATG~vG~e-LlrlL~~hp~-~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vDvVF~al 137 (406)
++||||+| +|.+|+. .++.+.++++ ++++++.++... .+.+...++ . . ..+.++ ++.+ .++|+|+.|+
T Consensus 3 kirigiIG-~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~---~-~-~~~~~~-~ell~~~~id~v~I~t 75 (181)
T d1zh8a1 3 KIRLGIVG-CGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVG---N-P-AVFDSY-EELLESGLVDAVDLTL 75 (181)
T ss_dssp CEEEEEEC-CSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHS---S-C-EEESCH-HHHHHSSCCSEEEECC
T ss_pred CcEEEEEc-CCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhcccc---c-c-ceeeee-eccccccccceeeccc
Confidence 47999999 8999987 5888887655 799999876431 111111111 0 0 001111 1111 4689999999
Q ss_pred CCcchHHHHhh-CCCCCEEE
Q 015441 138 PHGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 138 ~~~~s~~~~~~-l~~G~~VI 156 (406)
|+..-.+++.. +++|+.|+
T Consensus 76 p~~~h~~~~~~al~~gk~V~ 95 (181)
T d1zh8a1 76 PVELNLPFIEKALRKGVHVI 95 (181)
T ss_dssp CGGGHHHHHHHHHHTTCEEE
T ss_pred cccccccccccccccchhhh
Confidence 99887887765 58888766
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=96.88 E-value=0.0015 Score=54.27 Aligned_cols=82 Identities=23% Similarity=0.357 Sum_probs=55.9
Q ss_pred cccCCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcC
Q 015441 58 QKSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCL 137 (406)
Q Consensus 58 ~~~~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al 137 (406)
.+..+|.||+|||+.|.+|+.|.+.|.+.- +++..+ +++.. ........++|++++|+
T Consensus 4 ~~~~~~~kI~iIGg~G~mG~~la~~L~~~G-~~V~~~-d~~~~--------------------~~~~~~~~~~~~v~~~~ 61 (152)
T d2pv7a2 4 TINSDIHKIVIVGGYGKLGGLFARYLRASG-YPISIL-DREDW--------------------AVAESILANADVVIVSV 61 (152)
T ss_dssp CSCTTCCCEEEETTTSHHHHHHHHHHHTTT-CCEEEE-CTTCG--------------------GGHHHHHTTCSEEEECS
T ss_pred ccCCCCCeEEEEcCCCHHHHHHHHHHHHcC-CCcEec-ccccc--------------------cccchhhhhcccccccc
Confidence 345566799999999999999999998642 355443 22110 00011235789999999
Q ss_pred CCcchHHHHhh----CCCCCEEEEcCCc
Q 015441 138 PHGTTQEIIKG----LPKSLKIVDLSAD 161 (406)
Q Consensus 138 ~~~~s~~~~~~----l~~G~~VIDlSa~ 161 (406)
|.....+.... +.++..+||.++-
T Consensus 62 ~~~~~~~v~~~~~~~~~~~~iiiD~~Sv 89 (152)
T d2pv7a2 62 PINLTLETIERLKPYLTENMLLADLTSV 89 (152)
T ss_dssp CGGGHHHHHHHHGGGCCTTSEEEECCSC
T ss_pred chhhheeeeecccccccCCceEEEeccc
Confidence 98777665543 3578999999874
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.81 E-value=0.00085 Score=63.01 Aligned_cols=35 Identities=20% Similarity=0.381 Sum_probs=27.8
Q ss_pred cCCccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 60 SEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 60 ~~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+++.|||.|.||||++|+.|++.|.+.. .+++.+.
T Consensus 12 ~~~nMKILVTGgsGfIGs~lv~~L~~~g-~~V~~~d 46 (363)
T d2c5aa1 12 PSENLKISITGAGGFIASHIARRLKHEG-HYVIASD 46 (363)
T ss_dssp TTSCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCc-CEEEEEe
Confidence 3456799999999999999999998653 4666553
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.75 E-value=0.00053 Score=57.59 Aligned_cols=89 Identities=19% Similarity=0.351 Sum_probs=56.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
|||+|+| +|..|+.|++-|.+.+ .++. +..++. .-+.+.+-+ + ....... .+..+++|+||+|.++...
T Consensus 1 MkIg~IG-~G~mG~al~~~l~~~~-~~i~-v~~r~~~~~~~l~~~~----g--~~~~~~~-~~~~~~~dvIilavkp~~~ 70 (152)
T d2ahra2 1 MKIGIIG-VGKMASAIIKGLKQTP-HELI-ISGSSLERSKEIAEQL----A--LPYAMSH-QDLIDQVDLVILGIKPQLF 70 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHTTSS-CEEE-EECSSHHHHHHHHHHH----T--CCBCSSH-HHHHHTCSEEEECSCGGGH
T ss_pred CEEEEEe-ccHHHHHHHHHHHhCC-CeEE-EEcChHHhHHhhcccc----c--eeeechh-hhhhhccceeeeecchHhH
Confidence 5899999 9999999999888765 3554 333321 111221111 1 1111111 1223689999999988877
Q ss_pred HHHHhhCCCCCEEEEcCCcc
Q 015441 143 QEIIKGLPKSLKIVDLSADF 162 (406)
Q Consensus 143 ~~~~~~l~~G~~VIDlSa~f 162 (406)
.+..+.+..+..||++.+..
T Consensus 71 ~~vl~~l~~~~~iis~~agi 90 (152)
T d2ahra2 71 ETVLKPLHFKQPIISMAAGI 90 (152)
T ss_dssp HHHHTTSCCCSCEEECCTTC
T ss_pred HHHhhhcccceeEecccccc
Confidence 88887787778889887754
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.68 E-value=0.00075 Score=56.59 Aligned_cols=32 Identities=31% Similarity=0.681 Sum_probs=26.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCc-eEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~ 95 (406)
|||+|+||+|.||+.+.-+|..++-. |++.+-
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D 33 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIG 33 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCccccccccc
Confidence 58999999999999999999987755 665553
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.68 E-value=0.00036 Score=60.21 Aligned_cols=34 Identities=26% Similarity=0.257 Sum_probs=26.9
Q ss_pred CccEEEEECcccHHHHHHHHHHHcC-CCceEEEEe
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANH-PYFGIKLMT 95 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~h-p~~elv~l~ 95 (406)
.|.+|.|.||||++|+.|++.|++. ..+.++.+.
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~ 36 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLV 36 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEE
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEc
Confidence 3578999999999999999988854 345666554
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.65 E-value=0.0029 Score=58.40 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=26.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.||.|.||||++|+.|++.|.+. ..+++++.
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~-g~~V~~~d 32 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMD-GHEVTVVD 32 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-cCEEEEEe
Confidence 58999999999999999999865 45777763
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=96.63 E-value=0.00038 Score=57.96 Aligned_cols=86 Identities=13% Similarity=0.242 Sum_probs=51.8
Q ss_pred EEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchHH
Q 015441 66 IGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQE 144 (406)
Q Consensus 66 VaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~~ 144 (406)
|++|| +|..|+.|++.|.+. .++..+.+|... .+.+.+.. +.. .... .+....+|+||+|+|...-.+
T Consensus 2 IgfIG-~G~mg~~l~~~L~~~--~~~~~v~~R~~~~~~~l~~~~----~~~---~~~~-~~~~~~~DiVil~v~d~~i~~ 70 (153)
T d2i76a2 2 LNFVG-TGTLTRFFLECLKDR--YEIGYILSRSIDRARNLAEVY----GGK---AATL-EKHPELNGVVFVIVPDRYIKT 70 (153)
T ss_dssp CEEES-CCHHHHHHHHTTC------CCCEECSSHHHHHHHHHHT----CCC---CCSS-CCCCC---CEEECSCTTTHHH
T ss_pred EEEEe-CcHHHHHHHHHHHhC--CCEEEEEeCChhhhcchhhcc----ccc---ccch-hhhhccCcEEEEeccchhhhH
Confidence 68999 999999999988652 344445554321 11222111 111 1111 233467899999999988888
Q ss_pred HHhhCC-CCCEEEEcCCcc
Q 015441 145 IIKGLP-KSLKIVDLSADF 162 (406)
Q Consensus 145 ~~~~l~-~G~~VIDlSa~f 162 (406)
.+..+. .+..|||.|+..
T Consensus 71 v~~~l~~~~~ivi~~s~~~ 89 (153)
T d2i76a2 71 VANHLNLGDAVLVHCSGFL 89 (153)
T ss_dssp HHTTTCCSSCCEEECCSSS
T ss_pred HHhhhcccceeeeecccch
Confidence 888774 578899999865
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.54 E-value=0.00053 Score=58.42 Aligned_cols=86 Identities=13% Similarity=0.229 Sum_probs=53.0
Q ss_pred cCCccEEEEECcccHHHHHHHHHHHcCCCceEEEEec---cCcCCccccccccCccccCCCcccccCcccCCCCCEEEEc
Q 015441 60 SEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA---DRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCC 136 (406)
Q Consensus 60 ~~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s---~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~a 136 (406)
+..++||||+| +|.+|+..++.|..++..+++.+.+ ++....... +...+ ++++ -.-.++|+|+.|
T Consensus 4 ~~~k~kv~iIG-~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---~~e~--l~~~~iD~V~I~ 72 (172)
T d1lc0a1 4 NSGKFGVVVVG-VGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDE-----VRQIS---LEDA--LRSQEIDVAYIC 72 (172)
T ss_dssp CCCSEEEEEEC-CSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCCEETT-----EEBCC---HHHH--HHCSSEEEEEEC
T ss_pred CCCCcEEEEEc-CCHHHHHHHHHHHhCCCCcEEEEEeccchHHHHHhhc-----cCcCC---HHHH--HhCCCcchhhhc
Confidence 45568999999 7999999999998766554444443 322111100 01001 1110 001368999999
Q ss_pred CCCcchHHHHhh-CCCCCEEE
Q 015441 137 LPHGTTQEIIKG-LPKSLKIV 156 (406)
Q Consensus 137 l~~~~s~~~~~~-l~~G~~VI 156 (406)
+|+..=.+++.. +++|..|+
T Consensus 73 tp~~~H~~~~~~al~~gk~V~ 93 (172)
T d1lc0a1 73 SESSSHEDYIRQFLQAGKHVL 93 (172)
T ss_dssp SCGGGHHHHHHHHHHTTCEEE
T ss_pred ccccccccccccccccchhhh
Confidence 999877777765 57888765
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=96.54 E-value=0.0019 Score=53.64 Aligned_cols=94 Identities=16% Similarity=0.138 Sum_probs=52.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
|||+|+|+ |.+|..+...|.+. ..++..+.........+............ .......+...++|++|+|++.....
T Consensus 1 MkI~IiGa-G~iG~~~a~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~iii~vka~~~~ 77 (167)
T d1ks9a2 1 MKITVLGC-GALGQLWLTALCKQ-GHEVQGWLRVPQPYCSVNLVETDGSIFNE-SLTANDPDFLATSDLLLVTLKAWQVS 77 (167)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHT-TCEEEEECSSCCSEEEEEEECTTSCEEEE-EEEESCHHHHHTCSEEEECSCGGGHH
T ss_pred CEEEEECc-CHHHHHHHHHHHHC-CCceEEEEcCHHHhhhhccccCCcccccc-ccccchhhhhcccceEEEeecccchH
Confidence 68999995 99999999999864 23666665322222222211111100000 01111122345789999999987666
Q ss_pred HHHhh----CCCCCEEEEcCC
Q 015441 144 EIIKG----LPKSLKIVDLSA 160 (406)
Q Consensus 144 ~~~~~----l~~G~~VIDlSa 160 (406)
+.++. +..+..|+.+..
T Consensus 78 ~~~~~l~~~~~~~~~Iv~~qN 98 (167)
T d1ks9a2 78 DAVKSLASTLPVTTPILLIHN 98 (167)
T ss_dssp HHHHHHHTTSCTTSCEEEECS
T ss_pred HHHHhhccccCcccEEeeccC
Confidence 65543 345677776544
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=96.49 E-value=0.0014 Score=54.65 Aligned_cols=89 Identities=11% Similarity=0.201 Sum_probs=53.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
|||+++| .|..|+.+++-|.+....++. +.+++.. -+.+..-+ ...... +.++..++|+||+|.++..-
T Consensus 1 MkI~fIG-~G~MG~ai~~~l~~~~~~~i~-v~~r~~~~~~~l~~~~------~~~~~~--~~~~v~~~Div~lavkP~~~ 70 (152)
T d1yqga2 1 MNVYFLG-GGNMAAAVAGGLVKQGGYRIY-IANRGAEKRERLEKEL------GVETSA--TLPELHSDDVLILAVKPQDM 70 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHCSCEEE-EECSSHHHHHHHHHHT------CCEEES--SCCCCCTTSEEEECSCHHHH
T ss_pred CEEEEEc-CcHHHHHHHHHHHHCCCCcEE-EEeCChhHHHHhhhhc------cccccc--ccccccccceEEEecCHHHH
Confidence 5899999 799999999977644334554 4444321 01111111 111111 12345678999999987666
Q ss_pred HHHHhhC-CCCCEEEEcCCcc
Q 015441 143 QEIIKGL-PKSLKIVDLSADF 162 (406)
Q Consensus 143 ~~~~~~l-~~G~~VIDlSa~f 162 (406)
.+..+.+ ..+..||++.+..
T Consensus 71 ~~v~~~l~~~~~~viS~~ag~ 91 (152)
T d1yqga2 71 EAACKNIRTNGALVLSVAAGL 91 (152)
T ss_dssp HHHHTTCCCTTCEEEECCTTC
T ss_pred HHhHHHHhhcccEEeecccCC
Confidence 6666665 4467888877654
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.05 E-value=0.01 Score=51.12 Aligned_cols=80 Identities=14% Similarity=0.271 Sum_probs=52.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcc--
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT-- 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~-- 141 (406)
.+|+|+| .|.+|+++.++|..+- +++..+. +... . . .......+ ++.+..+|+|.+++|-..
