Citrus Sinensis ID: 015448

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400------
Protein Sequence
MTRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPIDRITKNEKDNIVDKVNDSSNNSDDTIKVRMGKKRGGTRETNDKLSNEEIQWSKSDSAAGKKLKKKSKEKEGELDAIDDAKNSGGVVPGQNKDANLNGSGDVEMEKDLKRKGRKTSENLSNKGIQVHDDDKRFRKKQKKRSKEKQGELDIIDNGETAFSELFSANIAGNPGFDGDNNMVNEASKFNSVDGLVTSSGKKKKSKNRGMGLTVQLSQEPEVGLGGPSTWGDE
Secondary Structure (PSIPRED)
ccccccccccccccccccccccEEEcccccccccccccccccccEEEcccccccccccccccccccEEEcccccccccccccccccccEEEcccccccccccccccccccEEEcccccccccccccccccccccccccccccccEEEcccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHcccccHHHHHHHHcHHHHHHHHHHHHHHHHcccccHHHccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccccccccccHHHHHcccccccccEEEHHHHccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHccccccccccEEEcccccccccHHHcccccccEEEcccccccccHHHHHcccccEEEcccccccccHHHcccccccEEEcccccccccHHHHHcccccEEEcccccccEcHHHcccccccEEHHHHccccccEEEEccccccccccHHHHEEEEccccHHccHccHHHHHHHHHHcccccccccccccccccEHHHHHccccccccHHcccccccccccccccccccccccccccccccccEEcccccccEcccccHHccccccccccccHEEEEcccccccccccccccccccHHHHHHHHHHHcHHHcccccccccccccHHHHHHccccccccccccccccccccccccEEEEEEcccccccccccccccHHccccccccccccccccccc
Coil and Loop (DISEMBL)
MTRLSTQQIlkdnktcdpnsikslSLTHKalsdvscltdfnnlerldlssnnltsleglkhcvnlkWLSLVQNKLQSlkgieglskptvlnvgknklrsmddVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNlnnlnlqgnpvAEYDKLAKKVKTLlpnlcifnarpidritknekdnivdkvndssnnsddtikvrmgkkrggtretndklsneeiqwsksdsaaGKKLKKKSkekegeldaiddaknsggvvpgqnkdanlngsgdveMEKDLkrkgrktsenlsnkgiqvhdddKRFRKKQKKRSKEKQGELDIIDNGETAFSELFSaniagnpgfdgdnnmvneaskfnsvdglvtssgkkkksknrgmgltvqlsqepevglggpstwgde
Flexible Loop (DISEMBL)
mtrlstqqilkdnktcdpnsIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSlkgieglskptvlnvgknklrsmddvTSVVSLRalilndneivSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLlpnlcifnarpidritknekdnivdkvndssnnsddtikvrmgkkrggtretndklsneeiqwsksdsaagkklkkkskekegeldaiddaknsggvvpgqnkdanlngsgdvemEKDLkrkgrktsenlsnkgiqvhdddkrfrkkqkkrskekqgeldiidnGETAFSELFSANIAGNPGFDGDNNMVNEASKFnsvdglvtssgkkkksknrgmgltvqlsqepevglggpstwgde
Low Complexity Region (SEG)
MTRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFnlnnlnlQGNPVAEYDKLAKKVKTLLPNLCIFNARPIDRITKNEKDNIVDKVndssnnsddTIKVRMGKKRGGTRETNDKLSNEEIQWsksdsaagkklkkkskekegeldAIDDAKNSGGVVPGQNKDANLNGSGDVEMEKDLKRKGRKTSENLSNKGIQVHdddkrfrkkqkkrskekQGELDIIDNGETAFSELFSANIAGNPGFDGDNNMVNEASKFNSVDGLVTssgkkkkskNRGMGLTVQLSQEPEVGLGGPSTWGDE
Disordered region (IsUnstruct)
*************************LTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPIDRIT*******************************************************************************************************************************************************AFSELFSANI***************************************************************
Disordered Region (DISOPRED)
MTRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPIDRITKNEKDNIVDKVNDSSN****************************************************************************************************************************************FSE*********************************************************************
Disordered Region (DISEMBL)
MTRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPIDRITKNEKDNIVDKVNDSSNNSDDTIKVRM*************LSNEEIQWS********************LDAIDDAKNSGGVVPGQNKDANLNGSGDVEMEKDLKRKGRKTSENLSNKGIQVHD******************ELDIIDNGETAFSELFSANIAGNPGFDGDNNMVNEASKFNSVDG***************MGLTVQLSQEPE************
Disordered Region (DISPRO)
*TRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPIDRITKNEKDNIVDKVNDSSNNSDDTIKVRMGKK*************************************************GG*********N**GS****MEKDLKRK*****************DDKRFR*************LDIIDNGETAFSELFSANIAG***************KFNSVDGLVTSSG*********************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPIDRITKNEKDNIVDKVNDSSNNSDDTIKVRMGKKRGGTRETNDKLSNEEIQWSKSDSAAGKKLKKKSKEKEGELDAIDDAKNSGGVVPGQNKDANLNGSGDVEMEKDLKRKGRKTSENLSNKGIQVHDDDKRFRKKQKKRSKEKQGELDIIDNGETAFSELFSANIAGNPGFDGDNNMVNEASKFNSVDGLVTSSGKKKKSKNRGMGLTVQLSQEPEVGLGGPSTWGDE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	406	2.2.26 [Sep-21-2011]
Q09JZ4	432	Leucine-rich repeat-conta	N/A	no	0.438	0.412	0.301	4e-13
Q4R6X9	523	Leucine-rich repeat-conta	N/A	no	0.463	0.359	0.263	2e-10
Q32PL1	345	Protein phosphatase 1 reg	no	no	0.342	0.402	0.270	4e-10
Q9D5E4	523	Leucine-rich repeat-conta	yes	no	0.369	0.286	0.264	4e-10
Q5HZV9	360	Protein phosphatase 1 reg	yes	no	0.357	0.402	0.295	6e-10
Q15435	360	Protein phosphatase 1 reg	yes	no	0.357	0.402	0.295	1e-09
Q9H069	523	Leucine-rich repeat-conta	no	no	0.371	0.288	0.283	2e-09
Q3T0W4	360	Protein phosphatase 1 reg	no	no	0.270	0.305	0.310	7e-09
Q5RFS7	360	Protein phosphatase 1 reg	yes	no	0.357	0.402	0.289	1e-08
Q3UM45	361	Protein phosphatase 1 reg	no	no	0.357	0.401	0.289	1e-08

>sp|Q09JZ4|DAAF1_CHLRE Leucine-rich repeat-containing protein ODA7 OS=Chlamydomonas reinhardtii GN=ODA7 PE=1 SV=1

 Score = 76.3 bits (186), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 93/196 (47%), Gaps = 18/196 (9%)

Query: 1   MTRLSTQQILKDNKTCDPNSIK-SLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGL 59
           MT+ +  ++ K N      S+   L    K  S ++CL D+ NL+ L L  N L +LEGL
Sbjct: 5   MTKEALLEVCKQNGLYRTASLNDKLYCNFKGFSQIACLEDYVNLKALFLEGNVLETLEGL 64

Query: 60  KHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEI 119
               +LK L + QN +  + G+E +     LN+  N+L  ++ +    +LR LI   N +
Sbjct: 65  PPLADLKCLYVQQNCIWKISGLEAVPGLDTLNISNNQLTKLEGLACCPALRTLIATHNHL 124

Query: 120 V---SICKLDQMKELNTLGMDS-------------YFFNLNNLNLQGNPVAEYDKLAKKV 163
           V   S+  L + K L TL + +                +L  L L+GNPV    K  +KV
Sbjct: 125 VTLDSVAHLAECKALQTLDLQNNELEDPGIVDILKQIPDLRCLYLKGNPVVSNIKNYRKV 184

Query: 164 -KTLLPNLCIFNARPI 178
             T +P+L   + RP+
Sbjct: 185 LVTSIPSLTYLDDRPV 200

Cilium-specific protein required for cilia structures. Axonemal dynein-associated protein that participates in a structural link between inner and outer row dyneins.
Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q4R6X9|LRC48_MACFA Leucine-rich repeat-containing protein 48 OS=Macaca fascicularis GN=LRRC48 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 97/197 (49%), Gaps = 9/197 (4%)

Query: 21  IKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG 80
           + SL L  + +  +  L  F NL +L L +N +  + GL++  +L WL L  N +++++G
Sbjct: 45  VLSLQLDFRNILRIDNLWQFENLRKLQLDNNIIEKIGGLENLTHLVWLDLSFNNIETIEG 104

Query: 81  IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYF 140
           ++ L     L++  N++  +D + ++V L+ L L +N+I      D M  +  L     F
Sbjct: 105 LDTLVNLEDLSLFNNRISKIDSLDALVKLQVLSLGNNQI------DNMMNIVYL---RRF 155

Query: 141 FNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPIDRITKNEKDNIVDKVNDSSNNS 200
             L  L+L GNP++E +     +   LP+L   + R ID  TK   +       D   + 
Sbjct: 156 QCLRTLSLSGNPISEAEDYKMFICAYLPDLVYLDFRRIDDHTKELAEAKHQYSIDELKHR 215

Query: 201 DDTIKVRMGKKRGGTRE 217
           ++ ++VR+  +R    E
Sbjct: 216 ENLMQVRLQDERARQEE 232

Macaca fascicularis (taxid: 9541)

>sp|Q32PL1|PP1R7_DANRE Protein phosphatase 1 regulatory subunit 7 OS=Danio rerio GN=ppp1r7 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 85/148 (57%), Gaps = 9/148 (6%)

Query: 31  LSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVL 90
           ++ +  L   +NL  L + SN +T LEGL++ VNL+ L L  N ++ ++G+E   K + L
Sbjct: 205 ITQLQNLDGLHNLTVLSIQSNRITKLEGLQNLVNLRELYLSHNGIEVMEGLENNKKLSTL 264

Query: 91  NVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQG 150
           ++  N+++ +++++ +  L+   +NDN+I +   LD++K  N  G+++ +       L+ 
Sbjct: 265 DIAANRIKKIENISHLTDLKEFWMNDNQIENWADLDELK--NAKGLETVY-------LER 315

Query: 151 NPVAEYDKLAKKVKTLLPNLCIFNARPI 178
           NP+ +  +  +K+   LP++   +A  I
Sbjct: 316 NPLQKDPQYRRKIMLALPSVRQIDATFI 343

Regulatory subunit of protein phosphatase 1.

Danio rerio (taxid: 7955)

>sp|Q9D5E4|LRC48_MOUSE Leucine-rich repeat-containing protein 48 OS=Mus musculus GN=Lrrc48 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 86/159 (54%), Gaps = 9/159 (5%)

Query: 21  IKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG 80
           + SL L  + +  +  L  F NL++L L++N +  +EGL + ++L WL L  N +++++G
Sbjct: 45  VLSLQLDFQNILRIDNLWQFENLKKLQLNNNIIERIEGLTNLIHLVWLDLSFNNIEAIEG 104

Query: 81  IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYF 140
           ++ L     L++  N++  +D + ++V L+ L L +N+I ++  +  ++          F
Sbjct: 105 LDTLVNLEDLSLSNNRISKVDSLDALVKLQVLSLGNNQISNMMNIIYLRR---------F 155

Query: 141 FNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPID 179
             L  L+L GNPV+E ++    +   L +L   + R +D
Sbjct: 156 PCLRTLSLAGNPVSEAEEYKMFIYAYLSDLVYLDFRRVD 194

Mus musculus (taxid: 10090)

>sp|Q5HZV9|PP1R7_RAT Protein phosphatase 1 regulatory subunit 7 OS=Rattus norvegicus GN=Ppp1r7 PE=1 SV=1

 Score = 65.9 bits (159), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 88/159 (55%), Gaps = 14/159 (8%)

Query: 21  IKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG 80
           ++SL L    ++ +  L   +NL  L + SN LT +EGL++ VNL+ L L  N ++ ++G
Sbjct: 210 LESLFLGKNKITKLQNLDALSNLTVLSMQSNRLTKIEGLQNLVNLRELYLSHNGIEVIEG 269

Query: 81  IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYF 140
           +E  +K T+L++  N+++ +++++ +  L+   +NDN + S   LD++K     G  S  
Sbjct: 270 LENNNKLTMLDIASNRIKKIENISHLTELQEFWMNDNLLESWSDLDELK-----GARS-- 322

Query: 141 FNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPID 179
             L  + L+ NP+ +  +  +KV   LP     + R ID
Sbjct: 323 --LETVYLERNPLQKDPQYRRKVMLALP-----SVRQID 354

Regulatory subunit of protein phosphatase 1.

Rattus norvegicus (taxid: 10116)

>sp|Q15435|PP1R7_HUMAN Protein phosphatase 1 regulatory subunit 7 OS=Homo sapiens GN=PPP1R7 PE=1 SV=1

 Score = 64.7 bits (156), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 87/159 (54%), Gaps = 14/159 (8%)

Query: 21  IKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG 80
           ++SL L    ++ +  L    NL  L + SN LT +EGL++ VNL+ L L  N ++ ++G
Sbjct: 210 LESLFLGKNKITKLQNLDALTNLTVLSMQSNRLTKIEGLQNLVNLRELYLSHNGIEVIEG 269

Query: 81  IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYF 140
           +E  +K T+L++  N+++ +++++ +  L+   +NDN + S   LD++K     G  S  
Sbjct: 270 LENNNKLTMLDIASNRIKKIENISHLTELQEFWMNDNLLESWSDLDELK-----GARS-- 322

Query: 141 FNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPID 179
             L  + L+ NP+ +  +  +KV   LP     + R ID
Sbjct: 323 --LETVYLERNPLQKDPQYRRKVMLALP-----SVRQID 354

Regulatory subunit of protein phosphatase 1.

Homo sapiens (taxid: 9606)

>sp|Q9H069|LRC48_HUMAN Leucine-rich repeat-containing protein 48 OS=Homo sapiens GN=LRRC48 PE=2 SV=2

 Score = 64.3 bits (155), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 84/166 (50%), Gaps = 15/166 (9%)

Query: 21  IKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG 80
           + SL L  + +  +  L  F NL +L L +N +  +EGL++  +L WL L  N +++++G
Sbjct: 45  VLSLQLDFRNILRIDNLWQFENLRKLQLDNNIIEKIEGLENLAHLVWLDLSFNNIETIEG 104

Query: 81  IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEI---VSICKLDQMKELNTLGMD 137
           ++ L     L++  N++  +D + ++V L+ L L +N I   ++I  L + K L TL   
Sbjct: 105 LDTLVNLEDLSLFNNRISKIDSLDALVKLQVLSLGNNRIDNMMNIIYLRRFKCLRTLS-- 162

Query: 138 SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPIDRITK 183
                     L  NP++E +     +   LP+L   + R ID  TK
Sbjct: 163 ----------LSRNPISEAEDYKMFICAYLPDLMYLDYRRIDDHTK 198

Homo sapiens (taxid: 9606)

>sp|Q3T0W4|PP1R7_BOVIN Protein phosphatase 1 regulatory subunit 7 OS=Bos taurus GN=PPP1R7 PE=1 SV=1

 Score = 62.0 bits (149), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 65/119 (54%)

Query: 20  SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK 79
           S++ L L    +  +  L     LE LD+S N L ++EG+     LK L LV NK+  ++
Sbjct: 121 SLRELDLYDNQIRRIENLDALTELEVLDISFNLLRNIEGIDKLTRLKKLFLVNNKINKIE 180

Query: 80  GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS 138
            I  L +  +L +G N++R+++++ ++ +L +L L  N+I  +  LD +  L  L M S
Sbjct: 181 NISSLHQLQMLELGSNRIRAIENIDTLTNLESLFLGKNKITKLQNLDALTNLTVLSMQS 239

Regulatory subunit of protein phosphatase 1. Inactivates the PPP1CC isoform 2 during epididymal sperm maturation.

Bos taurus (taxid: 9913)

>sp|Q5RFS7|PP1R7_PONAB Protein phosphatase 1 regulatory subunit 7 OS=Pongo abelii GN=PPP1R7 PE=2 SV=1

 Score = 61.2 bits (147), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 86/159 (54%), Gaps = 14/159 (8%)

Query: 21  IKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG 80
           ++SL L    ++ +  L    NL  L + SN LT +EGL++ VNL+ L L  N ++ ++G
Sbjct: 210 LESLFLGKNKITKLQNLDALTNLTVLSMQSNRLTKIEGLQNLVNLQELYLSHNGIEVIEG 269

Query: 81  IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYF 140
           +E  +K T+L++  N+++ +++++ +   +   +NDN + S   LD++K     G  S  
Sbjct: 270 LENNNKLTMLDIASNRIKKIENISHLTEPQEFWMNDNLLESWSDLDELK-----GARS-- 322

Query: 141 FNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPID 179
             L  + L+ NP+ +  +  +KV   LP     + R ID
Sbjct: 323 --LETVYLERNPLQKDPQYRRKVMLALP-----SVRQID 354

Regulatory subunit of protein phosphatase 1.

Pongo abelii (taxid: 9601)

>sp|Q3UM45|PP1R7_MOUSE Protein phosphatase 1 regulatory subunit 7 OS=Mus musculus GN=Ppp1r7 PE=1 SV=2

 Score = 61.2 bits (147), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 85/159 (53%), Gaps = 14/159 (8%)

Query: 21  IKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG 80
           ++SL L    ++ +  L    NL  L + SN L  +EGL+  VNL+ L L  N ++ ++G
Sbjct: 211 LESLFLGKNKITKLQNLDALTNLTVLSVQSNRLAKIEGLQSLVNLRELYLSNNGIEVIEG 270

Query: 81  IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYF 140
           +E  +K T+L++  N+++ +++++ +  L+   +NDN + S   LD++K     G  S  
Sbjct: 271 LENNNKLTMLDIASNRIKKIENISHLTELQEFWMNDNLLESWSDLDELK-----GARS-- 323

Query: 141 FNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPID 179
             L  + L+ NP+ +  +  +KV   LP     + R ID
Sbjct: 324 --LETVYLERNPLQKDPQYRRKVMLALP-----SVRQID 355

Regulatory subunit of protein phosphatase 1.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	406
255565717	485	Protein phosphatase 1 regulatory subunit	0.972	0.814	0.401	2e-60
224131776	474	predicted protein [Populus trichocarpa]	0.953	0.816	0.348	9e-55
449443646	478	PREDICTED: leucine-rich repeat-containin	0.972	0.826	0.355	8e-52
357453175	468	Protein phosphatase 1 regulatory subunit	0.379	0.329	0.632	9e-50
217074948	468	unknown [Medicago truncatula] gi|3885080	0.379	0.329	0.632	9e-50
359479546	446	PREDICTED: protein phosphatase 1 regulat	0.894	0.813	0.343	3e-49
359806683	472	uncharacterized protein LOC100782829 [Gl	0.379	0.326	0.614	2e-48
356543614	471	PREDICTED: protein phosphatase 1 regulat	0.379	0.326	0.608	9e-47
388511123	474	unknown [Lotus japonicus]	0.379	0.324	0.614	3e-46
255635076	259	unknown [Glycine max]	0.379	0.594	0.608	6e-46

>gi|255565717|ref|XP_002523848.1| Protein phosphatase 1 regulatory subunit SDS22, putative [Ricinus communis] gi|223536936|gb|EEF38574.1| Protein phosphatase 1 regulatory subunit SDS22, putative [Ricinus communis]

 Score =  239 bits (610), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 199/496 (40%), Positives = 266/496 (53%), Gaps = 101/496 (20%)

Query: 1   MTRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLK 60
           M +LS +QILKD ++ DPNSI SLSLT KALS+VSCLT F NLERLDL+ N+LTSLEGL 
Sbjct: 1   MGKLSMEQILKDKQSGDPNSISSLSLTQKALSEVSCLTQFTNLERLDLAFNSLTSLEGLC 60

Query: 61  HCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNK------------LRSM----DDVT 104
            C+NLKWLS+VQNKL +LKGIE L K TVLN GKNK            LR++    +D+ 
Sbjct: 61  SCINLKWLSVVQNKLLNLKGIEALYKLTVLNAGKNKLKSMDEVRSLVSLRALILNDNDIV 120

Query: 105 SVV------SLRALILNDNEI-----------------VSICKLD----------QMKEL 131
           S+        L  L+L+ N I                 +S C+L           ++KEL
Sbjct: 121 SICKLDQLKELNTLVLSRNPIREIGESLVKVKSLTKLSLSYCQLQTIGSSLKSCIELKEL 180

Query: 132 NTLGMD---------------------------------SYFFNLNNLNLQGNPVAEYDK 158
                D                                 S   +L NLNLQGNP++E DK
Sbjct: 181 RLAHNDIKSLPVELSYNKNLQNLDLGNNVITRWSDVKVLSSIVDLKNLNLQGNPISEIDK 240

Query: 159 LAKKVKTLLPNLCIFNARPIDRITKNEKDNIVDKVNDSSNNSDDTIKVRMGKKRGGTRET 218
           L+KK+  LLPNL IFNARP+D+ TK        +++D S    + + V   K++   R+ 
Sbjct: 241 LSKKILKLLPNLHIFNARPLDKGTKKGGSG---RIDDFSLIPVNELAVPREKQKNSLRKI 297

Query: 219 NDKLSNEEIQWSKSDSAAGKKLKKKSKEKEGELDAIDDAKNSGGVVPGQNK-----DANL 273
               + +  +  K      KK++ K  EKE      D     GG V  + K         
Sbjct: 298 GHDYATDA-KTEKDLKKKNKKVEDKLSEKE------DVPVYEGGEVMVEKKLKRKLSLEQ 350

Query: 274 NGSGDVEMEKDLKRKGRKTSENLSNKGIQVHDD--DKRFRKKQKKRSKEKQGELDIIDNG 331
           + S D+ +E D K+K +K +E  S K +QV  D  D   RK + K+SKE+Q ELD+ID+G
Sbjct: 351 DDSNDLGIE-DGKQKRKKANEEFSKKDVQVDKDDYDAVKRKSKSKKSKEEQDELDVIDDG 409

Query: 332 ETAFSELFSANIAGNPGFDGDNNMVNEASK-FNSVDGLVTSSGKKKKSKNRGMGLTVQLS 390
           +T F++LF+ N A +    G+  M+++A K  N + G+VT SGKKKK+KN G G  VQL 
Sbjct: 410 DTPFADLFAVNTADSLKVSGEKKMLDKAGKDINLMGGVVTVSGKKKKTKNCGAGSIVQLP 469

Query: 391 QEPEVGLGGPSTWGDE 406
              EVG+GGPSTWGDE
Sbjct: 470 AVIEVGMGGPSTWGDE 485

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131776|ref|XP_002328105.1| predicted protein [Populus trichocarpa] gi|222837620|gb|EEE75985.1| predicted protein [Populus trichocarpa]

 Score =  220 bits (561), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 172/493 (34%), Positives = 250/493 (50%), Gaps = 106/493 (21%)

Query: 1   MTRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLK 60
           M  LS+QQ+LK+ +T D ++I S+SLTH+ LSD+SCL++F NLERLDL+ NNLTSL+GL 
Sbjct: 1   MASLSSQQVLKEKQTRDADTITSISLTHRNLSDISCLSEFQNLERLDLAFNNLTSLQGLS 60

Query: 61  HCVNLKWLSLVQN----------------------KLQSLKGIEGLSKPTVLNVGKNKLR 98
            CV LKWLS+VQN                      K++S+  +  L     L +  N++ 
Sbjct: 61  SCVKLKWLSVVQNKLESLKGIESLSNLTVLNAGKNKIKSIDEVRSLVSLRALILNDNEIV 120

Query: 99  SMDDVTSVVSLRALILNDNEIVSI-----------------CKLD----------QMKEL 131
           S+  +  +  L  L+L+ N I  I                 C L           ++KEL
Sbjct: 121 SICKLDQMKELNTLVLSRNPIREIGESLFKVKSMTKLSLSNCHLQTIGSSLKSCIELKEL 180

Query: 132 NTLGMD---------------------------------SYFFNLNNLNLQGNPVAEYDK 158
                D                                 S   +L NLNL GNP+AE  K
Sbjct: 181 RLAHNDIKTLPAELAYNKKLQNLDLGNNLITRWSDVKVLSSLVDLKNLNLLGNPIAENAK 240

Query: 159 LAKKVKTLLPNLCIFNARPIDRITKNEKDNIVDKVNDSSNNSDDTIKVRMGKKRGGTRET 218
           + KKV+  LPNL IFNARP+D+  +NE   I  + +DSS    + +     KK+  TR+ 
Sbjct: 241 ITKKVQKFLPNLHIFNARPVDKSARNE---ISGRADDSSLIPTNELDYHSEKKKDHTRDV 297

Query: 219 NDKLSNEEIQWSKSDSA---AGKKLKKKSKEKEGELDAIDDAKNSGGVVPGQNKDANLNG 275
           N      + +    D+A   A K L++K K+ +G++  +++A           KD     
Sbjct: 298 NSSKHVTDQRRDHFDNASDDAEKDLRQKRKKTKGKVSKMEEAST-------DEKD----- 345

Query: 276 SGDVEMEKDLKRKGRKTSENLSNKGIQVHDDDKRFRKKQKKRSKEKQ--GELDIIDNGET 333
             D  +EK LKRK +   E L N   ++H+DD+   +K+ K  K ++   ELDIIDNGE 
Sbjct: 346 --DAVIEKKLKRK-KPHEELLKNNDDKIHNDDRTKVEKKLKSKKSRKELSELDIIDNGEV 402

Query: 334 AFSELFSANIAGNPGFDGDNNMVNEASKFNSVDGLVTSSGKKKKSKNRGMGLTVQLSQEP 393
           +F++LFS +   N   + ++  V++ S  N + GL+  S KKKK+KN+G+  TV LS   
Sbjct: 403 SFADLFSVDAVENLKHNSESKTVDK-SGINVLGGLLVVSAKKKKTKNQGLVSTVPLSPAV 461

Query: 394 EVGLGGPSTWGDE 406
           EVG+GGPSTWGDE
Sbjct: 462 EVGMGGPSTWGDE 474

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443646|ref|XP_004139588.1| PREDICTED: leucine-rich repeat-containing protein 9-like [Cucumis sativus]

 Score =  211 bits (536), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 174/489 (35%), Positives = 249/489 (50%), Gaps = 94/489 (19%)

Query: 1   MTRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLK 60
           MTRL  QQ+L D KT DP +I +L L  KALSD++ L+ F NLE+LDL+ NNLTSL+GL+
Sbjct: 1   MTRLDIQQVLNDYKTKDPLTITTLKLNQKALSDITGLSLFKNLEKLDLTFNNLTSLQGLE 60

Query: 61  HCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRA--------- 111
            C NLKWLS+VQNKL +LKGI  LSK TVLN GKNKLRSMD++  +V L A         
Sbjct: 61  SCTNLKWLSVVQNKLDNLKGI--LSKLTVLNAGKNKLRSMDEIRPLVGLCALILNDNEIA 118

Query: 112 -------------LILNDNEIVSI-----------------CKLD----------QMKEL 131
                        L+L+ N I SI                 CKL           Q+KEL
Sbjct: 119 SICKLDQMKNLNTLVLSRNPIRSIGDSLLKVKSMKKLSFSNCKLQSIDSSLKSCVQLKEL 178

Query: 132 -----------NTLGMDSYFFNLN----------------------NLNLQGNPVAEYDK 158
                      N L  +    NL+                      NLNLQGNP+AE  K
Sbjct: 179 RLAHNEIRMLPNDLAHNKKLLNLDLGNNVIVRWSDLKVLSSLGYLRNLNLQGNPIAESAK 238

Query: 159 LAKKVKTLLPNLCIFNARPIDRITKNEKDNIVDKVNDSSNNSDDTIKVRMGKKRGGTRET 218
           L KK++ L+P L + NARPID+  +NE DN  DK +D+   + +  K +  +K  G  ET
Sbjct: 239 LDKKIRRLVPGLRVLNARPIDKCIQNENDNGSDKEDDTPIRNLERQKEKKDRKLTGNVET 298

Query: 219 NDKLSNEEIQWSKSDSAAGKKLKKKSKEKEGELDAIDDAKNSGGVVPGQNKDANLNGSGD 278
           +  +   +    K D   G  +++KS+ K+  +D I   +    VVP  +K  N +G+ D
Sbjct: 299 HPSVQGTD---GKLDHTNGADVERKSERKKRNMDKITREEK---VVPSLDKKIN-HGTND 351

Query: 279 VEMEKDLKRKGRKTSENLSNKGIQVHDDD-KRFRKKQKKRSKEKQGELDIIDNGETAFSE 337
           ++ EK + ++ R  S       + +H +   +  K +KK  KE + ++D+ID+ E  F +
Sbjct: 352 IDEEKKISKQKRAKSN--KEPSLPIHKETLTKIEKHKKKAKKEGERQVDVIDDTEVPFEQ 409

Query: 338 LFSANIAGNPGFDGDNNMVNEASKFNSVDGLVTSSGKKKKSKNRGMGLTVQLSQEPEVGL 397
           LF  N+  +     +     E  + N    L + S  +K+SK++     +Q+S   E+G+
Sbjct: 410 LFGDNLVEDMDAVLEKVGEKEVEEMNLKPNLASFSANRKESKSQDRVGRLQISPIVEIGM 469

Query: 398 GGPSTWGDE 406
            G STWGDE
Sbjct: 470 DGISTWGDE 478

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357453175|ref|XP_003596864.1| Protein phosphatase 1 regulatory subunit [Medicago truncatula] gi|355485912|gb|AES67115.1| Protein phosphatase 1 regulatory subunit [Medicago truncatula]

 Score =  204 bits (518), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 105/166 (63%), Positives = 129/166 (77%), Gaps = 12/166 (7%)

Query: 1   MTRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLK 60
           MTRLS++Q+LKDN   +P+SI SL LTHKALSDVSCL  FN LE+LDL  NNLTSLEGL+
Sbjct: 1   MTRLSSEQVLKDNNAVNPSSISSLHLTHKALSDVSCLASFNKLEKLDLKFNNLTSLEGLR 60

Query: 61  HCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIV 120
            CV LKWLS+V+NKL+SL+GI+GL+K TVLN GKNKL+SMD++ S+ ++RALILNDNEIV
Sbjct: 61  ACVTLKWLSVVENKLESLEGIQGLTKLTVLNAGKNKLKSMDEIGSLSTIRALILNDNEIV 120

Query: 121 SICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTL 166
           SIC LDQMKELNTL             L  NP+ +  +  KKVK++
Sbjct: 121 SICNLDQMKELNTLV------------LSKNPIRKIGEALKKVKSI 154

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074948|gb|ACJ85834.1| unknown [Medicago truncatula] gi|388508012|gb|AFK42072.1| unknown [Medicago truncatula]

 Score =  204 bits (518), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 105/166 (63%), Positives = 129/166 (77%), Gaps = 12/166 (7%)

Query: 1   MTRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLK 60
           MTRLS++Q+LKDN   +P+SI SL LTHKALSDVSCL  FN LE+LDL  NNLTSLEGL+
Sbjct: 1   MTRLSSEQVLKDNNAVNPSSISSLHLTHKALSDVSCLASFNKLEKLDLKFNNLTSLEGLR 60

Query: 61  HCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIV 120
            CV LKWLS+V+NKL+SL+GI+GL+K TVLN GKNKL+SMD++ S+ ++RALILNDNEIV
Sbjct: 61  ACVTLKWLSVVENKLESLEGIQGLTKLTVLNAGKNKLKSMDEIGSLSTIRALILNDNEIV 120

Query: 121 SICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTL 166
           SIC LDQMKELNTL             L  NP+ +  +  KKVK++
Sbjct: 121 SICNLDQMKELNTLV------------LSKNPIRKIGEALKKVKSI 154

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479546|ref|XP_002273076.2| PREDICTED: protein phosphatase 1 regulatory subunit 7-like [Vitis vinifera] gi|296084874|emb|CBI28283.3| unnamed protein product [Vitis vinifera]

 Score =  202 bits (513), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 168/489 (34%), Positives = 230/489 (47%), Gaps = 126/489 (25%)

Query: 1   MTRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLK 60
           MTRLS++QIL++N+T D N+I +LSL HKALS +SCL DF NLERLDLS NNLTSL+ LK
Sbjct: 1   MTRLSSKQILQENQTDDHNAISALSLNHKALSHISCLADFKNLERLDLSFNNLTSLQDLK 60

Query: 61  HCVNLKWLSLVQ----------------------NKLQSLKGIEGLSKPTVLNVGKNKLR 98
            CVNLKWLS++Q                      NKL+S+  +  L     L +  N++ 
Sbjct: 61  LCVNLKWLSVLQNKLQSLEGIEELSKLTVLNAGKNKLRSMDEVRSLVSLRALILNDNEIG 120

Query: 99  SMDDVTSVVSLRALILNDNEI-----------------VSICKLD----------QMKEL 131
           S+  +  +  L  L+L+ N +                 +S C++           ++KEL
Sbjct: 121 SICRLDRMKDLNTLVLSRNPVHEIGESLVKLKSITKLSLSKCQIQSIGSSLKSCIELKEL 180

Query: 132 NTLGMD--------SY-------------------------FFNLNNLNLQGNPVAEYDK 158
                D        +Y                           NL N NLQGNP+A  +K
Sbjct: 181 RLAHNDIKTLPAELAYNTKLQNLDLGNNLITSWSDLKVIRSLVNLKNFNLQGNPIAVKEK 240

Query: 159 LAKKVKTLLPNLCIFNARPIDRITKNEKDNIVDKVNDSSNNSDDTIKVRMGKKRGGTRET 218
           LAKK K LLPNL IFNARP D+ITK EK    DKV+D   N    ++V+   KR   R  
Sbjct: 241 LAKKTKRLLPNLQIFNARPTDKITKYEKG---DKVDDFPLNVATELEVKKKDKRDHGRAE 297

Query: 219 NDKLSNEEIQWSKSDSAAGKKLKKKSKEKEGELDAIDDAKNSGGVVPGQNKDANLNGSGD 278
            +K  +  +  S         L  + + K+ +  A D+AK     VP   +D  +     
Sbjct: 298 KNK--HNSMTESGLAHLVNGDLDVEKELKKKKRKANDEAKKK---VPILKEDHTM----- 347

Query: 279 VEMEKDLKRKGRKTSENLSNKGIQVHDDDKRFRKKQKKRSKEKQGELDIIDNGETAFSEL 338
             +E++L +K RK                             ++G L  ID+GET F EL
Sbjct: 348 --VERELNKKARKV----------------------------ERGGLSAIDDGETPFMEL 377

Query: 339 FSANIAGNPGFDGDNNMVNEASKFNSVDGLVTSSGKKKKSKNRGMGLTVQLSQEP-EVGL 397
           F+A  A N  +  ++         NS  G V+   KKKK+K RG+  ++QL   P EVGL
Sbjct: 378 FAAETAENSKYSVEDRTDKAFQDSNSAGGSVSLGAKKKKTKRRGISPSIQLLSLPVEVGL 437

Query: 398 GGPSTWGDE 406
           GGPSTW DE
Sbjct: 438 GGPSTWDDE 446

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806683|ref|NP_001241543.1| uncharacterized protein LOC100782829 [Glycine max] gi|255641324|gb|ACU20939.1| unknown [Glycine max]

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 102/166 (61%), Positives = 127/166 (76%), Gaps = 12/166 (7%)

Query: 1   MTRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLK 60
           M RLS+ Q+LKDN   DP S+ +L LTHKALSD++CL +F NLE+LDL  NNLTSLEGL+
Sbjct: 1   MARLSSDQVLKDNNAADPTSVTTLHLTHKALSDITCLANFVNLEKLDLKLNNLTSLEGLR 60

Query: 61  HCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIV 120
            CVNLKWLS+V+NKL+SL+GI+GL+K TVLN GKNKL+S+D V SVVSLRALILN+NEI 
Sbjct: 61  SCVNLKWLSVVENKLESLEGIQGLTKLTVLNAGKNKLKSIDQVMSVVSLRALILNENEIS 120

Query: 121 SICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTL 166
           SICKLDQ+K+LNTL             L  NP+ +  +   KVK++
Sbjct: 121 SICKLDQLKDLNTLV------------LSKNPIRKIGEALMKVKSI 154

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543614|ref|XP_003540255.1| PREDICTED: protein phosphatase 1 regulatory subunit 7-like [Glycine max]

 Score =  194 bits (492), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 101/166 (60%), Positives = 126/166 (75%), Gaps = 12/166 (7%)

Query: 1   MTRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLK 60
           M RLS+ Q+LKDN   DP S+ +L LTHKALSD++ L +F NLE+LDL  NNLTSLEGL+
Sbjct: 1   MARLSSDQVLKDNNAADPTSVTTLYLTHKALSDITFLANFINLEKLDLKLNNLTSLEGLR 60

Query: 61  HCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIV 120
            CVNLKWLS+V+NKL+SL+GI+GL+K TVLN GKNKL+S+D V SVVSLRALILN+NEI 
Sbjct: 61  SCVNLKWLSVVENKLESLEGIQGLTKLTVLNAGKNKLKSIDQVMSVVSLRALILNENEIS 120

Query: 121 SICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTL 166
           SICKLDQ+K+LNTL             L  NP+ +  +   KVK++
Sbjct: 121 SICKLDQLKDLNTLV------------LSKNPIRKIGEALMKVKSI 154

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511123|gb|AFK43623.1| unknown [Lotus japonicus]

 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 102/166 (61%), Positives = 126/166 (75%), Gaps = 12/166 (7%)

Query: 1   MTRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLK 60
           MTRLS+ Q+LK++   DP+S+ SL LT KAL DVSCL  F+NLE+LDL  NNLTSLEGLK
Sbjct: 1   MTRLSSDQVLKEHNGGDPSSVTSLQLTFKALCDVSCLAIFSNLEKLDLKFNNLTSLEGLK 60

Query: 61  HCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIV 120
            CVNLKWLS+V+NKL+SL+GI+GL+K TVLN GKNKL+S+D V+S+V LRALILNDNEI 
Sbjct: 61  SCVNLKWLSVVENKLESLEGIQGLTKLTVLNAGKNKLKSIDQVSSLVGLRALILNDNEIT 120

Query: 121 SICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTL 166
           SICK DQ+KELNTL             L  NP+ +  +   KVK++
Sbjct: 121 SICKFDQLKELNTLV------------LSKNPIRKIGEALMKVKSI 154

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255635076|gb|ACU17896.1| unknown [Glycine max]

 Score =  191 bits (485), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 101/166 (60%), Positives = 126/166 (75%), Gaps = 12/166 (7%)

Query: 1   MTRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLK 60
           M RLS+ Q+LKDN   DP S+ +L LTHKALSD++ L +F NLE+LDL  NNLTSLEGL+
Sbjct: 1   MARLSSDQVLKDNNAADPTSVTTLYLTHKALSDITFLANFINLEKLDLKLNNLTSLEGLR 60

Query: 61  HCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIV 120
            CVNLKWLS+V+NKL+SL+GI+GL+K TVLN GKNKL+S+D V SVVSLRALILN+NEI 
Sbjct: 61  SCVNLKWLSVVENKLESLEGIQGLTKLTVLNAGKNKLKSIDQVMSVVSLRALILNENEIS 120

Query: 121 SICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTL 166
           SICKLDQ+K+LNTL             L  NP+ +  +   KVK++
Sbjct: 121 SICKLDQLKDLNTLV------------LSKNPIRKIGEALMKVKSI 154

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	406
TAIR|locus:2176397	452	AT5G22320 [Arabidopsis thalian	0.330	0.296	0.679	5.4e-53
ASPGD|ASPL0000056701	355	AN10088 [Emericella nidulans (	0.293	0.335	0.352	2.5e-13
ZFIN|ZDB-GENE-051113-288	345	ppp1r7 "protein phosphatase 1,	0.352	0.414	0.269	2e-12
UNIPROTKB|Q723V1	589	LMOf2365_0374 "Internalin" [Li	0.337	0.232	0.312	1.7e-11
RGD|1308169	360	Ppp1r7 "protein phosphatase 1,	0.325	0.366	0.300	2.7e-11
UNIPROTKB|Q15435	360	PPP1R7 "Protein phosphatase 1	0.349	0.394	0.271	1e-10
UNIPROTKB|Q3T0W4	360	PPP1R7 "Protein phosphatase 1	0.293	0.330	0.310	1.4e-10
UNIPROTKB|E2RI69	522	LRRC48 "Uncharacterized protei	0.362	0.281	0.290	1.4e-10
MGI|MGI:1913635	361	Ppp1r7 "protein phosphatase 1,	0.293	0.329	0.302	1.8e-10
FB|FBgn0028992	326	sds22 "sds22" [Drosophila mela	0.283	0.352	0.321	2.2e-10

TAIR|locus:2176397 AT5G22320 [Arabidopsis thaliana (taxid:3702)]

 Score = 475 (172.3 bits), Expect = 5.4e-53, Sum P(2) = 5.4e-53
 Identities = 91/134 (67%), Positives = 115/134 (85%)

Query:     1 MTRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLK 60
             M  L+ +Q+LK+ KT DP+S+K L+L HKAL+DVSCL+ F NLE+LDL  NNLT L+GLK
Sbjct:     1 MNSLTVEQVLKEKKTNDPDSVKELNLGHKALTDVSCLSKFKNLEKLDLRFNNLTDLQGLK 60

Query:    61 HCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIV 120
              CVNLKWLS+V+NKLQSL GIE L+K TVLN GKNKL+SM++++S+V+LRALILNDNEI 
Sbjct:    61 SCVNLKWLSVVENKLQSLNGIEALTKLTVLNAGKNKLKSMNEISSLVNLRALILNDNEIS 120

Query:   121 SICKLDQMKELNTL 134
             SICKLD +K+LN+L
Sbjct:   121 SICKLDLLKDLNSL 134

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

ASPGD|ASPL0000056701 AN10088 [Emericella nidulans (taxid:162425)]

 Score = 196 (74.1 bits), Expect = 2.5e-13, P = 2.5e-13
 Identities = 42/119 (35%), Positives = 70/119 (58%)

Query:    20 SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK 79
             +++ L L    +S +  L DF+NL  LDLS N L  ++ + H V LK L  VQNK+  ++
Sbjct:   101 TLQELDLYDNLISHLKGLDDFHNLTSLDLSFNKLKHIKNISHLVKLKDLYFVQNKISKIE 160

Query:    80 GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS 138
             G+EGL++   L +G NK+R ++++ ++ +L  L L  N+I  +  LD +  L  L + S
Sbjct:   161 GLEGLTEIKNLELGANKIREIENLETLSALEELWLGKNKITEMKNLDALTNLRILSIQS 219

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0071862 "protein phosphatase type 1 activator activity" evidence=IEA

GO:0030071 "regulation of mitotic metaphase/anaphase transition" evidence=IEA

ZFIN|ZDB-GENE-051113-288 ppp1r7 "protein phosphatase 1, regulatory (inhibitor) subunit 7" [Danio rerio (taxid:7955)]

 Score = 188 (71.2 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 41/152 (26%), Positives = 88/152 (57%)

Query:    19 NSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSL 78
             +S++SL L    ++ +  L   +NL  L + SN +T LEGL++ VNL+ L L  N ++ +
Sbjct:   193 SSLESLFLGTNKITQLQNLDGLHNLTVLSIQSNRITKLEGLQNLVNLRELYLSHNGIEVM 252

Query:    79 KGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS 138
             +G+E   K + L++  N+++ +++++ +  L+   +NDN+I +   LD++K  N  G+++
Sbjct:   253 EGLENNKKLSTLDIAANRIKKIENISHLTDLKEFWMNDNQIENWADLDELK--NAKGLET 310

Query:   139 YFFXXXXXXXQGNPVAEYDKLAKKVKTLLPNL 170
              +        + NP+ +  +  +K+   LP++
Sbjct:   311 VYL-------ERNPLQKDPQYRRKIMLALPSV 335

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q723V1 LMOf2365_0374 "Internalin" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]

 Score = 185 (70.2 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 45/144 (31%), Positives = 79/144 (54%)

Query:     1 MTRLSTQQILKDNKTCDPNSIKSLS------LTHKALSDVSCLTDFNNLERLDLSSNNLT 54
             +T L T  IL  N+  D + +K L+      L+   +SD+S L++  NL+ LD++   +T
Sbjct:    92 LTNLGTL-ILTGNQVSDISPLKGLTNLTMLQLSGNPISDISALSNLKNLQALDINDAQVT 150

Query:    55 SLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALIL 114
              +  L    NLK L L  N+L++L G+  L +   LNV  NKL ++D++ ++ +L  L  
Sbjct:   151 DITPLSGLTNLKGLGLYNNQLENLSGVNSLHQLRSLNVSNNKLTNLDELQALSNLSVLYA 210

Query:   115 NDNEIVSICKLDQMKELNTLGMDS 138
             N+N+I ++  L  +  L  L + +
Sbjct:   211 NENQINNLQGLSNLNNLFLLDLSA 234

GO:0003674 "molecular_function" evidence=ND

GO:0009405 "pathogenesis" evidence=ISS

GO:0030260 "entry into host cell" evidence=ISS

RGD|1308169 Ppp1r7 "protein phosphatase 1, regulatory subunit 7" [Rattus norvegicus (taxid:10116)]

 Score = 179 (68.1 bits), Expect = 2.7e-11, P = 2.7e-11
 Identities = 40/133 (30%), Positives = 71/133 (53%)

Query:     7 QQILKDNKTCDP-NSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNL 65
             Q ++K  +  D   S++ L L    +  +  L     LE LD+S N L ++EG+     L
Sbjct:   107 QNLIKCIENLDELQSLRELDLYDNQIKKIENLEALTELEVLDISFNLLRNIEGIDKLTQL 166

Query:    66 KWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKL 125
             K L LV NK+  ++ I  L +  +L +G N++R+++++ ++ +L +L L  N+I  +  L
Sbjct:   167 KKLFLVNNKINKIENISTLQQLQMLELGSNRIRAIENIDTLTNLESLFLGKNKITKLQNL 226

Query:   126 DQMKELNTLGMDS 138
             D +  L  L M S
Sbjct:   227 DALSNLTVLSMQS 239

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q15435 PPP1R7 "Protein phosphatase 1 regulatory subunit 7" [Homo sapiens (taxid:9606)]

 Score = 174 (66.3 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 41/151 (27%), Positives = 86/151 (56%)

Query:    20 SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK 79
             +++SL L    ++ +  L    NL  L + SN LT +EGL++ VNL+ L L  N ++ ++
Sbjct:   209 NLESLFLGKNKITKLQNLDALTNLTVLSMQSNRLTKIEGLQNLVNLRELYLSHNGIEVIE 268

Query:    80 GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSY 139
             G+E  +K T+L++  N+++ +++++ +  L+   +NDN + S   LD++K   +L  ++ 
Sbjct:   269 GLENNNKLTMLDIASNRIKKIENISHLTELQEFWMNDNLLESWSDLDELKGARSL--ETV 326

Query:   140 FFXXXXXXXQGNPVAEYDKLAKKVKTLLPNL 170
             +        + NP+ +  +  +KV   LP++
Sbjct:   327 YL-------ERNPLQKDPQYRRKVMLALPSV 350

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0030234 "enzyme regulator activity" evidence=NAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0008599 "protein phosphatase type 1 regulator activity" evidence=TAS

GO:0050790 "regulation of catalytic activity" evidence=NAS

UNIPROTKB|Q3T0W4 PPP1R7 "Protein phosphatase 1 regulatory subunit 7" [Bos taurus (taxid:9913)]

 Score = 173 (66.0 bits), Expect = 1.4e-10, P = 1.4e-10
 Identities = 37/119 (31%), Positives = 65/119 (54%)

Query:    20 SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK 79
             S++ L L    +  +  L     LE LD+S N L ++EG+     LK L LV NK+  ++
Sbjct:   121 SLRELDLYDNQIRRIENLDALTELEVLDISFNLLRNIEGIDKLTRLKKLFLVNNKINKIE 180

Query:    80 GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS 138
              I  L +  +L +G N++R+++++ ++ +L +L L  N+I  +  LD +  L  L M S
Sbjct:   181 NISSLHQLQMLELGSNRIRAIENIDTLTNLESLFLGKNKITKLQNLDALTNLTVLSMQS 239

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E2RI69 LRRC48 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 176 (67.0 bits), Expect = 1.4e-10, P = 1.4e-10
 Identities = 47/162 (29%), Positives = 85/162 (52%)

Query:    21 IKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG 80
             + SL L  + +  +  L +F NL +L L +N +  +EGL+  V+L WL L  N +++++G
Sbjct:    45 VLSLRLDFQNILRIDSLWEFENLTKLQLDNNIIEKIEGLEQLVHLVWLDLSFNNIEAIEG 104

Query:    81 IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEI---VSICKLDQMKELNTLGMD 137
             ++ L     L++  N++  +D + ++V L+ L L +N+I   ++I  L + K+L TL + 
Sbjct:   105 LDTLVNLEDLSLFNNRISKIDSLDALVKLQVLSLGNNQIGNMMNIIYLRRFKDLRTLSLS 164

Query:   138 SYFFXXXXXXXQGNPVAEYDKLAKKVKTLLPNLCIFNARPID 179
                         GNP+AE +     V   LP+L   +   ID
Sbjct:   165 ------------GNPIAESEDYKMFVCAYLPDLVYLDFHRID 194

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:1913635 Ppp1r7 "protein phosphatase 1, regulatory (inhibitor) subunit 7" [Mus musculus (taxid:10090)]

 Score = 172 (65.6 bits), Expect = 1.8e-10, P = 1.8e-10
 Identities = 36/119 (30%), Positives = 65/119 (54%)

Query:    20 SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK 79
             S++ L L    +  +  L     LE LD+S N L ++EG+     LK L LV NK+  ++
Sbjct:   122 SLRELDLYDNQIKKIENLEALTELEVLDISFNMLRNIEGIDKLTQLKKLFLVNNKINKIE 181

Query:    80 GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS 138
              I  L +  +L +G N++R+++++ ++ +L +L L  N+I  +  LD +  L  L + S
Sbjct:   182 NISNLHQLQMLELGSNRIRAIENIDTLTNLESLFLGKNKITKLQNLDALTNLTVLSVQS 240

GO:0005634 "nucleus" evidence=IEA

FB|FBgn0028992 sds22 "sds22" [Drosophila melanogaster (taxid:7227)]

 Score = 170 (64.9 bits), Expect = 2.2e-10, P = 2.2e-10
 Identities = 37/115 (32%), Positives = 65/115 (56%)

Query:    24 LSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEG 83
             L L    ++ +  L D  +LE LD+S N LT +E L   V L+ +  V N++  ++ ++ 
Sbjct:    88 LELYDNQITKIENLDDLPHLEVLDISFNRLTKIENLDKLVKLEKVYFVSNRITQIENLDM 147

Query:    84 LSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS 138
             L+  T+L +G NKL+ ++++  +V+LR L L  N+I  I  LD +  L  L + +
Sbjct:   148 LTNLTMLELGDNKLKKIENIEMLVNLRQLFLGKNKIAKIENLDTLVNLEILSLQA 202

GO:0008599 "protein phosphatase type 1 regulator activity" evidence=ISS

GO:0016336 "establishment or maintenance of polarity of larval imaginal disc epithelium" evidence=IMP

GO:0016334 "establishment or maintenance of polarity of follicular epithelium" evidence=IMP

GO:0008285 "negative regulation of cell proliferation" evidence=IGI

GO:0000164 "protein phosphatase type 1 complex" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00660138	hypothetical protein (475 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.29890001	hypothetical protein (424 aa)			•						0.460
	gw1.298.28.1	hypothetical protein (642 aa)			•						0.456
	fgenesh4_pg.C_LG_XVI001182	hypothetical protein (328 aa)			•						0.443
	eugene3.01970033	annotation not avaliable (438 aa)			•						0.442
	eugene3.00150629	hypothetical protein (516 aa)			•						0.427
	eugene3.00410224	hypothetical protein (478 aa)			•						0.425
	gw1.V.1354.1	hypothetical protein (414 aa)			•						0.423
	fgenesh4_pg.C_scaffold_18994000001	hypothetical protein (346 aa)			•						0.418
	fgenesh4_pg.C_scaffold_184000015	hypothetical protein (444 aa)			•						0.418
	fgenesh4_pg.C_scaffold_166000065	hypothetical protein (415 aa)			•						0.418

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	406
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	4e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-05
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	9e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 42.9 bits (102), Expect = 4e-06
 Identities = 18/42 (42%), Positives = 24/42 (57%)

Query: 42 NLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEG 83
          NLE LDLS+N +T L  L +  NL+ L L  NK+  L  +  
Sbjct: 2  NLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSPLSN 43

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.6 bits (96), Expect = 5e-05
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 20 SIKSLSLTHKALSDV--SCLTDFNNLERLDLSSNNLTSL--EGLKHCVNLKWLSLVQNKL 75
          ++KSL L++  L+ +         NL+ LDLS NNLTS+  E      +L+ L L  N L
Sbjct: 1  NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 36.3 bits (85), Expect = 9e-04
 Identities = 15/42 (35%), Positives = 28/42 (66%)

Query: 20 SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKH 61
          ++++L L++  ++D+  L++  NLE LDLS N +T L  L +
Sbjct: 2  NLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSPLSN 43

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 40/193 (20%), Positives = 70/193 (36%), Gaps = 13/193 (6%)

Query: 10  LKDNKTCDPNSIKSLSLTHKALSDV-SCLTDFNNLERLDLSSNNLTSLEGLKH-CVNLKW 67
           +        +++K L L+   +  + S L +  NL+ LDLS N+L+ L  L     NL  
Sbjct: 131 IPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190

Query: 68  LSLVQNKLQSLKG-IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLD 126
           L L  NK+  L   IE LS    L++  N +  +             L++ + +S  +L 
Sbjct: 191 LDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSS----------LSNLKNLSGLELS 240

Query: 127 QMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPIDRITKNEK 186
             K  +         NL  L+L  N ++    L         +L   +      +     
Sbjct: 241 NNKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLIALLL 300

Query: 187 DNIVDKVNDSSNN 199
             +   +N     
Sbjct: 301 LLLELLLNLLLTL 313

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 42 NLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSL--KGIEGLSKPTVLNVGKNKL 97
          NL+ LDLS+N LT +     K   NLK L L  N L S+  +   GL     L++  N L
Sbjct: 1  NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	406
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.81
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.63
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.59
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.57
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.56
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.47
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.46
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.44
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.41
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.3
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.29
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.27
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	99.27
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.25
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.21
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.19
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	99.17
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.16
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.16
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.14
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.14
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.1
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.1
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.07
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.05
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.04
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.03
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.03
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.03
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.01
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.0
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.97
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.94
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.92
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.9
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.89
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.79
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.63
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.6
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.58
KOG2123	388	consensus Uncharacterized conserved protein [Funct	98.51
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.5
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	98.48
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.44
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.43
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.42
PLN03150	623	hypothetical protein; Provisional	98.29
KOG2123	388	consensus Uncharacterized conserved protein [Funct	98.28
PLN03150	623	hypothetical protein; Provisional	98.24
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.21
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.19
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.07
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.04
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.01
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.97
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.88
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.81
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.74
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.64
PRK15386	426	type III secretion protein GogB; Provisional	97.49
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.46
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.44
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.39
PRK15386	426	type III secretion protein GogB; Provisional	97.19
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.75
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.4
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	96.23
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.25
KOG1947	482	consensus Leucine rich repeat proteins, some prote	93.23
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.11
KOG4308	478	consensus LRR-containing protein [Function unknown	92.43
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.25
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.87
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.85
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	88.95
KOG1947	482	consensus Leucine rich repeat proteins, some prote	88.66
KOG4308	478	consensus LRR-containing protein [Function unknown	88.22
KOG4341	483	consensus F-box protein containing LRR [General fu	87.23
smart00370	26	LRR Leucine-rich repeats, outliers.	86.76
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	86.76
KOG3864	221	consensus Uncharacterized conserved protein [Funct	85.89
smart00370	26	LRR Leucine-rich repeats, outliers.	85.57
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	85.57
KOG4341	483	consensus F-box protein containing LRR [General fu	83.51
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	82.58
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	82.0

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.81  E-value=1.5e-20  Score=169.38  Aligned_cols=160  Identities=27%  Similarity=0.453  Sum_probs=57.4

Q ss_pred             CCccccccccCCCCCCCCCCccEEEeeCCCCCCCCCCC-CCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCC
Q 015448            1 MTRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLT-DFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK   79 (406)
Q Consensus         1 m~~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~-~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~   79 (406)
                      ||+|+.+-|.++....++..+++|+|.+|.|+.+..++ .+.+|+.|+|++|.|+.++++..++                
T Consensus         1 ~~~lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~----------------   64 (175)
T PF14580_consen    1 MVRLTANMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLP----------------   64 (175)
T ss_dssp             -----------------------------------S--TT-TT--EEE-TTS--S--TT----T----------------
T ss_pred             CccccccccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChh----------------
Confidence            78888888887777777777777777777777666554 3555555555555555555554444                


Q ss_pred             CCCCCCCCcEEEcCCCCCCCCc-CC-CCCCCCCEEEccCCccCCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCch
Q 015448           80 GIEGLSKPTVLNVGKNKLRSMD-DV-TSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYD  157 (406)
Q Consensus        80 ~l~~l~~L~~L~Ls~N~i~~l~-~l-~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~  157 (406)
                            .|++|++++|.|+++. .+ ..+++|+.|+|++|+|.++..+..+.         .+++|+.|+|.+||++..+
T Consensus        65 ------~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~---------~l~~L~~L~L~~NPv~~~~  129 (175)
T PF14580_consen   65 ------RLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLS---------SLPKLRVLSLEGNPVCEKK  129 (175)
T ss_dssp             ------T--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGG---------G-TT--EEE-TT-GGGGST
T ss_pred             ------hhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHH---------cCCCcceeeccCCcccchh
Confidence                  4555555555555543 23 24566667777777766665544443         5679999999999999999


Q ss_pred             hHHHHHHhcCCCcccccCcCCChhhhhhhhhhhc
Q 015448          158 KLAKKVKTLLPNLCIFNARPIDRITKNEKDNIVD  191 (406)
Q Consensus       158 ~~~~~~~~~lp~L~~Ld~~~~~~~~~~~~~~~l~  191 (406)
                      .|+.+++..+|+|+.||+.+++..++..+..++.
T Consensus       130 ~YR~~vi~~lP~Lk~LD~~~V~~~ER~~A~~~f~  163 (175)
T PF14580_consen  130 NYRLFVIYKLPSLKVLDGQDVTEEERQEAEKLFK  163 (175)
T ss_dssp             THHHHHHHH-TT-SEETTEETTS-B---------
T ss_pred             hHHHHHHHHcChhheeCCEEccHHHhcccccccc
Confidence            9999999999999999999999999998887775

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.63  E-value=2.7e-17  Score=168.01  Aligned_cols=54  Identities=15%  Similarity=0.232  Sum_probs=37.8

Q ss_pred             HhhhhhcccCcccccCCcccchhhhhhhcccCCCCCCC---C---CcchhccccccccCc
Q 015448          314 QKKRSKEKQGELDIIDNGETAFSELFSANIAGNPGFDG---D---NNMVNEASKFNSVDG  367 (406)
Q Consensus       314 ~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~  367 (406)
                      .+-.+++..-|...++-+.+.|.++|--..|.-|+.--   +   -...++|.-+++..|
T Consensus       468 ~~~es~k~~rWd~~lEKprlDYS~fF~eDvGqlpGltiWeIENF~P~~~eEafHGkFYea  527 (1255)
T KOG0444|consen  468 RQLESKKAVRWDKNLEKPRLDYSDFFDEDVGQLPGLTIWEIENFYPSIMEEAFHGKFYEA  527 (1255)
T ss_pred             cCccccCccchhhcCccccCcHHHhcccccCCCCCceEEeehhhhhHHHHHHhccceecc
Confidence            33445666778888899999999999988887776532   1   244566666666555

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.59  E-value=1.6e-17  Score=146.52  Aligned_cols=149  Identities=26%  Similarity=0.390  Sum_probs=134.5

Q ss_pred             CCCCCCCCCCccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCCC-CCCCCCCcEEEecCCCCCCCC-CCCCCCCC
Q 015448           11 KDNKTCDPNSIKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLEG-LKHCVNLKWLSLVQNKLQSLK-GIEGLSKP   87 (406)
Q Consensus        11 ~~~~~~~~~~L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~~-l~~L~~L~~L~Ls~N~l~~l~-~l~~l~~L   87 (406)
                      .+..+.++++++.|.|++|.++.+| .+..+.+|++|+|++|+|+.+|. ++.++.|+.|+++-|++..+| +|+.++.|
T Consensus        25 ~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~l  104 (264)
T KOG0617|consen   25 ELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPAL  104 (264)
T ss_pred             hcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchh
Confidence            3445566889999999999999987 88999999999999999999985 999999999999999999999 89999999


Q ss_pred             cEEEcCCCCCCC--Cc-CCCCCCCCCEEEccCCccCCccc-cCCCCCCcEeeCC-----------CCCCCCCEEEcCCCC
Q 015448           88 TVLNVGKNKLRS--MD-DVTSVVSLRALILNDNEIVSICK-LDQMKELNTLGMD-----------SYFFNLNNLNLQGNP  152 (406)
Q Consensus        88 ~~L~Ls~N~i~~--l~-~l~~l~~L~~L~Ls~N~i~~l~~-l~~L~~L~~L~Ls-----------~~l~~L~~L~Ls~N~  152 (406)
                      ++|+|.+|.+..  +| .|..+..|+.|.|++|.+.-+|. ++.+++|+.|.+.           +.+..|+.|.+.+|.
T Consensus       105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             hhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce
Confidence            999999999976  67 48889999999999999999885 9999999999887           677889999999999


Q ss_pred             CCCchhH
Q 015448          153 VAEYDKL  159 (406)
Q Consensus       153 i~~~~~~  159 (406)
                      ++-+++.
T Consensus       185 l~vlppe  191 (264)
T KOG0617|consen  185 LTVLPPE  191 (264)
T ss_pred             eeecChh
Confidence            9888763

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.57  E-value=1.2e-15  Score=155.27  Aligned_cols=159  Identities=25%  Similarity=0.375  Sum_probs=128.3

Q ss_pred             CccccccccCCCCCCCC--CCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCC
Q 015448            2 TRLSTQQILKDNKTCDP--NSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKL   75 (406)
Q Consensus         2 ~~Ls~n~i~~~~~~~~~--~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l   75 (406)
                      ++||.|.|..+...+.+  .+|..|+|++|.|+.+.  +|..+.+|..|.|+.|+|+.+|.  |.+|++|+.|+|..|.|
T Consensus       154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i  233 (873)
T KOG4194|consen  154 LDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI  233 (873)
T ss_pred             hhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccce
Confidence            56788888777654443  57888888888888875  78888888888888888888874  77888888888888888


Q ss_pred             CCCC--CCCCCCCCcEEEcCCCCCCCCc--CCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC------------
Q 015448           76 QSLK--GIEGLSKPTVLNVGKNKLRSMD--DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD------------  137 (406)
Q Consensus        76 ~~l~--~l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls------------  137 (406)
                      .-+.  .|.+|++|+.|.|..|.|..+.  .|..|..+++|+|+.|+++.+..  +-.|+.|+.|+|+            
T Consensus       234 rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W  313 (873)
T KOG4194|consen  234 RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW  313 (873)
T ss_pred             eeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh
Confidence            8665  4788888888888888888875  37778888899999998888763  7788888888888            


Q ss_pred             CCCCCCCEEEcCCCCCCCchhHH
Q 015448          138 SYFFNLNNLNLQGNPVAEYDKLA  160 (406)
Q Consensus       138 ~~l~~L~~L~Ls~N~i~~~~~~~  160 (406)
                      ..+++|..|+|+.|.|+.++.-.
T Consensus       314 sftqkL~~LdLs~N~i~~l~~~s  336 (873)
T KOG4194|consen  314 SFTQKLKELDLSSNRITRLDEGS  336 (873)
T ss_pred             hhcccceeEeccccccccCChhH
Confidence            67888999999999888876543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.56  E-value=5.4e-16  Score=157.69  Aligned_cols=171  Identities=22%  Similarity=0.308  Sum_probs=110.3

Q ss_pred             CccccccccCCC--CCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCC--------------------
Q 015448            2 TRLSTQQILKDN--KTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE--------------------   57 (406)
Q Consensus         2 ~~Ls~n~i~~~~--~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~--------------------   57 (406)
                      +.|+.|.|+++.  .+..+.+|.+|-|+.|.|+.+|  .|..++.|+.|+|..|.|.-..                    
T Consensus       178 L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I  257 (873)
T KOG4194|consen  178 LNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDI  257 (873)
T ss_pred             EeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCc
Confidence            356777777774  3445677777888888887776  5666777777777766654321                    


Q ss_pred             ------CCCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCCCCCCCCc--CCCCCCCCCEEEccCCccCCccc--c
Q 015448           58 ------GLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGKNKLRSMD--DVTSVVSLRALILNDNEIVSICK--L  125 (406)
Q Consensus        58 ------~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l  125 (406)
                            .|..|.++++|+|..|+++.+.  .+.+|+.|+.|+||+|.|..+.  .|...+.|..|+|++|+|+.++.  |
T Consensus       258 ~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf  337 (873)
T KOG4194|consen  258 SKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSF  337 (873)
T ss_pred             ccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHH
Confidence                  1334555556666666665554  3556666666666666666642  46666666666666666666543  4


Q ss_pred             CCCCC------------------------CcEeeCC---------------CCCCCCCEEEcCCCCCCCchhHHHHHHhc
Q 015448          126 DQMKE------------------------LNTLGMD---------------SYFFNLNNLNLQGNPVAEYDKLAKKVKTL  166 (406)
Q Consensus       126 ~~L~~------------------------L~~L~Ls---------------~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~  166 (406)
                      ..|..                        |+.|||+               .+|+.|+.|.|.||+|..++.-   .+..
T Consensus       338 ~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~kr---Afsg  414 (873)
T KOG4194|consen  338 RVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKR---AFSG  414 (873)
T ss_pred             HHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchh---hhcc
Confidence            44444                        4444444               5688888888888888887753   4677


Q ss_pred             CCCcccccC
Q 015448          167 LPNLCIFNA  175 (406)
Q Consensus       167 lp~L~~Ld~  175 (406)
                      ++.|+.||.
T Consensus       415 l~~LE~LdL  423 (873)
T KOG4194|consen  415 LEALEHLDL  423 (873)
T ss_pred             CcccceecC
Confidence            888887764

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.47  E-value=3.4e-15  Score=152.83  Aligned_cols=134  Identities=22%  Similarity=0.353  Sum_probs=95.9

Q ss_pred             cccccccCCC-CCCCCCCccEEEeeCCCCC--CCC-CCCCCCCCcEEEccCCCCCCCC-CCCCCCCCcEEEecCCCCCCC
Q 015448            4 LSTQQILKDN-KTCDPNSIKSLSLTHKALS--DVS-CLTDFNNLERLDLSSNNLTSLE-GLKHCVNLKWLSLVQNKLQSL   78 (406)
Q Consensus         4 Ls~n~i~~~~-~~~~~~~L~~L~Ls~n~l~--~i~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~L~~L~~L~Ls~N~l~~l   78 (406)
                      +++|++..+. .+..++.|+.+.+.+|++.  ++| .+-.+.-|++||||+|+++..| .+..-.++-+|+||+|+|.+|
T Consensus        62 ~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetI  141 (1255)
T KOG0444|consen   62 MAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETI  141 (1255)
T ss_pred             hhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccC
Confidence            4556666664 4566778888888888774  455 5667778888888888888876 377777888888888888888


Q ss_pred             CC--CCCCCCCcEEEcCCCCCCCCc-CCCCCCCCCEEEccCCccCCc--cccCCCCCCcEeeCC
Q 015448           79 KG--IEGLSKPTVLNVGKNKLRSMD-DVTSVVSLRALILNDNEIVSI--CKLDQMKELNTLGMD  137 (406)
Q Consensus        79 ~~--l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~N~i~~l--~~l~~L~~L~~L~Ls  137 (406)
                      |.  +-+|+-|-.|+||+|++..+| .+..+..|++|.|++|++..+  ..+..+++|++|.++
T Consensus       142 Pn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms  205 (1255)
T KOG0444|consen  142 PNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMS  205 (1255)
T ss_pred             CchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcc
Confidence            83  667777888888888888776 477777888888888866432  234555555555555

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.46  E-value=2.6e-13  Score=152.28  Aligned_cols=122  Identities=25%  Similarity=0.383  Sum_probs=62.8

Q ss_pred             CCCCCccEEEeeCCCCCC-CC-CCCCCCCCcEEEccCCCCCC-CC-CCCCCCCCcEEEecCCCCC-CCC-CCCCCCCCcE
Q 015448           16 CDPNSIKSLSLTHKALSD-VS-CLTDFNNLERLDLSSNNLTS-LE-GLKHCVNLKWLSLVQNKLQ-SLK-GIEGLSKPTV   89 (406)
Q Consensus        16 ~~~~~L~~L~Ls~n~l~~-i~-~l~~l~~L~~L~Ls~N~l~~-l~-~l~~L~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~   89 (406)
                      ..+++|++|+|++|.++. ++ .+..+++|++|+|++|.+.. +| .+.++++|++|+|++|.+. .+| .+..+++|++
T Consensus       137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  216 (968)
T PLN00113        137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW  216 (968)
T ss_pred             cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence            344555555555555543 23 45556666666666665543 23 2555566666666666554 233 3555555555


Q ss_pred             EEcCCCCCCC-Cc-CCCCCCCCCEEEccCCccCC-cc-ccCCCCCCcEeeCC
Q 015448           90 LNVGKNKLRS-MD-DVTSVVSLRALILNDNEIVS-IC-KLDQMKELNTLGMD  137 (406)
Q Consensus        90 L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~L~~L~~L~Ls  137 (406)
                      |+|++|.+.. +| .+..+++|++|+|++|.++. ++ .+..+++|++|+|+
T Consensus       217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  268 (968)
T PLN00113        217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLY  268 (968)
T ss_pred             EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECc
Confidence            5555555543 33 34555555555555555542 22 24444555555444

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.44  E-value=4.1e-13  Score=150.75  Aligned_cols=134  Identities=25%  Similarity=0.295  Sum_probs=66.4

Q ss_pred             CCCCcEEEccCCCCCC-CC-CCCCCCCCcEEEecCCCCC-CCC-CCCCCCCCcEEEcCCCCCCC-Cc-CCCCCCCCCEEE
Q 015448           40 FNNLERLDLSSNNLTS-LE-GLKHCVNLKWLSLVQNKLQ-SLK-GIEGLSKPTVLNVGKNKLRS-MD-DVTSVVSLRALI  113 (406)
Q Consensus        40 l~~L~~L~Ls~N~l~~-l~-~l~~L~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~  113 (406)
                      +++|++|+|++|.++. ++ .+..+++|++|+|++|.+. .+| .+..+++|++|+|++|.+.. +| .+..+++|++|+
T Consensus       139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  218 (968)
T PLN00113        139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY  218 (968)
T ss_pred             cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence            3444444444444432 22 2444555555555555544 333 34555555555555555443 23 345555555555


Q ss_pred             ccCCccCC-cc-ccCCCCCCcEeeCC------------CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCc
Q 015448          114 LNDNEIVS-IC-KLDQMKELNTLGMD------------SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNAR  176 (406)
Q Consensus       114 Ls~N~i~~-l~-~l~~L~~L~~L~Ls------------~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~  176 (406)
                      |++|.++. ++ .+..+++|++|+|+            ..+++|+.|+|++|.+....+.   .+..+++|+.|+..
T Consensus       219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~Ls  292 (968)
T PLN00113        219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP---SIFSLQKLISLDLS  292 (968)
T ss_pred             CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch---hHhhccCcCEEECc
Confidence            55555542 22 25555666666555            3455666666666666433211   23455666665543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.41  E-value=1.6e-14  Score=137.18  Aligned_cols=140  Identities=24%  Similarity=0.348  Sum_probs=120.5

Q ss_pred             CCccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCC-CCCCCCcEEEcCCCC
Q 015448           19 NSIKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGI-EGLSKPTVLNVGKNK   96 (406)
Q Consensus        19 ~~L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l-~~l~~L~~L~Ls~N~   96 (406)
                      ..|++|+|++|.|+.+. ++.-+|.++.|++|+|.|..+..+..|++|+.|+|++|.++.+.++ ..+-++++|.|+.|.
T Consensus       284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~  363 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK  363 (490)
T ss_pred             hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh
Confidence            46888999999999886 7777899999999999999998899999999999999999988863 456788999999999


Q ss_pred             CCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhHHHHHHhcC
Q 015448           97 LRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLL  167 (406)
Q Consensus        97 i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~l  167 (406)
                      |.++.++..+.+|..|++++|+|..+..+...         +.+|.|.+|.|.+||+..++.|+..++..+
T Consensus       364 iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~I---------G~LPCLE~l~L~~NPl~~~vdYRTKVLa~F  425 (490)
T KOG1259|consen  364 IETLSGLRKLYSLVNLDLSSNQIEELDEVNHI---------GNLPCLETLRLTGNPLAGSVDYRTKVLARF  425 (490)
T ss_pred             HhhhhhhHhhhhheeccccccchhhHHHhccc---------ccccHHHHHhhcCCCccccchHHHHHHHHH
Confidence            99999999999999999999999887664444         356788899999999999999998776655

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.30  E-value=8.3e-12  Score=135.23  Aligned_cols=149  Identities=25%  Similarity=0.261  Sum_probs=70.6

Q ss_pred             CccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCCCCCCCcEEEcCCCCCCC
Q 015448           20 SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRS   99 (406)
Q Consensus        20 ~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~i~~   99 (406)
                      +|+.|+|++|.|+.+|.  .+++|+.|+|++|.|+.+|.+  ..+|+.|++++|.|+.+|.+.  .+|+.|+|++|.|+.
T Consensus       283 ~L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~l--p~~L~~L~Ls~N~L~~LP~lp--~~Lq~LdLS~N~Ls~  356 (788)
T PRK15387        283 GLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLASLPAL--PSELCKLWAYNNQLTSLPTLP--SGLQELSVSDNQLAS  356 (788)
T ss_pred             hcCEEECcCCccccccc--cccccceeECCCCccccCCCC--cccccccccccCccccccccc--cccceEecCCCccCC
Confidence            44455555555555443  135677777777777666532  123444444444444444211  244444444444444


Q ss_pred             CcCCC------------------CCCCCCEEEccCCccCCccccCCCCCCcEeeCC--------CCCCCCCEEEcCCCCC
Q 015448          100 MDDVT------------------SVVSLRALILNDNEIVSICKLDQMKELNTLGMD--------SYFFNLNNLNLQGNPV  153 (406)
Q Consensus       100 l~~l~------------------~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls--------~~l~~L~~L~Ls~N~i  153 (406)
                      +|.+.                  .+.+|+.|+|++|.|+.++.+  ..+|..|+|+        ..+.+|+.|+|++|.|
T Consensus       357 LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l--~s~L~~LdLS~N~LssIP~l~~~L~~L~Ls~NqL  434 (788)
T PRK15387        357 LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL--PSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQL  434 (788)
T ss_pred             CCCCCcccceehhhccccccCcccccccceEEecCCcccCCCCc--ccCCCEEEccCCcCCCCCcchhhhhhhhhccCcc
Confidence            43211                  113455555555555554432  2344555554        1112455556666666


Q ss_pred             CCchhHHHHHHhcCCCccccc--CcCCCh
Q 015448          154 AEYDKLAKKVKTLLPNLCIFN--ARPIDR  180 (406)
Q Consensus       154 ~~~~~~~~~~~~~lp~L~~Ld--~~~~~~  180 (406)
                      +.+|.    .+..+++|..|+  +++++.
T Consensus       435 t~LP~----sl~~L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        435 TRLPE----SLIHLSSETTVNLEGNPLSE  459 (788)
T ss_pred             cccCh----HHhhccCCCeEECCCCCCCc
Confidence            55543    134456666444  444443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.29  E-value=9.6e-14  Score=122.72  Aligned_cols=126  Identities=30%  Similarity=0.400  Sum_probs=111.1

Q ss_pred             CCCCCCCCCCCcEEEccCCCCCCCC-CCCCCCCCcEEEecCCCCCCCC-CCCCCCCCcEEEcCCCCCCCCc-CCCCCCCC
Q 015448           33 DVSCLTDFNNLERLDLSSNNLTSLE-GLKHCVNLKWLSLVQNKLQSLK-GIEGLSKPTVLNVGKNKLRSMD-DVTSVVSL  109 (406)
Q Consensus        33 ~i~~l~~l~~L~~L~Ls~N~l~~l~-~l~~L~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L  109 (406)
                      .++.+-.+.+++.|.||+|.++.+| .+..+.+|+.|++.+|+|..+| .++.+++|+.|+++-|++..+| +|+.++.|
T Consensus        25 ~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~l  104 (264)
T KOG0617|consen   25 ELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPAL  104 (264)
T ss_pred             hcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchh
Confidence            3456677889999999999999986 5999999999999999999999 7999999999999999999988 79999999


Q ss_pred             CEEEccCCccCC--ccc-cCCCCCCcEeeCC-----------CCCCCCCEEEcCCCCCCCchh
Q 015448          110 RALILNDNEIVS--ICK-LDQMKELNTLGMD-----------SYFFNLNNLNLQGNPVAEYDK  158 (406)
Q Consensus       110 ~~L~Ls~N~i~~--l~~-l~~L~~L~~L~Ls-----------~~l~~L~~L~Ls~N~i~~~~~  158 (406)
                      +.|+|++|++..  +|+ |..+..|+.|+|+           +.+++|+.|.+..|.+-.++.
T Consensus       105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpk  167 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPK  167 (264)
T ss_pred             hhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcH
Confidence            999999999864  554 7777888888887           788899999999998887764

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.27  E-value=1.9e-11  Score=132.55  Aligned_cols=145  Identities=27%  Similarity=0.332  Sum_probs=98.0

Q ss_pred             cccccccCCCCCCCCCCccEEEeeCCCCCCCCCCC--------------C---C-CCCcEEEccCCCCCCCCCCCCCCCC
Q 015448            4 LSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLT--------------D---F-NNLERLDLSSNNLTSLEGLKHCVNL   65 (406)
Q Consensus         4 Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~--------------~---l-~~L~~L~Ls~N~l~~l~~l~~L~~L   65 (406)
                      |+.|++..+..  .+++|+.|+|++|.|+.++.+.              .   + .+|++|+|++|.|+.+|.+  ..+|
T Consensus       289 Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~l--p~~L  364 (788)
T PRK15387        289 IFGNQLTSLPV--LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTL--PSEL  364 (788)
T ss_pred             CcCCccccccc--cccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCCCCCC--Cccc
Confidence            44555554432  3467888888888887765211              0   1 2566666666666666543  2456


Q ss_pred             cEEEecCCCCCCCCCCCCCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC--------
Q 015448           66 KWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD--------  137 (406)
Q Consensus        66 ~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls--------  137 (406)
                      +.|++++|.|+.+|.+  ..+|+.|+|++|.|+.+|.+  .++|+.|++++|.|+.+|.+  +.+|+.|+|+        
T Consensus       365 ~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~LP~l--~s~L~~LdLS~N~LssIP~l--~~~L~~L~Ls~NqLt~LP  438 (788)
T PRK15387        365 YKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVL--PSELKELMVSGNRLTSLPML--PSGLLSLSVYRNQLTRLP  438 (788)
T ss_pred             ceehhhccccccCccc--ccccceEEecCCcccCCCCc--ccCCCEEEccCCcCCCCCcc--hhhhhhhhhccCcccccC
Confidence            6666666666666643  24688899999998888754  36799999999999888753  3456666666        


Q ss_pred             ---CCCCCCCEEEcCCCCCCCchh
Q 015448          138 ---SYFFNLNNLNLQGNPVAEYDK  158 (406)
Q Consensus       138 ---~~l~~L~~L~Ls~N~i~~~~~  158 (406)
                         ..+++|..|+|++|+++....
T Consensus       439 ~sl~~L~~L~~LdLs~N~Ls~~~~  462 (788)
T PRK15387        439 ESLIHLSSETTVNLEGNPLSERTL  462 (788)
T ss_pred             hHHhhccCCCeEECCCCCCCchHH
Confidence               457899999999999987543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=99.27  E-value=2.5e-12  Score=116.24  Aligned_cols=160  Identities=23%  Similarity=0.340  Sum_probs=110.8

Q ss_pred             CCccccccccCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCC
Q 015448            1 MTRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG   80 (406)
Q Consensus         1 m~~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~   80 (406)
                      |++|+-+-+.+..+......=+.++|.+..+..+..++.+                     +.+...++|++|.|..++.
T Consensus         1 m~klt~el~~q~pqy~~~~~e~e~~LR~lkip~ienlg~~---------------------~d~~d~iDLtdNdl~~l~~   59 (233)
T KOG1644|consen    1 MVKLTAELIVQAPQYINSVRERELDLRGLKIPVIENLGAT---------------------LDQFDAIDLTDNDLRKLDN   59 (233)
T ss_pred             CccccHHHHhhchhhhhhccccccccccccccchhhcccc---------------------ccccceecccccchhhccc
Confidence            6777777776666555555555666666655544432211                     2334455555555555555


Q ss_pred             CCCCCCCcEEEcCCCCCCCCc-CCC-CCCCCCEEEccCCccCCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchh
Q 015448           81 IEGLSKPTVLNVGKNKLRSMD-DVT-SVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDK  158 (406)
Q Consensus        81 l~~l~~L~~L~Ls~N~i~~l~-~l~-~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~  158 (406)
                      |..+++|.+|.|++|+|+.+. .+. .+++|..|.|.+|.|..+..+..+.         .||.|++|.+-+|+++....
T Consensus        60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa---------~~p~L~~Ltll~Npv~~k~~  130 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLA---------SCPKLEYLTLLGNPVEHKKN  130 (233)
T ss_pred             CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhc---------cCCccceeeecCCchhcccC
Confidence            555555555566666665553 233 3566777777777777766655553         67899999999999999999


Q ss_pred             HHHHHHhcCCCcccccCcCCChhhhhhhhhhh
Q 015448          159 LAKKVKTLLPNLCIFNARPIDRITKNEKDNIV  190 (406)
Q Consensus       159 ~~~~~~~~lp~L~~Ld~~~~~~~~~~~~~~~l  190 (406)
                      |+.+++..+|+|++||...++..+|..+..+.
T Consensus       131 YR~yvl~klp~l~~LDF~kVt~~ER~~A~~~f  162 (233)
T KOG1644|consen  131 YRLYVLYKLPSLRTLDFQKVTRKEREEAEVFF  162 (233)
T ss_pred             ceeEEEEecCcceEeehhhhhHHHHHHHHHHh
Confidence            99999999999999999999999999988777

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.25  E-value=7.2e-13  Score=141.17  Aligned_cols=154  Identities=27%  Similarity=0.343  Sum_probs=125.8

Q ss_pred             cccccccCCCCCCC-CCCccEEEeeCCCCCCCC--CC-------------------------CCCCCCcEEEccCCCCCC
Q 015448            4 LSTQQILKDNKTCD-PNSIKSLSLTHKALSDVS--CL-------------------------TDFNNLERLDLSSNNLTS   55 (406)
Q Consensus         4 Ls~n~i~~~~~~~~-~~~L~~L~Ls~n~l~~i~--~l-------------------------~~l~~L~~L~Ls~N~l~~   55 (406)
                      +.+|++..+.+... +.+|++|+|..|.|..+|  .+                         ..++.|+.|+|.+|.+++
T Consensus       294 ~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd  373 (1081)
T KOG0618|consen  294 AAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTD  373 (1081)
T ss_pred             hhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccc
Confidence            34567777766555 788999999999887764  11                         123457778888888886


Q ss_pred             C--CCCCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCCCCCCCCc-CCCCCCCCCEEEccCCccCCccccCCCCC
Q 015448           56 L--EGLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGKNKLRSMD-DVTSVVSLRALILNDNEIVSICKLDQMKE  130 (406)
Q Consensus        56 l--~~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~  130 (406)
                      -  |.|.++.+|+.|+|++|+|..+|  .+..+..|+.|+||+|.++.+| .+..+..|++|...+|+|..+|.+..++.
T Consensus       374 ~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~q  453 (1081)
T KOG0618|consen  374 SCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQ  453 (1081)
T ss_pred             cchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCc
Confidence            4  66888999999999999999999  3889999999999999999998 47888999999999999999999999999


Q ss_pred             CcEeeCC------------CCCCCCCEEEcCCCCCCCch
Q 015448          131 LNTLGMD------------SYFFNLNNLNLQGNPVAEYD  157 (406)
Q Consensus       131 L~~L~Ls------------~~l~~L~~L~Ls~N~i~~~~  157 (406)
                      |+++|++            ...++|++|+|+||....+.
T Consensus       454 L~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d  492 (1081)
T KOG0618|consen  454 LKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFD  492 (1081)
T ss_pred             ceEEecccchhhhhhhhhhCCCcccceeeccCCcccccc
Confidence            9999999            23379999999999864444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.21  E-value=8.1e-12  Score=112.71  Aligned_cols=125  Identities=25%  Similarity=0.441  Sum_probs=44.5

Q ss_pred             EccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCC-CCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccc-
Q 015448           47 DLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIE-GLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICK-  124 (406)
Q Consensus        47 ~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l~-~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~-  124 (406)
                      .|..+.|...+.+.++..+++|+|.+|.|+.|..++ .+.+|+.|+|++|.|+.++++..++.|+.|++++|.|+.+.. 
T Consensus         3 ~lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~   82 (175)
T PF14580_consen    3 RLTANMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEG   82 (175)
T ss_dssp             ---------------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHH
T ss_pred             cccccccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccc
Confidence            355667777777888888999999999999998887 588999999999999999999999999999999999999853 


Q ss_pred             cCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCccccc--CcCCChhhhh
Q 015448          125 LDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFN--ARPIDRITKN  184 (406)
Q Consensus       125 l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld--~~~~~~~~~~  184 (406)
                      +..           .+|+|+.|+|++|.|..+..+.  .+..||+|+.|+  ++|++....+
T Consensus        83 l~~-----------~lp~L~~L~L~~N~I~~l~~l~--~L~~l~~L~~L~L~~NPv~~~~~Y  131 (175)
T PF14580_consen   83 LDK-----------NLPNLQELYLSNNKISDLNELE--PLSSLPKLRVLSLEGNPVCEKKNY  131 (175)
T ss_dssp             HHH-----------H-TT--EEE-TTS---SCCCCG--GGGG-TT--EEE-TT-GGGGSTTH
T ss_pred             hHH-----------hCCcCCEEECcCCcCCChHHhH--HHHcCCCcceeeccCCcccchhhH
Confidence            321           3568999999999998876543  366899998664  6788755443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.19  E-value=1.8e-12  Score=123.40  Aligned_cols=123  Identities=26%  Similarity=0.385  Sum_probs=111.6

Q ss_pred             CccccccccCCCCCCC-CCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCC-CCCCCCcEEEecCCCCCCCC
Q 015448            2 TRLSTQQILKDNKTCD-PNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGL-KHCVNLKWLSLVQNKLQSLK   79 (406)
Q Consensus         2 ~~Ls~n~i~~~~~~~~-~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l-~~L~~L~~L~Ls~N~l~~l~   79 (406)
                      ++||.|.|..+..... .+.++.|++++|.|..+..+..+++|+.||||+|.++.+.++ ..|.|++.|.|+.|.|.++.
T Consensus       289 lDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LS  368 (490)
T KOG1259|consen  289 LDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLS  368 (490)
T ss_pred             ccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhh
Confidence            5899999999875544 789999999999999999999999999999999999999874 46889999999999999999


Q ss_pred             CCCCCCCCcEEEcCCCCCCCCc---CCCCCCCCCEEEccCCccCCccc
Q 015448           80 GIEGLSKPTVLNVGKNKLRSMD---DVTSVVSLRALILNDNEIVSICK  124 (406)
Q Consensus        80 ~l~~l~~L~~L~Ls~N~i~~l~---~l~~l~~L~~L~Ls~N~i~~l~~  124 (406)
                      +++.+.+|..|++++|+|..+.   .++++|.|++|.|.+|+|..++.
T Consensus       369 GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  369 GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            9999999999999999998864   68999999999999999987754

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=99.17  E-value=2.6e-13  Score=141.14  Aligned_cols=152  Identities=24%  Similarity=0.283  Sum_probs=126.6

Q ss_pred             CCCccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCC--CCCCCCCcEEEcCC
Q 015448           18 PNSIKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG--IEGLSKPTVLNVGK   94 (406)
Q Consensus        18 ~~~L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~   94 (406)
                      ...|.+.++++|.+..+. ++.-++.|+.|+|++|.++....+..|+.|++|||++|.+..+|.  ..++. |+.|+|.+
T Consensus       163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn  241 (1096)
T KOG1859|consen  163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN  241 (1096)
T ss_pred             hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence            346778889999998876 788899999999999999999999999999999999999999994  34444 99999999


Q ss_pred             CCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhHHHHHHhcCC-----C
Q 015448           95 NKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLP-----N  169 (406)
Q Consensus        95 N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp-----~  169 (406)
                      |.++++-++.++.+|+.|+|++|-|.....+..|..         +..|+.|+|.|||+++-+.++..+...+.     .
T Consensus       242 N~l~tL~gie~LksL~~LDlsyNll~~hseL~pLws---------Ls~L~~L~LeGNPl~c~p~hRaataqYl~~~~a~~  312 (1096)
T KOG1859|consen  242 NALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWS---------LSSLIVLWLEGNPLCCAPWHRAATAQYLHKNSAPV  312 (1096)
T ss_pred             cHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHH---------HHHHHHHhhcCCccccCHHHHHHHHhHhccccCCc
Confidence            999999999999999999999999988777666543         34788999999999999998887766543     2