T Consensus 43 k~vgIiG-~G~IG~~va~~l~~~g-~~v~~~d-~~~~----~-------~-~~~~~~~l-~ell~~sDiv~~~~pl~~~t 106 (181)
T d1qp8a1 43 EKVAVLG-LGEIGTRVGKILAALG-AQVRGFS-RTPK----E-------G-PWRFTNSL-EEALREARAAVCALPLNKHT 106 (181)
T ss_dssp CEEEEES-CSTHHHHHHHHHHHTT-CEEEEEC-SSCC----C-------S-SSCCBSCS-HHHHTTCSEEEECCCCSTTT
T ss_pred ceEEEec-cccccccceeeeeccc-ccccccc-cccc----c-------c-ceeeeech-hhhhhccchhhccccccccc
Confidence 5799999 9999999999998764 5766653 2211 0 0 00011122 334678999999998432
Q ss_pred ----hHHHHhhCCCCCEEEEcC
Q 015441 142 ----TQEIIKGLPKSLKIVDLS 159 (406)
Q Consensus 142 ----s~~~~~~l~~G~~VIDlS 159 (406)
..+....+..|+.+|..|
T Consensus 107 ~~li~~~~l~~mk~~ailIN~~ 128 (181)
T d1qp8a1 107 RGLVKYQHLALMAEDAVFVNVG 128 (181)
T ss_dssp TTCBCHHHHTTSCTTCEEEECS
T ss_pred ccccccceeeeccccceEEecc
Confidence 244555567899999766
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.04 E-value=0.0021 Score=54.07 Aligned_cols=89 Identities=15% Similarity=0.234 Sum_probs=53.7
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
|.||+++| .|..|..+++.|.++- +++... +++. ++... +........... .+....+|+++.|++...+
T Consensus 1 M~kIg~IG-lG~MG~~iA~~L~~~g-~~v~~~-d~~~--~~~~~----~~~~~~~~~~~~-~e~~~~~diii~~v~~~~~ 70 (162)
T d3cuma2 1 MKQIAFIG-LGHMGAPMATNLLKAG-YLLNVF-DLVQ--SAVDG----LVAAGASAARSA-RDAVQGADVVISMLPASQH 70 (162)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHTT-CEEEEE-CSSH--HHHHH----HHHTTCEECSSH-HHHHTSCSEEEECCSCHHH
T ss_pred CCEEEEEE-EHHHHHHHHHHHHHCC-CeEEEE-ECch--hhhhh----hhhhhccccchh-hhhccccCeeeecccchhh
Confidence 56899999 9999999999988753 465444 3321 11111 000000000011 2234679999999998766
Q ss_pred HHHH--------hhCCCCCEEEEcCCc
Q 015441 143 QEII--------KGLPKSLKIVDLSAD 161 (406)
Q Consensus 143 ~~~~--------~~l~~G~~VIDlSa~ 161 (406)
.+.+ +.+..|..+||+|.-
T Consensus 71 ~~~v~~~~~~~~~~l~~g~iiid~st~ 97 (162)
T d3cuma2 71 VEGLYLDDDGLLAHIAPGTLVLECSTI 97 (162)
T ss_dssp HHHHHHSTTCHHHHSCTTCEEEECSCC
T ss_pred HHHHHhccccccccCCCCCEEEECCCC
Confidence 4422 224568899999875
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.00 E-value=0.0016 Score=54.44 Aligned_cols=31 Identities=35% Similarity=0.596 Sum_probs=26.0
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCc-eEEEEe
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYF-GIKLMT 95 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~-elv~l~ 95 (406)
||+|+||+|.||..+.-+|...+.+ |++.+-
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiD 33 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYD 33 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEE
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEe
Confidence 8999999999999999999877664 566553
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=95.94 E-value=0.0015 Score=54.96 Aligned_cols=88 Identities=17% Similarity=0.332 Sum_probs=52.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
|||+|+| .|..|+.+++.|.+.. +++... ++.. ++... +........... .+...++|++|+|+|.....
T Consensus 1 MkIgiIG-lG~MG~~~A~~L~~~G-~~V~~~-d~~~--~~~~~----~~~~~~~~~~~~-~e~~~~~d~ii~~v~~~~~v 70 (161)
T d1vpda2 1 MKVGFIG-LGIMGKPMSKNLLKAG-YSLVVS-DRNP--EAIAD----VIAAGAETASTA-KAIAEQCDVIITMLPNSPHV 70 (161)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTT-CEEEEE-CSCH--HHHHH----HHHTTCEECSSH-HHHHHHCSEEEECCSSHHHH
T ss_pred CEEEEEe-hhHHHHHHHHHHHHCC-CeEEEE-eCCc--chhHH----HHHhhhhhcccH-HHHHhCCCeEEEEcCCHHHH
Confidence 5899999 9999999999888653 455443 3321 11111 000011101111 12235799999999876554
Q ss_pred HH-H-------hhCCCCCEEEEcCCc
Q 015441 144 EI-I-------KGLPKSLKIVDLSAD 161 (406)
Q Consensus 144 ~~-~-------~~l~~G~~VIDlSa~ 161 (406)
+. . +.+.+|..+||.|..
T Consensus 71 ~~v~~~~~~~~~~~~~g~iiid~sT~ 96 (161)
T d1vpda2 71 KEVALGENGIIEGAKPGTVLIDMSSI 96 (161)
T ss_dssp HHHHHSTTCHHHHCCTTCEEEECSCC
T ss_pred HHHHhCCcchhhccCCCCEEEECCCC
Confidence 32 2 224568899999875
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=95.94 E-value=0.0023 Score=54.18 Aligned_cols=92 Identities=13% Similarity=0.217 Sum_probs=52.4
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc-
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG- 140 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~- 140 (406)
..+|+|+|| |-+|+.+++.|..+..-++ .+..|.. ....+..- +..... .+.++ .+.+.++|+||.|++..
T Consensus 24 ~~~ilviGa-G~~g~~v~~~L~~~g~~~i-~v~nRt~~ka~~l~~~---~~~~~~-~~~~~-~~~l~~~Divi~atss~~ 96 (159)
T d1gpja2 24 DKTVLVVGA-GEMGKTVAKSLVDRGVRAV-LVANRTYERAVELARD---LGGEAV-RFDEL-VDHLARSDVVVSATAAPH 96 (159)
T ss_dssp TCEEEEESC-CHHHHHHHHHHHHHCCSEE-EEECSSHHHHHHHHHH---HTCEEC-CGGGH-HHHHHTCSEEEECCSSSS
T ss_pred cCeEEEECC-CHHHHHHHHHHHhcCCcEE-EEEcCcHHHHHHHHHh---hhcccc-cchhH-HHHhccCCEEEEecCCCC
Confidence 468999995 9999999999987643344 4444431 11111111 111111 12222 22345899999999865
Q ss_pred --chHHHHhh-C---C--CCCEEEEcCCc
Q 015441 141 --TTQEIIKG-L---P--KSLKIVDLSAD 161 (406)
Q Consensus 141 --~s~~~~~~-l---~--~G~~VIDlSa~ 161 (406)
+.++..+. + . +...+||++-+
T Consensus 97 ~ii~~~~i~~~~~~r~~~~~~~iiDlavP 125 (159)
T d1gpja2 97 PVIHVDDVREALRKRDRRSPILIIDIANP 125 (159)
T ss_dssp CCBCHHHHHHHHHHCSSCCCEEEEECCSS
T ss_pred ccccHhhhHHHHHhcccCCCeEEEeecCC
Confidence 44555532 2 1 23479999754
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=95.93 E-value=0.0017 Score=58.22 Aligned_cols=90 Identities=12% Similarity=0.203 Sum_probs=53.3
Q ss_pred ccCCccEEEEECcc---cHHHHHHHHHHHc-CCCceEEEEeccCcCC-ccccccccCccccCCCcccccCcccC--CCCC
Q 015441 59 KSEKQVRIGLLGAS---GYTGAEIVRLLAN-HPYFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDADF--SNVD 131 (406)
Q Consensus 59 ~~~~~ikVaIvGAT---G~vG~eLlrlL~~-hp~~elv~l~s~~~~G-~~i~~v~p~l~~~~~~~~~~~~~~~~--~~vD 131 (406)
.+.+++||||||+. |++++.-+..+.+ .|.+++++++++...- +...+-+ .......+..+ ++.+ .++|
T Consensus 12 ~~~k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~---~~~~~~~~~~~-~~l~~~~~iD 87 (237)
T d2nvwa1 12 PSSRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQL---QLKHATGFDSL-ESFAQYKDID 87 (237)
T ss_dssp GGGCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHT---TCTTCEEESCH-HHHHHCTTCS
T ss_pred CCCCCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhc---ccccceeecch-hhcccccccc
Confidence 34566999999964 5788877777764 6889999998754211 1111111 00011011111 1111 4789
Q ss_pred EEEEcCCCcchHHHHhh-CCCC
Q 015441 132 AVFCCLPHGTTQEIIKG-LPKS 152 (406)
Q Consensus 132 vVF~al~~~~s~~~~~~-l~~G 152 (406)
+|+.|+|+..-.+++.. +++|
T Consensus 88 ~V~i~tp~~~h~~~~~~al~aG 109 (237)
T d2nvwa1 88 MIVVSVKVPEHYEVVKNILEHS 109 (237)
T ss_dssp EEEECSCHHHHHHHHHHHHHHS
T ss_pred eeeccCCCcchhhHHHHHHHhc
Confidence 99999998887777654 4555
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=95.91 E-value=0.0041 Score=52.36 Aligned_cols=37 Identities=19% Similarity=0.493 Sum_probs=32.6
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCC-CceEEEEeccCc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHP-YFGIKLMTADRK 99 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp-~~elv~l~s~~~ 99 (406)
|.||+|+|+||-||++.++.+.+|| .+++++++..+.
T Consensus 1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~N 38 (151)
T d1q0qa2 1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKN 38 (151)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESSC
T ss_pred CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecCc
Confidence 5689999999999999999999987 589999986544
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=95.89 E-value=0.0035 Score=52.74 Aligned_cols=37 Identities=24% Similarity=0.446 Sum_probs=32.6
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCC-ceEEEEeccCc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPY-FGIKLMTADRK 99 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~-~elv~l~s~~~ 99 (406)
+.||+|+|+||-||.+.++.+.+||+ +++++++..+.
T Consensus 2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~N 39 (150)
T d1r0ka2 2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRN 39 (150)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSC
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCCC
Confidence 46899999999999999999999875 89999987554
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=95.88 E-value=0.0021 Score=53.53 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=41.2
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCc-eEEEEecc--C---cCCccccccccC-ccccCCCcccccCcccCCCCCEEEEcC
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYF-GIKLMTAD--R---KAGQSIGSVFPH-LISQDLPTMVAVKDADFSNVDAVFCCL 137 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~--~---~~G~~i~~v~p~-l~~~~~~~~~~~~~~~~~~vDvVF~al 137 (406)
||+|+||+|.||+.+.-+|...+.. |++.+ +. + ..|...+..|.. +.. .. .+..-+.+++.++|+|+.+.
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~-Di~~~~~~~~g~a~Dl~~~~~~~~-~~-~i~~~~~~~~~~aDiVvita 78 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFV-DIPDKEDDTVGQAADTNHGIAYDS-NT-RVRQGGYEDTAGSDVVVITA 78 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEE-CCGGGHHHHHHHHHHHHHHHTTTC-CC-EEEECCGGGGTTCSEEEECC
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEE-ecCCcccccceeecchhhcccccC-Cc-eEeeCCHHHhhhcCEEEEec
Confidence 8999999999999999988876665 55544 42 1 113222221100 111 11 12222344567889888877
Q ss_pred C
Q 015441 138 P 138 (406)
Q Consensus 138 ~ 138 (406)
+
T Consensus 79 G 79 (142)
T d1o6za1 79 G 79 (142)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Homoserine dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.78 E-value=0.0064 Score=51.67 Aligned_cols=96 Identities=11% Similarity=0.119 Sum_probs=52.3
Q ss_pred cCCccEEEEECcccHHHHHHHHHHHcCC-C--ceEEEEeccCc-----CCccccccccC---ccccCCC--cccccC--c
Q 015441 60 SEKQVRIGLLGASGYTGAEIVRLLANHP-Y--FGIKLMTADRK-----AGQSIGSVFPH---LISQDLP--TMVAVK--D 124 (406)
Q Consensus 60 ~~~~ikVaIvGATG~vG~eLlrlL~~hp-~--~elv~l~s~~~-----~G~~i~~v~p~---l~~~~~~--~~~~~~--~ 124 (406)
++++++|+|+| .|-||+.++++|..+. . .+++.+++.+. .|..+.....+ +.....+ ....+. .
T Consensus 1 s~k~i~I~l~G-~G~VG~~l~~~l~~~~~~l~~~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T d1ebfa1 1 STKVVNVAVIG-AGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHL 79 (168)
T ss_dssp CCSEEEEEEEC-CSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHH
T ss_pred CCCEEEEEEEe-CCHHHHHHHHHHHHhHHHhhhheEEEEEeeeeeecccccchHhhhhhhhhhhhcccccccHHHHHHHh
Confidence 36789999999 9999999999988532 3 34555554321 11111100000 0000000 000000 0
Q ss_pred ccCCCCCEEEEcCCCcchHHHH-hhCCCCCEEE
Q 015441 125 ADFSNVDAVFCCLPHGTTQEII-KGLPKSLKIV 156 (406)
Q Consensus 125 ~~~~~vDvVF~al~~~~s~~~~-~~l~~G~~VI 156 (406)
.+....|+++.|++.....+.. +++++|+.||
T Consensus 80 ~~~~~~~vivd~t~~~~~~~~~~~aL~~G~hVV 112 (168)
T d1ebfa1 80 KTSPKPVILVDNTSSAYIAGFYTKFVENGISIA 112 (168)
T ss_dssp TTCSSCEEEEECSCCHHHHTTHHHHHHTTCEEE
T ss_pred ccCCCceEEEEecCChHHHHHHHHHHHcCCeEE
Confidence 0113567889999876665544 4568999999
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=95.66 E-value=0.0053 Score=51.14 Aligned_cols=73 Identities=14% Similarity=0.165 Sum_probs=41.1
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccCc---CCccccccccC-ccccCCCcccccCcccCCCCCEEEEcC
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADRK---AGQSIGSVFPH-LISQDLPTMVAVKDADFSNVDAVFCCL 137 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~~---~G~~i~~v~p~-l~~~~~~~~~~~~~~~~~~vDvVF~al 137 (406)
.+||+|+|| |++|..+...|...+-. |++.+ +... .|+..+.-|-. +.. .. ....-+.+++.++|+|+.+.
T Consensus 5 ~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~-D~~~~~~~g~a~Dl~~a~~~~~-~~-~~~~~d~~~~~~adivvita 80 (146)
T d1ez4a1 5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIV-DVVKDRTKGDALDLEDAQAFTA-PK-KIYSGEYSDCKDADLVVITA 80 (146)
T ss_dssp BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEE-CSSHHHHHHHHHHHHGGGGGSC-CC-EEEECCGGGGTTCSEEEECC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEe-ecccchhHHHHHHHhccccccC-Cc-eEeeccHHHhccccEEEEec
Confidence 469999995 99999999988876544 66655 4221 12211111100 001 00 11122344567899999987
Q ss_pred CC
Q 015441 138 PH 139 (406)
Q Consensus 138 ~~ 139 (406)
+.
T Consensus 81 g~ 82 (146)
T d1ez4a1 81 GA 82 (146)
T ss_dssp CC
T ss_pred cc
Confidence 64
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=95.63 E-value=0.0034 Score=54.07 Aligned_cols=35 Identities=29% Similarity=0.420 Sum_probs=26.3
Q ss_pred CCccEEEEECcccHHHHHHHHHHHc------CCCceEEEEe
Q 015441 61 EKQVRIGLLGASGYTGAEIVRLLAN------HPYFGIKLMT 95 (406)
Q Consensus 61 ~~~ikVaIvGATG~vG~eLlrlL~~------hp~~elv~l~ 95 (406)
.+.+||+|+||+|.||..|+-+|.+ ...+++..+.
T Consensus 22 k~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~d 62 (175)
T d7mdha1 22 KKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLG 62 (175)
T ss_dssp CCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEEC
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEec
Confidence 3457999999999999999988874 2234565554
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=95.62 E-value=0.0037 Score=52.11 Aligned_cols=31 Identities=29% Similarity=0.492 Sum_probs=24.3
Q ss_pred cEEEEECcccHHHHHHHHHHH-cCCCc-eEEEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLA-NHPYF-GIKLM 94 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~-~hp~~-elv~l 94 (406)
|||+|+||+|.||..+.-+|. +.+.. |++.+
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~ 33 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLY 33 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEe
Confidence 589999999999999988775 45554 55555
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=95.52 E-value=0.0025 Score=53.07 Aligned_cols=95 Identities=17% Similarity=0.266 Sum_probs=55.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccc--cCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLIS--QDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~--~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
.||.|+|| |.+|+.+++.|.++. .+++.+.......+.+..-++.... ......... ...+...|+++.++|...
T Consensus 3 K~IliiGa-G~~G~~~a~~L~~~g-~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~i~~~~~~~ 79 (182)
T d1e5qa1 3 KSVLMLGS-GFVTRPTLDVLTDSG-IKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAAL-DAEVAKHDLVISLIPYTF 79 (182)
T ss_dssp CEEEEECC-STTHHHHHHHHHTTT-CEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHH-HHHHTTSSEEEECSCGGG
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC-CEEEEEECChHHHHHHHhcccccccccccccchhhh-HhhhhccceeEeeccchh
Confidence 58999995 999999999999775 4765554222222222221211110 010000000 112357799999998876
Q ss_pred hHHHHhhC-CCCCEEEEcCCc
Q 015441 142 TQEIIKGL-PKSLKIVDLSAD 161 (406)
Q Consensus 142 s~~~~~~l-~~G~~VIDlSa~ 161 (406)
.......+ ..++.++|++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~ 100 (182)
T d1e5qa1 80 HATVIKSAIRQKKHVVTTSYV 100 (182)
T ss_dssp HHHHHHHHHHHTCEEECSSCC
T ss_pred hhHHHHHHHhhccceeecccC
Confidence 66655544 568899988753
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=95.51 E-value=0.0033 Score=52.67 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=23.1
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCC
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPY 88 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~ 88 (406)
+.+||+|+||+|.||+.++-+|...+.
T Consensus 3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l 29 (154)
T d1y7ta1 3 APVRVAVTGAAGQIGYSLLFRIAAGEM 29 (154)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhccc
Confidence 457999999999999999999986443
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=95.45 E-value=0.0039 Score=55.98 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=27.8
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
++.||.|.||||++|+.|++.|.++. .+++++.
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G-~~V~~~~ 34 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLG-HPTYVLF 34 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTT-CCEEEEC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEE
Confidence 45789999999999999999998764 5777664
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.43 E-value=0.0064 Score=50.65 Aligned_cols=31 Identities=35% Similarity=0.518 Sum_probs=24.4
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCc-eEEEE
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYF-GIKLM 94 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l 94 (406)
..||+|+|| |.||..+.-.|...+.. |++.+
T Consensus 6 ~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~ 37 (148)
T d1ldna1 6 GARVVVIGA-GFVGASYVFALMNQGIADEIVLI 37 (148)
T ss_dssp SCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEE
T ss_pred CCeEEEECc-CHHHHHHHHHHHhcCCCceEEEE
Confidence 368999996 99999999988865544 56654
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=95.42 E-value=0.0073 Score=51.18 Aligned_cols=30 Identities=17% Similarity=0.300 Sum_probs=24.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCc-eEEEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLM 94 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l 94 (406)
.||+|+|| |.||..+.-.|...+-+ |++.+
T Consensus 21 ~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLi 51 (160)
T d1i0za1 21 NKITVVGV-GQVGMACAISILGKSLADELALV 51 (160)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCCcEEEEE
Confidence 59999995 99999999999876655 56555
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.37 E-value=0.0025 Score=53.45 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=26.5
Q ss_pred CccEEEEECcccHHHHHHHHHHHcC------CCceEEEEec
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANH------PYFGIKLMTA 96 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~h------p~~elv~l~s 96 (406)
+.+||+|+||+|.||..++-.|.+. ...+++.+-.
T Consensus 2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~ 42 (154)
T d5mdha1 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDI 42 (154)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECC
T ss_pred CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecC
Confidence 4579999999999999999988742 3345666543
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.32 E-value=0.016 Score=47.09 Aligned_cols=86 Identities=19% Similarity=0.243 Sum_probs=57.2
Q ss_pred cEEEEECcc---cHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 64 VRIGLLGAS---GYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 64 ikVaIvGAT---G~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
.+|||+||| |..|..+++-|.++-..++..++-+. .+++ + .+.+..++ +.-..+|+|+.++|..
T Consensus 9 ksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~------~~i~----G--~~~y~sl~-dlp~~vDlvvi~vp~~ 75 (129)
T d2csua1 9 KGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKE------EEVQ----G--VKAYKSVK-DIPDEIDLAIIVVPKR 75 (129)
T ss_dssp SEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSC------SEET----T--EECBSSTT-SCSSCCSEEEECSCHH
T ss_pred CeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCc------cccC----C--eEeecchh-hcCCCCceEEEecChH
Confidence 479999998 99999999998875556888886432 1111 1 11111221 1114689999999999
Q ss_pred chHHHHhhC-CCCCE--EEEcCCccc
Q 015441 141 TTQEIIKGL-PKSLK--IVDLSADFR 163 (406)
Q Consensus 141 ~s~~~~~~l-~~G~~--VIDlSa~fR 163 (406)
...+.++.+ +.|++ || +|+-|.
T Consensus 76 ~~~~~~~~~~~~g~~~~vi-~s~Gf~ 100 (129)
T d2csua1 76 FVKDTLIQCGEKGVKGVVI-ITAGFG 100 (129)
T ss_dssp HHHHHHHHHHHHTCCEEEE-CCCSST
T ss_pred HhHHHHHHHHHcCCCEEEE-eccccc
Confidence 888888765 55653 44 677674
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=95.26 E-value=0.0062 Score=52.07 Aligned_cols=97 Identities=12% Similarity=0.242 Sum_probs=60.5
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEc------
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCC------ 136 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~a------ 136 (406)
.-||.|+| .|-+|.+-++.....- .++..+-.+...-+.+.+.++.........-+.+ .+.+.++|+|+.+
T Consensus 32 pa~V~ViG-aGvaG~~A~~~A~~lG-A~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l-~~~~~~aDivI~aalipG~ 108 (168)
T d1pjca1 32 PGKVVILG-GGVVGTEAAKMAVGLG-AQVQIFDINVERLSYLETLFGSRVELLYSNSAEI-ETAVAEADLLIGAVLVPGR 108 (168)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHH-HHHHHTCSEEEECCCCTTS
T ss_pred CcEEEEEC-CChHHHHHHHHHhhCC-CEEEEEeCcHHHHHHHHHhhcccceeehhhhhhH-HHhhccCcEEEEeeecCCc
Confidence 36899999 9999999999888764 4554443222211223333322111000000011 2234689999998
Q ss_pred -CCCcchHHHHhhCCCCCEEEEcCCcc
Q 015441 137 -LPHGTTQEIIKGLPKSLKIVDLSADF 162 (406)
Q Consensus 137 -l~~~~s~~~~~~l~~G~~VIDlSa~f 162 (406)
+|+-++++.++..+.|.+|||++.|.
T Consensus 109 ~aP~lIt~~mv~~Mk~GSVIVDvaidq 135 (168)
T d1pjca1 109 RAPILVPASLVEQMRTGSVIVDVAVDQ 135 (168)
T ss_dssp SCCCCBCHHHHTTSCTTCEEEETTCTT
T ss_pred ccCeeecHHHHhhcCCCcEEEEeecCC
Confidence 46777888888888999999999874
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=95.24 E-value=0.0066 Score=50.20 Aligned_cols=76 Identities=20% Similarity=0.246 Sum_probs=42.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc--CCccccccccC-ccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK--AGQSIGSVFPH-LISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~--~G~~i~~v~p~-l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
.||+|+|| |+||..+.-+|..++-.+++.+--... .|...+..|.. +..........-+.+++.++|+|+++.+..
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~~~~advvvitag~~ 80 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTSGAP 80 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSCC
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHHhcCCCEEEEeeecc
Confidence 48999995 999999999888766678666532221 12222211110 001111111112234567899999988743
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=95.13 E-value=0.016 Score=53.72 Aligned_cols=32 Identities=22% Similarity=0.468 Sum_probs=25.9
Q ss_pred ccEEEEECcccHHHHHHHHHHHcC-CCceEEEE
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANH-PYFGIKLM 94 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~h-p~~elv~l 94 (406)
|+||.|.||||++|+.|++.|.++ ..+.++.+
T Consensus 2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~ 34 (346)
T d1oc2a_ 2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVL 34 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEE
Confidence 679999999999999999988754 34565554
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=95.05 E-value=0.015 Score=44.03 Aligned_cols=86 Identities=13% Similarity=0.184 Sum_probs=50.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.||+|+| -|.+|+.+++.|.++- .++... +.+..-........ .... .+...+...+.++|.|+.+.+-....