Q ss_pred             cccccCcCCC
Q 015448          170 LCIFNARPID  179 (406)
Q Consensus       170 L~~Ld~~~~~  179 (406)
                      =-.||+..+.
T Consensus       313 ~f~LDgk~l~  322 (1096)
T KOG1859|consen  313 KFKLDGKALG  322 (1096)
T ss_pred             ceEecceecc
Confidence            2256665444

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.16  E-value=3.7e-12  Score=130.23  Aligned_cols=153  Identities=31%  Similarity=0.434  Sum_probs=118.6

Q ss_pred             cccccccCC-CCCCCCCCccEEEeeCCCCCCCCC-CCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCC
Q 015448            4 LSTQQILKD-NKTCDPNSIKSLSLTHKALSDVSC-LTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGI   81 (406)
Q Consensus         4 Ls~n~i~~~-~~~~~~~~L~~L~Ls~n~l~~i~~-l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l   81 (406)
                      +..|.|..+ ..+..+.+|..|++.+|.|..+.. +..|++|++|+|++|.|+.+.++..++.|+.|++++|.|..++++
T Consensus        79 l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~  158 (414)
T KOG0531|consen   79 LRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGL  158 (414)
T ss_pred             cchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccCC
Confidence            445666663 346778888899999999988886 888889999999999999988888888899999999999888888


Q ss_pred             CCCCCCcEEEcCCCCCCCCcC--CCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC----------CCCCC--CCEEE
Q 015448           82 EGLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD----------SYFFN--LNNLN  147 (406)
Q Consensus        82 ~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls----------~~l~~--L~~L~  147 (406)
                      ..++.|+.|++++|.+..+..  +..+.+|+.+++.+|.+..+..+..+..+..+++.          ..+..  |+.++
T Consensus       159 ~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~  238 (414)
T KOG0531|consen  159 ESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELY  238 (414)
T ss_pred             ccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHh
Confidence            888889999999999888877  57888888888988888777655544444433333          12222  67788


Q ss_pred             cCCCCCCCc
Q 015448          148 LQGNPVAEY  156 (406)
Q Consensus       148 Ls~N~i~~~  156 (406)
                      +++|++...
T Consensus       239 l~~n~i~~~  247 (414)
T KOG0531|consen  239 LSGNRISRS  247 (414)
T ss_pred             cccCccccc
Confidence            888888765

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.16  E-value=2.9e-13  Score=133.00  Aligned_cols=142  Identities=23%  Similarity=0.362  Sum_probs=77.3

Q ss_pred             CCCCccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCCC-CCCCCCCcEEEecCCCCCCCC-CCCCCCCCcEEEcC
Q 015448           17 DPNSIKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLEG-LKHCVNLKWLSLVQNKLQSLK-GIEGLSKPTVLNVG   93 (406)
Q Consensus        17 ~~~~L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~~-l~~L~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls   93 (406)
                      .+..+..|+..+|+++.+| .+..+..|..|++.+|.+..+++ .-++..|++|+...|-++.+| .++.+.+|..|+|.
T Consensus       135 ~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~  214 (565)
T KOG0472|consen  135 RLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLR  214 (565)
T ss_pred             HHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhh
Confidence            3455555566666665555 44455555555555555555542 222555555555555555555 35555555555555


Q ss_pred             CCCCCCCcCCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC-----------CCCCCCCEEEcCCCCCCCchh
Q 015448           94 KNKLRSMDDVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD-----------SYFFNLNNLNLQGNPVAEYDK  158 (406)
Q Consensus        94 ~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls-----------~~l~~L~~L~Ls~N~i~~~~~  158 (406)
                      .|.|..+|.|..+..|..|+++.|.|..++.  +.++..|-+|||.           .-+.+|.+|++++|.|+.++.
T Consensus       215 ~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~  292 (565)
T KOG0472|consen  215 RNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPY  292 (565)
T ss_pred             hcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCc
Confidence            5555555555555555555555555555443  3445555555554           234466677777777777664

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.14  E-value=5e-11  Score=129.51  Aligned_cols=170  Identities=19%  Similarity=0.264  Sum_probs=87.9

Q ss_pred             ccccccccCCCCCCCCCCccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCCC-CCCCCCCcEEEecCCCCCCCCC
Q 015448            3 RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLEG-LKHCVNLKWLSLVQNKLQSLKG   80 (406)
Q Consensus         3 ~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~~-l~~L~~L~~L~Ls~N~l~~l~~   80 (406)
                      +|+.|.+..+. ...+.+|+.|+|++|.|..+| .+  ..+|+.|+|++|.|+.+|. +  +.+|+.|+|++|.|+.+|.
T Consensus       226 ~Ls~N~LtsLP-~~l~~~L~~L~Ls~N~L~~LP~~l--~s~L~~L~Ls~N~L~~LP~~l--~~sL~~L~Ls~N~Lt~LP~  300 (754)
T PRK15370        226 YANSNQLTSIP-ATLPDTIQEMELSINRITELPERL--PSALQSLDLFHNKISCLPENL--PEELRYLSVYDNSIRTLPA  300 (754)
T ss_pred             ECCCCccccCC-hhhhccccEEECcCCccCcCChhH--hCCCCEEECcCCccCcccccc--CCCCcEEECCCCccccCcc
Confidence            45555555443 233557778888888877776 33  2467777777777777654 3  2467777777777776652


Q ss_pred             -CC-------------------CCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC---
Q 015448           81 -IE-------------------GLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD---  137 (406)
Q Consensus        81 -l~-------------------~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls---  137 (406)
                       +.                   ..++|+.|++++|.++.+|.. -.++|+.|+|++|.|+.+|. ...++|+.|+|+   
T Consensus       301 ~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~-l~~sL~~L~Ls~N~L~~LP~-~lp~~L~~LdLs~N~  378 (754)
T PRK15370        301 HLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPAS-LPPELQVLDVSKNQITVLPE-TLPPTITTLDVSRNA  378 (754)
T ss_pred             cchhhHHHHHhcCCccccCCccccccceeccccCCccccCChh-hcCcccEEECCCCCCCcCCh-hhcCCcCEEECCCCc
Confidence             21                   012444444444444444420 11355555555555554443 112345555554   


Q ss_pred             -CCC-----CCCCEEEcCCCCCCCchhHHHHHHhcCCCcccc--cCcCCC
Q 015448          138 -SYF-----FNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIF--NARPID  179 (406)
Q Consensus       138 -~~l-----~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~L--d~~~~~  179 (406)
                       ..+     ..|+.|++++|.+..++.....+...++.+..|  +.+++.
T Consensus       379 Lt~LP~~l~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        379 LTNLPENLPAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             CCCCCHhHHHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence             011     134455555555555443222233334555533  345554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.14  E-value=1.5e-10  Score=125.79  Aligned_cols=135  Identities=25%  Similarity=0.277  Sum_probs=80.8

Q ss_pred             CCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCC-CCCCCCCcEEEecCCCCCCCC-CCCCCCCCcEEEcCC
Q 015448           17 DPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEG-LKHCVNLKWLSLVQNKLQSLK-GIEGLSKPTVLNVGK   94 (406)
Q Consensus        17 ~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~-l~~L~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~   94 (406)
                      .+..|+.|+|++|.|+.+|.- .+.+|++|+|++|.|+.+|. +  ..+|+.|+|++|.|..+| .+.  .+|+.|+|++
T Consensus       197 Ip~~L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~  271 (754)
T PRK15370        197 IPEQITTLILDNNELKSLPEN-LQGNIKTLYANSNQLTSIPATL--PDTIQEMELSINRITELPERLP--SALQSLDLFH  271 (754)
T ss_pred             cccCCcEEEecCCCCCcCChh-hccCCCEEECCCCccccCChhh--hccccEEECcCCccCcCChhHh--CCCCEEECcC
Confidence            356788888888888877621 12477777887777777653 2  235666667666666666 232  3566666666


Q ss_pred             CCCCCCcC-CCCCCCCCEEEccCCccCCccc-c-------------------CCCCCCcEeeCC---------CCCCCCC
Q 015448           95 NKLRSMDD-VTSVVSLRALILNDNEIVSICK-L-------------------DQMKELNTLGMD---------SYFFNLN  144 (406)
Q Consensus        95 N~i~~l~~-l~~l~~L~~L~Ls~N~i~~l~~-l-------------------~~L~~L~~L~Ls---------~~l~~L~  144 (406)
                      |.|+.+|. +  ..+|+.|+|++|.|+.++. +                   ...++|++|+++         .-.++|+
T Consensus       272 N~L~~LP~~l--~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~~sL~  349 (754)
T PRK15370        272 NKISCLPENL--PEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLPPELQ  349 (754)
T ss_pred             CccCcccccc--CCCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccccCChhhcCccc
Confidence            66666553 2  1356666666666555432 1                   012355555554         1224777


Q ss_pred             EEEcCCCCCCCchh
Q 015448          145 NLNLQGNPVAEYDK  158 (406)
Q Consensus       145 ~L~Ls~N~i~~~~~  158 (406)
                      .|+|++|.|..++.
T Consensus       350 ~L~Ls~N~L~~LP~  363 (754)
T PRK15370        350 VLDVSKNQITVLPE  363 (754)
T ss_pred             EEECCCCCCCcCCh
Confidence            77888777776653

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.10  E-value=5.5e-12  Score=123.83  Aligned_cols=122  Identities=30%  Similarity=0.442  Sum_probs=99.3

Q ss_pred             CCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecC-CCCCCCC--CCCCCCCCc
Q 015448           16 CDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQ-NKLQSLK--GIEGLSKPT   88 (406)
Q Consensus        16 ~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~-N~l~~l~--~l~~l~~L~   88 (406)
                      .-+...+.|.|..|.|+.||  +|+.+++|+.|||++|.|+.+.  +|.++..|..|-+.+ |+|+.+|  .|.+|..|+
T Consensus        64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq  143 (498)
T KOG4237|consen   64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ  143 (498)
T ss_pred             cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence            34667888999999999998  8999999999999999999884  488898888887776 9999999  488888888


Q ss_pred             EEEcCCCCCCCCc--CCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC
Q 015448           89 VLNVGKNKLRSMD--DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD  137 (406)
Q Consensus        89 ~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls  137 (406)
                      .|.+.-|.+..+.  .+..+++|..|.+.+|.+..++.  +..+.+++++.+.
T Consensus       144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA  196 (498)
T KOG4237|consen  144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLA  196 (498)
T ss_pred             HHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhh
Confidence            8888888888765  47788888888888888777764  6666666666554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.10  E-value=9.2e-13  Score=129.47  Aligned_cols=167  Identities=22%  Similarity=0.262  Sum_probs=123.1

Q ss_pred             ccccccCCC-CCCCCCCccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCCC-CCCCCCCcEEEecCCCCCCCC-C
Q 015448            5 STQQILKDN-KTCDPNSIKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLEG-LKHCVNLKWLSLVQNKLQSLK-G   80 (406)
Q Consensus         5 s~n~i~~~~-~~~~~~~L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~~-l~~L~~L~~L~Ls~N~l~~l~-~   80 (406)
                      ++|.+..+. ..+...++..|++++|.+..++ .++.+..|..|+..+|+|+.+|+ +.++..|..|++.+|.+..+| .
T Consensus        99 s~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~  178 (565)
T KOG0472|consen   99 SHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPEN  178 (565)
T ss_pred             ccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHH
Confidence            334444443 2344556666677777766665 56666677777777777777763 666777777777777777766 3


Q ss_pred             CCCCCCCcEEEcCCCCCCCCc-CCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC------------CCCCCCCEEE
Q 015448           81 IEGLSKPTVLNVGKNKLRSMD-DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD------------SYFFNLNNLN  147 (406)
Q Consensus        81 l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls------------~~l~~L~~L~  147 (406)
                      .-.+..|++|+...|.+..+| .++.+.+|.-|+|..|.|..+|.|..|..|..|.++            .++++|..|+
T Consensus       179 ~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLD  258 (565)
T KOG0472|consen  179 HIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLD  258 (565)
T ss_pred             HHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeee
Confidence            444778888899888888887 588899999999999999999999999999988888            6889999999


Q ss_pred             cCCCCCCCchhHHHHHHhcCCCcccccC
Q 015448          148 LQGNPVAEYDKLAKKVKTLLPNLCIFNA  175 (406)
Q Consensus       148 Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~  175 (406)
                      |..|.+...|.-    +..+.+|..||.
T Consensus       259 LRdNklke~Pde----~clLrsL~rLDl  282 (565)
T KOG0472|consen  259 LRDNKLKEVPDE----ICLLRSLERLDL  282 (565)
T ss_pred             ccccccccCchH----HHHhhhhhhhcc
Confidence            999999998863    233555555553

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.07  E-value=6.9e-11  Score=119.66  Aligned_cols=158  Identities=28%  Similarity=0.388  Sum_probs=108.4

Q ss_pred             CCCCCCCccEEEeeCCCCCCCCCCCCCC--CCcEEEccCCCCCCCC-CCCCCCCCcEEEecCCCCCCCCCCC-CCCCCcE
Q 015448           14 KTCDPNSIKSLSLTHKALSDVSCLTDFN--NLERLDLSSNNLTSLE-GLKHCVNLKWLSLVQNKLQSLKGIE-GLSKPTV   89 (406)
Q Consensus        14 ~~~~~~~L~~L~Ls~n~l~~i~~l~~l~--~L~~L~Ls~N~l~~l~-~l~~L~~L~~L~Ls~N~l~~l~~l~-~l~~L~~   89 (406)
                      .....+.++.|++.+|.++.++....+.  +|+.|++++|.+..++ .+..+++|+.|++++|.+..++... .++.|+.
T Consensus       111 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~  190 (394)
T COG4886         111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN  190 (394)
T ss_pred             hhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence            3344567788888888888887443333  7888888888888874 6777888888888888888887543 7778888


Q ss_pred             EEcCCCCCCCCcCC-CCCCCCCEEEccCCc-cCCccccCCCCCCcEeeCC-----------CCCCCCCEEEcCCCCCCCc
Q 015448           90 LNVGKNKLRSMDDV-TSVVSLRALILNDNE-IVSICKLDQMKELNTLGMD-----------SYFFNLNNLNLQGNPVAEY  156 (406)
Q Consensus        90 L~Ls~N~i~~l~~l-~~l~~L~~L~Ls~N~-i~~l~~l~~L~~L~~L~Ls-----------~~l~~L~~L~Ls~N~i~~~  156 (406)
                      |++++|.+..+|.. ..+..|..|.+++|. +..+..+..+.++..|.+.           ..+++|+.|++++|.++.+
T Consensus       191 L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i  270 (394)
T COG4886         191 LDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSI  270 (394)
T ss_pred             eeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccc
Confidence            88888888887754 355558888888884 3433345555555555443           4566678888888888777


Q ss_pred             hhHHHHHHhcCCCcccccCc
Q 015448          157 DKLAKKVKTLLPNLCIFNAR  176 (406)
Q Consensus       157 ~~~~~~~~~~lp~L~~Ld~~  176 (406)
                      +.     +..+.+|+.|+..
T Consensus       271 ~~-----~~~~~~l~~L~~s  285 (394)
T COG4886         271 SS-----LGSLTNLRELDLS  285 (394)
T ss_pred             cc-----ccccCccCEEecc
Confidence            64     3445666655544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.05  E-value=5.7e-12  Score=128.51  Aligned_cols=154  Identities=30%  Similarity=0.381  Sum_probs=103.8

Q ss_pred             ccccccccCCC-CCCCCCCccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCCC-CCCCCCCcEEEecCCCCCCCC
Q 015448            3 RLSTQQILKDN-KTCDPNSIKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLEG-LKHCVNLKWLSLVQNKLQSLK   79 (406)
Q Consensus         3 ~Ls~n~i~~~~-~~~~~~~L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~~-l~~L~~L~~L~Ls~N~l~~l~   79 (406)
                      +|+-|....+. ..+.+..|..|.|.+|+|..++ ++.++..|++|+|+.|+++.+|. ++.|+ |+.|.+++|+++.+|
T Consensus        81 DlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp  159 (722)
T KOG0532|consen   81 DLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLP  159 (722)
T ss_pred             hccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCC
Confidence            44444444443 3344566677777777777776 66777777777777777777764 55443 777777777777777


Q ss_pred             -CCCCCCCCcEEEcCCCCCCCCc-CCCCCCCCCEEEccCCccCCccc-cCCCCCCcEeeCC-----------CCCCCCCE
Q 015448           80 -GIEGLSKPTVLNVGKNKLRSMD-DVTSVVSLRALILNDNEIVSICK-LDQMKELNTLGMD-----------SYFFNLNN  145 (406)
Q Consensus        80 -~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~N~i~~l~~-l~~L~~L~~L~Ls-----------~~l~~L~~  145 (406)
                       .++.++.|..|+.+.|.|.++| .++++.+|+.|.+..|++..++. +..| .|..||++           ..|..|++
T Consensus       160 ~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~  238 (722)
T KOG0532|consen  160 EEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQV  238 (722)
T ss_pred             cccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhhee
Confidence             5777777777777777777766 47777777777777777777664 4433 35555555           56667777


Q ss_pred             EEcCCCCCCCchh
Q 015448          146 LNLQGNPVAEYDK  158 (406)
Q Consensus       146 L~Ls~N~i~~~~~  158 (406)
                      |-|.+||+...+.
T Consensus       239 l~LenNPLqSPPA  251 (722)
T KOG0532|consen  239 LQLENNPLQSPPA  251 (722)
T ss_pred             eeeccCCCCCChH
Confidence            7777777766553

>PLN03210 Resistant to P

Probab=99.04  E-value=1.9e-09  Score=123.34  Aligned_cols=77  Identities=22%  Similarity=0.324  Sum_probs=35.9

Q ss_pred             CCccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCC-CCCCCCCCCCCCCcEEEecCCC-CCCCC-CCCCCCCCcEEEcCC
Q 015448           19 NSIKSLSLTHKALSDVS-CLTDFNNLERLDLSSNN-LTSLEGLKHCVNLKWLSLVQNK-LQSLK-GIEGLSKPTVLNVGK   94 (406)
Q Consensus        19 ~~L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~-l~~l~~l~~L~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~   94 (406)
                      .+|+.|+|.+|.|..++ .+..+++|+.|+|+++. +..+|.+..+++|+.|+|++|. +..+| .+..+++|+.|+|++
T Consensus       611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~  690 (1153)
T PLN03210        611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSR  690 (1153)
T ss_pred             cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCC
Confidence            44444555544444443 34444555555554432 3444444445555555554432 33444 344444555555544


Q ss_pred             C
Q 015448           95 N   95 (406)
Q Consensus        95 N   95 (406)
                      |
T Consensus       691 c  691 (1153)
T PLN03210        691 C  691 (1153)
T ss_pred             C
Confidence            3

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.03  E-value=4.8e-12  Score=135.00  Aligned_cols=112  Identities=22%  Similarity=0.279  Sum_probs=61.2

Q ss_pred             CcEEEecCCCCCC--CCCCCCCCCCcEEEcCCCCCCCCcC--CCCCCCCCEEEccCCccCCccc-cCCCCCCcEeeCC--
Q 015448           65 LKWLSLVQNKLQS--LKGIEGLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDNEIVSICK-LDQMKELNTLGMD--  137 (406)
Q Consensus        65 L~~L~Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~-l~~L~~L~~L~Ls--  137 (406)
                      |+.|++.+|.+++  +|.+.++.+|++|+|++|+|..+|+  +..+..|++|+||+|.++.++. +..|..|++|...  
T Consensus       361 Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN  440 (1081)
T KOG0618|consen  361 LQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSN  440 (1081)
T ss_pred             HHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCC
Confidence            3344444444442  3344455555555555555555552  4455555555555555555553 4444555554443  


Q ss_pred             --------CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCcCCC
Q 015448          138 --------SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPID  179 (406)
Q Consensus       138 --------~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~~~~  179 (406)
                              ..++.|+.++|+.|.++...-..   ..--|+|++||....+
T Consensus       441 ~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~---~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  441 QLLSFPELAQLPQLKVLDLSCNNLSEVTLPE---ALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             ceeechhhhhcCcceEEecccchhhhhhhhh---hCCCcccceeeccCCc
Confidence                    56778888888888886653211   0112688888765544

>PLN03210 Resistant to P

Probab=99.03  E-value=2.3e-09  Score=122.71  Aligned_cols=141  Identities=16%  Similarity=0.235  Sum_probs=116.6

Q ss_pred             CCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCC-CCCCCCCCcEEEecCC-CCCCCCCCCCCCCCcEEEcCCC
Q 015448           18 PNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLE-GLKHCVNLKWLSLVQN-KLQSLKGIEGLSKPTVLNVGKN   95 (406)
Q Consensus        18 ~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~-~l~~L~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N   95 (406)
                      +..|+.|++.++.+..+|.--.+.+|+.|+|++|.|..++ ++..+++|+.|+|++| .+..+|.+..+++|+.|+|++|
T Consensus       588 p~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c  667 (1153)
T PLN03210        588 PPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDC  667 (1153)
T ss_pred             CcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCC
Confidence            4578899999998888884336789999999999999885 4888999999999976 4778888889999999999987


Q ss_pred             C-CCCCc-CCCCCCCCCEEEccCC-ccCCccccCCCCCCcEeeCC---------CCCCCCCEEEcCCCCCCCchh
Q 015448           96 K-LRSMD-DVTSVVSLRALILNDN-EIVSICKLDQMKELNTLGMD---------SYFFNLNNLNLQGNPVAEYDK  158 (406)
Q Consensus        96 ~-i~~l~-~l~~l~~L~~L~Ls~N-~i~~l~~l~~L~~L~~L~Ls---------~~l~~L~~L~Ls~N~i~~~~~  158 (406)
                      . +..+| .+..+++|+.|++++| .+..+|....+++|+.|+|+         ....+|+.|+|++|.+..++.
T Consensus       668 ~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~  742 (1153)
T PLN03210        668 SSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPS  742 (1153)
T ss_pred             CCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccc
Confidence            5 66677 5788999999999986 57777765578899999887         223578999999999887764

syringae 6; Provisional

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.03  E-value=1.2e-10  Score=117.92  Aligned_cols=157  Identities=26%  Similarity=0.364  Sum_probs=130.5

Q ss_pred             CccccccccCCCCCCCCC--CccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCCCCC-CCCCCcEEEecCCCCCC
Q 015448            2 TRLSTQQILKDNKTCDPN--SIKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLEGLK-HCVNLKWLSLVQNKLQS   77 (406)
Q Consensus         2 ~~Ls~n~i~~~~~~~~~~--~L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~~l~-~L~~L~~L~Ls~N~l~~   77 (406)
                      .++..+.|.++.+...+.  +|+.|++++|.+..++ .+..+++|+.|++++|.++.++... .+++|+.|++++|.++.
T Consensus       121 L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~  200 (394)
T COG4886         121 LDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISD  200 (394)
T ss_pred             EecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCcccc
Confidence            456778888888766654  8999999999999995 8899999999999999999998755 89999999999999999


Q ss_pred             CCCC-CCCCCCcEEEcCCCC-CCCCcCCCCCCCCCEEEccCCccCCcc-ccCCCCCCcEeeCC----------CCCCCCC
Q 015448           78 LKGI-EGLSKPTVLNVGKNK-LRSMDDVTSVVSLRALILNDNEIVSIC-KLDQMKELNTLGMD----------SYFFNLN  144 (406)
Q Consensus        78 l~~l-~~l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~Ls~N~i~~l~-~l~~L~~L~~L~Ls----------~~l~~L~  144 (406)
                      +|.. ..+..|+.|.+++|. +..+..+..+..+..|.+.+|++..++ .+..+++|++|+++          ..+.+|+
T Consensus       201 l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~  280 (394)
T COG4886         201 LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLR  280 (394)
T ss_pred             CchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccccccccccccCccC
Confidence            9964 566669999999995 444556778888888888888887743 47777788888888          5678999


Q ss_pred             EEEcCCCCCCCchh
Q 015448          145 NLNLQGNPVAEYDK  158 (406)
Q Consensus       145 ~L~Ls~N~i~~~~~  158 (406)
                      .|++++|.+.....
T Consensus       281 ~L~~s~n~~~~~~~  294 (394)
T COG4886         281 ELDLSGNSLSNALP  294 (394)
T ss_pred             EEeccCccccccch
Confidence            99999999987754

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=5.8e-11  Score=117.98  Aligned_cols=165  Identities=22%  Similarity=0.240  Sum_probs=118.1

Q ss_pred             CCCccEEEeeCCCCCCCC---CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCCCC---CCCCCCCCcE
Q 015448           18 PNSIKSLSLTHKALSDVS---CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSLK---GIEGLSKPTV   89 (406)
Q Consensus        18 ~~~L~~L~Ls~n~l~~i~---~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~l~---~l~~l~~L~~   89 (406)
                      +++|+.|.|+.|+|+.-.   .+..||+|..|+|.+|....+.  ....+..|+.|+|++|++-+.+   -++.++.|..
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ  275 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence            566777777777776432   4556777788888777422221  2445677888888888887666   3677888888


Q ss_pred             EEcCCCCCCCCc--CC------CCCCCCCEEEccCCccCCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhH-H
Q 015448           90 LNVGKNKLRSMD--DV------TSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKL-A  160 (406)
Q Consensus        90 L~Ls~N~i~~l~--~l------~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~-~  160 (406)
                      |+++.|.|.++.  ..      ..+++|++|++..|+|..++.+.++.         .+++|..|.+.+|.+...... .
T Consensus       276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~---------~l~nlk~l~~~~n~ln~e~~~a~  346 (505)
T KOG3207|consen  276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLR---------TLENLKHLRITLNYLNKETDTAK  346 (505)
T ss_pred             hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhh---------ccchhhhhhccccccccccccee
Confidence            888888888753  22      45678888888888888888777665         456888888888888665431 2


Q ss_pred             HHHHhcCCCcccccCcCCChhhhhhhhhhhc
Q 015448          161 KKVKTLLPNLCIFNARPIDRITKNEKDNIVD  191 (406)
Q Consensus       161 ~~~~~~lp~L~~Ld~~~~~~~~~~~~~~~l~  191 (406)
                      ..++..+++|..||...+...+|..++..+.
T Consensus       347 ~~VIAr~~~l~~LN~~di~p~eRR~AEl~~~  377 (505)
T KOG3207|consen  347 LLVIARISQLVKLNDVDISPNERRDAELYYL  377 (505)
T ss_pred             EEeeeehhhhhhhcccccChHHhhhhhhhHH
Confidence            2367788899999999998888887775543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=4.5e-11  Score=118.78  Aligned_cols=165  Identities=21%  Similarity=0.273  Sum_probs=116.6

Q ss_pred             CCCCccEEEeeCCCCCCCC----CCCCCCCCcEEEccCCCCCCCCC---CCCCCCCcEEEecCCCCCC--CC-CCCCCCC
Q 015448           17 DPNSIKSLSLTHKALSDVS----CLTDFNNLERLDLSSNNLTSLEG---LKHCVNLKWLSLVQNKLQS--LK-GIEGLSK   86 (406)
Q Consensus        17 ~~~~L~~L~Ls~n~l~~i~----~l~~l~~L~~L~Ls~N~l~~l~~---l~~L~~L~~L~Ls~N~l~~--l~-~l~~l~~   86 (406)
                      .+++++.|+|++|-|..+.    .+..||+|+.|+|+.|.+.....   -..+++|+.|.|+.|.|+.  +. -+..+|+
T Consensus       144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs  223 (505)
T KOG3207|consen  144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS  223 (505)
T ss_pred             hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence            4788899999998887763    55688999999999998875421   2357888888898888873  22 2556777


Q ss_pred             CcEEEcCCCCCCCCc--CCCCCCCCCEEEccCCccCCccc---cCCCCCCcEeeCC------------------CCCCCC
Q 015448           87 PTVLNVGKNKLRSMD--DVTSVVSLRALILNDNEIVSICK---LDQMKELNTLGMD------------------SYFFNL  143 (406)
Q Consensus        87 L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~---l~~L~~L~~L~Ls------------------~~l~~L  143 (406)
                      |..|+|..|....+.  ....+..|+.|+|++|++-.++.   +..++.|..|+++                  ..+++|
T Consensus       224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL  303 (505)
T KOG3207|consen  224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKL  303 (505)
T ss_pred             HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccc
Confidence            788888777422221  23456678888888887766552   5667777777666                  578899


Q ss_pred             CEEEcCCCCCCCchhHHHHHHhcCCCccccc--CcCCChhhh
Q 015448          144 NNLNLQGNPVAEYDKLAKKVKTLLPNLCIFN--ARPIDRITK  183 (406)
Q Consensus       144 ~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld--~~~~~~~~~  183 (406)
                      ++|++..|+|.+++.+.  -+..+++|..|.  ++++.....
T Consensus       304 ~~L~i~~N~I~~w~sl~--~l~~l~nlk~l~~~~n~ln~e~~  343 (505)
T KOG3207|consen  304 EYLNISENNIRDWRSLN--HLRTLENLKHLRITLNYLNKETD  343 (505)
T ss_pred             eeeecccCccccccccc--hhhccchhhhhhccccccccccc
Confidence            99999999998887644  245677777665  566654444

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.97  E-value=5.2e-11  Score=121.81  Aligned_cols=157  Identities=24%  Similarity=0.359  Sum_probs=127.8

Q ss_pred             CccccccccCCCC-CCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCC
Q 015448            2 TRLSTQQILKDNK-TCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG   80 (406)
Q Consensus         2 ~~Ls~n~i~~~~~-~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~   80 (406)
                      +.|..|+|..+.. ...+.+|++|+|++|.|+.+..+..++.|+.|++++|.|+.++.+..+..|+.+++++|.+..++.
T Consensus       100 l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~  179 (414)
T KOG0531|consen  100 LDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIEN  179 (414)
T ss_pred             eeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccCCccchhhhcccCCcchhhhhhh
Confidence            4677889999988 888999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             --CCCCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCC--CcEeeCC-----------CCCCCCCE
Q 015448           81 --IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKE--LNTLGMD-----------SYFFNLNN  145 (406)
Q Consensus        81 --l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~--L~~L~Ls-----------~~l~~L~~  145 (406)
                        +..+.+|+.+.+.+|.+..+..+..+..+..+++..|.|+.+.++..+..  |+.|+++           ..+..+..
T Consensus       180 ~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~  259 (414)
T KOG0531|consen  180 DELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPV  259 (414)
T ss_pred             hhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccccccccccccccccc
Confidence              58899999999999999887666555556666777777666655444444  5555555           24567777


Q ss_pred             EEcCCCCCCCchh
Q 015448          146 LNLQGNPVAEYDK  158 (406)
Q Consensus       146 L~Ls~N~i~~~~~  158 (406)
                      |++..|.+.....
T Consensus       260 l~~~~n~~~~~~~  272 (414)
T KOG0531|consen  260 LDLSSNRISNLEG  272 (414)
T ss_pred             cchhhcccccccc
Confidence            7888887766653

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.94  E-value=2.3e-11  Score=119.56  Aligned_cols=179  Identities=25%  Similarity=0.303  Sum_probs=124.9

Q ss_pred             CccccccccCCCC--CCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccC-CCCCCCCC--CC--------------
Q 015448            2 TRLSTQQILKDNK--TCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSS-NNLTSLEG--LK--------------   60 (406)
Q Consensus         2 ~~Ls~n~i~~~~~--~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~-N~l~~l~~--l~--------------   60 (406)
                      ++|..|+|..+.+  +..+.+|+.|+|++|.|+.|.  +|.+++.|..|-+-+ |.|+.++.  |.              
T Consensus        72 irLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~  151 (498)
T KOG4237|consen   72 IRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANH  151 (498)
T ss_pred             EEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhh
Confidence            5788899998875  456899999999999999995  888999888776655 88988752  33              


Q ss_pred             ----------CCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCCCCC-------------------------------
Q 015448           61 ----------HCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGKNKL-------------------------------   97 (406)
Q Consensus        61 ----------~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~i-------------------------------   97 (406)
                                .|++|..|.+..|.+..++  .|..+..++++.+..|.+                               
T Consensus       152 i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl  231 (498)
T KOG4237|consen  152 INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRL  231 (498)
T ss_pred             hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHH
Confidence                      4556666666666666555  255555555555544430                               


Q ss_pred             -----CC--------------------------Cc--CCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC-----
Q 015448           98 -----RS--------------------------MD--DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD-----  137 (406)
Q Consensus        98 -----~~--------------------------l~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls-----  137 (406)
                           ..                          .|  .|..+++|+.|+|++|.|+.+..  |..+..|+.|.|.     
T Consensus       232 ~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~  311 (498)
T KOG4237|consen  232 YYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE  311 (498)
T ss_pred             HHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH
Confidence                 00                          01  14556788888888888888763  7778888888877     


Q ss_pred             -------CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCccccc--CcCCChhhh
Q 015448          138 -------SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFN--ARPIDRITK  183 (406)
Q Consensus       138 -------~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld--~~~~~~~~~  183 (406)
                             .++..|..|+|.+|+|+++.+..   +..+..|..|+  .+|+....+
T Consensus       312 ~v~~~~f~~ls~L~tL~L~~N~it~~~~~a---F~~~~~l~~l~l~~Np~~CnC~  363 (498)
T KOG4237|consen  312 FVSSGMFQGLSGLKTLSLYDNQITTVAPGA---FQTLFSLSTLNLLSNPFNCNCR  363 (498)
T ss_pred             HHHHHhhhccccceeeeecCCeeEEEeccc---ccccceeeeeehccCcccCccc
Confidence                   67888999999999999886644   44555555444  345444433

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.92  E-value=1.1e-09  Score=106.92  Aligned_cols=138  Identities=28%  Similarity=0.351  Sum_probs=69.3

Q ss_pred             CCCccEEEeeCCCCCCC--------CCCCCCCCCcEEEccCCCCCCCC--CCCCC---CCCcEEEecCCCCCC-----CC
Q 015448           18 PNSIKSLSLTHKALSDV--------SCLTDFNNLERLDLSSNNLTSLE--GLKHC---VNLKWLSLVQNKLQS-----LK   79 (406)
Q Consensus        18 ~~~L~~L~Ls~n~l~~i--------~~l~~l~~L~~L~Ls~N~l~~l~--~l~~L---~~L~~L~Ls~N~l~~-----l~   79 (406)
                      .++++.|+++++.+...        ..+..+++|+.|+|++|.+....  .+..+   ++|+.|++++|.+..     +.
T Consensus        50 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~  129 (319)
T cd00116          50 QPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLA  129 (319)
T ss_pred             CCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHH
Confidence            34456666666555421        13344556666666666654321  12112   336666666665552     11


Q ss_pred             -CCCCC-CCCcEEEcCCCCCCC-----Cc-CCCCCCCCCEEEccCCccCCc-----c-ccCCCCCCcEeeCC--------
Q 015448           80 -GIEGL-SKPTVLNVGKNKLRS-----MD-DVTSVVSLRALILNDNEIVSI-----C-KLDQMKELNTLGMD--------  137 (406)
Q Consensus        80 -~l~~l-~~L~~L~Ls~N~i~~-----l~-~l~~l~~L~~L~Ls~N~i~~l-----~-~l~~L~~L~~L~Ls--------  137 (406)
                       .+..+ ++|+.|+|++|.++.     +. .+..+++|++|+|++|.++.-     . .+..+++|+.|+|+        
T Consensus       130 ~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  209 (319)
T cd00116         130 KGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG  209 (319)
T ss_pred             HHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHH
Confidence             23344 556666666666552     11 233445566666666655421     1 12333455555555        


Q ss_pred             --------CCCCCCCEEEcCCCCCCC
Q 015448          138 --------SYFFNLNNLNLQGNPVAE  155 (406)
Q Consensus       138 --------~~l~~L~~L~Ls~N~i~~  155 (406)
                              ..+++|++|++++|++..
T Consensus       210 ~~~l~~~~~~~~~L~~L~ls~n~l~~  235 (319)
T cd00116         210 ASALAETLASLKSLEVLNLGDNNLTD  235 (319)
T ss_pred             HHHHHHHhcccCCCCEEecCCCcCch
Confidence                    345567777777776665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.90  E-value=1.1e-09  Score=106.76  Aligned_cols=166  Identities=23%  Similarity=0.305  Sum_probs=115.9

Q ss_pred             CCCCccEEEeeCCCCCCCC--CCCCC---CCCcEEEccCCCCCCC------CCCCCC-CCCcEEEecCCCCCC-----CC
Q 015448           17 DPNSIKSLSLTHKALSDVS--CLTDF---NNLERLDLSSNNLTSL------EGLKHC-VNLKWLSLVQNKLQS-----LK   79 (406)
Q Consensus        17 ~~~~L~~L~Ls~n~l~~i~--~l~~l---~~L~~L~Ls~N~l~~l------~~l~~L-~~L~~L~Ls~N~l~~-----l~   79 (406)
                      .+++|+.|+|++|.+....  .+..+   ++|++|+|++|.++..      ..+..+ ++|+.|+|++|.++.     +.
T Consensus        79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~  158 (319)
T cd00116          79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA  158 (319)
T ss_pred             hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence            3678999999999887432  22222   5599999999988742      124556 889999999999882     22


Q ss_pred             -CCCCCCCCcEEEcCCCCCCC-----Cc-CCCCCCCCCEEEccCCccCCcc------ccCCCCCCcEeeCC---------
Q 015448           80 -GIEGLSKPTVLNVGKNKLRS-----MD-DVTSVVSLRALILNDNEIVSIC------KLDQMKELNTLGMD---------  137 (406)
Q Consensus        80 -~l~~l~~L~~L~Ls~N~i~~-----l~-~l~~l~~L~~L~Ls~N~i~~l~------~l~~L~~L~~L~Ls---------  137 (406)
                       .+..+++|++|+|++|.++.     ++ .+..+++|++|+|++|.++...      .+..+++|++|+++         
T Consensus       159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~  238 (319)
T cd00116         159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA  238 (319)
T ss_pred             HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence             36677889999999998874     11 3455678999999999886432      25667889999988         


Q ss_pred             ----CC----CCCCCEEEcCCCCCCCchhHH-HHHHhcCCCcccccCcC--CChhh
Q 015448          138 ----SY----FFNLNNLNLQGNPVAEYDKLA-KKVKTLLPNLCIFNARP--IDRIT  182 (406)
Q Consensus       138 ----~~----l~~L~~L~Ls~N~i~~~~~~~-~~~~~~lp~L~~Ld~~~--~~~~~  182 (406)
                          ..    .+.|++|++++|.++...... ...+..+++|+.++...  +....
T Consensus       239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~  294 (319)
T cd00116         239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG  294 (319)
T ss_pred             HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH
Confidence                11    379999999999997543211 12345567888777554  44443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.89  E-value=1.7e-10  Score=117.94  Aligned_cols=132  Identities=28%  Similarity=0.360  Sum_probs=98.1

Q ss_pred             cccccccCCC-CCCCCCCccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCC-CCCCCCCCcEEEecCCCCCCCC-
Q 015448            4 LSTQQILKDN-KTCDPNSIKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLE-GLKHCVNLKWLSLVQNKLQSLK-   79 (406)
Q Consensus         4 Ls~n~i~~~~-~~~~~~~L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~L~~L~~L~Ls~N~l~~l~-   79 (406)
                      |..|.|..+. ..+.+..|+.|+|+.|.++.+| .+..| -|++|.+++|.++.+| .++.++.|..|+.+.|.|.++| 
T Consensus       105 Ly~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slps  183 (722)
T KOG0532|consen  105 LYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPS  183 (722)
T ss_pred             HHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcC-cceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchH
Confidence            3455555553 4566788888888888888887 44433 4788888888888886 4777788888888888888888 


Q ss_pred             CCCCCCCCcEEEcCCCCCCCCc-CCCCCCCCCEEEccCCccCCccc-cCCCCCCcEeeCC
Q 015448           80 GIEGLSKPTVLNVGKNKLRSMD-DVTSVVSLRALILNDNEIVSICK-LDQMKELNTLGMD  137 (406)
Q Consensus        80 ~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~N~i~~l~~-l~~L~~L~~L~Ls  137 (406)
                      .++.+.+|+.|++..|.+..+| .+..| .|..||++.|+|+.+|. |..|+.|++|-|.
T Consensus       184 ql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~Le  242 (722)
T KOG0532|consen  184 QLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLE  242 (722)
T ss_pred             HhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeec
Confidence            5778888888888888877776 35533 47778888888888774 7777888877775

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.79  E-value=1.5e-09  Score=103.67  Aligned_cols=174  Identities=22%  Similarity=0.301  Sum_probs=123.9

Q ss_pred             CCCccEEEeeCCCCCCCC----CCCCCCCCcEEEccCCCCCCC-CCC-CCCCCCcEEEecCCCCCC--CC-CCCCCCCCc
Q 015448           18 PNSIKSLSLTHKALSDVS----CLTDFNNLERLDLSSNNLTSL-EGL-KHCVNLKWLSLVQNKLQS--LK-GIEGLSKPT   88 (406)
Q Consensus        18 ~~~L~~L~Ls~n~l~~i~----~l~~l~~L~~L~Ls~N~l~~l-~~l-~~L~~L~~L~Ls~N~l~~--l~-~l~~l~~L~   88 (406)
                      .+.++.|+|.+|.|++++    .+.++|.|++|+|+.|.+... ..+ ..+.+|++|-|.+..+.-  .. .+..+|.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            467888999999999875    567899999999999988753 233 357789999998887752  22 366677777


Q ss_pred             EEEcCCCCCCCC----------c-C---C-----------------CCCCCCCEEEccCCccCCccc---cCCCCCCcEe
Q 015448           89 VLNVGKNKLRSM----------D-D---V-----------------TSVVSLRALILNDNEIVSICK---LDQMKELNTL  134 (406)
Q Consensus        89 ~L~Ls~N~i~~l----------~-~---l-----------------~~l~~L~~L~Ls~N~i~~l~~---l~~L~~L~~L  134 (406)
                      .|.++.|.+..+          . .   +                 .-++++..+.+..|+|.....   ...++.+..|
T Consensus       150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L  229 (418)
T KOG2982|consen  150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL  229 (418)
T ss_pred             hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence            777777744321          0 0   0                 123556666666666655442   5556666677


Q ss_pred             eCC-------------CCCCCCCEEEcCCCCCCCc---hhHHHHHHhcCCCcccccCcCCChhhhhhhhhhhc
Q 015448          135 GMD-------------SYFFNLNNLNLQGNPVAEY---DKLAKKVKTLLPNLCIFNARPIDRITKNEKDNIVD  191 (406)
Q Consensus       135 ~Ls-------------~~l~~L~~L~Ls~N~i~~~---~~~~~~~~~~lp~L~~Ld~~~~~~~~~~~~~~~l~  191 (406)
                      +|+             ..++.|..|.++.||+.+.   ..-+..++.+++++++||+..++..++...+..+-
T Consensus       230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGskIss~er~dSEr~fV  302 (418)
T KOG2982|consen  230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGSKISSRERKDSERRFV  302 (418)
T ss_pred             hhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCcccchhhhhhhHHHHH
Confidence            776             7899999999999999764   12223367899999999999999888887776554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.63  E-value=1.7e-08  Score=98.23  Aligned_cols=160  Identities=20%  Similarity=0.236  Sum_probs=94.8

Q ss_pred             CCccEEEeeCCCCCC--CC----CCCCCCCCcEEEccCCCCCCCC---------------CCCCCCCCcEEEecCCCCCC
Q 015448           19 NSIKSLSLTHKALSD--VS----CLTDFNNLERLDLSSNNLTSLE---------------GLKHCVNLKWLSLVQNKLQS   77 (406)
Q Consensus        19 ~~L~~L~Ls~n~l~~--i~----~l~~l~~L~~L~Ls~N~l~~l~---------------~l~~L~~L~~L~Ls~N~l~~   77 (406)
                      +.|+.|+||.|.|..  ++    .+..+..|++|.|++|.+....               -...-+.|+++...+|++.+
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen  171 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN  171 (382)
T ss_pred             CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence            367777777777643  22    3456677777777777765431               13345667777777777765


Q ss_pred             CC------CCCCCCCCcEEEcCCCCCCC--C----cCCCCCCCCCEEEccCCccCCcc------ccCCCCCCcEeeCC--
Q 015448           78 LK------GIEGLSKPTVLNVGKNKLRS--M----DDVTSVVSLRALILNDNEIVSIC------KLDQMKELNTLGMD--  137 (406)
Q Consensus        78 l~------~l~~l~~L~~L~Ls~N~i~~--l----~~l~~l~~L~~L~Ls~N~i~~l~------~l~~L~~L~~L~Ls--  137 (406)
                      -+      .|..++.|+.+.++.|.|..  +    ..+.++++|+.|+|.+|-++.-.      .+..++.|+.|+++  
T Consensus       172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc  251 (382)
T KOG1909|consen  172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC  251 (382)
T ss_pred             ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence            43      25566677777777777654  1    24667777777777777665432      15555666666665  


Q ss_pred             ---------------CCCCCCCEEEcCCCCCCCchhHH-HHHHhcCCCcccccCcCC
Q 015448          138 ---------------SYFFNLNNLNLQGNPVAEYDKLA-KKVKTLLPNLCIFNARPI  178 (406)
Q Consensus       138 ---------------~~l~~L~~L~Ls~N~i~~~~~~~-~~~~~~lp~L~~Ld~~~~  178 (406)
                                     ...|+|+.|.|.+|.|+...... ...+...|.|..|+.+.+
T Consensus       252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN  308 (382)
T KOG1909|consen  252 LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN  308 (382)
T ss_pred             ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence                           34666677777776665543221 112334566665554443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.60  E-value=2.9e-08  Score=73.62  Aligned_cols=53  Identities=36%  Similarity=0.508  Sum_probs=20.5

Q ss_pred             CcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCCC
Q 015448           43 LERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGKN   95 (406)
Q Consensus        43 L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N   95 (406)
                      |++|+|++|.|+.++  .|..+++|++|+|++|.|+.++  .|..+++|++|++++|
T Consensus         3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            334444444443333  1333444444444444443333  1333333444443333

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.58  E-value=3.8e-08  Score=72.96  Aligned_cols=57  Identities=30%  Similarity=0.447  Sum_probs=45.9

Q ss_pred             CCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCCCCCCCCc--CCCCCCCCCEEEccCCcc
Q 015448           63 VNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGKNKLRSMD--DVTSVVSLRALILNDNEI  119 (406)
Q Consensus        63 ~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i  119 (406)
                      ++|++|+|++|.|+.+|  .|..+++|++|+|++|.|+.++  .+..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            56888888888888887  4778888888888888888875  377888888888888865

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.51  E-value=4.9e-09  Score=99.29  Aligned_cols=117  Identities=26%  Similarity=0.304  Sum_probs=97.3

Q ss_pred             CCCCcEEEecCCCCCCCCCCCCCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCCCCCC
Q 015448           62 CVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFF  141 (406)
Q Consensus        62 L~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls~~l~  141 (406)
                      |.+.+.|++-+|.|.+|.-+..|+.|++|.|+-|.|+++..+..++.|..|.|..|.|.++..+..|.         ++|
T Consensus        18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLk---------nlp   88 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLK---------NLP   88 (388)
T ss_pred             HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHh---------cCc
Confidence            55667788888888887777788888888888888888888888888999999999888877666554         567


Q ss_pred             CCCEEEcCCCCCCCc--hhHHHHHHhcCCCcccccCcCCChhhhhhhh
Q 015448          142 NLNNLNLQGNPVAEY--DKLAKKVKTLLPNLCIFNARPIDRITKNEKD  187 (406)
Q Consensus       142 ~L~~L~Ls~N~i~~~--~~~~~~~~~~lp~L~~Ld~~~~~~~~~~~~~  187 (406)
                      +|+.|.|..||.+.-  ..|+..++..||+|+.||..+++..+-..+.
T Consensus        89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~VteeEle~AL  136 (388)
T KOG2123|consen   89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVTEEELEEAL  136 (388)
T ss_pred             hhhhHhhccCCcccccchhHHHHHHHHcccchhccCccccHHHHHHHH
Confidence            999999999998654  6789999999999999999999987766554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.50  E-value=2.8e-09  Score=111.64  Aligned_cols=155  Identities=25%  Similarity=0.312  Sum_probs=111.5

Q ss_pred             CCCccEEEeeCCCCCCCCCC---------------------------C------CCCCCcEEEccCCCCCCCC-CCCCCC
Q 015448           18 PNSIKSLSLTHKALSDVSCL---------------------------T------DFNNLERLDLSSNNLTSLE-GLKHCV   63 (406)
Q Consensus        18 ~~~L~~L~Ls~n~l~~i~~l---------------------------~------~l~~L~~L~Ls~N~l~~l~-~l~~L~   63 (406)
                      +..|++|.|.++.|.....+                           +      .+..|.+.++++|.+..+. .+.-++
T Consensus       108 F~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLqll~  187 (1096)
T KOG1859|consen  108 FRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESLQLLP  187 (1096)
T ss_pred             ccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHHHHHH
Confidence            67899999999887543111                           1      1223556667777777664 466778


Q ss_pred             CCcEEEecCCCCCCCCCCCCCCCCcEEEcCCCCCCCCcCCCCC-CCCCEEEccCCccCCccccCCCCCCcEeeCCCCCCC
Q 015448           64 NLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSV-VSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFN  142 (406)
Q Consensus        64 ~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~l-~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls~~l~~  142 (406)
                      .|+.|+|++|+++.+..+..|+.|.+|+|++|.++.+|.+..- ..|..|+|++|.++.+.++.+|.            +
T Consensus       188 ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~Lk------------s  255 (1096)
T KOG1859|consen  188 ALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLK------------S  255 (1096)
T ss_pred             HhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhh------------h
Confidence            8888999999888888888888899999999988888865421 24888889998888877766554            7


Q ss_pred             CCEEEcCCCCCCCchhHHHHHHhcCCCcc--cccCcCCChhhhhhh
Q 015448          143 LNNLNLQGNPVAEYDKLAKKVKTLLPNLC--IFNARPIDRITKNEK  186 (406)
Q Consensus       143 L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~--~Ld~~~~~~~~~~~~  186 (406)
                      |..|+|+.|-|.....+.  .+..+..|.  .|.++|+.+.+...+
T Consensus       256 L~~LDlsyNll~~hseL~--pLwsLs~L~~L~LeGNPl~c~p~hRa  299 (1096)
T KOG1859|consen  256 LYGLDLSYNLLSEHSELE--PLWSLSSLIVLWLEGNPLCCAPWHRA  299 (1096)
T ss_pred             hhccchhHhhhhcchhhh--HHHHHHHHHHHhhcCCccccCHHHHH
Confidence            788999999998776543  244455555  467888876665544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=98.48  E-value=8.1e-08  Score=90.39  Aligned_cols=114  Identities=26%  Similarity=0.368  Sum_probs=83.6

Q ss_pred             CCCCcEEEecCCCCCCCCCCCCCCCCcEEEcCCC--CCCC-Cc-CCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC
Q 015448           62 CVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKN--KLRS-MD-DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD  137 (406)
Q Consensus        62 L~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N--~i~~-l~-~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls  137 (406)
                      +..|+.|.+.+..++++.++..|++|+.|.++.|  ++.. ++ -...+++|++|+|++|.|..+..+..++        
T Consensus        42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~--------  113 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK--------  113 (260)
T ss_pred             ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhh--------
Confidence            4455555566666666666666777777777777  3322 33 2344588888888888888766666665        


Q ss_pred             CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCcCCChhhhh
Q 015448          138 SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPIDRITKN  184 (406)
Q Consensus       138 ~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~~~~~~~~~  184 (406)
                       .+.+|..|++..|..+....|+..++..+|+|.+||+..+...+..
T Consensus       114 -~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea~  159 (260)
T KOG2739|consen  114 -ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEAP  159 (260)
T ss_pred             -hhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCcccc
Confidence             3458899999999999999999999999999999999887755544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.44  E-value=6.5e-08  Score=94.23  Aligned_cols=138  Identities=25%  Similarity=0.325  Sum_probs=82.8

Q ss_pred             CCCCCCCcEEEccCCCCCCC--CC----CCCCCCCcEEEecCCCCCCCC---------------CCCCCCCCcEEEcCCC
Q 015448           37 LTDFNNLERLDLSSNNLTSL--EG----LKHCVNLKWLSLVQNKLQSLK---------------GIEGLSKPTVLNVGKN   95 (406)
Q Consensus        37 l~~l~~L~~L~Ls~N~l~~l--~~----l~~L~~L~~L~Ls~N~l~~l~---------------~l~~l~~L~~L~Ls~N   95 (406)
                      |..++.|++|+||.|.|..-  ++    +..+..|++|+|++|.+....               -.+.-+.|+++..++|
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN  167 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN  167 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence            34566777777777766532  22    455677777777777665321               1334456777777777


Q ss_pred             CCCCCc------CCCCCCCCCEEEccCCccCCcc------ccCCCCCCcEeeCC----------------CCCCCCCEEE
Q 015448           96 KLRSMD------DVTSVVSLRALILNDNEIVSIC------KLDQMKELNTLGMD----------------SYFFNLNNLN  147 (406)
Q Consensus        96 ~i~~l~------~l~~l~~L~~L~Ls~N~i~~l~------~l~~L~~L~~L~Ls----------------~~l~~L~~L~  147 (406)
                      ++.+-+      .+...+.|+.+.+..|.|..-.      .+..++.|+.|||.                ..+++|+.|+
T Consensus       168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~  247 (382)
T KOG1909|consen  168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN  247 (382)
T ss_pred             ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence            766532      2455567777777777664311      25667777777776                5666777777


Q ss_pred             cCCCCCCCchh--HHHHHHhcCCCccccc
Q 015448          148 LQGNPVAEYDK--LAKKVKTLLPNLCIFN  174 (406)
Q Consensus       148 Ls~N~i~~~~~--~~~~~~~~lp~L~~Ld  174 (406)
                      +++|.+..-..  +...+....|+|++|.
T Consensus       248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~  276 (382)
T KOG1909|consen  248 LGDCLLENEGAIAFVDALKESAPSLEVLE  276 (382)
T ss_pred             ccccccccccHHHHHHHHhccCCCCceec
Confidence            77777765532  2223344566777665

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.43  E-value=3.3e-07  Score=83.39  Aligned_cols=100  Identities=24%  Similarity=0.304  Sum_probs=60.8

Q ss_pred             EEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCC-CC-CCCCCCcEEEcCCCCCCCC---cCCCCCCCCCEEEccCCcc
Q 015448           45 RLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK-GI-EGLSKPTVLNVGKNKLRSM---DDVTSVVSLRALILNDNEI  119 (406)
Q Consensus        45 ~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~-~l-~~l~~L~~L~Ls~N~i~~l---~~l~~l~~L~~L~Ls~N~i  119 (406)
                      .+||++|.|..++.|..++.|.+|.|++|+|+.|. .+ ..+++|..|.|.+|.|..+   ..+..++.|++|.+-+|++
T Consensus        46 ~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv  125 (233)
T KOG1644|consen   46 AIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPV  125 (233)
T ss_pred             eecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCch
Confidence            35666666666666666666677777777776665 33 3345677777777766553   3566777788888777777


Q ss_pred             CCccccCCCCCCcEeeCCCCCCCCCEEEcCCC
Q 015448          120 VSICKLDQMKELNTLGMDSYFFNLNNLNLQGN  151 (406)
Q Consensus       120 ~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N  151 (406)
                      +....-..    -.|   ..+|+|+.|+++.-
T Consensus       126 ~~k~~YR~----yvl---~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  126 EHKKNYRL----YVL---YKLPSLRTLDFQKV  150 (233)
T ss_pred             hcccCcee----EEE---EecCcceEeehhhh
Confidence            66543100    000   24567777776643

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.42  E-value=2.4e-07  Score=102.67  Aligned_cols=112  Identities=26%  Similarity=0.382  Sum_probs=84.9

Q ss_pred             ccccCCCCCCCCCCccEEEeeCCC--CCCCC--CCCCCCCCcEEEccCCC-CCCCCC-CCCCCCCcEEEecCCCCCCCC-
Q 015448            7 QQILKDNKTCDPNSIKSLSLTHKA--LSDVS--CLTDFNNLERLDLSSNN-LTSLEG-LKHCVNLKWLSLVQNKLQSLK-   79 (406)
Q Consensus         7 n~i~~~~~~~~~~~L~~L~Ls~n~--l~~i~--~l~~l~~L~~L~Ls~N~-l~~l~~-l~~L~~L~~L~Ls~N~l~~l~-   79 (406)
                      +++..+......+.|++|-+..|.  +..++  .|..++.|++|||++|. +..+|. ++.|.+|++|+|+++.|..+| 
T Consensus       533 ~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~  612 (889)
T KOG4658|consen  533 NKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPS  612 (889)
T ss_pred             cchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccch
Confidence            344444444445578888888886  66666  48889999999999775 777875 888999999999999999999 


Q ss_pred             CCCCCCCCcEEEcCCCCC-CCCcCCC-CCCCCCEEEccCCc
Q 015448           80 GIEGLSKPTVLNVGKNKL-RSMDDVT-SVVSLRALILNDNE  118 (406)
Q Consensus        80 ~l~~l~~L~~L~Ls~N~i-~~l~~l~-~l~~L~~L~Ls~N~  118 (406)
                      ++..|..|.+|++..+.- ..++.+. .+++|++|.+....
T Consensus       613 ~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  613 GLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             HHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            789999999999988763 3455543 48888888876654

>PLN03150 hypothetical protein; Provisional

Probab=98.29  E-value=1.4e-06  Score=93.89  Aligned_cols=103  Identities=18%  Similarity=0.321  Sum_probs=70.9

Q ss_pred             CCcEEEccCCCCCCC-C-CCCCCCCCcEEEecCCCCC-CCC-CCCCCCCCcEEEcCCCCCCC-Cc-CCCCCCCCCEEEcc
Q 015448           42 NLERLDLSSNNLTSL-E-GLKHCVNLKWLSLVQNKLQ-SLK-GIEGLSKPTVLNVGKNKLRS-MD-DVTSVVSLRALILN  115 (406)
Q Consensus        42 ~L~~L~Ls~N~l~~l-~-~l~~L~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls  115 (406)
                      .++.|+|++|.+... | .+..|++|+.|+|++|.|. .+| .+..+++|+.|+|++|.++. +| .+..+++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            367788888887643 3 3777888888888888886 566 57788888888888888875 55 47778888888888


Q ss_pred             CCccCC-ccc-cCCCCCCcEeeCCCCCCCCCEEEcCCCCCCC
Q 015448          116 DNEIVS-ICK-LDQMKELNTLGMDSYFFNLNNLNLQGNPVAE  155 (406)
Q Consensus       116 ~N~i~~-l~~-l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~  155 (406)
                      +|.++. +|. +..+           +.++..+++.+|+..+
T Consensus       499 ~N~l~g~iP~~l~~~-----------~~~~~~l~~~~N~~lc  529 (623)
T PLN03150        499 GNSLSGRVPAALGGR-----------LLHRASFNFTDNAGLC  529 (623)
T ss_pred             CCcccccCChHHhhc-----------cccCceEEecCCcccc
Confidence            887763 332 2211           1245566777776433

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.28  E-value=7.6e-09  Score=98.02  Aligned_cols=97  Identities=30%  Similarity=0.368  Sum_probs=75.9

Q ss_pred             CCccccccccCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCC-
Q 015448            1 MTRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK-   79 (406)
Q Consensus         1 m~~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~-   79 (406)
                      |++|+...+.......++.+++.|++.++.|++|+.+..|+.|++|.|+-|.|+.+.+|..|.+|++|+|..|.|.++. 
T Consensus         1 M~kLTe~mV~~raK~sdl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldE   80 (388)
T KOG2123|consen    1 MVKLTESMVYIRAKCSDLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDE   80 (388)
T ss_pred             CchHHHHHHHHHHHhhHHHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHH
Confidence            5566655554444445578889999999999999988889999999999999999988888999999999988888766 


Q ss_pred             --CCCCCCCCcEEEcCCCCC
Q 015448           80 --GIEGLSKPTVLNVGKNKL   97 (406)
Q Consensus        80 --~l~~l~~L~~L~Ls~N~i   97 (406)
                        -+.++++|+.|.|..|.-
T Consensus        81 L~YLknlpsLr~LWL~ENPC  100 (388)
T KOG2123|consen   81 LEYLKNLPSLRTLWLDENPC  100 (388)
T ss_pred             HHHHhcCchhhhHhhccCCc
Confidence              256666666666666543

>PLN03150 hypothetical protein; Provisional

Probab=98.24  E-value=2.4e-06  Score=91.95  Aligned_cols=78  Identities=24%  Similarity=0.429  Sum_probs=37.8

Q ss_pred             ccEEEeeCCCCCCC-C-CCCCCCCCcEEEccCCCCC-CCC-CCCCCCCCcEEEecCCCCC-CCC-CCCCCCCCcEEEcCC
Q 015448           21 IKSLSLTHKALSDV-S-CLTDFNNLERLDLSSNNLT-SLE-GLKHCVNLKWLSLVQNKLQ-SLK-GIEGLSKPTVLNVGK   94 (406)
Q Consensus        21 L~~L~Ls~n~l~~i-~-~l~~l~~L~~L~Ls~N~l~-~l~-~l~~L~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~Ls~   94 (406)
                      ++.|+|++|.+... + .+..+++|+.|+|++|.|. .+| .+..+++|+.|+|++|.++ .+| .+..|++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            44455555555432 2 4444555555555555554 223 2445555555555555554 344 344555555555555


Q ss_pred             CCCC
Q 015448           95 NKLR   98 (406)
Q Consensus        95 N~i~   98 (406)
                      |.++
T Consensus       500 N~l~  503 (623)
T PLN03150        500 NSLS  503 (623)
T ss_pred             Cccc
Confidence            5544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.21  E-value=1e-06  Score=61.09  Aligned_cols=37  Identities=43%  Similarity=0.590  Sum_probs=15.2

Q ss_pred             CCcEEEccCCCCCCCCC-CCCCCCCcEEEecCCCCCCC
Q 015448           42 NLERLDLSSNNLTSLEG-LKHCVNLKWLSLVQNKLQSL   78 (406)
Q Consensus        42 ~L~~L~Ls~N~l~~l~~-l~~L~~L~~L~Ls~N~l~~l   78 (406)
                      +|++|+|++|.|+.+++ +.+|++|++|+|++|.|+++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            34444444444444443 44444444444444444433

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.19  E-value=1.4e-06  Score=60.41  Aligned_cols=38  Identities=26%  Similarity=0.436  Sum_probs=17.5

Q ss_pred             CCcEEEecCCCCCCCCC-CCCCCCCcEEEcCCCCCCCCc
Q 015448           64 NLKWLSLVQNKLQSLKG-IEGLSKPTVLNVGKNKLRSMD  101 (406)
Q Consensus        64 ~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~i~~l~  101 (406)
                      +|++|+|++|+|+.+|+ +..|++|++|++++|.|++++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            44455555555555443 444444444444444444443

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.07  E-value=5e-06  Score=92.30  Aligned_cols=123  Identities=22%  Similarity=0.266  Sum_probs=92.8

Q ss_pred             CCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCC--CCCCCC--CCCCCCCcEEEecCC-CCCCCC-CCCCCCCCc
Q 015448           15 TCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNN--LTSLEG--LKHCVNLKWLSLVQN-KLQSLK-GIEGLSKPT   88 (406)
Q Consensus        15 ~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~--l~~l~~--l~~L~~L~~L~Ls~N-~l~~l~-~l~~l~~L~   88 (406)
                      ......++.+.+.+|.+..++.-..++.|++|-+..|.  +..++.  |..++.|++|||++| .+..+| .++.|-+|+
T Consensus       519 ~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr  598 (889)
T KOG4658|consen  519 VKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR  598 (889)
T ss_pred             ccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence            34456778888888888887755667789899888886  666665  788999999999976 456788 688889999


Q ss_pred             EEEcCCCCCCCCc-CCCCCCCCCEEEccCCcc-CCccc-cCCCCCCcEeeCC
Q 015448           89 VLNVGKNKLRSMD-DVTSVVSLRALILNDNEI-VSICK-LDQMKELNTLGMD  137 (406)
Q Consensus        89 ~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~N~i-~~l~~-l~~L~~L~~L~Ls  137 (406)
                      +|+|+++.|..+| ++..+..|.+|++..+.. ..++. +..|.+|++|.+.
T Consensus       599 yL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~  650 (889)
T KOG4658|consen  599 YLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP  650 (889)
T ss_pred             cccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEee
Confidence            9999999999888 588888999999887753 33333 3336666666554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.04  E-value=2.3e-06  Score=92.69  Aligned_cols=149  Identities=19%  Similarity=0.205  Sum_probs=83.8

Q ss_pred             CCccEEEeeCCCCCC--CC--CCCCCCCCcEEEccCCCCCCCC---CCCCCCCCcEEEecCCCCCCCCCCCCCCCCcEEE
Q 015448           19 NSIKSLSLTHKALSD--VS--CLTDFNNLERLDLSSNNLTSLE---GLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLN   91 (406)
Q Consensus        19 ~~L~~L~Ls~n~l~~--i~--~l~~l~~L~~L~Ls~N~l~~l~---~l~~L~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~   91 (406)
                      .+|++|++++...-.  ++  .-..||+|+.|.+++-.+..-.   -..++|+|..||+|+++|+.+.+++.|.+|++|.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~  201 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS  201 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence            356666666644321  11  2235677777777666554332   2456677777777777777776677777777776


Q ss_pred             cCCCCCCCCc---CCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhHHHHHHhcCC
Q 015448           92 VGKNKLRSMD---DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLP  168 (406)
Q Consensus        92 Ls~N~i~~l~---~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp  168 (406)
                      +.+=.+....   .+..|++|++||+|.......+.+.    .+++.....+|+|+.|+.+++.+...--  ..++...|
T Consensus       202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii----~qYlec~~~LpeLrfLDcSgTdi~~~~l--e~ll~sH~  275 (699)
T KOG3665|consen  202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKII----EQYLECGMVLPELRFLDCSGTDINEEIL--EELLNSHP  275 (699)
T ss_pred             ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHH----HHHHHhcccCccccEEecCCcchhHHHH--HHHHHhCc
Confidence            6665554422   4566677777777665443322100    0011111467888888888877754321  23445566


Q ss_pred             Ccccc
Q 015448          169 NLCIF  173 (406)
Q Consensus       169 ~L~~L  173 (406)
                      +|+.+
T Consensus       276 ~L~~i  280 (699)
T KOG3665|consen  276 NLQQI  280 (699)
T ss_pred             cHhhh
Confidence            66533

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.01  E-value=2.6e-07  Score=79.40  Aligned_cols=128  Identities=26%  Similarity=0.329  Sum_probs=75.4

Q ss_pred             CcEEEccCCCCCCCC----CCCCCCCCcEEEecCCCCCCCC-CCC-CCCCCcEEEcCCCCCCCCc-CCCCCCCCCEEEcc
Q 015448           43 LERLDLSSNNLTSLE----GLKHCVNLKWLSLVQNKLQSLK-GIE-GLSKPTVLNVGKNKLRSMD-DVTSVVSLRALILN  115 (406)
Q Consensus        43 L~~L~Ls~N~l~~l~----~l~~L~~L~~L~Ls~N~l~~l~-~l~-~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls  115 (406)
                      +..|+|+.|+|-.++    .+.....|..++|++|.+..+| .|. .++.+++|+|++|.|+.+| .+..++.|+.|+++
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~  108 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR  108 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence            445566666655443    1445556666677777777666 332 3346677777777777766 46677777777777


Q ss_pred             CCccCCccc-cCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCcCCChhhhh
Q 015448          116 DNEIVSICK-LDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPIDRITKN  184 (406)
Q Consensus       116 ~N~i~~l~~-l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~~~~~~~~~  184 (406)
                      .|.+...+. +..|            .+|-.|+..+|.+..++.-  .+...++.|.-+...|+....+.
T Consensus       109 ~N~l~~~p~vi~~L------------~~l~~Lds~~na~~eid~d--l~~s~~~al~~lgnepl~~~~~~  164 (177)
T KOG4579|consen  109 FNPLNAEPRVIAPL------------IKLDMLDSPENARAEIDVD--LFYSSLPALIKLGNEPLGDETKK  164 (177)
T ss_pred             cCccccchHHHHHH------------HhHHHhcCCCCccccCcHH--HhccccHHHHHhcCCcccccCcc
Confidence            777766553 2222            2455666677777666542  23445555555555555544443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.97  E-value=2.8e-06  Score=80.14  Aligned_cols=104  Identities=25%  Similarity=0.318  Sum_probs=78.6

Q ss_pred             CCccEEEeeCCCCCC---CC-CCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCC---CCC-CCCCCCCCcEE
Q 015448           19 NSIKSLSLTHKALSD---VS-CLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQ---SLK-GIEGLSKPTVL   90 (406)
Q Consensus        19 ~~L~~L~Ls~n~l~~---i~-~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~---~l~-~l~~l~~L~~L   90 (406)
                      ..++.+.+. |.++.   +. ....+..|+.|.+.+..++.+..|..|++|+.|.++.|.+.   .++ ....+++|++|
T Consensus        18 ~~v~~l~lD-~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l   96 (260)
T KOG2739|consen   18 EQVDELFLD-NARSGAGKLGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVL   96 (260)
T ss_pred             hhhhhhhcc-hhhhcCCCcccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEE
Confidence            345555555 33332   22 44567789999999999999988999999999999999544   344 34566999999


Q ss_pred             EcCCCCCCCC---cCCCCCCCCCEEEccCCccCCcc
Q 015448           91 NVGKNKLRSM---DDVTSVVSLRALILNDNEIVSIC  123 (406)
Q Consensus        91 ~Ls~N~i~~l---~~l~~l~~L~~L~Ls~N~i~~l~  123 (406)
                      +|++|+|..+   +++..+.+|..|++.+|..+.+.
T Consensus        97 ~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~  132 (260)
T KOG2739|consen   97 NLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLD  132 (260)
T ss_pred             eecCCccccccccchhhhhcchhhhhcccCCccccc
Confidence            9999998764   45677888999999999887754

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.88  E-value=6e-07  Score=77.22  Aligned_cols=105  Identities=18%  Similarity=0.226  Sum_probs=84.1

Q ss_pred             CccEEEeeCCCCCCCC----CCCCCCCCcEEEccCCCCCCCCC-C-CCCCCCcEEEecCCCCCCCC-CCCCCCCCcEEEc
Q 015448           20 SIKSLSLTHKALSDVS----CLTDFNNLERLDLSSNNLTSLEG-L-KHCVNLKWLSLVQNKLQSLK-GIEGLSKPTVLNV   92 (406)
Q Consensus        20 ~L~~L~Ls~n~l~~i~----~l~~l~~L~~L~Ls~N~l~~l~~-l-~~L~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L   92 (406)
                      .+..|+|++|.|-.++    .+.....|...+|++|.+..+|. | ..++.++.|+|++|.|+.+| .+..++.|+.|++
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl  107 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL  107 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence            3556788888776654    45666788888999999998874 4 34568899999999999999 6889999999999


Q ss_pred             CCCCCCCCc-CCCCCCCCCEEEccCCccCCccc
Q 015448           93 GKNKLRSMD-DVTSVVSLRALILNDNEIVSICK  124 (406)
Q Consensus        93 s~N~i~~l~-~l~~l~~L~~L~Ls~N~i~~l~~  124 (406)
                      +.|.|...| .+..+.+|-.|+..+|.+..++.
T Consensus       108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~  140 (177)
T KOG4579|consen  108 RFNPLNAEPRVIAPLIKLDMLDSPENARAEIDV  140 (177)
T ss_pred             ccCccccchHHHHHHHhHHHhcCCCCccccCcH
Confidence            999998876 35568888889999988877764

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.81  E-value=8.9e-06  Score=78.17  Aligned_cols=176  Identities=21%  Similarity=0.261  Sum_probs=106.8

Q ss_pred             ccEEEeeCCCCCCCC---CC-CCCCCCcEEEccCCCCCCCCC----CCCCCCCcEEEecCCCCCC-CCCC-CCCCCCcEE
Q 015448           21 IKSLSLTHKALSDVS---CL-TDFNNLERLDLSSNNLTSLEG----LKHCVNLKWLSLVQNKLQS-LKGI-EGLSKPTVL   90 (406)
Q Consensus        21 L~~L~Ls~n~l~~i~---~l-~~l~~L~~L~Ls~N~l~~l~~----l~~L~~L~~L~Ls~N~l~~-l~~l-~~l~~L~~L   90 (406)
                      +..|.+.++.|....   .| ..+..+..|||.+|.|++.+.    +.+||.|++|+|+.|.+.+ |..+ ..+.+|++|
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l  126 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL  126 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence            445667777776654   22 356789999999999998853    6789999999999999874 3344 356689999


Q ss_pred             EcCCCCCCC--Cc-CCCCCCCCCEEEccCCccCC----------cc-c---cCCCCCCcEeeCC-----CCCCCCCEEEc
Q 015448           91 NVGKNKLRS--MD-DVTSVVSLRALILNDNEIVS----------IC-K---LDQMKELNTLGMD-----SYFFNLNNLNL  148 (406)
Q Consensus        91 ~Ls~N~i~~--l~-~l~~l~~L~~L~Ls~N~i~~----------l~-~---l~~L~~L~~L~Ls-----~~l~~L~~L~L  148 (406)
                      .|.+..+.-  .. .+..+|.++.|+++.|.+..          +. .   +..++++..+.+.     .-+|++..+-+
T Consensus       127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v  206 (418)
T KOG2982|consen  127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFV  206 (418)
T ss_pred             EEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheee
Confidence            998887643  22 35567777777777774432          22 1   1111221111111     56777888888


Q ss_pred             CCCCCCCchhHHHHHHhcCCCcccccCc--CCChhhhhhhhhhhcccCCCCC
Q 015448          149 QGNPVAEYDKLAKKVKTLLPNLCIFNAR--PIDRITKNEKDNIVDKVNDSSN  198 (406)
Q Consensus       149 s~N~i~~~~~~~~~~~~~lp~L~~Ld~~--~~~~~~~~~~~~~l~~~~d~~~  198 (406)
                      ..||+.+....  .-...+|.+..|+..  .+...........++++.|+..
T Consensus       207 ~e~PlK~~s~e--k~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv  256 (418)
T KOG2982|consen  207 CEGPLKTESSE--KGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRV  256 (418)
T ss_pred             ecCcccchhhc--ccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeec
Confidence            88887665431  123455666555543  3444444444444444334433

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.74  E-value=3.3e-05  Score=73.53  Aligned_cols=162  Identities=17%  Similarity=0.207  Sum_probs=92.7

Q ss_pred             CCCccEEEeeCCCCCCC-----C-CCCCCCCCcEEEccCCCCCCC------------CCCCCCCCCcEEEecCCCCCC-C
Q 015448           18 PNSIKSLSLTHKALSDV-----S-CLTDFNNLERLDLSSNNLTSL------------EGLKHCVNLKWLSLVQNKLQS-L   78 (406)
Q Consensus        18 ~~~L~~L~Ls~n~l~~i-----~-~l~~l~~L~~L~Ls~N~l~~l------------~~l~~L~~L~~L~Ls~N~l~~-l   78 (406)
                      +..++.++||+|.|..-     . ++.+-.+|++.+++.-.....            +.+..||+|+..+||.|.|.. .
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            55677888888877542     1 455566666666665433321            235567777777777776652 2


Q ss_pred             C-C----CCCCCCCcEEEcCCCCCCCCcC---------------CCCCCCCCEEEccCCccCCccc------cCCCCCCc
Q 015448           79 K-G----IEGLSKPTVLNVGKNKLRSMDD---------------VTSVVSLRALILNDNEIVSICK------LDQMKELN  132 (406)
Q Consensus        79 ~-~----l~~l~~L~~L~Ls~N~i~~l~~---------------l~~l~~L~~L~Ls~N~i~~l~~------l~~L~~L~  132 (406)
                      | .    +...+.|.+|.|++|.+..+.+               ...-|.|+.++...|++...+.      +..-.+|.
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk  188 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK  188 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence            2 1    4556667777777776655421               1233567777777776655432      11112344


Q ss_pred             EeeCC-----------------CCCCCCCEEEcCCCCCCCch-hHHHHHHhcCCCcccccCcCCC
Q 015448          133 TLGMD-----------------SYFFNLNNLNLQGNPVAEYD-KLAKKVKTLLPNLCIFNARPID  179 (406)
Q Consensus       133 ~L~Ls-----------------~~l~~L~~L~Ls~N~i~~~~-~~~~~~~~~lp~L~~Ld~~~~~  179 (406)
                      ++-+.                 ..+.+|..|+|..|-++-.. .+....+...+.|+.|..+.|-
T Consensus       189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl  253 (388)
T COG5238         189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL  253 (388)
T ss_pred             eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence            44333                 34567778888888776553 2333344556666766666554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.64  E-value=3.3e-05  Score=83.80  Aligned_cols=105  Identities=26%  Similarity=0.340  Sum_probs=86.9

Q ss_pred             CCCCccEEEeeCCCCCCC--C-CCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCC---CCCCCCCCcEE
Q 015448           17 DPNSIKSLSLTHKALSDV--S-CLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK---GIEGLSKPTVL   90 (406)
Q Consensus        17 ~~~~L~~L~Ls~n~l~~i--~-~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~---~l~~l~~L~~L   90 (406)
                      .+|+|++|.+++-.+..-  . .+.+||+|..||+|+.+++.+.+++.|.+|+.|.+.+=.+..-.   .+..|.+|++|
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL  225 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL  225 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence            489999999999887654  2 56799999999999999999999999999999999887777543   58899999999


Q ss_pred             EcCCCCCCCCc--------CCCCCCCCCEEEccCCccCC
Q 015448           91 NVGKNKLRSMD--------DVTSVVSLRALILNDNEIVS  121 (406)
Q Consensus        91 ~Ls~N~i~~l~--------~l~~l~~L~~L~Ls~N~i~~  121 (406)
                      |+|.......+        --..+|.|+.||.|++.+..
T Consensus       226 DIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  226 DISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             eccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            99988765532        12358999999999886643

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.49  E-value=0.00045  Score=70.21  Aligned_cols=72  Identities=18%  Similarity=0.245  Sum_probs=44.4

Q ss_pred             CCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCC-CCCCCCCCCCCCCCcEEEecCC-CCCCCCCCCCCCCCcEEEcCCC
Q 015448           18 PNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSN-NLTSLEGLKHCVNLKWLSLVQN-KLQSLKGIEGLSKPTVLNVGKN   95 (406)
Q Consensus        18 ~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N-~l~~l~~l~~L~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N   95 (406)
                      +.+++.|++++|.|+.+|.+  -.+|+.|.++++ .++.+|..- ..+|+.|.|++| .+..+|     ..|+.|+++.|
T Consensus        51 ~~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP-----~sLe~L~L~~n  122 (426)
T PRK15386         51 ARASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLP-----ESVRSLEIKGS  122 (426)
T ss_pred             hcCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCchh-hhhhhheEccCcccccccc-----cccceEEeCCC
Confidence            36677888888877777632  236888888763 455555411 357788888777 555544     23555556555


Q ss_pred             CC
Q 015448           96 KL   97 (406)
Q Consensus        96 ~i   97 (406)
                      .+
T Consensus       123 ~~  124 (426)
T PRK15386        123 AT  124 (426)
T ss_pred             CC
Confidence            43

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.46  E-value=9.1e-05  Score=70.57  Aligned_cols=121  Identities=23%  Similarity=0.263  Sum_probs=58.8

Q ss_pred             CCCCCCCCcEEEccCCCCCCC-C-----CCCCCCCCcEEEecCCCCCCCCC---------------CCCCCCCcEEEcCC
Q 015448           36 CLTDFNNLERLDLSSNNLTSL-E-----GLKHCVNLKWLSLVQNKLQSLKG---------------IEGLSKPTVLNVGK   94 (406)
Q Consensus        36 ~l~~l~~L~~L~Ls~N~l~~l-~-----~l~~L~~L~~L~Ls~N~l~~l~~---------------l~~l~~L~~L~Ls~   94 (406)
                      .+..||+|+..+||.|.|..- +     .++.-..|.+|.|++|.+..+.+               ...-|.|++.....
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            344556666666666655432 1     14445556666666665554331               12234555555555


Q ss_pred             CCCCCCc------CCCCCCCCCEEEccCCccCCc--c-----ccCCCCCCcEeeCC----------------CCCCCCCE
Q 015448           95 NKLRSMD------DVTSVVSLRALILNDNEIVSI--C-----KLDQMKELNTLGMD----------------SYFFNLNN  145 (406)
Q Consensus        95 N~i~~l~------~l~~l~~L~~L~Ls~N~i~~l--~-----~l~~L~~L~~L~Ls----------------~~l~~L~~  145 (406)
                      |++...+      .+..-..|..+.+..|.|..-  .     .+..+.+|..|+|.                ...+.|+.
T Consensus       167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE  246 (388)
T COG5238         167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE  246 (388)
T ss_pred             chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence            5554432      122223455555555544321  1     13344455555554                34455666


Q ss_pred             EEcCCCCCCCc
Q 015448          146 LNLQGNPVAEY  156 (406)
Q Consensus       146 L~Ls~N~i~~~  156 (406)
                      |.+..|.++.-
T Consensus       247 L~lnDClls~~  257 (388)
T COG5238         247 LRLNDCLLSNE  257 (388)
T ss_pred             ccccchhhccc
Confidence            66666666544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.44  E-value=1.9e-06  Score=82.72  Aligned_cols=160  Identities=17%  Similarity=0.113  Sum_probs=83.5

Q ss_pred             CccEEEeeCCCCCCCC---CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCC-CCCCC---CCCCCCCCcEE
Q 015448           20 SIKSLSLTHKALSDVS---CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNK-LQSLK---GIEGLSKPTVL   90 (406)
Q Consensus        20 ~L~~L~Ls~n~l~~i~---~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~-l~~l~---~l~~l~~L~~L   90 (406)
                      .|+.|+|++..|+.-.   .++.|..|+.|.|.++.+.+--  .+....+|+.|+|+.+. |+.-.   -+.+|..|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            4777777777665432   4556666666777666665531  25555666666666542 33222   14556666666


Q ss_pred             EcCCCCCCCC--c-CCCC-CCCCCEEEccCCc----cCCccc-cCCCCCCcEeeCC-------------CCCCCCCEEEc
Q 015448           91 NVGKNKLRSM--D-DVTS-VVSLRALILNDNE----IVSICK-LDQMKELNTLGMD-------------SYFFNLNNLNL  148 (406)
Q Consensus        91 ~Ls~N~i~~l--~-~l~~-l~~L~~L~Ls~N~----i~~l~~-l~~L~~L~~L~Ls-------------~~l~~L~~L~L  148 (406)
                      +|+.|.+..-  . .+.+ -++|..|+|+++.    ++.+.. ...+++|..|||+             -.++.|++|.|
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            6666655431  1 1122 1355556665542    111211 3345555555555             35556666666


Q ss_pred             CCCCCCCchhHHHHHHhcCCCcccccCcCCChh
Q 015448          149 QGNPVAEYDKLAKKVKTLLPNLCIFNARPIDRI  181 (406)
Q Consensus       149 s~N~i~~~~~~~~~~~~~lp~L~~Ld~~~~~~~  181 (406)
                      +.|-.-.  +.....+...|.|.+||...+...
T Consensus       346 sRCY~i~--p~~~~~l~s~psl~yLdv~g~vsd  376 (419)
T KOG2120|consen  346 SRCYDII--PETLLELNSKPSLVYLDVFGCVSD  376 (419)
T ss_pred             hhhcCCC--hHHeeeeccCcceEEEEeccccCc
Confidence            6553222  211123456677777776655444

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.39  E-value=1.2e-05  Score=77.35  Aligned_cols=151  Identities=23%  Similarity=0.209  Sum_probs=101.1

Q ss_pred             CCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCC-CCCCC---CCCCCCCCcEEEecCCCCCCC--C-CCC-CCCCC
Q 015448           18 PNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNN-LTSLE---GLKHCVNLKWLSLVQNKLQSL--K-GIE-GLSKP   87 (406)
Q Consensus        18 ~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~-l~~l~---~l~~L~~L~~L~Ls~N~l~~l--~-~l~-~l~~L   87 (406)
                      +..|+.|.|.++.+.+--  .+..-.+|+.|+|+.+. |+...   -+.+|..|..|+|++|.+..-  . .+. --++|
T Consensus       209 C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l  288 (419)
T KOG2120|consen  209 CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETL  288 (419)
T ss_pred             HHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhh
Confidence            567888888888887732  67777889999998764 66543   267888899999999877631  1 111 12467


Q ss_pred             cEEEcCCCC----CCCCcC-CCCCCCCCEEEccCCc-cCC--ccccCCCCCCcEeeCC-------------CCCCCCCEE
Q 015448           88 TVLNVGKNK----LRSMDD-VTSVVSLRALILNDNE-IVS--ICKLDQMKELNTLGMD-------------SYFFNLNNL  146 (406)
Q Consensus        88 ~~L~Ls~N~----i~~l~~-l~~l~~L~~L~Ls~N~-i~~--l~~l~~L~~L~~L~Ls-------------~~l~~L~~L  146 (406)
                      +.|+|+++.    ..++.. ...+++|.+|+|++|. ++.  +..+..++.|++|.|+             ...|.|.+|
T Consensus       289 ~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yL  368 (419)
T KOG2120|consen  289 TQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYL  368 (419)
T ss_pred             hhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEE
Confidence            788888764    122332 3467888888888763 333  1236667778888777             688999999


Q ss_pred             EcCCCCCCCchhHHHHHHhcCCCcc
Q 015448          147 NLQGNPVAEYDKLAKKVKTLLPNLC  171 (406)
Q Consensus       147 ~Ls~N~i~~~~~~~~~~~~~lp~L~  171 (406)
                      ++.|+--.+-   ...+...+|+|.
T Consensus       369 dv~g~vsdt~---mel~~e~~~~lk  390 (419)
T KOG2120|consen  369 DVFGCVSDTT---MELLKEMLSHLK  390 (419)
T ss_pred             EeccccCchH---HHHHHHhCcccc
Confidence            9987633221   223456788876

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.19  E-value=0.00095  Score=67.90  Aligned_cols=108  Identities=22%  Similarity=0.284  Sum_probs=71.7

Q ss_pred             CCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecC-CCCCCCCC-CCCCCCCcEEEcCCC-CCCCCcCCCCCCCCCEEE
Q 015448           37 LTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQ-NKLQSLKG-IEGLSKPTVLNVGKN-KLRSMDDVTSVVSLRALI  113 (406)
Q Consensus        37 l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~-N~l~~l~~-l~~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~  113 (406)
                      +..+.++++|++++|.|+.+|.+  ..+|+.|.+++ +.++.+|+ +  .++|+.|.+++| .+..+|     .+|+.|.
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-----~sLe~L~  118 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-----ESVRSLE  118 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-----cccceEE
Confidence            44578999999999999999843  35799999987 45667774 3  358999999998 566554     3577777


Q ss_pred             ccCCccCCccccCCCCCCcEeeCC-----------CCC-CCCCEEEcCCCCCCC
Q 015448          114 LNDNEIVSICKLDQMKELNTLGMD-----------SYF-FNLNNLNLQGNPVAE  155 (406)
Q Consensus       114 Ls~N~i~~l~~l~~L~~L~~L~Ls-----------~~l-~~L~~L~Ls~N~i~~  155 (406)
                      ++.+.+..+..+.  ++|+.|.+.           ..+ ++|++|++++|....
T Consensus       119 L~~n~~~~L~~LP--ssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~  170 (426)
T PRK15386        119 IKGSATDSIKNVP--NGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII  170 (426)
T ss_pred             eCCCCCcccccCc--chHhheeccccccccccccccccCCcccEEEecCCCccc
Confidence            7776544333211  133333331           011 467777777766543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.75  E-value=0.0043  Score=52.07  Aligned_cols=77  Identities=16%  Similarity=0.368  Sum_probs=27.4

Q ss_pred             CCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCCCCCCCCc--CCCCCCCCC
Q 015448           37 LTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGKNKLRSMD--DVTSVVSLR  110 (406)
Q Consensus        37 l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~  110 (406)
                      |..+.+|+.+.+.. .+..+.  .|.++.+|+.+.+..+ +..++  .+..++.|+.+.+.+ .+..++  .+..+++|+
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~   84 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK   84 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence            33444444444442 333332  2444444555555443 44444  244444455555543 232222  233445555


Q ss_pred             EEEccC
Q 015448          111 ALILND  116 (406)
Q Consensus       111 ~L~Ls~  116 (406)
                      .+.+..
T Consensus        85 ~i~~~~   90 (129)
T PF13306_consen   85 NIDIPS   90 (129)
T ss_dssp             EEEETT
T ss_pred             ccccCc
Confidence            555543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.40  E-value=0.0095  Score=49.90  Aligned_cols=103  Identities=14%  Similarity=0.387  Sum_probs=59.6

Q ss_pred             CCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCCCC--CCCCCCCCc
Q 015448           15 TCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPT   88 (406)
Q Consensus        15 ~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~   88 (406)
                      .....+|+.+.+.. .+..+.  .|..+.+|+.+.+..+ +..++  .|.++.+|+.+.+.+ .+..++  .+..+++|+
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~   84 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK   84 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence            44566888888874 576665  7888889999999875 77665  388888899999975 666666  477789999


Q ss_pred             EEEcCCCCCCCCc--CCCCCCCCCEEEccCCccCCcc
Q 015448           89 VLNVGKNKLRSMD--DVTSVVSLRALILNDNEIVSIC  123 (406)
Q Consensus        89 ~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~  123 (406)
                      .+.+..+ +..++  .+..+ .|+.+.+.. .+..++
T Consensus        85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~  118 (129)
T PF13306_consen   85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIE  118 (129)
T ss_dssp             EEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS--
T ss_pred             ccccCcc-ccEEchhhhcCC-CceEEEECC-CccEEC
Confidence            9999765 65554  35565 788887765 444443

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=96.23  E-value=0.0029  Score=65.67  Aligned_cols=90  Identities=26%  Similarity=0.446  Sum_probs=67.2

Q ss_pred             CCCCCCcEEEcCCCCCCCCcCCC----CCCCCCEEEccCC--ccCCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCC
Q 015448           82 EGLSKPTVLNVGKNKLRSMDDVT----SVVSLRALILNDN--EIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAE  155 (406)
Q Consensus        82 ~~l~~L~~L~Ls~N~i~~l~~l~----~l~~L~~L~Ls~N--~i~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~  155 (406)
                      .+.+.+..++|++|+|..+..+.    ..+.|..|+|++|  .+.....+..+..          ..|++|-|.|||+++
T Consensus       215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~----------l~Leel~l~GNPlc~  284 (585)
T KOG3763|consen  215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG----------LPLEELVLEGNPLCT  284 (585)
T ss_pred             cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC----------CCHHHeeecCCcccc
Confidence            34567888999999998876543    3578999999999  5555444554432          368999999999976


Q ss_pred             c----hhHHHHHHhcCCCcccccCcCCChh
Q 015448          156 Y----DKLAKKVKTLLPNLCIFNARPIDRI  181 (406)
Q Consensus       156 ~----~~~~~~~~~~lp~L~~Ld~~~~~~~  181 (406)
                      -    ..|...+...+|+|..||+..+...
T Consensus       285 tf~~~s~yv~~i~~~FPKL~~LDG~ev~~~  314 (585)
T KOG3763|consen  285 TFSDRSEYVSAIRELFPKLLRLDGVEVQPE  314 (585)
T ss_pred             chhhhHHHHHHHHHhcchheeecCcccCcc
Confidence            4    3344456779999999999877653

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.25  E-value=0.062  Score=29.30  Aligned_cols=14  Identities=50%  Similarity=0.665  Sum_probs=4.9

Q ss_pred             CCcEEEecCCCCCC
Q 015448           64 NLKWLSLVQNKLQS   77 (406)
Q Consensus        64 ~L~~L~Ls~N~l~~   77 (406)
                      +|+.|+|++|+|+.
T Consensus         2 ~L~~L~l~~n~L~~   15 (17)
T PF13504_consen    2 NLRTLDLSNNRLTS   15 (17)
T ss_dssp             T-SEEEETSS--SS
T ss_pred             ccCEEECCCCCCCC
Confidence            34444444444443

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=93.23  E-value=0.014  Score=59.87  Aligned_cols=102  Identities=25%  Similarity=0.230  Sum_probs=50.8

Q ss_pred             CCCccEEEeeCC-CCCC--C-CCCCCCCCCcEEEccCC--CCCCCC-----CCCCCCCCcEEEecCCC-CCCCC--CC-C
Q 015448           18 PNSIKSLSLTHK-ALSD--V-SCLTDFNNLERLDLSSN--NLTSLE-----GLKHCVNLKWLSLVQNK-LQSLK--GI-E   82 (406)
Q Consensus        18 ~~~L~~L~Ls~n-~l~~--i-~~l~~l~~L~~L~Ls~N--~l~~l~-----~l~~L~~L~~L~Ls~N~-l~~l~--~l-~   82 (406)
                      .+.|+.|.+..+ .++.  + +....++.|+.|+++++  .+...+     -...+.+|+.|+++++. +++..  .+ .
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            345555555543 2333  1 23445666666766652  111111     13345666666666665 44322  12 2


Q ss_pred             CCCCCcEEEcCCCC-CCCC--cC-CCCCCCCCEEEccCCcc
Q 015448           83 GLSKPTVLNVGKNK-LRSM--DD-VTSVVSLRALILNDNEI  119 (406)
Q Consensus        83 ~l~~L~~L~Ls~N~-i~~l--~~-l~~l~~L~~L~Ls~N~i  119 (406)
                      .+++|+.|.+.+|. +++.  .. ...+++|++|+|+++..
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            25666666666665 4442  12 23455677777766543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.11  E-value=0.039  Score=32.11  Aligned_cols=15  Identities=40%  Similarity=0.640  Sum_probs=7.1

Q ss_pred             CcEEEecCCCCCCCC
Q 015448           65 LKWLSLVQNKLQSLK   79 (406)
Q Consensus        65 L~~L~Ls~N~l~~l~   79 (406)
                      |++|+|++|+|+.+|
T Consensus         2 L~~Ldls~n~l~~ip   16 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIP   16 (22)
T ss_dssp             ESEEEETSSEESEEG
T ss_pred             ccEEECCCCcCEeCC
Confidence            444444444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.43  E-value=0.005  Score=64.30  Aligned_cols=161  Identities=27%  Similarity=0.282  Sum_probs=88.1

Q ss_pred             ccEEEeeCCCCCCCC------CCCCCCCCcEEEccCCCCCCCC------CCCCC-CCCcEEEecCCCCCCCC------CC
Q 015448           21 IKSLSLTHKALSDVS------CLTDFNNLERLDLSSNNLTSLE------GLKHC-VNLKWLSLVQNKLQSLK------GI   81 (406)
Q Consensus        21 L~~L~Ls~n~l~~i~------~l~~l~~L~~L~Ls~N~l~~l~------~l~~L-~~L~~L~Ls~N~l~~l~------~l   81 (406)
                      +..|.|.+|.+....      .+..+++|..|+|++|.+....      .+... ..|++|++..|.++...      .+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            566777777776542      4566677777777777776431      23333 45666667666666422      24


Q ss_pred             CCCCCCcEEEcCCCCCCCC-----c-CCC----CCCCCCEEEccCCccCCccc------cCCCCC-CcEeeCC-------
Q 015448           82 EGLSKPTVLNVGKNKLRSM-----D-DVT----SVVSLRALILNDNEIVSICK------LDQMKE-LNTLGMD-------  137 (406)
Q Consensus        82 ~~l~~L~~L~Ls~N~i~~l-----~-~l~----~l~~L~~L~Ls~N~i~~l~~------l~~L~~-L~~L~Ls-------  137 (406)
                      .....|+.|+++.|.+...     + .+.    ...++++|.+++|.++....      +...+. +..|++.       
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            4466667777777766431     1 122    35566777777776653211      222232 3334333       


Q ss_pred             ---------CCC-CCCCEEEcCCCCCCCchh-HHHHHHhcCCCccccc--CcCCChh
Q 015448          138 ---------SYF-FNLNNLNLQGNPVAEYDK-LAKKVKTLLPNLCIFN--ARPIDRI  181 (406)
Q Consensus       138 ---------~~l-~~L~~L~Ls~N~i~~~~~-~~~~~~~~lp~L~~Ld--~~~~~~~  181 (406)
                               ..+ ..++.++++.|.|..... ....++..++.++.+.  .+++...
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~  305 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY  305 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence                     223 466788888888876532 1223445566666544  3444433

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.25  E-value=0.0021  Score=60.23  Aligned_cols=83  Identities=14%  Similarity=0.101  Sum_probs=47.5

Q ss_pred             CCCCCCCcEEEecCCCCCCCC-CCCCCCCCcEEEcCCCCCCCCc-CCCCCCCCCEEEccCCccCCccc-cCCCCCCcEee
Q 015448           59 LKHCVNLKWLSLVQNKLQSLK-GIEGLSKPTVLNVGKNKLRSMD-DVTSVVSLRALILNDNEIVSICK-LDQMKELNTLG  135 (406)
Q Consensus        59 l~~L~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~N~i~~l~~-l~~L~~L~~L~  135 (406)
                      +..+...+.||++.|++..+. .+.-++.|..|+++.|.|..+| .+..+..++.+++..|.++..|. +.         
T Consensus        38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~---------  108 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQK---------  108 (326)
T ss_pred             hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCcccc---------
Confidence            334455556666666655554 4555566666666666666655 35555556666666666655552 32         


Q ss_pred             CCCCCCCCCEEEcCCCCC
Q 015448          136 MDSYFFNLNNLNLQGNPV  153 (406)
Q Consensus       136 Ls~~l~~L~~L~Ls~N~i  153 (406)
                         ..++++++++-+|++
T Consensus       109 ---k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen  109 ---KEPHPKKNEQKKTEF  123 (326)
T ss_pred             ---ccCCcchhhhccCcc
Confidence               234566666666664

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.87  E-value=0.0031  Score=59.09  Aligned_cols=90  Identities=21%  Similarity=0.228  Sum_probs=74.5

Q ss_pred             CCCCC--CCCCCCCCcEEEccCCCCCCCC-CCCCCCCCcEEEecCCCCCCCC-CCCCCCCCcEEEcCCCCCCCCc-CCCC
Q 015448           31 LSDVS--CLTDFNNLERLDLSSNNLTSLE-GLKHCVNLKWLSLVQNKLQSLK-GIEGLSKPTVLNVGKNKLRSMD-DVTS  105 (406)
Q Consensus        31 l~~i~--~l~~l~~L~~L~Ls~N~l~~l~-~l~~L~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~i~~l~-~l~~  105 (406)
                      ++.+|  .+..+...+.||++.|++..+. .|+-+..|..|+++.|.|..+| .+..+..+..+++.+|.+...| .+..
T Consensus        30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k  109 (326)
T KOG0473|consen   30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKK  109 (326)
T ss_pred             hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccc
Confidence            34444  5567788899999999988775 4777888899999999999888 7888888889999999998888 6788


Q ss_pred             CCCCCEEEccCCccC
Q 015448          106 VVSLRALILNDNEIV  120 (406)
Q Consensus       106 l~~L~~L~Ls~N~i~  120 (406)
                      ++.++++++-.|.++
T Consensus       110 ~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  110 EPHPKKNEQKKTEFF  124 (326)
T ss_pred             cCCcchhhhccCcch
Confidence            899999999888754

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.85  E-value=0.1  Score=28.44  Aligned_cols=15  Identities=27%  Similarity=0.507  Sum_probs=5.9

Q ss_pred             CCcEEEcCCCCCCCC
Q 015448           86 KPTVLNVGKNKLRSM  100 (406)
Q Consensus        86 ~L~~L~Ls~N~i~~l  100 (406)
                      +|+.|+|++|.|+.+
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            445555555554443

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=88.95  E-value=0.2  Score=29.06  Aligned_cols=15  Identities=40%  Similarity=0.401  Sum_probs=6.8

Q ss_pred             CCEEEccCCccCCcc
Q 015448          109 LRALILNDNEIVSIC  123 (406)
Q Consensus       109 L~~L~Ls~N~i~~l~  123 (406)
                      |++|+|++|.|+.+|
T Consensus         2 L~~Ldls~n~l~~ip   16 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIP   16 (22)
T ss_dssp             ESEEEETSSEESEEG
T ss_pred             ccEEECCCCcCEeCC
Confidence            444444444444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=88.66  E-value=0.16  Score=51.99  Aligned_cols=126  Identities=20%  Similarity=0.159  Sum_probs=71.9

Q ss_pred             CCCCCcEEEccCCC-CCC--C-CCCCCCCCCcEEEecCC--CCCCCC-----CCCCCCCCcEEEcCCCC-CCCC--cCCC
Q 015448           39 DFNNLERLDLSSNN-LTS--L-EGLKHCVNLKWLSLVQN--KLQSLK-----GIEGLSKPTVLNVGKNK-LRSM--DDVT  104 (406)
Q Consensus        39 ~l~~L~~L~Ls~N~-l~~--l-~~l~~L~~L~~L~Ls~N--~l~~l~-----~l~~l~~L~~L~Ls~N~-i~~l--~~l~  104 (406)
                      .+++|+.|.+..+. ++.  + +....+++|+.|+++++  .+...+     -...+++|+.|+++.+. +++.  ..+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            46777777777663 443  2 23556778888888763  122111     13455777888887777 5543  2222


Q ss_pred             -CCCCCCEEEccCCc-cCCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCccccc
Q 015448          105 -SVVSLRALILNDNE-IVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFN  174 (406)
Q Consensus       105 -~l~~L~~L~Ls~N~-i~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld  174 (406)
                       .+++|+.|.+.++. +++..- ..+.        ..+++|++|+|+++.......+... ...+++|+.|.
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl-~~i~--------~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~  327 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGL-VSIA--------ERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELK  327 (482)
T ss_pred             hhCCCcceEccCCCCccchhHH-HHHH--------HhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhh
Confidence             36678877766665 443221 1110        3566788888887766544434333 44577766544

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=88.22  E-value=0.0093  Score=62.28  Aligned_cols=141  Identities=28%  Similarity=0.303  Sum_probs=87.9

Q ss_pred             CCCCccEEEeeCCCCCCCC------CCCCC-CCCcEEEccCCCCCCCC------CCCCCCCCcEEEecCCCCCC-----C
Q 015448           17 DPNSIKSLSLTHKALSDVS------CLTDF-NNLERLDLSSNNLTSLE------GLKHCVNLKWLSLVQNKLQS-----L   78 (406)
Q Consensus        17 ~~~~L~~L~Ls~n~l~~i~------~l~~l-~~L~~L~Ls~N~l~~l~------~l~~L~~L~~L~Ls~N~l~~-----l   78 (406)
                      ...+|..|++++|++.+..      .+... ..|++|.+..|.++...      .+.....|+.|+++.|.+..     +
T Consensus       113 t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l  192 (478)
T KOG4308|consen  113 TLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVL  192 (478)
T ss_pred             ccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHH
Confidence            3567777888888887542      33333 45677777777777652      25557777777777777642     1


Q ss_pred             C-CCC----CCCCCcEEEcCCCCCCCCc------CCCCCCC-CCEEEccCCccCCc------cccCCC-CCCcEeeCC--
Q 015448           79 K-GIE----GLSKPTVLNVGKNKLRSMD------DVTSVVS-LRALILNDNEIVSI------CKLDQM-KELNTLGMD--  137 (406)
Q Consensus        79 ~-~l~----~l~~L~~L~Ls~N~i~~l~------~l~~l~~-L~~L~Ls~N~i~~l------~~l~~L-~~L~~L~Ls--  137 (406)
                      + .+.    ...++++|.|++|.++...      .+...++ +..|++..|.+.+.      +.+..+ ..++.+++.  
T Consensus       193 ~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~n  272 (478)
T KOG4308|consen  193 SQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRN  272 (478)
T ss_pred             hhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcC
Confidence            1 222    3566777777777776521      2344444 55577777766543      113333 445555555  


Q ss_pred             --------------CCCCCCCEEEcCCCCCCCch
Q 015448          138 --------------SYFFNLNNLNLQGNPVAEYD  157 (406)
Q Consensus       138 --------------~~l~~L~~L~Ls~N~i~~~~  157 (406)
                                    ..++.++.|.++.|++....
T Consensus       273 si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~  306 (478)
T KOG4308|consen  273 SITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYG  306 (478)
T ss_pred             CccccchHHHHHHHhhhHHHHHhhcccCccccHH
Confidence                          46678999999999998764

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=87.23  E-value=0.42  Score=48.55  Aligned_cols=147  Identities=18%  Similarity=0.163  Sum_probs=85.8

Q ss_pred             CCCCCCcEEEccCCCC-CCCC--C-CCCCCCCcEEEecCCC-CCCCC--C-CCCCCCCcEEEcCCCCCCC---CcC-CCC
Q 015448           38 TDFNNLERLDLSSNNL-TSLE--G-LKHCVNLKWLSLVQNK-LQSLK--G-IEGLSKPTVLNVGKNKLRS---MDD-VTS  105 (406)
Q Consensus        38 ~~l~~L~~L~Ls~N~l-~~l~--~-l~~L~~L~~L~Ls~N~-l~~l~--~-l~~l~~L~~L~Ls~N~i~~---l~~-l~~  105 (406)
                      ..+..|++|+.+++.- ++.+  . -.++++|++|-|+.++ ++...  . -.+++.|+.|++..+....   +.. -.+
T Consensus       291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~  370 (483)
T KOG4341|consen  291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN  370 (483)
T ss_pred             hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence            3566777777766543 3221  1 3456778888887775 22222  1 2355677777777776433   222 245


Q ss_pred             CCCCCEEEccCCccCCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCcCCChhhhhh
Q 015448          106 VVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPIDRITKNE  185 (406)
Q Consensus       106 l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~~~~~~~~~~  185 (406)
                      ++.|+.|.|+++....-.++..+.+-.     ..+..|..|.|++++......+.  .+..+++|+.++.-++....+..
T Consensus       371 C~~lr~lslshce~itD~gi~~l~~~~-----c~~~~l~~lEL~n~p~i~d~~Le--~l~~c~~Leri~l~~~q~vtk~~  443 (483)
T KOG4341|consen  371 CPRLRVLSLSHCELITDEGIRHLSSSS-----CSLEGLEVLELDNCPLITDATLE--HLSICRNLERIELIDCQDVTKEA  443 (483)
T ss_pred             CchhccCChhhhhhhhhhhhhhhhhcc-----ccccccceeeecCCCCchHHHHH--HHhhCcccceeeeechhhhhhhh
Confidence            677888888877532211111111100     35567888888888887665533  46678888887777776666665


Q ss_pred             hhhhhc
Q 015448          186 KDNIVD  191 (406)
Q Consensus       186 ~~~~l~  191 (406)
                      ......
T Consensus       444 i~~~~~  449 (483)
T KOG4341|consen  444 ISRFAT  449 (483)
T ss_pred             hHHHHh
Confidence            554443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=86.76  E-value=0.56  Score=28.05  Aligned_cols=17  Identities=47%  Similarity=0.544  Sum_probs=8.3

Q ss_pred             CCCcEEEecCCCCCCCC
Q 015448           63 VNLKWLSLVQNKLQSLK   79 (406)
Q Consensus        63 ~~L~~L~Ls~N~l~~l~   79 (406)
                      ++|++|+|++|.|+.+|
T Consensus         2 ~~L~~L~L~~N~l~~lp   18 (26)
T smart00370        2 PNLRELDLSNNQLSSLP   18 (26)
T ss_pred             CCCCEEECCCCcCCcCC
Confidence            34455555555555444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=86.76  E-value=0.56  Score=28.05  Aligned_cols=17  Identities=47%  Similarity=0.544  Sum_probs=8.3

Q ss_pred             CCCcEEEecCCCCCCCC
Q 015448           63 VNLKWLSLVQNKLQSLK   79 (406)
Q Consensus        63 ~~L~~L~Ls~N~l~~l~   79 (406)
                      ++|++|+|++|.|+.+|
T Consensus         2 ~~L~~L~L~~N~l~~lp   18 (26)
T smart00369        2 PNLRELDLSNNQLSSLP   18 (26)
T ss_pred             CCCCEEECCCCcCCcCC
Confidence            34455555555555444

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.89  E-value=0.3  Score=45.06  Aligned_cols=85  Identities=19%  Similarity=0.296  Sum_probs=44.8

Q ss_pred             CCcEEEcCCCCCCC--CcCCCCCCCCCEEEccCCcc-CCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhHHHH
Q 015448           86 KPTVLNVGKNKLRS--MDDVTSVVSLRALILNDNEI-VSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKK  162 (406)
Q Consensus        86 ~L~~L~Ls~N~i~~--l~~l~~l~~L~~L~Ls~N~i-~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~~~~  162 (406)
                      .++.++.++..|..  +..+..++.|+.|.+.+|.- .+++ +..+.        ...++|+.|+|++|+-.+...+.  
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~-L~~l~--------~~~~~L~~L~lsgC~rIT~~GL~--  170 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWC-LERLG--------GLAPSLQDLDLSGCPRITDGGLA--  170 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHH-HHHhc--------ccccchheeeccCCCeechhHHH--
Confidence            45666666666654  33455666666666666532 2211 11111        13457777777777543333322  


Q ss_pred             HHhcCCCcccccCcCCChh
Q 015448          163 VKTLLPNLCIFNARPIDRI  181 (406)
Q Consensus       163 ~~~~lp~L~~Ld~~~~~~~  181 (406)
                      .+..+++|+.|....++..
T Consensus       171 ~L~~lknLr~L~l~~l~~v  189 (221)
T KOG3864|consen  171 CLLKLKNLRRLHLYDLPYV  189 (221)
T ss_pred             HHHHhhhhHHHHhcCchhh
Confidence            4556677776665554433

>smart00370 LRR Leucine-rich repeats, outliers

Probab=85.57  E-value=0.76  Score=27.46  Aligned_cols=17  Identities=24%  Similarity=0.382  Sum_probs=9.5

Q ss_pred             CCCcEEEcCCCCCCCCc
Q 015448           85 SKPTVLNVGKNKLRSMD  101 (406)
Q Consensus        85 ~~L~~L~Ls~N~i~~l~  101 (406)
                      ++|++|+|++|.|..+|
T Consensus         2 ~~L~~L~L~~N~l~~lp   18 (26)
T smart00370        2 PNLRELDLSNNQLSSLP   18 (26)
T ss_pred             CCCCEEECCCCcCCcCC
Confidence            45555555555555554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=85.57  E-value=0.76  Score=27.46  Aligned_cols=17  Identities=24%  Similarity=0.382  Sum_probs=9.5

Q ss_pred             CCCcEEEcCCCCCCCCc
Q 015448           85 SKPTVLNVGKNKLRSMD  101 (406)
Q Consensus        85 ~~L~~L~Ls~N~i~~l~  101 (406)
                      ++|++|+|++|.|..+|
T Consensus         2 ~~L~~L~L~~N~l~~lp   18 (26)
T smart00369        2 PNLRELDLSNNQLSSLP   18 (26)
T ss_pred             CCCCEEECCCCcCCcCC
Confidence            45555555555555554

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=83.51  E-value=0.45  Score=48.35  Aligned_cols=148  Identities=21%  Similarity=0.322  Sum_probs=96.9

Q ss_pred             CCCCccEEEeeCCC-CCCCC--CC-CCCCCCcEEEccCCC-CCCCC--CC-CCCCCCcEEEecCCCCCC---CCC-CCCC
Q 015448           17 DPNSIKSLSLTHKA-LSDVS--CL-TDFNNLERLDLSSNN-LTSLE--GL-KHCVNLKWLSLVQNKLQS---LKG-IEGL   84 (406)
Q Consensus        17 ~~~~L~~L~Ls~n~-l~~i~--~l-~~l~~L~~L~Ls~N~-l~~l~--~l-~~L~~L~~L~Ls~N~l~~---l~~-l~~l   84 (406)
                      .+..|+.|..+++. +++..  .| .++++|++|-|+.++ |+...  .+ .+++.|+.+++..+....   +-. -.++
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C  371 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC  371 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence            36678888887754 34433  23 478999999999986 54432  22 467899999998886552   222 3568


Q ss_pred             CCCcEEEcCCCCC-CCC-----c-CCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCch
Q 015448           85 SKPTVLNVGKNKL-RSM-----D-DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYD  157 (406)
Q Consensus        85 ~~L~~L~Ls~N~i-~~l-----~-~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~  157 (406)
                      +.|+.|.|++|.+ ++.     . .-..+..|..|-|++++...-..+..+         ..+++|+.+.|-+++-..-.
T Consensus       372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l---------~~c~~Leri~l~~~q~vtk~  442 (483)
T KOG4341|consen  372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHL---------SICRNLERIELIDCQDVTKE  442 (483)
T ss_pred             chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHH---------hhCcccceeeeechhhhhhh
Confidence            8999999999864 332     1 124567889999999876543333333         25667888887776544333


Q ss_pred             hHHHHHHhcCCCccccc
Q 015448          158 KLAKKVKTLLPNLCIFN  174 (406)
Q Consensus       158 ~~~~~~~~~lp~L~~Ld  174 (406)
                      +.. .+...+|++.+.-
T Consensus       443 ~i~-~~~~~lp~i~v~a  458 (483)
T KOG4341|consen  443 AIS-RFATHLPNIKVHA  458 (483)
T ss_pred             hhH-HHHhhCccceehh
Confidence            322 2457888888653

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=82.58  E-value=1.2  Score=27.22  Aligned_cols=16  Identities=56%  Similarity=0.852  Sum_probs=7.5

Q ss_pred             CCcEEEccCCCCCCCC
Q 015448           42 NLERLDLSSNNLTSLE   57 (406)
Q Consensus        42 ~L~~L~Ls~N~l~~l~   57 (406)
                      +|+.|+|++|.|+.++
T Consensus         3 ~L~~L~L~~NkI~~IE   18 (26)
T smart00365        3 NLEELDLSQNKIKKIE   18 (26)
T ss_pred             ccCEEECCCCccceec
Confidence            4444444444444443

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=82.00  E-value=1.1  Score=27.23  Aligned_cols=17  Identities=41%  Similarity=0.595  Sum_probs=8.1

Q ss_pred             CCCcEEEecCCCCCCCC
Q 015448           63 VNLKWLSLVQNKLQSLK   79 (406)
Q Consensus        63 ~~L~~L~Ls~N~l~~l~   79 (406)
                      .+|+.|+|++|.|+.+.
T Consensus         2 ~~L~~L~L~~NkI~~IE   18 (26)
T smart00365        2 TNLEELDLSQNKIKKIE   18 (26)
T ss_pred             CccCEEECCCCccceec
Confidence            34455555555554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	406
4fho_A	231	Crystal Structure Of An Internalin C2 (Inlc2) From		1e-08
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		4e-08
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		5e-08
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		6e-08
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		6e-08
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		7e-08
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		7e-08
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		7e-08
1h6u_A	308	Internalin H: Crystal Structure Of Fused N-Terminal		4e-07
1xeu_A	263	Crystal Structure Of Internalin C From Listeria Mon		7e-06
4fmz_A	347	Crystal Structure Of An Internalin (Inlf) From List		1e-05
4aw4_A	311	Engineered Variant Of Listeria Monocytogenes Inlb I		4e-05
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		6e-04
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		7e-04

>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From Listeria Monocytogenes Str. 4b F2365 At 1.90 A Resolution Length = 231

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 61/112 (54%)
Query: 20  SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK 79
           SIK+L LT   ++DV+ L   +NL+ L L  N +T++  L    NL++LS+  N++  L 
Sbjct: 114 SIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNNQVNDLT 173
Query: 80  GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKEL 131
            +  LSK T L    NK+  +  + S+ +L  + L DN+I  +  L  +  L
Sbjct: 174 PLANLSKLTTLRADDNKISDISPLASLPNLIEVHLKDNQISDVSPLANLSNL 225

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
Query: 21  IKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG 80
           ++SL  T+  +SD++ L    NL+ L L+ N L  +  L    NL  L L  N++ +L  
Sbjct: 200 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 259
Query: 81  IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYF 140
           + GL+K T L +G N++ ++  +  + +L  L LN+N++  I  +  +K L  L +  YF
Sbjct: 260 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL--YF 317

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
Query: 21  IKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG 80
           ++SL  T+  +SD++ L    NL+ L L+ N L  +  L    NL  L L  N++ +L  
Sbjct: 201 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 260
Query: 81  IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYF 140
           + GL+K T L +G N++ ++  +  + +L  L LN+N++  I  +  +K L  L +  YF
Sbjct: 261 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL--YF 318

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
Query: 21  IKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG 80
           ++SL  T+  +SD++ L    NL+ L L+ N L  +  L    NL  L L  N++ +L  
Sbjct: 196 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 255
Query: 81  IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYF 140
           + GL+K T L +G N++ ++  +  + +L  L LN+N++  I  +  +K L  L +  YF
Sbjct: 256 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL--YF 313

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
Query: 21  IKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG 80
           ++SL  T+  +SD++ L    NL+ L L+ N L  +  L    NL  L L  N++ +L  
Sbjct: 196 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 255
Query: 81  IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYF 140
           + GL+K T L +G N++ ++  +  + +L  L LN+N++  I  +  +K L  L +  YF
Sbjct: 256 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL--YF 313

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
Query: 21  IKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG 80
           ++SL  T+  +SD++ L    NL+ L L+ N L  +  L    NL  L L  N++ +L  
Sbjct: 197 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 256
Query: 81  IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYF 140
           + GL+K T L +G N++ ++  +  + +L  L LN+N++  I  +  +K L  L +  YF
Sbjct: 257 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL--YF 314

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
Query: 21  IKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG 80
           ++SL  T+  +SD++ L    NL+ L L+ N L  +  L    NL  L L  N++ +L  
Sbjct: 197 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 256
Query: 81  IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYF 140
           + GL+K T L +G N++ ++  +  + +L  L LN+N++  I  +  +K L  L +  YF
Sbjct: 257 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL--YF 314

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
Query: 21  IKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG 80
           ++SL  T+  +SD++ L    NL+ L L+ N L  +  L    NL  L L  N++ +L  
Sbjct: 197 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 256
Query: 81  IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYF 140
           + GL+K T L +G N++ ++  +  + +L  L LN+N++  I  +  +K L  L +  YF
Sbjct: 257 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL--YF 314

>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal Domains Length = 308

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 59/112 (52%)
Query: 20  SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK 79
           SIK+L LT   ++DV+ L   +NL+ L L  N +T++  L    NL++LS+   ++  L 
Sbjct: 108 SIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT 167
Query: 80  GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKEL 131
            +  LSK T L    NK+  +  + S+ +L  + L +N+I  +  L     L
Sbjct: 168 PLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNL 219

>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria Monocytogenes Length = 263

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Query: 21  IKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG 80
           +K L L+H  +SD+S L D   LE L ++ N L +L G+     L  L L  N+L+    
Sbjct: 65  LKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSAC-LSRLFLDNNELRDTDS 123
Query: 81  IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGM 136
           +  L    +L++  NKL+S+  +  +  L  L L+ NEI +   L ++K++N + +
Sbjct: 124 LIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDL 179

>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria Monocytogenes Str. 4b F2365 At 1.91 A Resolution Length = 347

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 59/117 (50%)
Query: 21  IKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG 80
           + SLSL +  + D+S L    +L       N +T +  + +   L  L +  NK+  L  
Sbjct: 179 LYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNNKITDLSP 238
Query: 81  IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD 137
           +  LS+ T L +G N++  ++ V  +  L+ L +  N+I  I  L+ + +LN+L ++
Sbjct: 239 LANLSQLTWLEIGTNQISDINAVKDLTKLKXLNVGSNQISDISVLNNLSQLNSLFLN 295

>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb Internalin Domain With An Additional Leucine Rich Repeat Inserted Length = 311

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 71/120 (59%), Gaps = 1/120 (0%)
Query: 18  PNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQS 77
           PN + SL+L++  ++D+S +    N+ +L L+ N LT ++ L +  NL WL L +NK++ 
Sbjct: 66  PN-LTSLNLSNNQITDISPIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD 124
Query: 78  LKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD 137
           L  ++ L K   L++  N +  ++ +  +  L +L L +N+I  I  L ++ +L+TL ++
Sbjct: 125 LSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLE 184

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 80/134 (59%), Gaps = 7/134 (5%)
Query: 7   QQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLK 66
           +QI  D+   +  +IK+ +L  K+++D     + N+++++  +++++ S++G+++  N++
Sbjct: 10  KQIFPDDAFAE--TIKA-NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVR 66
Query: 67  WLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDNEIVSICK 124
           +L+L  NKL  +  ++ L+  T L +  N+L+S+ +     + +L+ L+L +N++ S+  
Sbjct: 67  YLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD 126
Query: 125 --LDQMKELNTLGM 136
              D++  L  L +
Sbjct: 127 GVFDKLTNLTYLNL 140

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 87/158 (55%), Gaps = 14/158 (8%)
Query: 7   QQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLK 66
           +QI  D+   +  +IK+ +L  K+++D     + N+++++  +++++ S++G+++  N++
Sbjct: 10  KQIFPDDAFAE--TIKA-NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVR 66
Query: 67  WLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDNEIVSICK 124
           +L+L  NKL  +  ++ L+  T L +  N+L+S+ +     + +L+ L+L +N++ S+  
Sbjct: 67  YLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD 126
Query: 125 --LDQMKELNTLGMDSYFFXXXXXXXQGNPVAEYDKLA 160
              D++  L  L    Y +       Q  P   +DKL 
Sbjct: 127 GVFDKLTNLTYL----YLY---HNQLQSLPKGVFDKLT 157

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	406
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-23
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-22
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-22
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-21
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-22
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-22
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-17
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-07
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	1e-07
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	3e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	8e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	5e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-04

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 97.8 bits (244), Expect = 3e-23
 Identities = 38/183 (20%), Positives = 82/183 (44%), Gaps = 21/183 (11%)

Query: 4   LSTQQILKDNK----TCDPN--SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLE 57
           L ++ I           D         +L  K+++D     + N+++++  +++++ S++
Sbjct: 3   LGSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ 62

Query: 58  GLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDN 117
           G+++  N+  L L  NKL  +K +  L     L + +NK++ +  +  +  L++L L  N
Sbjct: 63  GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHN 122

Query: 118 EIVSICKLDQMKELNTLGMD----------SYFFNLNNLNLQGNPVAEYDKLAKKVKTLL 167
            I  I  L  + +L +L +           S    L+ L+L+ N +++   LA      L
Sbjct: 123 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAG-----L 177

Query: 168 PNL 170
             L
Sbjct: 178 TKL 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 92.8 bits (231), Expect = 2e-22
 Identities = 39/172 (22%), Positives = 81/172 (47%), Gaps = 18/172 (10%)

Query: 23  SLSLTHKALSDV-SCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGI 81
            L      +  + + L+     + L LS+NN+  +  L    NL+ LSL +N ++ ++ +
Sbjct: 29  ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENL 88

Query: 82  EGLSKP-TVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYF 140
           + ++     L +  N++ S+  +  +V+LR L +++N+I +  ++D++  L+        
Sbjct: 89  DAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALD-------- 140

Query: 141 FNLNNLNLQGNPVAEYDKLA-------KKVKTLLPNLCIFNARPIDRITKNE 185
             L +L L GNP+    K          +V   LPNL   +  P+D   + +
Sbjct: 141 -KLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQ 191

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 94.8 bits (236), Expect = 4e-22
 Identities = 34/161 (21%), Positives = 69/161 (42%), Gaps = 15/161 (9%)

Query: 20  SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK 79
           +   ++     ++D     D + +  L      +T++EG+++  NL  L L  N++  L 
Sbjct: 20  NAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA 79

Query: 80  GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD-- 137
            ++ L+K T L +  N L+++  +  + S++ L L   +I  +  L  +  L  L +D  
Sbjct: 80  PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 139

Query: 138 --------SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNL 170
                   +   NL  L++    V++   LA      L  L
Sbjct: 140 QITNISPLAGLTNLQYLSIGNAQVSDLTPLAN-----LSKL 175

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 92.8 bits (231), Expect = 2e-21
 Identities = 40/177 (22%), Positives = 72/177 (40%), Gaps = 15/177 (8%)

Query: 4   LSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCV 63
                +       D + I +LS     ++ +  +   NNL  L+L  N +T L  LK+  
Sbjct: 26  AGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLT 85

Query: 64  NLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSIC 123
            +  L L  N L+++  I GL     L++   ++  +  +  + +L+ L L+ N+I +I 
Sbjct: 86  KITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNIS 145

Query: 124 KLDQMKELNTLGMD----------SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNL 170
            L  +  L  L +           +    L  L    N +++   LA      LPNL
Sbjct: 146 PLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLAS-----LPNL 197

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 93.6 bits (233), Expect = 4e-22
 Identities = 36/161 (22%), Positives = 76/161 (47%), Gaps = 16/161 (9%)

Query: 20  SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK 79
           +    +L  ++++D+    + + ++  +  ++N+ SL G++   NLK L L  N++  L 
Sbjct: 20  NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLS 79

Query: 80  GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD-- 137
            ++ L+K   L+V +N+L++++ + S   L  L L++NE+     L  +K L  L +   
Sbjct: 80  PLKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNN 138

Query: 138 --------SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNL 170
                    +   L  L+L GN +     L +     L  +
Sbjct: 139 KLKSIVMLGFLSKLEVLDLHGNEITNTGGLTR-----LKKV 174

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 78.1 bits (193), Expect = 1e-16
 Identities = 26/154 (16%), Positives = 61/154 (39%), Gaps = 16/154 (10%)

Query: 31  LSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVL 90
           ++ V       N  + +L   ++T L   K    ++  +   + +QSL G++  +    L
Sbjct: 9   INQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKEL 68

Query: 91  NVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD----------SYF 140
           ++  N++  +  +  +  L  L +N N + ++  +     L+ L +D           + 
Sbjct: 69  HLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSAC-LSRLFLDNNELRDTDSLIHL 127

Query: 141 FNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFN 174
            NL  L+++ N +     L       L  L + +
Sbjct: 128 KNLEILSIRNNKLKSIVMLGF-----LSKLEVLD 156

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 96.7 bits (240), Expect = 7e-22
 Identities = 54/315 (17%), Positives = 115/315 (36%), Gaps = 21/315 (6%)

Query: 4   LSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCV 63
           L  + +       + NSI  +   +  +  V  +    N+ +L L+ N LT ++ L +  
Sbjct: 28  LKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLK 87

Query: 64  NLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSIC 123
           NL WL L +NK++ L  ++ L K   L++  N +  ++ +  +  L +L L +N+I  I 
Sbjct: 88  NLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDIT 147

Query: 124 KLDQMKELNTLGMD----------SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIF 173
            L ++ +L+TL ++          +    L NL L  N +++   LA      L NL + 
Sbjct: 148 VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAG-----LKNLDVL 202

Query: 174 NARPIDRITKNEKDNIVDKVNDSSNNSDDTIKVRMGKKRGGTRETNDKLSNEEIQWSKSD 233
                + + K         V ++  N+D ++              +       ++W   +
Sbjct: 203 ELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP------EIISDDGDYEKPNVKWHLPE 256

Query: 234 SAAGKKLKKKSKEKEGELDAIDDAKNSGGVVPGQNKDANLNGSGDVEMEKDLKRKGRKTS 293
                          G+  A    + +  +        +++G+      +   R      
Sbjct: 257 FTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKP 316

Query: 294 ENLSNKGIQVHDDDK 308
                   +    +K
Sbjct: 317 PTKQGYVFKGWYTEK 331

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 86.7 bits (214), Expect = 1e-18
 Identities = 29/164 (17%), Positives = 67/164 (40%), Gaps = 15/164 (9%)

Query: 21  IKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG 80
           +         +  +     F    + +L   ++T         ++  +    + ++S++G
Sbjct: 1   MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG 60

Query: 81  IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS-- 138
           I+ L   T L +  NKL  +  +T++ +L  L L++N+I  +  L  +K+L +L ++   
Sbjct: 61  IQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNG 120

Query: 139 --------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFN 174
                   +   L +L L  N + +   L++     L  L   +
Sbjct: 121 ISDINGLVHLPQLESLYLGNNKITDITVLSR-----LTKLDTLS 159

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 93.1 bits (232), Expect = 7e-21
 Identities = 38/176 (21%), Positives = 73/176 (41%), Gaps = 14/176 (7%)

Query: 4   LSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCV 63
           L    +       D + + +L      +  +  +   NNL +++ S+N LT +  LK+  
Sbjct: 31  LGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLT 90

Query: 64  NLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSIC 123
            L  + +  N++  +  +  L+  T L +  N++  +D + ++ +L  L L+ N I  I 
Sbjct: 91  KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS 150

Query: 124 KLDQMKELNTLGMD---------SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNL 170
            L  +  L  L            +    L  L++  N V++   LAK     L NL
Sbjct: 151 ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK-----LTNL 201

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 90.0 bits (224), Expect = 9e-20
 Identities = 31/169 (18%), Positives = 65/169 (38%), Gaps = 10/169 (5%)

Query: 20  SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK 79
           ++  L L +  +S+++ L+    L  L L +N ++++  L     L  L L +N+L+ + 
Sbjct: 244 NLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS 303

Query: 80  GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD-- 137
            I  L   T L +  N +  +  V+S+  L+ L   +N++  +  L  +  +N L     
Sbjct: 304 PISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHN 363

Query: 138 --------SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPI 178
                   +    +  L L            K   ++   +       I
Sbjct: 364 QISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI 412

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 86.9 bits (216), Expect = 9e-19
 Identities = 37/144 (25%), Positives = 69/144 (47%), Gaps = 10/144 (6%)

Query: 20  SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK 79
           +++ L ++   +SD+S L    NLE L  ++N ++ +  L    NL  LSL  N+L+ + 
Sbjct: 178 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG 237

Query: 80  GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD-- 137
            +  L+  T L++  N++ ++  ++ +  L  L L  N+I +I  L  +  L  L ++  
Sbjct: 238 TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNEN 297

Query: 138 --------SYFFNLNNLNLQGNPV 153
                   S   NL  L L  N +
Sbjct: 298 QLEDISPISNLKNLTYLTLYFNNI 321

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 86.2 bits (214), Expect = 1e-18
 Identities = 31/158 (19%), Positives = 64/158 (40%), Gaps = 13/158 (8%)

Query: 3   RLSTQQILKDNK----TCDPN--SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSL 56
            L +  I +D        D          L    ++D    TD + +  L      + S+
Sbjct: 2   PLGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI 61

Query: 57  EGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILND 116
           +G+++  NL  ++   N+L  +  ++ L+K   + +  N++  +  + ++ +L  L L +
Sbjct: 62  DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 121

Query: 117 NEIVSICKLDQMKELNTLGMD-------SYFFNLNNLN 147
           N+I  I  L  +  LN L +        S    L +L 
Sbjct: 122 NQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 159

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 85.0 bits (211), Expect = 3e-18
 Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 10/142 (7%)

Query: 20  SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK 79
           +++SL  T+  +SD++ L    NL+ L L+ N L  +  L    NL  L L  N++ +L 
Sbjct: 200 NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA 259

Query: 80  GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD-- 137
            + GL+K T L +G N++ ++  +  + +L  L LN+N++  I  +  +K L  L +   
Sbjct: 260 PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 319

Query: 138 --------SYFFNLNNLNLQGN 151
                   S    L  L    N
Sbjct: 320 NISDISPVSSLTKLQRLFFYNN 341

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 81.5 bits (202), Expect = 4e-17
 Identities = 36/145 (24%), Positives = 71/145 (48%), Gaps = 11/145 (7%)

Query: 19  NSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSL 78
            S++ LS  ++ ++D+  L +   LERLD+SSN ++ +  L    NL+ L    N++  +
Sbjct: 156 TSLQQLSFGNQ-VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDI 214

Query: 79  KGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD- 137
             +  L+    L++  N+L+ +  + S+ +L  L L +N+I ++  L  + +L  L +  
Sbjct: 215 TPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGA 274

Query: 138 ---------SYFFNLNNLNLQGNPV 153
                    +    L NL L  N +
Sbjct: 275 NQISNISPLAGLTALTNLELNENQL 299

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 91.7 bits (227), Expect = 3e-20
 Identities = 34/167 (20%), Positives = 63/167 (37%), Gaps = 32/167 (19%)

Query: 5   STQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLE-GLKHCV 63
           S   +       +   ++ L L HK L+ +  L     +  LDLS N L +L   L    
Sbjct: 427 SKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALR 486

Query: 64  NLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSIC 123
            L+ L    N L+++ G+  L                        L+ L+L +N +    
Sbjct: 487 CLEVLQASDNALENVDGVANLP----------------------RLQELLLCNNRLQQSA 524

Query: 124 KLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNL 170
            +  +              L  LNLQGN + + + + +++  +LP++
Sbjct: 525 AIQPLVSCP---------RLVLLNLQGNSLCQEEGIQERLAEMLPSV 562

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 88.4 bits (220), Expect = 1e-19
 Identities = 31/143 (21%), Positives = 69/143 (48%), Gaps = 11/143 (7%)

Query: 20  SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK 79
                 L   +++DV    +  ++ +L ++   + S++G+++  NL++L+L  N++  + 
Sbjct: 23  EGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDIS 82

Query: 80  GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD-- 137
            +  L K T L +G NK+  +  + ++ +LR L LN++ I  I  L  + ++ +L +   
Sbjct: 83  PLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGAN 142

Query: 138 ---------SYFFNLNNLNLQGN 151
                    S    LN L +  +
Sbjct: 143 HNLSDLSPLSNMTGLNYLTVTES 165

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 86.8 bits (216), Expect = 4e-19
 Identities = 39/167 (23%), Positives = 71/167 (42%), Gaps = 17/167 (10%)

Query: 20  SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK 79
            + SLSL +  + D+S L    +L       N +T +  + +   L  L +  NK+  L 
Sbjct: 178 DLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLS 237

Query: 80  GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD-- 137
            +  LS+ T L +G N++  ++ V  +  L+ L +  N+I  I  L+ + +LN+L ++  
Sbjct: 238 PLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNN 297

Query: 138 -------SYFFNLNNL---NLQGNPVAEYDKLAKKVKTLLPNLCIFN 174
                       L NL    L  N + +   LA      L  +   +
Sbjct: 298 QLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLAS-----LSKMDSAD 339

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 83.4 bits (207), Expect = 6e-18
 Identities = 35/163 (21%), Positives = 71/163 (43%), Gaps = 16/163 (9%)

Query: 19  NSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSL 78
            SI  L +  + ++ +  +    NLE L+L+ N +T +  L + V L  L +  NK+  +
Sbjct: 44  ESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI 103

Query: 79  KGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICK-LDQMKELNTLGMD 137
             ++ L+    L + ++ +  +  + ++  + +L L  N  +S    L  M  LN L + 
Sbjct: 104 SALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVT 163

Query: 138 ----------SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNL 170
                     +   +L +L+L  N + +   LA      L +L
Sbjct: 164 ESKVKDVTPIANLTDLYSLSLNYNQIEDISPLAS-----LTSL 201

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 83.0 bits (206), Expect = 9e-18
 Identities = 28/148 (18%), Positives = 64/148 (43%), Gaps = 10/148 (6%)

Query: 20  SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK 79
            +  L++T   + DV+ + +  +L  L L+ N +  +  L    +L + +   N++  + 
Sbjct: 156 GLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDIT 215

Query: 80  GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD-- 137
            +  +++   L +G NK+  +  + ++  L  L +  N+I  I  +  + +L  L +   
Sbjct: 216 PVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSN 275

Query: 138 --------SYFFNLNNLNLQGNPVAEYD 157
                   +    LN+L L  N +   D
Sbjct: 276 QISDISVLNNLSQLNSLFLNNNQLGNED 303

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 82.2 bits (204), Expect = 1e-17
 Identities = 32/168 (19%), Positives = 68/168 (40%), Gaps = 16/168 (9%)

Query: 20  SIKSLSLTH-KALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSL 78
            + SL+L     LSD+S L++   L  L ++ + +  +  + +  +L  LSL  N+++ +
Sbjct: 133 KMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDI 192

Query: 79  KGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD- 137
             +  L+         N++  +  V ++  L +L + +N+I  +  L  + +L  L +  
Sbjct: 193 SPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGT 252

Query: 138 ---------SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNAR 176
                         L  LN+  N +++   L       L  L      
Sbjct: 253 NQISDINAVKDLTKLKMLNVGSNQISDISVLNN-----LSQLNSLFLN 295

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 81.0 bits (201), Expect = 4e-17
 Identities = 28/140 (20%), Positives = 60/140 (42%), Gaps = 10/140 (7%)

Query: 22  KSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGI 81
            +L+     ++ +    D     R  L   ++T +   +   ++  L +   K+ S++GI
Sbjct: 3   ATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQGI 62

Query: 82  EGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD---- 137
           E L+    LN+  N++  +  ++++V L  L +  N+I  I  L  +  L  L ++    
Sbjct: 63  EYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNI 122

Query: 138 ------SYFFNLNNLNLQGN 151
                 +    + +LNL  N
Sbjct: 123 SDISPLANLTKMYSLNLGAN 142

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 69.5 bits (171), Expect = 3e-13
 Identities = 22/102 (21%), Positives = 48/102 (47%), Gaps = 2/102 (1%)

Query: 20  SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSL- 78
            +  L +    +SD++ + D   L+ L++ SN ++ +  L +   L  L L  N+L +  
Sbjct: 244 QLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNED 303

Query: 79  -KGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEI 119
            + I GL+  T L + +N +  +  + S+  + +    +  I
Sbjct: 304 MEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 55.2 bits (134), Expect = 1e-08
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 2/82 (2%)

Query: 19  NSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSL--EGLKHCVNLKWLSLVQNKLQ 76
             +K L++    +SD+S L + + L  L L++N L +   E +    NL  L L QN + 
Sbjct: 265 TKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324

Query: 77  SLKGIEGLSKPTVLNVGKNKLR 98
            ++ +  LSK    +     ++
Sbjct: 325 DIRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.7 bits (104), Expect = 7e-05
 Identities = 18/116 (15%), Positives = 41/116 (35%), Gaps = 15/116 (12%)

Query: 65  LKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICK 124
              L+ +   +  +     L++     + K  +  +     + S+  L++   ++ SI  
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQG 61

Query: 125 LDQMKELNTLGMD----------SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNL 170
           ++ +  L  L ++          S    L NL +  N + +   L       L NL
Sbjct: 62  IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQN-----LTNL 112

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 80.9 bits (200), Expect = 3e-18
 Identities = 33/186 (17%), Positives = 65/186 (34%), Gaps = 30/186 (16%)

Query: 1   MTRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTD-FNNLERLDLSSNNLTSLEGL 59
           M +L+ + I +  +  +    + L L    +  +  L    +  + +D S N +  L+G 
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query: 60  KHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEI 119
                LK L +  N++  +      + P                     L  LIL +N +
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALP--------------------DLTELILTNNSL 100

Query: 120 VSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPID 179
           V +  LD +  L          +L  L +  NPV         V   +P + + + + + 
Sbjct: 101 VELGDLDPLASLK---------SLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151

Query: 180 RITKNE 185
              + E
Sbjct: 152 LKERQE 157

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 73.8 bits (182), Expect = 1e-15
 Identities = 31/171 (18%), Positives = 73/171 (42%), Gaps = 23/171 (13%)

Query: 17  DPN--SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNK 74
           D    +  +  L   + ++++     N+L  + L++ N+T L G+++  N+K L++    
Sbjct: 19  DSTFKAYLNGLLGQSSTANIT-EAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIH 77

Query: 75  LQSLKGIEGLSKPTVLNVGKNKLRSMD--DVTSVVSLRALILNDNEI--VSICKLDQMKE 130
             +   I GLS    L +    + S    +++ + SL  L ++ +      + K++ + +
Sbjct: 78  ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK 137

Query: 131 LNTLGMD-----------SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNL 170
           +N++ +                 L +LN+Q + V +Y  +        P L
Sbjct: 138 VNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIED-----FPKL 183

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 73.5 bits (181), Expect = 2e-15
 Identities = 27/151 (17%), Positives = 68/151 (45%), Gaps = 15/151 (9%)

Query: 19  NSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQS- 77
           NS+  ++L +  ++D++ +   +N++ L +++ + T+   +    NL+ L ++   + S 
Sbjct: 44  NSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSD 103

Query: 78  -LKGIEGLSKPTVLNVGKNKL--RSMDDVTSVVSLRALILNDN-EIVSICKLDQMKELNT 133
            +  + GL+  T+L++  +      +  + ++  + ++ L+ N  I  I  L  + EL +
Sbjct: 104 KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKS 163

Query: 134 LGMD----------SYFFNLNNLNLQGNPVA 154
           L +             F  LN L      + 
Sbjct: 164 LNIQFDGVHDYRGIEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.0 bits (141), Expect = 4e-10
 Identities = 16/108 (14%), Positives = 39/108 (36%), Gaps = 5/108 (4%)

Query: 20  SIKSLSLTHKALSD--VSCLTDFNNLERLDLSSNNLT--SLEGLKHCVNLKWLSLVQN-K 74
           +++ L +  K ++   +  L+   +L  LD+S +      L  +     +  + L  N  
Sbjct: 89  NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148

Query: 75  LQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSI 122
           +  +  ++ L +   LN+  + +     +     L  L      I   
Sbjct: 149 ITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.0 bits (115), Expect = 8e-07
 Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 20  SIKSLSLTH-KALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSL 78
            + S+ L++  A++D+  L     L+ L++  + +    G++    L  L      +   
Sbjct: 137 KVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGGK 196

Query: 79  K 79
           K
Sbjct: 197 K 197

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 70.9 bits (174), Expect = 6e-15
 Identities = 36/167 (21%), Positives = 61/167 (36%), Gaps = 32/167 (19%)

Query: 7   QQILKDNKTCDPNSIKSLSLTH---KALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCV 63
           ++I  + +   P+ +K L L +             +F  LE L   +  LTS+  L    
Sbjct: 5   RRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLN 64

Query: 64  NLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSIC 123
            LK L L  N++     +     P                    +L  L L+ N+I  + 
Sbjct: 65  KLKKLELSDNRVSGGLEVLAEKCP--------------------NLTHLNLSGNKIKDLS 104

Query: 124 KLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNL 170
            ++ +K+L          NL +L+L    V   +   + V  LLP L
Sbjct: 105 TIEPLKKLE---------NLKSLDLFNCEVTNLNDYRENVFKLLPQL 142

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 73.2 bits (180), Expect = 2e-14
 Identities = 33/149 (22%), Positives = 61/149 (40%), Gaps = 14/149 (9%)

Query: 17  DPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQ 76
            P +++ L  +H +++ V        L  L L  NNLT    L +   L  + L  N+L+
Sbjct: 203 IPIAVEELDASHNSINVVR-GPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELE 261

Query: 77  SLKG--IEGLSKPTVLNVGKNKLRSMDDV-TSVVSLRALILNDNEIVSICK-LDQMKELN 132
            +       + +   L +  N+L +++     + +L+ L L+ N ++ + +   Q   L 
Sbjct: 262 KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLE 321

Query: 133 TLGMD---------SYFFNLNNLNLQGNP 152
            L +D         S    L NL L  N 
Sbjct: 322 NLYLDHNSIVTLKLSTHHTLKNLTLSHND 350

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 28/167 (16%), Positives = 65/167 (38%), Gaps = 19/167 (11%)

Query: 4   LSTQQILKDNKTCDPNSIKSLSLTHKALSDV--SCLTDFNNLERLDLSSNNLTSLEG--L 59
           + TQ +    +    N+ K ++  +  +  +  + L  F  +E L+L+   +  ++    
Sbjct: 30  MQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAF 89

Query: 60  KHCVNLKWLSLVQNKLQSLKG--IEGLSKPTVLNVGKNKLRSMDDVT--SVVSLRALILN 115
            +   ++ L +  N ++ L     + +   TVL + +N L S+      +   L  L ++
Sbjct: 90  AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 149

Query: 116 DNEIVSI-----CKLDQMKELN------TLGMDSYFFNLNNLNLQGN 151
           +N +  I          ++ L       T    S   +L + N+  N
Sbjct: 150 NNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYN 196

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 62.8 bits (153), Expect = 6e-11
 Identities = 30/145 (20%), Positives = 61/145 (42%), Gaps = 18/145 (12%)

Query: 20  SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK 79
           S+++L L+   L+ V  L+   +L   ++S N L++L      + ++ L    N +  ++
Sbjct: 166 SLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLSTLAIP---IAVEELDASHNSINVVR 221

Query: 80  GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGM- 136
           G     + T+L +  N L     + +   L  + L+ NE+  I      +M+ L  L + 
Sbjct: 222 G-PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 280

Query: 137 -------DSYFFNLNNL---NLQGN 151
                  + Y   +  L   +L  N
Sbjct: 281 NNRLVALNLYGQPIPTLKVLDLSHN 305

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 59.7 bits (145), Expect = 6e-10
 Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 17/137 (12%)

Query: 20  SIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG-LKHCVNLKWLSLVQNKLQ 76
            +  + L++  L  +          LERL +S+N L +L    +    LK L L  N L 
Sbjct: 249 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL 308

Query: 77  SL-KGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLG 135
            + +      +   L +  N + ++  +++  +L+ L L+ N+                 
Sbjct: 309 HVERNQPQFDRLENLYLDHNSIVTLK-LSTHHTLKNLTLSHNDWDCNSLR---------- 357

Query: 136 MDSYFFNLNNLNLQGNP 152
             + F N+    +    
Sbjct: 358 --ALFRNVARPAVDDAD 372

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 22/150 (14%), Positives = 52/150 (34%), Gaps = 22/150 (14%)

Query: 23  SLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSL--EGLKHCVNLKWLSLVQNKLQSLKG 80
            + +  + +         NN + +   ++ +  L    L     ++ L+L   +++ +  
Sbjct: 27  HIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT 86

Query: 81  --IEGLSKPTVLNVGKNKLRSMDDVT--SVVSLRALILNDNEIVSI-----CKLDQMKEL 131
                      L +G N +R +      +V  L  L+L  N++ S+         ++  L
Sbjct: 87  YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 146

Query: 132 N-------TLGMDSYFFNLNNL---NLQGN 151
           +        +  D+ F    +L    L  N
Sbjct: 147 SMSNNNLERIEDDT-FQATTSLQNLQLSSN 175

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 69.8 bits (171), Expect = 2e-14
 Identities = 37/176 (21%), Positives = 66/176 (37%), Gaps = 32/176 (18%)

Query: 7   QQILKDNKTCDPNSIKSLSLTHKALSDVS---CLTDFNNLERLDLSSNNLTSLEGLKHCV 63
           ++I  + +   P +++ L L +   +D        +F NLE L L +  L S+  L    
Sbjct: 12  RRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLP 71

Query: 64  NLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSIC 123
            LK L L +N++     +     P                    +L  L L+ N++  I 
Sbjct: 72  KLKKLELSENRIFGGLDMLAEKLP--------------------NLTHLNLSGNKLKDIS 111

Query: 124 KLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPID 179
            L+ +K+L           L +L+L    V   +   + V  LLP L   +    +
Sbjct: 112 TLEPLKKLE---------CLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 71.7 bits (176), Expect = 8e-14
 Identities = 37/160 (23%), Positives = 72/160 (45%), Gaps = 22/160 (13%)

Query: 18  PNSIKSLSLTHKALSDVSC--LTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQN 73
           P   + L L    +  ++      F +LE L+L+ N ++++E     +  NL+ L L  N
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90

Query: 74  KLQSLKG--IEGLSKPTVLNVGKNKLRSMDDVT--SVVSLRALILNDNEIVSICK----- 124
           +L+ +      GLS  T L++ +NK+  + D     + +L++L + DN++V I       
Sbjct: 91  RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150

Query: 125 LDQMKEL----NTL-----GMDSYFFNLNNLNLQGNPVAE 155
           L+ +++L      L        S+   L  L L+   +  
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 59.3 bits (144), Expect = 7e-10
 Identities = 30/141 (21%), Positives = 61/141 (43%), Gaps = 18/141 (12%)

Query: 20  SIKSLSLTHKALSDVSCLTDFN--NLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKL 75
            +K L ++H    D          NL  L ++  NLT++    ++H V L++L+L  N +
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260

Query: 76  QSLKG--IEGLSKPTVLNVGKNKLRSMDDVT--SVVSLRALILNDNEIVSICKLDQMKEL 131
            +++G  +  L +   + +   +L  ++      +  LR L ++ N++ ++       E 
Sbjct: 261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTL-------EE 313

Query: 132 NTLGMDSYFFNLNNLNLQGNP 152
           +         NL  L L  NP
Sbjct: 314 SVF---HSVGNLETLILDSNP 331

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 34/155 (21%), Positives = 58/155 (37%), Gaps = 22/155 (14%)

Query: 19  NSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNK 74
           NS++ L+L    L+ +    L+  + L  L L   N+ ++     K    LK L +    
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211

Query: 75  LQSL--KGIEGLSKPTVLNVGKNKLRSMDDVT--SVVSLRALILNDNEIVSICK--LDQM 128
                          T L++    L ++  +    +V LR L L+ N I +I    L ++
Sbjct: 212 YLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271

Query: 129 KELNTLGMDS---------YFFNLNNL---NLQGN 151
             L  + +            F  LN L   N+ GN
Sbjct: 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 6/85 (7%)

Query: 20  SIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKL 75
            ++ L+L++  +S +    L +   L+ + L    L  +E    +    L+ L++  N+L
Sbjct: 249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308

Query: 76  QSLKG--IEGLSKPTVLNVGKNKLR 98
            +L+      +     L +  N L 
Sbjct: 309 TTLEESVFHSVGNLETLILDSNPLA 333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 71.5 bits (175), Expect = 1e-13
 Identities = 33/149 (22%), Positives = 61/149 (40%), Gaps = 14/149 (9%)

Query: 17  DPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQ 76
            P +++ L  +H +++ V        L  L L  NNLT    L +   L  + L  N+L+
Sbjct: 209 IPIAVEELDASHNSINVVR-GPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELE 267

Query: 77  SL--KGIEGLSKPTVLNVGKNKLRSMDDV-TSVVSLRALILNDNEIVSICK-LDQMKELN 132
            +       + +   L +  N+L +++     + +L+ L L+ N ++ + +   Q   L 
Sbjct: 268 KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLE 327

Query: 133 TLGMD---------SYFFNLNNLNLQGNP 152
            L +D         S    L NL L  N 
Sbjct: 328 NLYLDHNSIVTLKLSTHHTLKNLTLSHND 356

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 61.1 bits (148), Expect = 3e-10
 Identities = 28/167 (16%), Positives = 65/167 (38%), Gaps = 19/167 (11%)

Query: 4   LSTQQILKDNKTCDPNSIKSLSLTHKALSDV--SCLTDFNNLERLDLSSNNLTSLEG--L 59
           + TQ +    +    N+ K ++  +  +  +  + L  F  +E L+L+   +  ++    
Sbjct: 36  MQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAF 95

Query: 60  KHCVNLKWLSLVQNKLQSLKG--IEGLSKPTVLNVGKNKLRSMDDVT--SVVSLRALILN 115
            +   ++ L +  N ++ L     + +   TVL + +N L S+      +   L  L ++
Sbjct: 96  AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 155

Query: 116 DNEIVSI-----CKLDQMKELN------TLGMDSYFFNLNNLNLQGN 151
           +N +  I          ++ L       T    S   +L + N+  N
Sbjct: 156 NNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYN 202

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 59.2 bits (143), Expect = 1e-09
 Identities = 30/145 (20%), Positives = 61/145 (42%), Gaps = 18/145 (12%)

Query: 20  SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK 79
           S+++L L+   L+ V  L+   +L   ++S N L++L      + ++ L    N +  ++
Sbjct: 172 SLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLSTLAIP---IAVEELDASHNSINVVR 227

Query: 80  GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSI--CKLDQMKELNTLGM- 136
           G     + T+L +  N L     + +   L  + L+ NE+  I      +M+ L  L + 
Sbjct: 228 G-PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 286

Query: 137 -------DSYFFNLNNL---NLQGN 151
                  + Y   +  L   +L  N
Sbjct: 287 NNRLVALNLYGQPIPTLKVLDLSHN 311

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 22/150 (14%), Positives = 52/150 (34%), Gaps = 22/150 (14%)

Query: 23  SLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSLKG 80
            + +  + +         NN + +   ++ +  L    L     ++ L+L   +++ +  
Sbjct: 33  HIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT 92

Query: 81  --IEGLSKPTVLNVGKNKLRSMDDVT--SVVSLRALILNDNEIVSI-----CKLDQMKEL 131
                      L +G N +R +      +V  L  L+L  N++ S+         ++  L
Sbjct: 93  YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 152

Query: 132 N-------TLGMDSYFFNLNNL---NLQGN 151
           +        +  D+ F    +L    L  N
Sbjct: 153 SMSNNNLERIEDDT-FQATTSLQNLQLSSN 181

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 71.0 bits (174), Expect = 2e-13
 Identities = 33/146 (22%), Positives = 64/146 (43%), Gaps = 13/146 (8%)

Query: 19  NSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNK 74
           +S++ L L+H  +  ++        +L+ L+L+ N +  +         NL+ L+L  N 
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325

Query: 75  LQSLKGI--EGLSKPTVLNVGKNKLRSMDDVT--SVVSLRALILNDNEIVSICKLDQMKE 130
           L  L      GL K   +++ KN +  + D T   +  L+ L L DN + +I  +  + +
Sbjct: 326 LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPD 385

Query: 131 L----NTLG-MDSYFFNLNNLNLQGN 151
           +    N L  +       N ++L  N
Sbjct: 386 IFLSGNKLVTLPKINLTANLIHLSEN 411

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 37/157 (23%), Positives = 60/157 (38%), Gaps = 24/157 (15%)

Query: 20  SIKSLSLTH---KALSDVSCLTDFNNLERLDLSSNNLTSLEG---LKHCVNLKWLSLVQN 73
           +   + L+    + L  +  L    +L+ L L+ N  +S  G        +L+ L L +N
Sbjct: 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461

Query: 74  KLQSLKG-------IEGLSKPTVLNVGKNKLRSMDDVT--SVVSLRALILNDNEIVSICK 124
            LQ            EGLS   VL +  N L S+       + +LR L LN N +  +  
Sbjct: 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSH 521

Query: 125 LDQMKELNTLGMD---------SYFFNLNNLNLQGNP 152
            D    L  L +            F +L+ L++  N 
Sbjct: 522 NDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNK 558

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 58.3 bits (141), Expect = 2e-09
 Identities = 31/178 (17%), Positives = 72/178 (40%), Gaps = 27/178 (15%)

Query: 19  NSIKSLSLTHKALSDVSC--LTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNK 74
           ++++ L+L++  L ++          +  +DL  N++  ++    K    L+ L L  N 
Sbjct: 314 DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373

Query: 75  LQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICK---LDQMKEL 131
           L ++  I  +     + +  NKL ++  +   ++   + L++N + ++     L ++  L
Sbjct: 374 LTTIHFIPSI---PDIFLSGNKLVTLPKIN--LTANLIHLSENRLENLDILYFLLRVPHL 428

Query: 132 NTLGMDSYFF-------------NLNNLNLQGNP--VAEYDKLAKKVKTLLPNLCIFN 174
             L ++   F             +L  L L  N   +A   +L   V   L +L +  
Sbjct: 429 QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLY 486

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.4 bits (131), Expect = 4e-08
 Identities = 30/168 (17%), Positives = 60/168 (35%), Gaps = 24/168 (14%)

Query: 8   QILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSL-----EGLKHC 62
           +IL  +       I        + S    L   +++       +N+         GL   
Sbjct: 207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLAR- 265

Query: 63  VNLKWLSLVQNKLQSLKG--IEGLSKPTVLNVGKNKLRSMDDVT--SVVSLRALILNDNE 118
            +++ L L    + SL     E L    VLN+  NK+  + D     + +L+ L L+ N 
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325

Query: 119 IVSICK-----LDQMKELN-------TLGMDSYFF--NLNNLNLQGNP 152
           +  +       L ++  ++        +   ++ F   L  L+L+ N 
Sbjct: 326 LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.4 bits (131), Expect = 4e-08
 Identities = 28/170 (16%), Positives = 53/170 (31%), Gaps = 27/170 (15%)

Query: 15  TCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQ 72
           +C  +  +        L+ V      N  ERL LS N + ++          L+ L L  
Sbjct: 1   SCSFDG-RIAFYRFCNLTQV--PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGS 57

Query: 73  NKLQSL---KGIEGLSKPTVLNVGKNKLRSMDDVT--SVVSLRALILNDNEIVSIC---- 123
                    +    L    +L++G +K+  +       +  L  L L    +        
Sbjct: 58  QYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDG 117

Query: 124 ---KLDQMKELN-------TLGMDSYFFNLNNL---NLQGNPVAEYDKLA 160
               L  +  L+       +L +   F  LN+L   +   N +    +  
Sbjct: 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE 167

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 20  SIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQS 77
            ++ L L H  L+ +     +    L  L L+SN LT L       NL+ L + +N+L +
Sbjct: 481 HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLA 540

Query: 78  LKGIEGLSKPTVLNVGKNKL 97
               +     +VL++  NK 
Sbjct: 541 PNP-DVFVSLSVLDITHNKF 559

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 68.5 bits (168), Expect = 4e-13
 Identities = 28/158 (17%), Positives = 50/158 (31%), Gaps = 7/158 (4%)

Query: 20  SIKSLSLTH---KALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQ 76
            ++ L L       ++        + LE L+L  N +  ++G      LK L L  NKL 
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA 204

Query: 77  SL-KGIEGLSKPTVLNVGKNKLRSMDD-VTSVVSLRALILNDNEIVSICKLDQMKELNTL 134
            +    +  +  T +++  NKL  ++  +    +L    L  N        D   +   +
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264

Query: 135 GM--DSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNL 170
                     L   N +   V             LP  
Sbjct: 265 QTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAP 302

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 68.5 bits (168), Expect = 4e-13
 Identities = 31/137 (22%), Positives = 49/137 (35%), Gaps = 20/137 (14%)

Query: 19  NSIKSLSLTHKALSDV--SCLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNK 74
           N  K   +T  +L     S      N++ LDLS N L+ +    L     L+ L+L  N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 75  LQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTL 134
           L     +E LS    L++  N ++ +       S+  L   +N I  +            
Sbjct: 70  LYETLDLESLSTLRTLDLNNNYVQELLVGP---SIETLHAANNNISRV------------ 114

Query: 135 GMDSYFFNLNNLNLQGN 151
              S      N+ L  N
Sbjct: 115 -SCSRGQGKKNIYLANN 130

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 21/149 (14%)

Query: 20  SIKSLSLTHKALSDV--SCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQS 77
           ++K L L+   LS +  + L  F  LE L+LSSN L     L+    L+ L L  N +Q 
Sbjct: 35  NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE 94

Query: 78  LKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSI-----CKLDQMKELN 132
           L     +     L+   N +  +   +     + + L +N+I  +         +++ L+
Sbjct: 95  LLVGPSI---ETLHAANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150

Query: 133 -------TLGMDSYFFNLNN---LNLQGN 151
                  T+       + +    LNLQ N
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYN 179

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 59.2 bits (144), Expect = 6e-10
 Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 12/135 (8%)

Query: 19  NSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSL-EGLKHCVNLKWLSLVQNKLQS 77
           ++++ L+L +  + DV     F  L+ LDLSSN L  +    +    + W+SL  NKL  
Sbjct: 169 DTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL 228

Query: 78  L-KGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGM 136
           + K +         ++  N            +LR     +  + ++     +K+L   G 
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHC-------GTLRDFFSKNQRVQTV-AKQTVKKLT--GQ 278

Query: 137 DSYFFNLNNLNLQGN 151
           +     +  L   G 
Sbjct: 279 NEEECTVPTLGHYGA 293

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 37/143 (25%), Positives = 58/143 (40%), Gaps = 17/143 (11%)

Query: 18  PNSIKSLSLTHKALSDV--SCLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQN 73
           P S K+L L+   L  +       F  L+ LDLS   + ++E    +   +L  L L  N
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 74  KLQSL--KGIEGLSKPTVLNVGKNKLRSMDDVT--SVVSLRALILNDNEIVSICKLDQMK 129
            +QSL      GLS    L   +  L S+++     + +L+ L +  N I S    +   
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 130 ELNTLGMDSYFFNLNNLNLQGNP 152
            L          NL +L+L  N 
Sbjct: 147 NLT---------NLEHLDLSSNK 160

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 63.6 bits (155), Expect = 4e-11
 Identities = 33/156 (21%), Positives = 54/156 (34%), Gaps = 23/156 (14%)

Query: 20  SIKSLSLTHKALSDV-SCLTDFNNLERLDLSSNNLTSLEG---LKHCVNLKWLSLVQNKL 75
           S+K L L+   +  + S       LE LD   +NL  +          NL +L +     
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 76  QSLK--GIEGLSKPTVLNVGKNKLRSM---DDVTSVVSLRALILNDNEIVSICK--LDQM 128
           +        GLS   VL +  N  +     D  T + +L  L L+  ++  +     + +
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 129 KELNTLGMDS------------YFFNLNNLNLQGNP 152
             L  L M S               +L  + L  NP
Sbjct: 494 SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.4 bits (139), Expect = 4e-09
 Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 24/158 (15%)

Query: 18  PNSIKSLSLTHKALSDVS----CLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQN 73
            +   +    H  L +            +L+RL  +SN   +        +L++L L +N
Sbjct: 298 KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN 357

Query: 74  KLQSLKG----IEGLSKPTVLNVGKNKLRSMDDV-TSVVSLRALILNDNEIVSI---CKL 125
            L           G +    L++  N + +M      +  L  L    + +  +      
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417

Query: 126 DQMKELNTL--------GMDSYFF----NLNNLNLQGN 151
             ++ L  L           +  F    +L  L + GN
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 28/150 (18%), Positives = 45/150 (30%), Gaps = 19/150 (12%)

Query: 20  SIKSLSLTHKALSDVSCLTDFNNLERL---DLSSNNLTSLEGLKHCVNLKWLSLVQNKLQ 76
           +I+   L +        +  FN L  +    L S  +  ++   +    + L LV  K  
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG 317

Query: 77  SLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSI----CKLDQMKELN 132
               +  L     L    NK  +      + SL  L L+ N +               L 
Sbjct: 318 QFPTL-KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 133 TL--------GMDSYFFNLNN---LNLQGN 151
            L         M S F  L     L+ Q +
Sbjct: 377 YLDLSFNGVITMSSNFLGLEQLEHLDFQHS 406

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 9/109 (8%)

Query: 18  PNSIKSLSLTHKALSDV--SCLTDFNNLERLDLSSNNLTSL---EGLKHCVNLKWLSLVQ 72
             ++  L ++H              ++LE L ++ N+       +      NL +L L Q
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

Query: 73  NKLQSL-KGI-EGLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDN 117
            +L+ L       LS   VLN+  N+L+S+ D     + SL+ + L+ N
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 28/167 (16%), Positives = 53/167 (31%), Gaps = 32/167 (19%)

Query: 17  DPNSIKSLSLTHKALSD--------VSCLTDFNNLERLDL------SSNNLTSLEGLKHC 62
            P + K + L    L +         +C+     LE   L      +  NL   +     
Sbjct: 193 QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD-KSAL 251

Query: 63  VNLKWLSLVQNKLQSLKGI--------EGLSKPTVLNVGKNKLRSMDDVTSVVSLRALIL 114
             L  L++ + +L  L             L+  +  ++    +  + D +     + L L
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLEL 311

Query: 115 NDNEIVSIC--KLDQMKEL----NTLGMDSYFFNLNNL---NLQGNP 152
            + +       KL  +K L    N  G      +L +L   +L  N 
Sbjct: 312 VNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 7/86 (8%)

Query: 19  NSIKSLSLTHKALSDV---SCLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQN 73
           +S++ L +   +  +       T+  NL  LDLS   L  L         +L+ L++  N
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504

Query: 74  KLQSLKG--IEGLSKPTVLNVGKNKL 97
           +L+S+     + L+    + +  N  
Sbjct: 505 QLKSVPDGIFDRLTSLQKIWLHTNPW 530

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.9 bits (161), Expect = 6e-12
 Identities = 35/156 (22%), Positives = 58/156 (37%), Gaps = 21/156 (13%)

Query: 18  PNSIKSLSLTHKALSDV--SCLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQN 73
             + + L+L    +  +  +      +LE L LS N++ ++E        NL  L L  N
Sbjct: 63  STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122

Query: 74  KLQSLKG--IEGLSKPTVLNVGKNKLRSMDDVT--SVVSLRALILND-NEIVSI-----C 123
           +L ++       LSK   L +  N + S+       + SLR L L +   +  I      
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182

Query: 124 KLDQMKEL----NTLGMDSYFFNLNNL---NLQGNP 152
            L  ++ L      L        L  L   +L GN 
Sbjct: 183 GLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNH 218

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.5 bits (160), Expect = 7e-12
 Identities = 24/140 (17%), Positives = 54/140 (38%), Gaps = 22/140 (15%)

Query: 17  DPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQ 76
           +   +  +S               +NL  L+L+  NL  +  L   + L  L L  N L 
Sbjct: 169 ELKRLSYIS--------EGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLS 220

Query: 77  SLKG--IEGLSKPTVLNVGKNKLRSMDDVT--SVVSLRALILNDNEIVSICKLDQMKELN 132
           +++    +GL     L + +++++ ++     ++ SL  + L  N +  +          
Sbjct: 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL---------- 270

Query: 133 TLGMDSYFFNLNNLNLQGNP 152
              + +   +L  ++L  NP
Sbjct: 271 PHDLFTPLHHLERIHLHHNP 290

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 63.2 bits (154), Expect = 4e-11
 Identities = 28/153 (18%), Positives = 57/153 (37%), Gaps = 21/153 (13%)

Query: 20  SIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKL 75
            ++ L L+   +  +         NL  L+L  N LT++      +   LK L L  N +
Sbjct: 89  HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI 148

Query: 76  QSLKG--IEGLSKPTVLNVGK-NKLRSMDDVT--SVVSLRALILNDNEIVSICKLDQMKE 130
           +S+       +     L++G+  +L  + +     + +LR L L    +  I  L  + +
Sbjct: 149 ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIK 208

Query: 131 LNTLGMD------------SYFFNLNNLNLQGN 151
           L+ L +                 +L  L +  +
Sbjct: 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 65.6 bits (160), Expect = 8e-12
 Identities = 31/137 (22%), Positives = 49/137 (35%), Gaps = 20/137 (14%)

Query: 19  NSIKSLSLTHKALSDV--SCLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNK 74
           N  K   +T  +L     S      N++ LDLS N L+ +    L     L+ L+L  N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 75  LQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTL 134
           L     +E LS    L++  N ++ +       S+  L   +N I  +            
Sbjct: 70  LYETLDLESLSTLRTLDLNNNYVQELLVGP---SIETLHAANNNISRV------------ 114

Query: 135 GMDSYFFNLNNLNLQGN 151
              S      N+ L  N
Sbjct: 115 -SCSRGQGKKNIYLANN 130

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 62.2 bits (151), Expect = 1e-10
 Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 5/120 (4%)

Query: 20  SIKSLSLTH---KALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQ 76
            ++ L L       ++        + LE L+L  N +  ++G      LK L L  NKL 
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA 204

Query: 77  SL-KGIEGLSKPTVLNVGKNKLRSMDD-VTSVVSLRALILNDNEIVSICKLDQMKELNTL 134
            +    +  +  T +++  NKL  ++  +    +L    L  N        D   +   +
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 59.9 bits (145), Expect = 5e-10
 Identities = 33/149 (22%), Positives = 59/149 (39%), Gaps = 21/149 (14%)

Query: 20  SIKSLSLTHKALSDV--SCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQS 77
           ++K L L+   LS +  + L  F  LE L+LSSN L     L+    L+ L L  N +Q 
Sbjct: 35  NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE 94

Query: 78  LKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSI-----CKLDQMKELN 132
              +        L+   N +  +   +     + + L +N+I  +         +++ L+
Sbjct: 95  ---LLVGPSIETLHAANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150

Query: 133 -------TLGMDSYFFNLNN---LNLQGN 151
                  T+       + +    LNLQ N
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYN 179

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 65.7 bits (160), Expect = 9e-12
 Identities = 29/153 (18%), Positives = 57/153 (37%), Gaps = 17/153 (11%)

Query: 7   QQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSL-EGLKHCVNL 65
             +++  + C  N    L++    L+ +       ++  L +  NNLTSL         L
Sbjct: 28  AAVVQKMRACLNNGNAVLNVGESGLTTLP-DCLPAHITTLVIPDNNLTSLPALPP---EL 83

Query: 66  KWLSLVQNKLQSL-KGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSI-C 123
           + L +  N+L SL     GL + ++ +     L ++        L  L +  N++ S+  
Sbjct: 84  RTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPS-----GLCKLWIFGNQLTSLPV 138

Query: 124 KLDQMKELNTLGM-----DSYFFNLNNLNLQGN 151
               ++EL+          +    L  L    N
Sbjct: 139 LPPGLQELSVSDNQLASLPALPSELCKLWAYNN 171

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.4 bits (136), Expect = 7e-09
 Identities = 38/164 (23%), Positives = 65/164 (39%), Gaps = 21/164 (12%)

Query: 18  PNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSL-EGLKHCVNLKWLSLVQNKLQ 76
           P+ +  L   +  L+ +      + L+ L +S N L SL         L  L    N+L 
Sbjct: 160 PSELCKLWAYNNQLTSLP--MLPSGLQELSVSDNQLASLPTLPS---ELYKLWAYNNRLT 214

Query: 77  SL-KGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSI-CKLDQMKELNTL 134
           SL     GL     L V  N+L S+        L+ L+++ N + S+      +  L+  
Sbjct: 215 SLPALPSGL---KELIVSGNRLTSLPV--LPSELKELMVSGNRLTSLPMLPSGLLSLSVY 269

Query: 135 G-----MDSYFFNLNNL---NLQGNPVAEYDKLAKKVKTLLPNL 170
                 +     +L++    NL+GNP++E    A +  T  P  
Sbjct: 270 RNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGY 313

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 22/140 (15%)

Query: 17  DPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQ 76
           +   ++ +S                NL+ L+L   N+  +  L   V L+ L +  N   
Sbjct: 180 ELKKLEYIS--------EGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFP 231

Query: 77  SLKG--IEGLSKPTVLNVGKNKLRSMDDVT--SVVSLRALILNDNEIVSICKLDQMKELN 132
            ++     GLS    L V  +++  ++      + SL  L L  N + S+          
Sbjct: 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL---------- 281

Query: 133 TLGMDSYFFNLNNLNLQGNP 152
              + +    L  L+L  NP
Sbjct: 282 PHDLFTPLRYLVELHLHHNP 301

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 34/156 (21%), Positives = 56/156 (35%), Gaps = 21/156 (13%)

Query: 18  PNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQN 73
           P++ + L+L    +  +        ++LE L L  N++  +E        +L  L L  N
Sbjct: 74  PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133

Query: 74  KLQSLKG--IEGLSKPTVLNVGKNKLRSMDDVT--SVVSLRALILND-NEIVSI-----C 123
            L  +     E LSK   L +  N + S+       V SL  L L +  ++  I      
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE 193

Query: 124 KLDQMKEL----NTLGMDSYFFNLNN---LNLQGNP 152
            L  +K L      +        L     L + GN 
Sbjct: 194 GLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNH 229

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.0 bits (156), Expect = 2e-11
 Identities = 27/153 (17%), Positives = 55/153 (35%), Gaps = 21/153 (13%)

Query: 20  SIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKL 75
            ++ L L   ++  +         +L  L+L  N LT +     ++   L+ L L  N +
Sbjct: 100 HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI 159

Query: 76  QSLKG--IEGLSKPTVLNVGK-NKLRSMDDVT--SVVSLRALILNDNEIVSICKLDQMKE 130
           +S+       +     L++G+  KL  + +     + +L+ L L    I  +  L  +  
Sbjct: 160 ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVG 219

Query: 131 LNTLGMD------------SYFFNLNNLNLQGN 151
           L  L M                 +L  L +  +
Sbjct: 220 LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 31/158 (19%), Positives = 53/158 (33%), Gaps = 25/158 (15%)

Query: 20  SIKSLSLTH---KALSDVSCLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNK 74
            ++ L   H   K +S+ S      NL  LD+S  +             +L+ L +  N 
Sbjct: 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161

Query: 75  LQSL---KGIEGLSKPTVLNVGKNKLRSMDDVT--SVVSLRALILNDNEIVSICK--LDQ 127
            Q          L   T L++ + +L  +      S+ SL+ L ++ N   S+       
Sbjct: 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221

Query: 128 MKELNTLGMDS-------------YFFNLNNLNLQGNP 152
           +  L  L                 +  +L  LNL  N 
Sbjct: 222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 32/159 (20%), Positives = 54/159 (33%), Gaps = 25/159 (15%)

Query: 18  PNSIKSLSLTHKALSDV--SCLTDFNNLERLDLSSNNLTSLE----GLKHCVNLKWLSLV 71
           P+S   L L    L  +          L +L LSSN L+             +LK+L L 
Sbjct: 27  PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 72  QNKLQSL-KGIEGLSKPTVLNVGKNKLRSMDDV---TSVVSLRALILNDNEIVSI--CKL 125
            N + ++     GL +   L+   + L+ M +     S+ +L  L ++            
Sbjct: 87  FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 126 DQMKELNTLGMD-------------SYFFNLNNLNLQGN 151
           + +  L  L M              +   NL  L+L   
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 25/154 (16%), Positives = 61/154 (39%), Gaps = 10/154 (6%)

Query: 19  NSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSL 78
           + +K + + + +L  +  L    +LE +   +N L  L  L++   L  +    N L+ L
Sbjct: 153 SFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKL 210

Query: 79  KGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSI-CKLDQMKELNTLG-- 135
              +       +  G N L  + ++ ++  L  +  ++N + ++      ++ LN     
Sbjct: 211 --PDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNY 268

Query: 136 ---MDSYFFNLNNLNLQGNPVAEYDKLAKKVKTL 166
              +     +L  L++  N  +   +L   +  L
Sbjct: 269 LTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 302

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 32/172 (18%), Positives = 63/172 (36%), Gaps = 30/172 (17%)

Query: 6   TQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSL-EGLKHCV- 63
            +  +   + C       L L +  LS +       +LE L  S N+LT L E  +    
Sbjct: 58  REMAVSRLRDCLDRQAHELELNNLGLSSLP--ELPPHLESLVASCNSLTELPELPQSLKS 115

Query: 64  ----------------NLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVV 107
                            L++L +  N+L+ L  ++  S   +++V  N L+ + D     
Sbjct: 116 LLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPD--LPP 173

Query: 108 SLRALILNDNEIVSICKLDQMKELNTLGMD--------SYFFNLNNLNLQGN 151
           SL  +   +N++  + +L  +  L  +  D            +L ++    N
Sbjct: 174 SLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNN 225

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 28/136 (20%), Positives = 45/136 (33%), Gaps = 30/136 (22%)

Query: 42  NLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMD 101
           +LE +   +N L  L  L++   L  +    N L++L   +       LNV  N L  + 
Sbjct: 216 SLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLP--DLPPSLEALNVRDNYLTDLP 273

Query: 102 DV------------------TSVVSLRALILNDNEIVSICKLDQMKELNTLGMD------ 137
           ++                      +L  L  + NEI S+C  D    L  L +       
Sbjct: 274 ELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLC--DLPPSLEELNVSNNKLIE 331

Query: 138 --SYFFNLNNLNLQGN 151
             +    L  L    N
Sbjct: 332 LPALPPRLERLIASFN 347

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 28/157 (17%), Positives = 59/157 (37%), Gaps = 23/157 (14%)

Query: 18  PNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQS 77
           P S++ L++++  L ++  L     LERL  S N+L  +  L    NLK L +  N L+ 
Sbjct: 316 PPSLEELNVSNNKLIELPAL--PPRLERLIASFNHLAEVPEL--PQNLKQLHVEYNPLRE 371

Query: 78  LKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD 137
               +       L +  + L  + +     +L+ L +  N +     +            
Sbjct: 372 FP--DIPESVEDLRMN-SHLAEVPE--LPQNLKQLHVETNPLREFPDI------------ 414

Query: 138 SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFN 174
               ++ +L +    V +  + A +    L +    +
Sbjct: 415 --PESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEH 449

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 64.1 bits (156), Expect = 1e-11
 Identities = 34/170 (20%), Positives = 60/170 (35%), Gaps = 25/170 (14%)

Query: 8   QILKDNKTCDPNSIKSLSLTHKALSDVSC--LTDFNNLERLDLSSNNLTSLEGLKHCV-- 63
             L + +      +K LS+      + SC  +  F  L  LDLS N      GL   +  
Sbjct: 138 AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197

Query: 64  ----NLKWLSLVQNKLQSLKGI-----EGLSKPTVLNVGKNKLRSMDDVTS---VVSLRA 111
                L+ L+L    +++  G+         +   L++  N LR      S      L +
Sbjct: 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS 257

Query: 112 LILNDNEIVSI--CKLDQMKELN-------TLGMDSYFFNLNNLNLQGNP 152
           L L+   +  +      ++  L+                 + NL+L+GNP
Sbjct: 258 LNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNP 307

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 58.0 bits (140), Expect = 1e-09
 Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 11/106 (10%)

Query: 19  NSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCV---NLKWLSLVQNKL 75
             +++ S    AL           L+ LDLS N+L    G   C     L  L+L    L
Sbjct: 211 AGMETPSGVCSAL-----AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265

Query: 76  QSL-KGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIV 120
           + + KG+   +K +VL++  N+L        +  +  L L  N  +
Sbjct: 266 KQVPKGL--PAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFL 309

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 18  PNSIKSLSLTHKALSDV-SCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKL 75
           P+ + SL+L+   L  V   L     L  LDLS N L           +  LSL  N  
Sbjct: 252 PSQLNSLNLSFTGLKQVPKGL--PAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 24/164 (14%), Positives = 51/164 (31%), Gaps = 18/164 (10%)

Query: 19  NSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSL----EGLKHCVNLKWLSLVQNK 74
            ++++  +  + L     +   + L+ L L +  +T             +L  L+L    
Sbjct: 73  LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132

Query: 75  LQ----SLKGIEGLSKP--TVLNVGKNKLRSM--DDVTSVVSLRALILNDNEIVSICKLD 126
                  L  ++   KP   VL++ +    +   + V    +L  L L+DN  +    L 
Sbjct: 133 WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192

Query: 127 QMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNL 170
                           L  L L+   +     +   +      L
Sbjct: 193 SALCPLKFP------TLQVLALRNAGMETPSGVCSALAAARVQL 230

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 35/165 (21%), Positives = 82/165 (49%), Gaps = 21/165 (12%)

Query: 18  PNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQS 77
                  +L  K+++D     + N+++++  +++++ S++G+++  N+++L+L  NKL  
Sbjct: 18  FAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD 77

Query: 78  LKGIEGLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDNEIVSICK--LDQMKELNT 133
           +  ++ L+  T L +  N+L+S+ +     + +L+ L+L +N++ S+     D++  L  
Sbjct: 78  ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137

Query: 134 LGMDS------------YFFNLNNLNLQGN-----PVAEYDKLAK 161
           L +                 NL  L+L  N     P   +DKL +
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQ 182

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 64.4 bits (157), Expect = 2e-11
 Identities = 28/167 (16%), Positives = 60/167 (35%), Gaps = 20/167 (11%)

Query: 3   RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSC----LTDFNNLERLDLSSNNLTSL-E 57
            +  + +          S+++L L+   L  +      L    NL  LD+S N    + +
Sbjct: 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD 404

Query: 58  GLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDN 117
             +    +++L+L    ++ +K         VL+V  N L S      +  L+ L ++ N
Sbjct: 405 SCQWPEKMRFLNLSSTGIRVVKT-CIPQTLEVLDVSNNNLDSFS--LFLPRLQELYISRN 461