T Consensus 6 K~v~ViG-lG~sG~s~a~~L~~~g-~~v~~~-D~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~d~vi~SPGi~~~~ 78 (93)
T d2jfga1 6 KNVVIIG-LGLTGLSCVDFFLARG-VTPRVM-DTRMTPPGLDKLPE---AVER-HTGSLNDEWLMAADLIVASPGIALAH 78 (93)
T ss_dssp CCEEEEC-CSHHHHHHHHHHHHTT-CCCEEE-ESSSSCTTGGGSCT---TSCE-EESBCCHHHHHHCSEEEECTTSCTTS
T ss_pred CEEEEEe-ECHHHHHHHHHHHHCC-CEEEEe-eCCcCchhHHHHhh---ccce-eecccchhhhccCCEEEECCCCCCCC
Confidence 4799999 6999999999999763 455444 33221111111100 0000 01122233356789999988766666
Q ss_pred HHHhhC-CCCCEEE
Q 015441 144 EIIKGL-PKSLKIV 156 (406)
Q Consensus 144 ~~~~~l-~~G~~VI 156 (406)
+..+.+ ++|+.||
T Consensus 79 ~~~~~a~~~gi~ii 92 (93)
T d2jfga1 79 PSLSAAADAGIEIV 92 (93)
T ss_dssp HHHHHHHHTTCEEE
T ss_pred HHHHHHHHcCCCeE
Confidence 666654 6788887
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=95.01 E-value=0.0089 Score=49.99 Aligned_cols=73 Identities=16% Similarity=0.241 Sum_probs=41.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc---CCcccccccc-CccccCCCcccccCcccCCCCCEEEEcCC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK---AGQSIGSVFP-HLISQDLPTMVAVKDADFSNVDAVFCCLP 138 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~---~G~~i~~v~p-~l~~~~~~~~~~~~~~~~~~vDvVF~al~ 138 (406)
.||+|+|| |.||..+.-+|..++-.|++.+ +... .|...+..|- .+..........-+.+++.++|+|+.+.+
T Consensus 4 ~KI~IIGa-G~VG~~~a~~l~~~~l~el~L~-Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag 80 (150)
T d1t2da1 4 AKIVLVGS-GMIGGVMATLIVQKNLGDVVLF-DIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAG 80 (150)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCEEEEE-CSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCS
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCCCeEEEE-eccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEecc
Confidence 58999995 9999999988887776687654 4321 1222221110 00111111111112345678999988876
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=94.99 E-value=0.015 Score=54.64 Aligned_cols=32 Identities=19% Similarity=0.424 Sum_probs=24.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEec
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA 96 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s 96 (406)
|||.|.||||++|+.|++.|++... +++...+
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~-~vv~~~d 32 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQ-DTVVNID 32 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCS-CEEEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-CEEEEEe
Confidence 4899999999999999999986543 3334433
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=94.94 E-value=0.033 Score=46.39 Aligned_cols=93 Identities=16% Similarity=0.175 Sum_probs=52.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc--------CCccccccccCccccCCCcccccC-cccCCCCCEEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK--------AGQSIGSVFPHLISQDLPTMVAVK-DADFSNVDAVF 134 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~--------~G~~i~~v~p~l~~~~~~~~~~~~-~~~~~~vDvVF 134 (406)
.||+|+| .|.+|..+...|.+.- .++..+ +++. .|.... ..+.............+ .+.+.++|++|
T Consensus 2 k~iaIiG-aG~~G~~~A~~l~~~G-~~V~~~-~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~e~~~~aD~ii 77 (184)
T d1bg6a2 2 KTYAVLG-LGNGGHAFAAYLALKG-QSVLAW-DIDAQRIKEIQDRGAIIA-EGPGLAGTAHPDLLTSDIGLAVKDADVIL 77 (184)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTT-CEEEEE-CSCHHHHHHHHHHTSEEE-ESSSCCEEECCSEEESCHHHHHTTCSEEE
T ss_pred CEEEEEC-ccHHHHHHHHHHHHCC-CEEEEE-ECCHHHHHHHHHcCCCch-hhhhhhhhhhhhhhhhhhHhHhcCCCEEE
Confidence 5899999 6999999999999754 465544 3321 111111 01111110111111111 22347899999
Q ss_pred EcCCCcchHHHHh----hCCCCCEEEEcCC
Q 015441 135 CCLPHGTTQEIIK----GLPKSLKIVDLSA 160 (406)
Q Consensus 135 ~al~~~~s~~~~~----~l~~G~~VIDlSa 160 (406)
+|++.......++ .+..+..||..++
T Consensus 78 i~v~~~~~~~~~~~i~~~l~~~~~iv~~~g 107 (184)
T d1bg6a2 78 IVVPAIHHASIAANIASYISEGQLIILNPG 107 (184)
T ss_dssp ECSCGGGHHHHHHHHGGGCCTTCEEEESSC
T ss_pred EEEchhHHHHHHHHhhhccCCCCEEEEeCC
Confidence 9999887666554 3456777775544
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=94.84 E-value=0.013 Score=48.22 Aligned_cols=30 Identities=30% Similarity=0.462 Sum_probs=24.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCc-eEEEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLM 94 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l 94 (406)
|||+|+|| |.+|..+...|...+-. |++.+
T Consensus 1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~ 31 (142)
T d1guza1 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLL 31 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCceEEEe
Confidence 58999996 99999999988876544 66555
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=94.78 E-value=0.011 Score=52.41 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=25.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|||.|.||||++|+.|++.|.++ ..+++++.
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~-g~~Vi~~~ 32 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGK-NVEVIPTD 32 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTS-SEEEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-CCEEEEee
Confidence 57999999999999999999865 35776653
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=94.72 E-value=0.02 Score=47.17 Aligned_cols=72 Identities=17% Similarity=0.336 Sum_probs=39.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccC--cCCccccccc--cCccccCCCcccccCcccCCCCCEEEEcCC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADR--KAGQSIGSVF--PHLISQDLPTMVAVKDADFSNVDAVFCCLP 138 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~--~~G~~i~~v~--p~l~~~~~~~~~~~~~~~~~~vDvVF~al~ 138 (406)
.||+|+|| |.||..+.-.|...+.. |++.+--.. ..|+.++--| +.. . .. ....-+.+++.++|+|+.+.+
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~-~-~~-~~~~~~~~~~~~adivvitag 77 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFM-G-QM-SLYAGDYSDVKDCDVIVVTAG 77 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCT-T-CE-EEC--CGGGGTTCSEEEECCC
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccC-C-Ce-eEeeCcHHHhCCCceEEEecc
Confidence 48999996 99999999988876655 565543111 2233222111 111 1 00 011112345678888888876
Q ss_pred C
Q 015441 139 H 139 (406)
Q Consensus 139 ~ 139 (406)
.
T Consensus 78 ~ 78 (142)
T d1y6ja1 78 A 78 (142)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=94.71 E-value=0.0091 Score=52.87 Aligned_cols=32 Identities=28% Similarity=0.455 Sum_probs=26.8
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+.||.|.||||++|+.|++.|.+.. .+++++.
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G-~~V~~l~ 34 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLG-HPTFLLV 34 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT-CCEEEEC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CeEEEEE
Confidence 4689999999999999999998653 5777775
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=94.67 E-value=0.0039 Score=55.72 Aligned_cols=30 Identities=30% Similarity=0.392 Sum_probs=24.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|||.|.||||++|+.|++.|.+.. +++.+.
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g--~~v~~~ 30 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVG--NLIALD 30 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTS--EEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC--CEEEEE
Confidence 589999999999999999998653 455553
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=94.62 E-value=0.008 Score=49.56 Aligned_cols=72 Identities=18% Similarity=0.280 Sum_probs=39.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccC---cCCccccccccC-ccccCCCcccccCcccCCCCCEEEEcCC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADR---KAGQSIGSVFPH-LISQDLPTMVAVKDADFSNVDAVFCCLP 138 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~---~~G~~i~~v~p~-l~~~~~~~~~~~~~~~~~~vDvVF~al~ 138 (406)
|||+|+|| |.||..+.-.|...+.. |++.+ +.. -.|+.++..+.. +.. .. ....-+.+++.++|+|+.+.+
T Consensus 1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~-Di~~~~~~g~~~Dl~~~~~~~~-~~-~~~~~~~~~~~~adivvitag 76 (140)
T d1a5za1 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLI-DVDKKRAEGDALDLIHGTPFTR-RA-NIYAGDYADLKGSDVVIVAAG 76 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEE-CSSHHHHHHHHHHHHHHGGGSC-CC-EEEECCGGGGTTCSEEEECCC
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEE-ecccccccchhccccccccccc-cc-cccCCcHHHhcCCCEEEEecc
Confidence 59999996 99999999877754443 66555 422 112211111100 001 11 111112345678899988876
Q ss_pred C
Q 015441 139 H 139 (406)
Q Consensus 139 ~ 139 (406)
.
T Consensus 77 ~ 77 (140)
T d1a5za1 77 V 77 (140)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.57 E-value=0.013 Score=49.44 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=24.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCc-eEEEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLM 94 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l 94 (406)
.||+|+|| |.||..+.-.|...+.. |++.+
T Consensus 20 ~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~ 50 (159)
T d2ldxa1 20 CKITVVGV-GDVGMACAISILLKGLADELALV 50 (159)
T ss_dssp CEEEEECC-SHHHHHHHHHHHTTTSCSEEEEE
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEE
Confidence 48999995 99999999999887766 56555
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.48 E-value=0.0077 Score=49.86 Aligned_cols=72 Identities=11% Similarity=0.125 Sum_probs=40.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCc-eEEEEeccC---cCCccccccc--cCccccCCCcccccCcccCCCCCEEEEcC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMTADR---KAGQSIGSVF--PHLISQDLPTMVAVKDADFSNVDAVFCCL 137 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~s~~---~~G~~i~~v~--p~l~~~~~~~~~~~~~~~~~~vDvVF~al 137 (406)
|||+|+|| |.||..+.-.|...+.+ |++.+ +.. ..|+.++-.| +.+. ........-+.+++.++|+|+++.
T Consensus 1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~-Di~~~~~~g~alDl~~~~~~~~-~~~~i~~~~d~~~~~~adiVvita 77 (142)
T d1ojua1 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALV-DIAEDLAVGEAMDLAHAAAGID-KYPKIVGGADYSLLKGSEIIVVTA 77 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEE-CSSHHHHHHHHHHHHHHHHTTT-CCCEEEEESCGGGGTTCSEEEECC
T ss_pred CEEEEECc-CHHHHHHHHHHHhcCcCceEEEE-ecccchhhHHHHHHhhhccccC-CCCccccCCCHHHhccccEEEEec
Confidence 58999996 99999999988855544 66655 322 1222221111 0010 011111112234667899999887
Q ss_pred C
Q 015441 138 P 138 (406)
Q Consensus 138 ~ 138 (406)
+
T Consensus 78 g 78 (142)
T d1ojua1 78 G 78 (142)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=94.44 E-value=0.013 Score=53.10 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=24.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceE
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGI 91 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~el 91 (406)
.||.|.||||++|+.|++.|++..+..+
T Consensus 3 kkIlITG~tGfiG~~l~~~L~~~g~~vi 30 (315)
T d1e6ua_ 3 QRVFIAGHRGMVGSAIRRQLEQRGDVEL 30 (315)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCTTEEE
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCcCEEE
Confidence 5899999999999999999998765543
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=94.40 E-value=0.018 Score=50.17 Aligned_cols=82 Identities=15% Similarity=0.209 Sum_probs=50.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.+|+|+| .|.||+++.++|..+ .+++.+....+. .... . .+.. ...+ ++.+..+|++..++|-...
T Consensus 44 k~vgIiG-~G~IG~~va~~l~~f-g~~V~~~d~~~~---~~~~-~---~~~~---~~~l-~~~l~~sDii~~~~plt~~T 110 (197)
T d1j4aa1 44 QVVGVVG-TGHIGQVFMQIMEGF-GAKVITYDIFRN---PELE-K---KGYY---VDSL-DDLYKQADVISLHVPDVPAN 110 (197)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSCC---HHHH-H---TTCB---CSCH-HHHHHHCSEEEECSCCCGGG
T ss_pred CeEEEec-ccccchhHHHhHhhh-cccccccCcccc---cccc-c---ceee---eccc-cccccccccccccCCccccc
Confidence 4799999 999999999999866 467765532111 1000 0 0001 1111 2234678999999884333
Q ss_pred -----HHHHhhCCCCCEEEEc
Q 015441 143 -----QEIIKGLPKSLKIVDL 158 (406)
Q Consensus 143 -----~~~~~~l~~G~~VIDl 158 (406)
++....+..|+.+|-.
T Consensus 111 ~~li~~~~l~~mk~~a~lIN~ 131 (197)
T d1j4aa1 111 VHMINDESIAKMKQDVVIVNV 131 (197)
T ss_dssp TTCBSHHHHHHSCTTEEEEEC
T ss_pred cccccHHHHhhhCCccEEEec
Confidence 4444556788888843
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=94.18 E-value=0.051 Score=46.56 Aligned_cols=80 Identities=14% Similarity=0.229 Sum_probs=50.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc---
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG--- 140 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~--- 140 (406)
.+|+|+| .|.+|+++.++|..+ .+++.+....... .... ......+ ++.+..+|++.+++|-.
T Consensus 45 ~~vgiiG-~G~IG~~va~~l~~f-g~~v~~~d~~~~~--~~~~---------~~~~~~l-~ell~~sDii~i~~plt~~T 110 (188)
T d1sc6a1 45 KKLGIIG-YGHIGTQLGILAESL-GMYVYFYDIENKL--PLGN---------ATQVQHL-SDLLNMSDVVSLHVPENPST 110 (188)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSCCC--CCTT---------CEECSCH-HHHHHHCSEEEECCCSSTTT
T ss_pred eEEEEee-cccchhhhhhhcccc-cceEeeccccccc--hhhh---------hhhhhhH-HHHHhhccceeecccCCcch
Confidence 5799999 999999999998866 4676665422111 0010 0001122 23346789999998833
Q ss_pred ---chHHHHhhCCCCCEEEE
Q 015441 141 ---TTQEIIKGLPKSLKIVD 157 (406)
Q Consensus 141 ---~s~~~~~~l~~G~~VID 157 (406)
+.++..+.+.+|..+|-
T Consensus 111 ~~li~~~~l~~mk~~a~lIN 130 (188)
T d1sc6a1 111 KNMMGAKEISLMKPGSLLIN 130 (188)
T ss_dssp TTCBCHHHHHHSCTTEEEEE
T ss_pred hhhccHHHHhhCCCCCEEEE
Confidence 33566667778889993
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=94.16 E-value=0.012 Score=48.80 Aligned_cols=72 Identities=19% Similarity=0.221 Sum_probs=39.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCC-ceEEEEeccCc---CCccccccc--cCccccCCCcccccCcccCCCCCEEEEcC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPY-FGIKLMTADRK---AGQSIGSVF--PHLISQDLPTMVAVKDADFSNVDAVFCCL 137 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~-~elv~l~s~~~---~G~~i~~v~--p~l~~~~~~~~~~~~~~~~~~vDvVF~al 137 (406)
.||+|+| .|+||..++-.|..+.- -|++.+ +... .|...+..| +.+. .... +..-+.+++.++|+|+.+.
T Consensus 2 kKI~IIG-aG~VG~~~a~~l~~~~~~~elvL~-Di~~~~~~g~~~Dl~~a~~~~~-~~~~-~~~~d~~~l~~adiVVita 77 (146)
T d1hyha1 2 RKIGIIG-LGNVGAAVAHGLIAQGVADDYVFI-DANEAKVKADQIDFQDAMANLE-AHGN-IVINDWAALADADVVISTL 77 (146)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEE-CSSHHHHHHHHHHHHHHGGGSS-SCCE-EEESCGGGGTTCSEEEECC
T ss_pred CeEEEEC-cCHHHHHHHHHHHhcCCCceEEEE-ecccchhhhHHHhhhccccccC-Cccc-eeccCHHHhccccEEEEec
Confidence 5899999 59999999997775443 366654 4221 122111111 1110 0111 1112234567899998887
Q ss_pred CC
Q 015441 138 PH 139 (406)
Q Consensus 138 ~~ 139 (406)
+.
T Consensus 78 G~ 79 (146)
T d1hyha1 78 GN 79 (146)
T ss_dssp SC
T ss_pred cc
Confidence 63
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=94.12 E-value=0.045 Score=47.49 Aligned_cols=82 Identities=16% Similarity=0.273 Sum_probs=50.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.+|+|+| .|.||+++.++|..+ .+++.+.......+. . . .. ....+ ++.+..+|+|.+++|....