Query: 118 EIVSICKLDQMKELNTLGMDS------------YFFNLNNLNLQGNP 152
           ++ ++        L  + +                 +L  + L  NP
Sbjct: 462 KLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 33/160 (20%), Positives = 64/160 (40%), Gaps = 27/160 (16%)

Query: 15  TCDPNSIKSLSLTHKALSDV-SCLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLV 71
           +CD  +        ++ + + S L     ++ LDLS N +T +    L+ C NL+ L L 
Sbjct: 3   SCD--ASGVCDGRSRSFTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILK 58

Query: 72  QNKLQSLKG--IEGLSKPTVLNVGKNKLRSMDDVT--SVVSLRALILNDNEIVSICK--- 124
            +++ +++G     L     L++  N L S+       + SL+ L L  N   ++     
Sbjct: 59  SSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118

Query: 125 LDQMKELNTLGMDSY-------------FFNLNNLNLQGN 151
              +  L TL + +                +LN L ++  
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.4 bits (144), Expect = 8e-10
 Identities = 23/155 (14%), Positives = 56/155 (36%), Gaps = 23/155 (14%)

Query: 20  SIKSLSLTHKALSDV--SCLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKL 75
           +I+ L +    L     +  +    ++R+ + ++ +  +     +H  +L++L L +N +
Sbjct: 287 TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLM 346

Query: 76  QSLKGIE-----GLSKPTVLNVGKNKLRSMDDVTSV----VSLRALILNDNEIVSICK-L 125
                              L + +N LRSM     +     +L +L ++ N    +    
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSC 406

Query: 126 DQMKELNTLGMDS---------YFFNLNNLNLQGN 151
              +++  L + S             L  L++  N
Sbjct: 407 QWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNN 441

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.7 bits (137), Expect = 6e-09
 Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 5/110 (4%)

Query: 18  PNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQS 77
           P  ++ L+L+   +  V        LE LD+S+NNL S         L+ L + +NKL++
Sbjct: 409 PEKMRFLNLSSTGIRVVK-TCIPQTLEVLDVSNNNLDSFS--LFLPRLQELYISRNKLKT 465

Query: 78  LKGIEGLSKPTVLNVGKNKLRSMDDVT--SVVSLRALILNDNEIVSICKL 125
           L          V+ + +N+L+S+ D     + SL+ + L+ N     C  
Sbjct: 466 LPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 53.6 bits (129), Expect = 5e-08
 Identities = 25/157 (15%), Positives = 51/157 (32%), Gaps = 24/157 (15%)

Query: 19  NSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQ 76
           N +   + +   +       +   + RL +    L             +K +++  +K+ 
Sbjct: 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323

Query: 77  SLKG--IEGLSKPTVLNVGKNKLRSMDDVTSVV-----SLRALILNDNEIVSICK----L 125
            +     + L     L++ +N +       S       SL+ L+L+ N + S+ K    L
Sbjct: 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 383

Query: 126 DQMKELNTL--------GMDSYFFNLNN---LNLQGN 151
             +K L +L         M            LNL   
Sbjct: 384 LTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSST 420

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 27/132 (20%), Positives = 45/132 (34%), Gaps = 15/132 (11%)

Query: 24  LSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSL--KGI 81
           L L+     D +     N L   + S +++ S  G    V ++ L + Q  L        
Sbjct: 251 LELSEVEFDDCT----LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY 306

Query: 82  EGLSKPTVLNVGKNKLRSMDDVT--SVVSLRALILNDNEIVSICKLDQMKELNTLGMDSY 139
             L K   + V  +K+  +       + SL  L L++N +V    L              
Sbjct: 307 SLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEE-YLKNSACKGAWP---- 361

Query: 140 FFNLNNLNLQGN 151
             +L  L L  N
Sbjct: 362 --SLQTLVLSQN 371

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 4/85 (4%)

Query: 15  TCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNK 74
           TC P +++ L +++  L   S       L+ L +S N L +L        L  + + +N+
Sbjct: 427 TCIPQTLEVLDVSNNNLDSFS--LFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQ 484

Query: 75  LQSLKG--IEGLSKPTVLNVGKNKL 97
           L+S+     + L+    + +  N  
Sbjct: 485 LKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 19/138 (13%), Positives = 41/138 (29%), Gaps = 5/138 (3%)

Query: 37  LTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSLKGI--EGLSKPTVLNV 92
                +L  L++ + +L + +   LK   ++  L+L  ++   L  I  + LS    L +
Sbjct: 144 FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203

Query: 93  GKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNP 152
               L         V   +  +          L        L +  Y   L+ +      
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAF-RGSVLTDESFNELLKLLRYILELSEVEFDDCT 262

Query: 153 VAEYDKLAKKVKTLLPNL 170
           +            ++  L
Sbjct: 263 LNGLGDFNPSESDVVSEL 280

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 64.4 bits (157), Expect = 2e-11
 Identities = 33/143 (23%), Positives = 65/143 (45%), Gaps = 18/143 (12%)

Query: 18  PNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQN 73
            + +K+  L+   +  +     + F +LE+L L+ N +  ++        +L  L+L QN
Sbjct: 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333

Query: 74  KLQSL-KGI-EGLSKPTVLNVGKNKLRSM-DDV-TSVVSLRALILNDNEIVSICKLDQMK 129
            L S+   + E L K  VL++  N +R++ D     + +L+ L L+ N++ S+       
Sbjct: 334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV------- 386

Query: 130 ELNTLGMDSYFFNLNNLNLQGNP 152
                G+     +L  + L  NP
Sbjct: 387 ---PDGIFDRLTSLQKIWLHTNP 406

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 56.7 bits (137), Expect = 5e-09
 Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 11/117 (9%)

Query: 42  NLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSLK---GI-EGLSKPTVLNVGKN 95
           +L  L L  N    LE        NL+ L+L Q  L          + L+   +L +  N
Sbjct: 80  SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139

Query: 96  KLRSMDDVT---SVVSLRALILNDNEIVSICK--LDQMKELNTLGMDSYFFNLNNLN 147
            ++ +   +   ++     L L  N++ SIC+  L   +  +   +      L ++N
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMN 196

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 56.7 bits (137), Expect = 5e-09
 Identities = 28/149 (18%), Positives = 53/149 (35%), Gaps = 26/149 (17%)

Query: 18  PNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLT---SLEGLKHCVNLKWLSLVQ 72
           P  +  + L+  ++++++    +   +L+ L +              +   +L  L L  
Sbjct: 29  PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88

Query: 73  NKLQSL-KGI-EGLSKPTVLNVGKNKLRSM---DDV-TSVVSLRALILNDNEIVSICKLD 126
           N+   L  G   GL+   VL + +  L       +    + SL  L+L DN I  I    
Sbjct: 89  NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP-- 146

Query: 127 QMKELNTLGMDSYFFNLNNL---NLQGNP 152
                      S+F N+      +L  N 
Sbjct: 147 ----------ASFFLNMRRFHVLDLTFNK 165

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 24/171 (14%), Positives = 49/171 (28%), Gaps = 29/171 (16%)

Query: 19  NSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLE------GLKHCVNLKWLSLVQ 72
            ++    L+         LT   +LE L L  NN+  ++       ++       L L  
Sbjct: 113 CNLDGAVLSGNFFKP---LT---SLEMLVLRDNNIKKIQPASFFLNMR---RFHVLDLTF 163

Query: 73  NKLQSLKG--IEGLSKP--TVLNVGKNKLRSMDDVT----------SVVSLRALILNDNE 118
           NK++S+    +        T+L +    L+ M++               S+  L L+ N 
Sbjct: 164 NKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG 223

Query: 119 IVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPN 169
                       +    + S   + +           +          L  
Sbjct: 224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEA 274

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 41/148 (27%), Positives = 60/148 (40%), Gaps = 29/148 (19%)

Query: 18  PNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE-----GLKHCVNLKWLSL 70
           P S K+L L+   L  +       F  L+ LDLS   + ++E      L    +L  L L
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL---SHLSTLIL 83

Query: 71  VQNKLQSL-KGI-EGLSKPTVLNVGKNKLRSMDDVT--SVVSLRALILNDNEIVSICKLD 126
             N +QSL  G   GLS    L   +  L S+++     + +L+ L +  N I S     
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS----- 138

Query: 127 QMKELNTLGMDSYFFNLNNL---NLQGN 151
                    +  YF NL NL   +L  N
Sbjct: 139 -------FKLPEYFSNLTNLEHLDLSSN 159

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 52.3 bits (126), Expect = 8e-08
 Identities = 36/160 (22%), Positives = 68/160 (42%), Gaps = 28/160 (17%)

Query: 20  SIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKL 75
            + +L LT   +  ++    +  ++L++L     NL SLE   + H   LK L++  N +
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

Query: 76  QSLKGIE---GLSKPTVLNVGKNKLRSM--DDVTSVVSLRA----LILNDNEIVSICK-- 124
           QS K  E    L+    L++  NK++S+   D+  +  +      L L+ N +  I    
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196

Query: 125 LDQMKELNTLGMDS------------YFFNLNNLNLQGNP 152
             +++ L  L +D+               +L  + L  NP
Sbjct: 197 FKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.0 bits (102), Expect = 9e-05
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 12/113 (10%)

Query: 17  DPNSIKSLSLTHKALSDVSCLTDFN---NLERLDLSSNNLTSLEG--LKHCVNLKW---- 67
              ++K L++ H  +        F+   NLE LDLSSN + S+    L+    +      
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 68  LSLVQNKLQSL-KGIEGLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDN 117
           L L  N +  +  G     +   L +  N+L+S+ D     + SL+ + L+ N
Sbjct: 182 LDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 61.6 bits (150), Expect = 4e-11
 Identities = 31/144 (21%), Positives = 60/144 (41%), Gaps = 19/144 (13%)

Query: 18  PNSIKSLSLTHKALSDVSCLTDF---NNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQ 72
           P     L L +   + +     F     L +++ S+N +T +E    +    +  + L  
Sbjct: 31  PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90

Query: 73  NKLQSL-KGI-EGLSKPTVLNVGKNKLRS-MDDV-TSVVSLRALILNDNEIVSICKLDQM 128
           N+L+++   + +GL     L +  N++    +D    + S+R L L DN+I ++      
Sbjct: 91  NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV------ 144

Query: 129 KELNTLGMDSYFFNLNNLNLQGNP 152
                 G      +L+ LNL  NP
Sbjct: 145 ----APGAFDTLHSLSTLNLLANP 164

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 61.9 bits (151), Expect = 5e-11
 Identities = 34/156 (21%), Positives = 54/156 (34%), Gaps = 23/156 (14%)

Query: 20  SIKSLSLTH-KALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNK 74
            ++ L L+    L  V          L  L L    L  L     +    L++L L  N 
Sbjct: 81  LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA 140

Query: 75  LQSL--KGIEGLSKPTVLNVGKNKLRSMDDVT--SVVSLRALILNDNEIVSICK--LDQM 128
           LQ+L       L   T L +  N++ S+ +     + SL  L+L+ N +  +       +
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200

Query: 129 KELNTLGMDS------------YFFNLNNLNLQGNP 152
             L TL + +                L  L L  NP
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.5 bits (142), Expect = 8e-10
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 23/157 (14%)

Query: 18  PNSIKSLSLTHKALSDV--SCLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQN 73
           P + + + L    +S V  +      NL  L L SN L  ++         L+ L L  N
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 74  -KLQSLKG--IEGLSKPTVLNVGKNKLRSMDDVT--SVVSLRALILNDNEIVSI--CKLD 126
            +L+S+      GL +   L++ +  L+ +       + +L+ L L DN + ++      
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 127 QMKELNTLGMDS---------YFFNLNNL---NLQGN 151
            +  L  L +            F  L++L    L  N
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 63.1 bits (154), Expect = 6e-11
 Identities = 39/145 (26%), Positives = 59/145 (40%), Gaps = 23/145 (15%)

Query: 18  PNSIKSLSLTHKALSDV--SCLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQN 73
           P S K+L L+   L  +       F  L+ LDLS   + ++E    +   +L  L L  N
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 74  KLQSL--KGIEGLSKPTVLNVGKNKLRSMDDVT--SVVSLRALILNDNEIVSICKLDQMK 129
            +QSL      GLS    L   +  L S+++     + +L+ L +  N I S        
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF------- 139

Query: 130 ELNTLGMDSYFFNLNNL---NLQGN 151
                 +  YF NL NL   +L  N
Sbjct: 140 -----KLPEYFSNLTNLEHLDLSSN 159

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.0 bits (146), Expect = 6e-10
 Identities = 31/159 (19%), Positives = 52/159 (32%), Gaps = 25/159 (15%)

Query: 19  NSIKSLSLTH---KALSDVSCLTDFNNLERLDLSSNNLTSL--EGLKHCVNLKWLSLVQN 73
             ++ L   H   K +S+ S      NL  LD+S  +             +L+ L +  N
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

Query: 74  KLQSL---KGIEGLSKPTVLNVGKNKLRSM--DDVTSVVSLRALILNDNEIVSI--CKLD 126
             Q          L   T L++ + +L  +      S+ SL+ L ++ N   S+      
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 515

Query: 127 QMKELNTL--------GMDSYFF-----NLNNLNLQGNP 152
            +  L  L                    +L  LNL  N 
Sbjct: 516 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 554

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.9 bits (130), Expect = 6e-08
 Identities = 28/148 (18%), Positives = 46/148 (31%), Gaps = 18/148 (12%)

Query: 19  NSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSL 78
             +  L      + D+       N+    L S  +  ++   +    + L LV  K    
Sbjct: 262 FRLAYLDYYLDDIIDL--FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF 319

Query: 79  KGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIV-------SICKLDQMKEL 131
             +  L     L    NK  +      + SL  L L+ N +        S      +K L
Sbjct: 320 PTL-KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378

Query: 132 ----NTL-GMDSYFFNLNNL---NLQGN 151
               N +  M S F  L  L   + Q +
Sbjct: 379 DLSFNGVITMSSNFLGLEQLEHLDFQHS 406

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 31/156 (19%), Positives = 56/156 (35%), Gaps = 23/156 (14%)

Query: 19  NSIKSLSLTHKALSDVSC-LTDFNNLERLDLSSNNLTSL---EGLKHCVNLKWLSLVQNK 74
            S+K L L+   +  +S        LE LD   +NL  +          NL +L +    
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 75  LQSL--KGIEGLSKPTVLNVGKNKLRSM---DDVTSVVSLRALILNDNEIVSICK--LDQ 127
            +        GLS   VL +  N  +     D  T + +L  L L+  ++  +     + 
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 128 MKELNTL--------GMDSYFF----NLNNLNLQGN 151
           +  L  L         +D++ +    +L  L+   N
Sbjct: 493 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 528

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 22/144 (15%), Positives = 48/144 (33%), Gaps = 11/144 (7%)

Query: 10  LKDNKTCDPNSIKSLSLTH-KALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWL 68
           L   +  +  +++    +  + L +++       L  LD   +++  L       N+   
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIE--EFRLAYLDYYLDDIIDL--FNCLTNVSSF 287

Query: 69  SLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQM 128
           SLV   ++ +K          L +   K      +    SL+ L    N+  +      +
Sbjct: 288 SLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKL-KSLKRLTFTSNKGGNAFSEVDL 346

Query: 129 KELNTLGMDSYFFNLNNLNLQGNP 152
             L  L       + N L+ +G  
Sbjct: 347 PSLEFL-----DLSRNGLSFKGCC 365

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 24/165 (14%), Positives = 49/165 (29%), Gaps = 30/165 (18%)

Query: 17  DPNSIKSLSLTHKALSD--------VSCLTDFNNLERLDLSSNNLTSLEGLKH-----CV 63
            P + K + L    L +         +C+     LE   L      +   L+        
Sbjct: 193 QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252

Query: 64  NLKWLSLVQNKLQSLKGI--------EGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILN 115
            L  L++ + +L  L             L+  +  ++    +  + D +     + L L 
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELV 312

Query: 116 DNEIVSICK--LDQMKELNTLGMDSY----FFNLNNL---NLQGN 151
           + +        L  +K L              +L +L   +L  N
Sbjct: 313 NCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN 357

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 20/131 (15%)

Query: 42  NLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSL-KGI-EGLSKPTVLNVGKNKL 97
            +  + L  N +  +          L+ + L  N++  L     +GL     L +  NK+
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92

Query: 98  RSMDDVT--SVVSLRALILNDNEIVSICK--LDQMKELNTL------------GMDSYFF 141
             +       + SL+ L+LN N+I  +       +  LN L            G  S   
Sbjct: 93  TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152

Query: 142 NLNNLNLQGNP 152
            +  ++L  NP
Sbjct: 153 AIQTMHLAQNP 163

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.9 bits (148), Expect = 1e-10
 Identities = 40/154 (25%), Positives = 61/154 (39%), Gaps = 20/154 (12%)

Query: 18  PNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKL 75
           P     L L+   L   S   L  +  L +L+L    LT L+       L  L L  N+L
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL 89

Query: 76  QSL-KGIEGLSKPTVLNVGKNKLRSM-DDV-TSVVSLRALILNDNEIVSI-----CKLDQ 127
           QSL    + L   TVL+V  N+L S+       +  L+ L L  NE+ ++         +
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149

Query: 128 MKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAK 161
           +++L          +L N NL   P    + L  
Sbjct: 150 LEKL----------SLANNNLTELPAGLLNGLEN 173

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.4 bits (149), Expect = 1e-10
 Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 19/141 (13%)

Query: 23  SLSLTHKALSDVSC--LTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSL 78
           SL L+H  L+ +S        NL  LDLSSN+L +L+         L+ L L  N +  +
Sbjct: 68  SLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVV 127

Query: 79  -KGI-EGLSKPTVLNVGKNKLRSM-----DDVTSVVSLRALILNDNEIVSICKLDQMKEL 131
            +   E +++   L + +N++         D   +  L  L L+ N++  +  L  +++L
Sbjct: 128 DRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL-PLTDLQKL 186

Query: 132 NTLGMDSYFFNLNNLNLQGNP 152
                       N L L  NP
Sbjct: 187 PAW-------VKNGLYLHNNP 200

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.9 bits (140), Expect = 2e-09
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 15/134 (11%)

Query: 15  TCDPNSIKSLSLTHKALSDV-SCLTDFNNLERLDLSSNNLTSLEG---LKHCVNLKWLSL 70
            C  N    LS + + L +V   L   +    LDLS NNL+ L          NL  L L
Sbjct: 17  LCASNI---LSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLL 71

Query: 71  VQNKLQSL-KGI-EGLSKPTVLNVGKNKLRSMDDVT--SVVSLRALILNDNEIVSICK-- 124
             N L  +       +     L++  N L ++D+     + +L  L+L +N IV + +  
Sbjct: 72  SHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNA 131

Query: 125 LDQMKELNTLGMDS 138
            + M +L  L +  
Sbjct: 132 FEDMAQLQKLYLSQ 145

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 19/163 (11%)

Query: 3   RLSTQQILKDNKTCDPNSIKSL-SLTH--------KALSDVSCLTDFNNLERLDLSSNNL 53
           R  +   LK + T   +   +   +          +     + L     L  LD   N +
Sbjct: 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV 585

Query: 54  TSLEGLKHCVNLKWLSLVQNKLQSL-KGI-EGLSKPTVLNVGKNKLRSMDDVTSV---VS 108
             LE     V L  L L  N+++ + +       +   L    NKL+ + ++ +      
Sbjct: 586 RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYV 645

Query: 109 LRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGN 151
           + ++  + N+I S       + ++    D    N + + L  N
Sbjct: 646 MGSVDFSYNKIGSE-----GRNISCSMDDYKGINASTVTLSYN 683

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.8 bits (137), Expect = 6e-09
 Identities = 28/177 (15%), Positives = 55/177 (31%), Gaps = 32/177 (18%)

Query: 8   QILKDNKTCDPNSIKSLSLTHKALSDV--SCLTDFNNLERLDLSSNNLTSL--------- 56
            I          +  +++L++  +           + +  + LS+N +TS+         
Sbjct: 662 NISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKD 721

Query: 57  EGLKHCVNLKWLSLVQNKLQSL---KGIEGLSKPTVLNVGKNKLRSM-DDVTSVVSLRAL 112
              K+   L  + L  NKL SL        L   + ++V  N   S      +   L+A 
Sbjct: 722 GNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAF 781

Query: 113 ILNDNEIVS-----------ICKLDQMKEL----NTLGM--DSYFFNLNNLNLQGNP 152
            +                  I     + +L    N +    +     L  L++  NP
Sbjct: 782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIADNP 838

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 24/187 (12%), Positives = 65/187 (34%), Gaps = 35/187 (18%)

Query: 19  NSIKSLSLTH---KALSDVSCLTDFNNLERLDLSSNNLTSLE-------GLKHCVNLKWL 68
           + ++ L  +H   K + ++        +  +D S N + S              +N   +
Sbjct: 619 DQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678

Query: 69  SLVQNKLQSL--KGIEGLSKPTVLNVGKNKLRSM---------DDVTSVVSLRALILNDN 117
           +L  N++Q    +     S  + + +  N + S+          +  +   L  + L  N
Sbjct: 679 TLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN 738

Query: 118 EIVSI---CKLDQMKELNTL--------GMDSYFFNLNNL---NLQGNPVAEYDKLAKKV 163
           ++ S+    +   +  L+ +           +   N + L    ++    AE +++ ++ 
Sbjct: 739 KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQW 798

Query: 164 KTLLPNL 170
            T +   
Sbjct: 799 PTGITTC 805

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.6 bits (121), Expect = 7e-07
 Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 13/115 (11%)

Query: 20  SIKSLSLTH---KALSDVSCLTDFNNLERLDLSSNNLTSL-EGLKHCVNLKWLSLVQNKL 75
            + ++ L      +LSD    T    L  +D+S N  +S      +   LK   +   + 
Sbjct: 729 LLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRD 788

Query: 76  QSL--------KGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSI 122
                       GI        L +G N +R +D+  +   L  L + DN  +SI
Sbjct: 789 AEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT-PQLYILDIADNPNISI 842

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.6 bits (113), Expect = 6e-06
 Identities = 22/206 (10%), Positives = 55/206 (26%), Gaps = 55/206 (26%)

Query: 1   MTRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVS--------CLTDFNNLERLDLSSNN 52
           ++ L    I ++ +         +SL    + +++         +     L+ +  +++ 
Sbjct: 400 LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSP 459

Query: 53  LTSL---------------------EGLKHCVNLKWLSLVQNKLQSL--KGIEGLSKPTV 89
            T                           +  +L  + L      +     +  L +   
Sbjct: 460 FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519

Query: 90  LNVGKNKLRSMDDVTSVV-----------SLRALILNDNEIVSI---CKLDQMKELNTLG 135
           LN+  N+  S   + +              ++   +  N +        L +M +L  L 
Sbjct: 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLD 579

Query: 136 MD----------SYFFNLNNLNLQGN 151
                            L +L L  N
Sbjct: 580 CVHNKVRHLEAFGTNVKLTDLKLDYN 605

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 27/124 (21%), Positives = 48/124 (38%), Gaps = 12/124 (9%)

Query: 37  LTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNK 96
                 L  LD  ++++T + G++    L  L    N + +L  +   +  T L    NK
Sbjct: 38  EEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNK 96

Query: 97  LRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD---------SYFFNLNNLN 147
           L ++ DVT +  L  L  + N++  +  + Q   L  L            S+   L  L+
Sbjct: 97  LTNL-DVTPLTKLTYLNCDTNKLTKL-DVSQNPLLTYLNCARNTLTEIDVSHNTQLTELD 154

Query: 148 LQGN 151
              N
Sbjct: 155 CHLN 158

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 57.4 bits (139), Expect = 3e-09
 Identities = 28/202 (13%), Positives = 55/202 (27%), Gaps = 9/202 (4%)

Query: 10  LKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLS 69
           L +      + + +L      L ++  LT    L               + H   L  L 
Sbjct: 245 LTELDVSTLSKLTTLHCIQTDLLEID-LTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLD 303

Query: 70  LVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMK 129
                +  L  +    K   L +   +L  + DV+    L++L   +  I     + ++ 
Sbjct: 304 CQAAGITELD-LSQNPKLVYLYLNNTELTEL-DVSHNTKLKSLSCVNAHIQDFSSVGKIP 361

Query: 130 ELNTLGMDSYFF------NLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPIDRITK 183
            LN                L N +L      +          + P       +  + IT 
Sbjct: 362 ALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITW 421

Query: 184 NEKDNIVDKVNDSSNNSDDTIK 205
                    V  +  + +  I 
Sbjct: 422 ENLSTDNPAVTYTFTSENGAIV 443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 28/151 (18%), Positives = 53/151 (35%), Gaps = 13/151 (8%)

Query: 20  SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK 79
            +  L  +   L+++  +T    L   D S N LT L+ +     L  L  +Q  L  + 
Sbjct: 213 QLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELD-VSTLSKLTTLHCIQTDLLEID 270

Query: 80  GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD-- 137
            +   ++         +     DVT    L  L      I  +  L Q  +L  L ++  
Sbjct: 271 -LTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITEL-DLSQNPKLVYLYLNNT 328

Query: 138 -------SYFFNLNNLNLQGNPVAEYDKLAK 161
                  S+   L +L+     + ++  + K
Sbjct: 329 ELTELDVSHNTKLKSLSCVNAHIQDFSSVGK 359

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 23/143 (16%), Positives = 45/143 (31%), Gaps = 13/143 (9%)

Query: 19  NSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSL 78
             +  L+     L+++  ++    L  LD   N   +   +     L  L    NK+  L
Sbjct: 127 PLLTYLNCARNTLTEID-VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL 185

Query: 79  KGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD- 137
             +        LN   N +  + D+   + L  L  + N++  I  +  + +L       
Sbjct: 186 D-VSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSV 242

Query: 138 --------SYFFNLNNLNLQGNP 152
                   S    L  L+     
Sbjct: 243 NPLTELDVSTLSKLTTLHCIQTD 265

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 29/161 (18%), Positives = 57/161 (35%), Gaps = 24/161 (14%)

Query: 13  NKTCDPNSI-KSLSLTHKALSDV-SCLTDFNNLERLDLSSNNLTSL--EGLKHCVNLKWL 68
           ++ C    + K+ +  +  L+++   L   N+ E L+ S N L ++        +NL +L
Sbjct: 5   DQKCIEKEVNKTYNCENLGLNEIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFL 62

Query: 69  SLVQNKLQSL--KGIEGLSKPTVLNVGKNKLRSMDDVT--SVVSLRALILNDNEIVSI-- 122
            L + ++  +     +   +   L +  N L  M +       +L+ L      I SI  
Sbjct: 63  DLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDF 122

Query: 123 ---CKLDQMKELN---------TLGMDSYFFNLNNLNLQGN 151
                   ++ L           L        L  L+ Q N
Sbjct: 123 IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN 163

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 36/160 (22%), Positives = 66/160 (41%), Gaps = 24/160 (15%)

Query: 16  CDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE-GLKHCVNLKWLSLVQ 72
               S++S++L      ++S      F+ L+ LDL++ +L+ L  GL     LK L L  
Sbjct: 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSA 310

Query: 73  NKLQSLKG--IEGLSKPTVLNVGKNKLRSM---DDVTSVVSLRALILNDNEIVSI----C 123
           NK ++L           T L++  N  R       + ++ +LR L L+ ++I +      
Sbjct: 311 NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370

Query: 124 KLDQMKELNTL--------GMDSYFF----NLNNLNLQGN 151
           +L  +  L +L         + +  F     L  L+L   
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.9 bits (138), Expect = 6e-09
 Identities = 31/158 (19%), Positives = 57/158 (36%), Gaps = 25/158 (15%)

Query: 20  SIKSLSLTH---KALSDVSCLTDFNNLERLDLSSNNLTSL--EGLKHCVNLKWLSLVQNK 74
            ++ L L     K     S   + + L+ L+LS + L     +       L+ L+L  N 
Sbjct: 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460

Query: 75  LQSLKGI-----EGLSKPTVLNVGKNKLRSMDDVT--SVVSLRALILNDNEIVSI--CKL 125
                       + L +  +L +    L S+D     S+  +  + L+ N + S     L
Sbjct: 461 FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL 520

Query: 126 DQMKEL------NTLGM--DSYFFNLNNL---NLQGNP 152
             +K +      N + +   S    L+     NL+ NP
Sbjct: 521 SHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNP 558

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.6 bits (137), Expect = 6e-09
 Identities = 31/159 (19%), Positives = 60/159 (37%), Gaps = 27/159 (16%)

Query: 19  NSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG---LKHCVNLKWLSLVQN 73
           + ++SL+L++     +      +   LE LDL+   L   +     ++   LK L+L  +
Sbjct: 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435

Query: 74  KLQSLKG--IEGLSKPTVLNVGKNKLRSMDDVTSVV-----SLRALILNDNEIVSI---- 122
            L        +GL     LN+  N     +   +        L  L+L+  ++ SI    
Sbjct: 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA 495

Query: 123 -CKLDQMKELN-------TLGMDSYFFNLNN--LNLQGN 151
              L  M  ++       +  +++   +L    LNL  N
Sbjct: 496 FTSLKMMNHVDLSHNRLTSSSIEA-LSHLKGIYLNLASN 533

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 22/117 (18%), Positives = 40/117 (34%), Gaps = 10/117 (8%)

Query: 19  NSIKSLSLTHKALSDV-----SCLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLV 71
            +++ L+L             + L     LE L LS  +L+S++         +  + L 
Sbjct: 449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLS 508

Query: 72  QNKLQSL-KGIEGLSKPTVLNVGKNKLRSMDDVT--SVVSLRALILNDNEIVSICKL 125
            N+L S         K   LN+  N +  +       +   R + L  N +   C  
Sbjct: 509 HNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 25/143 (17%), Positives = 49/143 (34%), Gaps = 19/143 (13%)

Query: 20  SIKSLSLTHKALSDV--SCLTDFNNLERLDLSSNNLTSL--EGLKHCVNLKWLSLV--QN 73
           +++SL L    +S +          L+ LD  +N +  L  E +        LSL    N
Sbjct: 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189

Query: 74  KLQSL-KGIEGLSKPTVLNVGKNKLRSM----DDVTSVVSLRALILNDNEIVSICKLDQM 128
            +  +  G    +    LN G  +   +       +++ SL      D +   I      
Sbjct: 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI------ 243

Query: 129 KELNTLGMDSYFFNLNNLNLQGN 151
                +       ++ ++NLQ +
Sbjct: 244 --SPAVFEGLCEMSVESINLQKH 264

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 37/159 (23%), Positives = 63/159 (39%), Gaps = 24/159 (15%)

Query: 18  PNSIKSLSLTHKALSDV--SCLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQN 73
           P +I  L+LTH  L  +  +  T ++ L  LD+  N ++ LE    +    LK L+L  N
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83

Query: 74  KLQSL--KGIEGLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDNEIVSI-----CK 124
           +L  L  K     +  T L++  N ++ + +       +L  L L+ N + S       +
Sbjct: 84  ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143

Query: 125 LDQMKELN------TLGMDSYFFNLNN-----LNLQGNP 152
           L+ ++EL                   N     L L  N 
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.6 bits (145), Expect = 8e-10
 Identities = 39/166 (23%), Positives = 67/166 (40%), Gaps = 33/166 (19%)

Query: 20  SIKSLSLTHKALSDV----SCLTDFNNLERLDLSSNNLTSL--EGLKHCVNLKWLSLVQN 73
           S++ L L   AL +V    S      NL  LDLS+NN+ ++  + L+    L+ L L  N
Sbjct: 455 SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN 514

Query: 74  KLQSL----------KGIEGLSKPTVLNVGKNKLRSMDDVT--SVVSLRALILNDNEIVS 121
            L  L            ++GLS   +LN+  N    +       +  L+ + L  N + +
Sbjct: 515 NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT 574

Query: 122 ICK--LDQMKELNTL--------GMDSYFF-----NLNNLNLQGNP 152
           +     +    L +L         ++   F     NL  L+++ NP
Sbjct: 575 LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP 620

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 34/158 (21%), Positives = 59/158 (37%), Gaps = 24/158 (15%)

Query: 16  CDPNSIKSLSLTHKALSDV--SCLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLV 71
               ++  L L   ++  +  +      NL  LDLS N L+S +        NL+ L L 
Sbjct: 94  AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS 153

Query: 72  QNKLQSLK----GIEGLSKPTVLNVGKNKLRS--MDDVTSVVSLRALILNDNEIV----- 120
            NK+Q+LK     I   S    L +  N+++        ++  L  L LN+ ++      
Sbjct: 154 NNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE 213

Query: 121 SICKLDQMKELNTLGM---------DSYFFNLNNLNLQ 149
            +C       +  L +         ++ F  L   NL 
Sbjct: 214 KLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT 251

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.5 bits (137), Expect = 7e-09
 Identities = 29/148 (19%), Positives = 55/148 (37%), Gaps = 21/148 (14%)

Query: 19  NSIKSLSLTHKALSDV---SCLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQN 73
             ++ L L    +             N+  + LS N    L         +L+ L L + 
Sbjct: 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV 464

Query: 74  KLQSLKGI----EGLSKPTVLNVGKNKLRSMDDVT--SVVSLRALILNDNEIVSICKLDQ 127
            L+++       + L   T+L++  N + +++D     +  L  L L  N       L +
Sbjct: 465 ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN------NLAR 518

Query: 128 MKELNTLGMDSYFF----NLNNLNLQGN 151
           + +    G   YF     +L+ LNL+ N
Sbjct: 519 LWKHANPGGPIYFLKGLSHLHILNLESN 546

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.2 bits (131), Expect = 4e-08
 Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 7/112 (6%)

Query: 19  NSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSL--EGLKHCVNLKWLSLVQNKLQ 76
           N++  L         +  L   ++L  L+L SN    +  E  K    LK + L  N L 
Sbjct: 514 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573

Query: 77  SLKG--IEGLSKPTVLNVGKNKLRSMDDVT---SVVSLRALILNDNEIVSIC 123
           +L             LN+ KN + S++      +  +L  L +  N     C
Sbjct: 574 TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 26/147 (17%), Positives = 52/147 (35%), Gaps = 18/147 (12%)

Query: 20  SIKSLSLTHKALSDV--SCLTDFNNLERLDLSSNNLT-----SLEGLKHCVNLKWLSLVQ 72
           S+K L L+   + +    C      L  L L++  L       L       +++ LSL  
Sbjct: 172 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 231

Query: 73  NKLQSL--KGIEGLSKP--TVLNVGKNKLRSMDDVT--SVVSLRALILNDNEIVSI--CK 124
           ++L +       GL     T+L++  N L  + + +   +  L    L  N I  +    
Sbjct: 232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS 291

Query: 125 LDQMKELNTLGMDSYFFNLNNLNLQGN 151
           L  +  +  L +     +    ++   
Sbjct: 292 LHGLFNVRYLNLKR---SFTKQSISLA 315

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.4 bits (121), Expect = 7e-07
 Identities = 34/161 (21%), Positives = 61/161 (37%), Gaps = 29/161 (18%)

Query: 19  NSIKSLSLTHKALSDV--SCLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNK 74
            S    S++  +L  +          LE L++  N++  ++       +NLK+LSL  + 
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364

Query: 75  LQSLKGIE-------GLSKPTVLNVGKNKLRSMDDVT--SVVSLRALILNDNEIV----- 120
             SL+ +          S   +LN+ KNK+  ++      +  L  L L  NEI      
Sbjct: 365 T-SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423

Query: 121 -SICKLDQMKELN-----TLGMDSYFF----NLNNLNLQGN 151
                L+ + E+       L +    F    +L  L L+  
Sbjct: 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV 464

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 27/172 (15%), Positives = 56/172 (32%), Gaps = 35/172 (20%)

Query: 16  CDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSN-----------NLTSLEGLKHC 62
               ++  L L++  L+ V          LE   L  N            L ++  L   
Sbjct: 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304

Query: 63  VNLKWLSLVQNKLQSLKG--IEGLSKPTVLNVGKNKLRSMDDVT--SVVSLRALILNDN- 117
            +    S+    L  +     + L     LN+  N +  +       +++L+ L L+++ 
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364

Query: 118 -EIVSICKLD----QMKELNTL--------GMDSYFF----NLNNLNLQGNP 152
             + ++            L+ L         ++S  F    +L  L+L  N 
Sbjct: 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.9 bits (112), Expect = 9e-06
 Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 21/129 (16%)

Query: 42  NLERLDLSSNNLTSL-EGLKHCVNLKWLSLVQNKLQSLKG--IEGLSKPTVLNVGKNKLR 98
           + E  D S   LT + + L    N+  L+L  N+L+ L        S+ T L+VG N + 
Sbjct: 5   SHEVADCSHLKLTQVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 99  SMDDVT--SVVSLRALILNDNEIVSI-----CKLDQMKEL----NTLGM--DSYFFNLNN 145
            ++      +  L+ L L  NE+  +          + EL    N++    ++ F    N
Sbjct: 63  KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122

Query: 146 L---NLQGN 151
           L   +L  N
Sbjct: 123 LITLDLSHN 131

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.4 bits (147), Expect = 4e-10
 Identities = 35/154 (22%), Positives = 68/154 (44%), Gaps = 24/154 (15%)

Query: 20  SIKSLSLTHKALSDV-SCLTDFNNLERLDLSSNNLTSL--EGLKHCVNLKWLSLVQNKLQ 76
              +     + LS V   +   ++ + +DLS N L  L      +   L+WL L + +++
Sbjct: 12  PNITYQCMDQKLSKVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE 69

Query: 77  SL--KGIEGLSKPTVLNVGKNKLRSMDDVT--SVVSLRALILNDNEIVSI-----CKLDQ 127
           ++  K   GL   + L +  N ++S    +   + SL  L+  + ++ S+      +L  
Sbjct: 70  TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129

Query: 128 MKELN-------TLGMDSYFFNLNNL---NLQGN 151
           +K+LN       +  + +YF NL NL   +L  N
Sbjct: 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 24/116 (20%), Positives = 43/116 (37%), Gaps = 9/116 (7%)

Query: 19  NSIKSLSLTH---KALSDVSCLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQN 73
            S+ +L +     K  +  +   +  NL  LDLS   L  +          L+ L++  N
Sbjct: 448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507

Query: 74  KLQSL--KGIEGLSKPTVLNVGKNKLRSMDDVT--SVVSLRALILNDNEIVSICKL 125
            L  L       L   + L+   N++ +   +      SL    L +N +  IC+ 
Sbjct: 508 NLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEH 563

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 26/149 (17%), Positives = 53/149 (35%), Gaps = 18/149 (12%)

Query: 20  SIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQS 77
           +I    LT+               N+  + L+  ++  LE +      + LS+++ +L+ 
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQ 321

Query: 78  LKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSI-------CKLDQMKE 130
              +  L     L +  NK        ++ SL  L L+ N +             + ++ 
Sbjct: 322 FPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRH 380

Query: 131 L----NTLGMDSYFF----NLNNLNLQGN 151
           L    N   + S  F     L +L+ Q +
Sbjct: 381 LDLSFNGAIIMSANFMGLEELQHLDFQHS 409

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 36/165 (21%), Positives = 54/165 (32%), Gaps = 23/165 (13%)

Query: 10  LKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLE----GLKHCVNL 65
           LK   T D   +KSL+LT    S         +L  LDLS N L+             +L
Sbjct: 319 LKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSL 378

Query: 66  KWLSLVQNKLQSLKG-IEGLSKPTVLNVGKNKLRSMDDV---TSVVSLRALILNDNEIVS 121
           + L L  N    +     GL +   L+   + L+ + +     S+  L  L ++      
Sbjct: 379 RHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438

Query: 122 I-----CKLDQMKELN------TLGMDSYFF----NLNNLNLQGN 151
                   L  +  L            S  F    NL  L+L   
Sbjct: 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 23/160 (14%), Positives = 47/160 (29%), Gaps = 27/160 (16%)

Query: 18  PNSIKSLSLTHKALSDV--SCLTDFNNLERLDLSSNNLTSL---EGLKHCVNLKWLSLVQ 72
           P    SL ++   +  +          L  L L  N  +S      L++   L    L+ 
Sbjct: 180 PQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL 238

Query: 73  NKLQSLKGIEGLSKPT----------VLNVGKNKLRSMDDVT--SVVSLRALILNDNEIV 120
            + +  + +E                   +      S D V    + ++ A+ L    I 
Sbjct: 239 GEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK 298

Query: 121 SICKLDQMKELNTLGMDS---------YFFNLNNLNLQGN 151
            +  + +  +  +L +               L +L L  N
Sbjct: 299 YLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMN 338

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 60.0 bits (145), Expect = 6e-10
 Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 11/117 (9%)

Query: 18  PNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQS 77
           P  I  L +T  AL  +  L    +LE LD   N L++L   +   +LK L +  N+L  
Sbjct: 79  PPQITVLEITQNALISLPEL--PASLEYLDACDNRLSTL--PELPASLKHLDVDNNQLTM 134

Query: 78  L-KGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSI-CKLDQMKELN 132
           L +    L     +N   N+L  + +     SL  L + +N++  +    + ++ L+
Sbjct: 135 LPELPALL---EYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPELPESLEALD 186

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 56.5 bits (136), Expect = 7e-09
 Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 19/123 (15%)

Query: 40  FNNLERLDLSSNNLTSL-EGLKHCVNLKWLSLVQNKLQSL-KGIEGLSKPTVLNVGKNKL 97
            N    L L+  NL+SL + L     +  L + QN L SL +    L     L+   N+L
Sbjct: 58  INQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLPELPASL---EYLDACDNRL 112

Query: 98  RSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD--------SYFFNLNNLNLQ 149
            ++ +     SL+ L +++N++  +   +    L  +  D            +L  L+++
Sbjct: 113 STLPE--LPASLKHLDVDNNQLTMLP--ELPALLEYINADNNQLTMLPELPTSLEVLSVR 168

Query: 150 GNP 152
            N 
Sbjct: 169 NNQ 171

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.8 bits (116), Expect = 2e-06
 Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 12/100 (12%)

Query: 10  LKDNK-TCDPNSI---KSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSL-EGLKHCVN 64
             +N+ T  P      + LS+ +  L+ +  L    +LE LD+S+N L SL        +
Sbjct: 147 ADNNQLTMLPELPTSLEVLSVRNNQLTFLPEL--PESLEALDVSTNLLESLPAVPVRNHH 204

Query: 65  LK----WLSLVQNKLQSL-KGIEGLSKPTVLNVGKNKLRS 99
            +    +    +N++  + + I  L     + +  N L S
Sbjct: 205 SEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS 244

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 16/132 (12%)

Query: 34  VSCLTDFNNLERL--DLSSNNLTSL-----EGLKHCVNLKWLSLVQNKLQSLKGIEGLSK 86
           +S +   NN   L  +   N ++                      +N+  SL     +++
Sbjct: 1   MSIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ 60

Query: 87  PTVLNVGKNKLRSM-DDVTSVVSLRALILNDNEIVSI-CKLDQMKELNTLGMD-----SY 139
            + L + +  L S+ D++     +  L +  N ++S+      ++ L+            
Sbjct: 61  FSELQLNRLNLSSLPDNLPP--QITVLEITQNALISLPELPASLEYLDACDNRLSTLPEL 118

Query: 140 FFNLNNLNLQGN 151
             +L +L++  N
Sbjct: 119 PASLKHLDVDNN 130

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 59.2 bits (144), Expect = 6e-10
 Identities = 30/154 (19%), Positives = 56/154 (36%), Gaps = 24/154 (15%)

Query: 20  SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQS 77
            ++ L L+   L ++        L+ L +  N +T +          +  + L  N L+S
Sbjct: 101 KLERLYLSKNQLKELPEKM-PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159

Query: 78  LKGIE-----GLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSI--CKLDQMKE 130
             GIE     G+ K + + +    + ++       SL  L L+ N+I  +    L  +  
Sbjct: 160 S-GIENGAFQGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDGNKITKVDAASLKGLNN 217

Query: 131 LNTLGMDS---------YFFNLNN---LNLQGNP 152
           L  LG+              N  +   L+L  N 
Sbjct: 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 52.3 bits (126), Expect = 9e-08
 Identities = 29/153 (18%), Positives = 58/153 (37%), Gaps = 20/153 (13%)

Query: 18  PNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQN 73
           P     L L +  ++++      +  NL  L L +N ++ +        V L+ L L +N
Sbjct: 51  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110

Query: 74  KLQSLKGIEGLSKPTVLNVGKNKLRSMDDVT--SVVSLRALILNDNEIVSIC----KLDQ 127
           +L+ L   +       L V +N++  +       +  +  + L  N + S          
Sbjct: 111 QLKELPE-KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169

Query: 128 MKELNTLGM---------DSYFFNLNNLNLQGN 151
           MK+L+ + +              +L  L+L GN
Sbjct: 170 MKKLSYIRIADTNITTIPQGLPPSLTELHLDGN 202

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 20/114 (17%), Positives = 46/114 (40%), Gaps = 15/114 (13%)

Query: 19  NSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSL-EGLKHCVNLKWLSLVQNKL 75
           N++  L L+  ++S V    L +  +L  L L++N L  +  GL     ++ + L  N +
Sbjct: 216 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI 275

Query: 76  QSLKG--------IEGLSKPTVLNVGKNKLR--SMDDVT--SVVSLRALILNDN 117
            ++              +  + +++  N ++   +   T   V    A+ L + 
Sbjct: 276 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.8 bits (143), Expect = 7e-10
 Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 18/129 (13%)

Query: 22  KSLSLTHKALSDV-SCLTDFNNLERLDLSSNNLTSL-EGLKHCVNLKWLSLVQNKLQSL- 78
            +L L    L          ++L+ + + +  L  L + ++    L+ L+L +N L++L 
Sbjct: 84  VALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALP 143

Query: 79  KGIEGLSKPTVLNV-GKNKLRS----------MDDVTSVVSLRALILNDNEIV----SIC 123
             I  L++   L++    +L              +   +V+L++L L    I     SI 
Sbjct: 144 ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIA 203

Query: 124 KLDQMKELN 132
            L  +K L 
Sbjct: 204 NLQNLKSLK 212

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.4 bits (142), Expect = 1e-09
 Identities = 23/164 (14%), Positives = 53/164 (32%), Gaps = 15/164 (9%)

Query: 1   MTRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDF---------NNLERLDLSSN 51
           +++         N+        + +           L                 L+L S 
Sbjct: 32  LSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV 91

Query: 52  NLTSL-EGLKHCVNLKWLSLVQNKLQSL-KGIEGLSKPTVLNVGKNKLRSM-DDVTSVVS 108
            L    +      +L+ +++    L  L   ++  +    L + +N LR++   + S+  
Sbjct: 92  PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNR 151

Query: 109 LRALILND-NEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGN 151
           LR L +    E+  +   + +   +  G      NL +L L+  
Sbjct: 152 LRELSIRACPELTELP--EPLASTDASGEHQGLVNLQSLRLEWT 193

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 52.6 bits (127), Expect = 8e-08
 Identities = 26/123 (21%), Positives = 41/123 (33%), Gaps = 14/123 (11%)

Query: 18  PNSIKSL-SLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQ 76
           P SI SL  L    LS    +     L  L     +  +    +  VNL+ L L    ++
Sbjct: 143 PASIASLNRLRE--LS----IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR 196

Query: 77  SL-KGIEGLSKPTVLNVGKNKLRSM-DDVTSVVSLRALILND-NEIV----SICKLDQMK 129
           SL   I  L     L +  + L ++   +  +  L  L L     +            +K
Sbjct: 197 SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256

Query: 130 ELN 132
            L 
Sbjct: 257 RLI 259

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 59.0 bits (143), Expect = 8e-10
 Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 27/138 (19%)

Query: 42  NLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSLKGI--EGLSKPTVLNVGKNKL 97
            LE L++ +++L S E   LK   N+  L L   +   L  I  +  S    L +    L
Sbjct: 175 FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234

Query: 98  RSM----------DDVTSVVSLRALILNDNEIVSICKL-DQMKELNTLGMDS-------- 138
            +           + +    + R + + D  +  + KL +Q+  L  L            
Sbjct: 235 DTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD 294

Query: 139 ----YFFNLNNLNLQGNP 152
                  +L  + L  NP
Sbjct: 295 GIFDRLTSLQKIWLHTNP 312

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 34/159 (21%), Positives = 67/159 (42%), Gaps = 24/159 (15%)

Query: 18  PNSIKSLSLTHKALSDV--SCLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQN 73
             ++KSL L++  ++ +  S L    NL+ L L+SN + ++E        +L+ L L  N
Sbjct: 51  TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110

Query: 74  KLQSL-KGI-EGLSKPTVLNVGKNKLRSMDDVT---SVVSLRALILNDNE-IVSICK--L 125
            L +L     + LS  T LN+  N  +++ + +    +  L+ L + + +    I +   
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 126 DQMKELNTLGMD------------SYFFNLNNLNLQGNP 152
             +  L  L +D                N+++L L    
Sbjct: 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 33/179 (18%), Positives = 68/179 (37%), Gaps = 26/179 (14%)

Query: 22  KSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQS 77
           ++L LT   ++ +     +   +LE LDLS N L++L     K   +L +L+L+ N  ++
Sbjct: 79  QALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT 138

Query: 78  L------KGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICK--LDQMK 129
           L        +  L    V N+         D   +  L  L ++ +++ S     L  ++
Sbjct: 139 LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ 198

Query: 130 ELNTLGMDS--------YFF----NLNNLNLQGNPVAE--YDKLAKKVKTLLPNLCIFN 174
            ++ L +           F     ++  L L+   +    + +L+      L     F 
Sbjct: 199 NVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 13/115 (11%)

Query: 18  PNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQN 73
           P ++  L L H  +  +    L  ++ L RL L  N +  +E   L     L+ L L  N
Sbjct: 192 PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN 251

Query: 74  KLQSL-KGIEGLSKPTVLNVGKNKLRS--------MDDVTSVVSLRALILNDNEI 119
           KL  +  G+  L    V+ +  N +          +           + L +N +
Sbjct: 252 KLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 55.8 bits (135), Expect = 7e-09
 Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 21/152 (13%)

Query: 20  SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQS 77
            ++ L ++   L ++      ++L  L +  N +  +         N+  + +  N L++
Sbjct: 103 KLQKLYISKNHLVEIPPNL-PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 161

Query: 78  L---KGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICK--LDQMKELN 132
                G     K   L + + KL  +       +L  L L+ N+I +I    L +  +L 
Sbjct: 162 SGFEPGAFDGLKLNYLRISEAKLTGIPK-DLPETLNELHLDHNKIQAIELEDLLRYSKLY 220

Query: 133 TLGMDS---------YFFNLNN---LNLQGNP 152
            LG+               L     L+L  N 
Sbjct: 221 RLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 31/159 (19%), Positives = 62/159 (38%), Gaps = 31/159 (19%)

Query: 19  NSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSL 78
           N +++      A   +        L  L +S   LT +        L  L L  NK+Q++
Sbjct: 157 NPLENSGFEPGAFDGL-------KLNYLRISEAKLTGIPK-DLPETLNELHLDHNKIQAI 208

Query: 79  KG--IEGLSKPTVLNVGKNKLRSMDDVT--SVVSLRALILNDNEIVSI----CKLDQMKE 130
           +   +   SK   L +G N++R +++ +   + +LR L L++N++  +      L  ++ 
Sbjct: 209 ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQV 268

Query: 131 LN---------------TLGMDSYFFNLNNLNLQGNPVA 154
           +                 +G        N ++L  NPV 
Sbjct: 269 VYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 25/164 (15%), Positives = 49/164 (29%), Gaps = 43/164 (26%)

Query: 18  PNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQN 73
                 L L +  +S++         +L  L L +N ++ +          L+ L + +N
Sbjct: 53  SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112

Query: 74  KLQSL-----KGIE------------------GLSKPTVLNVGKNKLRSM---DDVTSVV 107
            L  +       +                   GL     + +G N L +          +
Sbjct: 113 HLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172

Query: 108 SLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGN 151
            L  L +++ ++  I K                  LN L+L  N
Sbjct: 173 KLNYLRISEAKLTGIPK-------------DLPETLNELHLDHN 203

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 19/140 (13%), Positives = 44/140 (31%), Gaps = 15/140 (10%)

Query: 19  NSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSL---EGLKHCVNLKWLSLVQNKL 75
           N   S          ++       ++ + +  NNL +      L+    L  L  + N+L
Sbjct: 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQL 342

Query: 76  QSL-KGIEGLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDNEIVSICKLDQMKELN 132
           +          K   LN+  N++  +          +  L    N++  I  +   K ++
Sbjct: 343 EGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVS 402

Query: 133 TLGMDSYFFNLNNLNLQGNP 152
                     ++ ++   N 
Sbjct: 403 ---------VMSAIDFSYNE 413

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.9 bits (130), Expect = 5e-08
 Identities = 26/166 (15%), Positives = 57/166 (34%), Gaps = 34/166 (20%)

Query: 20  SIKSLSLTHKALSDV--SCLTDFNNLERLDLSSNNLTSL---------EGLKHCVNLKWL 68
           ++ S++L++  +S       +  + L  ++L  N LT +         E  K+   L  +
Sbjct: 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSI 493

Query: 69  SLVQNKLQSL---KGIEGLSKPTVLNVGKNKLRSM-DDVTSVVSLRALILNDNEIVS--- 121
            L  NKL  L        L     +++  N          +  +L+   + +        
Sbjct: 494 DLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNR 553

Query: 122 --------ICKLDQMKELNTLGM-------DSYFFNLNNLNLQGNP 152
                   I     + +L  +G        +    N++ L+++ NP
Sbjct: 554 TLREWPEGITLCPSLTQLQ-IGSNDIRKVNEKITPNISVLDIKDNP 598

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 25/176 (14%), Positives = 59/176 (33%), Gaps = 43/176 (24%)

Query: 19  NSIKSLSLTH---KALSDVSCLTDFNNLERLDLSSNNLTSL---------EGLKHCVNLK 66
             +++LS  H   K + ++      + +  +D S N + S+               +N+ 
Sbjct: 377 EQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436

Query: 67  WLSLVQNKLQSL--KGIEGLSKPTVLNVGKNKLRSM---------DDVTSVVSLRALILN 115
            ++L  N++     +     S  + +N+  N L  +         ++  +   L ++ L 
Sbjct: 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR 496

Query: 116 DNEIVSI------CKLDQMKELN-----------TLGMDS---YFFNLNNLNLQGN 151
            N++  +        L  +  ++                S    F   N  + QGN
Sbjct: 497 FNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGN 552

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 21/161 (13%), Positives = 54/161 (33%), Gaps = 25/161 (15%)

Query: 15  TCDPNS-IKSLSLTHKALSDV--SCLTDFNNLERLDLSSNNLTS------LEGLKHCVNL 65
           + + N  +  LSL     S      +     LE L L S+           +G+   ++ 
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 66  KWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEI------ 119
           +    ++   Q    ++   +    ++ K+ + S     S+     + L D +I      
Sbjct: 136 EQKQKMRMHYQKTF-VDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN 194

Query: 120 -----VSICKLDQMKEL----NTLGMDSYFFNLNNLNLQGN 151
                 ++ +L ++++     +    ++      N N +  
Sbjct: 195 ITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA 235

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 14/161 (8%), Positives = 44/161 (27%), Gaps = 13/161 (8%)

Query: 1   MTRLSTQQILKDNKTCDPNSIKSLSLTHKALSDV--------SCLTDFNNLERLDLSSNN 52
            + L    I  D +         ++L    +  +          +     L +  + ++ 
Sbjct: 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSP 217

Query: 53  LTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSM--DDVTSVVSLR 110
             +    +     +     Q         + L   T + V      +     + ++  ++
Sbjct: 218 FVAENICEAW-ENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276

Query: 111 ALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGN 151
            + +  N  +S  +L    +   L        +  + +  N
Sbjct: 277 LINVACNRGISGEQLK--DDWQALADAPVGEKIQIIYIGYN 315

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 55.0 bits (133), Expect = 4e-09
 Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 29/122 (23%)

Query: 44  ERLDLSSNNLTSLEG---LKHCVNLKWLSLVQNKLQSL-KGI-EGLSKPTVLNVGKNKLR 98
             L L+ N L  +          +L  L L +N+L  +     EG S    L +G+NK++
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 99  SM-----DDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNL---NLQG 150
            +       +     L+ L L DN+I  +             M   F +LN+L   NL  
Sbjct: 92  EISNKMFLGLHQ---LKTLNLYDNQISCV-------------MPGSFEHLNSLTSLNLAS 135

Query: 151 NP 152
           NP
Sbjct: 136 NP 137

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 15/112 (13%)

Query: 18  PNSIKSLSLTHKALSDVSCLTDFN---NLERLDLSSNNLTSLE-----GLKHCVNLKWLS 69
           P     L L    L  +S    F    +L +L+L  N LT +E     G     +++ L 
Sbjct: 28  PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA---SHIQELQ 84

Query: 70  LVQNKLQSL-KGI-EGLSKPTVLNVGKNKLRSMDDVT--SVVSLRALILNDN 117
           L +NK++ +   +  GL +   LN+  N++  +   +   + SL +L L  N
Sbjct: 85  LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 56.4 bits (136), Expect = 8e-09
 Identities = 31/151 (20%), Positives = 60/151 (39%), Gaps = 20/151 (13%)

Query: 21  IKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSL--EGLKHCVNLKWLSLVQNKLQSL 78
           IK+ +++   +  + C +  +    LD S+N LT    E   H   L+ L L  N+L+ L
Sbjct: 304 IKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL 363

Query: 79  KGIEG----LSKPTVLNVGKNKLRSMDDV---TSVVSLRALILNDNEIVSI---CKLDQM 128
             I      +     L++ +N +   +     +   SL +L ++ N +      C   ++
Sbjct: 364 SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRI 423

Query: 129 KELN-------TLGMDSYFF-NLNNLNLQGN 151
           K L+       ++         L  LN+  N
Sbjct: 424 KVLDLHSNKIKSIPKQVVKLEALQELNVASN 454

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 31/171 (18%), Positives = 62/171 (36%), Gaps = 14/171 (8%)

Query: 42  NLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSL--KGIEGLSKPTVLNVGKNKL 97
               L++S N ++ L    +     L+ L +  N++Q L     +   +   L++  NKL
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81

Query: 98  RSMDDVTSVVSLRALILNDNEIVSICK---LDQMKELNTLGMDS------YFFNLNNLNL 148
             +      V+L+ L L+ N   ++        M +L  LG+ +          + +LN+
Sbjct: 82  VKISC-HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNI 140

Query: 149 QGNPVAEYDKLAKKVKTLLPNLCIFNARPIDRITKNEKDNIVDKVNDSSNN 199
               +   +   +K            +  I   T  E   I+D    +  N
Sbjct: 141 SKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVAN 191

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.1 bits (130), Expect = 4e-08
 Identities = 23/153 (15%), Positives = 46/153 (30%), Gaps = 21/153 (13%)

Query: 20  SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGL--KHCVNLKWLSLVQNKLQS 77
           SI  +               F+N+   + + +    +  L          L    N L  
Sbjct: 279 SIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTD 338

Query: 78  L--KGIEGLSKPTVLNVGKNKLRSMDDVTSV----VSLRALILNDNEIVSI---CKLDQM 128
              +    L++   L +  N+L+ +  +  +     SL+ L ++ N +            
Sbjct: 339 TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT 398

Query: 129 KELNTLGM----------DSYFFNLNNLNLQGN 151
           K L +L M                +  L+L  N
Sbjct: 399 KSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN 431

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 53.7 bits (129), Expect = 6e-08
 Identities = 36/157 (22%), Positives = 57/157 (36%), Gaps = 22/157 (14%)

Query: 18  PNSIKSLSLTHKALSDVSC--LTDFNNLERLDLSSNNLTSLEGL----KHCVNLKWLSLV 71
            +    L  ++  L+D           LE L L  N L  L  +        +L+ L + 
Sbjct: 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382

Query: 72  QNKLQSLKGIEGLSKP---TVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSIC----K 124
           QN +   +     S       LN+  N L           ++ L L+ N+I SI     K
Sbjct: 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVK 442

Query: 125 LDQMKEL----NTL-----GMDSYFFNLNNLNLQGNP 152
           L+ ++EL    N L     G+     +L  + L  NP
Sbjct: 443 LEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP 479

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.5 bits (137), Expect = 9e-09
 Identities = 43/165 (26%), Positives = 63/165 (38%), Gaps = 28/165 (16%)

Query: 15  TCDPNSIKSLSLTHKALSDV-----SCLTDFNNLERLDLSSNNLT-SLEGLKHCVNLKWL 68
           TC  + + S+ L+ K L+       S L     LE L LS++++  S+ G K   +L  L
Sbjct: 46  TCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSL 105

Query: 69  SLVQNKLQ----SLKGIEGLSKPTVLNVGKNKLR---SMDDVTSVVSLRALILNDNEI-- 119
            L +N L     +L  +   S    LNV  N L     +     + SL  L L+ N I  
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG 165

Query: 120 ---VSICKLDQMKELNTLGMDSYFF----------NLNNLNLQGN 151
              V     D   EL  L +               NL  L++  N
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSN 210

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 33/154 (21%), Positives = 61/154 (39%), Gaps = 23/154 (14%)

Query: 20  SIKSLSLTHKALS---DVSCLTDFNNLERLDLSSNNLT-----SLEGLKHCVNLKWLSLV 71
            +K L+++   L     VS     N+LE LDLS+N+++            C  LK L++ 
Sbjct: 127 GLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAIS 186

Query: 72  QNKLQSLKGIEGLSKPTVLNVGKNKLR-SMDDVTSVVSLRALILNDNEIV-----SICKL 125
            NK+     +        L+V  N     +  +    +L+ L ++ N++      +I   
Sbjct: 187 GNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTC 246

Query: 126 DQMKELNTLGM--------DSYFFNLNNLNLQGN 151
            ++K LN +               +L  L+L  N
Sbjct: 247 TELKLLN-ISSNQFVGPIPPLPLKSLQYLSLAEN 279

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.7 bits (104), Expect = 9e-05
 Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 17/112 (15%)

Query: 35  SCLTDFNNLERLDLSSNNLT-SL-EGLKHCVNLKWLSLVQNKL-----QSLKGIEGLSKP 87
           S L   + L  L L  N L   + + L +   L+ L L  N L       L     L   
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL--- 492

Query: 88  TVLNVGKNKLRSM--DDVTSVVSLRALILNDNEI-----VSICKLDQMKELN 132
             +++  N+L       +  + +L  L L++N         +     +  L+
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 6/89 (6%)

Query: 40  FNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSL-KGI-EGLSKPTVLNVGKN 95
             + ++LDL SN L+SL          L+ L L  NKLQ+L  GI + L     L V  N
Sbjct: 36  PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95

Query: 96  KLRSMDD--VTSVVSLRALILNDNEIVSI 122
           KL+++       +V+L  L L+ N++ S+
Sbjct: 96  KLQALPIGVFDQLVNLAELRLDRNQLKSL 124

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 24/142 (16%)

Query: 22  KSLSLTHKALSDVSC--LTDFNNLERLDLSSNNLTSLE-----GLKHCVNLKWLSLVQNK 74
           ++L +T   L  +         NL  L L  N L SL       L     L +LSL  N+
Sbjct: 88  ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL---TKLTYLSLGYNE 144

Query: 75  LQSL-KGI-EGLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDNEIVSICKLDQMKE 130
           LQSL KG+ + L+    L +  N+L+ + +     +  L+ L L++N++  + +      
Sbjct: 145 LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE------ 198

Query: 131 LNTLGMDSYFFNLNNLNLQGNP 152
               G       L  L LQ NP
Sbjct: 199 ----GAFDSLEKLKMLQLQENP 216

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.8 bits (127), Expect = 4e-08
 Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 8/101 (7%)

Query: 42  NLERLDLSSNNLTSLEGL--KHCVNLKWLSLVQNKLQSL-KGI-EGLSKPTVLNVGKNKL 97
            L  L L++N L SL      H   L  L L  N+L+SL  G+ + L+K   L +  N+L
Sbjct: 84  ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143

Query: 98  RSMDD--VTSVVSLRALILNDNEIVSICK--LDQMKELNTL 134
           +S+       + +L+ L L+ N++ S+     D++ +L T+
Sbjct: 144 QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 43/154 (27%), Positives = 67/154 (43%), Gaps = 17/154 (11%)

Query: 18  PNSIKSLSLTHKALSDVSC--LTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQN 73
           P   + L L    L+ +S         L  L+L  N L +L          L  L L  N
Sbjct: 34  PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93

Query: 74  KLQSL-KGI-EGLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDNEIVSICK--LDQ 127
           +L SL  G+ + L++   L +G N+L+S+       +  L+ L LN N++ SI     D+
Sbjct: 94  QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK 153

Query: 128 MKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAK 161
           +  L TL       +L+   LQ  P   +D+L K
Sbjct: 154 LTNLQTL-------SLSTNQLQSVPHGAFDRLGK 180

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.8 bits (109), Expect = 9e-06
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 12/85 (14%)

Query: 42  NLERLDLSSNNLTSLE-----GLKHCVNLKWLSLVQNKLQSL-KGI-EGLSKPTVLNVGK 94
            L++L L  N L SL       L     LK L L  N+LQS+  G  + L+    L++  
Sbjct: 108 QLDKLYLGGNQLKSLPSGVFDRL---TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST 164

Query: 95  NKLRSMDD--VTSVVSLRALILNDN 117
           N+L+S+       +  L+ + L  N
Sbjct: 165 NQLQSVPHGAFDRLGKLQTITLFGN 189

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 52.0 bits (125), Expect = 7e-08
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 5/81 (6%)

Query: 42  NLERLDLSSNNLTSLE-GL-KHCVNLKWLSLVQNKLQSL-KGIEGLSKPTVLNVGKNKLR 98
            L  LDL +N LT L   +    V+LK L +  NKL  L +GIE L+  T L + +N+L+
Sbjct: 89  QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK 148

Query: 99  SMDDVT--SVVSLRALILNDN 117
           S+       + SL    L  N
Sbjct: 149 SIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 9/126 (7%)

Query: 18  PNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE-GL-KHCVNLKWLSLVQN 73
           P + + L L    ++ +         NL+ L L SN L +L  G+      L  L L  N
Sbjct: 39  PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98

Query: 74  KLQSL-KGI-EGLSKPTVLNVGKNKLRSM-DDVTSVVSLRALILNDNEIVSICK--LDQM 128
           +L  L   + + L     L +  NKL  +   +  +  L  L L+ N++ SI     D++
Sbjct: 99  QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRL 158

Query: 129 KELNTL 134
             L   
Sbjct: 159 SSLTHA 164

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 51.9 bits (124), Expect = 1e-07
 Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 21/142 (14%)

Query: 46  LDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEG-LSKPTVLNVGKNKLRSMDDVT 104
           LDL    L S   L        L+       +L+ IE  + +   LN+  N+L  +DD++
Sbjct: 132 LDLK--GLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMS 189

Query: 105 SVV----SLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLA 160
           S+V    +L+ L L+ NE+ S  +LD++K L           L  L L GN + +  +  
Sbjct: 190 SIVQKAPNLKILNLSGNELKSERELDKIKGL----------KLEELWLDGNSLCDTFRDQ 239

Query: 161 ----KKVKTLLPNLCIFNARPI 178
                 ++   P L   +   +
Sbjct: 240 STYISAIRERFPKLLRLDGHEL 261

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 6/62 (9%)

Query: 40  FNNLERLDLSSNNLTSLEGLKHCV----NLKWLSLVQNKLQSLKGIEGLS--KPTVLNVG 93
              L  L+LS+N L  L+ +   V    NLK L+L  N+L+S + ++ +   K   L + 
Sbjct: 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLD 228

Query: 94  KN 95
            N
Sbjct: 229 GN 230

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 38/240 (15%), Positives = 85/240 (35%), Gaps = 30/240 (12%)

Query: 16  CDPNSIKSLSLTHKALSDV-SCLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQ 72
                   +  +++ L+ V   L      + L LS N+++ L    +     L+ L L  
Sbjct: 28  FSNELESMVDYSNRNLTHVPKDLPP--RTKALSLSQNSISELRMPDISFLSELRVLRLSH 85

Query: 73  NKLQSL-KGI-EGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSI--CKL-DQ 127
           N+++SL   +         L+V  N+L+++     + SLR L L+ N+   +  CK    
Sbjct: 86  NRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC-CPMASLRHLDLSFNDFDVLPVCKEFGN 144

Query: 128 MKELNTLGMDS------------------YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPN 169
           + +L  LG+ +                     +L + +++G            V  L+ +
Sbjct: 145 LTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFH 204

Query: 170 LCIFNARPIDRITKNEKDNIVDKVNDSSNNSDDTIKVRMGKKRGGTRETNDKLSNEEIQW 229
                +  ++        ++       ++ +   +   + +   G    N  L + E  W
Sbjct: 205 PNSLFSVQVNMSVNALG-HLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 51.4 bits (123), Expect = 3e-07
 Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 19/137 (13%)

Query: 40  FNNLERLDLSSNNLTSLEGL--KHCVNLKWLSLVQNKLQSL--KGIEGLSKPTVLNVGKN 95
           F  +    LS ++   +  +      +  +L+  QN       +G   L +   L + +N
Sbjct: 328 FAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN 387

Query: 96  KLRSMDDVTSV-VSLRALILNDNEIVSICKLDQMKELNTLGMDSYFF---NLNNLNLQGN 151
            L++   V  +  ++ +L   D           +  LN+   D       ++  LNL  N
Sbjct: 388 GLKNFFKVALMTKNMSSLETLDV---------SLNSLNSHAYDRTCAWAESILVLNLSSN 438

Query: 152 PVAE--YDKLAKKVKTL 166
            +    +  L  KVK L
Sbjct: 439 MLTGSVFRCLPPKVKVL 455

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.9 bits (114), Expect = 4e-06
 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 12  DNKTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSL-EGLKHCVNLKWL 68
           D       SI  L+L+   L+     CL     ++ LDL +N + S+ + + H   L+ L
Sbjct: 421 DRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIMSIPKDVTHLQALQEL 478

Query: 69  SLVQNKLQSL-KGI-EGLSKPTVLNVGKN 95
           ++  N+L+S+  G+ + L+    + +  N
Sbjct: 479 NVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 28/140 (20%), Positives = 48/140 (34%), Gaps = 21/140 (15%)

Query: 21  IKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSL 78
           IK LS++      + C    ++   L+ + N  T     G      L+ L L +N L++ 
Sbjct: 333 IKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF 392

Query: 79  KGIEG----LSKPTVLNVGKNKLRSM--DDVTS-VVSLRALILNDNEIVSICKLDQMKEL 131
             +      +S    L+V  N L S   D   +   S+  L L+ N +            
Sbjct: 393 FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG---------- 442

Query: 132 NTLGMDSYFFNLNNLNLQGN 151
                      +  L+L  N
Sbjct: 443 --SVFRCLPPKVKVLDLHNN 460

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 16/130 (12%)

Query: 18  PNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQN 73
           P     L L   +L  +      +  +L +L L  N L SL         +L +L+L  N
Sbjct: 27  PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86

Query: 74  KLQSL-KGI-EGLSKPTVLNVGKNKLRSM-----DDVTSVVSLRALILNDNEIVSICK-- 124
           +LQSL  G+ + L++   L +  N+L+S+     D +T    L+ L L  N++ S+    
Sbjct: 87  QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLT---QLKDLRLYQNQLKSVPDGV 143

Query: 125 LDQMKELNTL 134
            D++  L  +
Sbjct: 144 FDRLTSLQYI 153

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 45.4 bits (108), Expect = 8e-06
 Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 6/82 (7%)

Query: 42  NLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSL-KGI-EGLSKPTVLNVGKNKL 97
           +L  L+LS+N L SL          LK L+L  N+LQSL  G+ + L++   L + +N+L
Sbjct: 77  SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136

Query: 98  RSMDDVT--SVVSLRALILNDN 117
           +S+ D     + SL+ + L+DN
Sbjct: 137 KSVPDGVFDRLTSLQYIWLHDN 158

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 51.3 bits (122), Expect = 3e-07
 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 7/117 (5%)

Query: 16  CDPNSIKSLSLTHKALSDV-SCLTDFNNLERLDLSSNN-LTSLEG--LKHCVNLKWLSLV 71
           C P+    L  T     D    L    NL  L + +   L  LE   L+    L+ L++V
Sbjct: 5   CCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV 64

Query: 72  QNKLQSL--KGIEGLSKPTVLNVGKNKLRSM-DDVTSVVSLRALILNDNEIVSICKL 125
           ++ L+ +         + + LN+  N L S+       +SL+ L+L+ N +   C L
Sbjct: 65  KSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCAL 121

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 14/102 (13%)

Query: 44  ERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSL-KGI-EGLSKPTVLNVGKNKLRS 99
            RL+L SN L SL          L  LSL QN++QSL  G+ + L+K T+L + +NKL+S
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90

Query: 100 M-----DDVTSVVSLRALILNDNEIVSICK--LDQMKELNTL 134
           +     D +T    L+ L L+ N++ S+     D++  L  +
Sbjct: 91  LPNGVFDKLT---QLKELALDTNQLKSVPDGIFDRLTSLQKI 129

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 45.7 bits (109), Expect = 5e-06
 Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 6/82 (7%)

Query: 42  NLERLDLSSNNLTSL-EGL-KHCVNLKWLSLVQNKLQSL-KGI-EGLSKPTVLNVGKNKL 97
            L +L LS N + SL +G+      L  L L +NKLQSL  G+ + L++   L +  N+L
Sbjct: 53  QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL 112

Query: 98  RSMDDVT--SVVSLRALILNDN 117
           +S+ D     + SL+ + L+ N
Sbjct: 113 KSVPDGIFDRLTSLQKIWLHTN 134

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 48.8 bits (117), Expect = 6e-07
 Identities = 24/110 (21%), Positives = 50/110 (45%), Gaps = 13/110 (11%)

Query: 18  PNSIKSLSLTHKALSDV-SCLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNK 74
           P  +  L L     + V   L+++ +L  +DLS+N +++L      +   L  L L  N+
Sbjct: 30  PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89

Query: 75  LQSL-KGI-EGLSKPTVLNVGKNKLRSM-----DDVTSVVSLRALILNDN 117
           L+ +     +GL    +L++  N +  +     +D++   +L  L +  N
Sbjct: 90  LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS---ALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 48.4 bits (116), Expect = 8e-07
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 11/87 (12%)

Query: 44  ERLDLSSNNLTSLEG-LKHCVNLKWLSLVQNKLQSL-KGI-EGLSKPTVLNVGKNKLRSM 100
             L L  N  T +   L +  +L  + L  N++ +L       +++   L +  N+LR +
Sbjct: 34  TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93

Query: 101 -----DDVTSVVSLRALILNDNEIVSI 122
                D + S   LR L L+ N+I  +
Sbjct: 94  PPRTFDGLKS---LRLLSLHGNDISVV 117

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 47.5 bits (113), Expect = 4e-06
 Identities = 22/135 (16%), Positives = 51/135 (37%), Gaps = 21/135 (15%)

Query: 14  KTCDPNSIKSLSLTHKALSDV-SCLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSL 70
           + C  ++ +        ++++ S L    N   L      L  ++        +L+ + +
Sbjct: 5   RICHCSN-RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEI 61

Query: 71  VQNKLQSLKGIE-----GLSKPTVLNVGK-NKLRSMDDVT--SVVSLRALILNDNEIVSI 122
            QN    L+ IE      L K   + + K N L  ++     ++ +L+ L++++  I  +
Sbjct: 62  SQN--DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL 119

Query: 123 -----CKLDQMKELN 132
                    Q   L+
Sbjct: 120 PDVHKIHSLQKVLLD 134

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 19/134 (14%)

Query: 37  LTDFNNLERLDLSSNNLTSLEGL--KHCVNLKWLSLVQN-KLQSLKG--IEGLSKPTV-L 90
             +  NL+ L +S+  +  L  +   H +    L +  N  + +++     GLS  +V L
Sbjct: 100 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL 159

Query: 91  NVGKNKLRS-MDDVTSVVSLRALILND-NEIVSICK--LDQMKELNTLGMDS-------- 138
            + KN ++   +   +   L  L L+D N +  +             L +          
Sbjct: 160 WLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219

Query: 139 -YFFNLNNLNLQGN 151
               NL  L  +  
Sbjct: 220 YGLENLKKLRARST 233

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 45.3 bits (108), Expect = 5e-06
 Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 4/62 (6%)

Query: 42 NLERLDLSSNNLTSLE-GL-KHCVNLKWLSLVQNKLQSL-KGI-EGLSKPTVLNVGKNKL 97
          + +RL L++N +T LE G+  H VNL+ L    NKL ++  G+ + L++ T L++  N L
Sbjct: 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93

Query: 98 RS 99
          +S
Sbjct: 94 KS 95

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 42 NLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSL-KGI-EGLSKPTVLNVGKNKL 97
            + L L  N +T LE         L  L L  N+L  L  G+ + L++ T L++  N+L
Sbjct: 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90

Query: 98 RS 99
          +S
Sbjct: 91 KS 92

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 26/163 (15%), Positives = 57/163 (34%), Gaps = 31/163 (19%)

Query: 16  CDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQN 73
           C+ +  +   +T K +  +  L    + + L L   +L ++      +  N+  + +  +
Sbjct: 8   CECHQEEDFRVTCKDIQRIPSLP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSID 65

Query: 74  KLQSLKGIE-----GLSKPTVLNVGKNK-LRSMDDVT--SVVSLRALILNDNEIVSI--- 122
              +L+ +E      LSK T + +   + L  +D      +  L+ L + +  +      
Sbjct: 66  --VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDL 123

Query: 123 CKLDQMKELNTLGM----------DSYFFNLNN----LNLQGN 151
            K+        L +           + F  L N    L L  N
Sbjct: 124 TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 31/168 (18%), Positives = 61/168 (36%), Gaps = 34/168 (20%)

Query: 29  KALSDVSCLTDFNNLERLDLSSNNLTSL------EGLKHCVNLKWLSLVQNKLQS--LKG 80
           + L +  C      LE L + S + T+         L     L  L +  N+L+   ++ 
Sbjct: 306 ETLLEPGC-----QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 360

Query: 81  I-EGLSKP----TVLNVGKNKLRS--MDDVTSVV----SLRALILNDNEI--VSICKLDQ 127
           + +GL +P     VL +    +       + + +    SLR L L++N +    I +L +
Sbjct: 361 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 420

Query: 128 MKELNTLGMDSYFFNLNNLNLQGNPV-AEYDKLAKKVKTLLPNLCIFN 174
                          L  L L       E +   + ++   P+L + +
Sbjct: 421 SVRQPGC-------LLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 461

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	406
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.81
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.8
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.8
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.8
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.79
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.78
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.78
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.78
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.78
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.77
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.77
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.77
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.76
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.76
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.75
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.75
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.75
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.74
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.74
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.74
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.74
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.74
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.73
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.73
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.71
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.71
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.7
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.7
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.7
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.69
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.69
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.69
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.69
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.69
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.68
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.68
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.68
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.68
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.68
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.68
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.67
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.67
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.67
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.67
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.66
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.65
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.65
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.65
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.65
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.64
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.64
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.63
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.63
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.63
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.63
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.63
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.62
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.62
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.62
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.62
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.61
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.61
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.61
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.61
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.6
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.6
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.6
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.6
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.59
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.59
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.59
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.59
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.58
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.58
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.58
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.58
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.58
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.57
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.57
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.57
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.57
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.57
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.57
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.57
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.56
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.56
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.55
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.55
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.55
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.55
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.54
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.54
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.53
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.53
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.53
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.52
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.52
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.51
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.5
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.5
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.5
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.5
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.49
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.48
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.48
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.48
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.46
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.46
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.45
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.42
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.41
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.39
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.39
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.36
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.36
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.36
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.35
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.34
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.32
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.31
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.29
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.29
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.28
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.28
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.26
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.14
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.11
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.97
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.78
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.74
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.71
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.68
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.67
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.66
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.66
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.41
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.37
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.31
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.31
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.31
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.15
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.01
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.49
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.47
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.31
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.3
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.28
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.24
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.07
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.94
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.83
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.29
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.09

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=5.9e-20  Score=178.26  Aligned_cols=168  Identities=20%  Similarity=0.323  Sum_probs=128.4

Q ss_pred             ccccccccCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCC
Q 015448            3 RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIE   82 (406)
Q Consensus         3 ~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l~   82 (406)
                      +++.+.+..+.....+++|+.|+|++|.|+.++.+..+++|++|+|++|.|+.++.+..+++|++|+|++|.|+.++.+.
T Consensus        47 ~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~  126 (308)
T 1h6u_A           47 SAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLA  126 (308)
T ss_dssp             ECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGGGT
T ss_pred             EeeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchhhc
Confidence            34555666665556677888888888888877767778888888888888887777777888888888888888777777


Q ss_pred             CCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC----------CCCCCCCEEEcCCCC
Q 015448           83 GLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD----------SYFFNLNNLNLQGNP  152 (406)
Q Consensus        83 ~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls----------~~l~~L~~L~Ls~N~  152 (406)
                      .+++|++|+|++|.++.++.+..+++|++|+|++|.++.++.+..+++|+.|+|+          ..+++|++|+|++|.
T Consensus       127 ~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~  206 (308)
T 1h6u_A          127 GLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQ  206 (308)
T ss_dssp             TCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSC
T ss_pred             CCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCc
Confidence            7888888888888888777777778888888888888877777777888888777          466778888888888


Q ss_pred             CCCchhHHHHHHhcCCCcccccC
Q 015448          153 VAEYDKLAKKVKTLLPNLCIFNA  175 (406)
Q Consensus       153 i~~~~~~~~~~~~~lp~L~~Ld~  175 (406)
                      +..++.     +..+++|+.|+.
T Consensus       207 l~~~~~-----l~~l~~L~~L~l  224 (308)
T 1h6u_A          207 ISDVSP-----LANTSNLFIVTL  224 (308)
T ss_dssp             CCBCGG-----GTTCTTCCEEEE
T ss_pred             cCcccc-----ccCCCCCCEEEc
Confidence            877764     456777776654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.81  E-value=2.3e-20  Score=179.80  Aligned_cols=158  Identities=26%  Similarity=0.407  Sum_probs=123.7

Q ss_pred             CCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCCCCCCCcEEEcC
Q 015448           14 KTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVG   93 (406)
Q Consensus        14 ~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls   93 (406)
                      ....+++|+.|++++|.+..++.+..+++|++|+|++|.|+.++.+..+++|++|+|++|.++.++.+..+++|++|+|+
T Consensus        41 ~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~  120 (291)
T 1h6t_A           41 TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE  120 (291)
T ss_dssp             CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECT
T ss_pred             chhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChhhccCCCCCEEECC
Confidence            33446678888888888887777777888888888888888777677788888888888888877777778888888888


Q ss_pred             CCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC----------CCCCCCCEEEcCCCCCCCchhHHHHH
Q 015448           94 KNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD----------SYFFNLNNLNLQGNPVAEYDKLAKKV  163 (406)
Q Consensus        94 ~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls----------~~l~~L~~L~Ls~N~i~~~~~~~~~~  163 (406)
                      +|.|+.++.+..+++|++|+|++|.|+.++.+..+++|++|+|+          ..+++|+.|+|++|.|+.++.     
T Consensus       121 ~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l~~-----  195 (291)
T 1h6t_A          121 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA-----  195 (291)
T ss_dssp             TSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG-----
T ss_pred             CCcCCCChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCCChh-----
Confidence            88888777777788888888888888877777778888888877          567788888888888888764     


Q ss_pred             HhcCCCcccccCc
Q 015448          164 KTLLPNLCIFNAR  176 (406)
Q Consensus       164 ~~~lp~L~~Ld~~  176 (406)
                      +..+++|+.|+..
T Consensus       196 l~~l~~L~~L~l~  208 (291)
T 1h6t_A          196 LAGLKNLDVLELF  208 (291)
T ss_dssp             GTTCTTCSEEEEE
T ss_pred             hccCCCCCEEECc
Confidence            4667888876643

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.80  E-value=2.7e-20  Score=176.92  Aligned_cols=175  Identities=22%  Similarity=0.297  Sum_probs=136.6

Q ss_pred             cccccccCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCCC
Q 015448            4 LSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEG   83 (406)
Q Consensus         4 Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l~~   83 (406)
                      |+.+.+..+.....+++|+.|++++|.|+.++.+..+++|++|+|++|.|+.++++..+++|++|+|++|.|+.++.+..
T Consensus        26 l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~~  105 (263)
T 1xeu_A           26 LGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPS  105 (263)
T ss_dssp             HTCSCTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTTCCC
T ss_pred             hcCCCcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCcccc
Confidence            44555655555566889999999999999999888999999999999999999889999999999999999999987666


Q ss_pred             CCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC----------CCCCCCCEEEcCCCCC
Q 015448           84 LSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD----------SYFFNLNNLNLQGNPV  153 (406)
Q Consensus        84 l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls----------~~l~~L~~L~Ls~N~i  153 (406)
                       ++|++|+|++|.|+.++.+..+++|+.|+|++|.|+.++.+..+++|++|+|+          ..+++|+.|+|++|++
T Consensus       106 -~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          106 -ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             -SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEEE
T ss_pred             -CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCCcc
Confidence             99999999999999998899999999999999999998877777777766666          4556666677776666


Q ss_pred             CCchhHHHHHHhcCCCcccccCcCCC
Q 015448          154 AEYDKLAKKVKTLLPNLCIFNARPID  179 (406)
Q Consensus       154 ~~~~~~~~~~~~~lp~L~~Ld~~~~~  179 (406)
                      ...+......+...+.+..+++..+.
T Consensus       185 ~~~~~~~~~~l~~~~~l~~l~~~~i~  210 (263)
T 1xeu_A          185 VNEPVKYQPELYITNTVKDPDGRWIS  210 (263)
T ss_dssp             ECCCEECCSEEEEECCCBCTTSCBCC
T ss_pred             cCCccccccceEECCeeecCCCCCcC
Confidence            55542111111223445555555544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.80  E-value=1.8e-19  Score=173.54  Aligned_cols=182  Identities=22%  Similarity=0.250  Sum_probs=158.7

Q ss_pred             ccccccccCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCC
Q 015448            3 RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIE   82 (406)
Q Consensus         3 ~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l~   82 (406)
                      +++.+.+..+.....+++|++|+|++|.|+.++.+..+++|++|+|++|.++.++.+..+++|++|+|++|.|+.++.+.
T Consensus        52 ~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~~l~  131 (291)
T 1h6t_A           52 IANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLV  131 (291)
T ss_dssp             ECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCGGGG
T ss_pred             EccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCChhhc
Confidence            46667777777777789999999999999999889999999999999999999999999999999999999999998899


Q ss_pred             CCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC----------CCCCCCCEEEcCCCC
Q 015448           83 GLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD----------SYFFNLNNLNLQGNP  152 (406)
Q Consensus        83 ~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls----------~~l~~L~~L~Ls~N~  152 (406)
                      .+++|+.|+|++|.|+.++.+..+++|++|+|++|.|+.++.+..+++|++|+|+          ..+++|+.|+|++|+
T Consensus       132 ~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          132 HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             GCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEE
T ss_pred             CCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCc
Confidence            9999999999999999998899999999999999999999889999999999998          678899999999999


Q ss_pred             CCCchhHHHHHHhcCCCcccccCcCCChhhhh
Q 015448          153 VAEYDKLAKKVKTLLPNLCIFNARPIDRITKN  184 (406)
Q Consensus       153 i~~~~~~~~~~~~~lp~L~~Ld~~~~~~~~~~  184 (406)
                      +...+......+..++.+..+++.++......
T Consensus       212 i~~~~~~~~~~l~~~~~l~~l~~~~i~~~~~~  243 (291)
T 1h6t_A          212 CLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS  243 (291)
T ss_dssp             EECCCEECCSEEEEECCCBCTTSCBCCEEEEG
T ss_pred             ccCCccccccccEEcceEECCCCCCcCCCeec
Confidence            98766433222334566777777777655443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.80  E-value=9.3e-20  Score=176.89  Aligned_cols=157  Identities=22%  Similarity=0.336  Sum_probs=146.2

Q ss_pred             CccccccccCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCC
Q 015448            2 TRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGI   81 (406)
Q Consensus         2 ~~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l   81 (406)
                      ++|+.|.+..+.+...+++|++|+|++|.|+.++.+..+++|++|+|++|.|+.++.+..+++|++|+|++|.++.++.+
T Consensus        68 L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l  147 (308)
T 1h6u_A           68 LELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPL  147 (308)
T ss_dssp             EECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGG
T ss_pred             EEccCCcCCCChhHccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCccc
Confidence            35677888877777889999999999999999999999999999999999999998899999999999999999999889


Q ss_pred             CCCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC----------CCCCCCCEEEcCCC
Q 015448           82 EGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD----------SYFFNLNNLNLQGN  151 (406)
Q Consensus        82 ~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls----------~~l~~L~~L~Ls~N  151 (406)
                      ..+++|+.|+|++|.++.++.+..+++|+.|+|++|.|+.++.+..+++|++|+|+          ..+++|+.|+|++|
T Consensus       148 ~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N  227 (308)
T 1h6u_A          148 AGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQ  227 (308)
T ss_dssp             GGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEE
T ss_pred             cCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCC
Confidence            99999999999999999998899999999999999999999989999999999998          67899999999999


Q ss_pred             CCCCchh
Q 015448          152 PVAEYDK  158 (406)
Q Consensus       152 ~i~~~~~  158 (406)
                      +++..+.
T Consensus       228 ~i~~~~~  234 (308)
T 1h6u_A          228 TITNQPV  234 (308)
T ss_dssp             EEECCCE
T ss_pred             eeecCCe
Confidence            9988664

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.79  E-value=1.8e-19  Score=190.87  Aligned_cols=154  Identities=27%  Similarity=0.432  Sum_probs=82.8

Q ss_pred             CCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCCCCCCCcEEEcCCCC
Q 015448           17 DPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNK   96 (406)
Q Consensus        17 ~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~   96 (406)
                      .+.+|+.|+|++|.|..++.+..|++|+.|+|++|.|+.++++..|++|+.|+|++|.|..++.+..|++|+.|+|++|.
T Consensus        41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~  120 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNG  120 (605)
T ss_dssp             HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSC
T ss_pred             cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCC
Confidence            34455555555555555555555555555555555555554455555555555555555555555555555555555555


Q ss_pred             CCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC----------CCCCCCCEEEcCCCCCCCchhHHHHHHhc
Q 015448           97 LRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD----------SYFFNLNNLNLQGNPVAEYDKLAKKVKTL  166 (406)
Q Consensus        97 i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls----------~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~  166 (406)
                      |..++.+..+++|+.|+|++|.|+.++.+..|++|+.|+|+          ..+++|+.|+|++|.|..++.     +..
T Consensus       121 l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~~-----l~~  195 (605)
T 1m9s_A          121 ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA-----LAG  195 (605)
T ss_dssp             CCCCGGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG-----GTT
T ss_pred             CCCCccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCChH-----Hcc
Confidence            55555555555555555555555555445555555555554          345556666666666655542     344


Q ss_pred             CCCcccccC
Q 015448          167 LPNLCIFNA  175 (406)
Q Consensus       167 lp~L~~Ld~  175 (406)
                      |++|+.|+.
T Consensus       196 l~~L~~L~L  204 (605)
T 1m9s_A          196 LKNLDVLEL  204 (605)
T ss_dssp             CTTCSEEEC
T ss_pred             CCCCCEEEc
Confidence            555555443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.78  E-value=5.2e-18  Score=160.98  Aligned_cols=169  Identities=26%  Similarity=0.334  Sum_probs=142.4

Q ss_pred             ccccccccCCCCCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCCC
Q 015448            3 RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSL   78 (406)
Q Consensus         3 ~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~l   78 (406)
                      +++.+.+..+. ...+.+|+.|+|++|.|+.++  .|..+++|++|+|++|.|+.++.  |..+++|++|+|++|.|+.+
T Consensus        22 ~~~~~~l~~ip-~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~  100 (270)
T 2o6q_A           22 DCSSKKLTAIP-SNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL  100 (270)
T ss_dssp             ECTTSCCSSCC-SCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC
T ss_pred             EccCCCCCccC-CCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcC
Confidence            45556665543 334678999999999999987  68899999999999999998874  68899999999999999988


Q ss_pred             C--CCCCCCCCcEEEcCCCCCCCCcC--CCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC------------CCC
Q 015448           79 K--GIEGLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD------------SYF  140 (406)
Q Consensus        79 ~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls------------~~l  140 (406)
                      +  .+..+++|++|+|++|.|+.++.  +..+++|++|+|++|.|+.++.  +..+++|++|+|+            ..+
T Consensus       101 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  180 (270)
T 2o6q_A          101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL  180 (270)
T ss_dssp             CTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             CHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccC
Confidence            8  37889999999999999999863  7889999999999999998875  7889999999998            467


Q ss_pred             CCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccC
Q 015448          141 FNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNA  175 (406)
Q Consensus       141 ~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~  175 (406)
                      ++|+.|+|++|.+..++..   .+..+++|+.|+.
T Consensus       181 ~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l  212 (270)
T 2o6q_A          181 TELKTLKLDNNQLKRVPEG---AFDSLEKLKMLQL  212 (270)
T ss_dssp             TTCCEEECCSSCCSCCCTT---TTTTCTTCCEEEC
T ss_pred             CCcCEEECCCCcCCcCCHH---HhccccCCCEEEe
Confidence            8999999999999988753   2567888887654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.78  E-value=3e-18  Score=162.95  Aligned_cols=156  Identities=27%  Similarity=0.359  Sum_probs=89.1

Q ss_pred             CCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCC--CCCCCCCcEEEcCC
Q 015448           17 DPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG--IEGLSKPTVLNVGK   94 (406)
Q Consensus        17 ~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~   94 (406)
                      .+.+|+.|++++|.++.++.+..+++|++|+|++|.++.++.+..+++|++|+|++|.|+.++.  +..+++|++|+|++
T Consensus        39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  118 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE  118 (272)
T ss_dssp             HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence            3455555555555555555555555555555555555555555555555555555555555542  45555555555555


Q ss_pred             CCCCCCcC--CCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC------------CCCCCCCEEEcCCCCCCCchh
Q 015448           95 NKLRSMDD--VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD------------SYFFNLNNLNLQGNPVAEYDK  158 (406)
Q Consensus        95 N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls------------~~l~~L~~L~Ls~N~i~~~~~  158 (406)
                      |.|+.++.  +..+++|++|+|++|.++.++.  +..+++|++|+|+            ..+++|+.|+|++|.+..++.
T Consensus       119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  198 (272)
T 3rfs_A          119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD  198 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence            55555442  4555555555555555555543  4455555555555            345677777777777766654


Q ss_pred             HHHHHHhcCCCcccccC
Q 015448          159 LAKKVKTLLPNLCIFNA  175 (406)
Q Consensus       159 ~~~~~~~~lp~L~~Ld~  175 (406)
                      .   .+..+++|+.|+.
T Consensus       199 ~---~~~~l~~L~~L~l  212 (272)
T 3rfs_A          199 G---VFDRLTSLQYIWL  212 (272)
T ss_dssp             T---TTTTCTTCCEEEC
T ss_pred             H---HHhCCcCCCEEEc
Confidence            2   2455666665554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.78  E-value=1e-18  Score=166.25  Aligned_cols=154  Identities=29%  Similarity=0.376  Sum_probs=139.1

Q ss_pred             ccccccccCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCCCCC
Q 015448            3 RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSLKG   80 (406)
Q Consensus         3 ~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~l~~   80 (406)
                      .++.+.+........+++|++|+|++|.++.++.+..+++|++|+|++|.|+.++.  |..+++|++|+|++|.++.++.
T Consensus        47 ~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  126 (272)
T 3rfs_A           47 IANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD  126 (272)
T ss_dssp             ECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             eeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCH
Confidence            45666777777777899999999999999999989999999999999999999875  8899999999999999998883


Q ss_pred             --CCCCCCCcEEEcCCCCCCCCcC--CCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC------------CCCCC
Q 015448           81 --IEGLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD------------SYFFN  142 (406)
Q Consensus        81 --l~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls------------~~l~~  142 (406)
                        +..+++|++|+|++|.|+.++.  +..+++|++|+|++|.|+.++.  +..+++|++|+|+            ..+++
T Consensus       127 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  206 (272)
T 3rfs_A          127 GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS  206 (272)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             HHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcC
Confidence              8899999999999999999874  7889999999999999999876  7889999999998            56889


Q ss_pred             CCEEEcCCCCCCCc
Q 015448          143 LNNLNLQGNPVAEY  156 (406)
Q Consensus       143 L~~L~Ls~N~i~~~  156 (406)
                      |+.|+|++|++.+.
T Consensus       207 L~~L~l~~N~~~~~  220 (272)
T 3rfs_A          207 LQYIWLHDNPWDCT  220 (272)
T ss_dssp             CCEEECCSSCBCCC
T ss_pred             CCEEEccCCCcccc
Confidence            99999999998764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.78  E-value=4.6e-19  Score=187.76  Aligned_cols=180  Identities=23%  Similarity=0.261  Sum_probs=156.6

Q ss_pred             CccccccccCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCC
Q 015448            2 TRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGI   81 (406)
Q Consensus         2 ~~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l   81 (406)
                      +.|+.+.|..+..+..+++|+.|+|++|.|+.++.+..|++|++|+|++|.|+.++.+..|++|+.|+|++|.|..++.+
T Consensus        48 L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l  127 (605)
T 1m9s_A           48 IIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGL  127 (605)
T ss_dssp             CBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCGGG
T ss_pred             EECcCCCCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCccc
Confidence            45677778777777889999999999999999988999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC----------CCCCCCCEEEcCCC
Q 015448           82 EGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD----------SYFFNLNNLNLQGN  151 (406)
Q Consensus        82 ~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls----------~~l~~L~~L~Ls~N  151 (406)
                      ..|++|+.|+|++|.|+.++.+..+++|+.|+|++|.|+.++.+..|++|+.|+|+          ..+++|+.|+|++|
T Consensus       128 ~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          128 VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQ  207 (605)
T ss_dssp             GGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSE
T ss_pred             cCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCC
Confidence            99999999999999999998899999999999999999999889999999999998          67899999999999


Q ss_pred             CCCCchhHHHHHHhcCCCcccccCcCCChh
Q 015448          152 PVAEYDKLAKKVKTLLPNLCIFNARPIDRI  181 (406)
Q Consensus       152 ~i~~~~~~~~~~~~~lp~L~~Ld~~~~~~~  181 (406)
                      ++...+......+..++.|..+++..+...
T Consensus       208 ~l~~~p~~~~~~l~~~~~l~~l~g~~~~~~  237 (605)
T 1m9s_A          208 ECLNKPINHQSNLVVPNTVKNTDGSLVTPE  237 (605)
T ss_dssp             EEECCCCCCCSSCEEECCCBCSSSCBCCCS
T ss_pred             cCcCCcccccccEEecccccccCCCCcCch
Confidence            998775432112233455555666665433

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.77  E-value=8.4e-18  Score=160.33  Aligned_cols=171  Identities=24%  Similarity=0.250  Sum_probs=121.7

Q ss_pred             ccccccccCCCC--CCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCC-CCCCC--CCCCCCCCcEEEecCCCC
Q 015448            3 RLSTQQILKDNK--TCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNN-LTSLE--GLKHCVNLKWLSLVQNKL   75 (406)
Q Consensus         3 ~Ls~n~i~~~~~--~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~-l~~l~--~l~~L~~L~~L~Ls~N~l   75 (406)
                      +|+.+.|..+.+  +..+++|++|+|++|.|+.+.  .+..+++|++|+|++|. ++.++  .+..+++|++|+|++|.+
T Consensus        38 ~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l  117 (285)
T 1ozn_A           38 FLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL  117 (285)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             EeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcC
Confidence            345555555542  455677777777777777663  66777777777777776 76663  367777788888888877


Q ss_pred             CCCC--CCCCCCCCcEEEcCCCCCCCCcC--CCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC------------
Q 015448           76 QSLK--GIEGLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD------------  137 (406)
Q Consensus        76 ~~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls------------  137 (406)
                      +.++  .+..+++|++|+|++|.|+.++.  +..+++|++|+|++|.|+.++.  +..+++|++|+|+            
T Consensus       118 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  197 (285)
T 1ozn_A          118 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF  197 (285)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             CEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHc
Confidence            7665  36777788888888888777653  6677788888888888877764  6777788888777            


Q ss_pred             CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCc
Q 015448          138 SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNAR  176 (406)
Q Consensus       138 ~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~  176 (406)
                      ..+++|+.|+|++|.+..++..   .+..+++|+.|+..
T Consensus       198 ~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~  233 (285)
T 1ozn_A          198 RDLGRLMTLYLFANNLSALPTE---ALAPLRALQYLRLN  233 (285)
T ss_dssp             TTCTTCCEEECCSSCCSCCCHH---HHTTCTTCCEEECC
T ss_pred             cCcccccEeeCCCCcCCcCCHH---HcccCcccCEEecc
Confidence            4567888888888888876642   35677888866543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.77  E-value=2.6e-18  Score=167.99  Aligned_cols=162  Identities=20%  Similarity=0.340  Sum_probs=125.4

Q ss_pred             CCCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCCCCCCCcEEEc
Q 015448           13 NKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNV   92 (406)
Q Consensus        13 ~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~L   92 (406)
                      .....+++|+.|++++|.+..++.+..+++|++|++++|.+..++.+..+++|+.|++++|.+..++.+..+++|++|++
T Consensus       149 ~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l  228 (347)
T 4fmz_A          149 SPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKI  228 (347)
T ss_dssp             GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEEC
T ss_pred             cchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEc
Confidence            34566788888888888888877777888888888888888887777778888888888888877776777788888888


Q ss_pred             CCCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC----------CCCCCCCEEEcCCCCCCCchhHHHH
Q 015448           93 GKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD----------SYFFNLNNLNLQGNPVAEYDKLAKK  162 (406)
Q Consensus        93 s~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls----------~~l~~L~~L~Ls~N~i~~~~~~~~~  162 (406)
                      ++|.++.++.+..+++|++|++++|.++.++.+..+++|++|+++          ..+++|+.|+|++|.+......   
T Consensus       229 ~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~---  305 (347)
T 4fmz_A          229 GNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDME---  305 (347)
T ss_dssp             CSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHH---
T ss_pred             cCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChh---
Confidence            888888777777788888888888888877777777888888777          4667888888888888766542   


Q ss_pred             HHhcCCCcccccCcC
Q 015448          163 VKTLLPNLCIFNARP  177 (406)
Q Consensus       163 ~~~~lp~L~~Ld~~~  177 (406)
                      .+..+++|+.|+...
T Consensus       306 ~l~~l~~L~~L~L~~  320 (347)
T 4fmz_A          306 VIGGLTNLTTLFLSQ  320 (347)
T ss_dssp             HHHTCTTCSEEECCS
T ss_pred             HhhccccCCEEEccC
Confidence            356678887666443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.77  E-value=1e-17  Score=158.94  Aligned_cols=156  Identities=29%  Similarity=0.385  Sum_probs=138.1

Q ss_pred             CccccccccCCCC--CCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCC
Q 015448            2 TRLSTQQILKDNK--TCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKL   75 (406)
Q Consensus         2 ~~Ls~n~i~~~~~--~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l   75 (406)
                      ++|+.+.|..+.+  +..+++|++|+|++|.|+.++  .|..+++|++|+|++|.|+.++.  |..+++|++|+|++|.+
T Consensus        42 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  121 (270)
T 2o6q_A           42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL  121 (270)
T ss_dssp             EECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCC
T ss_pred             EECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCcc
Confidence            3567777877754  566899999999999999987  57889999999999999999873  78999999999999999


Q ss_pred             CCCCC--CCCCCCCcEEEcCCCCCCCCcC--CCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC------------
Q 015448           76 QSLKG--IEGLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD------------  137 (406)
Q Consensus        76 ~~l~~--l~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls------------  137 (406)
                      +.++.  +..+++|++|+|++|.|+.++.  +..+++|++|+|++|.|+.++.  +..+++|++|+|+            
T Consensus       122 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  201 (270)
T 2o6q_A          122 KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF  201 (270)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             CeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHh
Confidence            98883  8899999999999999999874  7889999999999999999875  7889999999998            


Q ss_pred             CCCCCCCEEEcCCCCCCCch
Q 015448          138 SYFFNLNNLNLQGNPVAEYD  157 (406)
Q Consensus       138 ~~l~~L~~L~Ls~N~i~~~~  157 (406)
                      ..+++|+.|+|++|++.+.+
T Consensus       202 ~~l~~L~~L~l~~N~~~c~c  221 (270)
T 2o6q_A          202 DSLEKLKMLQLQENPWDCTC  221 (270)
T ss_dssp             TTCTTCCEEECCSSCBCCSS
T ss_pred             ccccCCCEEEecCCCeeCCC
Confidence            46789999999999997654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.76  E-value=2.6e-17  Score=154.50  Aligned_cols=153  Identities=25%  Similarity=0.364  Sum_probs=122.5

Q ss_pred             ccccccccCCCCCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCCC
Q 015448            3 RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSL   78 (406)
Q Consensus         3 ~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~l   78 (406)
                      +++.+.+..+. ...+.+|+.|+|++|.|+.++  .|..+++|++|+|++|.|+.++.  |..+++|++|+|++|.|+.+
T Consensus        20 ~~~~~~l~~~p-~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~   98 (251)
T 3m19_A           20 DCQGKSLDSVP-SGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL   98 (251)
T ss_dssp             ECTTCCCSSCC-SCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC
T ss_pred             ecCCCCccccC-CCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccccc
Confidence            34445554443 234578999999999999886  68899999999999999998864  88999999999999999988


Q ss_pred             C--CCCCCCCCcEEEcCCCCCCCCcC--CCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC------------CCC
Q 015448           79 K--GIEGLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD------------SYF  140 (406)
Q Consensus        79 ~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls------------~~l  140 (406)
                      +  .+..+++|++|+|++|.|+.++.  +..+++|++|+|++|.|+.++.  +..+++|++|+|+            ..+
T Consensus        99 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  178 (251)
T 3m19_A           99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL  178 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             ChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCC
Confidence            8  47889999999999999999874  6789999999999999998875  6677766666665            345


Q ss_pred             CCCCEEEcCCCCCCCc
Q 015448          141 FNLNNLNLQGNPVAEY  156 (406)
Q Consensus       141 ~~L~~L~Ls~N~i~~~  156 (406)
                      ++|+.|+|++|++.+.
T Consensus       179 ~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          179 GKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTCCEEECCSCCBCTT
T ss_pred             CCCCEEEeeCCceeCC
Confidence            5666666666666554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.76  E-value=1.2e-17  Score=155.23  Aligned_cols=169  Identities=21%  Similarity=0.238  Sum_probs=132.0

Q ss_pred             ccccccccCCCCCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCCC
Q 015448            3 RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSL   78 (406)
Q Consensus         3 ~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~l   78 (406)
                      +++.+.+..+. ...+++|+.|+|++|.|+.+.  .|..+++|++|+|++|.|+.++.  |..+++|++|+|++|.|+.+
T Consensus        25 ~c~~~~l~~ip-~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l  103 (229)
T 3e6j_A           25 DCRSKRHASVP-AGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL  103 (229)
T ss_dssp             ECTTSCCSSCC-SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             EccCCCcCccC-CCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc
Confidence            34444444443 344688999999999999884  68889999999999999988864  78899999999999999988


Q ss_pred             CC--CCCCCCCcEEEcCCCCCCCCc-CCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCC
Q 015448           79 KG--IEGLSKPTVLNVGKNKLRSMD-DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAE  155 (406)
Q Consensus        79 ~~--l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~  155 (406)
                      +.  +..+++|++|+|++|.|+.+| .+..+++|++|+|++|.|+.++. ..+         ..+++|+.|+|++|++.+
T Consensus       104 ~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~-~~~---------~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          104 PSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH-GAF---------DRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCT-TTT---------TTCTTCCEEECTTSCBCT
T ss_pred             ChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCH-HHH---------hCCCCCCEEEeeCCCccC
Confidence            83  788999999999999999887 57888999999999999988764 112         245689999999999986


Q ss_pred             chh----HHHHHHhcCCCcccccCcCCChhh
Q 015448          156 YDK----LAKKVKTLLPNLCIFNARPIDRIT  182 (406)
Q Consensus       156 ~~~----~~~~~~~~lp~L~~Ld~~~~~~~~  182 (406)
                      .+.    ++.++....+.+..+++.++....
T Consensus       174 ~c~~~~~l~~~~~~~~~~~~~~~g~~v~~~~  204 (229)
T 3e6j_A          174 ECRDIMYLRNWVADHTSIAMRWDGKAVNDPD  204 (229)
T ss_dssp             TBGGGHHHHHHHHHCGGGEEEESSSEEECTT
T ss_pred             CcchhHHHHHHHHhCccccccccCcccCCCC
Confidence            543    555666666777777776654433

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.76  E-value=1.1e-17  Score=161.02  Aligned_cols=173  Identities=26%  Similarity=0.219  Sum_probs=140.2

Q ss_pred             ccccccccCCCCCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCC-
Q 015448            3 RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK-   79 (406)
Q Consensus         3 ~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~-   79 (406)
                      +++.+.+..+.. ..+++++.|+|++|.|+.++  .|..+++|++|+|++|.|+.++....+++|++|+|++|.|+.+| 
T Consensus        16 ~~~~~~l~~ip~-~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~   94 (290)
T 1p9a_G           16 NCDKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL   94 (290)
T ss_dssp             ECTTSCCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCC
T ss_pred             ECCCCCCCcCCC-CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCch
Confidence            445555555432 34678999999999998875  78889999999999999998887788999999999999999988 


Q ss_pred             CCCCCCCCcEEEcCCCCCCCCc--CCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC------------CCCCCC
Q 015448           80 GIEGLSKPTVLNVGKNKLRSMD--DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD------------SYFFNL  143 (406)
Q Consensus        80 ~l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls------------~~l~~L  143 (406)
                      .+..+++|++|+|++|.|+.++  .+..+++|++|+|++|.|+.++.  +..+++|+.|+|+            ..+++|
T Consensus        95 ~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L  174 (290)
T 1p9a_G           95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL  174 (290)
T ss_dssp             CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTC
T ss_pred             hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCC
Confidence            5888999999999999999886  37889999999999999998875  6788999999988            457899


Q ss_pred             CEEEcCCCCCCCchhHHHHHHhcCCCccccc--CcCCCh
Q 015448          144 NNLNLQGNPVAEYDKLAKKVKTLLPNLCIFN--ARPIDR  180 (406)
Q Consensus       144 ~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld--~~~~~~  180 (406)
                      +.|+|++|.|..++..    +..+++|+.|+  ++++.+
T Consensus       175 ~~L~L~~N~l~~ip~~----~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          175 DTLLLQENSLYTIPKG----FFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CEEECCSSCCCCCCTT----TTTTCCCSEEECCSCCBCC
T ss_pred             CEEECCCCcCCccChh----hcccccCCeEEeCCCCccC
Confidence            9999999999988753    33456677554  555543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.75  E-value=9e-18  Score=170.86  Aligned_cols=169  Identities=22%  Similarity=0.290  Sum_probs=97.6

Q ss_pred             ccccccccCCC--CCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCC
Q 015448            3 RLSTQQILKDN--KTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQ   76 (406)
Q Consensus         3 ~Ls~n~i~~~~--~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~   76 (406)
                      +|+.|.|..+.  .+..+++|+.|+|++|.|+.++  .|..+++|++|+|++|.|+.++.  |..+++|++|+|++|.|+
T Consensus        81 ~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  160 (452)
T 3zyi_A           81 NLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE  160 (452)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC
T ss_pred             ECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc
Confidence            44555555442  2344566666666666666553  55666666666666666666542  555666666666666665


Q ss_pred             CCC--C-------------------------CCCCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccc--cCC
Q 015448           77 SLK--G-------------------------IEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICK--LDQ  127 (406)
Q Consensus        77 ~l~--~-------------------------l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~--l~~  127 (406)
                      .++  .                         +..+++|++|+|++|.|+.++.+..+++|+.|+|++|.|+.+..  +..
T Consensus       161 ~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  240 (452)
T 3zyi_A          161 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHG  240 (452)
T ss_dssp             EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTT
T ss_pred             eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccC
Confidence            444  1                         33444555555555555555555555556666666665555432  555


Q ss_pred             CCCCcEeeCC------------CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCccccc
Q 015448          128 MKELNTLGMD------------SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFN  174 (406)
Q Consensus       128 L~~L~~L~Ls------------~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld  174 (406)
                      +++|+.|+|+            ..+++|+.|+|++|.|+.++..   .+..+++|+.|+
T Consensus       241 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~  296 (452)
T 3zyi_A          241 LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD---LFTPLRYLVELH  296 (452)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT---SSTTCTTCCEEE
T ss_pred             ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChH---HhccccCCCEEE
Confidence            5666666655            3456777777777777666532   244566666554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.75  E-value=1.3e-17  Score=162.98  Aligned_cols=135  Identities=19%  Similarity=0.375  Sum_probs=92.5

Q ss_pred             ccccccccCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCC
Q 015448            3 RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIE   82 (406)
Q Consensus         3 ~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l~   82 (406)
                      .++.+.+..+.....+++|++|++++|.++.++.+..+++|++|+|++|.++.++.+..+++|++|+|++|.+..++.+.
T Consensus        50 ~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~~~  129 (347)
T 4fmz_A           50 VVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISPLA  129 (347)
T ss_dssp             ECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGGGT
T ss_pred             EEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchhhc
Confidence            34555666655556677788888888888777767777888888888888777777777778888888888777776666


Q ss_pred             CCCCCcEEEcCCCC-CCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC
Q 015448           83 GLSKPTVLNVGKNK-LRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD  137 (406)
Q Consensus        83 ~l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls  137 (406)
                      .+++|++|++++|. +..++.+..+++|++|++++|.+..++.+..+++|++|+++
T Consensus       130 ~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~  185 (347)
T 4fmz_A          130 NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLN  185 (347)
T ss_dssp             TCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECT
T ss_pred             cCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEcc
Confidence            67777777777763 34444555666666666666666555555555555555555

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.75  E-value=1.5e-17  Score=168.75  Aligned_cols=169  Identities=25%  Similarity=0.303  Sum_probs=103.1

Q ss_pred             ccccccccCCC--CCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCC
Q 015448            3 RLSTQQILKDN--KTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQ   76 (406)
Q Consensus         3 ~Ls~n~i~~~~--~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~   76 (406)
                      +|+.|.|..+.  .+..+++|+.|+|++|.|+.++  .|..+++|++|+|++|.|+.++.  |..+++|++|+|++|.|.
T Consensus        70 ~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~  149 (440)
T 3zyj_A           70 NLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE  149 (440)
T ss_dssp             ECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC
T ss_pred             EccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccc
Confidence            45555555543  2344666666676666666654  56666666666666666666643  566666666666666655


Q ss_pred             CCC---------------------------CCCCCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCcc--ccCC
Q 015448           77 SLK---------------------------GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSIC--KLDQ  127 (406)
Q Consensus        77 ~l~---------------------------~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~--~l~~  127 (406)
                      .++                           .|..+++|++|+|++|.|+.+|.+..+++|+.|+|++|.|+.+.  .+..
T Consensus       150 ~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  229 (440)
T 3zyj_A          150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQG  229 (440)
T ss_dssp             EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTT
T ss_pred             ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhcc
Confidence            444                           14445556666666666666665666666666666666666553  2556


Q ss_pred             CCCCcEeeCC------------CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCccccc
Q 015448          128 MKELNTLGMD------------SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFN  174 (406)
Q Consensus       128 L~~L~~L~Ls------------~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld  174 (406)
                      +++|+.|+|+            ..+++|+.|+|++|.|+.++..   .+..+++|+.|+
T Consensus       230 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~  285 (440)
T 3zyj_A          230 LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD---LFTPLHHLERIH  285 (440)
T ss_dssp             CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTT---TTSSCTTCCEEE
T ss_pred             CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChh---HhccccCCCEEE
Confidence            6666666665            3567777777777777766542   245567777554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.74  E-value=6e-18  Score=165.62  Aligned_cols=173  Identities=17%  Similarity=0.230  Sum_probs=135.5

Q ss_pred             ccccccccCCCC-CCCCCCccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCC-CCCCCCCCcEEEecCCCCC-CC
Q 015448            3 RLSTQQILKDNK-TCDPNSIKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLE-GLKHCVNLKWLSLVQNKLQ-SL   78 (406)
Q Consensus         3 ~Ls~n~i~~~~~-~~~~~~L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~L~~L~~L~Ls~N~l~-~l   78 (406)
                      +|+.+.+..+.. ...+++|++|+|++|.|+.++ .+..+++|++|+|++|.|+.+| .+..+++|++|+|++|++. .+
T Consensus        87 ~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~  166 (328)
T 4fcg_A           87 ELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTEL  166 (328)
T ss_dssp             EEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCC
T ss_pred             EccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCcccc
Confidence            456666665543 455788999999999998887 6788899999999999998886 4888899999999986544 56


Q ss_pred             C-CCC---------CCCCCcEEEcCCCCCCCCc-CCCCCCCCCEEEccCCccCCccc-cCCCCCCcEeeCC---------
Q 015448           79 K-GIE---------GLSKPTVLNVGKNKLRSMD-DVTSVVSLRALILNDNEIVSICK-LDQMKELNTLGMD---------  137 (406)
Q Consensus        79 ~-~l~---------~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~N~i~~l~~-l~~L~~L~~L~Ls---------  137 (406)
                      | .+.         .+++|++|+|++|.|+.+| .+..+++|++|+|++|.++.++. +..+++|++|+|+         
T Consensus       167 p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p  246 (328)
T 4fcg_A          167 PEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYP  246 (328)
T ss_dssp             CSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCC
T ss_pred             ChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhH
Confidence            6 343         3889999999999998887 47888999999999999988874 7888899999888         


Q ss_pred             ---CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCcCC
Q 015448          138 ---SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPI  178 (406)
Q Consensus       138 ---~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~~~  178 (406)
                         ..+++|+.|+|++|.+....+.   .+..+++|+.|+...+
T Consensus       247 ~~~~~l~~L~~L~L~~n~~~~~~p~---~~~~l~~L~~L~L~~n  287 (328)
T 4fcg_A          247 PIFGGRAPLKRLILKDCSNLLTLPL---DIHRLTQLEKLDLRGC  287 (328)
T ss_dssp             CCTTCCCCCCEEECTTCTTCCBCCT---TGGGCTTCCEEECTTC
T ss_pred             HHhcCCCCCCEEECCCCCchhhcch---hhhcCCCCCEEeCCCC
Confidence               5678899999998876554322   2567888888876553

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.74  E-value=5.2e-18  Score=153.64  Aligned_cols=143  Identities=20%  Similarity=0.332  Sum_probs=122.5

Q ss_pred             CCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCC--CCCCCCCCCCcEEEcCC
Q 015448           17 DPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQS--LKGIEGLSKPTVLNVGK   94 (406)
Q Consensus        17 ~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~--l~~l~~l~~L~~L~Ls~   94 (406)
                      .+++|+.|++++|.|+.++.+..+++|++|+|++|.++.++.+..+++|++|+|++|.++.  .+.+..+++|++|+|++
T Consensus        42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~  121 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH  121 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred             hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence            3678999999999999998889999999999999999998889999999999999999996  33799999999999999


Q ss_pred             CCCCC--CcCCCCCCCCCEEEccCCc-cCCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcc
Q 015448           95 NKLRS--MDDVTSVVSLRALILNDNE-IVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLC  171 (406)
Q Consensus        95 N~i~~--l~~l~~l~~L~~L~Ls~N~-i~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~  171 (406)
                      |.|+.  ++.+..+++|++|+|++|. ++.++.+..            +++|+.|+|++|.+..++.     +..+++|+
T Consensus       122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~------------l~~L~~L~l~~n~i~~~~~-----l~~l~~L~  184 (197)
T 4ezg_A          122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKT------------LPELKSLNIQFDGVHDYRG-----IEDFPKLN  184 (197)
T ss_dssp             SBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGG------------CSSCCEEECTTBCCCCCTT-----GGGCSSCC
T ss_pred             CccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcC------------CCCCCEEECCCCCCcChHH-----hccCCCCC
Confidence            99987  3468899999999999998 888875544            4577888888888887763     56688888


Q ss_pred             cccCc
Q 015448          172 IFNAR  176 (406)
Q Consensus       172 ~Ld~~  176 (406)
                      .|+..
T Consensus       185 ~L~l~  189 (197)
T 4ezg_A          185 QLYAF  189 (197)
T ss_dssp             EEEEC
T ss_pred             EEEee
Confidence            76643

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.74  E-value=2.8e-17  Score=158.17  Aligned_cols=157  Identities=25%  Similarity=0.260  Sum_probs=136.2

Q ss_pred             CccccccccCCC--CCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCC-CCCCCCCcEEEecCCCCCCC
Q 015448            2 TRLSTQQILKDN--KTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEG-LKHCVNLKWLSLVQNKLQSL   78 (406)
Q Consensus         2 ~~Ls~n~i~~~~--~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~-l~~L~~L~~L~Ls~N~l~~l   78 (406)
                      ++|+.|.|..+.  .+..+++|+.|+|++|.|+.++....+++|++|+|++|.|+.++. +..+++|++|+|++|.|+.+
T Consensus        36 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l  115 (290)
T 1p9a_G           36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL  115 (290)
T ss_dssp             EECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCC
T ss_pred             EEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCccc
Confidence            356777776653  356789999999999999998877889999999999999999875 78899999999999999988


Q ss_pred             C--CCCCCCCCcEEEcCCCCCCCCcC--CCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC-----------CCCC
Q 015448           79 K--GIEGLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD-----------SYFF  141 (406)
Q Consensus        79 ~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls-----------~~l~  141 (406)
                      +  .|..+++|++|+|++|.|+.++.  +..+++|+.|+|++|.|+.++.  +..+++|++|+|+           ..++
T Consensus       116 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~  195 (290)
T 1p9a_G          116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSH  195 (290)
T ss_dssp             CSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccc
Confidence            7  48999999999999999999874  6789999999999999999885  6789999999998           3456


Q ss_pred             CCCEEEcCCCCCCCchh
Q 015448          142 NLNNLNLQGNPVAEYDK  158 (406)
Q Consensus       142 ~L~~L~Ls~N~i~~~~~  158 (406)
                      +|+.|+|++|++.+.+.
T Consensus       196 ~L~~l~L~~Np~~C~c~  212 (290)
T 1p9a_G          196 LLPFAFLHGNPWLCNCE  212 (290)
T ss_dssp             CCSEEECCSCCBCCSGG
T ss_pred             cCCeEEeCCCCccCcCc
Confidence            79999999999987654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.74  E-value=1.5e-17  Score=169.87  Aligned_cols=168  Identities=26%  Similarity=0.394  Sum_probs=97.7

Q ss_pred             ccccccccCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCC
Q 015448            3 RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIE   82 (406)
Q Consensus         3 ~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l~   82 (406)
                      +|+.+.+........+++|++|++++|.++.++.+..+++|++|+|++|.++.++.+..+++|++|+|++|.+..++.+.
T Consensus       183 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~  262 (466)
T 1o6v_A          183 DISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS  262 (466)
T ss_dssp             ECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGT
T ss_pred             ECcCCcCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhh
Confidence            34445554444445566666666666666666555556666666666666666555556666666666666666555555


Q ss_pred             CCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC----------CCCCCCCEEEcCCCC
Q 015448           83 GLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD----------SYFFNLNNLNLQGNP  152 (406)
Q Consensus        83 ~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls----------~~l~~L~~L~Ls~N~  152 (406)
                      .+++|+.|++++|.++.++.+..+++|+.|+|++|.++.++.+..+++|+.|+|+          ..+++|+.|++++|.
T Consensus       263 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~  342 (466)
T 1o6v_A          263 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNK  342 (466)
T ss_dssp             TCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSC
T ss_pred             cCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCc
Confidence            5666666666666666555555556666666666666555555555566666555          345555555555555


Q ss_pred             CCCchhHHHHHHhcCCCcccccC
Q 015448          153 VAEYDKLAKKVKTLLPNLCIFNA  175 (406)
Q Consensus       153 i~~~~~~~~~~~~~lp~L~~Ld~  175 (406)
                      +..++.     +..+++|+.|+.
T Consensus       343 l~~~~~-----l~~l~~L~~L~l  360 (466)
T 1o6v_A          343 VSDVSS-----LANLTNINWLSA  360 (466)
T ss_dssp             CCCCGG-----GTTCTTCCEEEC
T ss_pred             cCCchh-----hccCCCCCEEeC
Confidence            555532     334555554443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.74  E-value=1.9e-17  Score=167.91  Aligned_cols=157  Identities=23%  Similarity=0.316  Sum_probs=118.9

Q ss_pred             CCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCCCC--CCCCCCCCc
Q 015448           15 TCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPT   88 (406)
Q Consensus        15 ~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~   88 (406)
                      ...+.+++.|+|++|.|+.++  .|..+++|++|+|++|.|+.++  .|..+++|++|+|++|.|+.++  .+..+++|+
T Consensus        60 ~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  139 (440)
T 3zyj_A           60 DGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLK  139 (440)
T ss_dssp             SCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCC
T ss_pred             CCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCc
Confidence            344688999999999999885  7899999999999999999886  4899999999999999999998  389999999


Q ss_pred             EEEcCCCCCCCCc--CCCCCCCCCEEEccC-CccCCccc--cCCCCCCcEeeCC----------CCCCCCCEEEcCCCCC
Q 015448           89 VLNVGKNKLRSMD--DVTSVVSLRALILND-NEIVSICK--LDQMKELNTLGMD----------SYFFNLNNLNLQGNPV  153 (406)
Q Consensus        89 ~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~-N~i~~l~~--l~~L~~L~~L~Ls----------~~l~~L~~L~Ls~N~i  153 (406)
                      +|+|++|.|..++  .+..+++|++|+|++ |.+..++.  +..+++|++|+|+          ..+++|+.|+|++|.|
T Consensus       140 ~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l  219 (440)
T 3zyj_A          140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHL  219 (440)
T ss_dssp             EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCC
T ss_pred             eeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCcc
Confidence            9999999998865  366667777777766 34444442  5566666666665          3455666666666666


Q ss_pred             CCchhHHHHHHhcCCCccccc
Q 015448          154 AEYDKLAKKVKTLLPNLCIFN  174 (406)
Q Consensus       154 ~~~~~~~~~~~~~lp~L~~Ld  174 (406)
                      ..+.+.   .+..+++|+.|+
T Consensus       220 ~~~~~~---~~~~l~~L~~L~  237 (440)
T 3zyj_A          220 SAIRPG---SFQGLMHLQKLW  237 (440)
T ss_dssp             CEECTT---TTTTCTTCCEEE
T ss_pred             CccChh---hhccCccCCEEE
Confidence            655332   234455555444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.73  E-value=6.3e-17  Score=154.23  Aligned_cols=170  Identities=22%  Similarity=0.249  Sum_probs=143.7

Q ss_pred             cccccccCCCCCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCC-CCCC
Q 015448            4 LSTQQILKDNKTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNK-LQSL   78 (406)
Q Consensus         4 Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~-l~~l   78 (406)
                      ++.+.+..+ +...+++|++|+|++|.|+.++  .|..+++|++|+|++|.|+.+.  .|..+++|++|+|++|. +..+
T Consensus        18 c~~~~l~~i-p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~   96 (285)
T 1ozn_A           18 CPQQGLQAV-PVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV   96 (285)
T ss_dssp             CCSSCCSSC-CTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC
T ss_pred             cCcCCcccC-CcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc
Confidence            334444444 3345789999999999999986  6899999999999999999874  48999999999999997 8888


Q ss_pred             C--CCCCCCCCcEEEcCCCCCCCCc--CCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC------------CCC
Q 015448           79 K--GIEGLSKPTVLNVGKNKLRSMD--DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD------------SYF  140 (406)
Q Consensus        79 ~--~l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls------------~~l  140 (406)
                      +  .+..+++|++|+|++|.++.++  .+..+++|++|+|++|.++.++.  +..+++|++|+|+            ..+
T Consensus        97 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  176 (285)
T 1ozn_A           97 DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL  176 (285)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             CHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCc
Confidence            5  5899999999999999999975  37889999999999999998875  7889999999998            467


Q ss_pred             CCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCcC
Q 015448          141 FNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARP  177 (406)
Q Consensus       141 ~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~~  177 (406)
                      ++|+.|+|++|.+..+.+.   .+..+++|+.|+...
T Consensus       177 ~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~  210 (285)
T 1ozn_A          177 HSLDRLLLHQNRVAHVHPH---AFRDLGRLMTLYLFA  210 (285)
T ss_dssp             TTCCEEECCSSCCCEECTT---TTTTCTTCCEEECCS
T ss_pred             cccCEEECCCCcccccCHh---HccCcccccEeeCCC
Confidence            8999999999999887432   256788999877543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.73  E-value=5.1e-18  Score=150.92  Aligned_cols=161  Identities=20%  Similarity=0.320  Sum_probs=104.5

Q ss_pred             CCccccccccCCCCCCCCCCccEEEeeCCCCCCCCCCCCCC-CCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCC
Q 015448            1 MTRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFN-NLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK   79 (406)
Q Consensus         1 m~~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~-~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~   79 (406)
                      |++|+.+.|........+.+|+.|++++|.|+.++.+..+. +|++|+|++|.|+.++.+..+++|++|+|++|.|+.+|
T Consensus         1 m~~lt~~~i~~~~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~   80 (176)
T 1a9n_A            1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIG   80 (176)
T ss_dssp             -CCCCHHHHHTSCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEEC
T ss_pred             CccccHHHHHHHHhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccC
Confidence            78888888877766666777777777777777666444433 66666666666665544555555555555555555444


Q ss_pred             -CCCCCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchh
Q 015448           80 -GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDK  158 (406)
Q Consensus        80 -~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~  158 (406)
                       .+                     +..+++|++|+|++|.|+.++.+..+.         .+++|+.|+|++|+++.++.
T Consensus        81 ~~~---------------------~~~l~~L~~L~L~~N~i~~~~~~~~l~---------~l~~L~~L~l~~N~i~~~~~  130 (176)
T 1a9n_A           81 EGL---------------------DQALPDLTELILTNNSLVELGDLDPLA---------SLKSLTYLCILRNPVTNKKH  130 (176)
T ss_dssp             SCH---------------------HHHCTTCCEEECCSCCCCCGGGGGGGG---------GCTTCCEEECCSSGGGGSTT
T ss_pred             cch---------------------hhcCCCCCEEECCCCcCCcchhhHhhh---------cCCCCCEEEecCCCCCCcHh
Confidence             21                     244555556666666555554422221         45577888888888887777


Q ss_pred             HHHHHHhcCCCcccccCcCCChhhhhhhhhhhc
Q 015448          159 LAKKVKTLLPNLCIFNARPIDRITKNEKDNIVD  191 (406)
Q Consensus       159 ~~~~~~~~lp~L~~Ld~~~~~~~~~~~~~~~l~  191 (406)
                      ++..++..+|+|+.|+...+...++..+..++.
T Consensus       131 ~~~~~~~~l~~L~~Ld~~~n~~~~~~~~~~~~~  163 (176)
T 1a9n_A          131 YRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFK  163 (176)
T ss_dssp             HHHHHHHHCTTCSEETTEECCHHHHHHHHHTTC
T ss_pred             HHHHHHHHCCccceeCCCcCCHHHHHHHHHHHh
Confidence            766677888999999888888777776665554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.73  E-value=2.6e-17  Score=168.05  Aligned_cols=158  Identities=25%  Similarity=0.354  Sum_probs=104.2

Q ss_pred             CCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCCCCCCCcEEEcC
Q 015448           14 KTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVG   93 (406)
Q Consensus        14 ~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls   93 (406)
                      +...+++|+.|++++|.++.++.+..+++|++|++++|.++.++++..+++|++|+|++|.++.++.+..+++|+.|+++
T Consensus       172 ~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~  251 (466)
T 1o6v_A          172 PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA  251 (466)
T ss_dssp             GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECC
T ss_pred             hhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECC
Confidence            34556667777777777666666666667777777777666665566666677777777766666666666677777777


Q ss_pred             CCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC----------CCCCCCCEEEcCCCCCCCchhHHHHH
Q 015448           94 KNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD----------SYFFNLNNLNLQGNPVAEYDKLAKKV  163 (406)
Q Consensus        94 ~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls----------~~l~~L~~L~Ls~N~i~~~~~~~~~~  163 (406)
                      +|.+..++.+..+++|+.|++++|.++.++.+..+++|+.|+|+          ..+++|+.|+|++|.+....+     
T Consensus       252 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-----  326 (466)
T 1o6v_A          252 NNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-----  326 (466)
T ss_dssp             SSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG-----
T ss_pred             CCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh-----
Confidence            77766665566666777777777776666666666667776666          445666777777776666654     


Q ss_pred             HhcCCCcccccCc
Q 015448          164 KTLLPNLCIFNAR  176 (406)
Q Consensus       164 ~~~lp~L~~Ld~~  176 (406)
                      +..+++|+.|+..
T Consensus       327 ~~~l~~L~~L~l~  339 (466)
T 1o6v_A          327 VSSLTKLQRLFFY  339 (466)
T ss_dssp             GGGCTTCCEEECC
T ss_pred             hccCccCCEeECC
Confidence            3456666655543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=2.4e-18  Score=163.36  Aligned_cols=157  Identities=23%  Similarity=0.394  Sum_probs=140.7

Q ss_pred             CCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCCCCCCCcEEEcC
Q 015448           14 KTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVG   93 (406)
Q Consensus        14 ~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls   93 (406)
                      +...+..+..++++++.+++++.+..+++|++|++++|.|+.++.+..+++|++|+|++|.|+.++.+..+++|++|+|+
T Consensus        14 pd~~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~   93 (263)
T 1xeu_A           14 PDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVN   93 (263)
T ss_dssp             CSHHHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECC
T ss_pred             CCHHHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECC
Confidence            33446677888999999999888889999999999999999999999999999999999999999889999999999999


Q ss_pred             CCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC----------CCCCCCCEEEcCCCCCCCchhHHHHH
Q 015448           94 KNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD----------SYFFNLNNLNLQGNPVAEYDKLAKKV  163 (406)
Q Consensus        94 ~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls----------~~l~~L~~L~Ls~N~i~~~~~~~~~~  163 (406)
                      +|.|+.++.+.. ++|++|+|++|.|+.++.+..+++|+.|+|+          ..+++|+.|+|++|.|..+..     
T Consensus        94 ~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~~~-----  167 (263)
T 1xeu_A           94 RNRLKNLNGIPS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGG-----  167 (263)
T ss_dssp             SSCCSCCTTCCC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBCTT-----
T ss_pred             CCccCCcCcccc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcchHH-----
Confidence            999999987766 9999999999999999989999999999998          578899999999999988843     


Q ss_pred             HhcCCCcccccCc
Q 015448          164 KTLLPNLCIFNAR  176 (406)
Q Consensus       164 ~~~lp~L~~Ld~~  176 (406)
                      +..+++|+.|+..
T Consensus       168 l~~l~~L~~L~l~  180 (263)
T 1xeu_A          168 LTRLKKVNWIDLT  180 (263)
T ss_dssp             STTCCCCCEEEEE
T ss_pred             hccCCCCCEEeCC
Confidence            5678888877643

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.71  E-value=4.6e-17  Score=154.44  Aligned_cols=119  Identities=27%  Similarity=0.370  Sum_probs=55.0

Q ss_pred             CCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEc
Q 015448           19 NSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNV   92 (406)
Q Consensus        19 ~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~L   92 (406)
                      ++|++|+|++|.|+.++  .|..+++|++|+|++|.|+.++.  |..+++|++|+|++|.++.++  .+..+++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            34555555555554443  34444555555555555444432  444455555555555544433  2444444555555


Q ss_pred             CCCCCCCCc--CCCCCCCCCEEEccCCccCCc--c-ccCCCCCCcEeeCC
Q 015448           93 GKNKLRSMD--DVTSVVSLRALILNDNEIVSI--C-KLDQMKELNTLGMD  137 (406)
Q Consensus        93 s~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l--~-~l~~L~~L~~L~Ls  137 (406)
                      ++|.+..++  .+..+++|++|+|++|.++.+  + .+..+++|++|+|+
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls  157 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS  157 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECC
Confidence            444444433  244444444444444444432  2 14444444444444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.71  E-value=1.2e-16  Score=162.55  Aligned_cols=157  Identities=23%  Similarity=0.291  Sum_probs=120.4

Q ss_pred             CCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCCCC--CCCCCCCCcE
Q 015448           16 CDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTV   89 (406)
Q Consensus        16 ~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~   89 (406)
                      ..+++|+.|+|++|.|+.++  .|..+++|++|+|++|.|+.++  .|..+++|++|+|++|.|+.++  .+..+++|++
T Consensus        72 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  151 (452)
T 3zyi_A           72 GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE  151 (452)
T ss_dssp             CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCE
T ss_pred             CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCE
Confidence            44678999999999999874  7899999999999999999885  4899999999999999999988  3889999999


Q ss_pred             EEcCCCCCCCCc--CCCCCCCCCEEEccC-CccCCccc--cCCCCCCcEeeCC----------CCCCCCCEEEcCCCCCC
Q 015448           90 LNVGKNKLRSMD--DVTSVVSLRALILND-NEIVSICK--LDQMKELNTLGMD----------SYFFNLNNLNLQGNPVA  154 (406)
Q Consensus        90 L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~-N~i~~l~~--l~~L~~L~~L~Ls----------~~l~~L~~L~Ls~N~i~  154 (406)
                      |+|++|.|+.++  .+..+++|+.|+|++ |.+..++.  +..+++|++|+|+          ..+++|+.|+|++|.+.
T Consensus       152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~  231 (452)
T 3zyi_A          152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFP  231 (452)
T ss_dssp             EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCS
T ss_pred             EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCc
Confidence            999999998876  366677777777776 44554442  5666666776666          34556666677766666


Q ss_pred             CchhHHHHHHhcCCCcccccC
Q 015448          155 EYDKLAKKVKTLLPNLCIFNA  175 (406)
Q Consensus       155 ~~~~~~~~~~~~lp~L~~Ld~  175 (406)
                      .+.+.   .+..+++|+.|+.
T Consensus       232 ~~~~~---~~~~l~~L~~L~L  249 (452)
T 3zyi_A          232 EIRPG---SFHGLSSLKKLWV  249 (452)
T ss_dssp             EECGG---GGTTCTTCCEEEC
T ss_pred             ccCcc---cccCccCCCEEEe
Confidence            65432   2445566665543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.70  E-value=5.3e-17  Score=158.87  Aligned_cols=170  Identities=19%  Similarity=0.258  Sum_probs=141.3

Q ss_pred             ccccccccCCC-CCCCCCCccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCC-CCCCC-CC---------CCCCCcEEE
Q 015448            3 RLSTQQILKDN-KTCDPNSIKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNL-TSLEG-LK---------HCVNLKWLS   69 (406)
Q Consensus         3 ~Ls~n~i~~~~-~~~~~~~L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l-~~l~~-l~---------~L~~L~~L~   69 (406)
                      +|+.|.+..+. .+..+++|++|+|++|.|+.++ .+..+++|++|+|++|.+ ..+|. +.         .+++|++|+
T Consensus       110 ~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~  189 (328)
T 4fcg_A          110 TIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR  189 (328)
T ss_dssp             EEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEE
T ss_pred             ECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEE
Confidence            56677777554 2566899999999999999888 788999999999999764 44553 33         499999999


Q ss_pred             ecCCCCCCCC-CCCCCCCCcEEEcCCCCCCCCc-CCCCCCCCCEEEccCCccCCc-c-ccCCCCCCcEeeCC--------
Q 015448           70 LVQNKLQSLK-GIEGLSKPTVLNVGKNKLRSMD-DVTSVVSLRALILNDNEIVSI-C-KLDQMKELNTLGMD--------  137 (406)
Q Consensus        70 Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~N~i~~l-~-~l~~L~~L~~L~Ls--------  137 (406)
                      |++|.|+.+| .+..+++|++|+|++|.++.++ .+..+++|++|+|++|.+... + .+..+++|++|+|+        
T Consensus       190 L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~  269 (328)
T 4fcg_A          190 LEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL  269 (328)
T ss_dssp             EEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBC
T ss_pred             CcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhc
Confidence            9999999998 6899999999999999999987 588999999999999887654 4 38889999999998        


Q ss_pred             ----CCCCCCCEEEcCCCCCCCc-hhHHHHHHhcCCCcccccCc
Q 015448          138 ----SYFFNLNNLNLQGNPVAEY-DKLAKKVKTLLPNLCIFNAR  176 (406)
Q Consensus       138 ----~~l~~L~~L~Ls~N~i~~~-~~~~~~~~~~lp~L~~Ld~~  176 (406)
                          ..+++|+.|+|++|++... |.    .+..+++|+.++..
T Consensus       270 p~~~~~l~~L~~L~L~~n~~~~~iP~----~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          270 PLDIHRLTQLEKLDLRGCVNLSRLPS----LIAQLPANCIILVP  309 (328)
T ss_dssp             CTTGGGCTTCCEEECTTCTTCCCCCG----GGGGSCTTCEEECC
T ss_pred             chhhhcCCCCCEEeCCCCCchhhccH----HHhhccCceEEeCC
Confidence                5789999999999887554 43    36778888877544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.70  E-value=3.8e-17  Score=151.91  Aligned_cols=157  Identities=20%  Similarity=0.246  Sum_probs=132.8

Q ss_pred             CCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCC-CCCCC--CCCCCCCCcEEEecC-CCCCCCC--CCCCCCCCc
Q 015448           17 DPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNN-LTSLE--GLKHCVNLKWLSLVQ-NKLQSLK--GIEGLSKPT   88 (406)
Q Consensus        17 ~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~-l~~l~--~l~~L~~L~~L~Ls~-N~l~~l~--~l~~l~~L~   88 (406)
                      .+.+|+.|+|++|.|+.++  .|..+++|++|+|++|. ++.++  .|..+++|++|+|++ |.|+.++  .+..+++|+
T Consensus        29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~  108 (239)
T 2xwt_C           29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK  108 (239)
T ss_dssp             CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred             CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence            5668999999999999886  68899999999999997 88886  478899999999998 9999887  478899999


Q ss_pred             EEEcCCCCCCCCcCCCCCCCCC---EEEccCC-ccCCccc--cCCCCCCc-EeeCC-----------CCCCCCCEEEcCC
Q 015448           89 VLNVGKNKLRSMDDVTSVVSLR---ALILNDN-EIVSICK--LDQMKELN-TLGMD-----------SYFFNLNNLNLQG  150 (406)
Q Consensus        89 ~L~Ls~N~i~~l~~l~~l~~L~---~L~Ls~N-~i~~l~~--l~~L~~L~-~L~Ls-----------~~l~~L~~L~Ls~  150 (406)
                      +|+|++|.++.+|.+..+++|+   +|++++| .++.++.  +..+++|+ +|+++           -..++|+.|+|++
T Consensus       109 ~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~  188 (239)
T 2xwt_C          109 FLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNK  188 (239)
T ss_dssp             EEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTT
T ss_pred             EEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCC
Confidence            9999999999998888888888   9999999 9988875  88899999 99987           1236799999999


Q ss_pred             CC-CCCchhHHHHHHhcC-CCcccccCc
Q 015448          151 NP-VAEYDKLAKKVKTLL-PNLCIFNAR  176 (406)
Q Consensus       151 N~-i~~~~~~~~~~~~~l-p~L~~Ld~~  176 (406)
                      |+ +..++..   .+..+ ++|+.|+..
T Consensus       189 n~~l~~i~~~---~~~~l~~~L~~L~l~  213 (239)
T 2xwt_C          189 NKYLTVIDKD---AFGGVYSGPSLLDVS  213 (239)
T ss_dssp             CTTCCEECTT---TTTTCSBCCSEEECT
T ss_pred             CCCcccCCHH---HhhccccCCcEEECC
Confidence            95 8887643   25667 888877654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.70  E-value=3.4e-16  Score=155.76  Aligned_cols=96  Identities=22%  Similarity=0.292  Sum_probs=54.7

Q ss_pred             cccccccCCC--CCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCC
Q 015448            4 LSTQQILKDN--KTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQS   77 (406)
Q Consensus         4 Ls~n~i~~~~--~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~   77 (406)
                      |+.+.|..+.  .+..+++|++|+|++|.++.++  .+..+++|++|+|++|.|+.++.  |..+++|++|+|++|.+..
T Consensus        76 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~  155 (390)
T 3o6n_A           76 LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER  155 (390)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred             CCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc
Confidence            4444444442  2344556666666666666553  45566666666666666666553  4556666666666666665


Q ss_pred             CC--CCCCCCCCcEEEcCCCCCCC
Q 015448           78 LK--GIEGLSKPTVLNVGKNKLRS   99 (406)
Q Consensus        78 l~--~l~~l~~L~~L~Ls~N~i~~   99 (406)
                      ++  .+..+++|++|+|++|.++.
T Consensus       156 ~~~~~~~~l~~L~~L~l~~n~l~~  179 (390)
T 3o6n_A          156 IEDDTFQATTSLQNLQLSSNRLTH  179 (390)
T ss_dssp             CCTTTTSSCTTCCEEECCSSCCSB
T ss_pred             cChhhccCCCCCCEEECCCCcCCc
Confidence            54  25556666666666665554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.69  E-value=4.1e-16  Score=159.59  Aligned_cols=163  Identities=28%  Similarity=0.325  Sum_probs=91.0

Q ss_pred             ccccccccCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCC
Q 015448            3 RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIE   82 (406)
Q Consensus         3 ~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l~   82 (406)
                      +|+.+.+..+..+..+++|++|+|++|.|+.++ +..+++|++|+|++|.|+.++ +..+++|++|+|++|.++.++ +.
T Consensus        48 ~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~-~~  124 (457)
T 3bz5_A           48 DCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD-VS  124 (457)
T ss_dssp             ECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC-CT
T ss_pred             EccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec-CC
Confidence            344455554444444566666666666666654 555566666666666665553 555566666666666555554 55


Q ss_pred             CCCCCcEEEcCCCCCCCCc---------------------CCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC----
Q 015448           83 GLSKPTVLNVGKNKLRSMD---------------------DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD----  137 (406)
Q Consensus        83 ~l~~L~~L~Ls~N~i~~l~---------------------~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls----  137 (406)
                      .+++|++|++++|.|+.++                     .+..+++|++|++++|.++.++ +..+++|+.|+++    
T Consensus       125 ~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l  203 (457)
T 3bz5_A          125 QNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNI  203 (457)
T ss_dssp             TCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSCC
T ss_pred             CCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec-cccCCCCCEEECcCCcC
Confidence            5555555555555555442                     2334445555555555555554 5555556666555    


Q ss_pred             -----CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccC
Q 015448          138 -----SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNA  175 (406)
Q Consensus       138 -----~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~  175 (406)
                           ..+++|+.|+|++|.++.++      +..+++|+.|+.
T Consensus       204 ~~~~l~~l~~L~~L~Ls~N~l~~ip------~~~l~~L~~L~l  240 (457)
T 3bz5_A          204 TKLDLNQNIQLTFLDCSSNKLTEID------VTPLTQLTYFDC  240 (457)
T ss_dssp             SCCCCTTCTTCSEEECCSSCCSCCC------CTTCTTCSEEEC
T ss_pred             CeeccccCCCCCEEECcCCcccccC------ccccCCCCEEEe
Confidence                 34566666666666666654      344566665543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.69  E-value=5.5e-16  Score=158.67  Aligned_cols=160  Identities=22%  Similarity=0.323  Sum_probs=119.3

Q ss_pred             ccccccccCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCC---
Q 015448            3 RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK---   79 (406)
Q Consensus         3 ~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~---   79 (406)
                      +|+.|++..+ +.+.+++|++|++++|.|+.++ +..+++|++|+|++|.++.++ +..+++|++|++++|.|+.++   
T Consensus        70 ~Ls~n~l~~~-~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~l~~  146 (457)
T 3bz5_A           70 ICTSNNITTL-DLSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEIDVSH  146 (457)
T ss_dssp             ECCSSCCSCC-CCTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCCCTT
T ss_pred             EccCCcCCeE-ccccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec-CCCCCcCCEEECCCCccceecccc
Confidence            4555666555 3556677777777777777664 566667777777777666654 566666666666666655432   


Q ss_pred             ------------------CCCCCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC----
Q 015448           80 ------------------GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD----  137 (406)
Q Consensus        80 ------------------~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls----  137 (406)
                                        .+..+++|++|++++|.|+.++ +..+++|+.|++++|.++.+ .+..+++|++|+++    
T Consensus       147 l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~~~-~l~~l~~L~~L~Ls~N~l  224 (457)
T 3bz5_A          147 NTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKL  224 (457)
T ss_dssp             CTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSCCSCC-CCTTCTTCSEEECCSSCC
T ss_pred             CCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec-cccCCCCCEEECcCCcCCee-ccccCCCCCEEECcCCcc
Confidence                              3556778889999999999887 88899999999999999998 48889999999998    


Q ss_pred             -----CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccc
Q 015448          138 -----SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIF  173 (406)
Q Consensus       138 -----~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~L  173 (406)
                           ..+++|+.|+|++|.++.++.      ..+++|+.|
T Consensus       225 ~~ip~~~l~~L~~L~l~~N~l~~~~~------~~l~~L~~L  259 (457)
T 3bz5_A          225 TEIDVTPLTQLTYFDCSVNPLTELDV------STLSKLTTL  259 (457)
T ss_dssp             SCCCCTTCTTCSEEECCSSCCSCCCC------TTCTTCCEE
T ss_pred             cccCccccCCCCEEEeeCCcCCCcCH------HHCCCCCEE
Confidence                 578899999999999998762      345655544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.69  E-value=5.8e-16  Score=145.21  Aligned_cols=157  Identities=25%  Similarity=0.379  Sum_probs=135.5

Q ss_pred             CCccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcC
Q 015448           19 NSIKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVG   93 (406)
Q Consensus        19 ~~L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls   93 (406)
                      ...++++++++.++.+| .+.  ++|+.|+|++|.|+.++.  |..+++|++|+|++|.|+.++  .+..+++|++|+|+
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            46788999999999998 343  689999999999998863  899999999999999999887  38999999999999


Q ss_pred             CCCCCCCc--CCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC------------CCCCCCCEEEcCCCCCCCch
Q 015448           94 KNKLRSMD--DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD------------SYFFNLNNLNLQGNPVAEYD  157 (406)
Q Consensus        94 ~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls------------~~l~~L~~L~Ls~N~i~~~~  157 (406)
                      +|.|+.++  .+..+++|++|+|++|.|+.++.  +..+++|++|+|+            ..+++|+.|+|++|.+..++
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence            99999986  47889999999999999999886  7889999999998            46789999999999999887


Q ss_pred             hHHHHHHhcCCCcccccC--cCCCh
Q 015448          158 KLAKKVKTLLPNLCIFNA--RPIDR  180 (406)
Q Consensus       158 ~~~~~~~~~lp~L~~Ld~--~~~~~  180 (406)
                      ..   .+..+++|+.|+.  +++..
T Consensus       172 ~~---~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          172 HG---AFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             TT---TTTTCTTCCEEECCSCCBCT
T ss_pred             HH---HHhCCCCCCEEEeeCCceeC
Confidence            53   2567888887664  45443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.69  E-value=2.9e-16  Score=165.52  Aligned_cols=97  Identities=22%  Similarity=0.290  Sum_probs=64.1

Q ss_pred             ccccccccCCC--CCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCC
Q 015448            3 RLSTQQILKDN--KTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQ   76 (406)
Q Consensus         3 ~Ls~n~i~~~~--~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~   76 (406)
                      +|+.+.|..+.  .+..+++|++|+|++|.|+.++  .|..+++|++|+|++|.|+.++.  |..+++|++|+|++|.|+
T Consensus        81 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~  160 (597)
T 3oja_B           81 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE  160 (597)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC
Confidence            44555555553  3445667777777777777665  45677777777777777776654  566777777777777777


Q ss_pred             CCC--CCCCCCCCcEEEcCCCCCCC
Q 015448           77 SLK--GIEGLSKPTVLNVGKNKLRS   99 (406)
Q Consensus        77 ~l~--~l~~l~~L~~L~Ls~N~i~~   99 (406)
                      .++  .+..+++|++|+|++|.|+.
T Consensus       161 ~~~~~~~~~l~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          161 RIEDDTFQATTSLQNLQLSSNRLTH  185 (597)
T ss_dssp             BCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred             CCChhhhhcCCcCcEEECcCCCCCC
Confidence            655  36666777777777766654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.69  E-value=7.4e-17  Score=145.99  Aligned_cols=141  Identities=17%  Similarity=0.269  Sum_probs=121.5

Q ss_pred             ccccccccCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCC--CCCCCCCCCCcEEEecCCCCCC-CC
Q 015448            3 RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTS--LEGLKHCVNLKWLSLVQNKLQS-LK   79 (406)
Q Consensus         3 ~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~--l~~l~~L~~L~~L~Ls~N~l~~-l~   79 (406)
                      +|+.+.|..+.....+++|++|++++|.++.++.+..+++|++|+|++|.++.  .+.+..+++|++|+|++|.++. .+
T Consensus        50 ~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~  129 (197)
T 4ezg_A           50 TLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL  129 (197)
T ss_dssp             EEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGH
T ss_pred             eccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhH
Confidence            46677777777777789999999999999999899999999999999999997  4569999999999999999996 33


Q ss_pred             -CCCCCCCCcEEEcCCCC-CCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCC
Q 015448           80 -GIEGLSKPTVLNVGKNK-LRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAE  155 (406)
Q Consensus        80 -~l~~l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~  155 (406)
                       .+..+++|++|+|++|. ++.++.+..+++|++|++++|.|+.++.+.            .+++|+.|++++|+|..
T Consensus       130 ~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~~l~------------~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          130 TKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIE------------DFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             HHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCTTGG------------GCSSCCEEEECBC----
T ss_pred             HHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChHHhc------------cCCCCCEEEeeCcccCC
Confidence             68899999999999998 999998999999999999999999877544            44688899999998854

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.68  E-value=2e-16  Score=143.94  Aligned_cols=139  Identities=27%  Similarity=0.373  Sum_probs=116.0

Q ss_pred             ccccccCCCCCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCCCCC
Q 015448            5 STQQILKDNKTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSLKG   80 (406)
Q Consensus         5 s~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~l~~   80 (406)
                      +.+.+..+. ...+++|++|+|++|.|+.++  .+..+++|++|+|++|.|+.++.  |..+++|++|+|++|.|+.++.
T Consensus        15 ~~~~l~~~p-~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~   93 (208)
T 2o6s_A           15 YSQGRTSVP-TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPN   93 (208)
T ss_dssp             CSSCCSSCC-SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             cCCCccCCC-CCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCH
Confidence            334444433 344678999999999999887  57899999999999999998875  7889999999999999998883


Q ss_pred             --CCCCCCCcEEEcCCCCCCCCcC--CCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCCCCCCCCCEEEcCCCCCC
Q 015448           81 --IEGLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDSYFFNLNNLNLQGNPVA  154 (406)
Q Consensus        81 --l~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~  154 (406)
                        +..+++|++|+|++|.|+.++.  +..+++|++|+|++|.|+.++.  +.            .+++|+.|+|++|++.
T Consensus        94 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~------------~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A           94 GVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFD------------RLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT------------TCTTCCEEECCSCCBC
T ss_pred             hHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhc------------cCCCccEEEecCCCee
Confidence              7899999999999999999864  7889999999999999988765  33            4568888888988876


Q ss_pred             Cc
Q 015448          155 EY  156 (406)
Q Consensus       155 ~~  156 (406)
                      +.
T Consensus       162 ~~  163 (208)
T 2o6s_A          162 CT  163 (208)
T ss_dssp             CC
T ss_pred             cC
Confidence            53

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.68  E-value=3.7e-16  Score=144.29  Aligned_cols=144  Identities=23%  Similarity=0.357  Sum_probs=118.1

Q ss_pred             ccccccccCCCCCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCCC
Q 015448            3 RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSL   78 (406)
Q Consensus         3 ~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~l   78 (406)
                      +++.+.+..+.. ..+++|+.|+|++|.|+.++  .|..+++|++|+|++|.|+.+.  .|..+++|++|+|++|.|+.+
T Consensus        17 ~c~~~~l~~iP~-~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l   95 (220)
T 2v9t_B           17 DCRGKGLTEIPT-NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL   95 (220)
T ss_dssp             ECTTSCCSSCCS-SCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC
T ss_pred             EcCCCCcCcCCC-ccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc
Confidence            344455554432 33578999999999999886  7888999999999999999873  488999999999999999998


Q ss_pred             CC--CCCCCCCcEEEcCCCCCCCCc--CCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCCCCCCCCCEEEcCCCC
Q 015448           79 KG--IEGLSKPTVLNVGKNKLRSMD--DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDSYFFNLNNLNLQGNP  152 (406)
Q Consensus        79 ~~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~  152 (406)
                      |.  |..+++|++|+|++|.|+.++  .+..+++|++|+|++|.|+.++.  +.            .+++|+.|+|++|+
T Consensus        96 ~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~------------~l~~L~~L~L~~N~  163 (220)
T 2v9t_B           96 PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS------------PLRAIQTMHLAQNP  163 (220)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT------------TCTTCCEEECCSSC
T ss_pred             CHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHh------------CCCCCCEEEeCCCC
Confidence            83  788999999999999999874  47889999999999999988764  33            45688999999999


Q ss_pred             CCCchhH
Q 015448          153 VAEYDKL  159 (406)
Q Consensus       153 i~~~~~~  159 (406)
                      +.+.+.+
T Consensus       164 ~~c~c~l  170 (220)
T 2v9t_B          164 FICDCHL  170 (220)
T ss_dssp             EECSGGG
T ss_pred             cCCCCcc
Confidence            9887654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.68  E-value=8.9e-17  Score=149.42  Aligned_cols=168  Identities=15%  Similarity=0.216  Sum_probs=137.5

Q ss_pred             ccccccccCCCC--CCCCCCccEEEeeCCC-CCCCC--CCCCCCCCcEEEccC-CCCCCCC--CCCCCCCCcEEEecCCC
Q 015448            3 RLSTQQILKDNK--TCDPNSIKSLSLTHKA-LSDVS--CLTDFNNLERLDLSS-NNLTSLE--GLKHCVNLKWLSLVQNK   74 (406)
Q Consensus         3 ~Ls~n~i~~~~~--~~~~~~L~~L~Ls~n~-l~~i~--~l~~l~~L~~L~Ls~-N~l~~l~--~l~~L~~L~~L~Ls~N~   74 (406)
                      +|+.++|..+.+  +..+++|++|+|++|. ++.++  .|..+++|++|+|++ |.|+.++  .|..+++|++|+|++|.
T Consensus        37 ~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~  116 (239)
T 2xwt_C           37 KLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG  116 (239)
T ss_dssp             EEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC
T ss_pred             EEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC
Confidence            566777777654  5568899999999997 88886  678899999999998 9999886  37789999999999999


Q ss_pred             CCCCCCCCCCCCCc---EEEcCCC-CCCCCcC--CCCCCCCC-EEEccCCccCCccc-cCCCCCCcEeeCC---------
Q 015448           75 LQSLKGIEGLSKPT---VLNVGKN-KLRSMDD--VTSVVSLR-ALILNDNEIVSICK-LDQMKELNTLGMD---------  137 (406)
Q Consensus        75 l~~l~~l~~l~~L~---~L~Ls~N-~i~~l~~--l~~l~~L~-~L~Ls~N~i~~l~~-l~~L~~L~~L~Ls---------  137 (406)
                      ++.+|.+..+++|+   +|++++| .|+.++.  +..+++|+ +|++++|.++.++. ....++|+.|+|+         
T Consensus       117 l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~  196 (239)
T 2xwt_C          117 LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVID  196 (239)
T ss_dssp             CCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEEC
T ss_pred             CccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCC
Confidence            99999888888888   9999999 8988763  78899999 99999999988774 2233778888876         


Q ss_pred             ----CCC-CCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCc
Q 015448          138 ----SYF-FNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNAR  176 (406)
Q Consensus       138 ----~~l-~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~  176 (406)
                          ..+ ++|+.|+|++|.++.++..      .+++|+.|+..
T Consensus       197 ~~~~~~l~~~L~~L~l~~N~l~~l~~~------~~~~L~~L~l~  234 (239)
T 2xwt_C          197 KDAFGGVYSGPSLLDVSQTSVTALPSK------GLEHLKELIAR  234 (239)
T ss_dssp             TTTTTTCSBCCSEEECTTCCCCCCCCT------TCTTCSEEECT
T ss_pred             HHHhhccccCCcEEECCCCccccCChh------HhccCceeecc
Confidence                456 8899999999999988753      46666666543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.68  E-value=6.5e-17  Score=155.56  Aligned_cols=157  Identities=22%  Similarity=0.276  Sum_probs=97.7

Q ss_pred             CCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCC----CCCCCCCCcEEEecCCCCCCCC-CCCCCCCCc
Q 015448           16 CDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE----GLKHCVNLKWLSLVQNKLQSLK-GIEGLSKPT   88 (406)
Q Consensus        16 ~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~----~l~~L~~L~~L~Ls~N~l~~l~-~l~~l~~L~   88 (406)
                      ..+++|++|+|++|.|+.++  .|..+++|++|+|++|.|+.+.    .+..+++|++|+|++|.+..++ .+..+++|+
T Consensus        25 ~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~  104 (306)
T 2z66_A           25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE  104 (306)
T ss_dssp             CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCC
T ss_pred             CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCC
Confidence            34567888888888887776  4677788888888888777541    2445666777777777666665 466666666


Q ss_pred             EEEcCCCCCCCCc---CCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC-------------CCCCCCCEEEcCC
Q 015448           89 VLNVGKNKLRSMD---DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD-------------SYFFNLNNLNLQG  150 (406)
Q Consensus        89 ~L~Ls~N~i~~l~---~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls-------------~~l~~L~~L~Ls~  150 (406)
                      +|+|++|.++.++   .+..+++|++|++++|.+..+..  +..+++|++|+|+             ..+++|+.|+|++
T Consensus       105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~  184 (306)
T 2z66_A          105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ  184 (306)
T ss_dssp             EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred             EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCC
Confidence            6666666666543   25556666666666666654432  5556666666665             3455666666666


Q ss_pred             CCCCCchhHHHHHHhcCCCcccccC
Q 015448          151 NPVAEYDKLAKKVKTLLPNLCIFNA  175 (406)
Q Consensus       151 N~i~~~~~~~~~~~~~lp~L~~Ld~  175 (406)
                      |.+..+.+.   .+..+++|+.|+.
T Consensus       185 n~l~~~~~~---~~~~l~~L~~L~L  206 (306)
T 2z66_A          185 CQLEQLSPT---AFNSLSSLQVLNM  206 (306)
T ss_dssp             SCCCEECTT---TTTTCTTCCEEEC
T ss_pred             CCcCCcCHH---HhcCCCCCCEEEC
Confidence            666555321   1344555655543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.68  E-value=6.3e-16  Score=153.84  Aligned_cols=77  Identities=22%  Similarity=0.274  Sum_probs=64.8

Q ss_pred             ccccccccCCCC--CCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCC
Q 015448            3 RLSTQQILKDNK--TCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQ   76 (406)
Q Consensus         3 ~Ls~n~i~~~~~--~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~   76 (406)
                      +|+.|.+..+.+  +..+++|++|+|++|.|+.++  .|..+++|++|+|++|.++.+++  +..+++|++|+|++|.++
T Consensus        99 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  178 (390)
T 3o6n_A           99 YMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT  178 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred             ECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence            567777777654  456899999999999999987  47899999999999999998853  888999999999999988


Q ss_pred             CCC
Q 015448           77 SLK   79 (406)
Q Consensus        77 ~l~   79 (406)
                      .++
T Consensus       179 ~~~  181 (390)
T 3o6n_A          179 HVD  181 (390)
T ss_dssp             BCC
T ss_pred             ccc
Confidence            654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.68  E-value=4.2e-16  Score=164.29  Aligned_cols=157  Identities=22%  Similarity=0.250  Sum_probs=117.9

Q ss_pred             CccccccccCCCC--CCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCC
Q 015448            2 TRLSTQQILKDNK--TCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKL   75 (406)
Q Consensus         2 ~~Ls~n~i~~~~~--~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l   75 (406)
                      ++|+.|.|..+.+  ++.+++|++|+|++|.|+.++  .|..+++|++|+|++|.|+.++  .|..+++|++|+|++|.|
T Consensus       104 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  183 (597)
T 3oja_B          104 LYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL  183 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC
T ss_pred             EECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC
Confidence            3567777777754  456899999999999999987  4789999999999999999875  388899999999999988


Q ss_pred             CCCC--CCCCC-------------------------------------CCCcEEEcCCCCCCCCcCCCCCCCCCEEEccC
Q 015448           76 QSLK--GIEGL-------------------------------------SKPTVLNVGKNKLRSMDDVTSVVSLRALILND  116 (406)
Q Consensus        76 ~~l~--~l~~l-------------------------------------~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~  116 (406)
                      +.++  .+..+                                     ++|+.|+|++|.++.++.+..+++|+.|+|++
T Consensus       184 ~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~  263 (597)
T 3oja_B          184 THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSY  263 (597)
T ss_dssp             SBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCS
T ss_pred             CCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCC
Confidence            7654  12111                                     24556666666666655667777888888888


Q ss_pred             CccCCcc--ccCCCCCCcEeeCC-----------CCCCCCCEEEcCCCCCCCchh
Q 015448          117 NEIVSIC--KLDQMKELNTLGMD-----------SYFFNLNNLNLQGNPVAEYDK  158 (406)
Q Consensus       117 N~i~~l~--~l~~L~~L~~L~Ls-----------~~l~~L~~L~Ls~N~i~~~~~  158 (406)
                      |.|+.+.  .+..+++|++|+|+           ..+++|+.|+|++|.+..++.
T Consensus       264 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~  318 (597)
T 3oja_B          264 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVER  318 (597)
T ss_dssp             SCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGG
T ss_pred             CccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCc
Confidence            8877663  36777788888777           347788888888888877654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.67  E-value=1.2e-16  Score=153.63  Aligned_cols=174  Identities=18%  Similarity=0.207  Sum_probs=146.6

Q ss_pred             CccccccccCCCC--CCCCCCccEEEeeCCCCCCC---C-CCCCCCCCcEEEccCCCCCCCCC-CCCCCCCcEEEecCCC
Q 015448            2 TRLSTQQILKDNK--TCDPNSIKSLSLTHKALSDV---S-CLTDFNNLERLDLSSNNLTSLEG-LKHCVNLKWLSLVQNK   74 (406)
Q Consensus         2 ~~Ls~n~i~~~~~--~~~~~~L~~L~Ls~n~l~~i---~-~l~~l~~L~~L~Ls~N~l~~l~~-l~~L~~L~~L~Ls~N~   74 (406)
                      ++|+.+.+..+..  +..+++|++|+|++|.|+.+   + .+..+++|++|+|++|.++.++. +..+++|++|+|++|.
T Consensus        33 L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~  112 (306)
T 2z66_A           33 LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN  112 (306)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE
T ss_pred             EECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCc
Confidence            3567778877654  46789999999999999866   2 45578999999999999998864 8889999999999999


Q ss_pred             CCCCC---CCCCCCCCcEEEcCCCCCCCCc--CCCCCCCCCEEEccCCccCC--cc-ccCCCCCCcEeeCC---------
Q 015448           75 LQSLK---GIEGLSKPTVLNVGKNKLRSMD--DVTSVVSLRALILNDNEIVS--IC-KLDQMKELNTLGMD---------  137 (406)
Q Consensus        75 l~~l~---~l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~--l~-~l~~L~~L~~L~Ls---------  137 (406)
                      ++.++   .+..+++|++|++++|.+..+.  .+..+++|++|+|++|.++.  ++ .+..+++|++|+|+         
T Consensus       113 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  192 (306)
T 2z66_A          113 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP  192 (306)
T ss_dssp             EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred             ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH
Confidence            99876   4888999999999999998754  47889999999999999986  44 38889999999998         


Q ss_pred             ---CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCcCC
Q 015448          138 ---SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPI  178 (406)
Q Consensus       138 ---~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~~~  178 (406)
                         ..+++|+.|+|++|.+..++...   +..+++|+.|+....
T Consensus       193 ~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~L~~L~L~~N  233 (306)
T 2z66_A          193 TAFNSLSSLQVLNMSHNNFFSLDTFP---YKCLNSLQVLDYSLN  233 (306)
T ss_dssp             TTTTTCTTCCEEECTTSCCSBCCSGG---GTTCTTCCEEECTTS
T ss_pred             HHhcCCCCCCEEECCCCccCccChhh---ccCcccCCEeECCCC
Confidence               57789999999999999886543   567899998876543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.67  E-value=2e-16  Score=155.44  Aligned_cols=169  Identities=21%  Similarity=0.254  Sum_probs=137.2

Q ss_pred             cccccccCCCCCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCCCC
Q 015448            4 LSTQQILKDNKTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSLK   79 (406)
Q Consensus         4 Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~l~   79 (406)
                      ++.+.+..+.. ..+++|++|+|++|.|+.++  .+..+++|++|+|++|.|+.++  .|..+++|++|+|++|.|+.++
T Consensus        38 ~~~~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  116 (353)
T 2z80_A           38 GSSGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS  116 (353)
T ss_dssp             CCSTTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCC
T ss_pred             CCCCCcccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCC
Confidence            34444444432 34578999999999999886  5889999999999999999874  3889999999999999999988


Q ss_pred             -C-CCCCCCCcEEEcCCCCCCCCcC---CCCCCCCCEEEccCC-ccCCcc--ccCCCCCCcEeeCC------------CC
Q 015448           80 -G-IEGLSKPTVLNVGKNKLRSMDD---VTSVVSLRALILNDN-EIVSIC--KLDQMKELNTLGMD------------SY  139 (406)
Q Consensus        80 -~-l~~l~~L~~L~Ls~N~i~~l~~---l~~l~~L~~L~Ls~N-~i~~l~--~l~~L~~L~~L~Ls------------~~  139 (406)
                       . +..+++|++|+|++|.|+.++.   +..+++|++|++++| .+..++  .+..+++|++|+++            ..
T Consensus       117 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~  196 (353)
T 2z80_A          117 SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS  196 (353)
T ss_dssp             HHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred             HhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhc
Confidence             3 8899999999999999998865   778999999999998 577764  37888999999887            56


Q ss_pred             CCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCc
Q 015448          140 FFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNAR  176 (406)
Q Consensus       140 l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~  176 (406)
                      +++|++|+|++|.+..++..   .+..+++|+.|+..
T Consensus       197 l~~L~~L~l~~n~l~~~~~~---~~~~~~~L~~L~L~  230 (353)
T 2z80_A          197 IQNVSHLILHMKQHILLLEI---FVDVTSSVECLELR  230 (353)
T ss_dssp             CSEEEEEEEECSCSTTHHHH---HHHHTTTEEEEEEE
T ss_pred             cccCCeecCCCCccccchhh---hhhhcccccEEECC
Confidence            78889999999998776643   34567888876643

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.67  E-value=4.4e-16  Score=143.78  Aligned_cols=144  Identities=23%  Similarity=0.372  Sum_probs=111.7

Q ss_pred             ccccccccCCCCCCCCCCccEEEeeCCCCCCCC---CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCC
Q 015448            3 RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVS---CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQS   77 (406)
Q Consensus         3 ~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~---~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~   77 (406)
                      +++.+.+..+.. ..+..++.|+|++|.|+.++   .|..+++|++|+|++|.|+.++.  |..+++|++|+|++|.|+.
T Consensus        17 ~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~   95 (220)
T 2v70_A           17 DCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN   95 (220)
T ss_dssp             ECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCC
T ss_pred             EeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCc
Confidence            456666655432 34567788888888888773   47788888888888888887753  8888888888888888888


Q ss_pred             CCC--CCCCCCCcEEEcCCCCCCCCc--CCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCCCCCCCCCEEEcCCC
Q 015448           78 LKG--IEGLSKPTVLNVGKNKLRSMD--DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDSYFFNLNNLNLQGN  151 (406)
Q Consensus        78 l~~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls~~l~~L~~L~Ls~N  151 (406)
                      ++.  |..+++|++|+|++|.|+.++  .+..+++|++|+|++|.|+.+..  +.            .+++|+.|+|++|
T Consensus        96 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~------------~l~~L~~L~L~~N  163 (220)
T 2v70_A           96 VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD------------TLHSLSTLNLLAN  163 (220)
T ss_dssp             CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTT------------TCTTCCEEECCSC
T ss_pred             cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhc------------CCCCCCEEEecCc
Confidence            773  788888888888888888863  47788888888888888887743  33            4568899999999


Q ss_pred             CCCCchhH
Q 015448          152 PVAEYDKL  159 (406)
Q Consensus       152 ~i~~~~~~  159 (406)
                      ++.+...+
T Consensus       164 ~l~c~c~l  171 (220)
T 2v70_A          164 PFNCNCYL  171 (220)
T ss_dssp             CEECSGGG
T ss_pred             CCcCCCch
Confidence            99887654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.67  E-value=5.7e-16  Score=158.06  Aligned_cols=171  Identities=25%  Similarity=0.279  Sum_probs=110.1

Q ss_pred             ccccccccCCC--CCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCC
Q 015448            3 RLSTQQILKDN--KTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQ   76 (406)
Q Consensus         3 ~Ls~n~i~~~~--~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~   76 (406)
                      +|+.|.|..+.  .+..+++|++|+|++|.|+.+.  .|..+++|++|+|++|.|+.++.  |..+++|++|+|++|.+.
T Consensus        38 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~  117 (477)
T 2id5_A           38 DLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV  117 (477)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCC
T ss_pred             ECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccc
Confidence            45666666653  3455777778888877777763  67777777777777777777753  667777777777777777


Q ss_pred             CCC--CCCCCCCCcEEEcCCCCCCCCc--CCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC------------C
Q 015448           77 SLK--GIEGLSKPTVLNVGKNKLRSMD--DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD------------S  138 (406)
Q Consensus        77 ~l~--~l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls------------~  138 (406)
                      .++  .+..+++|+.|+|++|.+..++  .+..+++|+.|+|++|.++.++.  +..+++|+.|+|+            .
T Consensus       118 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~  197 (477)
T 2id5_A          118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFK  197 (477)
T ss_dssp             EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSC
T ss_pred             cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcc
Confidence            554  3666777777777777766643  35566666666666666665542  4444444444443            1


Q ss_pred             C------------------------CCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCc
Q 015448          139 Y------------------------FFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNAR  176 (406)
Q Consensus       139 ~------------------------l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~  176 (406)
                      .                        ..+|+.|+|++|.+..++..   .+..+++|+.|+..
T Consensus       198 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~Ls  256 (477)
T 2id5_A          198 RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYL---AVRHLVYLRFLNLS  256 (477)
T ss_dssp             SCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHH---HHTTCTTCCEEECC
T ss_pred             cCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHH---HhcCccccCeeECC
Confidence            1                        22566667777777666532   35667777766654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.66  E-value=1.9e-16  Score=155.59  Aligned_cols=154  Identities=22%  Similarity=0.347  Sum_probs=120.5

Q ss_pred             CccccccccCCCC--CCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCC
Q 015448            2 TRLSTQQILKDNK--TCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKL   75 (406)
Q Consensus         2 ~~Ls~n~i~~~~~--~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l   75 (406)
                      ++|+.+.|..+.+  +..+++|++|+|++|.|+.++  .|..+++|++|+|++|.|+.++.  +..+++|++|+|++|.+
T Consensus        57 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  136 (353)
T 2z80_A           57 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY  136 (353)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCC
T ss_pred             EECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCC
Confidence            3566777776654  566889999999999998874  68888999999999999988864  78889999999999999


Q ss_pred             CCCCC---CCCCCCCcEEEcCCC-CCCCCc--CCCCCCCCCEEEccCCccCCcc--ccCCCCCCcEeeCC----------
Q 015448           76 QSLKG---IEGLSKPTVLNVGKN-KLRSMD--DVTSVVSLRALILNDNEIVSIC--KLDQMKELNTLGMD----------  137 (406)
Q Consensus        76 ~~l~~---l~~l~~L~~L~Ls~N-~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~--~l~~L~~L~~L~Ls----------  137 (406)
                      +.++.   +..+++|++|++++| .+..++  .+..+++|++|++++|.++.+.  .+..+++|++|+++          
T Consensus       137 ~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  216 (353)
T 2z80_A          137 KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEI  216 (353)
T ss_dssp             SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHH
T ss_pred             cccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhh
Confidence            88874   778889999999988 466654  4778888899999988887763  37777788888776          


Q ss_pred             --CCCCCCCEEEcCCCCCCC
Q 015448          138 --SYFFNLNNLNLQGNPVAE  155 (406)
Q Consensus       138 --~~l~~L~~L~Ls~N~i~~  155 (406)
                        ..+++|+.|+|++|.+..
T Consensus       217 ~~~~~~~L~~L~L~~n~l~~  236 (353)
T 2z80_A          217 FVDVTSSVECLELRDTDLDT  236 (353)
T ss_dssp             HHHHTTTEEEEEEESCBCTT
T ss_pred             hhhhcccccEEECCCCcccc
Confidence              235666666666666654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.65  E-value=4.4e-16  Score=154.13  Aligned_cols=134  Identities=26%  Similarity=0.342  Sum_probs=106.0

Q ss_pred             ccccccccCCCCCCCCCCccEEEeeCCCCCCCC--CCC-CCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCC
Q 015448            3 RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVS--CLT-DFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQS   77 (406)
Q Consensus         3 ~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~--~l~-~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~   77 (406)
                      +++.+.+..+. ...+..++.|+|++|.|+.++  .+. .+++|++|+|++|.|+.++  .|..+++|++|+|++|.|+.
T Consensus        24 ~c~~~~l~~iP-~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~  102 (361)
T 2xot_A           24 SCSKQQLPNVP-QSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT  102 (361)
T ss_dssp             ECCSSCCSSCC-SSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             EeCCCCcCccC-ccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCc
Confidence            45555555543 244667899999999998876  465 8899999999999999886  38889999999999999998


Q ss_pred             CC--CCCCCCCCcEEEcCCCCCCCCc--CCCCCCCCCEEEccCCccCCccc--c---CCCCCCcEeeCC
Q 015448           78 LK--GIEGLSKPTVLNVGKNKLRSMD--DVTSVVSLRALILNDNEIVSICK--L---DQMKELNTLGMD  137 (406)
Q Consensus        78 l~--~l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l---~~L~~L~~L~Ls  137 (406)
                      ++  .|..+++|++|+|++|.|+.++  .+..+++|+.|+|++|.|+.++.  +   ..+++|+.|+|+
T Consensus       103 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~  171 (361)
T 2xot_A          103 LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS  171 (361)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECC
T ss_pred             CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC
Confidence            87  3888999999999999998864  47889999999999999998875  3   346666666655

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.65  E-value=6.6e-16  Score=157.62  Aligned_cols=158  Identities=23%  Similarity=0.356  Sum_probs=136.9

Q ss_pred             CCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCCCC--CCCCCCCCcE
Q 015448           16 CDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTV   89 (406)
Q Consensus        16 ~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~   89 (406)
                      ..+.+++.|+|++|.|+.++  .|..+++|++|+|++|.|+.+.  .|.++++|++|+|++|.|+.++  .|..+++|++
T Consensus        29 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  108 (477)
T 2id5_A           29 GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK  108 (477)
T ss_dssp             CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCE
T ss_pred             CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCE
Confidence            44689999999999999985  7899999999999999999874  4899999999999999999998  3789999999