T Consensus 46 ktvgIiG-~G~IG~~va~~l~~f-g~~v~~~d~~~~~~~--~---~-----~~-~~~~l-~~l~~~~D~v~~~~plt~~T 111 (199)
T d1dxya1 46 QTVGVMG-TGHIGQVAIKLFKGF-GAKVIAYDPYPMKGD--H---P-----DF-DYVSL-EDLFKQSDVIDLHVPGIEQN 111 (199)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSCCSSC--C---T-----TC-EECCH-HHHHHHCSEEEECCCCCGGG
T ss_pred eeeeeee-ccccccccccccccc-ceeeeccCCccchhh--h---c-----ch-hHHHH-HHHHHhcccceeeecccccc
Confidence 4799999 999999999999876 467765532211110 0 0 00 01111 2234678999999885433
Q ss_pred -----HHHHhhCCCCCEEEEcCC
Q 015441 143 -----QEIIKGLPKSLKIVDLSA 160 (406)
Q Consensus 143 -----~~~~~~l~~G~~VIDlSa 160 (406)
++....++.|+.+| +.|
T Consensus 112 ~~li~~~~l~~mk~~a~lI-N~a 133 (199)
T d1dxya1 112 THIINEAAFNLMKPGAIVI-NTA 133 (199)
T ss_dssp TTSBCHHHHHHSCTTEEEE-ECS
T ss_pred cccccHHHhhccCCceEEE-ecc
Confidence 44555667888888 444
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=94.11 E-value=0.033 Score=48.21 Aligned_cols=84 Identities=12% Similarity=0.149 Sum_probs=49.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.+|+|+| .|.||+++.+.|..+ .+++.+....... ..... ........+ ++.+..+|+|..++|-...
T Consensus 50 ktvgIiG-~G~IG~~va~~l~~f-g~~v~~~d~~~~~--~~~~~------~~~~~~~~l-~~ll~~sD~i~~~~plt~~T 118 (193)
T d1mx3a1 50 ETLGIIG-LGRVGQAVALRAKAF-GFNVLFYDPYLSD--GVERA------LGLQRVSTL-QDLLFHSDCVTLHCGLNEHN 118 (193)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHTT-TCEEEEECTTSCT--THHHH------HTCEECSSH-HHHHHHCSEEEECCCCCTTC
T ss_pred ceEEEec-cccccccceeeeecc-ccceeeccCcccc--cchhh------hccccccch-hhccccCCEEEEeecccccc
Confidence 4799999 999999999999876 4777665432211 11100 001001111 2234678999998884333
Q ss_pred -----HHHHhhCCCCCEEEEc
Q 015441 143 -----QEIIKGLPKSLKIVDL 158 (406)
Q Consensus 143 -----~~~~~~l~~G~~VIDl 158 (406)
++....++.|+.+|-.
T Consensus 119 ~~li~~~~l~~mk~~a~lIN~ 139 (193)
T d1mx3a1 119 HHLINDFTVKQMRQGAFLVNT 139 (193)
T ss_dssp TTSBSHHHHTTSCTTEEEEEC
T ss_pred hhhhhHHHHhccCCCCeEEec
Confidence 3344455678888843
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=94.05 E-value=0.024 Score=46.83 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=24.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCc-eEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYF-GIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~-elv~l~ 95 (406)
.||+|+|| |.||..+.-.|...+-+ |++.+-
T Consensus 2 ~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D 33 (143)
T d1llda1 2 TKLAVIGA-GAVGSTLAFAAAQRGIAREIVLED 33 (143)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEE
Confidence 48999996 99999999888755544 666553
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=93.95 E-value=0.048 Score=43.25 Aligned_cols=81 Identities=20% Similarity=0.304 Sum_probs=52.3
Q ss_pred EEEEECcc---cHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccC-CCCCEEEEcCCCc
Q 015441 65 RIGLLGAS---GYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADF-SNVDAVFCCLPHG 140 (406)
Q Consensus 65 kVaIvGAT---G~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~-~~vDvVF~al~~~ 140 (406)
+|||+||+ +..|..+++-|.++.. ++..++-+. +.+. + ++.+..+ .++ ..+|++++|+|..
T Consensus 3 sIAVvGaS~~~~k~g~~v~~~L~~~g~-~V~pVnP~~---~~i~-------G--~~~y~sl--~~lp~~~D~vvi~vp~~ 67 (116)
T d1y81a1 3 KIALVGASKNPAKYGNIILKDLLSKGF-EVLPVNPNY---DEIE-------G--LKCYRSV--RELPKDVDVIVFVVPPK 67 (116)
T ss_dssp EEEEETCCSCTTSHHHHHHHHHHHTTC-EEEEECTTC---SEET-------T--EECBSSG--GGSCTTCCEEEECSCHH
T ss_pred EEEEEcccCCCCCcHHHHHHHHHHCCC-EEEEEcccc---cccc-------C--ccccccc--hhccccceEEEEEeCHH
Confidence 69999998 7789999998887764 787776322 1111 1 1111111 112 4689999999999
Q ss_pred chHHHHhhC-CCCCE-EEEcCC
Q 015441 141 TTQEIIKGL-PKSLK-IVDLSA 160 (406)
Q Consensus 141 ~s~~~~~~l-~~G~~-VIDlSa 160 (406)
...+.++.+ +.|++ ++-.++
T Consensus 68 ~~~~~l~~~~~~g~k~v~~~~g 89 (116)
T d1y81a1 68 VGLQVAKEAVEAGFKKLWFQPG 89 (116)
T ss_dssp HHHHHHHHHHHTTCCEEEECTT
T ss_pred HHHHHHHHHHhcCCceEEeccc
Confidence 888888764 66764 333344
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=93.94 E-value=0.02 Score=52.78 Aligned_cols=31 Identities=23% Similarity=0.455 Sum_probs=26.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|||.|.||||++|+.|++.|++.. .+++.+.
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g-~~V~~~d 31 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNG-HDVIILD 31 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc-CEEEEEE
Confidence 579999999999999999998764 5776663
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.90 E-value=0.02 Score=52.75 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=25.9
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEE
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l 94 (406)
|..||.|.||||++|+.|++.|++.. .+++.+
T Consensus 1 M~kKILITG~tGfIGs~lv~~Ll~~g-~~V~~l 32 (346)
T d1ek6a_ 1 MAEKVLVTGGAGYIGSHTVLELLEAG-YLPVVI 32 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTT-CCEEEE
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCc-CEEEEE
Confidence 44589999999999999999998653 466665
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.78 E-value=0.064 Score=45.37 Aligned_cols=83 Identities=14% Similarity=0.237 Sum_probs=45.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC--ccc--cccccCccccCC-Ccccc-cC-cccCCCCCEEEEc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG--QSI--GSVFPHLISQDL-PTMVA-VK-DADFSNVDAVFCC 136 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G--~~i--~~v~p~l~~~~~-~~~~~-~~-~~~~~~vDvVF~a 136 (406)
|||+|+| +|..|..|...|.+.- .++.....+.+.. +.+ ...++.+..... ..+.. .+ .+...++|+|++|
T Consensus 1 MkI~ViG-aG~~GtalA~~la~~g-~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~a 78 (180)
T d1txga2 1 MIVSILG-AGAMGSALSVPLVDNG-NEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLG 78 (180)
T ss_dssp CEEEEES-CCHHHHHHHHHHHHHC-CEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEEC
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCC-CEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcc
Confidence 5899999 8999999999998532 2444443211110 000 011222211100 00111 11 2234789999999
Q ss_pred CCCcchHHHHhh
Q 015441 137 LPHGTTQEIIKG 148 (406)
Q Consensus 137 l~~~~s~~~~~~ 148 (406)
+|...-++.+..
T Consensus 79 vps~~~~~~~~~ 90 (180)
T d1txga2 79 VSTDGVLPVMSR 90 (180)
T ss_dssp SCGGGHHHHHHH
T ss_pred cchhhhHHHHHh
Confidence 998877776654
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=93.77 E-value=0.019 Score=53.91 Aligned_cols=32 Identities=25% Similarity=0.538 Sum_probs=26.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
|||.|.|||||+|+.|++.|+++...+++.+-
T Consensus 3 MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D 34 (383)
T d1gy8a_ 3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVD 34 (383)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEe
Confidence 38999999999999999988765566887763
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=93.76 E-value=0.032 Score=47.02 Aligned_cols=94 Identities=11% Similarity=0.118 Sum_probs=52.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccC-ccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPH-LISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~-l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
.+|+||| .|..|..+.+.|.++- +++... +++. .-+.+....-. ............ .+...++|++++|+++..
T Consensus 3 ~nIg~IG-lG~MG~~mA~~L~~~G-~~V~v~-dr~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~ii~~~~~~~ 78 (176)
T d2pgda2 3 ADIALIG-LAVMGQNLILNMNDHG-FVVCAF-NRTVSKVDDFLANEAKGTKVLGAHSLEEM-VSKLKKPRRIILLVKAGQ 78 (176)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTT-CCEEEE-CSSTHHHHHHHHTTTTTSSCEECSSHHHH-HHHBCSSCEEEECSCTTH
T ss_pred CcEEEEe-EhHHHHHHHHHHHHCC-CeEEEE-cCCHHHHHHHHHhccccccccchhhhhhh-hhhhcccceEEEecCchH
Confidence 5799999 9999999999998753 466544 4322 11111100000 000000001111 122357899999998875
Q ss_pred hHH-----HHhhCCCCCEEEEcCCc
Q 015441 142 TQE-----IIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 142 s~~-----~~~~l~~G~~VIDlSa~ 161 (406)
... +.+.+..|..|||+|.-
T Consensus 79 ~v~~v~~~l~~~~~~g~iiid~sT~ 103 (176)
T d2pgda2 79 AVDNFIEKLVPLLDIGDIIIDGGNS 103 (176)
T ss_dssp HHHHHHHHHHHHCCTTCEEEECSCC
T ss_pred HHHHHHHHHHhccccCcEEEecCcc
Confidence 522 23345678999999874
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=93.72 E-value=0.026 Score=52.16 Aligned_cols=32 Identities=25% Similarity=0.459 Sum_probs=27.4
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+.+|+|+||||++|+.|++.|+++. .++++++
T Consensus 3 kktIlVtGatG~iG~~lv~~Ll~~G-~~V~~l~ 34 (350)
T d1xgka_ 3 KKTIAVVGATGRQGASLIRVAAAVG-HHVRAQV 34 (350)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTT-CCEEEEE
T ss_pred CCEEEEECCChHHHHHHHHHHHhCC-CeEEEEE
Confidence 4679999999999999999998763 5777776
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=93.69 E-value=0.027 Score=46.95 Aligned_cols=35 Identities=17% Similarity=0.343 Sum_probs=28.0
Q ss_pred ccCCccEEEEECcccHHHHHHHHHHHcCCCceEEEE
Q 015441 59 KSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (406)
Q Consensus 59 ~~~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l 94 (406)
.+.++.||+|+|| |.||+.+.-+|...+..|++.+
T Consensus 3 ~~~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~ 37 (154)
T d1pzga1 3 LVQRRKKVAMIGS-GMIGGTMGYLCALRELADVVLY 37 (154)
T ss_dssp CCSCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEE
T ss_pred cccCCCcEEEECC-CHHHHHHHHHHHhCCCceEEEE
Confidence 3456789999996 9999999988876666687655
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=93.62 E-value=0.031 Score=51.58 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=26.6
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
-.+|.|.|||||+|..|++.|+++ ..+++++.
T Consensus 11 gk~VlVTG~sGfIGs~l~~~Ll~~-G~~V~~~v 42 (342)
T d1y1pa1 11 GSLVLVTGANGFVASHVVEQLLEH-GYKVRGTA 42 (342)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred cCEEEEECCCCHHHHHHHHHHHHC-cCEEEEEe
Confidence 358999999999999999988876 46777664
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.45 E-value=0.04 Score=49.85 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=26.8
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEecc
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTAD 97 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~ 97 (406)
||.|.||||++|+.|++.|++. ..++..+...
T Consensus 2 ~vLItG~tGfiG~~l~~~Ll~~-g~~V~~~~r~ 33 (321)
T d1rpna_ 2 SALVTGITGQDGAYLAKLLLEK-GYRVHGLVAR 33 (321)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred EEEEECCCCHHHHHHHHHHHHC-cCEEEEEECC
Confidence 7999999999999999999865 4678777543
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=93.17 E-value=0.053 Score=46.45 Aligned_cols=84 Identities=18% Similarity=0.251 Sum_probs=49.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.+|+|+| .|.+|+++++.|..+ .+++.+.. +.......... ........+ ++.+.++|+|+.++|-...