Q ss_pred             EEcCCCCCCCCc--CCCCCCCCCEEEccCCccCCcc--ccCCCCCCcEeeCC------------CCCCCCCEEEcCCCCC
Q 015448           90 LNVGKNKLRSMD--DVTSVVSLRALILNDNEIVSIC--KLDQMKELNTLGMD------------SYFFNLNNLNLQGNPV  153 (406)
Q Consensus        90 L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~--~l~~L~~L~~L~Ls------------~~l~~L~~L~Ls~N~i  153 (406)
                      |+|++|.|..++  .+..+++|++|+|++|.++.+.  .+..+++|+.|+|+            ..+++|+.|+|++|.+
T Consensus       109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i  188 (477)
T 2id5_A          109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI  188 (477)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred             EECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC
Confidence            999999998864  4889999999999999998876  38889999999987            5788999999999999


Q ss_pred             CCchhHHHHHHhcCCCcccccCc
Q 015448          154 AEYDKLAKKVKTLLPNLCIFNAR  176 (406)
Q Consensus       154 ~~~~~~~~~~~~~lp~L~~Ld~~  176 (406)
                      ..++...   +..+++|+.|+..
T Consensus       189 ~~~~~~~---~~~l~~L~~L~l~  208 (477)
T 2id5_A          189 NAIRDYS---FKRLYRLKVLEIS  208 (477)
T ss_dssp             CEECTTC---SCSCTTCCEEEEE
T ss_pred             cEeChhh---cccCcccceeeCC
Confidence            8876532   5567777766654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.65  E-value=4.3e-16  Score=147.77  Aligned_cols=176  Identities=23%  Similarity=0.256  Sum_probs=144.3

Q ss_pred             CccccccccCCC--CCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCC
Q 015448            2 TRLSTQQILKDN--KTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKL   75 (406)
Q Consensus         2 ~~Ls~n~i~~~~--~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l   75 (406)
                      ++|+.+.+..+.  .+..+++|++|+|++|.|+.++  .+..+++|++|+|++|.|+.++  .|..+++|++|++++|.+
T Consensus        33 L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  112 (276)
T 2z62_A           33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL  112 (276)
T ss_dssp             EECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             EECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCc
Confidence            356777777765  3566899999999999999876  6899999999999999999876  489999999999999999


Q ss_pred             CCCC--CCCCCCCCcEEEcCCCCCCC--Cc-CCCCCCCCCEEEccCCccCCccc--cCCCCCCc----EeeCC-------
Q 015448           76 QSLK--GIEGLSKPTVLNVGKNKLRS--MD-DVTSVVSLRALILNDNEIVSICK--LDQMKELN----TLGMD-------  137 (406)
Q Consensus        76 ~~l~--~l~~l~~L~~L~Ls~N~i~~--l~-~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~----~L~Ls-------  137 (406)
                      ..++  .+..+++|++|+|++|.++.  +| .+..+++|++|+|++|.|+.++.  +..+..|+    .|+++       
T Consensus       113 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~  192 (276)
T 2z62_A          113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI  192 (276)
T ss_dssp             CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEE
T ss_pred             cccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCccccc
Confidence            9887  48899999999999999988  45 58889999999999999988753  55555555    67776       


Q ss_pred             ----CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccC--cCCCh
Q 015448          138 ----SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNA--RPIDR  180 (406)
Q Consensus       138 ----~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~--~~~~~  180 (406)
                          ....+|+.|+|++|.++.++..   ++..+++|+.|+.  +++..
T Consensus       193 ~~~~~~~~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          193 QPGAFKEIRLKELALDTNQLKSVPDG---IFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             CTTSSCSCCEEEEECCSSCCSCCCTT---TTTTCCSCCEEECCSSCBCC
T ss_pred             CccccCCCcccEEECCCCceeecCHh---HhcccccccEEEccCCcccc
Confidence                2334899999999999988753   3567899987664  45443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.65  E-value=2e-15  Score=146.76  Aligned_cols=152  Identities=22%  Similarity=0.326  Sum_probs=95.0

Q ss_pred             CCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCC-C-CCCCCCCCcEEEecCCCCCCCC-CCCCCCCCcEEEc
Q 015448           18 PNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSL-E-GLKHCVNLKWLSLVQNKLQSLK-GIEGLSKPTVLNV   92 (406)
Q Consensus        18 ~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l-~-~l~~L~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L   92 (406)
                      ++.|+.|+|++|.|+.++  .|..+++|++|+|++|.|+.+ + .|..+++|++|+|++|.|+.+| .+.  ++|++|++
T Consensus        51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l  128 (330)
T 1xku_A           51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRV  128 (330)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEEC
T ss_pred             CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEEC
Confidence            567788888888887775  577778888888888887776 3 3777788888888888777776 232  56777777


Q ss_pred             CCCCCCCCcC--CCCCCCCCEEEccCCccCCc----cccCCCCCCcEeeCC---------CCCCCCCEEEcCCCCCCCch
Q 015448           93 GKNKLRSMDD--VTSVVSLRALILNDNEIVSI----CKLDQMKELNTLGMD---------SYFFNLNNLNLQGNPVAEYD  157 (406)
Q Consensus        93 s~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l----~~l~~L~~L~~L~Ls---------~~l~~L~~L~Ls~N~i~~~~  157 (406)
                      ++|.++.++.  +..+++|++|++++|.+...    ..+..+++|++|+++         ...++|+.|+|++|.+..+.
T Consensus       129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~  208 (330)
T 1xku_A          129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVD  208 (330)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEEC
T ss_pred             CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccC
Confidence            7777666542  56666666666666666431    125555666666655         11245555555555555443


Q ss_pred             hHHHHHHhcCCCccccc
Q 015448          158 KLAKKVKTLLPNLCIFN  174 (406)
Q Consensus       158 ~~~~~~~~~lp~L~~Ld  174 (406)
                      ..   .+..+++|+.|+
T Consensus       209 ~~---~~~~l~~L~~L~  222 (330)
T 1xku_A          209 AA---SLKGLNNLAKLG  222 (330)
T ss_dssp             TG---GGTTCTTCCEEE
T ss_pred             HH---HhcCCCCCCEEE
Confidence            21   133445555444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.64  E-value=1.3e-16  Score=164.47  Aligned_cols=170  Identities=21%  Similarity=0.215  Sum_probs=119.9

Q ss_pred             CccccccccCCC--CCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCC------------------CCC
Q 015448            2 TRLSTQQILKDN--KTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEG------------------LKH   61 (406)
Q Consensus         2 ~~Ls~n~i~~~~--~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~------------------l~~   61 (406)
                      ++|+.|.|..+.  .+..+++|++|+|++|.|+.++.+..+++|++|+|++|.|+.++.                  ...
T Consensus        39 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~  118 (487)
T 3oja_A           39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSR  118 (487)
T ss_dssp             EECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECC
T ss_pred             EEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccc
Confidence            356677777665  355678888888888888776557777788777777776655431                  123


Q ss_pred             CCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCCCCCCCCc--CCC-CCCCCCEEEccCCccCCccccCCCCCCcEeeC
Q 015448           62 CVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGKNKLRSMD--DVT-SVVSLRALILNDNEIVSICKLDQMKELNTLGM  136 (406)
Q Consensus        62 L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~i~~l~--~l~-~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~L  136 (406)
                      +++|++|+|++|.|+.++  .+..+++|++|+|++|.|+.++  .+. .+++|++|+|++|.|+.++.+..+++|++|+|
T Consensus       119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L  198 (487)
T 3oja_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDL  198 (487)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEEC
T ss_pred             cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEEC
Confidence            566777777777777654  4667778888888888877642  343 57788888888888877776667778888887


Q ss_pred             C-----------CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccC
Q 015448          137 D-----------SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNA  175 (406)
Q Consensus       137 s-----------~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~  175 (406)
                      +           ..+++|+.|+|++|.|+.++..    +..+++|..|+.
T Consensus       199 s~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~----l~~l~~L~~L~l  244 (487)
T 3oja_A          199 SSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA----LRFSQNLEHFDL  244 (487)
T ss_dssp             CSSCCCEECGGGGGGTTCSEEECTTSCCCEECTT----CCCCTTCCEEEC
T ss_pred             CCCCCCCCCHhHcCCCCccEEEecCCcCcccchh----hccCCCCCEEEc
Confidence            7           4567788888888888776642    456677776554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.64  E-value=3.7e-16  Score=151.35  Aligned_cols=140  Identities=17%  Similarity=0.196  Sum_probs=70.9

Q ss_pred             CCCccEEEeeCCCCCC-CC-CC--CCCCCCcEEEccCCCCCCCCC-CCCC-----CCCcEEEecCCCCCCCC--CCCCCC
Q 015448           18 PNSIKSLSLTHKALSD-VS-CL--TDFNNLERLDLSSNNLTSLEG-LKHC-----VNLKWLSLVQNKLQSLK--GIEGLS   85 (406)
Q Consensus        18 ~~~L~~L~Ls~n~l~~-i~-~l--~~l~~L~~L~Ls~N~l~~l~~-l~~L-----~~L~~L~Ls~N~l~~l~--~l~~l~   85 (406)
                      +++|++|+|++|.|++ ++ .+  ..+++|++|+|++|.|+.++. +..+     ++|++|+|++|.|..++  .+..++
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~  173 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP  173 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence            4555555665555553 23 22  555555555555555555432 2222     55555555555555544  355555


Q ss_pred             CCcEEEcCCCCCCCC---c-CC--CCCCCCCEEEccCCccCCccc-----cCCCCCCcEeeCC-------------CCCC
Q 015448           86 KPTVLNVGKNKLRSM---D-DV--TSVVSLRALILNDNEIVSICK-----LDQMKELNTLGMD-------------SYFF  141 (406)
Q Consensus        86 ~L~~L~Ls~N~i~~l---~-~l--~~l~~L~~L~Ls~N~i~~l~~-----l~~L~~L~~L~Ls-------------~~l~  141 (406)
                      +|++|+|++|.+...   + .+  ..+++|++|+|++|.|+.++.     +..+++|++|+|+             ..++
T Consensus       174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~  253 (312)
T 1wwl_A          174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS  253 (312)
T ss_dssp             SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred             CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence            555555555554331   1 22  455555555555555553321     2344555555555             1234


Q ss_pred             CCCEEEcCCCCCCCch
Q 015448          142 NLNNLNLQGNPVAEYD  157 (406)
Q Consensus       142 ~L~~L~Ls~N~i~~~~  157 (406)
                      +|+.|+|++|.|+.++
T Consensus       254 ~L~~L~Ls~N~l~~ip  269 (312)
T 1wwl_A          254 QLNSLNLSFTGLKQVP  269 (312)
T ss_dssp             TCCEEECTTSCCSSCC
T ss_pred             CCCEEECCCCccChhh
Confidence            5556666666555444

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.63  E-value=2.3e-15  Score=146.69  Aligned_cols=154  Identities=18%  Similarity=0.293  Sum_probs=93.7

Q ss_pred             CCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCCCCC-CCCCCCCcEEEc
Q 015448           18 PNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSLKG-IEGLSKPTVLNV   92 (406)
Q Consensus        18 ~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~L   92 (406)
                      +++|+.|+|++|.|+.++  .|..+++|++|+|++|.|+.+.  .|..+++|++|+|++|.++.+|. +.  ++|++|++
T Consensus        53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l  130 (332)
T 2ft3_A           53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRI  130 (332)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEEC
T ss_pred             CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEEC
Confidence            456777777777776663  5667777777777777776652  36667777777777777776662 32  56666666


Q ss_pred             CCCCCCCCcC--CCCCCCCCEEEccCCccCCc---c-ccCCC--------------------CCCcEeeCC---------
Q 015448           93 GKNKLRSMDD--VTSVVSLRALILNDNEIVSI---C-KLDQM--------------------KELNTLGMD---------  137 (406)
Q Consensus        93 s~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l---~-~l~~L--------------------~~L~~L~Ls---------  137 (406)
                      ++|.|+.++.  +..+++|++|++++|.++..   + .+..+                    ++|++|+|+         
T Consensus       131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~  210 (332)
T 2ft3_A          131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIEL  210 (332)
T ss_dssp             CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCT
T ss_pred             CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCH
Confidence            6666666542  55666666666666665421   1 12211                    345555554         


Q ss_pred             ---CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCc
Q 015448          138 ---SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNAR  176 (406)
Q Consensus       138 ---~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~  176 (406)
                         ..+++|+.|+|++|.+..++..   .+..+++|+.|+..
T Consensus       211 ~~l~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~  249 (332)
T 2ft3_A          211 EDLLRYSKLYRLGLGHNQIRMIENG---SLSFLPTLRELHLD  249 (332)
T ss_dssp             TSSTTCTTCSCCBCCSSCCCCCCTT---GGGGCTTCCEEECC
T ss_pred             HHhcCCCCCCEEECCCCcCCcCChh---HhhCCCCCCEEECC
Confidence               3556677777777777666532   14566777766543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.63  E-value=5.8e-15  Score=143.52  Aligned_cols=171  Identities=23%  Similarity=0.293  Sum_probs=134.3

Q ss_pred             CccccccccCCCC--CCCCCCccEEEeeCCCCCCC-C-CCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCC
Q 015448            2 TRLSTQQILKDNK--TCDPNSIKSLSLTHKALSDV-S-CLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQS   77 (406)
Q Consensus         2 ~~Ls~n~i~~~~~--~~~~~~L~~L~Ls~n~l~~i-~-~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~   77 (406)
                      ++|+.+.|..+.+  +..+++|++|+|++|.|+.+ + .+..+++|++|+|++|.|+.++.-. .++|++|++++|.++.
T Consensus        57 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~-~~~L~~L~l~~n~l~~  135 (330)
T 1xku_A           57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM-PKTLQELRVHENEITK  135 (330)
T ss_dssp             EECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC-CTTCCEEECCSSCCCB
T ss_pred             EECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhh-cccccEEECCCCcccc
Confidence            3567777777654  56688999999999999887 3 7888999999999999998876421 2789999999999988


Q ss_pred             CC--CCCCCCCCcEEEcCCCCCCC--C-c-CCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC------------CC
Q 015448           78 LK--GIEGLSKPTVLNVGKNKLRS--M-D-DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD------------SY  139 (406)
Q Consensus        78 l~--~l~~l~~L~~L~Ls~N~i~~--l-~-~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls------------~~  139 (406)
                      ++  .+..+++|++|++++|.+..  + + .+..+++|++|++++|.++.++... .++|++|+|+            ..
T Consensus       136 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n~l~~~~~~~~~~  214 (330)
T 1xku_A          136 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDGNKITKVDAASLKG  214 (330)
T ss_dssp             BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC-CTTCSEEECTTSCCCEECTGGGTT
T ss_pred             cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc-cccCCEEECCCCcCCccCHHHhcC
Confidence            77  37888999999999998864  2 2 4778889999999999998887522 2788888887            56


Q ss_pred             CCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCcC
Q 015448          140 FFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARP  177 (406)
Q Consensus       140 l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~~  177 (406)
                      +++|+.|+|++|.+..++..   .+..+++|+.|+...
T Consensus       215 l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~  249 (330)
T 1xku_A          215 LNNLAKLGLSFNSISAVDNG---SLANTPHLRELHLNN  249 (330)
T ss_dssp             CTTCCEEECCSSCCCEECTT---TGGGSTTCCEEECCS
T ss_pred             CCCCCEEECCCCcCceeChh---hccCCCCCCEEECCC
Confidence            78899999999999877642   256688888776543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.63  E-value=2.9e-16  Score=161.99  Aligned_cols=156  Identities=26%  Similarity=0.255  Sum_probs=123.4

Q ss_pred             CCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCC-------------
Q 015448           17 DPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGI-------------   81 (406)
Q Consensus        17 ~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l-------------   81 (406)
                      .+++|++|+|++|.|+.++  .|..+++|++|+|++|.|+.++++..+++|++|+|++|.|+.++..             
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l  111 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI  111 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCC
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcC
Confidence            3568999999999999986  7899999999999999999877788999999999999887755421             


Q ss_pred             -----CCCCCCcEEEcCCCCCCCCc--CCCCCCCCCEEEccCCccCCccc--cC-CCCCCcEeeCC----------CCCC
Q 015448           82 -----EGLSKPTVLNVGKNKLRSMD--DVTSVVSLRALILNDNEIVSICK--LD-QMKELNTLGMD----------SYFF  141 (406)
Q Consensus        82 -----~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l~-~L~~L~~L~Ls----------~~l~  141 (406)
                           ..+++|+.|+|++|.|+.++  .+..+++|++|+|++|.|+.+..  +. .+++|++|+|+          ..++
T Consensus       112 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~  191 (487)
T 3oja_A          112 SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFA  191 (487)
T ss_dssp             CCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCT
T ss_pred             CCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCC
Confidence                 23567788888888887763  46678888888888888877542  43 67888888888          4578


Q ss_pred             CCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCc
Q 015448          142 NLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNAR  176 (406)
Q Consensus       142 ~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~  176 (406)
                      +|+.|+|++|.|+.+++.    +..+++|+.|+..
T Consensus       192 ~L~~L~Ls~N~l~~~~~~----~~~l~~L~~L~Ls  222 (487)
T 3oja_A          192 KLKTLDLSSNKLAFMGPE----FQSAAGVTWISLR  222 (487)
T ss_dssp             TCCEEECCSSCCCEECGG----GGGGTTCSEEECT
T ss_pred             CCCEEECCCCCCCCCCHh----HcCCCCccEEEec
Confidence            899999999999887652    4567888877654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.63  E-value=1.6e-16  Score=154.33  Aligned_cols=168  Identities=21%  Similarity=0.217  Sum_probs=100.6

Q ss_pred             ccccccccCCCC--CCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCC------------------CCC
Q 015448            3 RLSTQQILKDNK--TCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGL------------------KHC   62 (406)
Q Consensus         3 ~Ls~n~i~~~~~--~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l------------------~~L   62 (406)
                      +|+.|.|....+  +..+++|+.|+|++|.++.++.+..+++|++|+|++|.|+.++..                  ..+
T Consensus        40 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~  119 (317)
T 3o53_A           40 DLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRG  119 (317)
T ss_dssp             ECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCC
T ss_pred             ECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCcccc
Confidence            456666666542  456778888888888887665677777777777777776654311                  124


Q ss_pred             CCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCCCCCCCCc--CC-CCCCCCCEEEccCCccCCccccCCCCCCcEeeCC
Q 015448           63 VNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGKNKLRSMD--DV-TSVVSLRALILNDNEIVSICKLDQMKELNTLGMD  137 (406)
Q Consensus        63 ~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~i~~l~--~l-~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls  137 (406)
                      ++|++|+|++|.++.++  .+..+++|++|+|++|.|+.++  .+ ..+++|++|+|++|.|+.++....+++|++|+|+
T Consensus       120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls  199 (317)
T 3o53_A          120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLS  199 (317)
T ss_dssp             SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECC
T ss_pred             CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECC
Confidence            45555556666555554  3555566666666666665542  22 2455666666666666665554455666666665


Q ss_pred             -----------CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCccccc
Q 015448          138 -----------SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFN  174 (406)
Q Consensus       138 -----------~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld  174 (406)
                                 ..+++|+.|+|++|.|..++.    .+..+++|+.|+
T Consensus       200 ~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~----~~~~l~~L~~L~  243 (317)
T 3o53_A          200 SNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK----ALRFSQNLEHFD  243 (317)
T ss_dssp             SSCCCEECGGGGGGTTCSEEECTTSCCCEECT----TCCCCTTCCEEE
T ss_pred             CCcCCcchhhhcccCcccEEECcCCcccchhh----HhhcCCCCCEEE
Confidence                       345566666666666665543    134455666544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.63  E-value=5.8e-15  Score=155.19  Aligned_cols=167  Identities=21%  Similarity=0.235  Sum_probs=131.2

Q ss_pred             CccccccccCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCC
Q 015448            2 TRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGI   81 (406)
Q Consensus         2 ~~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l   81 (406)
                      ++|+.+.+..+.. ..+++|+.|+|++|.|+.+|  ..+++|++|+|++|.|+.+|.+..  +|++|+|++|.|+.+|. 
T Consensus        64 L~Ls~n~L~~lp~-~l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~lp~-  137 (571)
T 3cvr_A           64 LQLNRLNLSSLPD-NLPPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTMLPE-  137 (571)
T ss_dssp             EECCSSCCSCCCS-CCCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSCCCC-
T ss_pred             EEeCCCCCCccCH-hHcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCCCCC-
Confidence            3566677666443 23578999999999999888  668899999999999998887544  89999999999998887 


Q ss_pred             CCCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC----CCCC----CC-------CEE
Q 015448           82 EGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD----SYFF----NL-------NNL  146 (406)
Q Consensus        82 ~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls----~~l~----~L-------~~L  146 (406)
                       .+++|+.|+|++|.|+.+|.  .+++|++|+|++|.|+.++.+.  ++|++|+|+    ..++    +|       +.|
T Consensus       138 -~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L  212 (571)
T 3cvr_A          138 -LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLESLPAVPVRNHHSEETEIFF  212 (571)
T ss_dssp             -CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCCCCC--------CCEEE
T ss_pred             -cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCCchhhHHHhhhcccccceEE
Confidence             68899999999999998886  6789999999999999888743  889999988    1221    56       999


Q ss_pred             EcCCCCCCCchhHHHHHHhcCCCcccccC--cCCChhhh
Q 015448          147 NLQGNPVAEYDKLAKKVKTLLPNLCIFNA--RPIDRITK  183 (406)
Q Consensus       147 ~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~--~~~~~~~~  183 (406)
                      +|++|.|+.++..    +..+++|+.|+.  +++.....
T Consensus       213 ~Ls~N~l~~lp~~----l~~l~~L~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          213 RCRENRITHIPEN----ILSLDPTCTIILEDNPLSSRIR  247 (571)
T ss_dssp             ECCSSCCCCCCGG----GGGSCTTEEEECCSSSCCHHHH
T ss_pred             ecCCCcceecCHH----HhcCCCCCEEEeeCCcCCCcCH
Confidence            9999999988762    345899997764  45554433

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.62  E-value=3e-16  Score=152.31  Aligned_cols=170  Identities=15%  Similarity=0.208  Sum_probs=126.3

Q ss_pred             cccccccCCCCCCCCCCccEEEeeCCCCCC-------------------CCCCCCCCCCcEEEccCCCCCCCC--CCCCC
Q 015448            4 LSTQQILKDNKTCDPNSIKSLSLTHKALSD-------------------VSCLTDFNNLERLDLSSNNLTSLE--GLKHC   62 (406)
Q Consensus         4 Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~-------------------i~~l~~l~~L~~L~Ls~N~l~~l~--~l~~L   62 (406)
                      |+.|++....++..+++|++|+|++|.|+.                   ++ ...+++|++|+|++|.|+.++  .+..+
T Consensus        65 Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~L~~L~l~~N~l~~~~~~~~~~l  143 (317)
T 3o53_A           65 LSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVS-CSRGQGKKNIYLANNKITMLRDLDEGCR  143 (317)
T ss_dssp             CTTSCCEEEEEETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEE-ECCCSSCEEEECCSSCCCSGGGBCTGGG
T ss_pred             CCCCcCCcchhhhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcC-ccccCCCCEEECCCCCCCCccchhhhcc
Confidence            444444444344445555555555555443                   32 134678888999999988875  47778


Q ss_pred             CCCcEEEecCCCCCCCC--CC-CCCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccc-cCCCCCCcEeeCC-
Q 015448           63 VNLKWLSLVQNKLQSLK--GI-EGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICK-LDQMKELNTLGMD-  137 (406)
Q Consensus        63 ~~L~~L~Ls~N~l~~l~--~l-~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~-l~~L~~L~~L~Ls-  137 (406)
                      ++|++|+|++|.|+.++  .+ ..+++|++|+|++|.|+.++....+++|++|+|++|.|+.++. +..+++|+.|+|+ 
T Consensus       144 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~  223 (317)
T 3o53_A          144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRN  223 (317)
T ss_dssp             SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTT
T ss_pred             CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcC
Confidence            99999999999998765  34 4688999999999999988877778999999999999988864 7788899999998 


Q ss_pred             ----------CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCc
Q 015448          138 ----------SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNAR  176 (406)
Q Consensus       138 ----------~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~  176 (406)
                                ..+++|+.|+|++|++.+...  ...+..++.|+.|+..
T Consensus       224 N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~--~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          224 NKLVLIEKALRFSQNLEHFDLRGNGFHCGTL--RDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             SCCCEECTTCCCCTTCCEEECTTCCCBHHHH--HHHHHTCHHHHHHHHH
T ss_pred             CcccchhhHhhcCCCCCEEEccCCCccCcCH--HHHHhccccceEEECC
Confidence                      567899999999999984432  2245678888776654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.62  E-value=1e-14  Score=149.07  Aligned_cols=135  Identities=21%  Similarity=0.344  Sum_probs=71.7

Q ss_pred             CCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCCCCCCCcEEEcCCCCCC
Q 015448           19 NSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLR   98 (406)
Q Consensus        19 ~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~i~   98 (406)
                      ++|++|++++|.++.++.+..+++|++|++++|.++.+|..  +.+|++|++++|.++.+|.+..+++|++|++++|.++
T Consensus       131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~  208 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK  208 (454)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS
T ss_pred             CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCC
Confidence            34555555555555554455555555555555555554432  2355555555555555555555555555555555555


Q ss_pred             CCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC--------CCCCCCCEEEcCCCCCCCch
Q 015448           99 SMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD--------SYFFNLNNLNLQGNPVAEYD  157 (406)
Q Consensus        99 ~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls--------~~l~~L~~L~Ls~N~i~~~~  157 (406)
                      .+|.+.  ++|++|++++|.++.++.+..+++|++|+++        ..+++|+.|++++|.+..++
T Consensus       209 ~l~~~~--~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~  273 (454)
T 1jl5_A          209 KLPDLP--LSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLP  273 (454)
T ss_dssp             SCCCCC--TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCC
T ss_pred             cCCCCc--CcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccccC
Confidence            544321  3555555555555555555555666666655        22345556666666555544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.62  E-value=2.1e-15  Score=157.60  Aligned_cols=129  Identities=28%  Similarity=0.382  Sum_probs=105.8

Q ss_pred             CCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCCCC--CCCCCCCCcE
Q 015448           16 CDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTV   89 (406)
Q Consensus        16 ~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~   89 (406)
                      .-+.++++|+|++|.|+.++  .|..+++|++|+|++|.|+.++.  |.+|++|++|+|++|.|+.+|  .|.++++|++
T Consensus        49 ~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~  128 (635)
T 4g8a_A           49 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK  128 (635)
T ss_dssp             SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred             CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence            44678999999999999886  78999999999999999998863  889999999999999999888  3889999999


Q ss_pred             EEcCCCCCCCCc--CCCCCCCCCEEEccCCccCCccc---cCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCc
Q 015448           90 LNVGKNKLRSMD--DVTSVVSLRALILNDNEIVSICK---LDQMKELNTLGMDSYFFNLNNLNLQGNPVAEY  156 (406)
Q Consensus        90 L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~---l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~  156 (406)
                      |+|++|.|+.++  .+..+++|++|+|++|.|+.+..   +..++            +|++|+|++|.|..+
T Consensus       129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~------------~L~~L~L~~N~l~~~  188 (635)
T 4g8a_A          129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT------------NLEHLDLSSNKIQSI  188 (635)
T ss_dssp             EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT------------TCCEEECCSSCCCEE
T ss_pred             EECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccch------------hhhhhcccCcccccc
Confidence            999999999987  37889999999999999876542   44454            555555555555544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.62  E-value=7.6e-16  Score=148.91  Aligned_cols=140  Identities=16%  Similarity=0.123  Sum_probs=68.8

Q ss_pred             CCCCccEEEeeCCCCCCCC------CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCC---CC---CCC
Q 015448           17 DPNSIKSLSLTHKALSDVS------CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQS---LK---GIE   82 (406)
Q Consensus        17 ~~~~L~~L~Ls~n~l~~i~------~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~---l~---~l~   82 (406)
                      .+++|++|+|++|.|+...      .+..+++|++|+|++|.|+.++  .+..+++|++|+|++|.+..   ++   .+.
T Consensus       115 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~  194 (310)
T 4glp_A          115 TGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPH  194 (310)
T ss_dssp             CCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTT
T ss_pred             cCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhh
Confidence            3455555555555555421      2234555555555555555543  24555555555555555432   21   124


Q ss_pred             CCCCCcEEEcCCCCCCCCcC-----CCCCCCCCEEEccCCccCCc-c-ccCCC---CCCcEeeCC---------CCCCCC
Q 015448           83 GLSKPTVLNVGKNKLRSMDD-----VTSVVSLRALILNDNEIVSI-C-KLDQM---KELNTLGMD---------SYFFNL  143 (406)
Q Consensus        83 ~l~~L~~L~Ls~N~i~~l~~-----l~~l~~L~~L~Ls~N~i~~l-~-~l~~L---~~L~~L~Ls---------~~l~~L  143 (406)
                      .+++|++|+|++|.|+.++.     +..+++|++|+|++|.|+.+ | .+..+   ++|++|+|+         .-+++|
T Consensus       195 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~L  274 (310)
T 4glp_A          195 KFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKL  274 (310)
T ss_dssp             SSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCCSCC
T ss_pred             cCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhcCCC
Confidence            45555555555555554432     23445555566665555554 2 13322   345555544         122345


Q ss_pred             CEEEcCCCCCCCc
Q 015448          144 NNLNLQGNPVAEY  156 (406)
Q Consensus       144 ~~L~Ls~N~i~~~  156 (406)
                      +.|+|++|.|+.+
T Consensus       275 ~~L~Ls~N~l~~~  287 (310)
T 4glp_A          275 RVLDLSSNRLNRA  287 (310)
T ss_dssp             SCEECCSCCCCSC
T ss_pred             CEEECCCCcCCCC
Confidence            5555555555544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.61  E-value=1e-15  Score=134.47  Aligned_cols=132  Identities=25%  Similarity=0.308  Sum_probs=79.7

Q ss_pred             CCCCCccEEEeeCCCCC--CCC-CCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCC-CCC-CCCCCCCcEE
Q 015448           16 CDPNSIKSLSLTHKALS--DVS-CLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQS-LKG-IEGLSKPTVL   90 (406)
Q Consensus        16 ~~~~~L~~L~Ls~n~l~--~i~-~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~-l~~-l~~l~~L~~L   90 (406)
                      ..+++|+.|+|++|.|+  .++ .+..+++|++|+|++|.|+.++.+..+++|++|+|++|.|+. +|. +..+++|++|
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            34566777777777776  555 446667777777777777666556667777777777777665 442 3346666666


Q ss_pred             EcCCCCCCCCc---CCCCCCCCCEEEccCCccCCcccc--CCCCCCcEeeCCCCCCCCCEEEcCCCCCCCc
Q 015448           91 NVGKNKLRSMD---DVTSVVSLRALILNDNEIVSICKL--DQMKELNTLGMDSYFFNLNNLNLQGNPVAEY  156 (406)
Q Consensus        91 ~Ls~N~i~~l~---~l~~l~~L~~L~Ls~N~i~~l~~l--~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~  156 (406)
                      +|++|.|+.++   .+..+++|++|+|++|.++.++.+  ..+         ..+++|++|++++|.+..+
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~---------~~l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVF---------KLLPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHH---------TTCSSCCEETTEETTSCBC
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHH---------HhCccCcEecCCCCChhhc
Confidence            66666666653   355566666666666666655430  001         1334555566666555444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.61  E-value=4.6e-16  Score=151.00  Aligned_cols=157  Identities=17%  Similarity=0.205  Sum_probs=101.8

Q ss_pred             CCCCCCccEEEeeC-CCCCC-CC-CCCCCCCCcEEEccCCCCC-CCC-CCCCCCCCcEEEecCCCCC-CCC-CCCCCCCC
Q 015448           15 TCDPNSIKSLSLTH-KALSD-VS-CLTDFNNLERLDLSSNNLT-SLE-GLKHCVNLKWLSLVQNKLQ-SLK-GIEGLSKP   87 (406)
Q Consensus        15 ~~~~~~L~~L~Ls~-n~l~~-i~-~l~~l~~L~~L~Ls~N~l~-~l~-~l~~L~~L~~L~Ls~N~l~-~l~-~l~~l~~L   87 (406)
                      +..+++|++|+|++ |.+.. ++ .|..+++|++|+|++|.|+ .++ .|..+++|++|+|++|.|+ .+| .+..+++|
T Consensus        72 l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  151 (313)
T 1ogq_A           72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL  151 (313)
T ss_dssp             GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred             HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCC
Confidence            44567788888874 77664 44 6777778888888888776 344 3777777888888887777 455 47777777


Q ss_pred             cEEEcCCCCCC-CCc-CCCCCC-CCCEEEccCCccCC-cc-ccCCCCCCcEeeCC------------CCCCCCCEEEcCC
Q 015448           88 TVLNVGKNKLR-SMD-DVTSVV-SLRALILNDNEIVS-IC-KLDQMKELNTLGMD------------SYFFNLNNLNLQG  150 (406)
Q Consensus        88 ~~L~Ls~N~i~-~l~-~l~~l~-~L~~L~Ls~N~i~~-l~-~l~~L~~L~~L~Ls------------~~l~~L~~L~Ls~  150 (406)
                      ++|+|++|.|+ .+| .+..++ +|++|+|++|.++. ++ .+..+. |++|+|+            ..+++|+.|+|++
T Consensus       152 ~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  230 (313)
T 1ogq_A          152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK  230 (313)
T ss_dssp             CEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCS
T ss_pred             CeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCC
Confidence            88888777776 344 466665 77777777777763 23 244444 6666666            3556666666666


Q ss_pred             CCCCCchhHHHHHHhcCCCcccccCc
Q 015448          151 NPVAEYDKLAKKVKTLLPNLCIFNAR  176 (406)
Q Consensus       151 N~i~~~~~~~~~~~~~lp~L~~Ld~~  176 (406)
                      |.+....+.    +..+++|+.|+..
T Consensus       231 N~l~~~~~~----~~~l~~L~~L~Ls  252 (313)
T 1ogq_A          231 NSLAFDLGK----VGLSKNLNGLDLR  252 (313)
T ss_dssp             SEECCBGGG----CCCCTTCCEEECC
T ss_pred             CceeeecCc----ccccCCCCEEECc
Confidence            666544331    3445566655543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.61  E-value=5.2e-15  Score=153.15  Aligned_cols=168  Identities=19%  Similarity=0.224  Sum_probs=130.5

Q ss_pred             ccccccccCCCCC--CCCCCccEEEeeCCCCCCC-----CCCCCCCCCcEEEccCCCCCCCCC----CCCCCCCcEEEec
Q 015448            3 RLSTQQILKDNKT--CDPNSIKSLSLTHKALSDV-----SCLTDFNNLERLDLSSNNLTSLEG----LKHCVNLKWLSLV   71 (406)
Q Consensus         3 ~Ls~n~i~~~~~~--~~~~~L~~L~Ls~n~l~~i-----~~l~~l~~L~~L~Ls~N~l~~l~~----l~~L~~L~~L~Ls   71 (406)
                      +|+.+.+..+...  ..+++|++|+|++|.+++.     ..+..+++|++|+|++|.|+.++.    +..+++|++|+|+
T Consensus       316 ~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls  395 (549)
T 2z81_A          316 TVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDIS  395 (549)
T ss_dssp             EEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECT
T ss_pred             EeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECC
Confidence            3455555544322  2478899999999998863     247788999999999999988753    7888999999999


Q ss_pred             CCCCCCCC-CCCCCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC----------CCC
Q 015448           72 QNKLQSLK-GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD----------SYF  140 (406)
Q Consensus        72 ~N~l~~l~-~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls----------~~l  140 (406)
                      +|.|+.+| .+..+++|++|+|++|.|+.++.. ..++|++|+|++|.|+.+.  ..+++|++|+|+          ..+
T Consensus       396 ~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~-~~~~L~~L~Ls~N~l~~~~--~~l~~L~~L~Ls~N~l~~ip~~~~l  472 (549)
T 2z81_A          396 RNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTC-IPQTLEVLDVSNNNLDSFS--LFLPRLQELYISRNKLKTLPDASLF  472 (549)
T ss_dssp             TCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTT-SCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSSCCCGGGC
T ss_pred             CCCCccCChhhcccccccEEECCCCCcccccch-hcCCceEEECCCCChhhhc--ccCChhcEEECCCCccCcCCCcccC
Confidence            99999888 588889999999999999887642 1368888888888888764  567888888887          457


Q ss_pred             CCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCc
Q 015448          141 FNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNAR  176 (406)
Q Consensus       141 ~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~  176 (406)
                      ++|+.|+|++|.++.+++.   .+..+++|+.|+..
T Consensus       473 ~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~l~  505 (549)
T 2z81_A          473 PVLLVMKISRNQLKSVPDG---IFDRLTSLQKIWLH  505 (549)
T ss_dssp             TTCCEEECCSSCCCCCCTT---GGGGCTTCCEEECC
T ss_pred             ccCCEEecCCCccCCcCHH---HHhcCcccCEEEec
Confidence            7899999999999887653   25678888876643

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.61  E-value=6.7e-15  Score=143.37  Aligned_cols=135  Identities=24%  Similarity=0.325  Sum_probs=114.2

Q ss_pred             CCccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcC
Q 015448           19 NSIKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVG   93 (406)
Q Consensus        19 ~~L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls   93 (406)
                      .+++.|+++++.++.+| .+  .++|++|+|++|.|+.++  .|..+++|++|+|++|.|+.++  .+..+++|++|+|+
T Consensus        33 c~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             ccCCEEECCCCCccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            36899999999999988 33  479999999999999885  4999999999999999999874  59999999999999


Q ss_pred             CCCCCCCcCCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC--------------CCCCCCCEEEcCCCCCCCch
Q 015448           94 KNKLRSMDDVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD--------------SYFFNLNNLNLQGNPVAEYD  157 (406)
Q Consensus        94 ~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls--------------~~l~~L~~L~Ls~N~i~~~~  157 (406)
                      +|.|+.+|.... ++|++|++++|.|+.++.  +..+++|++|+++              ..+ +|+.|++++|.+..++
T Consensus       111 ~n~l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~  188 (332)
T 2ft3_A          111 KNHLVEIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIP  188 (332)
T ss_dssp             SSCCCSCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC
T ss_pred             CCcCCccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccC
Confidence            999999874222 899999999999999875  8899999999988              122 6667777777666654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.61  E-value=5.3e-15  Score=155.08  Aligned_cols=170  Identities=22%  Similarity=0.286  Sum_probs=111.7

Q ss_pred             cccccccCCCC--CCCCCCccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCC-C
Q 015448            4 LSTQQILKDNK--TCDPNSIKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQ-S   77 (406)
Q Consensus         4 Ls~n~i~~~~~--~~~~~~L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~-~   77 (406)
                      |+.+.+..+.+  +..+++|++|+|++|.++.+| .+..+++|++|+|++|.++.++  .+..+++|++|+|++|.+. .
T Consensus       261 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~  340 (606)
T 3t6q_A          261 LQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE  340 (606)
T ss_dssp             CTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCB
T ss_pred             eecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccc
Confidence            44455555443  455677888888888887776 6777778888888888777663  3666777777777777665 4


Q ss_pred             CC--CCCCCCCCcEEEcCCCCCCCCc----CCCCCCCCCEEEccCCccCCcc--ccCCCCCCcEeeCC------------
Q 015448           78 LK--GIEGLSKPTVLNVGKNKLRSMD----DVTSVVSLRALILNDNEIVSIC--KLDQMKELNTLGMD------------  137 (406)
Q Consensus        78 l~--~l~~l~~L~~L~Ls~N~i~~l~----~l~~l~~L~~L~Ls~N~i~~l~--~l~~L~~L~~L~Ls------------  137 (406)
                      ++  .+..+++|++|++++|.+..+.    .+..+++|++|++++|.+..+.  .+..+++|++|+++            
T Consensus       341 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  420 (606)
T 3t6q_A          341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP  420 (606)
T ss_dssp             CCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCT
T ss_pred             cchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchh
Confidence            44  2667777777777777776642    3566777777777777766553  25666777777766            


Q ss_pred             -CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCc
Q 015448          138 -SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNAR  176 (406)
Q Consensus       138 -~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~  176 (406)
                       ..+++|+.|+|++|.+....+.   .+..+++|+.|+..
T Consensus       421 ~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~L~  457 (606)
T 3t6q_A          421 FQNLHLLKVLNLSHSLLDISSEQ---LFDGLPALQHLNLQ  457 (606)
T ss_dssp             TTTCTTCCEEECTTCCCBTTCTT---TTTTCTTCCEEECT
T ss_pred             hhCcccCCEEECCCCccCCcCHH---HHhCCCCCCEEECC
Confidence             3456677777777776654332   24456666666544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.60  E-value=1.1e-14  Score=153.01  Aligned_cols=145  Identities=21%  Similarity=0.219  Sum_probs=123.5

Q ss_pred             CccccccccCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCC
Q 015448            2 TRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGI   81 (406)
Q Consensus         2 ~~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l   81 (406)
                      ++|+.|.|..+.  ..+++|+.|+|++|.|+.++.+..  +|++|+|++|.|+.+|.  .+++|++|+|++|.|+.+|. 
T Consensus        85 L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~-  157 (571)
T 3cvr_A           85 LEITQNALISLP--ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLPE-  157 (571)
T ss_dssp             EECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-
T ss_pred             EECcCCCCcccc--cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCCCCC--cCccccEEeCCCCccCcCCC-
Confidence            457788888665  668999999999999999887443  99999999999999988  78999999999999999887 


Q ss_pred             CCCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCC-------cEeeCC-----------CCCCCC
Q 015448           82 EGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKEL-------NTLGMD-----------SYFFNL  143 (406)
Q Consensus        82 ~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L-------~~L~Ls-----------~~l~~L  143 (406)
                       .+++|+.|+|++|.|+.+|.+.  ++|++|+|++|.|+.++.+..  +|       +.|+|+           ..+++|
T Consensus       158 -~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~~lp~~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L  232 (571)
T 3cvr_A          158 -LPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLESLPAVPV--RNHHSEETEIFFRCRENRITHIPENILSLDPT  232 (571)
T ss_dssp             -CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCCCCC----------CCEEEECCSSCCCCCCGGGGGSCTT
T ss_pred             -cCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCCchhhHHH--hhhcccccceEEecCCCcceecCHHHhcCCCC
Confidence             6789999999999999998754  899999999999998887333  67       999988           458899


Q ss_pred             CEEEcCCCCCCCchh
Q 015448          144 NNLNLQGNPVAEYDK  158 (406)
Q Consensus       144 ~~L~Ls~N~i~~~~~  158 (406)
                      +.|+|++|+++...+
T Consensus       233 ~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          233 CTIILEDNPLSSRIR  247 (571)
T ss_dssp             EEEECCSSSCCHHHH
T ss_pred             CEEEeeCCcCCCcCH
Confidence            999999999987644

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.60  E-value=2.8e-18  Score=155.52  Aligned_cols=159  Identities=23%  Similarity=0.371  Sum_probs=132.1

Q ss_pred             CCccEEEeeCC--CCCCCC-CCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCC-CCCCCCCcEEEcCC
Q 015448           19 NSIKSLSLTHK--ALSDVS-CLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG-IEGLSKPTVLNVGK   94 (406)
Q Consensus        19 ~~L~~L~Ls~n--~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~   94 (406)
                      -.|+.+.++++  .++.++ .+..+++|++|+|++|.|+.++.+..+++|++|+|++|.|+.+|. +..+++|++|+|++
T Consensus        23 l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~  102 (198)
T 1ds9_A           23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY  102 (198)
T ss_dssp             TTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE
T ss_pred             cchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC
Confidence            34555555544  455555 678899999999999999999988889999999999999999985 55678999999999


Q ss_pred             CCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCc-------hhHHHHHHhcC
Q 015448           95 NKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEY-------DKLAKKVKTLL  167 (406)
Q Consensus        95 N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~-------~~~~~~~~~~l  167 (406)
                      |.|+.++.+..+++|++|+|++|.|+.++.+..+         ..+++|++|+|++|++.+.       ..+...++..+
T Consensus       103 N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l---------~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l  173 (198)
T 1ds9_A          103 NQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKL---------AALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL  173 (198)
T ss_dssp             EECCCHHHHHHHHHSSEEEESEEECCCHHHHHHH---------TTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHC
T ss_pred             CcCCcCCccccCCCCCEEECCCCcCCchhHHHHH---------hcCCCCCEEEecCCccccccccccchHHHHHHHHHhC
Confidence            9999998888899999999999999987653222         2556899999999999776       45566678899


Q ss_pred             CCcccccCcCCChhhhhhh
Q 015448          168 PNLCIFNARPIDRITKNEK  186 (406)
Q Consensus       168 p~L~~Ld~~~~~~~~~~~~  186 (406)
                      |+|+.||+.+++..++..+
T Consensus       174 ~~L~~Ld~~~i~~~e~~~a  192 (198)
T 1ds9_A          174 PNLKKLDGMPVDVDEREQA  192 (198)
T ss_dssp             SSCSEECCGGGTTTTTTHH
T ss_pred             CCcEEECCcccCHHHHHHH
Confidence            9999999999998877765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.60  E-value=3e-14  Score=129.41  Aligned_cols=141  Identities=27%  Similarity=0.292  Sum_probs=118.8

Q ss_pred             ccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCCCCC--CCCCCCCcEEEcCCCC
Q 015448           21 IKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSLKG--IEGLSKPTVLNVGKNK   96 (406)
Q Consensus        21 L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~   96 (406)
                      -+.++++++.++.++. ...++|++|+|++|.|+.++.  |..+++|++|+|++|.|+.++.  +..+++|++|+|++|.
T Consensus         9 ~~~v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A            9 GTTVECYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             TTEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEEecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            3678999999998872 225699999999999998875  7899999999999999999883  7899999999999999


Q ss_pred             CCCCcC--CCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCccc
Q 015448           97 LRSMDD--VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCI  172 (406)
Q Consensus        97 i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~  172 (406)
                      |+.++.  +..+++|++|+|++|.|+.++.  +.            .+++|+.|+|++|.+..++..   .+..+++|+.
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~------------~l~~L~~L~l~~N~l~~~~~~---~~~~l~~L~~  152 (208)
T 2o6s_A           88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFD------------KLTQLKDLRLYQNQLKSVPDG---VFDRLTSLQY  152 (208)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT------------TCTTCCEEECCSSCCSCCCTT---TTTTCTTCCE
T ss_pred             CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhc------------cCCcCCEEECCCCccceeCHH---HhccCCCccE
Confidence            999874  6889999999999999998764  33            456899999999999987752   3567889997


Q ss_pred             ccCcC
Q 015448          173 FNARP  177 (406)
Q Consensus       173 Ld~~~  177 (406)
                      |+...
T Consensus       153 L~l~~  157 (208)
T 2o6s_A          153 IWLHD  157 (208)
T ss_dssp             EECCS
T ss_pred             EEecC
Confidence            76543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.60  E-value=1.5e-14  Score=134.06  Aligned_cols=146  Identities=25%  Similarity=0.301  Sum_probs=122.3

Q ss_pred             CccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCCCCC--CCCCCCCcEEEcCCC
Q 015448           20 SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSLKG--IEGLSKPTVLNVGKN   95 (406)
Q Consensus        20 ~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N   95 (406)
                      ..+.++++++.++.+|. .-.++|++|+|++|.|+.+++  |..+++|++|+|++|.|+.++.  +..+++|++|+|++|
T Consensus        20 s~~~v~c~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           20 SGTTVDCRSKRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             ETTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             eCCEeEccCCCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            35689999999999983 123899999999999999853  8899999999999999999983  789999999999999


Q ss_pred             CCCCCcC--CCCCCCCCEEEccCCccCCccc-cCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCccc
Q 015448           96 KLRSMDD--VTSVVSLRALILNDNEIVSICK-LDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCI  172 (406)
Q Consensus        96 ~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~-l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~  172 (406)
                      .|+.++.  +..+++|++|+|++|.|+.++. +.            .+++|+.|+|++|.|..++..   .+..+++|+.
T Consensus        99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~------------~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~  163 (229)
T 3e6j_A           99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIE------------RLTHLTHLALDQNQLKSIPHG---AFDRLSSLTH  163 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGG------------GCTTCSEEECCSSCCCCCCTT---TTTTCTTCCE
T ss_pred             cCCccChhHhCcchhhCeEeccCCcccccCcccc------------cCCCCCEEECCCCcCCccCHH---HHhCCCCCCE
Confidence            9999874  7889999999999999998864 43            456899999999999988752   3567888887


Q ss_pred             cc--CcCCChh
Q 015448          173 FN--ARPIDRI  181 (406)
Q Consensus       173 Ld--~~~~~~~  181 (406)
                      |+  ++++...
T Consensus       164 L~l~~N~~~c~  174 (229)
T 3e6j_A          164 AYLFGNPWDCE  174 (229)
T ss_dssp             EECTTSCBCTT
T ss_pred             EEeeCCCccCC
Confidence            65  4555443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.59  E-value=6.3e-15  Score=148.95  Aligned_cols=91  Identities=20%  Similarity=0.233  Sum_probs=45.2

Q ss_pred             CCCCCCCcEEEcCCCCCCCCc--CCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC------------CCCCCCC
Q 015448           81 IEGLSKPTVLNVGKNKLRSMD--DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD------------SYFFNLN  144 (406)
Q Consensus        81 l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls------------~~l~~L~  144 (406)
                      +..+++|++|+|++|.|+.++  .+..+++|++|+|++|.|+.+..  +..+++|++|+|+            ..+++|+
T Consensus       295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  374 (455)
T 3v47_A          295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK  374 (455)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccccc
Confidence            344445555555555554432  24445555555555555544421  4455555555555            3445555


Q ss_pred             EEEcCCCCCCCchhHHHHHHhcCCCccccc
Q 015448          145 NLNLQGNPVAEYDKLAKKVKTLLPNLCIFN  174 (406)
Q Consensus       145 ~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld  174 (406)
                      +|+|++|.++.++..   .+..+++|+.|+
T Consensus       375 ~L~L~~N~l~~~~~~---~~~~l~~L~~L~  401 (455)
T 3v47_A          375 ELALDTNQLKSVPDG---IFDRLTSLQKIW  401 (455)
T ss_dssp             EEECCSSCCSCCCTT---TTTTCTTCCEEE
T ss_pred             EEECCCCccccCCHh---HhccCCcccEEE
Confidence            566655555554432   134455555443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.59  E-value=3.3e-15  Score=131.27  Aligned_cols=134  Identities=25%  Similarity=0.348  Sum_probs=115.2

Q ss_pred             CCCCCCcEEEccCCCCC--CCCC-CCCCCCCcEEEecCCCCCCCCCCCCCCCCcEEEcCCCCCCC-CcC-CCCCCCCCEE
Q 015448           38 TDFNNLERLDLSSNNLT--SLEG-LKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRS-MDD-VTSVVSLRAL  112 (406)
Q Consensus        38 ~~l~~L~~L~Ls~N~l~--~l~~-l~~L~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~i~~-l~~-l~~l~~L~~L  112 (406)
                      ...++|++|+|++|.|+  .++. +..+++|++|+|++|.|+.++.+..+++|++|+|++|.|+. +|. +..+++|++|
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            34588999999999998  7775 68899999999999999988889999999999999999998 664 4459999999


Q ss_pred             EccCCccCCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCcCCCh
Q 015448          113 ILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPIDR  180 (406)
Q Consensus       113 ~Ls~N~i~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~~~~~  180 (406)
                      +|++|.|+.++.+..+.         .+++|+.|+|++|+++.++.++...+..+++|+.|+...+..
T Consensus       101 ~Ls~N~l~~~~~~~~l~---------~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLK---------KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             ECBSSSCCSSGGGGGGS---------SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             eccCCccCcchhHHHHh---------cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            99999999986543332         567999999999999999887777889999999998876653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.59  E-value=8.1e-15  Score=155.90  Aligned_cols=155  Identities=25%  Similarity=0.287  Sum_probs=131.1

Q ss_pred             ccccccccCCCCCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCCC
Q 015448            3 RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSL   78 (406)
Q Consensus         3 ~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~l   78 (406)
                      +++.+.+..+.. ..+++|++|+|++|.|+.++  .|..+++|++|+|++|.++.+++  |..+++|++|+|++|.++.+
T Consensus        10 ~cs~~~L~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l   88 (680)
T 1ziw_A           10 DCSHLKLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL   88 (680)
T ss_dssp             ECCSSCCSSCCS-CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCC
T ss_pred             ECCCCCcccccc-ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCcc
Confidence            445555555443 33589999999999999987  68899999999999999998853  78899999999999999999


Q ss_pred             CC--CCCCCCCcEEEcCCCCCCCCc--CCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC--------------C
Q 015448           79 KG--IEGLSKPTVLNVGKNKLRSMD--DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD--------------S  138 (406)
Q Consensus        79 ~~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls--------------~  138 (406)
                      |.  |..+++|++|+|++|.++.++  .+..+++|++|+|++|.++.++.  +..+++|++|+|+              .
T Consensus        89 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  168 (680)
T 1ziw_A           89 SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF  168 (680)
T ss_dssp             CTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGG
T ss_pred             ChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcc
Confidence            83  899999999999999999886  48899999999999999987653  7789999999987              1


Q ss_pred             CCCCCCEEEcCCCCCCCchh
Q 015448          139 YFFNLNNLNLQGNPVAEYDK  158 (406)
Q Consensus       139 ~l~~L~~L~Ls~N~i~~~~~  158 (406)
                      .+++|+.|+|++|.+..+++
T Consensus       169 ~~~~L~~L~L~~n~l~~~~~  188 (680)
T 1ziw_A          169 ANSSLKKLELSSNQIKEFSP  188 (680)
T ss_dssp             TTCEESEEECTTCCCCCBCT
T ss_pred             ccccccEEECCCCcccccCh
Confidence            34789999999999987654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.59  E-value=2.8e-14  Score=145.89  Aligned_cols=148  Identities=24%  Similarity=0.345  Sum_probs=100.2

Q ss_pred             CCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCCCCCCCcEEEcCCCCC
Q 015448           18 PNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKL   97 (406)
Q Consensus        18 ~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~i   97 (406)
                      +++|+.|++++|.++.++..  +++|++|++++|.++.++.+.  ++|++|+|++|.++.+|.+..+++|++|++++|.+
T Consensus        90 ~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l  165 (454)
T 1jl5_A           90 PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSL  165 (454)
T ss_dssp             CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC
T ss_pred             cCCCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCCC--CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcC
Confidence            46778888888877776632  367777777777777665432  57777777777777777777777777777777777


Q ss_pred             CCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC--------CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCC
Q 015448           98 RSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD--------SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPN  169 (406)
Q Consensus        98 ~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls--------~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~  169 (406)
                      +.+|..  +.+|++|++++|.++.++.+..+++|++|+++        ...++|+.|++++|.+..++.     +..+++
T Consensus       166 ~~lp~~--~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp~-----~~~l~~  238 (454)
T 1jl5_A          166 KKLPDL--PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPE-----LQNLPF  238 (454)
T ss_dssp             SCCCCC--CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCC-----CTTCTT
T ss_pred             cccCCC--cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCcccc-----cCCCCC
Confidence            776642  24777777777777777667777777777776        223467777777777766553     345666


Q ss_pred             cccccCc
Q 015448          170 LCIFNAR  176 (406)
Q Consensus       170 L~~Ld~~  176 (406)
                      |+.|+..
T Consensus       239 L~~L~l~  245 (454)
T 1jl5_A          239 LTTIYAD  245 (454)
T ss_dssp             CCEEECC
T ss_pred             CCEEECC
Confidence            6665543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=1.5e-15  Score=130.80  Aligned_cols=126  Identities=23%  Similarity=0.381  Sum_probs=63.6

Q ss_pred             CCCcEEEccCCCCC--CCCC-CCCCCCCcEEEecCCCCCCCCCCCCCCCCcEEEcCCCCCCC-CcC-CCCCCCCCEEEcc
Q 015448           41 NNLERLDLSSNNLT--SLEG-LKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRS-MDD-VTSVVSLRALILN  115 (406)
Q Consensus        41 ~~L~~L~Ls~N~l~--~l~~-l~~L~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~i~~-l~~-l~~l~~L~~L~Ls  115 (406)
                      ++|++|++++|.++  .++. +..+++|++|+|++|.|+.++.+..+++|++|+|++|.|+. +|. +..+++|++|+++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls   96 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS   96 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence            34444444444444  3332 34445555555555555444444555555555555555555 332 2335556666666


Q ss_pred             CCccCCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccC
Q 015448          116 DNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNA  175 (406)
Q Consensus       116 ~N~i~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~  175 (406)
                      +|.|+.++....+         ..+++|++|+|++|+++..+.+....+..+++|+.|+.
T Consensus        97 ~N~i~~~~~~~~~---------~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           97 GNKIKDLSTIEPL---------KKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             TSCCCSHHHHGGG---------GGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             CCcCCChHHHHHH---------hhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            6655554321111         13345666666666666665554445566666666654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.59  E-value=1.4e-15  Score=147.21  Aligned_cols=169  Identities=17%  Similarity=0.200  Sum_probs=135.3

Q ss_pred             ccccccccCCCCC----CCCCCccEEEeeCCCCCCCC-CCCCC-----CCCcEEEccCCCCCCCC--CCCCCCCCcEEEe
Q 015448            3 RLSTQQILKDNKT----CDPNSIKSLSLTHKALSDVS-CLTDF-----NNLERLDLSSNNLTSLE--GLKHCVNLKWLSL   70 (406)
Q Consensus         3 ~Ls~n~i~~~~~~----~~~~~L~~L~Ls~n~l~~i~-~l~~l-----~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~L   70 (406)
                      +|+.|.+....+.    ..+++|++|+|++|.|+.++ .+..+     ++|++|+|++|.|+.++  .|..+++|++|+|
T Consensus       101 ~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  180 (312)
T 1wwl_A          101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDL  180 (312)
T ss_dssp             EEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEEC
T ss_pred             EccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEEC
Confidence            4667777654332    56899999999999999886 33344     89999999999999886  4889999999999


Q ss_pred             cCCCCCC---CC-C--CCCCCCCcEEEcCCCCCCCCcC-----CCCCCCCCEEEccCCccCCcc---ccCCCCCCcEeeC
Q 015448           71 VQNKLQS---LK-G--IEGLSKPTVLNVGKNKLRSMDD-----VTSVVSLRALILNDNEIVSIC---KLDQMKELNTLGM  136 (406)
Q Consensus        71 s~N~l~~---l~-~--l~~l~~L~~L~Ls~N~i~~l~~-----l~~l~~L~~L~Ls~N~i~~l~---~l~~L~~L~~L~L  136 (406)
                      ++|.+..   ++ .  +..+++|++|+|++|.|+.++.     +..+++|++|+|++|.|+...   .+..+++|++|+|
T Consensus       181 s~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L  260 (312)
T 1wwl_A          181 SDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL  260 (312)
T ss_dssp             CSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEEC
T ss_pred             CCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEEC
Confidence            9999764   22 3  3889999999999999996542     357799999999999998854   3666899999999


Q ss_pred             C---------CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCc
Q 015448          137 D---------SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNAR  176 (406)
Q Consensus       137 s---------~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~  176 (406)
                      +         .-.++|+.|+|++|.|+.++.     +..+++|+.|+..
T Consensus       261 s~N~l~~ip~~~~~~L~~L~Ls~N~l~~~p~-----~~~l~~L~~L~L~  304 (312)
T 1wwl_A          261 SFTGLKQVPKGLPAKLSVLDLSYNRLDRNPS-----PDELPQVGNLSLK  304 (312)
T ss_dssp             TTSCCSSCCSSCCSEEEEEECCSSCCCSCCC-----TTTSCEEEEEECT
T ss_pred             CCCccChhhhhccCCceEEECCCCCCCCChh-----HhhCCCCCEEecc
Confidence            8         122689999999999998864     5678888877643

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.59  E-value=4.9e-15  Score=153.36  Aligned_cols=167  Identities=20%  Similarity=0.264  Sum_probs=124.8

Q ss_pred             ccccccCCCCCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCCCC-
Q 015448            5 STQQILKDNKTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSLK-   79 (406)
Q Consensus         5 s~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~l~-   79 (406)
                      +.+.+..+.. ..+++|++|+|++|.|+.++  .|..+++|++|+|++|.|+.++  .|..+++|++|+|++|.++.++ 
T Consensus        13 ~~~~l~~ip~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~   91 (549)
T 2z81_A           13 RSRSFTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS   91 (549)
T ss_dssp             TTSCCSSCCS-CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH
T ss_pred             CCCccccccc-cCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH
Confidence            3344444433 33578899999999988774  6888899999999999988875  3888899999999999988877 


Q ss_pred             C-CCCCCCCcEEEcCCCCCCCC--c-CCCCCCCCCEEEccCCc-cCCcc--ccCCCCCCcEeeCC------------CCC
Q 015448           80 G-IEGLSKPTVLNVGKNKLRSM--D-DVTSVVSLRALILNDNE-IVSIC--KLDQMKELNTLGMD------------SYF  140 (406)
Q Consensus        80 ~-l~~l~~L~~L~Ls~N~i~~l--~-~l~~l~~L~~L~Ls~N~-i~~l~--~l~~L~~L~~L~Ls------------~~l  140 (406)
                      . +..+++|++|+|++|.++.+  + .+..+++|++|++++|. +..++  .+..+++|++|+++            ..+
T Consensus        92 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  171 (549)
T 2z81_A           92 SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI  171 (549)
T ss_dssp             HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred             HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcc
Confidence            3 88888999999999988864  3 47788889999998887 56665  37778888888876            445


Q ss_pred             CCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccC
Q 015448          141 FNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNA  175 (406)
Q Consensus       141 ~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~  175 (406)
                      ++|++|++++|.+..++..   .+..+++|+.|+.
T Consensus       172 ~~L~~L~l~~n~~~~~~~~---~~~~l~~L~~L~L  203 (549)
T 2z81_A          172 RDIHHLTLHLSESAFLLEI---FADILSSVRYLEL  203 (549)
T ss_dssp             SEEEEEEEECSBSTTHHHH---HHHSTTTBSEEEE
T ss_pred             ccCceEecccCcccccchh---hHhhcccccEEEc
Confidence            6677777777777655432   2445666666554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.58  E-value=1.2e-14  Score=149.68  Aligned_cols=158  Identities=21%  Similarity=0.241  Sum_probs=88.4

Q ss_pred             CccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCC--CCCCCCCCCcEEEecCCCCCCCC----CCCCCCCCcEEEcC
Q 015448           20 SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSL--EGLKHCVNLKWLSLVQNKLQSLK----GIEGLSKPTVLNVG   93 (406)
Q Consensus        20 ~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l--~~l~~L~~L~~L~Ls~N~l~~l~----~l~~l~~L~~L~Ls   93 (406)
                      +|+.|++++|.+..++.+..+++|++|+|++|.++..  ..+..+++|++|+|++|.|+.++    .+..+++|++|+|+
T Consensus       303 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls  382 (520)
T 2z7x_B          303 NIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS  382 (520)
T ss_dssp             CCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECC
T ss_pred             ceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECC
Confidence            4566666666655554445555666666666665552  23555666666666666665432    25555666666666


Q ss_pred             CCCCCC-Cc--CCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC-----------CCCCCCCEEEcCCCCCCCchhH
Q 015448           94 KNKLRS-MD--DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD-----------SYFFNLNNLNLQGNPVAEYDKL  159 (406)
Q Consensus        94 ~N~i~~-l~--~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls-----------~~l~~L~~L~Ls~N~i~~~~~~  159 (406)
                      +|.++. +|  .+..+++|++|+|++|.++....-...++|++|+|+           ..+++|+.|+|++|.++.++..
T Consensus       383 ~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~  462 (520)
T 2z7x_B          383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDG  462 (520)
T ss_dssp             SSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTT
T ss_pred             CCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHH
Confidence            666555 44  244555666666666655432111111455555555           3556778888888888776653


Q ss_pred             HHHHHhcCCCccccc--CcCCCh
Q 015448          160 AKKVKTLLPNLCIFN--ARPIDR  180 (406)
Q Consensus       160 ~~~~~~~lp~L~~Ld--~~~~~~  180 (406)
                         .+..+++|+.|+  ++++.+
T Consensus       463 ---~~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          463 ---IFDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             ---TTTTCTTCCEEECCSSCBCC
T ss_pred             ---HhccCCcccEEECcCCCCcc
Confidence               245677777554  344443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.58  E-value=9e-16  Score=148.95  Aligned_cols=155  Identities=15%  Similarity=0.242  Sum_probs=103.1

Q ss_pred             CCccEEEeeCCCCCC---CC-CCCCCCCCcEEEccC-CCCCC-CC-CCCCCCCCcEEEecCCCCC-CCC-CCCCCCCCcE
Q 015448           19 NSIKSLSLTHKALSD---VS-CLTDFNNLERLDLSS-NNLTS-LE-GLKHCVNLKWLSLVQNKLQ-SLK-GIEGLSKPTV   89 (406)
Q Consensus        19 ~~L~~L~Ls~n~l~~---i~-~l~~l~~L~~L~Ls~-N~l~~-l~-~l~~L~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~   89 (406)
                      .+|+.|+|++|.+++   ++ .+..+++|++|+|++ |.+.. +| .|..+++|++|+|++|.|+ .+| .+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            567777777777774   44 667777777777773 66653 33 3677777777777777776 555 4777777777


Q ss_pred             EEcCCCCCCC-Cc-CCCCCCCCCEEEccCCccC-Ccc-ccCCCC-CCcEeeCC------------CCCCCCCEEEcCCCC
Q 015448           90 LNVGKNKLRS-MD-DVTSVVSLRALILNDNEIV-SIC-KLDQMK-ELNTLGMD------------SYFFNLNNLNLQGNP  152 (406)
Q Consensus        90 L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~N~i~-~l~-~l~~L~-~L~~L~Ls------------~~l~~L~~L~Ls~N~  152 (406)
                      |+|++|.|+. +| .+..+++|++|+|++|.|+ .++ .+..++ .|++|+|+            ..++ |+.|+|++|.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            7777777763 44 4667777777777777776 444 366665 77777776            2333 7777777777


Q ss_pred             CCCchhHHHHHHhcCCCcccccCcC
Q 015448          153 VAEYDKLAKKVKTLLPNLCIFNARP  177 (406)
Q Consensus       153 i~~~~~~~~~~~~~lp~L~~Ld~~~  177 (406)
                      +....+.   .+..+++|+.|+...
T Consensus       209 l~~~~~~---~~~~l~~L~~L~L~~  230 (313)
T 1ogq_A          209 LEGDASV---LFGSDKNTQKIHLAK  230 (313)
T ss_dssp             EEECCGG---GCCTTSCCSEEECCS
T ss_pred             ccCcCCH---HHhcCCCCCEEECCC
Confidence            7654332   245667777666543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.58  E-value=2.5e-15  Score=145.30  Aligned_cols=152  Identities=22%  Similarity=0.260  Sum_probs=122.6

Q ss_pred             ccccccccCCCC------CCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCC---CC---CCCCCCCCcEE
Q 015448            3 RLSTQQILKDNK------TCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTS---LE---GLKHCVNLKWL   68 (406)
Q Consensus         3 ~Ls~n~i~~~~~------~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~---l~---~l~~L~~L~~L   68 (406)
                      +|+.|.|....+      ...+++|++|+|++|.|+.++  .+..+++|++|+|++|.+..   ++   .+..+++|++|
T Consensus       123 ~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L  202 (310)
T 4glp_A          123 RLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNL  202 (310)
T ss_dssp             EEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSC
T ss_pred             EeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEE
Confidence            455666654221      234789999999999998876  78899999999999999865   32   24688999999


Q ss_pred             EecCCCCCCCCC-----CCCCCCCcEEEcCCCCCCCC-c-CCCCC---CCCCEEEccCCccCCccccCCCCCCcEeeCC-
Q 015448           69 SLVQNKLQSLKG-----IEGLSKPTVLNVGKNKLRSM-D-DVTSV---VSLRALILNDNEIVSICKLDQMKELNTLGMD-  137 (406)
Q Consensus        69 ~Ls~N~l~~l~~-----l~~l~~L~~L~Ls~N~i~~l-~-~l~~l---~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls-  137 (406)
                      +|++|.|+.++.     +..+++|++|+|++|.|+.+ | .+..+   ++|++|+|++|.|+.++... .++|++|+|+ 
T Consensus       203 ~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~-~~~L~~L~Ls~  281 (310)
T 4glp_A          203 ALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL-PAKLRVLDLSS  281 (310)
T ss_dssp             BCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC-CSCCSCEECCS
T ss_pred             ECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh-cCCCCEEECCC
Confidence            999999987763     46789999999999999986 4 35544   79999999999999887522 3789999998 


Q ss_pred             ---------CCCCCCCEEEcCCCCCCC
Q 015448          138 ---------SYFFNLNNLNLQGNPVAE  155 (406)
Q Consensus       138 ---------~~l~~L~~L~Ls~N~i~~  155 (406)
                               ..+++|+.|+|++|+|+.
T Consensus       282 N~l~~~~~~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          282 NRLNRAPQPDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCCCSCCCTTSCCCCSCEECSSTTTSC
T ss_pred             CcCCCCchhhhCCCccEEECcCCCCCC
Confidence                     567899999999999975

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=3.4e-15  Score=128.57  Aligned_cols=121  Identities=25%  Similarity=0.351  Sum_probs=105.0

Q ss_pred             CCCCCccEEEeeCCCCC--CCC-CCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCC-CCC-CCCCCCCcEE
Q 015448           16 CDPNSIKSLSLTHKALS--DVS-CLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQS-LKG-IEGLSKPTVL   90 (406)
Q Consensus        16 ~~~~~L~~L~Ls~n~l~--~i~-~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~-l~~-l~~l~~L~~L   90 (406)
                      ..+++|+.|++++|.++  .++ .+..+++|++|+|++|.|+.++.+..+++|++|+|++|.|+. +|. +..+++|++|
T Consensus        14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            44688999999999998  666 678999999999999999999789999999999999999998 674 5669999999


Q ss_pred             EcCCCCCCCC---cCCCCCCCCCEEEccCCccCCccc-----cCCCCCCcEeeC
Q 015448           91 NVGKNKLRSM---DDVTSVVSLRALILNDNEIVSICK-----LDQMKELNTLGM  136 (406)
Q Consensus        91 ~Ls~N~i~~l---~~l~~l~~L~~L~Ls~N~i~~l~~-----l~~L~~L~~L~L  136 (406)
                      ++++|.|+.+   ..+..+++|++|++++|.++.++.     +..+++|+.|++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            9999999996   358899999999999999998875     556665555554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.58  E-value=1.8e-14  Score=132.87  Aligned_cols=142  Identities=21%  Similarity=0.319  Sum_probs=120.2

Q ss_pred             cEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCCCC
Q 015448           22 KSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGKNK   96 (406)
Q Consensus        22 ~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~   96 (406)
                      +.++++++.++.+| .+.  ++|++|+|++|.|+.++  .|..+++|++|+|++|.|+.++  .|..+++|++|+|++|.
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            67999999999998 343  78999999999999886  4899999999999999999874  59999999999999999


Q ss_pred             CCCCcC--CCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCccc
Q 015448           97 LRSMDD--VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCI  172 (406)
Q Consensus        97 i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~  172 (406)
                      |+.++.  +..+++|++|+|++|.|+.++.  +.            .+++|+.|+|++|.|..++..   .+..+++|+.
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~------------~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~  156 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ------------DLHNLNLLSLYDNKLQTIAKG---TFSPLRAIQT  156 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT------------TCTTCCEEECCSSCCSCCCTT---TTTTCTTCCE
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcC------------CCCCCCEEECCCCcCCEECHH---HHhCCCCCCE
Confidence            999874  6889999999999999998854  33            456899999999999988753   2567888886


Q ss_pred             cc--CcCCCh
Q 015448          173 FN--ARPIDR  180 (406)
Q Consensus       173 Ld--~~~~~~  180 (406)
                      |+  .+++..
T Consensus       157 L~L~~N~~~c  166 (220)
T 2v9t_B          157 MHLAQNPFIC  166 (220)
T ss_dssp             EECCSSCEEC
T ss_pred             EEeCCCCcCC
Confidence            65  445443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.58  E-value=1.3e-14  Score=143.53  Aligned_cols=157  Identities=25%  Similarity=0.336  Sum_probs=130.5

Q ss_pred             ccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCCC--CC-CCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCC
Q 015448           21 IKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLEG--LK-HCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGK   94 (406)
Q Consensus        21 L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~~--l~-~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~   94 (406)
                      -+.++++++.|+.+| .+  ...|++|+|++|.|+.++.  +. .+++|++|+|++|.|+.++  .|..+++|++|+|++
T Consensus        20 ~~~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           20 SNILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TTEEECCSSCCSSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            368999999999998 33  3569999999999998864  65 8999999999999999888  499999999999999


Q ss_pred             CCCCCCcC--CCCCCCCCEEEccCCccCCcc--ccCCCCCCcEeeCC---------------CCCCCCCEEEcCCCCCCC
Q 015448           95 NKLRSMDD--VTSVVSLRALILNDNEIVSIC--KLDQMKELNTLGMD---------------SYFFNLNNLNLQGNPVAE  155 (406)
Q Consensus        95 N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~--~l~~L~~L~~L~Ls---------------~~l~~L~~L~Ls~N~i~~  155 (406)
                      |.|+.++.  +..+++|++|+|++|.|+.+.  .+..+++|+.|+|+               ..+++|+.|+|++|.|..
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            99999863  789999999999999999885  38899999999998               137899999999999998


Q ss_pred             chhHHHHHHhcCCCc--c--cccCcCCChhh
Q 015448          156 YDKLAKKVKTLLPNL--C--IFNARPIDRIT  182 (406)
Q Consensus       156 ~~~~~~~~~~~lp~L--~--~Ld~~~~~~~~  182 (406)
                      ++..   .+..++.+  +  .|.++++.+..
T Consensus       178 l~~~---~~~~l~~~~l~~l~l~~N~~~C~C  205 (361)
T 2xot_A          178 LPLT---DLQKLPAWVKNGLYLHNNPLECDC  205 (361)
T ss_dssp             CCHH---HHHHSCHHHHTTEECCSSCEECCH
T ss_pred             cCHH---HhhhccHhhcceEEecCCCccCCc
Confidence            8743   24556653  3  45566665443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.57  E-value=1.4e-14  Score=146.46  Aligned_cols=121  Identities=20%  Similarity=0.364  Sum_probs=93.3

Q ss_pred             CCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCC-CCC--CCCCCCCCcEEEecCCCCCCC-C-CCCCCCCCcE
Q 015448           17 DPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLT-SLE--GLKHCVNLKWLSLVQNKLQSL-K-GIEGLSKPTV   89 (406)
Q Consensus        17 ~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~-~l~--~l~~L~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~   89 (406)
                      .+++|++|+|++|.|+.+.  .|..+++|++|+|++|.+. .++  .|..+++|++|+|++|.++.+ | .+..+++|++
T Consensus        28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  107 (455)
T 3v47_A           28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV  107 (455)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred             CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence            3577888888888888763  6788888888888888876 333  377888888888888888866 3 5788888888


Q ss_pred             EEcCCCCCCC--CcC--CCCCCCCCEEEccCCccCCccc---cCCCCCCcEeeCC
Q 015448           90 LNVGKNKLRS--MDD--VTSVVSLRALILNDNEIVSICK---LDQMKELNTLGMD  137 (406)
Q Consensus        90 L~Ls~N~i~~--l~~--l~~l~~L~~L~Ls~N~i~~l~~---l~~L~~L~~L~Ls  137 (406)
                      |+|++|.++.  ++.  +..+++|++|+|++|.|+.+..   +..+++|++|+|+
T Consensus       108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  162 (455)
T 3v47_A          108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT  162 (455)
T ss_dssp             EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECT
T ss_pred             EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCC
Confidence            8888888876  223  7778888888888888877632   6778888888877

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.57  E-value=5.4e-14  Score=149.31  Aligned_cols=69  Identities=20%  Similarity=0.209  Sum_probs=44.2

Q ss_pred             CCCCEEEccCCccCCccccCCCCCCcEeeCC--------CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccC--c
Q 015448          107 VSLRALILNDNEIVSICKLDQMKELNTLGMD--------SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNA--R  176 (406)
Q Consensus       107 ~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls--------~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~--~  176 (406)
                      ++|+.|+|++|.|+.++  ..+++|++|+|+        ..+++|+.|+|++|.|+.++.    .+..+++|+.|+.  +
T Consensus       221 ~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N~L~~lp~----~l~~l~~L~~L~L~~N  294 (622)
T 3g06_A          221 SGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPE----SLIHLSSETTVNLEGN  294 (622)
T ss_dssp             TTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCCSCCG----GGGGSCTTCEEECCSC
T ss_pred             CCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCCcCCcccccCcEEeCCCCCCCcCCH----HHhhccccCEEEecCC
Confidence            45666666666666555  344666777666        345678888888888887764    2567888886654  4


Q ss_pred             CCChh
Q 015448          177 PIDRI  181 (406)
Q Consensus       177 ~~~~~  181 (406)
                      ++...
T Consensus       295 ~l~~~  299 (622)
T 3g06_A          295 PLSER  299 (622)
T ss_dssp             CCCHH
T ss_pred             CCCCc
Confidence            55543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.57  E-value=1.4e-14  Score=151.85  Aligned_cols=153  Identities=23%  Similarity=0.333  Sum_probs=120.4

Q ss_pred             ccccccCCCCCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCCC-C
Q 015448            5 STQQILKDNKTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSL-K   79 (406)
Q Consensus         5 s~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~l-~   79 (406)
                      +.+.+..+.. ..+++|++|+|++|.++.++  .|..+++|++|+|++|.|+.++  .|.++++|++|+|++|.|+.+ |
T Consensus        19 ~~~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p   97 (606)
T 3vq2_A           19 MDQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP   97 (606)
T ss_dssp             TTSCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCT
T ss_pred             cCCCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccCh
Confidence            3344444432 34688999999999998875  6889999999999999998874  388899999999999999887 4


Q ss_pred             -CCCCCCCCcEEEcCCCCCCCCc--CCCCCCCCCEEEccCCccCC--ccc-cCCCCCCcEeeCCC------------CCC
Q 015448           80 -GIEGLSKPTVLNVGKNKLRSMD--DVTSVVSLRALILNDNEIVS--ICK-LDQMKELNTLGMDS------------YFF  141 (406)
Q Consensus        80 -~l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~--l~~-l~~L~~L~~L~Ls~------------~l~  141 (406)
                       .|..+++|++|+|++|.++.++  .+..+++|++|+|++|.++.  ++. +..+++|++|+|+.            .++
T Consensus        98 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  177 (606)
T 3vq2_A           98 GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR  177 (606)
T ss_dssp             TSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHH
T ss_pred             hhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhh
Confidence             5889999999999999998876  57889999999999999885  443 88888888888871            111


Q ss_pred             C----CCEEEcCCCCCCCchh
Q 015448          142 N----LNNLNLQGNPVAEYDK  158 (406)
Q Consensus       142 ~----L~~L~Ls~N~i~~~~~  158 (406)
                      +    +..|++++|.+..++.
T Consensus       178 ~L~~~l~~L~l~~n~l~~~~~  198 (606)
T 3vq2_A          178 ENPQVNLSLDMSLNPIDFIQD  198 (606)
T ss_dssp             HCTTCCCEEECTTCCCCEECT
T ss_pred             ccccccceeeccCCCcceeCc
Confidence            2    4478888888877654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.57  E-value=1.7e-14  Score=153.44  Aligned_cols=156  Identities=23%  Similarity=0.297  Sum_probs=89.6

Q ss_pred             ccccccccCCCC--CCCCCCccEEEeeCCCCCC-CC--CCCCCCCCcEEEccCCCCCCCC--------------------
Q 015448            3 RLSTQQILKDNK--TCDPNSIKSLSLTHKALSD-VS--CLTDFNNLERLDLSSNNLTSLE--------------------   57 (406)
Q Consensus         3 ~Ls~n~i~~~~~--~~~~~~L~~L~Ls~n~l~~-i~--~l~~l~~L~~L~Ls~N~l~~l~--------------------   57 (406)
                      +|+.|.+..+.+  +..+++|+.|+|++|.++. ++  .+..+++|++|+|++|.+..++                    
T Consensus       387 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l  466 (680)
T 1ziw_A          387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL  466 (680)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCC
T ss_pred             ECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccc
Confidence            345555554432  3446667777777776653 32  4555566666666665544332                    


Q ss_pred             --------CCCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCCCCCCCCc----------CCCCCCCCCEEEccCC
Q 015448           58 --------GLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGKNKLRSMD----------DVTSVVSLRALILNDN  117 (406)
Q Consensus        58 --------~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~i~~l~----------~l~~l~~L~~L~Ls~N  117 (406)
                              .+..+++|++|+|++|.|+.++  .+..+++|++|+|++|.++.++          .+..+++|++|+|++|
T Consensus       467 ~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N  546 (680)
T 1ziw_A          467 KNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN  546 (680)
T ss_dssp             BCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS
T ss_pred             cccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC
Confidence                    2455566666666666666555  2556666666666666655431          1455566666666666


Q ss_pred             ccCCccc--cCCCCCCcEeeCC------------CCCCCCCEEEcCCCCCCCchh
Q 015448          118 EIVSICK--LDQMKELNTLGMD------------SYFFNLNNLNLQGNPVAEYDK  158 (406)
Q Consensus       118 ~i~~l~~--l~~L~~L~~L~Ls------------~~l~~L~~L~Ls~N~i~~~~~  158 (406)
                      .|+.++.  +..+++|++|+|+            ..+++|+.|+|++|.++.++.
T Consensus       547 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~  601 (680)
T 1ziw_A          547 GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK  601 (680)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCH
T ss_pred             CCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccCh
Confidence            6666553  5566666666665            345666666666666666554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.57  E-value=2.8e-15  Score=157.22  Aligned_cols=153  Identities=20%  Similarity=0.312  Sum_probs=96.7

Q ss_pred             CCCccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCC---CCCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEE
Q 015448           18 PNSIKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLE---GLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLN   91 (406)
Q Consensus        18 ~~~L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~---~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~   91 (406)
                      +++|++|+|++|.++.++ .+..+++|++|+|++|.+..++   .+..+++|++|+|++|.+..+.  .+..+++|++|+
T Consensus       375 ~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  454 (606)
T 3vq2_A          375 TNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK  454 (606)
T ss_dssp             CSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred             CCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEE
Confidence            455555555555555544 5556666666666666666552   3566677777777777766433  366677777777


Q ss_pred             cCCCCCCC--Cc-CCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC------------CCCCCCCEEEcCCCCCC
Q 015448           92 VGKNKLRS--MD-DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD------------SYFFNLNNLNLQGNPVA  154 (406)
Q Consensus        92 Ls~N~i~~--l~-~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls------------~~l~~L~~L~Ls~N~i~  154 (406)
                      |++|.++.  +| .+..+++|++|+|++|.++.++.  +..+++|++|+|+            ..+++|+.|+|++|.++
T Consensus       455 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  534 (606)
T 3vq2_A          455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE  534 (606)
T ss_dssp             CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred             CCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence            77777665  34 35667777777777777766542  6667777777776            45667777777777777


Q ss_pred             CchhHHHHHHhcCC-Cccccc
Q 015448          155 EYDKLAKKVKTLLP-NLCIFN  174 (406)
Q Consensus       155 ~~~~~~~~~~~~lp-~L~~Ld  174 (406)
                      .++..    +..++ +|+.|+
T Consensus       535 ~~p~~----~~~l~~~L~~l~  551 (606)
T 3vq2_A          535 TSKGI----LQHFPKSLAFFN  551 (606)
T ss_dssp             CEESC----GGGSCTTCCEEE
T ss_pred             ccCHh----HhhhcccCcEEE
Confidence            66642    34454 466554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.57  E-value=1.2e-14  Score=159.71  Aligned_cols=64  Identities=16%  Similarity=0.222  Sum_probs=33.6

Q ss_pred             CCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCC-CCCCCCC-CcEEEecCCCCCCCC
Q 015448           16 CDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLE-GLKHCVN-LKWLSLVQNKLQSLK   79 (406)
Q Consensus        16 ~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~-~l~~L~~-L~~L~Ls~N~l~~l~   79 (406)
                      ..+++|+.|+|++|.|+.+|.|..+++|++|+|++|.|+.+| .+..+++ |+.|+|++|.|+.+|
T Consensus       570 ~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp  635 (876)
T 4ecn_A          570 QKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIP  635 (876)
T ss_dssp             TTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCC
T ss_pred             hcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCc
Confidence            344555555555555555555555555555555555555444 2444555 555555555555444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.57  E-value=1.9e-14  Score=150.93  Aligned_cols=143  Identities=25%  Similarity=0.304  Sum_probs=123.0

Q ss_pred             CCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCCCC--CCCCCCCCcE
Q 015448           16 CDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTV   89 (406)
Q Consensus        16 ~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~   89 (406)
                      ..+..+++|+|++|.|+.++  .|..+++|++|+|++|.|+.+.  .|..+++|++|+|++|.+..++  .+..+++|++
T Consensus        30 ~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  109 (606)
T 3t6q_A           30 TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKH  109 (606)
T ss_dssp             TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCE
T ss_pred             CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccE
Confidence            44678999999999999884  7899999999999999998874  4899999999999999998764  5899999999


Q ss_pred             EEcCCCCCCCCc--CCCCCCCCCEEEccCCccCCc--cccCCCCCCcEeeCC------------CCCCCCC--EEEcCCC
Q 015448           90 LNVGKNKLRSMD--DVTSVVSLRALILNDNEIVSI--CKLDQMKELNTLGMD------------SYFFNLN--NLNLQGN  151 (406)
Q Consensus        90 L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l--~~l~~L~~L~~L~Ls------------~~l~~L~--~L~Ls~N  151 (406)
                      |+|++|.|+.++  .+..+++|++|+|++|.++.+  +.+..+++|++|+|+            ..+++|+  .|++++|
T Consensus       110 L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n  189 (606)
T 3t6q_A          110 LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN  189 (606)
T ss_dssp             EECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred             eeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC
Confidence            999999999973  588999999999999999886  456668888888887            4677777  7888888


Q ss_pred             CCCCchh
Q 015448          152 PVAEYDK  158 (406)
Q Consensus       152 ~i~~~~~  158 (406)
                      .+..+++
T Consensus       190 ~l~~~~~  196 (606)
T 3t6q_A          190 DIAGIEP  196 (606)
T ss_dssp             CCCEECT
T ss_pred             ccCccCh
Confidence            8877654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.56  E-value=5.2e-14  Score=146.83  Aligned_cols=143  Identities=24%  Similarity=0.242  Sum_probs=78.0

Q ss_pred             CCCCCccEEEeeCCCCCCC-C-CCCCCCCCcEEEccCCCCCCCC----CCCCCCCCcEEEecCCCCCC-CC--CCCCCCC
Q 015448           16 CDPNSIKSLSLTHKALSDV-S-CLTDFNNLERLDLSSNNLTSLE----GLKHCVNLKWLSLVQNKLQS-LK--GIEGLSK   86 (406)
Q Consensus        16 ~~~~~L~~L~Ls~n~l~~i-~-~l~~l~~L~~L~Ls~N~l~~l~----~l~~L~~L~~L~Ls~N~l~~-l~--~l~~l~~   86 (406)
                      ..+++|++|++++|.++.. + .+..+++|++|+|++|.|+.++    .+..+++|++|+|++|.++. +|  .+..+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            3455566666666666552 2 4555666666666666665543    25555666666666666654 55  2555566


Q ss_pred             CcEEEcCCCCCCCCcCCCCC-CCCCEEEccCCccCCccc-cCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhHHHHHH
Q 015448           87 PTVLNVGKNKLRSMDDVTSV-VSLRALILNDNEIVSICK-LDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVK  164 (406)
Q Consensus        87 L~~L~Ls~N~i~~l~~l~~l-~~L~~L~Ls~N~i~~l~~-l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~~~~~~  164 (406)
                      |++|+|++|.|+... ...+ ++|++|+|++|.|+.++. +..            +++|+.|+|++|.++.++..   .+
T Consensus       430 L~~L~l~~n~l~~~~-~~~l~~~L~~L~L~~N~l~~ip~~~~~------------l~~L~~L~L~~N~l~~l~~~---~~  493 (562)
T 3a79_B          430 ILVLNLSSNMLTGSV-FRCLPPKVKVLDLHNNRIMSIPKDVTH------------LQALQELNVASNQLKSVPDG---VF  493 (562)
T ss_dssp             CCEEECCSSCCCGGG-GSSCCTTCSEEECCSSCCCCCCTTTTS------------SCCCSEEECCSSCCCCCCTT---ST
T ss_pred             CCEEECCCCCCCcch-hhhhcCcCCEEECCCCcCcccChhhcC------------CCCCCEEECCCCCCCCCCHH---HH
Confidence            666666666654321 0111 456666666666655543 333            45666666666666665542   24


Q ss_pred             hcCCCccccc
Q 015448          165 TLLPNLCIFN  174 (406)
Q Consensus       165 ~~lp~L~~Ld  174 (406)
                      ..+++|+.|+
T Consensus       494 ~~l~~L~~L~  503 (562)
T 3a79_B          494 DRLTSLQYIW  503 (562)
T ss_dssp             TTCTTCCCEE
T ss_pred             hcCCCCCEEE
Confidence            4556666543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.56  E-value=3e-14  Score=131.39  Aligned_cols=144  Identities=20%  Similarity=0.300  Sum_probs=120.0

Q ss_pred             ccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCCC---CCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCC
Q 015448           21 IKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLEG---LKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGK   94 (406)
Q Consensus        21 L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~~---l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~   94 (406)
                      -+.|++++|.++.+| .+  ...+++|+|++|.|+.++.   |..+++|++|+|++|.|+.++  .|..+++|++|+|++
T Consensus        13 ~~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            358999999999998 33  3567999999999998842   789999999999999999887  499999999999999