T Consensus 45 ~~vgiiG-~G~IG~~va~~l~~f-g~~v~~~d-~~~~~~~~~~~------~~~~~~~~l-~~~l~~sD~v~~~~plt~~T 114 (188)
T d2naca1 45 MHVGTVA-AGRIGLAVLRRLAPF-DVHLHYTD-RHRLPESVEKE------LNLTWHATR-EDMYPVCDVVTLNCPLHPET 114 (188)
T ss_dssp CEEEEEC-CSHHHHHHHHHHGGG-TCEEEEEC-SSCCCHHHHHH------HTCEECSSH-HHHGGGCSEEEECSCCCTTT
T ss_pred cceeecc-ccccchhhhhhhhcc-CceEEEEe-ecccccccccc------ccccccCCH-HHHHHhccchhhcccccccc
Confidence 5899999 999999999999865 34554443 22211111100 001001111 2335689999998884433
Q ss_pred -----HHHHhhCCCCCEEEE
Q 015441 143 -----QEIIKGLPKSLKIVD 157 (406)
Q Consensus 143 -----~~~~~~l~~G~~VID 157 (406)
.+....++.|..+|-
T Consensus 115 ~~li~~~~l~~mk~ga~lIN 134 (188)
T d2naca1 115 EHMINDETLKLFKRGAYIVN 134 (188)
T ss_dssp TTCBSHHHHTTSCTTEEEEE
T ss_pred hhhhHHHHHHhCCCCCEEEe
Confidence 444455677888883
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=92.80 E-value=0.015 Score=50.15 Aligned_cols=97 Identities=9% Similarity=0.154 Sum_probs=52.2
Q ss_pred ccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-Ccccccc--ccC-ccccCCCc-ccc-cC-cccCCCCCEEEE
Q 015441 63 QVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSV--FPH-LISQDLPT-MVA-VK-DADFSNVDAVFC 135 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v--~p~-l~~~~~~~-~~~-~~-~~~~~~vDvVF~ 135 (406)
|.||+|+| +|..|..|..+|.+.- .++... +++.. -+.+... ++. +.+..++. +.. .+ .+.+.++|++|+
T Consensus 7 m~KI~ViG-aG~wGtAlA~~La~~g-~~V~l~-~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iii 83 (189)
T d1n1ea2 7 LNKAVVFG-SGAFGTALAMVLSKKC-REVCVW-HMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILF 83 (189)
T ss_dssp EEEEEEEC-CSHHHHHHHHHHHTTE-EEEEEE-CSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEE
T ss_pred eceEEEEC-CCHHHHHHHHHHHHcC-CeEEEE-EecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEE
Confidence 45899999 9999999999998542 244443 33211 0111110 011 11111111 111 11 223468999999
Q ss_pred cCCCcchHHHHhhC---------CCCCEEEEcCCcc
Q 015441 136 CLPHGTTQEIIKGL---------PKSLKIVDLSADF 162 (406)
Q Consensus 136 al~~~~s~~~~~~l---------~~G~~VIDlSa~f 162 (406)
|+|+..-+++++.+ ..+..+|.++--+
T Consensus 84 avPs~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGi 119 (189)
T d1n1ea2 84 VIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGI 119 (189)
T ss_dssp CSCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSC
T ss_pred cCcHHHHHHHHHHHHhhhhhhhccCCcEEEEEECCC
Confidence 99987666665432 2355677665433
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=92.65 E-value=0.043 Score=49.52 Aligned_cols=30 Identities=10% Similarity=0.383 Sum_probs=25.7
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
||.|.||||++|+.|++.|.+. ..+++.+-
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~-g~~V~~id 31 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQ-GIDLIVFD 31 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred EEEEECCCcHHHHHHHHHHHHC-cCEEEEEE
Confidence 7999999999999999999876 35777763
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=92.55 E-value=0.17 Score=43.40 Aligned_cols=95 Identities=18% Similarity=0.211 Sum_probs=57.6
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-CccccccccCccccCCC---ccc--------------ccC--
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-GQSIGSVFPHLISQDLP---TMV--------------AVK-- 123 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-G~~i~~v~p~l~~~~~~---~~~--------------~~~-- 123 (406)
-||.|+| .|-+|.+-++.....- .++..+ +.+.. -+.+.+.++.|...... ..+ ...
T Consensus 30 a~VvViG-aGvaG~~Aa~~A~~lG-A~V~v~-D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~ 106 (183)
T d1l7da1 30 ARVLVFG-VGVAGLQAIATAKRLG-AVVMAT-DVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE 106 (183)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTT-CEEEEE-CSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred cEEEEEc-CcHHHHHHHHHHHHcC-CEEEEE-eccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence 5899999 8999999998776653 344444 43322 23344433332210000 000 000
Q ss_pred --cccCCCCCEEEEc-------CCCcchHHHHhhCCCCCEEEEcCCc
Q 015441 124 --DADFSNVDAVFCC-------LPHGTTQEIIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 124 --~~~~~~vDvVF~a-------l~~~~s~~~~~~l~~G~~VIDlSa~ 161 (406)
.+.+.++|+|+.+ .|.-++++.++..+.|.++||++.|
T Consensus 107 ~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvaid 153 (183)
T d1l7da1 107 AVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVE 153 (183)
T ss_dssp HHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGG
T ss_pred HHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEeec
Confidence 0113589999987 5566778888888899999999987
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.53 E-value=0.073 Score=43.55 Aligned_cols=84 Identities=19% Similarity=0.270 Sum_probs=53.9
Q ss_pred cEEEEECcc---cHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccC-CCCCEEEEcCCC
Q 015441 64 VRIGLLGAS---GYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADF-SNVDAVFCCLPH 139 (406)
Q Consensus 64 ikVaIvGAT---G~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~-~~vDvVF~al~~ 139 (406)
.+|||+||+ +..|..+++-|.++. ++++.++-+. .++ .|. +.+..+ .++ ..+|+|+++.|.
T Consensus 20 ksIAVVGaS~~~~~~g~~v~~~L~~~g-~~v~pVnP~~------~~i----~G~--~~~~sl--~dlp~~iD~v~i~vp~ 84 (139)
T d2d59a1 20 KKIALVGASPKPERDANIVMKYLLEHG-YDVYPVNPKY------EEV----LGR--KCYPSV--LDIPDKIEVVDLFVKP 84 (139)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTT-CEEEEECTTC------SEE----TTE--ECBSSG--GGCSSCCSEEEECSCH
T ss_pred CeEEEEeecCCCCCchHHHHHHHHHCC-CEEEEECCcc------ccc----CCC--cccccc--cccCccceEEEEEeCH
Confidence 479999999 789999999888764 4787776432 111 111 111121 112 468999999999
Q ss_pred cchHHHHhhC-CCCCEEE-EcCCcc
Q 015441 140 GTTQEIIKGL-PKSLKIV-DLSADF 162 (406)
Q Consensus 140 ~~s~~~~~~l-~~G~~VI-DlSa~f 162 (406)
....++++.+ +.|+++| -.++.|
T Consensus 85 ~~~~~~~~e~~~~g~k~v~~~~G~~ 109 (139)
T d2d59a1 85 KLTMEYVEQAIKKGAKVVWFQYNTY 109 (139)
T ss_dssp HHHHHHHHHHHHHTCSEEEECTTCC
T ss_pred HHHHHHHHHHHHhCCCEEEEecccc
Confidence 8888888764 5566433 244443
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=92.39 E-value=0.062 Score=46.32 Aligned_cols=85 Identities=18% Similarity=0.228 Sum_probs=49.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.+|+|+| .|.+|+++.++|..+. +++........ ....... ..... ...+ ++.+..+|+|..++|-...
T Consensus 48 ~tvgIiG-~G~IG~~va~~l~~fg-~~v~~~d~~~~-~~~~~~~---~~~~~---~~~l-~~ll~~sD~v~l~~plt~~T 117 (191)
T d1gdha1 48 KTLGIYG-FGSIGQALAKRAQGFD-MDIDYFDTHRA-SSSDEAS---YQATF---HDSL-DSLLSVSQFFSLNAPSTPET 117 (191)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHTTT-CEEEEECSSCC-CHHHHHH---HTCEE---CSSH-HHHHHHCSEEEECCCCCTTT
T ss_pred cceEEee-cccchHHHHHHHHhhc-ccccccccccc-ccchhhc---ccccc---cCCH-HHHHhhCCeEEecCCCCchH
Confidence 5799999 9999999999998763 56655432211 1110000 00000 0111 2234678999999884332
Q ss_pred -----HHHHhhCCCCCEEEEc
Q 015441 143 -----QEIIKGLPKSLKIVDL 158 (406)
Q Consensus 143 -----~~~~~~l~~G~~VIDl 158 (406)
++....++.|..+|-.
T Consensus 118 ~~li~~~~l~~mk~~a~lIN~ 138 (191)
T d1gdha1 118 RYFFNKATIKSLPQGAIVVNT 138 (191)
T ss_dssp TTCBSHHHHTTSCTTEEEEEC
T ss_pred hheecHHHhhCcCCccEEEec
Confidence 4444556778888833
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.18 E-value=0.062 Score=45.92 Aligned_cols=83 Identities=14% Similarity=0.247 Sum_probs=49.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch-
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT- 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s- 142 (406)
.+++|+| .|.+|+++.+.+..+. +++.+............ . ... ...+ ++.+..+|+|.+++|-...
T Consensus 45 k~vgiiG-~G~IG~~va~~~~~fg-~~v~~~d~~~~~~~~~~------~--~~~-~~~l-~ell~~sDiv~~~~Plt~~T 112 (184)
T d1ygya1 45 KTVGVVG-LGRIGQLVAQRIAAFG-AYVVAYDPYVSPARAAQ------L--GIE-LLSL-DDLLARADFISVHLPKTPET 112 (184)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHTTT-CEEEEECTTSCHHHHHH------H--TCE-ECCH-HHHHHHCSEEEECCCCSTTT
T ss_pred eeeeecc-ccchhHHHHHHhhhcc-ceEEeecCCCChhHHhh------c--Cce-eccH-HHHHhhCCEEEEcCCCCchh
Confidence 5799999 9999999999998764 66655532111100000 0 000 1112 2335689999999884433
Q ss_pred -----HHHHhhCCCCCEEEEc
Q 015441 143 -----QEIIKGLPKSLKIVDL 158 (406)
Q Consensus 143 -----~~~~~~l~~G~~VIDl 158 (406)
++....++.|+.+|-.
T Consensus 113 ~~lin~~~l~~mk~~a~lIN~ 133 (184)
T d1ygya1 113 AGLIDKEALAKTKPGVIIVNA 133 (184)
T ss_dssp TTCBCHHHHTTSCTTEEEEEC
T ss_pred hhhhhHHHHhhhCCCceEEEe
Confidence 3444455678888833
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=92.01 E-value=0.13 Score=39.82 Aligned_cols=84 Identities=10% Similarity=0.029 Sum_probs=49.8
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcc-cccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTM-VAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~-~~~~~~~~~~vDvVF~al~~~~s 142 (406)
.||.|+| .|.+|.+-++.|++.. .+++.++...+. .+... .....+... ...++.++.++++|+.|++....
T Consensus 13 k~vlVvG-~G~va~~ka~~ll~~g-a~v~v~~~~~~~--~~~~~---~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~~ 85 (113)
T d1pjqa1 13 RDCLIVG-GGDVAERKARLLLEAG-ARLTVNALTFIP--QFTVW---ANEGMLTLVEGPFDETLLDSCWLAIAATDDDTV 85 (113)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTT-BEEEEEESSCCH--HHHHH---HTTTSCEEEESSCCGGGGTTCSEEEECCSCHHH
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCC-CeEEEEeccCCh--HHHHH---HhcCCceeeccCCCHHHhCCCcEEeecCCCHHH
Confidence 5899999 9999999999998763 566666532221 11100 000011111 12335567889999999876544
Q ss_pred -HHHHhhC-CCCCE
Q 015441 143 -QEIIKGL-PKSLK 154 (406)
Q Consensus 143 -~~~~~~l-~~G~~ 154 (406)
.++.+.. ++|+.
T Consensus 86 n~~i~~~a~~~~il 99 (113)
T d1pjqa1 86 NQRVSDAAESRRIF 99 (113)
T ss_dssp HHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHcCCE
Confidence 4555544 45654
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=91.89 E-value=0.062 Score=47.53 Aligned_cols=29 Identities=28% Similarity=0.509 Sum_probs=25.3
Q ss_pred EEEECcccHHHHHHHHHHHcCCCceEEEE
Q 015441 66 IGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (406)
Q Consensus 66 VaIvGATG~vG~eLlrlL~~hp~~elv~l 94 (406)
|.|.||||++|+.|++.|.+....+++.+
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~ 30 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGITDILVV 30 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCCCEEEE
T ss_pred EEEecCccHHHHHHHHHHHhCCCCeEEEE
Confidence 78999999999999999998766677776
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.87 E-value=0.068 Score=48.96 Aligned_cols=33 Identities=12% Similarity=0.216 Sum_probs=26.4
Q ss_pred CccEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 62 KQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 62 ~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
++.+|.|.||||++|+.|++.|.+.. .++..+.
T Consensus 15 ~~k~iLVTG~tGfIGs~lv~~L~~~g-~~V~~~d 47 (341)
T d1sb8a_ 15 QPKVWLITGVAGFIGSNLLETLLKLD-QKVVGLD 47 (341)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCc-CEEEEEE
Confidence 34579999999999999999998654 4676653
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=91.58 E-value=0.091 Score=47.96 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=26.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.||.|.||||++|+.|++.|.+.. .++..+.
T Consensus 9 KkILVTG~tGfIGs~lv~~Ll~~g-~~V~~~~ 39 (356)
T d1rkxa_ 9 KRVFVTGHTGFKGGWLSLWLQTMG-ATVKGYS 39 (356)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEE
Confidence 689999999999999999998764 4666554
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=91.50 E-value=0.069 Score=49.95 Aligned_cols=30 Identities=20% Similarity=0.472 Sum_probs=25.3
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEE
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l 94 (406)
+||.|.||||++|..|++.|++.. .+++.+
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~~g-~~V~~i 31 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSKKN-YEVCIV 31 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCc-CEEEEE
Confidence 589999999999999999998643 567666
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=91.38 E-value=0.049 Score=49.64 Aligned_cols=22 Identities=32% Similarity=0.646 Sum_probs=20.1
Q ss_pred cEEEEECcccHHHHHHHHHHHc
Q 015441 64 VRIGLLGASGYTGAEIVRLLAN 85 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~ 85 (406)
|||.|.||||++|+.|++.|.+
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~ 22 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLA 22 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHH
Confidence 5899999999999999998874
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=91.13 E-value=0.09 Score=47.65 Aligned_cols=32 Identities=13% Similarity=0.206 Sum_probs=26.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEec
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTA 96 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s 96 (406)
.++.|.||||++|+.|++.|++. ..+++++..
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~-g~~V~~~~r 33 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGK-GYEVHGLIR 33 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred CEEEEeCCccHHHHHHHHHHHHC-cCEEEEEEC
Confidence 47889999999999999999875 467777753
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.88 E-value=0.096 Score=47.71 Aligned_cols=31 Identities=13% Similarity=0.311 Sum_probs=25.9
Q ss_pred EE-EEECcccHHHHHHHHHHHcCCCceEEEEec
Q 015441 65 RI-GLLGASGYTGAEIVRLLANHPYFGIKLMTA 96 (406)
Q Consensus 65 kV-aIvGATG~vG~eLlrlL~~hp~~elv~l~s 96 (406)
|| .|.||||++|+.|++.|.+. ..+++++.-
T Consensus 2 KI~LVTG~tGfIG~~l~~~Ll~~-g~~V~~i~r 33 (347)
T d1t2aa_ 2 NVALITGITGQDGSYLAEFLLEK-GYEVHGIVR 33 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred CEEEEecCCcHHHHHHHHHHHHC-cCEEEEEEC
Confidence 78 68899999999999999875 467877753
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.65 E-value=0.18 Score=42.43 Aligned_cols=87 Identities=8% Similarity=0.034 Sum_probs=53.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCC--cc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPH--GT 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~--~~ 141 (406)
.+|+|+| +|.+|+.+.+.|..+- .++. +.+. ..-+.+.... .+... ..+ ++....+|+++.|++. -+
T Consensus 25 k~v~V~G-yG~iG~g~A~~~rg~G-~~V~-v~e~-dp~~al~A~~---dG~~v---~~~-~~a~~~adivvtaTGn~~vI 93 (163)
T d1li4a1 25 KVAVVAG-YGDVGKGCAQALRGFG-ARVI-ITEI-DPINALQAAM---EGYEV---TTM-DEACQEGNIFVTTTGCIDII 93 (163)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTT-CEEE-EECS-CHHHHHHHHH---TTCEE---CCH-HHHTTTCSEEEECSSCSCSB
T ss_pred CEEEEec-cccccHHHHHHHHhCC-CeeE-eeec-ccchhHHhhc---CceEe---eeh-hhhhhhccEEEecCCCccch
Confidence 4799999 9999999999998764 4443 2222 1111111111 11111 111 2334578999999995 46
Q ss_pred hHHHHhhCCCCCEEEEcCCcc
Q 015441 142 TQEIIKGLPKSLKIVDLSADF 162 (406)
Q Consensus 142 s~~~~~~l~~G~~VIDlSa~f 162 (406)
..+..+.++.|+.+. +.+.|
T Consensus 94 ~~eh~~~MKdgaIL~-N~Ghf 113 (163)
T d1li4a1 94 LGRHFEQMKDDAIVC-NIGHF 113 (163)
T ss_dssp CHHHHTTCCTTEEEE-ECSSS
T ss_pred hHHHHHhccCCeEEE-Eeccc
Confidence 677777788888877 66666
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=90.34 E-value=0.095 Score=43.02 Aligned_cols=85 Identities=16% Similarity=0.204 Sum_probs=48.5
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchHH
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQE 144 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~~ 144 (406)
||+++| .|..|..+.+.|.+.- ..+.....+..-.....- . + . . ....+...++|++|.|++......
T Consensus 2 kIg~IG-lG~MG~~ma~~L~~~g--~~~~~~~~~~~~~~~~~~---~-~-~---~-~~~~~~~~~~~~~i~~~~~~~~v~ 69 (156)
T d2cvza2 2 KVAFIG-LGAMGYPMAGHLARRF--PTLVWNRTFEKALRHQEE---F-G-S---E-AVPLERVAEARVIFTCLPTTREVY 69 (156)
T ss_dssp CEEEEC-CSTTHHHHHHHHHTTS--CEEEECSSTHHHHHHHHH---H-C-C---E-ECCGGGGGGCSEEEECCSSHHHHH
T ss_pred eEEEEe-HHHHHHHHHHHHHhCC--CEEEEeCCHHHHHHHHHH---c-C-C---c-ccccccccceeEEEecccchhhhh
Confidence 799999 8999999999998643 233333222111111100 0 0 0 0 111223357899999998765533
Q ss_pred HH-h----hCCCCCEEEEcCCc
Q 015441 145 II-K----GLPKSLKIVDLSAD 161 (406)
Q Consensus 145 ~~-~----~l~~G~~VIDlSa~ 161 (406)
.. . .+.+|..+||+|..
T Consensus 70 ~~~~~l~~~~~~~~~iid~sT~ 91 (156)
T d2cvza2 70 EVAEALYPYLREGTYWVDATSG 91 (156)
T ss_dssp HHHHHHTTTCCTTEEEEECSCC
T ss_pred hhhccccccccccccccccccC
Confidence 22 1 23457889998874
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=90.08 E-value=0.093 Score=41.78 Aligned_cols=77 Identities=16% Similarity=0.237 Sum_probs=43.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccc--cCccccCCCcccccCcccCCCCCEEEEcCCCcc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVF--PHLISQDLPTMVAVKDADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~--p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~ 141 (406)
|||.|+| .|.+|+.|++.|.+.. .+++.+-.+...-+.+..-+ ..+.+ +......+....+.++|.++.+++...
T Consensus 1 M~IvI~G-~G~~G~~la~~L~~~g-~~v~vid~d~~~~~~~~~~~~~~vi~G-d~~~~~~l~~~~i~~a~~vv~~t~~d~ 77 (132)
T d1lssa_ 1 MYIIIAG-IGRVGYTLAKSLSEKG-HDIVLIDIDKDICKKASAEIDALVING-DCTKIKTLEDAGIEDADMYIAVTGKEE 77 (132)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHCSSEEEES-CTTSHHHHHHTTTTTCSEEEECCSCHH
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCC-CCcceecCChhhhhhhhhhhhhhhccC-cccchhhhhhcChhhhhhhcccCCcHH
Confidence 5899999 5999999999998653 56666643221111111100 00111 111111122233568899999998875
Q ss_pred hH
Q 015441 142 TQ 143 (406)
Q Consensus 142 s~ 143 (406)
..
T Consensus 78 ~N 79 (132)
T d1lssa_ 78 VN 79 (132)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=89.90 E-value=0.12 Score=47.80 Aligned_cols=30 Identities=13% Similarity=0.270 Sum_probs=24.3
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
+|.|.||||++|+.|++.|++. ..+++++.
T Consensus 3 ~vLITGatGfiGs~lv~~Ll~~-g~~V~~~~ 32 (357)
T d1db3a_ 3 VALITGVTGQDGSYLAEFLLEK-GYEVHGIK 32 (357)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT-TCEEEEEC
T ss_pred EEEEeCCCcHHHHHHHHHHHHC-cCEEEEEE
Confidence 4569999999999999999875 45776664
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=89.73 E-value=0.15 Score=42.51 Aligned_cols=95 Identities=15% Similarity=0.226 Sum_probs=49.4
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccCcccc-CCCcccccC--cccCCCCCEEEEcCCC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQ-DLPTMVAVK--DADFSNVDAVFCCLPH 139 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~l~~~-~~~~~~~~~--~~~~~~vDvVF~al~~ 139 (406)
|||+||| .|..|..+++.|.++- +++.. .++.. .-+++.+.+...... ........+ .......+.++.+++.
T Consensus 2 MkIGvIG-lG~MG~~ma~~L~~~G-~~V~~-~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (178)
T d1pgja2 2 MDVGVVG-LGVMGANLALNIAEKG-FKVAV-FNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQA 78 (178)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTT-CCEEE-ECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCC
T ss_pred CEEEEEe-ehHHHHHHHHHHHHCC-CeEEE-EECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecC
Confidence 5899999 9999999999998653 45543 34321 101111111000000 000000000 0112456777777776
Q ss_pred cchHH-----HHhhCCCCCEEEEcCCc
Q 015441 140 GTTQE-----IIKGLPKSLKIVDLSAD 161 (406)
Q Consensus 140 ~~s~~-----~~~~l~~G~~VIDlSa~ 161 (406)
..... ....+..|..+||.|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~iii~~st~ 105 (178)
T d1pgja2 79 GAATDSTIEQLKKVFEKGDILVDTGNA 105 (178)
T ss_dssp SHHHHHHHHHHHHHCCTTCEEEECCCC
T ss_pred cchhhhhhhhhhhhccccceecccCcc
Confidence 55432 22345678889998875
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.31 E-value=0.16 Score=43.40 Aligned_cols=102 Identities=15% Similarity=0.256 Sum_probs=56.2
Q ss_pred Ccc-EEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC-----CccccccccCcc--cc--------C-----CCccc
Q 015441 62 KQV-RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA-----GQSIGSVFPHLI--SQ--------D-----LPTMV 120 (406)
Q Consensus 62 ~~i-kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~-----G~~i~~v~p~l~--~~--------~-----~~~~~ 120 (406)
||+ ||+|+| +|..|+.+..+++.+- ++++.+ +.... -+.+......+. +. + +..+.
T Consensus 2 ~~IkkvaViG-aG~mG~~iA~~~a~~G-~~V~l~-D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~ 78 (192)
T d1f0ya2 2 IIVKHVTVIG-GGLMGAGIAQVAAATG-HTVVLV-DQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIA 78 (192)
T ss_dssp CCCCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEE-CSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEE
T ss_pred ceeEEEEEEC-cCHHHHHHHHHHHhCC-CcEEEE-ECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhcc
Confidence 344 799999 6999999999888753 565544 32211 011111100000 00 0 00011
Q ss_pred c-cC-cccCCCCCEEEEcCCCcchHH--HHhhC----CCCCEEEEcCCcccCCC
Q 015441 121 A-VK-DADFSNVDAVFCCLPHGTTQE--IIKGL----PKSLKIVDLSADFRLRD 166 (406)
Q Consensus 121 ~-~~-~~~~~~vDvVF~al~~~~s~~--~~~~l----~~G~~VIDlSa~fRl~~ 166 (406)
. .+ .+.+.++|+|+.|.+.....+ +...+ ..++.+-.+++.+....
T Consensus 79 ~~~d~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~ 132 (192)
T d1f0ya2 79 TSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITS 132 (192)
T ss_dssp EESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHH
T ss_pred ccchhHhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccch
Confidence 1 11 123578999999999876633 33333 45677788888876543
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=89.25 E-value=0.08 Score=45.03 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=26.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEe
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMT 95 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~ 95 (406)
.+|.|.||+|-+|+++.+.|.++. .+++.+.
T Consensus 24 K~vlItGasgGIG~~ia~~la~~G-~~V~~~~ 54 (191)
T d1luaa1 24 KKAVVLAGTGPVGMRSAALLAGEG-AEVVLCG 54 (191)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhhc-cchhhcc
Confidence 589999999999999999999875 5665554
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=88.89 E-value=0.16 Score=47.07 Aligned_cols=92 Identities=13% Similarity=0.111 Sum_probs=52.1
Q ss_pred ccEEEEECcccHHHHHHHHHHHc-CCCceEEEEeccCcCC-ccccccccCccccCCCcccccCcccCCCCCEEEEcCCCc
Q 015441 63 QVRIGLLGASGYTGAEIVRLLAN-HPYFGIKLMTADRKAG-QSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHG 140 (406)
Q Consensus 63 ~ikVaIvGATG~vG~eLlrlL~~-hp~~elv~l~s~~~~G-~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~ 140 (406)
..+++|+| +|..++.-++.|.. +| ++-+.+.+++... +.+.. .+....+... ....+...++|+|++||+..
T Consensus 125 ~~~l~iiG-aG~QA~~~~~al~~~~~-i~~i~v~~r~~e~~~~~~~---~~~~~~~~~~-~~~~~a~~~aDiV~taT~s~ 198 (320)
T d1omoa_ 125 SSVFGFIG-CGTQAYFQLEALRRVFD-IGEVKAYDVREKAAKKFVS---YCEDRGISAS-VQPAEEASRCDVLVTTTPSR 198 (320)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHHSC-CCEEEEECSSHHHHHHHHH---HHHHTTCCEE-ECCHHHHTSSSEEEECCCCS
T ss_pred ccEEEEec-CcccHHHHHHHHHHHhh-hhhcccccCCHHHHHHHHH---HHHhcCCccc-cchhhhhccccEEEEeccCc
Confidence 35799999 99999999998875 66 5545555544211 11111 0111111111 11123346899999999864
Q ss_pred chHHHHhhCCCCCEEEEcCC
Q 015441 141 TTQEIIKGLPKSLKIVDLSA 160 (406)
Q Consensus 141 ~s~~~~~~l~~G~~VIDlSa 160 (406)
.----...++.|..|+-.++
T Consensus 199 ~P~~~~~~l~~G~hv~~iGs 218 (320)
T d1omoa_ 199 KPVVKAEWVEEGTHINAIGA 218 (320)
T ss_dssp SCCBCGGGCCTTCEEEECSC
T ss_pred ccccchhhcCCCCeEeecCC
Confidence 33111134677888775554
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=88.77 E-value=0.099 Score=41.41 Aligned_cols=76 Identities=13% Similarity=0.188 Sum_probs=39.5
Q ss_pred EEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccc-cccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 65 RIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGS-VFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 65 kVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~-v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
++.|+| .|.+|+.+.+.|.... .+++.+-.+...=+.+.. .++.+.+ +......+....+.++|.||.+++.....
T Consensus 2 ~~iIiG-~G~~G~~la~~L~~~g-~~vvvid~d~~~~~~~~~~~~~~~~g-d~~~~~~l~~a~i~~a~~vi~~~~~~~~~ 78 (134)
T d2hmva1 2 QFAVIG-LGRFGGSIVKELHRMG-HEVLAVDINEEKVNAYASYATHAVIA-NATEENELLSLGIRNFEYVIVAIGANIQA 78 (134)
T ss_dssp CEEEEC-CSHHHHHHHHHHHHTT-CCCEEEESCHHHHHHTTTTCSEEEEC-CTTCTTHHHHHTGGGCSEEEECCCSCHHH
T ss_pred EEEEEC-CCHHHHHHHHHHHHCC-CeEEEecCcHHHHHHHHHhCCcceee-ecccchhhhccCCccccEEEEEcCchHHh
Confidence 689999 6999999999998542 345555322111000110 0101111 11101111122346789999999876443
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=88.08 E-value=0.28 Score=39.71 Aligned_cols=33 Identities=30% Similarity=0.434 Sum_probs=25.7
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADR 98 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~ 98 (406)
|||+|+|++|-+|+.|.+.|++.- .+++.. +|+
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G-~~V~l~-~R~ 33 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLG-HEIVVG-SRR 33 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTT-CEEEEE-ESS
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCC-CEEEEE-ECC
Confidence 589999889999999999999753 455544 443
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=86.53 E-value=0.36 Score=39.98 Aligned_cols=90 Identities=14% Similarity=0.250 Sum_probs=49.9
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCc-CCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcch
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRK-AGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTT 142 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~-~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s 142 (406)
.+|.|+| +|=+++.++-.|.+.. .+++ +..|.. ..+.+...+.... .+. ....++.....+|+++-|+|.+..