Q ss_pred             CCCCCCcC--CCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCc
Q 015448           95 NKLRSMDD--VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNL  170 (406)
Q Consensus        95 N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L  170 (406)
                      |.|+.++.  +..+++|++|+|++|.|+.+..  +.            .+++|+.|+|++|.|+.+.+.   .+..+++|
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~------------~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L  155 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI------------GLSSVRLLSLYDNQITTVAPG---AFDTLHSL  155 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSST------------TCTTCSEEECTTSCCCCBCTT---TTTTCTTC
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcC------------CCccCCEEECCCCcCCEECHH---HhcCCCCC
Confidence            99999863  8899999999999999998853  33            456899999999999988542   35678899


Q ss_pred             ccccC--cCCChh
Q 015448          171 CIFNA--RPIDRI  181 (406)
Q Consensus       171 ~~Ld~--~~~~~~  181 (406)
                      +.|+.  +++...
T Consensus       156 ~~L~L~~N~l~c~  168 (220)
T 2v70_A          156 STLNLLANPFNCN  168 (220)
T ss_dssp             CEEECCSCCEECS
T ss_pred             CEEEecCcCCcCC
Confidence            87764  454433

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.55  E-value=3.1e-14  Score=151.35  Aligned_cols=151  Identities=16%  Similarity=0.272  Sum_probs=101.2

Q ss_pred             CccEEEeeCCCCCCC-C-CCC-------CCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCCCCC--CCCC--
Q 015448           20 SIKSLSLTHKALSDV-S-CLT-------DFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSLKG--IEGL--   84 (406)
Q Consensus        20 ~L~~L~Ls~n~l~~i-~-~l~-------~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~l~~--l~~l--   84 (406)
                      +|+.|+|++|.|+.. + .+.       .+++|++|+|++|.|+.++.  +..+++|++|+|++|.|+.+|.  +..+  
T Consensus       403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~  482 (636)
T 4eco_A          403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE  482 (636)
T ss_dssp             CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTE
T ss_pred             ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccc
Confidence            566666666666553 2 344       55677777777777776654  4457777777777777777662  2222  


Q ss_pred             -----CCCcEEEcCCCCCCCCcC-CC--CCCCCCEEEccCCccCCccc-cCCCCCCcEeeCC------------------
Q 015448           85 -----SKPTVLNVGKNKLRSMDD-VT--SVVSLRALILNDNEIVSICK-LDQMKELNTLGMD------------------  137 (406)
Q Consensus        85 -----~~L~~L~Ls~N~i~~l~~-l~--~l~~L~~L~Ls~N~i~~l~~-l~~L~~L~~L~Ls------------------  137 (406)
                           ++|+.|+|++|.|+.+|. +.  .+++|+.|+|++|.|+.++. +..+++|++|+|+                  
T Consensus       483 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l  562 (636)
T 4eco_A          483 NFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI  562 (636)
T ss_dssp             ECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTG
T ss_pred             cccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHH
Confidence                 277788888887777763 44  77788888888888877764 6677778887772                  


Q ss_pred             CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCc
Q 015448          138 SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNAR  176 (406)
Q Consensus       138 ~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~  176 (406)
                      ..+++|+.|+|++|.+..++..      ..++|+.|+..
T Consensus       563 ~~l~~L~~L~Ls~N~l~~ip~~------~~~~L~~L~Ls  595 (636)
T 4eco_A          563 TLCPSLTQLQIGSNDIRKVNEK------ITPNISVLDIK  595 (636)
T ss_dssp             GGCSSCCEEECCSSCCCBCCSC------CCTTCCEEECC
T ss_pred             hcCCCCCEEECCCCcCCccCHh------HhCcCCEEECc
Confidence            3567778888888888666642      23667766543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.55  E-value=8.7e-14  Score=147.70  Aligned_cols=71  Identities=27%  Similarity=0.311  Sum_probs=35.0

Q ss_pred             cccccccCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCC
Q 015448            4 LSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK   79 (406)
Q Consensus         4 Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~   79 (406)
                      |+.+.+..+.. ..+++|+.|+|++|.|+.++.  .+++|++|+|++|.|+.++.  .+++|++|+|++|.|+.+|
T Consensus        47 ls~n~L~~lp~-~l~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~  117 (622)
T 3g06_A           47 VGESGLTTLPD-CLPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLP  117 (622)
T ss_dssp             CCSSCCSCCCS-CCCTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCC
T ss_pred             ecCCCcCccCh-hhCCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCC
Confidence            44444443322 223555666666665555544  34555555555555555543  3444455555444444443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.55  E-value=4.1e-14  Score=128.03  Aligned_cols=125  Identities=21%  Similarity=0.295  Sum_probs=108.9

Q ss_pred             cEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCC-CCCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCCCCCC
Q 015448           22 KSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLE-GLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGKNKLR   98 (406)
Q Consensus        22 ~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~-~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~i~   98 (406)
                      +.+++++|.|+.+|.- -.++|++|+|++|.|+.++ .|..+++|++|+|++|.|+.++  .|..+++|++|+|++|.|+
T Consensus        13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~   91 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR   91 (193)
T ss_dssp             TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence            6899999999999831 2468999999999999986 4889999999999999999988  4999999999999999999


Q ss_pred             CCc--CCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhH
Q 015448           99 SMD--DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKL  159 (406)
Q Consensus        99 ~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~  159 (406)
                      .++  .+..+++|++|+|++|.|+.++.  +.            .+++|+.|+|++|++.+.+.+
T Consensus        92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~------------~l~~L~~L~L~~N~~~C~c~l  144 (193)
T 2wfh_A           92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFN------------DLSALSHLAIGANPLYCDCNM  144 (193)
T ss_dssp             BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT------------TCTTCCEEECCSSCEECSGGG
T ss_pred             EeCHHHhCCCCCCCEEECCCCCCCeeChhhhh------------cCccccEEEeCCCCeecCCcC
Confidence            986  48899999999999999998875  33            456889999999999876653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.55  E-value=2.9e-14  Score=156.61  Aligned_cols=171  Identities=16%  Similarity=0.215  Sum_probs=130.4

Q ss_pred             CccccccccCCCCCCCCCCccEEEeeCCCCCCCC-CCCCCCC-CcEEEccCCCCCCCCC-CCCC--CCCcEEEecCCCCC
Q 015448            2 TRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVS-CLTDFNN-LERLDLSSNNLTSLEG-LKHC--VNLKWLSLVQNKLQ   76 (406)
Q Consensus         2 ~~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~-~l~~l~~-L~~L~Ls~N~l~~l~~-l~~L--~~L~~L~Ls~N~l~   76 (406)
                      ++|+.|.+..+..+..+++|+.|+|++|.|+.++ .+..+++ |++|+|++|.|+.+|. +..+  ++|+.|+|++|.|.
T Consensus       578 L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~  657 (876)
T 4ecn_A          578 LDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIG  657 (876)
T ss_dssp             EECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred             EECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCC
Confidence            3567777776666677889999999999999887 7888888 9999999999998875 4444  34899999999886


Q ss_pred             CC-CCCC------CCCCCcEEEcCCCCCCCCcC--CCCCCCCCEEEccCCccCCccc--cC-------CCCCCcEeeCC-
Q 015448           77 SL-KGIE------GLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDNEIVSICK--LD-------QMKELNTLGMD-  137 (406)
Q Consensus        77 ~l-~~l~------~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~--l~-------~L~~L~~L~Ls-  137 (406)
                      .. |.+.      .+++|+.|+|++|.|+.+|.  +..+++|+.|+|++|.|+.++.  +.       .|++|+.|+|+ 
T Consensus       658 g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~  737 (876)
T 4ecn_A          658 SEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF  737 (876)
T ss_dssp             TTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCS
T ss_pred             CccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCC
Confidence            43 3222      44588899999998888873  3478888899999888887764  22       22378888887 


Q ss_pred             ----------C--CCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCc
Q 015448          138 ----------S--YFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNAR  176 (406)
Q Consensus       138 ----------~--~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~  176 (406)
                                .  .+++|+.|+|++|.|..++.    .+..+++|+.|+..
T Consensus       738 N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~----~l~~L~~L~~L~Ls  784 (876)
T 4ecn_A          738 NKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPT----QPLNSSQLKAFGIR  784 (876)
T ss_dssp             SCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCC----GGGGCTTCCEEECC
T ss_pred             CCCccchHHhhhccCCCcCEEEeCCCCCCccch----hhhcCCCCCEEECC
Confidence                      3  67888888888888888754    24578888877664

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.54  E-value=3e-14  Score=147.80  Aligned_cols=143  Identities=26%  Similarity=0.359  Sum_probs=120.7

Q ss_pred             CCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCCCC--CCCCCCCCcE
Q 015448           16 CDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTV   89 (406)
Q Consensus        16 ~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~   89 (406)
                      ..+.+++.|+|++|.|+.++  .|..+++|++|+|++|.|+.++  .|..+++|++|+|++|.++.++  .|..+++|++
T Consensus        25 ~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (570)
T 2z63_A           25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK  104 (570)
T ss_dssp             SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred             CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccc
Confidence            34678999999999999875  7899999999999999999885  3889999999999999999877  5899999999


Q ss_pred             EEcCCCCCCCCcC--CCCCCCCCEEEccCCccCCc--c-ccCCCCCCcEeeCC------------CCCCCC----CEEEc
Q 015448           90 LNVGKNKLRSMDD--VTSVVSLRALILNDNEIVSI--C-KLDQMKELNTLGMD------------SYFFNL----NNLNL  148 (406)
Q Consensus        90 L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l--~-~l~~L~~L~~L~Ls------------~~l~~L----~~L~L  148 (406)
                      |++++|.++.++.  +..+++|++|+|++|.++.+  + .+..+++|++|+++            ..+++|    ..|++
T Consensus       105 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l  184 (570)
T 2z63_A          105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL  184 (570)
T ss_dssp             EECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred             ccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhccc
Confidence            9999999999874  88999999999999999873  4 37888888888887            123344    67888


Q ss_pred             CCCCCCCchh
Q 015448          149 QGNPVAEYDK  158 (406)
Q Consensus       149 s~N~i~~~~~  158 (406)
                      ++|.+..+++
T Consensus       185 ~~n~l~~~~~  194 (570)
T 2z63_A          185 SLNPMNFIQP  194 (570)
T ss_dssp             TTCCCCEECT
T ss_pred             CCCCceecCH
Confidence            8888876653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.54  E-value=6.4e-14  Score=126.36  Aligned_cols=124  Identities=25%  Similarity=0.381  Sum_probs=107.6

Q ss_pred             cEEEeeCCCCCCCCC-CCCCCCCcEEEccCCCCCCCCC---CCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCCC
Q 015448           22 KSLSLTHKALSDVSC-LTDFNNLERLDLSSNNLTSLEG---LKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGKN   95 (406)
Q Consensus        22 ~~L~Ls~n~l~~i~~-l~~l~~L~~L~Ls~N~l~~l~~---l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N   95 (406)
                      +.|++++|.|+.+|. +  ..+|++|+|++|.|+.++.   |..+++|++|+|++|.|+.++  .|..+++|++|+|++|
T Consensus        11 ~~l~~s~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            789999999999983 3  3499999999999998864   789999999999999999884  5999999999999999


Q ss_pred             CCCCCcC--CCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhH
Q 015448           96 KLRSMDD--VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKL  159 (406)
Q Consensus        96 ~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~  159 (406)
                      .|+.++.  +..+++|++|+|++|.|+.+..  +.            .+++|++|+|++|++.+...+
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~------------~l~~L~~L~L~~N~l~c~c~l  144 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE------------HLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSST------------TCTTCCEEECTTCCBCCSGGG
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhh------------cCCCCCEEEeCCCCccCcCcc
Confidence            9999763  8899999999999999988743  33            456899999999999887654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.53  E-value=1.7e-14  Score=150.63  Aligned_cols=122  Identities=25%  Similarity=0.277  Sum_probs=109.7

Q ss_pred             CccccccccCCCC--CCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCC
Q 015448            2 TRLSTQQILKDNK--TCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKL   75 (406)
Q Consensus         2 ~~Ls~n~i~~~~~--~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l   75 (406)
                      ++|+.|.|..+.+  +..+++|++|+|++|.|+.++  .|..+++|++|+|++|.|+.++.  |.+|++|++|+|++|.|
T Consensus        57 LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l  136 (635)
T 4g8a_A           57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL  136 (635)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCC
T ss_pred             EEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcC
Confidence            4788999988864  567899999999999999986  68999999999999999999874  89999999999999999


Q ss_pred             CCCC--CCCCCCCCcEEEcCCCCCCCC--c-CCCCCCCCCEEEccCCccCCcc
Q 015448           76 QSLK--GIEGLSKPTVLNVGKNKLRSM--D-DVTSVVSLRALILNDNEIVSIC  123 (406)
Q Consensus        76 ~~l~--~l~~l~~L~~L~Ls~N~i~~l--~-~l~~l~~L~~L~Ls~N~i~~l~  123 (406)
                      +.++  .|+.+++|++|+|++|.|+.+  | .+..+++|++|+|++|.|+.+.
T Consensus       137 ~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~  189 (635)
T 4g8a_A          137 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  189 (635)
T ss_dssp             CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred             CCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc
Confidence            9998  489999999999999999875  3 4678999999999999998775

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.53  E-value=1.1e-14  Score=154.80  Aligned_cols=96  Identities=16%  Similarity=0.176  Sum_probs=45.9

Q ss_pred             cccccccCCCC---CCCCCCccEEEeeCCCCC-CCCCCCCCCCCcEEEccCCCCCCCCC-CCCCCC-CcEEEecCCCCCC
Q 015448            4 LSTQQILKDNK---TCDPNSIKSLSLTHKALS-DVSCLTDFNNLERLDLSSNNLTSLEG-LKHCVN-LKWLSLVQNKLQS   77 (406)
Q Consensus         4 Ls~n~i~~~~~---~~~~~~L~~L~Ls~n~l~-~i~~l~~l~~L~~L~Ls~N~l~~l~~-l~~L~~-L~~L~Ls~N~l~~   77 (406)
                      |+.|.+..+..   +..+++|+.|+|++|.++ .++.+..+++|++|+|++|.++.+|. +..+++ |++|+|++|.++.
T Consensus       312 L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~  391 (636)
T 4eco_A          312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY  391 (636)
T ss_dssp             CCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSS
T ss_pred             CCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcc
Confidence            44444443332   344555666666666555 44444444455555555555444432 444444 5555555555554


Q ss_pred             CC-CCCCC--CCCcEEEcCCCCCCC
Q 015448           78 LK-GIEGL--SKPTVLNVGKNKLRS   99 (406)
Q Consensus        78 l~-~l~~l--~~L~~L~Ls~N~i~~   99 (406)
                      +| .+..+  ++|++|+|++|.|+.
T Consensus       392 lp~~~~~~~l~~L~~L~Ls~N~l~~  416 (636)
T 4eco_A          392 IPNIFDAKSVSVMSAIDFSYNEIGS  416 (636)
T ss_dssp             CCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred             cchhhhhcccCccCEEECcCCcCCC
Confidence            44 22222  244444444444443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.53  E-value=2.5e-13  Score=120.23  Aligned_cols=128  Identities=30%  Similarity=0.353  Sum_probs=109.2

Q ss_pred             CccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCCCCC--CCCCCCCcEEEcCCC
Q 015448           20 SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSLKG--IEGLSKPTVLNVGKN   95 (406)
Q Consensus        20 ~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N   95 (406)
                      ..+.++++++.++.++. ...++|++|+|++|.++.++.  |..+++|++|+|++|.|+.++.  +..+++|++|+|++|
T Consensus         8 ~~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             ETTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            35789999999999882 234799999999999998864  7899999999999999999883  789999999999999


Q ss_pred             CCCCCcC--CCCCCCCCEEEccCCccCCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchh
Q 015448           96 KLRSMDD--VTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDK  158 (406)
Q Consensus        96 ~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~  158 (406)
                      .|+.++.  +..+++|++|+|++|.|+.++.- .+         ..+++|++|+|++|++.+..+
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~---------~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDG-IF---------DRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT-TT---------TTCTTCCEEECCSSCBCCCHH
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHH-Hh---------cCCcccCEEEecCCCeeccCc
Confidence            9999874  68899999999999999987751 11         145689999999999988765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.52  E-value=9.1e-14  Score=143.13  Aligned_cols=119  Identities=24%  Similarity=0.239  Sum_probs=53.8

Q ss_pred             CCCCccEEEeeCCCCCCC-C-CCCCCCCCcEEEccCCCCCCCC----CCCCCCCCcEEEecCCCCCC-CC--CCCCCCCC
Q 015448           17 DPNSIKSLSLTHKALSDV-S-CLTDFNNLERLDLSSNNLTSLE----GLKHCVNLKWLSLVQNKLQS-LK--GIEGLSKP   87 (406)
Q Consensus        17 ~~~~L~~L~Ls~n~l~~i-~-~l~~l~~L~~L~Ls~N~l~~l~----~l~~L~~L~~L~Ls~N~l~~-l~--~l~~l~~L   87 (406)
                      .+++|++|++++|.++.. + .+..+++|++|+|++|.|+.++    .+..+++|++|+|++|.+.. +|  .+..+++|
T Consensus       322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L  401 (520)
T 2z7x_B          322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL  401 (520)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred             hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence            344455555555554441 2 4444445555555555544332    14444455555555555444 44  14444455


Q ss_pred             cEEEcCCCCCCCC-c-CCCCCCCCCEEEccCCccCCccc-cCCCCCCcEeeCC
Q 015448           88 TVLNVGKNKLRSM-D-DVTSVVSLRALILNDNEIVSICK-LDQMKELNTLGMD  137 (406)
Q Consensus        88 ~~L~Ls~N~i~~l-~-~l~~l~~L~~L~Ls~N~i~~l~~-l~~L~~L~~L~Ls  137 (406)
                      ++|+|++|.++.. + .+.  ++|++|+|++|.|+.++. +..+++|++|+|+
T Consensus       402 ~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~  452 (520)
T 2z7x_B          402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVA  452 (520)
T ss_dssp             CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECC
T ss_pred             CEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECC
Confidence            5555555544331 1 111  344555555555544443 3344445555444

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.52  E-value=1.2e-14  Score=150.81  Aligned_cols=157  Identities=20%  Similarity=0.221  Sum_probs=101.6

Q ss_pred             CCCCCccEEEeeCCCCCCC---C-CCCCCCCCcEEEccCCCCCCCCC-CCCCCCCcEEEecCCCCCCCC---CCCCCCCC
Q 015448           16 CDPNSIKSLSLTHKALSDV---S-CLTDFNNLERLDLSSNNLTSLEG-LKHCVNLKWLSLVQNKLQSLK---GIEGLSKP   87 (406)
Q Consensus        16 ~~~~~L~~L~Ls~n~l~~i---~-~l~~l~~L~~L~Ls~N~l~~l~~-l~~L~~L~~L~Ls~N~l~~l~---~l~~l~~L   87 (406)
                      ..+++|+.|++++|.++.+   + .+..+++|++|+|++|.+..++. +..+++|++|+|++|.+..++   .+..+++|
T Consensus       344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  423 (570)
T 2z63_A          344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL  423 (570)
T ss_dssp             CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred             ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence            3455566666666665544   1 34456666666666666655542 566777777777777766543   36677777


Q ss_pred             cEEEcCCCCCCCC-c-CCCCCCCCCEEEccCCccC--Ccc-ccCCCCCCcEeeCC------------CCCCCCCEEEcCC
Q 015448           88 TVLNVGKNKLRSM-D-DVTSVVSLRALILNDNEIV--SIC-KLDQMKELNTLGMD------------SYFFNLNNLNLQG  150 (406)
Q Consensus        88 ~~L~Ls~N~i~~l-~-~l~~l~~L~~L~Ls~N~i~--~l~-~l~~L~~L~~L~Ls------------~~l~~L~~L~Ls~  150 (406)
                      ++|+|++|.+... + .+..+++|++|+|++|.++  .++ .+..+++|++|+|+            ..+++|+.|+|++
T Consensus       424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  503 (570)
T 2z63_A          424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS  503 (570)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence            7777777777663 2 3666777777777777775  244 36677777777776            4567788888888


Q ss_pred             CCCCCchhHHHHHHhcCCCcccccC
Q 015448          151 NPVAEYDKLAKKVKTLLPNLCIFNA  175 (406)
Q Consensus       151 N~i~~~~~~~~~~~~~lp~L~~Ld~  175 (406)
                      |.++.++..   .+..+++|+.|+.
T Consensus       504 n~l~~~~~~---~~~~l~~L~~L~l  525 (570)
T 2z63_A          504 NQLKSVPDG---IFDRLTSLQKIWL  525 (570)
T ss_dssp             SCCSCCCTT---TTTTCTTCCEEEC
T ss_pred             CcCCCCCHH---HhhcccCCcEEEe
Confidence            877776542   2456777776553

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.51  E-value=1.2e-13  Score=124.92  Aligned_cols=122  Identities=22%  Similarity=0.363  Sum_probs=106.7

Q ss_pred             CccccccccCCCCCCCCCCccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCCC
Q 015448            2 TRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSL   78 (406)
Q Consensus         2 ~~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~l   78 (406)
                      ++++.+.+..+.. ..+.+|++|+|++|.|+.++ .|..+++|++|+|++|.|+.++.  |..+++|++|+|++|.|+.+
T Consensus        15 l~~~~~~l~~ip~-~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i   93 (193)
T 2wfh_A           15 VRCSNKGLKVLPK-GIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI   93 (193)
T ss_dssp             EECTTSCCSSCCS-CCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred             EEcCCCCCCcCCC-CCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEe
Confidence            3566677766543 34689999999999999997 88899999999999999999864  89999999999999999998


Q ss_pred             C--CCCCCCCCcEEEcCCCCCCCCcC--CCCCCCCCEEEccCCccCCccc
Q 015448           79 K--GIEGLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDNEIVSICK  124 (406)
Q Consensus        79 ~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~  124 (406)
                      +  .|..+++|++|+|++|.|+.++.  +..+++|+.|+|++|.+..-..
T Consensus        94 ~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~  143 (193)
T 2wfh_A           94 PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN  143 (193)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             CHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence            8  49999999999999999999873  7889999999999999876543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.50  E-value=2.6e-15  Score=149.29  Aligned_cols=61  Identities=21%  Similarity=0.211  Sum_probs=34.0

Q ss_pred             CCCCCccEEEeeCCCCCCCC------------CCCCCCCCcEEEccCCCCCC-----CC-CCCCCCCCcEEEecCCCCC
Q 015448           16 CDPNSIKSLSLTHKALSDVS------------CLTDFNNLERLDLSSNNLTS-----LE-GLKHCVNLKWLSLVQNKLQ   76 (406)
Q Consensus        16 ~~~~~L~~L~Ls~n~l~~i~------------~l~~l~~L~~L~Ls~N~l~~-----l~-~l~~L~~L~~L~Ls~N~l~   76 (406)
                      ..+++|++|+|++|.+..+.            .|..+++|++|+|++|.|+.     ++ .+..+++|++|+|++|.|+
T Consensus        57 ~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~  135 (386)
T 2ca6_A           57 ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG  135 (386)
T ss_dssp             TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             HhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence            34566666666666554331            12456666666666666665     22 2444555555555555554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.50  E-value=5.4e-14  Score=152.45  Aligned_cols=96  Identities=23%  Similarity=0.352  Sum_probs=44.3

Q ss_pred             ccccccccCCCCC---CCCCCccEEEeeCCCCCCCC--C---CCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCC
Q 015448            3 RLSTQQILKDNKT---CDPNSIKSLSLTHKALSDVS--C---LTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNK   74 (406)
Q Consensus         3 ~Ls~n~i~~~~~~---~~~~~L~~L~Ls~n~l~~i~--~---l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~   74 (406)
                      +|+.|.+....+.   ..+++|++|+|++|.++...  .   +..+++|++|+|++|.++...++..+++|++|+|++|.
T Consensus       132 ~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~  211 (768)
T 3rgz_A          132 NVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNN  211 (768)
T ss_dssp             ECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSC
T ss_pred             ECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCc
Confidence            3445554433221   34566666666666665432  1   44444455555544444443333444444444444444


Q ss_pred             CCC-CCCCCCCCCCcEEEcCCCCCC
Q 015448           75 LQS-LKGIEGLSKPTVLNVGKNKLR   98 (406)
Q Consensus        75 l~~-l~~l~~l~~L~~L~Ls~N~i~   98 (406)
                      +.. +|.+..+++|++|+|++|.++
T Consensus       212 l~~~~~~l~~l~~L~~L~Ls~n~l~  236 (768)
T 3rgz_A          212 FSTGIPFLGDCSALQHLDISGNKLS  236 (768)
T ss_dssp             CCSCCCBCTTCCSCCEEECCSSCCC
T ss_pred             CCCCCcccccCCCCCEEECcCCcCC
Confidence            443 223444444444444444443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.50  E-value=4.2e-14  Score=154.89  Aligned_cols=151  Identities=20%  Similarity=0.251  Sum_probs=119.8

Q ss_pred             cccccccCCCCCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCC-CCCCC--CCCCCCCCcEEEecCCCCCCC
Q 015448            4 LSTQQILKDNKTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNN-LTSLE--GLKHCVNLKWLSLVQNKLQSL   78 (406)
Q Consensus         4 Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~-l~~l~--~l~~L~~L~~L~Ls~N~l~~l   78 (406)
                      .+.+.+..+..  .+++|++|+|++|.|+.+.  .|..+++|++|+|++|. +..++  .|.++++|++|+|++|.|..+
T Consensus        11 cs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~   88 (844)
T 3j0a_A           11 YRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL   88 (844)
T ss_dssp             ESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE
T ss_pred             ccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc
Confidence            34445555544  6789999999999998874  78899999999999995 44443  488999999999999999977


Q ss_pred             -C-CCCCCCCCcEEEcCCCCCCC-Cc-C--CCCCCCCCEEEccCCccCCcc---ccCCCCCCcEeeCCC-----------
Q 015448           79 -K-GIEGLSKPTVLNVGKNKLRS-MD-D--VTSVVSLRALILNDNEIVSIC---KLDQMKELNTLGMDS-----------  138 (406)
Q Consensus        79 -~-~l~~l~~L~~L~Ls~N~i~~-l~-~--l~~l~~L~~L~Ls~N~i~~l~---~l~~L~~L~~L~Ls~-----------  138 (406)
                       | .|..+++|++|+|++|.++. ++ .  +..+++|++|+|++|.++.+.   .+..+++|++|+|+.           
T Consensus        89 ~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l  168 (844)
T 3j0a_A           89 HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL  168 (844)
T ss_dssp             CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGG
T ss_pred             CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHc
Confidence             4 58999999999999999986 33 3  788999999999999998763   378888888888871           


Q ss_pred             -CC--CCCCEEEcCCCCCCCc
Q 015448          139 -YF--FNLNNLNLQGNPVAEY  156 (406)
Q Consensus       139 -~l--~~L~~L~Ls~N~i~~~  156 (406)
                       .+  ++|+.|+|++|.+...
T Consensus       169 ~~l~~~~L~~L~L~~n~l~~~  189 (844)
T 3j0a_A          169 EPLQGKTLSFFSLAANSLYSR  189 (844)
T ss_dssp             HHHHHCSSCCCEECCSBSCCC
T ss_pred             ccccCCccceEECCCCccccc
Confidence             11  6778888888877654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.50  E-value=7.5e-14  Score=151.37  Aligned_cols=158  Identities=24%  Similarity=0.282  Sum_probs=79.8

Q ss_pred             CCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCC-CCCCCCCCCcEEEecCCCCCC-CC-CCCCCCCCcEEEc
Q 015448           16 CDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSL-EGLKHCVNLKWLSLVQNKLQS-LK-GIEGLSKPTVLNV   92 (406)
Q Consensus        16 ~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l-~~l~~L~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~L   92 (406)
                      ..+++|++|++++|.+++...+..+++|++|+|++|.++.. +.+..+++|++|+|++|.++. +| .+..+++|++|+|
T Consensus       175 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  254 (768)
T 3rgz_A          175 DGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI  254 (768)
T ss_dssp             TCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEEC
T ss_pred             ccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEEC
Confidence            34455555555555555444445555555555555555442 335555555555555555552 23 3555555555555


Q ss_pred             CCCCCCCCcCCCCCCCCCEEEccCCccC-Cccc-cCC-CCCCcEeeCC------------CCCCCCCEEEcCCCCCC-Cc
Q 015448           93 GKNKLRSMDDVTSVVSLRALILNDNEIV-SICK-LDQ-MKELNTLGMD------------SYFFNLNNLNLQGNPVA-EY  156 (406)
Q Consensus        93 s~N~i~~l~~l~~l~~L~~L~Ls~N~i~-~l~~-l~~-L~~L~~L~Ls------------~~l~~L~~L~Ls~N~i~-~~  156 (406)
                      ++|.+........+++|++|+|++|.++ .++. +.. +++|++|+|+            ..+++|+.|+|++|.+. .+
T Consensus       255 s~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i  334 (768)
T 3rgz_A          255 SSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL  334 (768)
T ss_dssp             CSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred             CCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcC
Confidence            5555543221124555555555555554 3332 222 3555555555            34555666666666554 33


Q ss_pred             hhHHHHHHhcCCCcccccCc
Q 015448          157 DKLAKKVKTLLPNLCIFNAR  176 (406)
Q Consensus       157 ~~~~~~~~~~lp~L~~Ld~~  176 (406)
                      +.   ..+..+++|+.|+..
T Consensus       335 p~---~~l~~l~~L~~L~Ls  351 (768)
T 3rgz_A          335 PM---DTLLKMRGLKVLDLS  351 (768)
T ss_dssp             CH---HHHTTCTTCCEEECC
T ss_pred             CH---HHHhcCCCCCEEeCc
Confidence            32   124556666665544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.49  E-value=4.2e-13  Score=118.82  Aligned_cols=120  Identities=28%  Similarity=0.409  Sum_probs=103.5

Q ss_pred             ccccccccCCCCCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCCC
Q 015448            3 RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSL   78 (406)
Q Consensus         3 ~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~l   78 (406)
                      +++.+.+..+. ...+++|+.|+|++|.|+.++  .+..+++|++|+|++|.|+.++.  |..+++|++|+|++|.|+.+
T Consensus        13 ~~~~~~l~~~p-~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~   91 (177)
T 2o6r_A           13 RCNSKGLTSVP-TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL   91 (177)
T ss_dssp             ECCSSCCSSCC-TTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             EecCCCCccCC-CCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcccc
Confidence            44555555544 344689999999999999987  57899999999999999999875  78999999999999999998


Q ss_pred             CC--CCCCCCCcEEEcCCCCCCCCcC--CCCCCCCCEEEccCCccCCcc
Q 015448           79 KG--IEGLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDNEIVSIC  123 (406)
Q Consensus        79 ~~--l~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~  123 (406)
                      +.  +..+++|++|+|++|.|+.++.  +..+++|++|+|++|.+....
T Consensus        92 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           92 PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            83  7899999999999999999874  678999999999999987643

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.48  E-value=4.6e-14  Score=148.31  Aligned_cols=121  Identities=26%  Similarity=0.401  Sum_probs=105.8

Q ss_pred             CCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCC-CCCCCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccC
Q 015448           42 NLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK-GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIV  120 (406)
Q Consensus        42 ~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~  120 (406)
                      .|++|+|++|.|+.+|.|..+++|+.|+|++|.|+.+| .++.+++|+.|+|++|.|+.+|.+..+++|+.|+|++|.|+
T Consensus       442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~  521 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQ  521 (567)
T ss_dssp             TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCC
T ss_pred             CceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCC
Confidence            58899999999999988999999999999999999998 68999999999999999999998899999999999999998


Q ss_pred             Cc--cc-cCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCccccc
Q 015448          121 SI--CK-LDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFN  174 (406)
Q Consensus       121 ~l--~~-l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld  174 (406)
                      .+  +. +.            .+++|+.|+|++|+++..++....++..+|+|+.|+
T Consensus       522 ~~~~p~~l~------------~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          522 QSAAIQPLV------------SCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             SSSTTGGGG------------GCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCcHHHh------------cCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            87  32 43            456889999999999988776666777899998875

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.48  E-value=5.4e-13  Score=139.12  Aligned_cols=132  Identities=19%  Similarity=0.215  Sum_probs=71.7

Q ss_pred             CCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCC-CC-CCCCCCCCcEEEcCCCCCCCCc----CCCCCCCCCEEEcc
Q 015448           42 NLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQS-LK-GIEGLSKPTVLNVGKNKLRSMD----DVTSVVSLRALILN  115 (406)
Q Consensus        42 ~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~i~~l~----~l~~l~~L~~L~Ls  115 (406)
                      +|++|++++|.+..+..+..+++|++|+|++|.++. +| .+..+++|++|+|++|.|+.++    .+..+++|++|+|+
T Consensus       332 ~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~  411 (562)
T 3a79_B          332 NIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS  411 (562)
T ss_dssp             CCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECT
T ss_pred             cceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECC
Confidence            345555555554443333444455555555555443 22 3444555555555555554432    13444555555555


Q ss_pred             CCccCC-ccc--cCCCCCCcEeeCC---------CCC-CCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCcC
Q 015448          116 DNEIVS-ICK--LDQMKELNTLGMD---------SYF-FNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARP  177 (406)
Q Consensus       116 ~N~i~~-l~~--l~~L~~L~~L~Ls---------~~l-~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~~  177 (406)
                      +|.++. ++.  +..+++|++|+|+         ..+ ++|+.|+|++|.|+.++..    +..+++|+.|+...
T Consensus       412 ~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~----~~~l~~L~~L~L~~  482 (562)
T 3a79_B          412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKD----VTHLQALQELNVAS  482 (562)
T ss_dssp             TSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTT----TTSSCCCSEEECCS
T ss_pred             CCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChh----hcCCCCCCEEECCC
Confidence            555444 332  4444455555544         123 5899999999999988753    23789999777543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.48  E-value=2.4e-13  Score=148.85  Aligned_cols=104  Identities=25%  Similarity=0.388  Sum_probs=52.9

Q ss_pred             CCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEc
Q 015448           19 NSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNV   92 (406)
Q Consensus        19 ~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~L   92 (406)
                      ++|+.|+|++|.+..+.  .+..+++|++|+|++|.|+.++  .|..+++|++|+|++|.++.++  .+..+++|+.|+|
T Consensus       266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  345 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL  345 (844)
T ss_dssp             SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred             CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence            44555555555555432  4445555555555555555442  2455555555555555555442  3455555555555


Q ss_pred             CCCCCCCCc--CCCCCCCCCEEEccCCccCCc
Q 015448           93 GKNKLRSMD--DVTSVVSLRALILNDNEIVSI  122 (406)
Q Consensus        93 s~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l  122 (406)
                      ++|.|..++  .+..+++|++|+|++|.++.+
T Consensus       346 ~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i  377 (844)
T 3j0a_A          346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI  377 (844)
T ss_dssp             CSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC
T ss_pred             CCCCCCccChhhhcCCCCCCEEECCCCCCCcc
Confidence            555555443  244455555555555554443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.46  E-value=7.8e-14  Score=146.56  Aligned_cols=106  Identities=26%  Similarity=0.314  Sum_probs=99.2

Q ss_pred             CCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCC-CCCCCCCcEEEecCCCCCCCCCCCCCCCCcEEEcCCCCC
Q 015448           19 NSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEG-LKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKL   97 (406)
Q Consensus        19 ~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~-l~~L~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~i   97 (406)
                      ..|+.|+|++|.|+.+|.+..+++|++|+|++|.|+.+|. |..+++|++|+|++|.|+.+|.+..+++|++|+|++|.|
T Consensus       441 ~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l  520 (567)
T 1dce_A          441 ADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRL  520 (567)
T ss_dssp             TTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCC
T ss_pred             cCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCC
Confidence            3589999999999999989999999999999999999974 899999999999999999999999999999999999999


Q ss_pred             CCC--c-CCCCCCCCCEEEccCCccCCccc
Q 015448           98 RSM--D-DVTSVVSLRALILNDNEIVSICK  124 (406)
Q Consensus        98 ~~l--~-~l~~l~~L~~L~Ls~N~i~~l~~  124 (406)
                      +.+  | .+..+++|+.|+|++|.|+.++.
T Consensus       521 ~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          521 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             CCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            997  5 58899999999999999998765

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.46  E-value=1.2e-13  Score=135.98  Aligned_cols=171  Identities=16%  Similarity=0.183  Sum_probs=112.6

Q ss_pred             ccccccCCCCCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCC-CC--CCCCCCCCcE-EEecCCCCCCC
Q 015448            5 STQQILKDNKTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTS-LE--GLKHCVNLKW-LSLVQNKLQSL   78 (406)
Q Consensus         5 s~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~-l~--~l~~L~~L~~-L~Ls~N~l~~l   78 (406)
                      +.+.++.+. ...+.++++|+|++|.|+.++  .|..+++|++|+|++|.+.. ++  .|.++++|.. +.++.|+|+.+
T Consensus        17 ~~~~Lt~iP-~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l   95 (350)
T 4ay9_X           17 QESKVTEIP-SDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI   95 (350)
T ss_dssp             ESTTCCSCC-TTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE
T ss_pred             cCCCCCccC-cCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc
Confidence            334444442 233678899999999998886  68889999999999998754 44  3677777664 55666788877


Q ss_pred             C--CCCCCCCCcEEEcCCCCCCCCcCC---------------------------CCC-CCCCEEEccCCccCCccc-cCC
Q 015448           79 K--GIEGLSKPTVLNVGKNKLRSMDDV---------------------------TSV-VSLRALILNDNEIVSICK-LDQ  127 (406)
Q Consensus        79 ~--~l~~l~~L~~L~Ls~N~i~~l~~l---------------------------~~l-~~L~~L~Ls~N~i~~l~~-l~~  127 (406)
                      +  .|..+++|++|++++|.|..++..                           ..+ ..|+.|+|++|.|+.++. ...
T Consensus        96 ~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~  175 (350)
T 4ay9_X           96 NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN  175 (350)
T ss_dssp             CTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSST
T ss_pred             CchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcc
Confidence            6  377788888888888877665321                           111 235566666666666653 334


Q ss_pred             CCCCcEeeCC-------------CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCcCCC
Q 015448          128 MKELNTLGMD-------------SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPID  179 (406)
Q Consensus       128 L~~L~~L~Ls-------------~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~~~~  179 (406)
                      ..+|..|++.             ..+++|+.|+|++|.|+.++..   .+..+++|+.++...+.
T Consensus       176 ~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~---~~~~L~~L~~l~~~~l~  237 (350)
T 4ay9_X          176 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY---GLENLKKLRARSTYNLK  237 (350)
T ss_dssp             TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS---SCTTCCEEECTTCTTCC
T ss_pred             ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh---hhccchHhhhccCCCcC
Confidence            4556666654             4567788888888888877652   24556666655554433

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.45  E-value=4.4e-13  Score=120.81  Aligned_cols=122  Identities=22%  Similarity=0.316  Sum_probs=104.7

Q ss_pred             CccccccccCCCCCCCCCCccEEEeeCCCCCCCC---CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCC
Q 015448            2 TRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVS---CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQ   76 (406)
Q Consensus         2 ~~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~---~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~   76 (406)
                      ++++.+.+..+.. ..+.+|++|+|++|.|+.++   .+..+++|++|+|++|.|+.+.  .|..+++|++|+|++|.|+
T Consensus        13 l~~s~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~   91 (192)
T 1w8a_A           13 VDCTGRGLKEIPR-DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK   91 (192)
T ss_dssp             EECTTSCCSSCCS-CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCC
T ss_pred             EEcCCCCcCcCcc-CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCC
Confidence            3566777765543 33569999999999999986   3889999999999999999984  4899999999999999999


Q ss_pred             CCC--CCCCCCCCcEEEcCCCCCCCC-c-CCCCCCCCCEEEccCCccCCccc
Q 015448           77 SLK--GIEGLSKPTVLNVGKNKLRSM-D-DVTSVVSLRALILNDNEIVSICK  124 (406)
Q Consensus        77 ~l~--~l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~Ls~N~i~~l~~  124 (406)
                      .++  .+..+++|++|+|++|.|+.+ + .+..+++|++|+|++|.++....
T Consensus        92 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            887  388999999999999999986 3 58889999999999999986543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.42  E-value=5.2e-14  Score=124.85  Aligned_cols=120  Identities=15%  Similarity=0.179  Sum_probs=96.7

Q ss_pred             CccccccccCCCCCCCCC-CccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCCC
Q 015448            2 TRLSTQQILKDNKTCDPN-SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSL   78 (406)
Q Consensus         2 ~~Ls~n~i~~~~~~~~~~-~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~l   78 (406)
                      ++|+.|++..+.....+. +|+.|+|++|.|+.++.+..+++|++|+|++|.|+.++.  +..+++|++|+|++|.|..+
T Consensus        24 L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~  103 (176)
T 1a9n_A           24 LDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL  103 (176)
T ss_dssp             EECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCG
T ss_pred             EEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcc
Confidence            356777887775555544 999999999999999889999999999999999999874  58899999999999999887


Q ss_pred             CC---CCCCCCCcEEEcCCCCCCCCcC-----CCCCCCCCEEEccCCccCC
Q 015448           79 KG---IEGLSKPTVLNVGKNKLRSMDD-----VTSVVSLRALILNDNEIVS  121 (406)
Q Consensus        79 ~~---l~~l~~L~~L~Ls~N~i~~l~~-----l~~l~~L~~L~Ls~N~i~~  121 (406)
                      |.   +..+++|++|++++|.++.++.     +..+++|++|++++|.+..
T Consensus       104 ~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          104 GDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             GGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             hhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            74   6677788888888888777664     5566777777777766543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.41  E-value=5e-14  Score=139.99  Aligned_cols=120  Identities=18%  Similarity=0.249  Sum_probs=71.0

Q ss_pred             CCCccEEEeeCCCCCCCC------CCCCCCCCcEEEccCCCCCCCC-----C-------CCCCCCCcEEEecCCCCCC--
Q 015448           18 PNSIKSLSLTHKALSDVS------CLTDFNNLERLDLSSNNLTSLE-----G-------LKHCVNLKWLSLVQNKLQS--   77 (406)
Q Consensus        18 ~~~L~~L~Ls~n~l~~i~------~l~~l~~L~~L~Ls~N~l~~l~-----~-------l~~L~~L~~L~Ls~N~l~~--   77 (406)
                      +++|++|+|++|.|+...      .+..+++|++|+|++|.+..+.     .       |..+++|++|+|++|.|+.  
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            566777777777776531      4667777777777777665442     1       2567777777777777765  


Q ss_pred             ---CC-CCCCCCCCcEEEcCCCCCCCC-----c-CCCCC---------CCCCEEEccCCccCC--cc----ccCCCCCCc
Q 015448           78 ---LK-GIEGLSKPTVLNVGKNKLRSM-----D-DVTSV---------VSLRALILNDNEIVS--IC----KLDQMKELN  132 (406)
Q Consensus        78 ---l~-~l~~l~~L~~L~Ls~N~i~~l-----~-~l~~l---------~~L~~L~Ls~N~i~~--l~----~l~~L~~L~  132 (406)
                         ++ .+..+++|++|+|++|.|+..     + .+..+         ++|++|+|++|.|+.  ++    .+..+++|+
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  190 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  190 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence               33 355666677777776666432     1 12222         556666666665542  22    133445555


Q ss_pred             EeeCC
Q 015448          133 TLGMD  137 (406)
Q Consensus       133 ~L~Ls  137 (406)
                      +|+|+
T Consensus       191 ~L~L~  195 (386)
T 2ca6_A          191 TVKMV  195 (386)
T ss_dssp             EEECC
T ss_pred             EEECc
Confidence            55554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.39  E-value=6.9e-14  Score=151.05  Aligned_cols=107  Identities=23%  Similarity=0.319  Sum_probs=74.3

Q ss_pred             CCCCCccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCCC-CCCCCCCcEEEecCCCCCCCC-CCCCCCCCcEEEc
Q 015448           16 CDPNSIKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLEG-LKHCVNLKWLSLVQNKLQSLK-GIEGLSKPTVLNV   92 (406)
Q Consensus        16 ~~~~~L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~~-l~~L~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L   92 (406)
                      ..+..|+.|+|++|.|..++ .+..+++|++|+|++|.|+.+|. |..|++|++|+|++|.|+.|| .|..|++|++|+|
T Consensus       221 ~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L  300 (727)
T 4b8c_D          221 YDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYF  300 (727)
T ss_dssp             -CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEEC
T ss_pred             ccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEEC
Confidence            34566777777777777665 44567777777777777776653 667777777777777777776 5667777777777


Q ss_pred             CCCCCCCCc-CCCCCCCCCEEEccCCccCCc
Q 015448           93 GKNKLRSMD-DVTSVVSLRALILNDNEIVSI  122 (406)
Q Consensus        93 s~N~i~~l~-~l~~l~~L~~L~Ls~N~i~~l  122 (406)
                      ++|.|+.+| .|..+++|++|+|++|.|+..
T Consensus       301 ~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~  331 (727)
T 4b8c_D          301 FDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQ  331 (727)
T ss_dssp             CSSCCCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred             CCCCCCccChhhhcCCCccEEeCCCCccCCC
Confidence            777777766 466777777777777777653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.39  E-value=2.5e-14  Score=138.76  Aligned_cols=135  Identities=19%  Similarity=0.253  Sum_probs=68.0

Q ss_pred             CCCccEEEeeCCCCCC--CC-CCCCCCCCcEEEccCCCCCCC--CCCCCCCCCcEEEecCC-CCCC--CC-CCCCCCCCc
Q 015448           18 PNSIKSLSLTHKALSD--VS-CLTDFNNLERLDLSSNNLTSL--EGLKHCVNLKWLSLVQN-KLQS--LK-GIEGLSKPT   88 (406)
Q Consensus        18 ~~~L~~L~Ls~n~l~~--i~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~L~~L~~L~Ls~N-~l~~--l~-~l~~l~~L~   88 (406)
                      +++|++|+|++|.++.  ++ .+..+++|++|+|++|.++..  ..+..+++|++|+|++| .++.  ++ .+..+++|+
T Consensus        92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~  171 (336)
T 2ast_B           92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  171 (336)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence            4555556665555543  22 345555566666665555432  12444555666666655 4442  33 244555566


Q ss_pred             EEEcCCC-CCCC--Cc-CCCCCC-CCCEEEccCCc--cC--Cccc-cCCCCCCcEeeCC-------------CCCCCCCE
Q 015448           89 VLNVGKN-KLRS--MD-DVTSVV-SLRALILNDNE--IV--SICK-LDQMKELNTLGMD-------------SYFFNLNN  145 (406)
Q Consensus        89 ~L~Ls~N-~i~~--l~-~l~~l~-~L~~L~Ls~N~--i~--~l~~-l~~L~~L~~L~Ls-------------~~l~~L~~  145 (406)
                      +|+|++| .++.  ++ .+..++ +|++|+|++|.  ++  .++. +..+++|++|+|+             ..+++|++
T Consensus       172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~  251 (336)
T 2ast_B          172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH  251 (336)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCE
Confidence            6666655 5543  22 234455 56666666553  22  1221 3445555555554             33455555


Q ss_pred             EEcCCCC
Q 015448          146 LNLQGNP  152 (406)
Q Consensus       146 L~Ls~N~  152 (406)
                      |+|++|.
T Consensus       252 L~l~~~~  258 (336)
T 2ast_B          252 LSLSRCY  258 (336)
T ss_dssp             EECTTCT
T ss_pred             eeCCCCC
Confidence            5555553

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.36  E-value=6.5e-12  Score=111.65  Aligned_cols=101  Identities=24%  Similarity=0.286  Sum_probs=58.2

Q ss_pred             cEEEccCCCCCCCCC-CCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCCCCCCCCcC--CCCCCCCCEEEccCCc
Q 015448           44 ERLDLSSNNLTSLEG-LKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDNE  118 (406)
Q Consensus        44 ~~L~Ls~N~l~~l~~-l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~  118 (406)
                      +.|++++|.++.+|. +  .++|++|+|++|.|+.++  .|..+++|++|+|++|.|+.++.  +..+++|++|+|++|.
T Consensus        15 ~~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            445555555555543 2  255556666666665553  25556666666666666666552  4556666666666666


Q ss_pred             cCCccc--cCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchh
Q 015448          119 IVSICK--LDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDK  158 (406)
Q Consensus       119 i~~l~~--l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~  158 (406)
                      |+.++.  +.            .+++|++|+|++|++.+.+.
T Consensus        93 l~~l~~~~~~------------~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           93 LKSIPRGAFD------------NLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCCTTTTT------------TCTTCSEEECCSSCBCTTBG
T ss_pred             cceeCHHHhc------------cccCCCEEEeCCCCcccccc
Confidence            665543  22            34466777777777766543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.36  E-value=2e-12  Score=127.15  Aligned_cols=135  Identities=15%  Similarity=0.161  Sum_probs=107.7

Q ss_pred             cEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCC-CCC--CCCCCCCCcE-EEcCC
Q 015448           22 KSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQ-SLK--GIEGLSKPTV-LNVGK   94 (406)
Q Consensus        22 ~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~-~l~--~l~~l~~L~~-L~Ls~   94 (406)
                      ++++.+++.++.+| .+  .++|++|+|++|.|+.++.  |.++++|++|+|++|.+. .++  .|.++++|.. +.++.
T Consensus        12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            67899999999998 44  4689999999999999974  899999999999999985 466  3788888765 66778


Q ss_pred             CCCCCCc--CCCCCCCCCEEEccCCccCCccccC--CCCCCcEeeCC-------------CC-CCCCCEEEcCCCCCCCc
Q 015448           95 NKLRSMD--DVTSVVSLRALILNDNEIVSICKLD--QMKELNTLGMD-------------SY-FFNLNNLNLQGNPVAEY  156 (406)
Q Consensus        95 N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~l~--~L~~L~~L~Ls-------------~~-l~~L~~L~Ls~N~i~~~  156 (406)
                      |.|+.++  .+..+++|++|++++|.|+.++...  ....+..|++.             .. ...|+.|+|++|.|+.+
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i  169 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI  169 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred             CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence            9999985  4789999999999999999887533  33445556553             12 23577888999988877


Q ss_pred             hh
Q 015448          157 DK  158 (406)
Q Consensus       157 ~~  158 (406)
                      +.
T Consensus       170 ~~  171 (350)
T 4ay9_X          170 HN  171 (350)
T ss_dssp             CT
T ss_pred             Ch
Confidence            64

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.36  E-value=6.4e-12  Score=111.09  Aligned_cols=102  Identities=25%  Similarity=0.321  Sum_probs=62.9

Q ss_pred             CcEEEccCCCCCCCCC-CCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCCCCCCCCcC--CCCCCCCCEEEccCC
Q 015448           43 LERLDLSSNNLTSLEG-LKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDN  117 (406)
Q Consensus        43 L~~L~Ls~N~l~~l~~-l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N  117 (406)
                      .+.|++++|.|+.+|. +  ..+|++|+|++|.|+.++  .|..+++|++|+|++|.|+.++.  +..+++|++|+|++|
T Consensus        11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            3555666666665553 2  255666666666666654  26666666666666666666552  456667777777777


Q ss_pred             ccCCccc--cCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchh
Q 015448          118 EIVSICK--LDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDK  158 (406)
Q Consensus       118 ~i~~l~~--l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~  158 (406)
                      .|+.++.  +.            .+++|+.|+|++|++.+.+.
T Consensus        89 ~l~~~~~~~~~------------~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           89 QLKSIPRGAFD------------NLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CCCCCCTTTTT------------TCTTCCEEECCSSCBCTTBG
T ss_pred             ccCEeCHHHhc------------CCCCCCEEEeCCCCCCCCch
Confidence            7766653  22            34467777777777776653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.35  E-value=7.7e-13  Score=142.86  Aligned_cols=110  Identities=26%  Similarity=0.324  Sum_probs=90.8

Q ss_pred             CCCCCCCCcEEEccCCCCCCCCC-CCCCCCCcEEEecCCCCCCCC-CCCCCCCCcEEEcCCCCCCCCc-CCCCCCCCCEE
Q 015448           36 CLTDFNNLERLDLSSNNLTSLEG-LKHCVNLKWLSLVQNKLQSLK-GIEGLSKPTVLNVGKNKLRSMD-DVTSVVSLRAL  112 (406)
Q Consensus        36 ~l~~l~~L~~L~Ls~N~l~~l~~-l~~L~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L  112 (406)
                      .+..+.+|+.|+|++|.|..++. +..+++|++|+|++|.|+.+| .|..|++|++|+|++|.|+.+| .+..+++|++|
T Consensus       219 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L  298 (727)
T 4b8c_D          219 SKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF  298 (727)
T ss_dssp             ---CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred             hhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence            56788899999999999988863 668899999999999999888 5888999999999999999887 58888999999


Q ss_pred             EccCCccCCccc-cCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCch
Q 015448          113 ILNDNEIVSICK-LDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYD  157 (406)
Q Consensus       113 ~Ls~N~i~~l~~-l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~  157 (406)
                      +|++|.|+.++. +.            .+++|+.|+|++|+|....
T Consensus       299 ~L~~N~l~~lp~~~~------------~l~~L~~L~L~~N~l~~~~  332 (727)
T 4b8c_D          299 YFFDNMVTTLPWEFG------------NLCNLQFLGVEGNPLEKQF  332 (727)
T ss_dssp             ECCSSCCCCCCSSTT------------SCTTCCCEECTTSCCCSHH
T ss_pred             ECCCCCCCccChhhh------------cCCCccEEeCCCCccCCCC
Confidence            999999988764 33            4568888999999998653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.34  E-value=9.3e-12  Score=110.63  Aligned_cols=101  Identities=28%  Similarity=0.380  Sum_probs=91.0

Q ss_pred             ccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCCCCC--CCCCCCCcEEEcCCC
Q 015448           21 IKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSLKG--IEGLSKPTVLNVGKN   95 (406)
Q Consensus        21 L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N   95 (406)
                      -+.|++++|.++.+| .+  .++|++|+|++|.|+.+++  |..+++|++|+|++|.|+.+|.  |..+++|++|+|++|
T Consensus        14 ~~~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SSEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcEEEeCCCCCCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            478999999999998 34  3899999999999999853  8999999999999999999983  689999999999999


Q ss_pred             CCCCCcC--CCCCCCCCEEEccCCccCCcc
Q 015448           96 KLRSMDD--VTSVVSLRALILNDNEIVSIC  123 (406)
Q Consensus        96 ~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~  123 (406)
                      .|+.++.  +..+++|++|+|++|.+...+
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence            9999873  888999999999999998665

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.32  E-value=3.5e-13  Score=130.66  Aligned_cols=158  Identities=16%  Similarity=0.134  Sum_probs=119.0

Q ss_pred             CCccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCC--CC-CCCCCCCCcEEEecCCCCCC-CC-CCCCCCCCcEEEc
Q 015448           19 NSIKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTS--LE-GLKHCVNLKWLSLVQNKLQS-LK-GIEGLSKPTVLNV   92 (406)
Q Consensus        19 ~~L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~--l~-~l~~L~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~L   92 (406)
                      ..++.|++++|.+.... .+..+++|++|+|++|.++.  ++ .+..+++|++|+|++|.++. ++ .+..+++|++|+|
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            67888888888887764 56678899999999998875  33 37788999999999998873 33 5777899999999


Q ss_pred             CCC-CCCC--CcC-CCCCCCCCEEEccCC-ccCC--ccc-cCCCC-CCcEeeCC---------------CCCCCCCEEEc
Q 015448           93 GKN-KLRS--MDD-VTSVVSLRALILNDN-EIVS--ICK-LDQMK-ELNTLGMD---------------SYFFNLNNLNL  148 (406)
Q Consensus        93 s~N-~i~~--l~~-l~~l~~L~~L~Ls~N-~i~~--l~~-l~~L~-~L~~L~Ls---------------~~l~~L~~L~L  148 (406)
                      ++| .++.  ++. +..+++|++|+|++| .++.  ++. +..++ +|++|+|+               ..+++|+.|+|
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l  229 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL  229 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence            999 6774  443 667889999999999 8875  333 66777 88888886               35778888999


Q ss_pred             CCCC-CCCchhHHHHHHhcCCCcccccCcCCC
Q 015448          149 QGNP-VAEYDKLAKKVKTLLPNLCIFNARPID  179 (406)
Q Consensus       149 s~N~-i~~~~~~~~~~~~~lp~L~~Ld~~~~~  179 (406)
                      ++|. ++.....   .+..+++|+.|+...+.
T Consensus       230 ~~~~~l~~~~~~---~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          230 SDSVMLKNDCFQ---EFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             TTCTTCCGGGGG---GGGGCTTCCEEECTTCT
T ss_pred             CCCCcCCHHHHH---HHhCCCCCCEeeCCCCC
Confidence            8888 5433221   24667888888776654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.31  E-value=4e-13  Score=132.64  Aligned_cols=81  Identities=27%  Similarity=0.333  Sum_probs=36.7

Q ss_pred             CCccEEEeeCCCCCCCC------CCCCCC-CCcEEEccCCCCCCCC--CCCC-----CCCCcEEEecCCCCCCCC-C---
Q 015448           19 NSIKSLSLTHKALSDVS------CLTDFN-NLERLDLSSNNLTSLE--GLKH-----CVNLKWLSLVQNKLQSLK-G---   80 (406)
Q Consensus        19 ~~L~~L~Ls~n~l~~i~------~l~~l~-~L~~L~Ls~N~l~~l~--~l~~-----L~~L~~L~Ls~N~l~~l~-~---   80 (406)
                      .+|++|+|++|.|+.++      .+..++ +|++|+|++|.|+...  .+..     +++|++|+|++|.|+..+ .   
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            34555555555555442      233444 5555555555554432  1211     145555555555554332 1   


Q ss_pred             --CCCC-CCCcEEEcCCCCCCC
Q 015448           81 --IEGL-SKPTVLNVGKNKLRS   99 (406)
Q Consensus        81 --l~~l-~~L~~L~Ls~N~i~~   99 (406)
                        +..+ ++|++|+|++|.|+.
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~  123 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSS  123 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGG
T ss_pred             HHHHhCCCCccEEECcCCcCCc
Confidence              2222 445555555555444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.29  E-value=2.1e-11  Score=107.72  Aligned_cols=102  Identities=26%  Similarity=0.344  Sum_probs=91.4

Q ss_pred             CccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCCCCC--CCCCCCCcEEEcCC
Q 015448           20 SIKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSLKG--IEGLSKPTVLNVGK   94 (406)
Q Consensus        20 ~L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~   94 (406)
                      ..+.|++++|.|+.+| .+  .++|++|+|++|.|+.+++  |..+++|++|+|++|.|+.++.  |..+++|++|+|++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            3578999999999998 34  4899999999999999853  8999999999999999999983  78999999999999


Q ss_pred             CCCCCCcC--CCCCCCCCEEEccCCccCCcc
Q 015448           95 NKLRSMDD--VTSVVSLRALILNDNEIVSIC  123 (406)
Q Consensus        95 N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~  123 (406)
                      |.|+.++.  +..+++|++|+|++|.++..+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            99999873  789999999999999988654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.29  E-value=6.9e-15  Score=133.06  Aligned_cols=134  Identities=26%  Similarity=0.365  Sum_probs=109.2

Q ss_pred             CCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCC-CCCCCCCcEEEecCCCCCCCCCCCCCCCCcEEEcCC
Q 015448           16 CDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEG-LKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGK   94 (406)
Q Consensus        16 ~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~-l~~L~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~   94 (406)
                      ..+++|++|+|++|.|+.++.+..+++|++|+|++|.|+.++. +..+++|++|+|++|.|+.+|.+..+++|++|+|++
T Consensus        45 ~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~  124 (198)
T 1ds9_A           45 STLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSN  124 (198)
T ss_dssp             HHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEESE
T ss_pred             hcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEECCC
Confidence            4478999999999999999988899999999999999999876 455689999999999999998888899999999999


Q ss_pred             CCCCCCc---CCCCCCCCCEEEccCCccCCccccC----CCC--CCcEeeCCCCCCCCCEEEcCCCCCCCch
Q 015448           95 NKLRSMD---DVTSVVSLRALILNDNEIVSICKLD----QMK--ELNTLGMDSYFFNLNNLNLQGNPVAEYD  157 (406)
Q Consensus        95 N~i~~l~---~l~~l~~L~~L~Ls~N~i~~l~~l~----~L~--~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~  157 (406)
                      |.|+.++   .+..+++|++|++++|.++....-.    ...  .+      ..+++|+.|+  +|+++...
T Consensus       125 N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~------~~l~~L~~Ld--~~~i~~~e  188 (198)
T 1ds9_A          125 NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV------KRLPNLKKLD--GMPVDVDE  188 (198)
T ss_dssp             EECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH------HHCSSCSEEC--CGGGTTTT
T ss_pred             CcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH------HhCCCcEEEC--CcccCHHH
Confidence            9999865   4789999999999999986652110    000  00      2456777776  77776654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.28  E-value=2.6e-11  Score=118.47  Aligned_cols=102  Identities=27%  Similarity=0.291  Sum_probs=57.4

Q ss_pred             EEccCC-CCCCCCCCCCCCCCcEEEecC-CCCCCCC--CCCCCCCCcEEEcCCCCCCCCc--CCCCCCCCCEEEccCCcc
Q 015448           46 LDLSSN-NLTSLEGLKHCVNLKWLSLVQ-NKLQSLK--GIEGLSKPTVLNVGKNKLRSMD--DVTSVVSLRALILNDNEI  119 (406)
Q Consensus        46 L~Ls~N-~l~~l~~l~~L~~L~~L~Ls~-N~l~~l~--~l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i  119 (406)
                      ++++++ .|+.+|.|..+.+|++|+|++ |.|+.++  .|..|++|+.|+|++|.|+.++  .|..+++|++|+|++|.|
T Consensus        13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l   92 (347)
T 2ifg_A           13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL   92 (347)
T ss_dssp             EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred             EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence            455554 555555555555566666654 6666555  2556666666666666666543  245666666666666666


Q ss_pred             CCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchh
Q 015448          120 VSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDK  158 (406)
Q Consensus       120 ~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~  158 (406)
                      +.++.-. +.         .+ .|+.|+|.+|++.+.+.
T Consensus        93 ~~~~~~~-~~---------~~-~L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           93 ESLSWKT-VQ---------GL-SLQELVLSGNPLHCSCA  120 (347)
T ss_dssp             SCCCSTT-TC---------SC-CCCEEECCSSCCCCCGG
T ss_pred             ceeCHHH-cc---------cC-CceEEEeeCCCccCCCc
Confidence            6555310 00         11 26667777777766554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.28  E-value=5.3e-12  Score=122.90  Aligned_cols=151  Identities=18%  Similarity=0.223  Sum_probs=93.7

Q ss_pred             CCCccEEEeeCCCCC--------------------CCC--CCCC--------CCCCcEEEccCCCCCCCC--CCCCCCCC
Q 015448           18 PNSIKSLSLTHKALS--------------------DVS--CLTD--------FNNLERLDLSSNNLTSLE--GLKHCVNL   65 (406)
Q Consensus        18 ~~~L~~L~Ls~n~l~--------------------~i~--~l~~--------l~~L~~L~Ls~N~l~~l~--~l~~L~~L   65 (406)
                      +++|+.|+|++|.|.                    .++  .|..        |++|+.|+|.+ .++.++  .|.+|++|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            567778888877777                    222  4556        78888888877 777765  37788888


Q ss_pred             cEEEecCCCCCCCC--CCCC------------------------------------------------------------
Q 015448           66 KWLSLVQNKLQSLK--GIEG------------------------------------------------------------   83 (406)
Q Consensus        66 ~~L~Ls~N~l~~l~--~l~~------------------------------------------------------------   83 (406)
                      +.|+|++|.+..|+  .|..                                                            
T Consensus       127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~  206 (329)
T 3sb4_A          127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF  206 (329)
T ss_dssp             CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred             ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence            88888877765443  1222                                                            


Q ss_pred             ------------------CCCCcEEEcCCCCCCCCc--CCCCCCCCCEEEccCCccCCccc--cCCCCCCc-EeeCC---
Q 015448           84 ------------------LSKPTVLNVGKNKLRSMD--DVTSVVSLRALILNDNEIVSICK--LDQMKELN-TLGMD---  137 (406)
Q Consensus        84 ------------------l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~-~L~Ls---  137 (406)
                                        +++|+.|+|++|.++.++  .|..+.+|+.|+|.+| ++.++.  |..|.+|+ .|.|+   
T Consensus       207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~l  285 (329)
T 3sb4_A          207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPASV  285 (329)
T ss_dssp             EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECTTC
T ss_pred             EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcccc
Confidence                              456666666666666655  3556666666666665 555543  55666666 66554   


Q ss_pred             --------CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccc
Q 015448          138 --------SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIF  173 (406)
Q Consensus       138 --------~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~L  173 (406)
                              ..|++|+.|+|++|.+..++...   +..|++|+.+
T Consensus       286 ~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~a---F~~~~~L~~l  326 (329)
T 3sb4_A          286 TAIEFGAFMGCDNLRYVLATGDKITTLGDEL---FGNGVPSKLI  326 (329)
T ss_dssp             CEECTTTTTTCTTEEEEEECSSCCCEECTTT---TCTTCCCCEE
T ss_pred             eEEchhhhhCCccCCEEEeCCCccCccchhh---hcCCcchhhh
Confidence                    45566666666666666655432   4555555544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.26  E-value=2.1e-12  Score=127.44  Aligned_cols=176  Identities=22%  Similarity=0.171  Sum_probs=130.2

Q ss_pred             CccccccccCCCC------CCCCC-CccEEEeeCCCCCCCC--CCCC-----CCCCcEEEccCCCCCCCCC------CCC
Q 015448            2 TRLSTQQILKDNK------TCDPN-SIKSLSLTHKALSDVS--CLTD-----FNNLERLDLSSNNLTSLEG------LKH   61 (406)
Q Consensus         2 ~~Ls~n~i~~~~~------~~~~~-~L~~L~Ls~n~l~~i~--~l~~-----l~~L~~L~Ls~N~l~~l~~------l~~   61 (406)
                      ++|+.|.+.....      +..++ +|++|+|++|.|+...  .+..     +++|++|+|++|.|+....      +..
T Consensus        27 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~  106 (362)
T 3goz_A           27 LDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAA  106 (362)
T ss_dssp             EECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHT
T ss_pred             EEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHh
Confidence            3566777766543      23455 8999999999998864  3333     2899999999999987642      445


Q ss_pred             C-CCCcEEEecCCCCCCCCC------CCC-CCCCcEEEcCCCCCCCC-----c-CCCCCC-CCCEEEccCCccCCccc--
Q 015448           62 C-VNLKWLSLVQNKLQSLKG------IEG-LSKPTVLNVGKNKLRSM-----D-DVTSVV-SLRALILNDNEIVSICK--  124 (406)
Q Consensus        62 L-~~L~~L~Ls~N~l~~l~~------l~~-l~~L~~L~Ls~N~i~~l-----~-~l~~l~-~L~~L~Ls~N~i~~l~~--  124 (406)
                      + ++|++|+|++|.|+..+.      +.. .++|++|+|++|.|+..     + .+..++ +|++|+|++|.|+....  
T Consensus       107 ~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~  186 (362)
T 3goz_A          107 IPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAE  186 (362)
T ss_dssp             SCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHH
T ss_pred             CCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHH
Confidence            5 899999999999987662      444 36999999999999853     2 244555 99999999999987652  


Q ss_pred             ----cCCC-CCCcEeeCC-----------------CCCCCCCEEEcCCCCCCCchhHH-HHHHhcCCCcccccCcC
Q 015448          125 ----LDQM-KELNTLGMD-----------------SYFFNLNNLNLQGNPVAEYDKLA-KKVKTLLPNLCIFNARP  177 (406)
Q Consensus       125 ----l~~L-~~L~~L~Ls-----------------~~l~~L~~L~Ls~N~i~~~~~~~-~~~~~~lp~L~~Ld~~~  177 (406)
                          +..+ ++|++|+|+                 ...++|+.|+|++|.|...+... ..++..+++|+.|+...
T Consensus       187 l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~  262 (362)
T 3goz_A          187 LAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDY  262 (362)
T ss_dssp             HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEH
T ss_pred             HHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEecc
Confidence                4445 589999998                 12468999999999998875422 23446778888776543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.15  E-value=3.8e-12  Score=128.56  Aligned_cols=115  Identities=16%  Similarity=0.073  Sum_probs=56.2

Q ss_pred             CCCCcEEEecCCCCCC-----CC-CCCCCCCCcEEEcCCCCCCCC-----c-CC-CCCCCCCEEEccCCccCCcc-----
Q 015448           62 CVNLKWLSLVQNKLQS-----LK-GIEGLSKPTVLNVGKNKLRSM-----D-DV-TSVVSLRALILNDNEIVSIC-----  123 (406)
Q Consensus        62 L~~L~~L~Ls~N~l~~-----l~-~l~~l~~L~~L~Ls~N~i~~l-----~-~l-~~l~~L~~L~Ls~N~i~~l~-----  123 (406)
                      +++|++|+|++|.|+.     ++ .+..+++|++|+|++|.|+..     . .+ ...++|++|+|++|.++...     
T Consensus       255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  334 (461)
T 1z7x_W          255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS  334 (461)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence            4555555555555543     23 233455555555555555431     1 01 12245666666666555431     


Q ss_pred             -ccCCCCCCcEeeCC-----------------CCCCCCCEEEcCCCCCCCchhH-HHHHHhcCCCcccccCc
Q 015448          124 -KLDQMKELNTLGMD-----------------SYFFNLNNLNLQGNPVAEYDKL-AKKVKTLLPNLCIFNAR  176 (406)
Q Consensus       124 -~l~~L~~L~~L~Ls-----------------~~l~~L~~L~Ls~N~i~~~~~~-~~~~~~~lp~L~~Ld~~  176 (406)
                       .+..+++|++|+|+                 ..+++|++|+|++|.++..... ....+..+++|+.|+..
T Consensus       335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~  406 (461)
T 1z7x_W          335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLS  406 (461)
T ss_dssp             HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECC
T ss_pred             HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECC
Confidence             13445666666665                 1145666677776666542110 01123456666655543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.14  E-value=1.2e-11  Score=124.86  Aligned_cols=162  Identities=19%  Similarity=0.173  Sum_probs=116.0

Q ss_pred             CCCCccEEEeeCCCCCCC-----C-CCCCCCCCcEEEccCCCCCCCC------CCCCCC-CCcEEEecCCCCCC-----C
Q 015448           17 DPNSIKSLSLTHKALSDV-----S-CLTDFNNLERLDLSSNNLTSLE------GLKHCV-NLKWLSLVQNKLQS-----L   78 (406)
Q Consensus        17 ~~~~L~~L~Ls~n~l~~i-----~-~l~~l~~L~~L~Ls~N~l~~l~------~l~~L~-~L~~L~Ls~N~l~~-----l   78 (406)
                      .+++|++|+|++|.++..     + .+..+++|++|+|++|.|+...      .+.... +|++|+|++|.|+.     +
T Consensus        26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l  105 (461)
T 1z7x_W           26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL  105 (461)
T ss_dssp             HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence            467899999999998853     2 5677889999999999887531      222222 79999999999884     3


Q ss_pred             C-CCCCCCCCcEEEcCCCCCCCC--c----C-CCCCCCCCEEEccCCccCCcc------ccCCCCCCcEeeCC-------
Q 015448           79 K-GIEGLSKPTVLNVGKNKLRSM--D----D-VTSVVSLRALILNDNEIVSIC------KLDQMKELNTLGMD-------  137 (406)
Q Consensus        79 ~-~l~~l~~L~~L~Ls~N~i~~l--~----~-l~~l~~L~~L~Ls~N~i~~l~------~l~~L~~L~~L~Ls-------  137 (406)
                      + .+..+++|++|+|++|.|+..  .    . ...+++|++|+|++|.++...      .+..+++|++|+|+       
T Consensus       106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  185 (461)
T 1z7x_W          106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA  185 (461)
T ss_dssp             HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence            4 478889999999999988652  1    1 234567999999999887632      25667888888888       


Q ss_pred             ----------CCCCCCCEEEcCCCCCCCchhH-HHHHHhcCCCcccccCcCC
Q 015448          138 ----------SYFFNLNNLNLQGNPVAEYDKL-AKKVKTLLPNLCIFNARPI  178 (406)
Q Consensus       138 ----------~~l~~L~~L~Ls~N~i~~~~~~-~~~~~~~lp~L~~Ld~~~~  178 (406)
                                ..+++|+.|+|++|.+...... ....+..+++|+.|+....
T Consensus       186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n  237 (461)
T 1z7x_W          186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN  237 (461)
T ss_dssp             HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred             HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence                      1356888899998888765311 1123456788887776544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.11  E-value=1.9e-10  Score=112.27  Aligned_cols=103  Identities=27%  Similarity=0.360  Sum_probs=90.2

Q ss_pred             cEEEeeCC-CCCCCCCCCCCCCCcEEEccC-CCCCCCCC--CCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCCC
Q 015448           22 KSLSLTHK-ALSDVSCLTDFNNLERLDLSS-NNLTSLEG--LKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGKN   95 (406)
Q Consensus        22 ~~L~Ls~n-~l~~i~~l~~l~~L~~L~Ls~-N~l~~l~~--l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N   95 (406)
                      ..++++++ .|+.+|.|..+.+|++|+|++ |.|+.++.  |..|++|++|+|++|.|+.++  .|..|++|+.|+|++|
T Consensus        11 ~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             CEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            45799998 999998888999999999996 99999874  999999999999999999887  3789999999999999


Q ss_pred             CCCCCcC--CCCCCCCCEEEccCCccCCcccc
Q 015448           96 KLRSMDD--VTSVVSLRALILNDNEIVSICKL  125 (406)
Q Consensus        96 ~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~l  125 (406)
                      .|+.+|.  +..+. |+.|+|++|.+...+.+
T Consensus        91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l  121 (347)
T 2ifg_A           91 ALESLSWKTVQGLS-LQELVLSGNPLHCSCAL  121 (347)
T ss_dssp             CCSCCCSTTTCSCC-CCEEECCSSCCCCCGGG
T ss_pred             ccceeCHHHcccCC-ceEEEeeCCCccCCCcc
Confidence            9999873  44444 99999999999876553

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.97  E-value=1.6e-09  Score=105.30  Aligned_cols=84  Identities=12%  Similarity=0.059  Sum_probs=69.4

Q ss_pred             CCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCCCCCCCCc--CCCCCCCCC-EEEccCCccCCccc--cCCCCCCcEe
Q 015448           62 CVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGKNKLRSMD--DVTSVVSLR-ALILNDNEIVSICK--LDQMKELNTL  134 (406)
Q Consensus        62 L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~-~L~Ls~N~i~~l~~--l~~L~~L~~L  134 (406)
                      +++|+.|+|++|.++.|+  .|..|.+|+.|+|.+| ++.++  .|..+.+|+ .|.+.+ .++.++.  |..|++|+.|
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            678999999999999988  4889999999999988 77776  488899999 999988 7777763  8889999999


Q ss_pred             eCC------------CCCCCCCEEE
Q 015448          135 GMD------------SYFFNLNNLN  147 (406)
Q Consensus       135 ~Ls------------~~l~~L~~L~  147 (406)
                      ++.            ..+++|+.|+
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EeCCCccCccchhhhcCCcchhhhc
Confidence            884            4566777665

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.96  E-value=1.6e-11  Score=122.28  Aligned_cols=120  Identities=21%  Similarity=0.253  Sum_probs=83.0

Q ss_pred             CCCccEEEeeCCCCCCCC------CCC-CCCCCcEEEccCCCCCCCC--CC-CCCCCCcEEEecCCCCCCCC--C----C
Q 015448           18 PNSIKSLSLTHKALSDVS------CLT-DFNNLERLDLSSNNLTSLE--GL-KHCVNLKWLSLVQNKLQSLK--G----I   81 (406)
Q Consensus        18 ~~~L~~L~Ls~n~l~~i~------~l~-~l~~L~~L~Ls~N~l~~l~--~l-~~L~~L~~L~Ls~N~l~~l~--~----l   81 (406)
                      ++.|+.|+|++|.|+...      .+. ..++|++|+|++|.|+...  .+ ..+.+|+.|+|++|.|+...  .    +
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            357889999999987643      222 3468999999999887532  22 34568899999999887533  1    2


Q ss_pred             -CCCCCCcEEEcCCCCCCCC-----c-CCCCCCCCCEEEccCCccCCcc------ccCCCCCCcEeeCC
Q 015448           82 -EGLSKPTVLNVGKNKLRSM-----D-DVTSVVSLRALILNDNEIVSIC------KLDQMKELNTLGMD  137 (406)
Q Consensus        82 -~~l~~L~~L~Ls~N~i~~l-----~-~l~~l~~L~~L~Ls~N~i~~l~------~l~~L~~L~~L~Ls  137 (406)
                       ...+.|++|+|++|.|+..     . .+..+++|++|+|++|.|+...      .+..+++|++|+|+
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls  219 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVA  219 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECC
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECC
Confidence             3567899999999988762     2 3467788999999999887532      14444445555544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.78  E-value=3.1e-09  Score=110.52  Aligned_cols=156  Identities=15%  Similarity=0.140  Sum_probs=98.3

Q ss_pred             CCCccEEEeeCCCCCCCC------CCCCCCCCcEEEccCCCCCCCC-----C-CCCCCCCcEEEecCCCCCCCC------
Q 015448           18 PNSIKSLSLTHKALSDVS------CLTDFNNLERLDLSSNNLTSLE-----G-LKHCVNLKWLSLVQNKLQSLK------   79 (406)
Q Consensus        18 ~~~L~~L~Ls~n~l~~i~------~l~~l~~L~~L~Ls~N~l~~l~-----~-l~~L~~L~~L~Ls~N~l~~l~------   79 (406)
                      +++|++|+|++|.+++..      .+..+++|++|+|++|.++.+.     . +..+++|+.|+|++|.+..++      
T Consensus       163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~  242 (592)
T 3ogk_B          163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAA  242 (592)
T ss_dssp             CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHC
T ss_pred             CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhh
Confidence            466777777777655432      2235566666666666665331     1 345566666666666544332      


Q ss_pred             ----------------------CCCCCCCCcEEEcCCCCCCCCcC-CCCCCCCCEEEccCCccCCccc---cCCCCCCcE
Q 015448           80 ----------------------GIEGLSKPTVLNVGKNKLRSMDD-VTSVVSLRALILNDNEIVSICK---LDQMKELNT  133 (406)
Q Consensus        80 ----------------------~l~~l~~L~~L~Ls~N~i~~l~~-l~~l~~L~~L~Ls~N~i~~l~~---l~~L~~L~~  133 (406)
                                            .+..+++|+.|+++++....++. +..+++|++|+|++|.++....   +..+++|++
T Consensus       243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~  322 (592)
T 3ogk_B          243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV  322 (592)
T ss_dssp             TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCE
T ss_pred             hHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCE
Confidence                                  24555666666666655555553 4567889999999988654321   577888999


Q ss_pred             eeCC------------CCCCCCCEEEcC-----------CCCCCCchhHHHHHHhcCCCcccccC
Q 015448          134 LGMD------------SYFFNLNNLNLQ-----------GNPVAEYDKLAKKVKTLLPNLCIFNA  175 (406)
Q Consensus       134 L~Ls------------~~l~~L~~L~Ls-----------~N~i~~~~~~~~~~~~~lp~L~~Ld~  175 (406)
                      |+|+            ..+++|++|+|+           .|.++.....  .+...+++|+.|+.
T Consensus       323 L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~--~l~~~~~~L~~L~l  385 (592)
T 3ogk_B          323 LETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI--ALAQGCQELEYMAV  385 (592)
T ss_dssp             EEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH--HHHHHCTTCSEEEE
T ss_pred             EeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH--HHHhhCccCeEEEe
Confidence            8885            467889999999           3555543221  23456888887765

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.74  E-value=1.6e-08  Score=96.25  Aligned_cols=112  Identities=24%  Similarity=0.389  Sum_probs=86.2

Q ss_pred             CCCCCCCcE--EEecCCCCCCCCC-----CCCCCCCcEEEcCCCCCCCCcCCC----CCCCCCEEEccCCccCCccccCC
Q 015448           59 LKHCVNLKW--LSLVQNKLQSLKG-----IEGLSKPTVLNVGKNKLRSMDDVT----SVVSLRALILNDNEIVSICKLDQ  127 (406)
Q Consensus        59 l~~L~~L~~--L~Ls~N~l~~l~~-----l~~l~~L~~L~Ls~N~i~~l~~l~----~l~~L~~L~Ls~N~i~~l~~l~~  127 (406)
                      |...+.|..  ++++.|.+..++.     ...+++|+.|+|++|.|+.++.+.    .+++|+.|+|++|.|+.+..+..
T Consensus       137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~  216 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK  216 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG
T ss_pred             cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh
Confidence            344444554  5666675544442     245789999999999999986543    78999999999999998866665


Q ss_pred             CCCCcEeeCCCCCCCCCEEEcCCCCCCC----chhHHHHHHhcCCCcccccCcCCCh
Q 015448          128 MKELNTLGMDSYFFNLNNLNLQGNPVAE----YDKLAKKVKTLLPNLCIFNARPIDR  180 (406)
Q Consensus       128 L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~----~~~~~~~~~~~lp~L~~Ld~~~~~~  180 (406)
                      +.         .+ +|+.|+|++|+++.    .+.|+..++..+|+|+.||+.+++.
T Consensus       217 l~---------~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~v~p  263 (267)
T 3rw6_A          217 IK---------GL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPP  263 (267)
T ss_dssp             GT---------TS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCBCCC
T ss_pred             cc---------cC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCcCCCC
Confidence            54         34 89999999999985    3567778899999999999998865

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.71  E-value=4.9e-09  Score=109.07  Aligned_cols=156  Identities=13%  Similarity=0.192  Sum_probs=107.7

Q ss_pred             CCccEEEeeCCC-CCC--CC-CCCCCCCCcEEEccCCCCCCCC------CCCCCCCCcEEEecCCCCCCCC------CCC
Q 015448           19 NSIKSLSLTHKA-LSD--VS-CLTDFNNLERLDLSSNNLTSLE------GLKHCVNLKWLSLVQNKLQSLK------GIE   82 (406)
Q Consensus        19 ~~L~~L~Ls~n~-l~~--i~-~l~~l~~L~~L~Ls~N~l~~l~------~l~~L~~L~~L~Ls~N~l~~l~------~l~   82 (406)
                      .+|++|+|++|. ++.  +. .+..+++|++|+|++|.++...      .+..+++|++|+|++|.++.+.      .+.
T Consensus       138 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~  217 (592)
T 3ogk_B          138 DDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR  217 (592)
T ss_dssp             GGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH
T ss_pred             ccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh
Confidence            349999999987 221  12 2347899999999999886542      1356899999999999997433      146


Q ss_pred             CCCCCcEEEcCCCCCCCCc-CCCCCCCCCEEEccCCccC-----CccccCCCCCCcEeeCC-----------CCCCCCCE
Q 015448           83 GLSKPTVLNVGKNKLRSMD-DVTSVVSLRALILNDNEIV-----SICKLDQMKELNTLGMD-----------SYFFNLNN  145 (406)
Q Consensus        83 ~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~N~i~-----~l~~l~~L~~L~~L~Ls-----------~~l~~L~~  145 (406)
                      .+++|+.|+|++|.+..++ .+..+++|+.|+++.+...     ....+..+++|+.|+++           ..+++|++
T Consensus       218 ~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~  297 (592)
T 3ogk_B          218 NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRK  297 (592)
T ss_dssp             HCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCE
T ss_pred             hCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcE
Confidence            7899999999999988876 3667788888888753221     11235566677777665           34667888


Q ss_pred             EEcCCCCCCCchhHHHHHHhcCCCcccccCc
Q 015448          146 LNLQGNPVAEYDKLAKKVKTLLPNLCIFNAR  176 (406)
Q Consensus       146 L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~  176 (406)
                      |+|++|.+.....  ..++..+++|+.|+..
T Consensus       298 L~Ls~~~l~~~~~--~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          298 LDLLYALLETEDH--CTLIQKCPNLEVLETR  326 (592)
T ss_dssp             EEETTCCCCHHHH--HHHHTTCTTCCEEEEE
T ss_pred             EecCCCcCCHHHH--HHHHHhCcCCCEEecc
Confidence            8888777544332  1234566666666554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.68  E-value=7.4e-08  Score=96.72  Aligned_cols=151  Identities=13%  Similarity=0.157  Sum_probs=102.0

Q ss_pred             CCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCCCC--CCCCCCCCc
Q 015448           15 TCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPT   88 (406)
Q Consensus        15 ~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~   88 (406)
                      +..+.+|+.|+|.+|.++.++  +|. +.+|+.+.|..+ ++.++  .|.+|.+|+.|.|..| ++.|+  .|.. .+|+
T Consensus       176 F~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~  251 (401)
T 4fdw_A          176 FYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGIT  251 (401)
T ss_dssp             TTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCS
T ss_pred             hhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCcc
Confidence            455788999999999988886  555 678888888744 66664  4888888888888764 56665  3555 5777


Q ss_pred             EEEcCCCCCCCCc--CCCCCCCCCEEEccCCccC-----Ccc--ccCCCCCCcEeeCC-----------CCCCCCCEEEc
Q 015448           89 VLNVGKNKLRSMD--DVTSVVSLRALILNDNEIV-----SIC--KLDQMKELNTLGMD-----------SYFFNLNNLNL  148 (406)
Q Consensus        89 ~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~-----~l~--~l~~L~~L~~L~Ls-----------~~l~~L~~L~L  148 (406)
                      .+.| .+.++.++  .|..+++|+.|.+.+|.+.     .++  .|..|++|+.|.|.           ..|++|+.|.|
T Consensus       252 ~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~l  330 (401)
T 4fdw_A          252 TVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTI  330 (401)
T ss_dssp             EEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEE
T ss_pred             EEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEE
Confidence            7777 34455554  4667777777777776654     333  26677777777765           45677777777


Q ss_pred             CCCCCCCchhHHHHHHhcCCCcccccC
Q 015448          149 QGNPVAEYDKLAKKVKTLLPNLCIFNA  175 (406)
Q Consensus       149 s~N~i~~~~~~~~~~~~~lp~L~~Ld~  175 (406)
                      ..| +..+....   +..| +|+.|+.
T Consensus       331 p~~-l~~I~~~a---F~~~-~L~~l~l  352 (401)
T 4fdw_A          331 PAN-VTQINFSA---FNNT-GIKEVKV  352 (401)
T ss_dssp             CTT-CCEECTTS---SSSS-CCCEEEE
T ss_pred             Ccc-ccEEcHHh---CCCC-CCCEEEE
Confidence            544 55554332   4555 6665543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.67  E-value=8.7e-08  Score=96.22  Aligned_cols=147  Identities=12%  Similarity=0.169  Sum_probs=117.5

Q ss_pred             CCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEc
Q 015448           19 NSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNV   92 (406)
Q Consensus        19 ~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~L   92 (406)
                      .+|+.+.|.. .+..++  +|..|.+|+.|+|+.|.++.++.  |. +.+|+.+.|..+ +..|+  .|..|++|+.|.|
T Consensus       157 ~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l  233 (401)
T 4fdw_A          157 STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI  233 (401)
T ss_dssp             CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred             CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence            4699999986 777775  89999999999999999998864  55 689999999844 88887  5899999999999


Q ss_pred             CCCCCCCCc--CCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC-----------------CCCCCCCEEEcCCC
Q 015448           93 GKNKLRSMD--DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD-----------------SYFFNLNNLNLQGN  151 (406)
Q Consensus        93 s~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls-----------------~~l~~L~~L~Ls~N  151 (406)
                      ..| ++.++  .|.. .+|+.+.| .+.++.++.  |..|++|+.|.+.                 ..|++|+.|.|. +
T Consensus       234 ~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~  309 (401)
T 4fdw_A          234 PEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-E  309 (401)
T ss_dssp             CTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-T
T ss_pred             CCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-C
Confidence            875 66665  3555 78999999 456777753  8889999998764                 567899999999 4


Q ss_pred             CCCCchhHHHHHHhcCCCcccccC
Q 015448          152 PVAEYDKLAKKVKTLLPNLCIFNA  175 (406)
Q Consensus       152 ~i~~~~~~~~~~~~~lp~L~~Ld~  175 (406)
                      .+..+....   +..|++|+.+..
T Consensus       310 ~i~~I~~~a---F~~c~~L~~l~l  330 (401)
T 4fdw_A          310 SIRILGQGL---LGGNRKVTQLTI  330 (401)
T ss_dssp             TCCEECTTT---TTTCCSCCEEEE
T ss_pred             ceEEEhhhh---hcCCCCccEEEE
Confidence            577776543   677888887765

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.66  E-value=1.9e-09  Score=112.17  Aligned_cols=100  Identities=24%  Similarity=0.335  Sum_probs=66.4

Q ss_pred             CCCccEEEeeCCCCCCCC--CCC-CCCCCcEEEccCC-CCCC--CCC-CCCCCCCcEEEecCCCCCC-----CCC-CCCC
Q 015448           18 PNSIKSLSLTHKALSDVS--CLT-DFNNLERLDLSSN-NLTS--LEG-LKHCVNLKWLSLVQNKLQS-----LKG-IEGL   84 (406)
Q Consensus        18 ~~~L~~L~Ls~n~l~~i~--~l~-~l~~L~~L~Ls~N-~l~~--l~~-l~~L~~L~~L~Ls~N~l~~-----l~~-l~~l   84 (406)
                      +++|++|+|++|.+++..  .+. .+++|++|+|++| .++.  ++. +..+++|++|+|++|.++.     ++. ...+
T Consensus       104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~  183 (594)
T 2p1m_B          104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY  183 (594)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred             CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence            567888888888776542  332 5778888888887 4544  333 3367888888888887664     222 3467