T Consensus 19 k~vlIlG-aGGaarai~~al~~~g-~~i~-I~nRt~~ka~~l~~~~~~~~--~~~-~~~~~~~~~~~~dliIN~Tp~G~~ 92 (170)
T d1nyta1 19 LRILLIG-AGGASRGVLLPLLSLD-CAVT-ITNRTVSRAEELAKLFAHTG--SIQ-ALSMDELEGHEFDLIINATSSGIS 92 (170)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTT-CEEE-EECSSHHHHHHHHHHTGGGS--SEE-ECCSGGGTTCCCSEEEECCSCGGG
T ss_pred CEEEEEC-CcHHHHHHHHHhcccc-eEEE-eccchHHHHHHHHHHHhhcc--ccc-ccccccccccccceeecccccCcc
Confidence 5799999 6777999999998765 4654 444432 1222222221111 110 111112223578999999998876
Q ss_pred HHHHh----hCCCCCEEEEcC
Q 015441 143 QEIIK----GLPKSLKIVDLS 159 (406)
Q Consensus 143 ~~~~~----~l~~G~~VIDlS 159 (406)
.+..+ .+..+..|+|+-
T Consensus 93 ~~~~~~~~~~~~~~~~v~D~v 113 (170)
T d1nyta1 93 GDIPAIPSSLIHPGIYCYDMF 113 (170)
T ss_dssp TCCCCCCGGGCCTTCEEEESC
T ss_pred cCCCCCcHHHhccCcEEEEee
Confidence 43221 134566777754
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.21 E-value=0.29 Score=44.62 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=23.7
Q ss_pred EEEECcccHHHHHHHHHHHcCCCceEEEE
Q 015441 66 IGLLGASGYTGAEIVRLLANHPYFGIKLM 94 (406)
Q Consensus 66 VaIvGATG~vG~eLlrlL~~hp~~elv~l 94 (406)
|.|.||||++|+.|++.|++.. .+++.+
T Consensus 4 ILVTGatGfIG~~lv~~Ll~~g-~~V~~~ 31 (347)
T d1z45a2 4 VLVTGGAGYIGSHTVVELIENG-YDCVVA 31 (347)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-CEEEEE
T ss_pred EEEeCCCcHHHHHHHHHHHHCc-CeEEEE
Confidence 8899999999999999988653 567666
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=86.03 E-value=0.26 Score=39.83 Aligned_cols=78 Identities=14% Similarity=0.184 Sum_probs=48.4
Q ss_pred cEEEEECcc---cHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccC-CCCCEEEEcCCC
Q 015441 64 VRIGLLGAS---GYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADF-SNVDAVFCCLPH 139 (406)
Q Consensus 64 ikVaIvGAT---G~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~-~~vDvVF~al~~ 139 (406)
.+|||+||| +..|..+++-|.++. +....+.-. ..+..+. + .+.+..+ .++ ..+|+|++|+|.
T Consensus 14 ksIAVVGaS~~~~k~g~~v~~~L~~~g-~~~~~v~~~-~~~~~i~-------g--~~~~~~l--~~i~~~iD~v~v~~p~ 80 (136)
T d1iuka_ 14 KTIAVLGAHKDPSRPAHYVPRYLREQG-YRVLPVNPR-FQGEELF-------G--EEAVASL--LDLKEPVDILDVFRPP 80 (136)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHTT-CEEEEECGG-GTTSEET-------T--EECBSSG--GGCCSCCSEEEECSCH
T ss_pred CeEEEEeecCCCCCchHHHHHHHhcCC-CCceEEEec-cccceee-------c--eecccch--hhccCCCceEEEeccH
Confidence 469999998 678999999888764 456555432 2232222 1 1111111 122 468999999998
Q ss_pred cchHHHHhhC-CCCCE
Q 015441 140 GTTQEIIKGL-PKSLK 154 (406)
Q Consensus 140 ~~s~~~~~~l-~~G~~ 154 (406)
....++++.+ +.|++
T Consensus 81 ~~v~~~v~~~~~~g~k 96 (136)
T d1iuka_ 81 SALMDHLPEVLALRPG 96 (136)
T ss_dssp HHHTTTHHHHHHHCCS
T ss_pred HHHHHHHHHHHhhCCC
Confidence 8777777654 45654
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=85.67 E-value=0.24 Score=41.95 Aligned_cols=100 Identities=14% Similarity=0.201 Sum_probs=56.2
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcC--C---cccccccc------Cccc---cC-CCcc-cccCcccC
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKA--G---QSIGSVFP------HLIS---QD-LPTM-VAVKDADF 127 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~--G---~~i~~v~p------~l~~---~~-~~~~-~~~~~~~~ 127 (406)
.||+|+| +|.+|+.+.-+++.+ .++++.+ +.... . ..+..... .+.. .. +..+ ...+.+++
T Consensus 5 ~~vaViG-aG~mG~~iA~~~a~~-G~~V~l~-D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (186)
T d1wdka3 5 KQAAVLG-AGIMGGGIAYQSASK-GTPILMK-DINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDF 81 (186)
T ss_dssp SSEEEEC-CHHHHHHHHHHHHHT-TCCEEEE-CSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTG
T ss_pred CEEEEEC-cCHHHHHHHHHHHhC-CCeEEEE-ECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecccccccc
Confidence 4699999 699999999888876 3565544 32211 0 01110000 0000 00 0000 11223456
Q ss_pred CCCCEEEEcCCCcchHH--HHhh----CCCCCEEEEcCCcccCCC
Q 015441 128 SNVDAVFCCLPHGTTQE--IIKG----LPKSLKIVDLSADFRLRD 166 (406)
Q Consensus 128 ~~vDvVF~al~~~~s~~--~~~~----l~~G~~VIDlSa~fRl~~ 166 (406)
.++|+|+.|.+.....+ +.+. ...++.+-.+++.+....
T Consensus 82 ~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~ 126 (186)
T d1wdka3 82 GNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISL 126 (186)
T ss_dssp GGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHH
T ss_pred cccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHHH
Confidence 78999999999887744 3333 345778888888876543
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=85.31 E-value=2.6 Score=35.16 Aligned_cols=41 Identities=17% Similarity=0.304 Sum_probs=30.4
Q ss_pred ccCCccEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCC
Q 015441 59 KSEKQVRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAG 101 (406)
Q Consensus 59 ~~~~~ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G 101 (406)
...+..||+||| .|-.|.+....|..+- .+++.+-.....|
T Consensus 39 ~~~~~k~V~IIG-aGPAGL~AA~~la~~G-~~Vtl~E~~~~~G 79 (179)
T d1ps9a3 39 PAVQKKNLAVVG-AGPAGLAFAINAAARG-HQVTLFDAHSEIG 79 (179)
T ss_dssp SCSSCCEEEEEC-CSHHHHHHHHHHHTTT-CEEEEEESSSSSC
T ss_pred CCCCCcEEEEEC-ccHHHHHHHHHHHhhc-cceEEEeccCccC
Confidence 344457899999 9999999999998764 4676665444455
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.10 E-value=0.15 Score=42.41 Aligned_cols=95 Identities=16% Similarity=0.084 Sum_probs=51.1
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccC--ccccCCCcccccCcc-cCCCCCEEEEcCCCc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPH--LISQDLPTMVAVKDA-DFSNVDAVFCCLPHG 140 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~--l~~~~~~~~~~~~~~-~~~~vDvVF~al~~~ 140 (406)
-+|.|.||+|-+|...++++... ..+++...++.+.-..+.+.... +...+....+.+.+. .-.++|++|+|.+..
T Consensus 27 ~~VlI~ga~g~vG~~~iqla~~~-g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~~g~~ 105 (183)
T d1pqwa_ 27 ERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAGE 105 (183)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCCTH
T ss_pred CEEEEECCCCCcccccchhhccc-cccceeeecccccccccccccccccccCCccCHHHHHHHHhCCCCEEEEEecccch
Confidence 37999999999999999987654 35666665432111111110000 000010001111000 114799999999976
Q ss_pred chHHHHhhCCCCCEEEEcC
Q 015441 141 TTQEIIKGLPKSLKIVDLS 159 (406)
Q Consensus 141 ~s~~~~~~l~~G~~VIDlS 159 (406)
...+..+.+..+-++|..+
T Consensus 106 ~~~~~~~~l~~~G~~v~~G 124 (183)
T d1pqwa_ 106 AIQRGVQILAPGGRFIELG 124 (183)
T ss_dssp HHHHHHHTEEEEEEEEECS
T ss_pred HHHHHHHHhcCCCEEEEEc
Confidence 5555656665555666553
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=82.73 E-value=0.21 Score=41.45 Aligned_cols=17 Identities=12% Similarity=0.132 Sum_probs=13.0
Q ss_pred ccCCCCCEEEEcCCCcc
Q 015441 125 ADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 125 ~~~~~vDvVF~al~~~~ 141 (406)
+++.++|+|+.+.+...
T Consensus 67 ~~l~~aDvVVita~~~~ 83 (162)
T d1up7a1 67 GAVVDAKYVIFQFRPGG 83 (162)
T ss_dssp HHHTTCSEEEECCCTTH
T ss_pred cccCCCCEEEEecccCC
Confidence 34579999999987653
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=82.53 E-value=0.3 Score=40.74 Aligned_cols=91 Identities=13% Similarity=0.156 Sum_probs=45.5
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccCcccCCCCCEEEEcCCCcchH
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVKDADFSNVDAVFCCLPHGTTQ 143 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~~~~~~~vDvVF~al~~~~s~ 143 (406)
.+|.|+| +|-+++.++..|.+.. .++..++...+..+.+...+.... .+... ..+.....++|+++-|+|.+...
T Consensus 19 k~vlIlG-aGGaarai~~aL~~~~-~~i~I~nR~~~~a~~l~~~~~~~~--~~~~~-~~~~~~~~~~diiIN~tp~g~~~ 93 (171)
T d1p77a1 19 QHVLILG-AGGATKGVLLPLLQAQ-QNIVLANRTFSKTKELAERFQPYG--NIQAV-SMDSIPLQTYDLVINATSAGLSG 93 (171)
T ss_dssp CEEEEEC-CSHHHHTTHHHHHHTT-CEEEEEESSHHHHHHHHHHHGGGS--CEEEE-EGGGCCCSCCSEEEECCCC----
T ss_pred CEEEEEC-CcHHHHHHHHHHcccC-ceeeeccchHHHHHHHHHHHhhcc--ccchh-hhccccccccceeeecccccccc
Confidence 5799999 6777999999888755 466555422211222221111000 11101 11122346789999999988654
Q ss_pred HHHhh----CCCCCEEEEcC
Q 015441 144 EIIKG----LPKSLKIVDLS 159 (406)
Q Consensus 144 ~~~~~----l~~G~~VIDlS 159 (406)
...+. +..+..|+|+.
T Consensus 94 ~~~~~~~~~~~~~~~~~D~v 113 (171)
T d1p77a1 94 GTASVDAEILKLGSAFYDMQ 113 (171)
T ss_dssp ---CCCHHHHHHCSCEEESC
T ss_pred cccchhhhhhcccceeeeee
Confidence 43321 12355677753
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=81.76 E-value=0.45 Score=39.37 Aligned_cols=89 Identities=13% Similarity=0.117 Sum_probs=48.0
Q ss_pred cEEEEECcccHHHHHHHHHHHcCCCceEEEEeccCcCCccccccccCccccCCCcccccC--cccCCCCCEEEEcCCCcc
Q 015441 64 VRIGLLGASGYTGAEIVRLLANHPYFGIKLMTADRKAGQSIGSVFPHLISQDLPTMVAVK--DADFSNVDAVFCCLPHGT 141 (406)
Q Consensus 64 ikVaIvGATG~vG~eLlrlL~~hp~~elv~l~s~~~~G~~i~~v~p~l~~~~~~~~~~~~--~~~~~~vDvVF~al~~~~ 141 (406)
-+|.|.||+|-+|+..++++.... .+++.+.++.+.-+...+ +.........+.. .....++|+||.|.|..
T Consensus 29 ~~VlI~ga~G~vG~~aiqlak~~G-~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G~~- 102 (171)
T d1iz0a2 29 EKVLVQAAAGALGTAAVQVARAMG-LRVLAAASRPEKLALPLA----LGAEEAATYAEVPERAKAWGGLDLVLEVRGKE- 102 (171)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTT-CEEEEEESSGGGSHHHHH----TTCSEEEEGGGHHHHHHHTTSEEEEEECSCTT-
T ss_pred CEEEEEeccccchhhhhhhhcccc-cccccccccccccccccc----cccceeeehhhhhhhhhccccccccccccchh-
Confidence 369999999999999999887664 577666543221111111 1100000011100 11235799999998853
Q ss_pred hHHHHhhCCCCCEEEEc
Q 015441 142 TQEIIKGLPKSLKIVDL 158 (406)
Q Consensus 142 s~~~~~~l~~G~~VIDl 158 (406)
..+....+..+-++|..
T Consensus 103 ~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 103 VEESLGLLAHGGRLVYI 119 (171)
T ss_dssp HHHHHTTEEEEEEEEEC
T ss_pred HHHHHHHHhcCCcEEEE
Confidence 33344445554455544
|