Q ss_pred             CCCcEEEcCCCC--CCC--CcC-CCCCCCCCEEEccCC
Q 015448           85 SKPTVLNVGKNK--LRS--MDD-VTSVVSLRALILNDN  117 (406)
Q Consensus        85 ~~L~~L~Ls~N~--i~~--l~~-l~~l~~L~~L~Ls~N  117 (406)
                      ++|+.|+|++|.  +..  ++. +..+++|++|+|++|
T Consensus       184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            788888888886  211  111 234678888888877

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.66  E-value=8e-10  Score=109.99  Aligned_cols=133  Identities=20%  Similarity=0.190  Sum_probs=101.4

Q ss_pred             CCCccEEEeeCCCCCCCC---CCCCCCCCcEEEccCCCCCCCC--C----C-CCCCCCcEEEecCCCCCCC-----C-CC
Q 015448           18 PNSIKSLSLTHKALSDVS---CLTDFNNLERLDLSSNNLTSLE--G----L-KHCVNLKWLSLVQNKLQSL-----K-GI   81 (406)
Q Consensus        18 ~~~L~~L~Ls~n~l~~i~---~l~~l~~L~~L~Ls~N~l~~l~--~----l-~~L~~L~~L~Ls~N~l~~l-----~-~l   81 (406)
                      +.+|++|+|++|.|++..   .+..+++|++|+|++|.|+...  .    + ...++|++|+|++|.|+..     + .+
T Consensus       100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L  179 (372)
T 3un9_A          100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL  179 (372)
T ss_dssp             SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred             CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence            468999999999997642   2335678999999999998652  1    2 3578999999999999752     2 35


Q ss_pred             CCCCCCcEEEcCCCCCCCC------cCCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCCCCCCCCCEEEcCCCCC
Q 015448           82 EGLSKPTVLNVGKNKLRSM------DDVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDSYFFNLNNLNLQGNPV  153 (406)
Q Consensus        82 ~~l~~L~~L~Ls~N~i~~l------~~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i  153 (406)
                      ..+++|++|+|++|.|+..      ..+..+++|+.|+|++|.|+....  +..  .|      ..+++|++|+|++|+|
T Consensus       180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~--~L------~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR--AA------REHPSLELLHLYFNEL  251 (372)
T ss_dssp             HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH--HH------HHCSSCCEEECTTSSC
T ss_pred             hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH--HH------HhCCCCCEEeccCCCC
Confidence            6788999999999999862      246677899999999999986432  111  01      1346899999999999


Q ss_pred             CCchh
Q 015448          154 AEYDK  158 (406)
Q Consensus       154 ~~~~~  158 (406)
                      .....
T Consensus       252 ~~~g~  256 (372)
T 3un9_A          252 SSEGR  256 (372)
T ss_dssp             CHHHH
T ss_pred             CHHHH
Confidence            87654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.41  E-value=2e-08  Score=104.33  Aligned_cols=159  Identities=14%  Similarity=0.142  Sum_probs=94.9

Q ss_pred             CCCCccEEEeeCCCCCCC--C-CCCCCCCCcEEEccC---------CCCCCC--CCC-CCCCCCcEEEecCCCCCCCC--
Q 015448           17 DPNSIKSLSLTHKALSDV--S-CLTDFNNLERLDLSS---------NNLTSL--EGL-KHCVNLKWLSLVQNKLQSLK--   79 (406)
Q Consensus        17 ~~~~L~~L~Ls~n~l~~i--~-~l~~l~~L~~L~Ls~---------N~l~~l--~~l-~~L~~L~~L~Ls~N~l~~l~--   79 (406)
                      .+++|+.|++++| +++.  + ....+++|++|+|+.         +.++..  ..+ ..+++|+.|.++.|.++...  
T Consensus       312 ~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~  390 (594)
T 2p1m_B          312 QCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALI  390 (594)
T ss_dssp             TCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHH
T ss_pred             cCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHH
Confidence            5678899999887 4432  2 223477888888843         333321  112 23677888877777776422  


Q ss_pred             CC-CCCCCCcEEEcC--C----CCCCCCcC-------CCCCCCCCEEEccCCccCCcc--ccCC-CCCCcEeeCC-----
Q 015448           80 GI-EGLSKPTVLNVG--K----NKLRSMDD-------VTSVVSLRALILNDNEIVSIC--KLDQ-MKELNTLGMD-----  137 (406)
Q Consensus        80 ~l-~~l~~L~~L~Ls--~----N~i~~l~~-------l~~l~~L~~L~Ls~N~i~~l~--~l~~-L~~L~~L~Ls-----  137 (406)
                      .+ ..+++|+.|+|+  +    |.++..+.       +..+++|+.|+|++ .++...  .+.. +++|+.|+|+     
T Consensus       391 ~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~  469 (594)
T 2p1m_B          391 TIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDS  469 (594)
T ss_dssp             HHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSS
T ss_pred             HHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCc
Confidence            23 246777888877  3    45554321       34567777777766 443321  2322 6677777776     


Q ss_pred             --------CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCcCCC
Q 015448          138 --------SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPID  179 (406)
Q Consensus       138 --------~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~~~~  179 (406)
                              ..+++|+.|+|++|+++....  ..+...+++|+.|+...+.
T Consensus       470 ~~~~~~l~~~~~~L~~L~L~~n~~~~~~~--~~~~~~l~~L~~L~l~~~~  517 (594)
T 2p1m_B          470 DLGMHHVLSGCDSLRKLEIRDCPFGDKAL--LANASKLETMRSLWMSSCS  517 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEEEESCSCCHHHH--HHTGGGGGGSSEEEEESSC
T ss_pred             HHHHHHHHhcCCCcCEEECcCCCCcHHHH--HHHHHhCCCCCEEeeeCCC
Confidence                    346888888888888843322  1234567888877655443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.37  E-value=1.4e-07  Score=93.55  Aligned_cols=149  Identities=15%  Similarity=0.135  Sum_probs=82.2

Q ss_pred             CCCccEEEeeCCCCCC----------CC-CCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCC--CC--C
Q 015448           18 PNSIKSLSLTHKALSD----------VS-CLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK--GI--E   82 (406)
Q Consensus        18 ~~~L~~L~Ls~n~l~~----------i~-~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~--~l--~   82 (406)
                      +++|+.|.|..+.+..          +. .+..+|+|+.|.|++|.-..++.+. +++|+.|+|..|.+..-.  .+  .
T Consensus       138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~  216 (362)
T 2ra8_A          138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGS  216 (362)
T ss_dssp             HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHS
T ss_pred             cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHc
Confidence            4577777776543211          21 2345677777777776322333443 677777777777665211  22  3


Q ss_pred             CCCCCcEEEcCC--CC------CCCCc-CC--CCCCCCCEEEccCCccCCcc--ccCCCCCCcEeeCCCCCCCCCEEEcC
Q 015448           83 GLSKPTVLNVGK--NK------LRSMD-DV--TSVVSLRALILNDNEIVSIC--KLDQMKELNTLGMDSYFFNLNNLNLQ  149 (406)
Q Consensus        83 ~l~~L~~L~Ls~--N~------i~~l~-~l--~~l~~L~~L~Ls~N~i~~l~--~l~~L~~L~~L~Ls~~l~~L~~L~Ls  149 (406)
                      .+++|+.|+|+.  |.      +..+. .+  ..+++|++|+|++|.+....  .+...         ..+++|+.|+|+
T Consensus       217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a---------~~~~~L~~LdLs  287 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES---------DILPQLETMDIS  287 (362)
T ss_dssp             BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC---------SSGGGCSEEECC
T ss_pred             cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC---------ccCCCCCEEECC
Confidence            567777777642  11      11111 12  24677777777777765321  11111         246788999999


Q ss_pred             CCCCCCchhHHH-HHHhcCCCcccccCc
Q 015448          150 GNPVAEYDKLAK-KVKTLLPNLCIFNAR  176 (406)
Q Consensus       150 ~N~i~~~~~~~~-~~~~~lp~L~~Ld~~  176 (406)
                      .|.|.....-.. ..+..+++|+.|+..
T Consensus       288 ~n~L~d~G~~~L~~~L~~l~~L~~L~L~  315 (362)
T 2ra8_A          288 AGVLTDEGARLLLDHVDKIKHLKFINMK  315 (362)
T ss_dssp             SSCCBHHHHHHHHTTHHHHTTCSEEECC
T ss_pred             CCCCChHHHHHHHhhcccCCcceEEECC
Confidence            998877532111 112456788877654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.31  E-value=4.9e-08  Score=87.31  Aligned_cols=114  Identities=18%  Similarity=0.144  Sum_probs=84.8

Q ss_pred             CCCCCCCCcEEEccCC-CCCCC------CCCCCCCCCcEEEecCCCCCC-----CC-CCCCCCCCcEEEcCCCCCCCC--
Q 015448           36 CLTDFNNLERLDLSSN-NLTSL------EGLKHCVNLKWLSLVQNKLQS-----LK-GIEGLSKPTVLNVGKNKLRSM--  100 (406)
Q Consensus        36 ~l~~l~~L~~L~Ls~N-~l~~l------~~l~~L~~L~~L~Ls~N~l~~-----l~-~l~~l~~L~~L~Ls~N~i~~l--  100 (406)
                      .+...++|++|+|++| .|...      ..+...++|++|+|++|.|..     +. .+...+.|++|+|++|.|+.-  
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            4667889999999999 88753      236678899999999999874     22 355667899999999999872  


Q ss_pred             ----cCCCCCCCCCEEEc--cCCccCCccc--cCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCch
Q 015448          101 ----DDVTSVVSLRALIL--NDNEIVSICK--LDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYD  157 (406)
Q Consensus       101 ----~~l~~l~~L~~L~L--s~N~i~~l~~--l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~  157 (406)
                          ..+...++|++|+|  ++|.|..-..  +..  .|      ...++|++|+|++|.|....
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~--~L------~~n~~L~~L~L~~n~i~~~~  167 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN--ML------EKNTTLLKFGYHFTQQGPRL  167 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH--HH------HHCSSCCEEECCCSSHHHHH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH--HH------HhCCCcCEEeccCCCCChHH
Confidence                25677889999999  8899876431  111  11      13468999999999886544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.31  E-value=3.2e-07  Score=90.98  Aligned_cols=157  Identities=15%  Similarity=0.128  Sum_probs=97.7

Q ss_pred             CCCCccEEEeeCCCCCC--C--------CCCCCCCCCcEEEccCCCCCC----------CCC-CCCCCCCcEEEecCCCC
Q 015448           17 DPNSIKSLSLTHKALSD--V--------SCLTDFNNLERLDLSSNNLTS----------LEG-LKHCVNLKWLSLVQNKL   75 (406)
Q Consensus        17 ~~~~L~~L~Ls~n~l~~--i--------~~l~~l~~L~~L~Ls~N~l~~----------l~~-l~~L~~L~~L~Ls~N~l   75 (406)
                      .+..++.|.+..+.+..  .        .++..+++|+.|.+..+.+..          +.. +..+|+|+.|+|++|.-
T Consensus       105 ~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~  184 (362)
T 2ra8_A          105 KLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN  184 (362)
T ss_dssp             TGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT
T ss_pred             CchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC
Confidence            34568889888766541  1        134567899999997764321          212 45679999999998842


Q ss_pred             CCCCCCCCCCCCcEEEcCCCCCCC--CcCC--CCCCCCCEEEccC--CccCCccccCCCCCCcEeeCCCCCCCCCEEEcC
Q 015448           76 QSLKGIEGLSKPTVLNVGKNKLRS--MDDV--TSVVSLRALILND--NEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQ  149 (406)
Q Consensus        76 ~~l~~l~~l~~L~~L~Ls~N~i~~--l~~l--~~l~~L~~L~Ls~--N~i~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls  149 (406)
                      ..++.+. +++|+.|+|..|.+..  +..+  ..+++|+.|+|+.  |....-..+..+..+   .....+|+|+.|+|.
T Consensus       185 l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~---l~~~~~p~Lr~L~L~  260 (362)
T 2ra8_A          185 LSIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL---FSKDRFPNLKWLGIV  260 (362)
T ss_dssp             CBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG---SCTTTCTTCCEEEEE
T ss_pred             ceecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH---HhcCCCCCcCEEeCC
Confidence            2455543 8899999999988765  2223  3689999999864  221111111111110   000257899999999


Q ss_pred             CCCCCCchhHHHHHHhcCCCcccccCcC
Q 015448          150 GNPVAEYDKLAKKVKTLLPNLCIFNARP  177 (406)
Q Consensus       150 ~N~i~~~~~~~~~~~~~lp~L~~Ld~~~  177 (406)
                      +|.+.........-...+|+|+.|+.+.
T Consensus       261 ~~~i~~~~~~~la~a~~~~~L~~LdLs~  288 (362)
T 2ra8_A          261 DAEEQNVVVEMFLESDILPQLETMDISA  288 (362)
T ss_dssp             SCTTHHHHHHHHHHCSSGGGCSEEECCS
T ss_pred             CCCCchHHHHHHHhCccCCCCCEEECCC
Confidence            9998754321111112578999888754

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.31  E-value=3.6e-08  Score=88.20  Aligned_cols=115  Identities=12%  Similarity=0.088  Sum_probs=76.1

Q ss_pred             CCCCCCCcEEEecCC-CCCC-----CC-CCCCCCCCcEEEcCCCCCCCC------cCCCCCCCCCEEEccCCccCCcccc
Q 015448           59 LKHCVNLKWLSLVQN-KLQS-----LK-GIEGLSKPTVLNVGKNKLRSM------DDVTSVVSLRALILNDNEIVSICKL  125 (406)
Q Consensus        59 l~~L~~L~~L~Ls~N-~l~~-----l~-~l~~l~~L~~L~Ls~N~i~~l------~~l~~l~~L~~L~Ls~N~i~~l~~l  125 (406)
                      +...++|++|+|++| .|..     +. .+...+.|++|+|++|.|..-      ..+...++|++|+|++|.|..-...
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            566788999999988 8874     22 366678899999999988762      1355567889999999988763210


Q ss_pred             CCCCCCcEeeCCCCCCCCCEEEc--CCCCCCCchhH-HHHHHhcCCCcccccCcCCC
Q 015448          126 DQMKELNTLGMDSYFFNLNNLNL--QGNPVAEYDKL-AKKVKTLLPNLCIFNARPID  179 (406)
Q Consensus       126 ~~L~~L~~L~Ls~~l~~L~~L~L--s~N~i~~~~~~-~~~~~~~lp~L~~Ld~~~~~  179 (406)
                      .-...|      ...++|++|+|  ++|.|...... ....+...++|+.|+.....
T Consensus       112 ~l~~~L------~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          112 ALVEAL------QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHGG------GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHH------HhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            000011      13457888888  78888765321 22345667888888766554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.15  E-value=1e-06  Score=83.63  Aligned_cols=76  Identities=22%  Similarity=0.360  Sum_probs=56.6

Q ss_pred             EEccCCCCCCCCC-----CCCCCCCcEEEecCCCCCCCCCC----CCCCCCcEEEcCCCCCCCCcCCCCCC--CCCEEEc
Q 015448           46 LDLSSNNLTSLEG-----LKHCVNLKWLSLVQNKLQSLKGI----EGLSKPTVLNVGKNKLRSMDDVTSVV--SLRALIL  114 (406)
Q Consensus        46 L~Ls~N~l~~l~~-----l~~L~~L~~L~Ls~N~l~~l~~l----~~l~~L~~L~Ls~N~i~~l~~l~~l~--~L~~L~L  114 (406)
                      ++++.|.+..++.     ..++++|+.|+|++|.|+.++++    ..+++|+.|+|++|.|+++..+..+.  +|+.|+|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L  227 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWL  227 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEEC
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEc
Confidence            4555554433322     13578999999999999987754    37899999999999999876544444  8999999


Q ss_pred             cCCccCC
Q 015448          115 NDNEIVS  121 (406)
Q Consensus       115 s~N~i~~  121 (406)
                      ++|.+..
T Consensus       228 ~~Npl~~  234 (267)
T 3rw6_A          228 DGNSLCD  234 (267)
T ss_dssp             TTSTTGG
T ss_pred             cCCcCcc
Confidence            9999864

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.01  E-value=1.7e-06  Score=76.98  Aligned_cols=100  Identities=20%  Similarity=0.304  Sum_probs=65.2

Q ss_pred             CCCcEEEecCCCCCCC--CCCCCCCCCcEEEcCCCC-CCC--CcCCCCC----CCCCEEEccCCc-cCCccccCCCCCCc
Q 015448           63 VNLKWLSLVQNKLQSL--KGIEGLSKPTVLNVGKNK-LRS--MDDVTSV----VSLRALILNDNE-IVSICKLDQMKELN  132 (406)
Q Consensus        63 ~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~-i~~--l~~l~~l----~~L~~L~Ls~N~-i~~l~~l~~L~~L~  132 (406)
                      ..|+.|+|++|.|+..  ..+..+++|+.|+|++|. |++  +..+..+    ++|++|+|++|. |++-. +..+    
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G-l~~L----  135 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG-IIAL----  135 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH-HHHG----
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH-HHHH----
Confidence            4677888888777643  356778888888888885 655  3344443    478889998874 66532 2222    


Q ss_pred             EeeCCCCCCCCCEEEcCCCC-CCCchhHHHHHHhcCCCccc
Q 015448          133 TLGMDSYFFNLNNLNLQGNP-VAEYDKLAKKVKTLLPNLCI  172 (406)
Q Consensus       133 ~L~Ls~~l~~L~~L~Ls~N~-i~~~~~~~~~~~~~lp~L~~  172 (406)
                           ..+++|++|+|++++ |++.......+...+|++++
T Consensus       136 -----~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V  171 (176)
T 3e4g_A          136 -----HHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL  171 (176)
T ss_dssp             -----GGCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred             -----hcCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence                 145688888888886 55544334446677888763

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.49  E-value=1.7e-05  Score=70.48  Aligned_cols=80  Identities=11%  Similarity=0.221  Sum_probs=51.9

Q ss_pred             CCcEEEccCCCCCCC--CCCCCCCCCcEEEecCCC-CCC--CCCCCCC----CCCcEEEcCCCC-CCC--CcCCCCCCCC
Q 015448           42 NLERLDLSSNNLTSL--EGLKHCVNLKWLSLVQNK-LQS--LKGIEGL----SKPTVLNVGKNK-LRS--MDDVTSVVSL  109 (406)
Q Consensus        42 ~L~~L~Ls~N~l~~l--~~l~~L~~L~~L~Ls~N~-l~~--l~~l~~l----~~L~~L~Ls~N~-i~~--l~~l~~l~~L  109 (406)
                      .|+.|+|+++.|+..  ..+..|++|+.|+|++|. |++  +..+..+    ++|+.|+|++|. |++  +..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            577777777776643  346677777777777774 553  2223332    467888887774 665  4456677888


Q ss_pred             CEEEccCCc-cCC
Q 015448          110 RALILNDNE-IVS  121 (406)
Q Consensus       110 ~~L~Ls~N~-i~~  121 (406)
                      ++|+|++|. |++
T Consensus       142 ~~L~L~~c~~Itd  154 (176)
T 3e4g_A          142 KYLFLSDLPGVKE  154 (176)
T ss_dssp             CEEEEESCTTCCC
T ss_pred             CEEECCCCCCCCc
Confidence            888888874 554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.47  E-value=0.00039  Score=68.12  Aligned_cols=78  Identities=19%  Similarity=0.350  Sum_probs=37.7

Q ss_pred             CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCCCCCCCCc--CCCCCCCC
Q 015448           36 CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGKNKLRSMD--DVTSVVSL  109 (406)
Q Consensus        36 ~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L  109 (406)
                      .+..+..|+.+.+..+ ++.+.  .|.++.+|+.+.+..+ +..++  .|..|.+|+.+.+.++.++.++  .+.++.+|
T Consensus       235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L  312 (379)
T 4h09_A          235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL  312 (379)
T ss_dssp             TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred             cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence            3444555555555433 33332  2445555555555332 44444  2455555555555555555443  24455555


Q ss_pred             CEEEcc
Q 015448          110 RALILN  115 (406)
Q Consensus       110 ~~L~Ls  115 (406)
                      +.+.|.
T Consensus       313 ~~i~lp  318 (379)
T 4h09_A          313 SSVTLP  318 (379)
T ss_dssp             CEEECC
T ss_pred             CEEEcC
Confidence            555554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.31  E-value=0.0012  Score=65.30  Aligned_cols=101  Identities=12%  Similarity=0.271  Sum_probs=52.6

Q ss_pred             CCCCCCCCcEEEccCCCCCCC--CCCCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCCCCCCCCc--CCCCCCCC
Q 015448           36 CLTDFNNLERLDLSSNNLTSL--EGLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGKNKLRSMD--DVTSVVSL  109 (406)
Q Consensus        36 ~l~~l~~L~~L~Ls~N~l~~l--~~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L  109 (406)
                      +|..+..|+.+.+..+.. .+  ..|.++..|+.+.+. +.+..|+  .|.+|.+|+.+.|..+ ++.+.  .|..+.+|
T Consensus       260 aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L  336 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL  336 (394)
T ss_dssp             TTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred             eeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence            345555556555543322 22  135556666666664 3455555  3556666666666543 44443  35556666


Q ss_pred             CEEEccCCccCCccc--cCCCCCCcEeeCCCCCCCCCEEEcCCCC
Q 015448          110 RALILNDNEIVSICK--LDQMKELNTLGMDSYFFNLNNLNLQGNP  152 (406)
Q Consensus       110 ~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~  152 (406)
                      +.+.|..+ ++.+..  |.            .|.+|+.+++.++.
T Consensus       337 ~~i~ip~s-v~~I~~~aF~------------~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          337 ERIAIPSS-VTKIPESAFS------------NCTALNNIEYSGSR  368 (394)
T ss_dssp             CEEEECTT-CCBCCGGGGT------------TCTTCCEEEESSCH
T ss_pred             CEEEECcc-cCEEhHhHhh------------CCCCCCEEEECCce
Confidence            66666432 444432  33            45566677776653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.30  E-value=0.0019  Score=63.19  Aligned_cols=98  Identities=13%  Similarity=0.245  Sum_probs=67.8

Q ss_pred             CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCCCCCCCCc--CCCCCCCC
Q 015448           36 CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGKNKLRSMD--DVTSVVSL  109 (406)
Q Consensus        36 ~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L  109 (406)
                      .+..+.+|+.+.+..+ +..+.  .+..+..|+.+.+..+ ++.|.  .+..+..|+.+.+..+ +..++  .+..+.+|
T Consensus       212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L  288 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL  288 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred             ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence            4455667777777544 33332  4777888888888765 66666  4778888999888654 55554  47788899


Q ss_pred             CEEEccCCccCCccc--cCCCCCCcEeeC
Q 015448          110 RALILNDNEIVSICK--LDQMKELNTLGM  136 (406)
Q Consensus       110 ~~L~Ls~N~i~~l~~--l~~L~~L~~L~L  136 (406)
                      +.+.+.++.++.++.  |..|.+|+.+.|
T Consensus       289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~l  317 (379)
T 4h09_A          289 TKVVMDNSAIETLEPRVFMDCVKLSSVTL  317 (379)
T ss_dssp             CEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccccccccceehhhhhcCCCCCCEEEc
Confidence            999998888887764  666655555444

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.28  E-value=0.00091  Score=66.06  Aligned_cols=146  Identities=16%  Similarity=0.198  Sum_probs=84.7

Q ss_pred             CCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCC-CCCCCCCCCcEEEecCCCCCCCCCCCCCCCCcEEEcCC
Q 015448           18 PNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSL-EGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGK   94 (406)
Q Consensus        18 ~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l-~~l~~L~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~   94 (406)
                      ...|+.+.+..+ ++.+.  .+..+..|+.+.+..+...-- ..|..+..|+.+.+..+.+.. ..+..+.+|+.+.+..
T Consensus       229 ~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~-~~F~~~~~L~~i~l~~  306 (394)
T 4fs7_A          229 KTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE-KTFYGCSSLTEVKLLD  306 (394)
T ss_dssp             TCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECT-TTTTTCTTCCEEEECT
T ss_pred             cCCCceEEECCC-ceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeecc-cccccccccccccccc
Confidence            456777777543 44443  677888888888876643311 236666777776665543211 1356666777777654


Q ss_pred             CCCCCCc--CCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC-----------CCCCCCCEEEcCCCCCCCchhH
Q 015448           95 NKLRSMD--DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD-----------SYFFNLNNLNLQGNPVAEYDKL  159 (406)
Q Consensus        95 N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls-----------~~l~~L~~L~Ls~N~i~~~~~~  159 (406)
                      + ++.++  .+..+.+|+.+.|..+ ++.+..  |..|.+|+.+.|.           ..|++|+.++|..+ +..+. +
T Consensus       307 ~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~~-~~~~~-~  382 (394)
T 4fs7_A          307 S-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLSLRKIGANAFQGCINLKKVELPKR-LEQYR-Y  382 (394)
T ss_dssp             T-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTTCCEECTTTBTTCTTCCEEEEEGG-GGGGG-G
T ss_pred             c-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECccccEehHHHhhCCCCCCEEEECCC-CEEhh-h
Confidence            4 44443  3566667777777543 555542  5666666666655           46677788877643 22221 1


Q ss_pred             HHHHHhcCCCccc
Q 015448          160 AKKVKTLLPNLCI  172 (406)
Q Consensus       160 ~~~~~~~lp~L~~  172 (406)
                         .+..|++|+.
T Consensus       383 ---~F~~c~~L~~  392 (394)
T 4fs7_A          383 ---DFEDTTKFKW  392 (394)
T ss_dssp             ---GBCTTCEEEE
T ss_pred             ---eecCCCCCcE
Confidence               2455666654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.24  E-value=0.00086  Score=66.23  Aligned_cols=100  Identities=10%  Similarity=0.265  Sum_probs=79.5

Q ss_pred             CCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCCCCC--CCCCCCCCcE
Q 015448           16 CDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTV   89 (406)
Q Consensus        16 ~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~   89 (406)
                      ..+..|+.+.+..+. ..+.  +|..+.+|+.+.+. +.++.++  .|.+|.+|+.+.|..+ ++.|.  .|.+|.+|+.
T Consensus       262 ~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~  338 (394)
T 4gt6_A          262 DSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLER  338 (394)
T ss_dssp             TTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred             eecccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCE
Confidence            345778888886543 3343  78899999999996 5577665  4899999999999864 77777  5999999999


Q ss_pred             EEcCCCCCCCCc--CCCCCCCCCEEEccCCcc
Q 015448           90 LNVGKNKLRSMD--DVTSVVSLRALILNDNEI  119 (406)
Q Consensus        90 L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i  119 (406)
                      +.|..+ ++.+.  .|.++.+|+.+.+.++..
T Consensus       339 i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~  369 (394)
T 4gt6_A          339 IAIPSS-VTKIPESAFSNCTALNNIEYSGSRS  369 (394)
T ss_dssp             EEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred             EEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence            999755 77775  588999999999998754

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.07  E-value=8.3e-05  Score=67.23  Aligned_cols=111  Identities=14%  Similarity=0.113  Sum_probs=76.2

Q ss_pred             CCCCCCCCcEEEccCC-CCCCC------CCCCCCCCCcEEEecCCCCCCCC------CCCCCCCCcEEEcCCCCCCCC--
Q 015448           36 CLTDFNNLERLDLSSN-NLTSL------EGLKHCVNLKWLSLVQNKLQSLK------GIEGLSKPTVLNVGKNKLRSM--  100 (406)
Q Consensus        36 ~l~~l~~L~~L~Ls~N-~l~~l------~~l~~L~~L~~L~Ls~N~l~~l~------~l~~l~~L~~L~Ls~N~i~~l--  100 (406)
                      .+..-+.|+.|+|++| .|..-      ..+..-..|+.|+|++|.|.+..      .+..-+.|++|+|++|.|+.-  
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL  115 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence            3456678999999985 77653      24667788999999999998422      255567899999999999872  


Q ss_pred             ----cCCCCCCCCCEEEccCCccCCccc-----cCCCCCCcEeeCCCCCCCCCEEEcCCCCCC
Q 015448          101 ----DDVTSVVSLRALILNDNEIVSICK-----LDQMKELNTLGMDSYFFNLNNLNLQGNPVA  154 (406)
Q Consensus       101 ----~~l~~l~~L~~L~Ls~N~i~~l~~-----l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~  154 (406)
                          ..+.....|+.|+|++|....+..     +..  .|      ..-+.|+.|+|+.|.+.
T Consensus       116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~--aL------~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM--AI------EENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH--HH------HHCSSCCEEECCCCCHH
T ss_pred             HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH--HH------HhCCCcCeEeccCCCcc
Confidence                246777889999998764322211     111  01      13457888888877653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.94  E-value=0.0058  Score=60.18  Aligned_cols=152  Identities=18%  Similarity=0.182  Sum_probs=85.7

Q ss_pred             CCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCC-----------------------CCCCCCCCcEEEe
Q 015448           16 CDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLE-----------------------GLKHCVNLKWLSL   70 (406)
Q Consensus        16 ~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~-----------------------~l~~L~~L~~L~L   70 (406)
                      ..+.+|+.+.+..+ ++.+.  ++..+..|+.+.+..+...--.                       .+..+..|+.+.+
T Consensus       182 ~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~  260 (394)
T 4fs7_A          182 SGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISI  260 (394)
T ss_dssp             TTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEE
T ss_pred             cCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEc
Confidence            34567888777655 44443  5666777776666544321111                       2344455555555


Q ss_pred             cCCCCCCCC--CCCCCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC---------
Q 015448           71 VQNKLQSLK--GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD---------  137 (406)
Q Consensus        71 s~N~l~~l~--~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls---------  137 (406)
                      ..+.. .+.  .+..+..|+.+.+..+.+.. ..+..+.+|+.+.+..+ ++.++.  +..+.+|+.+.|.         
T Consensus       261 ~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~~-~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~  337 (394)
T 4fs7_A          261 QNNKL-RIGGSLFYNCSGLKKVIYGSVIVPE-KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYLVEEIGKR  337 (394)
T ss_dssp             CCTTC-EECSCTTTTCTTCCEEEECSSEECT-TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTTCCEECTT
T ss_pred             CCCcc-eeeccccccccccceeccCceeecc-ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCcccEEhHH
Confidence            44322 222  34455555555554433221 13556677777777654 555543  6677777777775         


Q ss_pred             --CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccC
Q 015448          138 --SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNA  175 (406)
Q Consensus       138 --~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~  175 (406)
                        ..|.+|+.+.|..| +..+....   +..|++|+.++.
T Consensus       338 aF~~c~~L~~i~lp~~-l~~I~~~a---F~~C~~L~~i~l  373 (394)
T 4fs7_A          338 SFRGCTSLSNINFPLS-LRKIGANA---FQGCINLKKVEL  373 (394)
T ss_dssp             TTTTCTTCCEECCCTT-CCEECTTT---BTTCTTCCEEEE
T ss_pred             hccCCCCCCEEEECcc-ccEehHHH---hhCCCCCCEEEE
Confidence              56677788877765 66655432   566777776654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.83  E-value=0.00036  Score=63.04  Aligned_cols=126  Identities=7%  Similarity=-0.013  Sum_probs=82.5

Q ss_pred             CCCCCCCcEEEecCC-CCCC-----CC-CCCCCCCCcEEEcCCCCCCCC-----c-CCCCCCCCCEEEccCCccCCcccc
Q 015448           59 LKHCVNLKWLSLVQN-KLQS-----LK-GIEGLSKPTVLNVGKNKLRSM-----D-DVTSVVSLRALILNDNEIVSICKL  125 (406)
Q Consensus        59 l~~L~~L~~L~Ls~N-~l~~-----l~-~l~~l~~L~~L~Ls~N~i~~l-----~-~l~~l~~L~~L~Ls~N~i~~l~~l  125 (406)
                      +.+-+.|++|+|++| .|..     +. .+..-+.|+.|+|++|.|.+.     . .+...++|++|+|+.|.|..-...
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            456688999999985 7763     22 467778999999999999863     1 355678999999999999764321


Q ss_pred             CCCCCCcEeeCCCCCCCCCEEEcCCC---CCCCchh-HHHHHHhcCCCcccccCcCCChhhhhhhhhhh
Q 015448          126 DQMKELNTLGMDSYFFNLNNLNLQGN---PVAEYDK-LAKKVKTLLPNLCIFNARPIDRITKNEKDNIV  190 (406)
Q Consensus       126 ~~L~~L~~L~Ls~~l~~L~~L~Ls~N---~i~~~~~-~~~~~~~~lp~L~~Ld~~~~~~~~~~~~~~~l  190 (406)
                      .-...|      ..-+.|+.|+|++|   .+..... .....+...+.|..|+........+......+
T Consensus       117 ala~aL------~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g~~~~ia~aL  179 (197)
T 1pgv_A          117 RLLRST------LVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEARHRVSEAL  179 (197)
T ss_dssp             HHHHHT------TTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHHHHHHHHHHH
T ss_pred             HHHHHH------hhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCccHHHHHHHHH
Confidence            111111      13446899999865   4443321 22235567788888887765555444333333

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.29  E-value=0.0064  Score=50.78  Aligned_cols=52  Identities=27%  Similarity=0.279  Sum_probs=27.9

Q ss_pred             EEEccCCCCC--CCCCCCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCCCCC
Q 015448           45 RLDLSSNNLT--SLEGLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGKNKL   97 (406)
Q Consensus        45 ~L~Ls~N~l~--~l~~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~i   97 (406)
                      +++.+++.++  .+|.- -..+|++|+|++|.|+.|+  .|..+++|+.|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTA-FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSC-CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCC-CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4455555554  44420 1134566666666666665  255566666666666654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.09  E-value=0.0099  Score=49.63  Aligned_cols=55  Identities=20%  Similarity=0.167  Sum_probs=37.9

Q ss_pred             cEEEecCCCCC--CCC-CCCCCCCCcEEEcCCCCCCCCc--CCCCCCCCCEEEccCCccCCc
Q 015448           66 KWLSLVQNKLQ--SLK-GIEGLSKPTVLNVGKNKLRSMD--DVTSVVSLRALILNDNEIVSI  122 (406)
Q Consensus        66 ~~L~Ls~N~l~--~l~-~l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l  122 (406)
                      ..++.+++.++  .+| ++.  ++|+.|+|++|.|+.++  .|..+++|+.|+|++|.+..-
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd   70 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD   70 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence            36677777777  677 332  35777888888887776  256677778888887776543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	406
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-09
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-08
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	9e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	8e-08
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	1e-05
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	5e-05
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	6e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-07
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.003

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 63.2 bits (153), Expect = 5e-13
 Identities = 31/126 (24%), Positives = 60/126 (47%), Gaps = 10/126 (7%)

Query: 46  LDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK-GIEGLSKPTVLNVGKNKLRSMDDVT 104
           L L+  +LT L  L+  + +  L L  N+L++L   +  L    VL    N L ++D V 
Sbjct: 3   LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62

Query: 105 SVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVK 164
           ++  L+ L+L +N +     +  +              L  LNLQGN + + + + +++ 
Sbjct: 63  NLPRLQELLLCNNRLQQSAAIQPLVSCP---------RLVLLNLQGNSLCQEEGIQERLA 113

Query: 165 TLLPNL 170
            +LP++
Sbjct: 114 EMLPSV 119

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 63.9 bits (154), Expect = 7e-12
 Identities = 26/115 (22%), Positives = 52/115 (45%)

Query: 3   RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHC 62
           +L   QI   +      ++ +L L    L D+S +++  NL  L L  NN++ +  +   
Sbjct: 269 KLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSL 328

Query: 63  VNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDN 117
             L+ L    NK+  +  +  L+    L+ G N++  +  + ++  +  L LND 
Sbjct: 329 TKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 61.9 bits (149), Expect = 3e-11
 Identities = 35/176 (19%), Positives = 63/176 (35%), Gaps = 32/176 (18%)

Query: 8   QILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKW 67
           QI          ++  LSL    L D+  L    NL  LDL++N +++L  L     L  
Sbjct: 208 QISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTE 267

Query: 68  LSLVQNKLQSLKGIEGLSKP----------------------TVLNVGKNKLRSMDDVTS 105
           L L  N++ ++  + GL+                        T L +  N +  +  V+S
Sbjct: 268 LKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSS 327

Query: 106 VVSLRALILNDNEIVSICKLDQMKELNTLGMD----------SYFFNLNNLNLQGN 151
           +  L+ L   +N++  +  L  +  +N L             +    +  L L   
Sbjct: 328 LTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 59.2 bits (142), Expect = 2e-10
 Identities = 13/68 (19%), Positives = 31/68 (45%)

Query: 24 LSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEG 83
            L    ++D    TD + +  L      + S++G+++  NL  ++   N+L  +  ++ 
Sbjct: 27 TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKN 86

Query: 84 LSKPTVLN 91
          L+K   + 
Sbjct: 87 LTKLVDIL 94

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.0 bits (131), Expect = 6e-09
 Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 15/162 (9%)

Query: 23  SLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIE 82
           SL  T+  +SD++ L    NL+ L L+ N L  +  L    NL  L L  N++ +L  + 
Sbjct: 201 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS 260

Query: 83  GLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD----- 137
           GL+K T L +G N++ ++  +  + +L  L LN+N++  I  +  +K L  L +      
Sbjct: 261 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS 320

Query: 138 -----SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFN 174
                S    L  L    N V++   LA      L N+   +
Sbjct: 321 DISPVSSLTKLQRLFFANNKVSDVSSLAN-----LTNINWLS 357

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.8 bits (115), Expect = 5e-07
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 17 DPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWL 68
          D + + +L      +  +  +   NNL +++ S+N LT +  LK+   L  +
Sbjct: 42 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDI 93

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 7e-06
 Identities = 14/75 (18%), Positives = 30/75 (40%)

Query: 38  TDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKL 97
           T      +  L   N+T          +  L   +  ++S+ G+E L+  T +N   N+L
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL 78

Query: 98  RSMDDVTSVVSLRAL 112
             +  + ++  L  +
Sbjct: 79  TDITPLKNLTKLVDI 93

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (129), Expect = 2e-09
 Identities = 27/161 (16%), Positives = 55/161 (34%), Gaps = 8/161 (4%)

Query: 26  LTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGL-KHCVNLKWLSLVQNKLQSLKGIEGL 84
           LT + +   +  T+      LDL    +  +E L         +    N+++ L G   L
Sbjct: 3   LTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLL 62

Query: 85  SKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLN 144
            +   L V  N++  + +              +    I   + + EL  L   +   +L 
Sbjct: 63  RRLKTLLVNNNRICRIGEGLDQA-------LPDLTELILTNNSLVELGDLDPLASLKSLT 115

Query: 145 NLNLQGNPVAEYDKLAKKVKTLLPNLCIFNARPIDRITKNE 185
            L +  NPV         V   +P + + + + +    + E
Sbjct: 116 YLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQE 156

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.6 bits (122), Expect = 3e-08
 Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 2/75 (2%)

Query: 17 DPN--SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNK 74
          DP   +   ++     ++D     D + +  L      +T++EG+++  NL  L L  N+
Sbjct: 15 DPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQ 74

Query: 75 LQSLKGIEGLSKPTV 89
          +  L  ++ L+K T 
Sbjct: 75 ITDLAPLKNLTKITE 89

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.8 bits (107), Expect = 3e-06
 Identities = 12/78 (15%), Positives = 32/78 (41%), Gaps = 1/78 (1%)

Query: 25  SLTH-KALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEG 83
           S+T   A++ +       N  ++    +N+T          +  LS     + +++G++ 
Sbjct: 2   SITQPTAINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQY 61

Query: 84  LSKPTVLNVGKNKLRSMD 101
           L+    L +  N++  + 
Sbjct: 62  LNNLIGLELKDNQITDLA 79

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 5e-06
 Identities = 12/40 (30%), Positives = 22/40 (55%)

Query: 31  LSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSL 70
           +SD+S L    NL  + L +N ++ +  L +  NL  ++L
Sbjct: 185 ISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.3 bits (103), Expect = 9e-06
 Identities = 12/61 (19%), Positives = 27/61 (44%)

Query: 32  SDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLN 91
           SD++ L + + L  L    N ++ +  L    NL  + L  N++  +  +   S   ++ 
Sbjct: 164 SDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVT 223

Query: 92  V 92
           +
Sbjct: 224 L 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 17/93 (18%), Positives = 41/93 (44%)

Query: 24  LSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEG 83
           L L    ++++S L    NL+ L + +  ++ L  L +   L  L    NK+  +  +  
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLAS 193

Query: 84  LSKPTVLNVGKNKLRSMDDVTSVVSLRALILND 116
           L     +++  N++  +  + +  +L  + L +
Sbjct: 194 LPNLIEVHLKNNQISDVSPLANTSNLFIVTLTN 226

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 8e-08
 Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 2/70 (2%)

Query: 6  TQQILKDNKTCDPN--SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCV 63
          TQ    +    D          L    ++D    TD + +  L      + S++G+++  
Sbjct: 3  TQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLN 62

Query: 64 NLKWLSLVQN 73
          NL  ++   N
Sbjct: 63 NLTQINFSNN 72

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.9 bits (102), Expect = 1e-05
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query: 28  HKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWL 68
              ++D+  L +   LERLD+SSN ++ +  L    NL+ L
Sbjct: 159 SNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.6 bits (96), Expect = 5e-05
 Identities = 12/58 (20%), Positives = 22/58 (37%)

Query: 38 TDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKN 95
          T      +  L   N+T          +  L   +  ++S+ G+E L+  T +N   N
Sbjct: 15 TALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNN 72

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 6e-04
 Identities = 39/177 (22%), Positives = 73/177 (41%), Gaps = 15/177 (8%)

Query: 4   LSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCV 63
           L    +       D + + +L      +  +  +   NNL +++ S+N LT +  LK+  
Sbjct: 25  LGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLT 84

Query: 64  NLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSIC 123
            L  + +  N++  +  +  L+  T L +  N++  +D + ++ +L  L L+ N I  I 
Sbjct: 85  KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS 144

Query: 124 KLDQMKELNTLGMDSYFF----------NLNNLNLQGNPVAEYDKLAKKVKTLLPNL 170
            L  +  L  L   S              L  L++  N V++   LAK     L NL
Sbjct: 145 ALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAK-----LTNL 196

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.6 bits (117), Expect = 1e-07
 Identities = 14/62 (22%), Positives = 37/62 (59%)

Query: 24 LSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEG 83
           +L  K+++D     + N+++++  +++++ S++G+++  N+  L L  NKL  +K +  
Sbjct: 29 DNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLAN 88

Query: 84 LS 85
          L 
Sbjct: 89 LK 90

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 1e-05
 Identities = 14/43 (32%), Positives = 20/43 (46%)

Query: 28  HKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSL 70
              +SD+  L     L+ L LS N+++ L  L    NL  L L
Sbjct: 165 DNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 12/74 (16%), Positives = 30/74 (40%)

Query: 32  SDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLN 91
             +     F    + +L   ++T         ++  +    + ++S++GI+ L   T L 
Sbjct: 15  KQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLF 74

Query: 92  VGKNKLRSMDDVTS 105
           +  NKL  +  + +
Sbjct: 75  LNGNKLTDIKPLAN 88

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 4e-04
 Identities = 33/179 (18%), Positives = 62/179 (34%), Gaps = 44/179 (24%)

Query: 4   LSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTS-------- 55
           L  + +       + NSI  +   +  +  V  +    N+ +L L+ N LT         
Sbjct: 31  LKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLK 90

Query: 56  ------------------------------------LEGLKHCVNLKWLSLVQNKLQSLK 79
                                               + GL H   L+ L L  NK+  + 
Sbjct: 91  NLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDIT 150

Query: 80  GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDS 138
            +  L+K   L++  N++  +  +  +  L+ L L+ N I  +  L  +K L+ L + S
Sbjct: 151 VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 209

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.6 bits (119), Expect = 1e-07
 Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 6/80 (7%)

Query: 36  CLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKN 95
                 +LE L++S+N L  L  L     L+ L    N L  +   E       L+V  N
Sbjct: 279 LCDLPPSLEELNVSNNKLIELPAL--PPRLERLIASFNHLAEVP--ELPQNLKQLHVEYN 334

Query: 96  KLRSMDDVTSVVSLRALILN 115
            LR   D+    S+  L +N
Sbjct: 335 PLREFPDIPE--SVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.1 bits (115), Expect = 5e-07
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 15  TCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNK 74
              P S++ L++++  L ++  L     LERL  S N+L  +  L    NLK L +  N 
Sbjct: 280 CDLPPSLEELNVSNNKLIELPAL--PPRLERLIASFNHLAEVPEL--PQNLKQLHVEYNP 335

Query: 75  LQSL 78
           L+  
Sbjct: 336 LREF 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.9 bits (99), Expect = 4e-05
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 14 KTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQN 73
          + C       L L +  LS +  L    +LE L  S N+LT L  L    +LK L +  N
Sbjct: 33 RDCLDRQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPEL--PQSLKSLLVDNN 88

Query: 74 KLQSL 78
           L++L
Sbjct: 89 NLKAL 93

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 4/47 (8%)

Query: 34 VSCLTD--FNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSL 78
          VS L D        L+L++  L+SL  L    +L+ L    N L  L
Sbjct: 29 VSRLRDCLDRQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTEL 73

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (111), Expect = 2e-06
 Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 12/91 (13%)

Query: 20  SIKSLSLTHKALSDVSC---LTDFNNLERLDLSSNNLTS------LEGLKHCVNLKWLSL 70
            I+SL +  + LSD      L      + + L    LT          L+    L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 71  VQNKLQSLKGIEGLSKPTVLNVGKNKLRSMD 101
             N+L    G+  + +   L     K++ + 
Sbjct: 63  RSNELGD-VGVHCVLQ--GLQTPSCKIQKLS 90

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 5e-04
 Identities = 16/106 (15%), Positives = 30/106 (28%), Gaps = 23/106 (21%)

Query: 35  SCLTDFNNLERLDLSSNNLTS------LEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPT 88
                 + L  L L+  +++          L    +L+ L L  N L    GI  L +  
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL-GDAGILQLVE-- 419

Query: 89  VLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICK--LDQMKELN 132
            +      L  +             L D       +  L  +++  
Sbjct: 420 SVRQPGCLLEQLV------------LYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 15/83 (18%)

Query: 19  NSIKSLSLTHKALSDVSC------LTDFNNLERLDLSSNNLTS------LEGLKH-CVNL 65
           + ++ L L    +SD SC      L   ++L  LDLS+N L        +E ++     L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 66  KWLSLVQNKL--QSLKGIEGLSK 86
           + L L       +    ++ L K
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEK 451

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 2e-06
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 4/49 (8%)

Query: 36  CLTDFNNLERLDLSSNNLTSL--EGLKHCVNLKWLSLVQNKLQSLKGIE 82
                +    LD+S   + SL   GL++   L+  S     L+ L  +E
Sbjct: 196 VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPTLE 242

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.5 bits (101), Expect = 2e-05
 Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 5/122 (4%)

Query: 42  NLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQSL--KGIEGLSKPTVLNVGKNKL 97
           +   LDL +N +T ++    K+  NL  L L+ NK+  +       L K   L + KN+L
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 98  RSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYD 157
           + + +     +L+ L +++NEI  + K         + ++     L +  ++        
Sbjct: 92  KELPE-KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 158 KL 159
           KL
Sbjct: 151 KL 152

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.3 bits (90), Expect = 6e-04
 Identities = 23/167 (13%), Positives = 60/167 (35%), Gaps = 14/167 (8%)

Query: 1   MTRLSTQQILKDNKTCDPNSIKSL-SLTHKALSDVSCLT----DFNNLERLDLSSNNLT- 54
           M  +        +   +  + + +  L++  ++D +  T       +L  L L  N +T 
Sbjct: 126 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITK 185

Query: 55  ----SLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSMDDVTSVVSLR 110
               SL+GL +   L       + + +           +       ++    +     ++
Sbjct: 186 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQ 245

Query: 111 ALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYD 157
            + L++N I +I       +    G ++   + + ++L  NPV  ++
Sbjct: 246 VVYLHNNNISAI----GSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 288

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 24/151 (15%), Positives = 55/151 (36%), Gaps = 1/151 (0%)

Query: 35  SCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGK 94
           + L+     + L LS+NN+  +  L    NL+ LSL +N ++ ++ ++ ++         
Sbjct: 42  ATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS 101

Query: 95  NKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVA 154
               +       +    ++   N  ++    +  K      ++      N L        
Sbjct: 102 YNQIASLSGIEKLVNLRVLYMSNNKITNWG-EIDKLAALDKLEDLLLAGNPLYNDYKENN 160

Query: 155 EYDKLAKKVKTLLPNLCIFNARPIDRITKNE 185
              +   +V   LPNL   +  P+D   + +
Sbjct: 161 ATSEYRIEVVKRLPNLKKLDGMPVDVDEREQ 191

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 12/73 (16%), Positives = 28/73 (38%), Gaps = 12/73 (16%)

Query: 20 SIKSLSLTHKALSD------VSCLTDFNNLERLDLSSNNLTSL------EGLKHCVNLKW 67
          SI+  SL   A++        + L + ++++ + LS N + +       E +    +L+ 
Sbjct: 4  SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 68 LSLVQNKLQSLKG 80
                    +K 
Sbjct: 64 AEFSDIFTGRVKD 76

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 1/42 (2%)

Query: 35  SCLTDFNNLERLDLSSNNLT-SLEGLKHCVNLKWLSLVQNKL 75
             LT    L  L++S NNL   +    +       +   NK 
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	406
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.82
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.81
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.8
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.75
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.73
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.71
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.7
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.68
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.64
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.64
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.6
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.58
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.56
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.54
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.49
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.45
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.38
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.36
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.34
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.24
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.24
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.22
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.21
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.18
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.96
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.85
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.84
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.73
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.64
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.58
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.29
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.29
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.08
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.59
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.55
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.75
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.71

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.82  E-value=4.3e-20  Score=166.01  Aligned_cols=153  Identities=22%  Similarity=0.362  Sum_probs=131.7

Q ss_pred             CCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCCCCCCCcEEEcCCC
Q 015448           16 CDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKN   95 (406)
Q Consensus        16 ~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N   95 (406)
                      ..+.+|+.|++++|.|+.++.+..|++|++|+|++|.|+.++++..+++|++|++++|.+..++++..++.|+.|++++|
T Consensus        37 ~~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~  116 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN  116 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCSS
T ss_pred             HHhcCCCEEECCCCCCCCccccccCCCcCcCccccccccCcccccCCccccccccccccccccccccccccccccccccc
Confidence            34678999999999999988888899999999999999998889999999999999999998888889999999999999


Q ss_pred             CCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC----------CCCCCCCEEEcCCCCCCCchhHHHHHHh
Q 015448           96 KLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD----------SYFFNLNNLNLQGNPVAEYDKLAKKVKT  165 (406)
Q Consensus        96 ~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls----------~~l~~L~~L~Ls~N~i~~~~~~~~~~~~  165 (406)
                      .+..++.+..+++|+.|++++|.+..++.+..+++|+.|++.          ..+++|++|+|++|+|+.++.     +.
T Consensus       117 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N~i~~i~~-----l~  191 (199)
T d2omxa2         117 QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISV-----LA  191 (199)
T ss_dssp             CCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-----GG
T ss_pred             ccccccccchhhhhHHhhhhhhhhcccccccccccccccccccccccCCccccCCCCCCEEECCCCCCCCCcc-----cc
Confidence            998888888899999999999999888888888888888776          567888888888888887764     45


Q ss_pred             cCCCcccc
Q 015448          166 LLPNLCIF  173 (406)
Q Consensus       166 ~lp~L~~L  173 (406)
                      .+++|+.|
T Consensus       192 ~L~~L~~L  199 (199)
T d2omxa2         192 KLTNLESL  199 (199)
T ss_dssp             GCTTCSEE
T ss_pred             CCCCCCcC
Confidence            67776643

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=7.6e-21  Score=166.25  Aligned_cols=159  Identities=18%  Similarity=0.278  Sum_probs=106.9

Q ss_pred             CccccccccCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCC
Q 015448            2 TRLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGI   81 (406)
Q Consensus         2 ~~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l   81 (406)
                      ||||.+.|........+..+++|+|++|.|+.++.+                     +..+++|++|+|++|.|+.++++
T Consensus         1 ~rLt~~~i~~~~~~~n~~~lr~L~L~~n~I~~i~~~---------------------~~~l~~L~~L~Ls~N~i~~l~~~   59 (162)
T d1a9na_           1 VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENL---------------------GATLDQFDAIDFSDNEIRKLDGF   59 (162)
T ss_dssp             CCCCHHHHHTSCEEECTTSCEEEECTTSCCCSCCCG---------------------GGGTTCCSEEECCSSCCCEECCC
T ss_pred             CCCCHHHHhhhHhccCcCcCcEEECCCCCCCccCcc---------------------ccccccCCEEECCCCCCCccCCc
Confidence            456666665554444444555555555555554421                     23345555555555555555555


Q ss_pred             CCCCCCcEEEcCCCCCCCCcC--CCCCCCCCEEEccCCccCCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhH
Q 015448           82 EGLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKL  159 (406)
Q Consensus        82 ~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~  159 (406)
                      ..+++|++|++++|.|+.++.  +..+++|++|++++|.|+.++.+..+.         .+++|++|++++|+++..+.+
T Consensus        60 ~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~---------~l~~L~~L~l~~N~i~~~~~~  130 (162)
T d1a9na_          60 PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLA---------SLKSLTYLCILRNPVTNKKHY  130 (162)
T ss_dssp             CCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGG---------GCTTCCEEECCSSGGGGSTTH
T ss_pred             ccCcchhhhhcccccccCCCccccccccccccceeccccccccccccccc---------cccccchhhcCCCccccccch
Confidence            555566666666666665542  345677777777777777766544443         567899999999999999998


Q ss_pred             HHHHHhcCCCcccccCcCCChhhhhhhhhhh
Q 015448          160 AKKVKTLLPNLCIFNARPIDRITKNEKDNIV  190 (406)
Q Consensus       160 ~~~~~~~lp~L~~Ld~~~~~~~~~~~~~~~l  190 (406)
                      +.+++..+|+|++||+.+++..++..+...+
T Consensus       131 r~~~i~~lp~L~~LD~~~i~~~er~~A~~~~  161 (162)
T d1a9na_         131 RLYVIYKVPQVRVLDFQKVKLKERQEAEKMF  161 (162)
T ss_dssp             HHHHHHHCTTCSEETTEECCHHHHHHHHHTT
T ss_pred             HHHHHHHCCCcCeeCCCCCCHHHHHHHHHHh
Confidence            8889999999999999999999998877543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=9.4e-20  Score=165.25  Aligned_cols=154  Identities=27%  Similarity=0.429  Sum_probs=130.4

Q ss_pred             CCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCCCCCCCcEEEcCCCC
Q 015448           17 DPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNK   96 (406)
Q Consensus        17 ~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~   96 (406)
                      .+.+|+.|++++|.|+.++.+..|++|++|+|++|.|+.++++..+++|++|++++|.|+.++.+..+++|+.|++++|.
T Consensus        44 ~L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~  123 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNG  123 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSC
T ss_pred             HhcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCccccccCcccccccccccccccccccccccccccccccccc
Confidence            35678888888888888887888888999999998888888888888899999988888888888888888999998888


Q ss_pred             CCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC----------CCCCCCCEEEcCCCCCCCchhHHHHHHhc
Q 015448           97 LRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD----------SYFFNLNNLNLQGNPVAEYDKLAKKVKTL  166 (406)
Q Consensus        97 i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls----------~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~  166 (406)
                      +..++.+..++.|+.+++++|.++.++.+..+++|++|+++          ..+++|+.|+|++|.|+.++.     +..
T Consensus       124 ~~~~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls~N~i~~l~~-----l~~  198 (210)
T d1h6ta2         124 ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA-----LAG  198 (210)
T ss_dssp             CCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG-----GTT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCEEECCCCCCCCChh-----hcC
Confidence            88888888888888888888888887777778888888877          577899999999999988764     567


Q ss_pred             CCCcccccC
Q 015448          167 LPNLCIFNA  175 (406)
Q Consensus       167 lp~L~~Ld~  175 (406)
                      +++|++|+.
T Consensus       199 l~~L~~L~L  207 (210)
T d1h6ta2         199 LKNLDVLEL  207 (210)
T ss_dssp             CTTCSEEEE
T ss_pred             CCCCCEEEc
Confidence            888888764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=8.2e-18  Score=157.37  Aligned_cols=174  Identities=26%  Similarity=0.214  Sum_probs=144.3

Q ss_pred             ccccccccCCCCCCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCC-
Q 015448            3 RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK-   79 (406)
Q Consensus         3 ~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~-   79 (406)
                      +.+.+.+..+ |...+++|++|+|++|.|+.++  .|..+++|++|+|++|.|+.++.+..+++|++|+|++|.++.++ 
T Consensus        16 ~C~~~~L~~i-P~~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~~~~   94 (266)
T d1p9ag_          16 NCDKRNLTAL-PPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL   94 (266)
T ss_dssp             ECTTSCCSSC-CSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCC
T ss_pred             EccCCCCCee-CcCcCcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccccccccccccccccccccccccc
Confidence            3444455554 3344678999999999999986  68999999999999999999988889999999999999999887 


Q ss_pred             CCCCCCCCcEEEcCCCCCCCCc--CCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC------------CCCCCC
Q 015448           80 GIEGLSKPTVLNVGKNKLRSMD--DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD------------SYFFNL  143 (406)
Q Consensus        80 ~l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls------------~~l~~L  143 (406)
                      .+..+++|+.|++++|.+..++  .+..+.+|..|++++|.++.++.  +..++.|+.|+++            ..+++|
T Consensus        95 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L  174 (266)
T d1p9ag_          95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL  174 (266)
T ss_dssp             CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTC
T ss_pred             ccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCcccccccccc
Confidence            5888999999999999998875  46788999999999999998874  6778899999988            568899


Q ss_pred             CEEEcCCCCCCCchhHHHHHHhcCCCccccc--CcCCChh
Q 015448          144 NNLNLQGNPVAEYDKLAKKVKTLLPNLCIFN--ARPIDRI  181 (406)
Q Consensus       144 ~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld--~~~~~~~  181 (406)
                      ++|+|++|.|+.++..    +..+++|+.|+  ++|+.+.
T Consensus       175 ~~L~Ls~N~L~~lp~~----~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         175 DTLLLQENSLYTIPKG----FFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             CEEECCSSCCCCCCTT----TTTTCCCSEEECCSCCBCCS
T ss_pred             ceeecccCCCcccChh----HCCCCCCCEEEecCCCCCCC
Confidence            9999999999988752    34577787554  5665443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=2.8e-18  Score=155.32  Aligned_cols=148  Identities=27%  Similarity=0.353  Sum_probs=132.7

Q ss_pred             ccccccccCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCC
Q 015448            3 RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIE   82 (406)
Q Consensus         3 ~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l~   82 (406)
                      .++.+.|..+.....+++|++|+|++|.|++++.+..+++|++|++++|.|+.++.+..+++|+.|++++|.+..++.+.
T Consensus        52 ~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~~~~~~~l~  131 (210)
T d1h6ta2          52 IANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLV  131 (210)
T ss_dssp             ECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCGGGG
T ss_pred             ECcCCCCCCchhHhhCCCCCEEeCCCccccCccccccCcccccccccccccccccccccccccccccccccccccccccc
Confidence            45667777777777799999999999999999988999999999999999999999999999999999999999888888


Q ss_pred             CCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC----------CCCCCCCEEEcCC
Q 015448           83 GLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD----------SYFFNLNNLNLQG  150 (406)
Q Consensus        83 ~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls----------~~l~~L~~L~Ls~  150 (406)
                      .++.|+.+++++|.++.++.+..+++|+++++++|.++.++.+..+++|+.|+|+          ..+++|++|+|++
T Consensus       132 ~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         132 HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             GCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccCCCCCCEEECCCCCCCCChhhcCCCCCCEEEccC
Confidence            8999999999999999888788889999999999999998888899999999998          5677888888763

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=1e-17  Score=152.76  Aligned_cols=167  Identities=23%  Similarity=0.361  Sum_probs=122.3

Q ss_pred             cccccCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCCCCC
Q 015448            6 TQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLS   85 (406)
Q Consensus         6 ~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l~~l~   85 (406)
                      .+.+.+......+.+|+.|++.+|.|+.++.+..|++|++|+|++|.|+.+.++..+++|++|++++|.++.++++..++
T Consensus        28 ~~~~~d~~~~~~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~~l~~l~  107 (227)
T d1h6ua2          28 KSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQ  107 (227)
T ss_dssp             CSSTTSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCT
T ss_pred             CCCcCCcCCHHHcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeeccccccccccccccccccccccccccccccc
Confidence            34444444445567888888888888888777888888888888888888877888888888888888888888777888


Q ss_pred             CCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC----------CCCCCCCEEEcCCCCCCC
Q 015448           86 KPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD----------SYFFNLNNLNLQGNPVAE  155 (406)
Q Consensus        86 ~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls----------~~l~~L~~L~Ls~N~i~~  155 (406)
                      +|+.|++++|.+..++.+...+.+..+.++.+.+.....+..+++|++|+++          ..+++|+.|+|++|.+..
T Consensus       108 ~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~  187 (227)
T d1h6ua2         108 SIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD  187 (227)
T ss_dssp             TCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred             cccccccccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccchhhcccccceecccCCCccCC
Confidence            8888888888777766666666777777777776666666666667777666          466777777777777776


Q ss_pred             chhHHHHHHhcCCCcccccCcC
Q 015448          156 YDKLAKKVKTLLPNLCIFNARP  177 (406)
Q Consensus       156 ~~~~~~~~~~~lp~L~~Ld~~~  177 (406)
                      ++.     +..+++|+.|+...
T Consensus       188 l~~-----l~~l~~L~~L~Ls~  204 (227)
T d1h6ua2         188 ISP-----LASLPNLIEVHLKN  204 (227)
T ss_dssp             CGG-----GGGCTTCCEEECTT
T ss_pred             Chh-----hcCCCCCCEEECcC
Confidence            654     35567777666543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=1.3e-17  Score=149.59  Aligned_cols=135  Identities=17%  Similarity=0.344  Sum_probs=125.7

Q ss_pred             ccccccccCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCC
Q 015448            3 RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIE   82 (406)
Q Consensus         3 ~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l~   82 (406)
                      +++.+.|..+.....+++|++|+|++|.|++++.+..+++|++|++++|.+..++++.++++|+.|++++|.+..++++.
T Consensus        46 ~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  125 (199)
T d2omxa2          46 QADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK  125 (199)
T ss_dssp             ECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGT
T ss_pred             ECCCCCCCCccccccCCCcCcCccccccccCcccccCCcccccccccccccccccccccccccccccccccccccccccc
Confidence            45667777777777899999999999999999889999999999999999999999999999999999999999888888


Q ss_pred             CCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC
Q 015448           83 GLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD  137 (406)
Q Consensus        83 ~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls  137 (406)
                      .+++|+.|++++|.+..++.+..+++|+.|++++|.++.++.+..+++|++|+++
T Consensus       126 ~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls  180 (199)
T d2omxa2         126 NLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDIS  180 (199)
T ss_dssp             TCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred             hhhhhHHhhhhhhhhcccccccccccccccccccccccCCccccCCCCCCEEECC
Confidence            9999999999999999998899999999999999999999999999999999997

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=2.8e-18  Score=143.09  Aligned_cols=121  Identities=26%  Similarity=0.407  Sum_probs=100.5

Q ss_pred             cEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCC-CCCCCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCc
Q 015448           44 ERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLK-GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSI  122 (406)
Q Consensus        44 ~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l  122 (406)
                      ++|+|++|.|+.++.+..+++|++|+|++|.|+.+| .+..+++|++|++++|.|+.++++..+++|++|++++|.|+.+
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i~~~   80 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQS   80 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSS
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCccccccccCeEECCCCccCCC
Confidence            578888888888888888888888888888888887 5888888999999999888888888888999999999998887


Q ss_pred             cccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccc
Q 015448          123 CKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIF  173 (406)
Q Consensus       123 ~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~L  173 (406)
                      +.+..+.         .+++|+.|+|++|+++..+.++..+...+|+|..|
T Consensus        81 ~~~~~l~---------~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          81 AAIQPLV---------SCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             STTGGGG---------GCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCchhhc---------CCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            7654443         56788999999999988877777778888888754

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=1.9e-17  Score=160.55  Aligned_cols=166  Identities=23%  Similarity=0.332  Sum_probs=96.6

Q ss_pred             ccccccCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCCCC
Q 015448            5 STQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGL   84 (406)
Q Consensus         5 s~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l~~l   84 (406)
                      +.+++....+...+.+|+.|++++|.++.++.+..+++|+.|++++|.++.++++..+++|+.|++++|.+..++.+..+
T Consensus       205 ~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~  284 (384)
T d2omza2         205 TNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGL  284 (384)
T ss_dssp             CSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTC
T ss_pred             cCCccCCCCcccccCCCCEEECCCCCCCCcchhhcccccchhccccCccCCCCcccccccCCEeeccCcccCCCCccccc
Confidence            34444444444445566666666666666655556666666666666666665566666666666666666655555556


Q ss_pred             CCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC----------CCCCCCCEEEcCCCCCC
Q 015448           85 SKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD----------SYFFNLNNLNLQGNPVA  154 (406)
Q Consensus        85 ~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls----------~~l~~L~~L~Ls~N~i~  154 (406)
                      +.++.+.++.|.+..++.+..+++|++|++++|.|+.++.+..+++|+.|+|+          ..+++|++|+|++|+|+
T Consensus       285 ~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N~l~  364 (384)
T d2omza2         285 TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQIS  364 (384)
T ss_dssp             TTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             cccccccccccccccccccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCCChhHcCCCCCCEEECCCCcCC
Confidence            66666666666666555555566666666666666666555555555555555          34455555555555555


Q ss_pred             CchhHHHHHHhcCCCcccccC
Q 015448          155 EYDKLAKKVKTLLPNLCIFNA  175 (406)
Q Consensus       155 ~~~~~~~~~~~~lp~L~~Ld~  175 (406)
                      ++++     +..+++|+.|+.
T Consensus       365 ~l~~-----l~~l~~L~~L~L  380 (384)
T d2omza2         365 DLTP-----LANLTRITQLGL  380 (384)
T ss_dssp             BCGG-----GTTCTTCSEEEC
T ss_pred             CChh-----hccCCCCCEeeC
Confidence            5543     334555555443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=1.7e-17  Score=151.26  Aligned_cols=169  Identities=20%  Similarity=0.321  Sum_probs=153.5

Q ss_pred             ccccccccCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCC
Q 015448            3 RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIE   82 (406)
Q Consensus         3 ~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l~   82 (406)
                      .+..+.|..+.....+++|++|+|++|.|+.+..+..+++|++|++++|.++.++.+..+++|+.|.+++|.+..++.+.
T Consensus        47 ~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~~~~~~~~~~~  126 (227)
T d1h6ua2          47 SAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLA  126 (227)
T ss_dssp             ECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGGGT
T ss_pred             ECCCCCCCcchhHhcCCCCcEeecCCceeeccccccccccccccccccccccccccccccccccccccccccccccchhc
Confidence            35667777777778899999999999999999889999999999999999999999999999999999999998888888


Q ss_pred             CCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC----------CCCCCCCEEEcCCCC
Q 015448           83 GLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD----------SYFFNLNNLNLQGNP  152 (406)
Q Consensus        83 ~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls----------~~l~~L~~L~Ls~N~  152 (406)
                      ..+.+..+.++++.+.....+..+++|++|++++|.+..+..+..+++|+.|+|+          ..+++|++|+|++|+
T Consensus       127 ~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~l~~l~~L~~L~Ls~N~  206 (227)
T d1h6ua2         127 GLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQ  206 (227)
T ss_dssp             TCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSC
T ss_pred             cccchhhhhchhhhhchhhhhccccccccccccccccccchhhcccccceecccCCCccCCChhhcCCCCCCEEECcCCc
Confidence            8999999999999998887888899999999999999998889999999999998          678999999999999


Q ss_pred             CCCchhHHHHHHhcCCCcccccCc
Q 015448          153 VAEYDKLAKKVKTLLPNLCIFNAR  176 (406)
Q Consensus       153 i~~~~~~~~~~~~~lp~L~~Ld~~  176 (406)
                      |+.+++     +..+++|+.|+.+
T Consensus       207 lt~i~~-----l~~l~~L~~L~ls  225 (227)
T d1h6ua2         207 ISDVSP-----LANTSNLFIVTLT  225 (227)
T ss_dssp             CCBCGG-----GTTCTTCCEEEEE
T ss_pred             CCCCcc-----cccCCCCCEEEee
Confidence            999876     5678999988753

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=5.6e-17  Score=151.59  Aligned_cols=158  Identities=25%  Similarity=0.265  Sum_probs=137.5

Q ss_pred             CccccccccCCC--CCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCC-CCCCCCCcEEEecCCCCCCC
Q 015448            2 TRLSTQQILKDN--KTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEG-LKHCVNLKWLSLVQNKLQSL   78 (406)
Q Consensus         2 ~~Ls~n~i~~~~--~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~-l~~L~~L~~L~Ls~N~l~~l   78 (406)
                      ++|+.|.|..+.  .+..+++|++|+|++|.|+.++.+..+++|++|+|++|.++.++. +..+++|++|++++|.+..+
T Consensus        36 L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~  115 (266)
T d1p9ag_          36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL  115 (266)
T ss_dssp             EECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCC
T ss_pred             EECcCCcCCCcCHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccee
Confidence            467888888774  356789999999999999999888899999999999999998764 78899999999999999987


Q ss_pred             C--CCCCCCCCcEEEcCCCCCCCCcC--CCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC-----------CCCC
Q 015448           79 K--GIEGLSKPTVLNVGKNKLRSMDD--VTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD-----------SYFF  141 (406)
Q Consensus        79 ~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls-----------~~l~  141 (406)
                      +  .+..+.+|..|++++|.++.++.  +..+++|+.|++++|.|+.++.  +..+++|++|+|+           ..++
T Consensus       116 ~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~  195 (266)
T d1p9ag_         116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSH  195 (266)
T ss_dssp             CSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             eccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccChhHCCCC
Confidence            7  47888999999999999999863  5678999999999999998874  7889999999998           4577


Q ss_pred             CCCEEEcCCCCCCCchhH
Q 015448          142 NLNNLNLQGNPVAEYDKL  159 (406)
Q Consensus       142 ~L~~L~Ls~N~i~~~~~~  159 (406)
                      +|+.|+|++|++.+.+.+
T Consensus       196 ~L~~L~L~~Np~~CdC~~  213 (266)
T d1p9ag_         196 LLPFAFLHGNPWLCNCEI  213 (266)
T ss_dssp             CCSEEECCSCCBCCSGGG
T ss_pred             CCCEEEecCCCCCCCcch
Confidence            899999999999887543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5.5e-18  Score=147.80  Aligned_cols=101  Identities=16%  Similarity=0.204  Sum_probs=53.9

Q ss_pred             CccccccccCCCCC-CCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCC
Q 015448            2 TRLSTQQILKDNKT-CDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKG   80 (406)
Q Consensus         2 ~~Ls~n~i~~~~~~-~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~   80 (406)
                      ++|+.|+|..+... ..+++|+.|+|++|.|+.++.+..+++|++|+|++|.|+.++.                     +
T Consensus        23 L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~---------------------~   81 (162)
T d1a9na_          23 LDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGE---------------------G   81 (162)
T ss_dssp             EECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECS---------------------C
T ss_pred             EECCCCCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCc---------------------c
Confidence            35666777666443 3355566666666655555545555555555555555544432                     1


Q ss_pred             -CCCCCCCcEEEcCCCCCCCCc---CCCCCCCCCEEEccCCccCCcc
Q 015448           81 -IEGLSKPTVLNVGKNKLRSMD---DVTSVVSLRALILNDNEIVSIC  123 (406)
Q Consensus        81 -l~~l~~L~~L~Ls~N~i~~l~---~l~~l~~L~~L~Ls~N~i~~l~  123 (406)
                       +..+++|+.|+|++|.|+.++   .+..+++|++|++++|.++..+
T Consensus        82 ~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~  128 (162)
T d1a9na_          82 LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK  128 (162)
T ss_dssp             HHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred             ccccccccccceeccccccccccccccccccccchhhcCCCcccccc
Confidence             233445555555555554443   2445566666666666665554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.68  E-value=1e-19  Score=164.00  Aligned_cols=163  Identities=23%  Similarity=0.371  Sum_probs=136.1

Q ss_pred             CCCccEEEeeCC--CCCCCC-CCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCC-CCCCCCcEEEcC
Q 015448           18 PNSIKSLSLTHK--ALSDVS-CLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGI-EGLSKPTVLNVG   93 (406)
Q Consensus        18 ~~~L~~L~Ls~n--~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l-~~l~~L~~L~Ls   93 (406)
                      ...++.+.+.++  .+..++ .+..+++|++|+|++|.|+.+++|..|++|++|+|++|.|+.++++ ..+++|++|+++
T Consensus        22 ~~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~  101 (198)
T d1m9la_          22 ATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS  101 (198)
T ss_dssp             CTTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECS
T ss_pred             ccccceeeeecccCchhhhhhHHhcccccceeECcccCCCCcccccCCccccChhhcccccccccccccccccccccccc
Confidence            455666777664  355554 6788999999999999999999899999999999999999999864 345689999999


Q ss_pred             CCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCc-------hhHHHHHHhc
Q 015448           94 KNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEY-------DKLAKKVKTL  166 (406)
Q Consensus        94 ~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~-------~~~~~~~~~~  166 (406)
                      +|.|+.++.+..+++|++|+|++|.|+.++.+..+.         .+++|+.|+|++|++...       ..|+..++..
T Consensus       102 ~N~i~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~l~---------~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~  172 (198)
T d1m9la_         102 YNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLA---------ALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR  172 (198)
T ss_dssp             EEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHT---------TTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccchhcccccccccc---------CCCccceeecCCCccccCcccccchhhHHHHHHHH
Confidence            999999988888999999999999999887544332         567999999999998543       3466677889


Q ss_pred             CCCcccccCcCCChhhhhhhhhh
Q 015448          167 LPNLCIFNARPIDRITKNEKDNI  189 (406)
Q Consensus       167 lp~L~~Ld~~~~~~~~~~~~~~~  189 (406)
                      +|+|+.||+.+++..+|..+..+
T Consensus       173 lp~L~~LD~~~I~~~er~~A~~~  195 (198)
T d1m9la_         173 LPNLKKLDGMPVDVDEREQANVA  195 (198)
T ss_dssp             CSSCCEESSGGGTTTTTTHHHHH
T ss_pred             CCCcCEeCCccCCHHHHHHHHHh
Confidence            99999999999999999887754

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=4.4e-16  Score=150.72  Aligned_cols=149  Identities=21%  Similarity=0.361  Sum_probs=132.1

Q ss_pred             ccccccccCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCC
Q 015448            3 RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIE   82 (406)
Q Consensus         3 ~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l~   82 (406)
                      .++.+++........+++|+.|++++|.+++++.+..+++|++|++++|.++.++++..++.++.+.++.|.++.++.+.
T Consensus       225 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~  304 (384)
T d2omza2         225 SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS  304 (384)
T ss_dssp             ECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGG
T ss_pred             ECCCCCCCCcchhhcccccchhccccCccCCCCcccccccCCEeeccCcccCCCCccccccccccccccccccccccccc
Confidence            45666776666666789999999999999999888999999999999999999888888999999999999998888888


Q ss_pred             CCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC----------CCCCCCCEEEcCCC
Q 015448           83 GLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD----------SYFFNLNNLNLQGN  151 (406)
Q Consensus        83 ~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls----------~~l~~L~~L~Ls~N  151 (406)
                      .+++++.|++++|.|+.++.+..+++|+.|+|++|.|+.++.+..+++|++|+|+          ..+++|+.|+|++|
T Consensus       305 ~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N~l~~l~~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         305 NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ  383 (384)
T ss_dssp             GCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCCE
T ss_pred             hhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCCChhHcCCCCCCEEECCCCcCCCChhhccCCCCCEeeCCCC
Confidence            8899999999999999988888899999999999999998888889999999988          67889999999987

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=2.1e-16  Score=131.52  Aligned_cols=103  Identities=27%  Similarity=0.332  Sum_probs=94.8

Q ss_pred             cEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCC-CCCCCCCCcEEEecCCCCCCCCCCCCCCCCcEEEcCCCCCCCC
Q 015448           22 KSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLE-GLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLRSM  100 (406)
Q Consensus        22 ~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~-~l~~L~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~i~~l  100 (406)
                      ++|+|++|.|+.++.+..+++|++|+|++|.|+.+| .+..+++|++|++++|.|+.++++..+++|++|++++|.|+.+
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i~~~   80 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQS   80 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSS
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCccccccccCeEECCCCccCCC
Confidence            579999999999998999999999999999999997 4889999999999999999999999999999999999999987


Q ss_pred             cC---CCCCCCCCEEEccCCccCCccc
Q 015448          101 DD---VTSVVSLRALILNDNEIVSICK  124 (406)
Q Consensus       101 ~~---l~~l~~L~~L~Ls~N~i~~l~~  124 (406)
                      +.   +..+++|++|++++|+|+..+.
T Consensus        81 ~~~~~l~~~~~L~~L~l~~N~i~~~~~  107 (124)
T d1dcea3          81 AAIQPLVSCPRLVLLNLQGNSLCQEEG  107 (124)
T ss_dssp             STTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             CCchhhcCCCCCCEEECCCCcCCcCcc
Confidence            63   6778999999999999987654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.3e-14  Score=136.28  Aligned_cols=162  Identities=23%  Similarity=0.234  Sum_probs=130.6

Q ss_pred             CCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCC-------------------------C--CCCCCCCC
Q 015448           15 TCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSL-------------------------E--GLKHCVNL   65 (406)
Q Consensus        15 ~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l-------------------------~--~l~~L~~L   65 (406)
                      ...++++++|+|++|.|+.++  .|..+++|++|++++|.|..+                         +  .|.++++|
T Consensus        28 ~~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L  107 (284)
T d1ozna_          28 VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL  107 (284)
T ss_dssp             TTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred             CCCCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccC
Confidence            345677888888888888876  578888888888888776422                         1  25678899


Q ss_pred             cEEEecCCCCCCCC--CCCCCCCCcEEEcCCCCCCCCc--CCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC--
Q 015448           66 KWLSLVQNKLQSLK--GIEGLSKPTVLNVGKNKLRSMD--DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD--  137 (406)
Q Consensus        66 ~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls--  137 (406)
                      ++|++++|.+..++  .+..+.+|+.+++++|.|+.++  .+..+++|++|+|++|.|+.++.  +..+++|+.|+++  
T Consensus       108 ~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N  187 (284)
T d1ozna_         108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN  187 (284)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhc
Confidence            99999999988776  4777889999999999999886  37788899999999999988864  7888999999888  


Q ss_pred             ----------CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCccccc--CcCCC
Q 015448          138 ----------SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFN--ARPID  179 (406)
Q Consensus       138 ----------~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld--~~~~~  179 (406)
                                ..+++|++|++++|.+..++..   .+..+++|+.|+  ++++.
T Consensus       188 ~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~---~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTE---ALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCSCCCHH---HHTTCTTCCEEECCSSCEE
T ss_pred             cccccChhHhhhhhhccccccccccccccccc---ccccccccCEEEecCCCCC
Confidence                      6778999999999999988753   467889999776  44444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.58  E-value=1.3e-15  Score=135.50  Aligned_cols=124  Identities=24%  Similarity=0.329  Sum_probs=91.1

Q ss_pred             ccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCC-C--CCCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEEEcCC
Q 015448           21 IKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSL-E--GLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVLNVGK   94 (406)
Q Consensus        21 L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l-~--~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~   94 (406)
                      .++++++++.++.+| .+  .+++++|+|++|.|+.+ +  .|..+++|++|+|++|.+..++  .+..+++|++|+|++
T Consensus        10 ~~~v~Cs~~~L~~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEEeCCCcCccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            356788888888877 33  25788888888888653 2  3677888888888888888766  477788888888888


Q ss_pred             CCCCCCc--CCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchh
Q 015448           95 NKLRSMD--DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDK  158 (406)
Q Consensus        95 N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~  158 (406)
                      |+|+.++  .|.++++|++|+|++|.|+.++.  |.            .+++|++|+|++|++.+...
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~------------~l~~L~~l~L~~N~~~~~~~  143 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE------------HLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSST------------TCTTCCEEECTTCCBCCSGG
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhc------------CCcccccccccccccccccc
Confidence            8888875  36778888888888888887764  33            34577778888888766543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.2e-14  Score=133.48  Aligned_cols=150  Identities=21%  Similarity=0.279  Sum_probs=110.8

Q ss_pred             cEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCCCC-------------------
Q 015448           22 KSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSLK-------------------   79 (406)
Q Consensus        22 ~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~l~-------------------   79 (406)
                      ..+++++++++.+| .+  ..++++|+|++|.|+.++.  |.++++|++|++++|.|..++                   
T Consensus        14 ~~v~c~~~~L~~iP~~i--p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             eEEEcCCCCCCccCCCC--CCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence            45688888899887 33  3579999999999999874  899999999999999875332                   


Q ss_pred             --------CCCCCCCCcEEEcCCCCCCCCc--CCCCCCCCCEEEccCCccCCccc--cCCCCCCcEeeCC----------
Q 015448           80 --------GIEGLSKPTVLNVGKNKLRSMD--DVTSVVSLRALILNDNEIVSICK--LDQMKELNTLGMD----------  137 (406)
Q Consensus        80 --------~l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~--l~~L~~L~~L~Ls----------  137 (406)
                              .+..+++|++|++++|.+..++  .+..+.+|+.+++++|.|+.++.  +..+++|+.|+|+          
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~  171 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER  171 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             ccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchh
Confidence                    2455677788888887776654  35566778888888888877753  6667777777777          


Q ss_pred             --CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCc
Q 015448          138 --SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNAR  176 (406)
Q Consensus       138 --~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~  176 (406)
                        ..+++|+.|++++|.+..+.+.   .+..+++|+.|+..
T Consensus       172 ~f~~l~~L~~l~l~~N~l~~i~~~---~f~~l~~L~~L~l~  209 (284)
T d1ozna_         172 AFRGLHSLDRLLLHQNRVAHVHPH---AFRDLGRLMTLYLF  209 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTT---TTTTCTTCCEEECC
T ss_pred             hhccccccchhhhhhccccccChh---Hhhhhhhccccccc
Confidence              5667778888888877766432   25667777766644

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.54  E-value=2.6e-14  Score=126.91  Aligned_cols=122  Identities=22%  Similarity=0.290  Sum_probs=104.2

Q ss_pred             CccccccccCCCCCCCCCCccEEEeeCCCCCC-CC--CCCCCCCCcEEEccCCCCCCCC--CCCCCCCCcEEEecCCCCC
Q 015448            2 TRLSTQQILKDNKTCDPNSIKSLSLTHKALSD-VS--CLTDFNNLERLDLSSNNLTSLE--GLKHCVNLKWLSLVQNKLQ   76 (406)
Q Consensus         2 ~~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~-i~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~L~~L~~L~Ls~N~l~   76 (406)
                      ++.+.+.+..+. ..-++++++|+|++|.|+. ++  .|..+++|++|+|++|.+..++  .+..+++|++|+|++|.|+
T Consensus        13 v~Cs~~~L~~iP-~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~   91 (192)
T d1w8aa_          13 VDCTGRGLKEIP-RDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK   91 (192)
T ss_dssp             EECTTSCCSSCC-SCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCC
T ss_pred             EEEeCCCcCccC-CCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccccc
Confidence            345666666553 3446899999999999986 43  6789999999999999999885  4888999999999999999


Q ss_pred             CCC--CCCCCCCCcEEEcCCCCCCCCc--CCCCCCCCCEEEccCCccCCccc
Q 015448           77 SLK--GIEGLSKPTVLNVGKNKLRSMD--DVTSVVSLRALILNDNEIVSICK  124 (406)
Q Consensus        77 ~l~--~l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~  124 (406)
                      .++  .|.++++|++|+|++|.|+.++  .|..+++|++|+|++|.+.....
T Consensus        92 ~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~  143 (192)
T d1w8aa_          92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             ccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccc
Confidence            988  4899999999999999999986  37899999999999999887654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.49  E-value=2.1e-13  Score=128.63  Aligned_cols=154  Identities=21%  Similarity=0.267  Sum_probs=100.2

Q ss_pred             CCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCCCCCCCCCCCCcEEE
Q 015448           16 CDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLN   91 (406)
Q Consensus        16 ~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~   91 (406)
                      .-+++|++|+|++|.|+.++  .|..+++|++|++++|.+..+++  |..+++|++|++++|+|+.+|.. ....|..|.
T Consensus        28 ~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~-~~~~l~~L~  106 (305)
T d1xkua_          28 DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK-MPKTLQELR  106 (305)
T ss_dssp             SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS-CCTTCCEEE
T ss_pred             CCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccc-hhhhhhhhh
Confidence            44688999999999999986  68899999999999999998853  88899999999999988877631 223455555


Q ss_pred             cCCCCCCCCc----------------------------CCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC------
Q 015448           92 VGKNKLRSMD----------------------------DVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD------  137 (406)
Q Consensus        92 Ls~N~i~~l~----------------------------~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls------  137 (406)
                      +.+|.+..++                            .+..+++|+.+++++|.++.++. ..+++|+.|+++      
T Consensus       107 ~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~L~~L~l~~n~~~~  185 (305)
T d1xkua_         107 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ-GLPPSLTELHLDGNKITK  185 (305)
T ss_dssp             CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS-SCCTTCSEEECTTSCCCE
T ss_pred             ccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCc-ccCCccCEEECCCCcCCC
Confidence            5555443320                            12344566777777776666543 224556666655      


Q ss_pred             ------CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCccccc
Q 015448          138 ------SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFN  174 (406)
Q Consensus       138 ------~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld  174 (406)
                            ..++.++.|++++|.+..++..   .+..+++|+.|+
T Consensus       186 ~~~~~~~~~~~l~~L~~s~n~l~~~~~~---~~~~l~~L~~L~  225 (305)
T d1xkua_         186 VDAASLKGLNNLAKLGLSFNSISAVDNG---SLANTPHLRELH  225 (305)
T ss_dssp             ECTGGGTTCTTCCEEECCSSCCCEECTT---TGGGSTTCCEEE
T ss_pred             CChhHhhccccccccccccccccccccc---cccccccceeee
Confidence                  3444555555555555554321   234455555443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.45  E-value=3.5e-13  Score=127.12  Aligned_cols=169  Identities=20%  Similarity=0.289  Sum_probs=121.7

Q ss_pred             CccccccccCCCC--CCCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCC
Q 015448            2 TRLSTQQILKDNK--TCDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQS   77 (406)
Q Consensus         2 ~~Ls~n~i~~~~~--~~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~   77 (406)
                      ++|+.|+|..+.+  +..+++|++|++++|.+..++  .|..+++|++|++++|.|+.++.. ....|..|.+..|.+..
T Consensus        36 L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~-~~~~l~~L~~~~n~l~~  114 (305)
T d1xkua_          36 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK-MPKTLQELRVHENEITK  114 (305)
T ss_dssp             EECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS-CCTTCCEEECCSSCCCB
T ss_pred             EECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccc-hhhhhhhhhccccchhh
Confidence            4678888888864  456899999999999999985  689999999999999999887642 23456666666665543


Q ss_pred             CC----------------------------CCCCCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCcc--ccCC
Q 015448           78 LK----------------------------GIEGLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSIC--KLDQ  127 (406)
Q Consensus        78 l~----------------------------~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~--~l~~  127 (406)
                      ++                            .+..+++|+.+++++|.+..++. ..+++|+.|++++|.++...  .+..
T Consensus       115 l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~L~~L~l~~n~~~~~~~~~~~~  193 (305)
T d1xkua_         115 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ-GLPPSLTELHLDGNKITKVDAASLKG  193 (305)
T ss_dssp             BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS-SCCTTCSEEECTTSCCCEECTGGGTT
T ss_pred             hhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCc-ccCCccCEEECCCCcCCCCChhHhhc
Confidence            21                            13445677888888888777653 23567788888877776554  2666


Q ss_pred             CCCCcEeeCC------------CCCCCCCEEEcCCCCCCCchhHHHHHHhcCCCcccccCc
Q 015448          128 MKELNTLGMD------------SYFFNLNNLNLQGNPVAEYDKLAKKVKTLLPNLCIFNAR  176 (406)
Q Consensus       128 L~~L~~L~Ls------------~~l~~L~~L~Ls~N~i~~~~~~~~~~~~~lp~L~~Ld~~  176 (406)
                      ++.++.|+++            ..+++|+.|+|++|.|+.++.    .+..+++|+.|+..
T Consensus       194 ~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~----~l~~l~~L~~L~Ls  250 (305)
T d1xkua_         194 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG----GLADHKYIQVVYLH  250 (305)
T ss_dssp             CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT----TTTTCSSCCEEECC
T ss_pred             cccccccccccccccccccccccccccceeeeccccccccccc----ccccccCCCEEECC
Confidence            7777777776            456778888888888877753    24567777766654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.38  E-value=3.8e-13  Score=127.47  Aligned_cols=101  Identities=18%  Similarity=0.334  Sum_probs=69.2

Q ss_pred             CccEEEeeCCCCCC---CC-CCCCCCCCcEEEccC-CCCC-CCC-CCCCCCCCcEEEecCCCCCCCC--CCCCCCCCcEE
Q 015448           20 SIKSLSLTHKALSD---VS-CLTDFNNLERLDLSS-NNLT-SLE-GLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTVL   90 (406)
Q Consensus        20 ~L~~L~Ls~n~l~~---i~-~l~~l~~L~~L~Ls~-N~l~-~l~-~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L   90 (406)
                      +|+.|+|++|.++.   +| .+..+++|++|+|++ |.++ .+| .|.+|++|++|+|++|.|..++  .+..+..|+.|
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            57788888888775   34 677788888888875 6665 455 3777888888888888777554  35666667777


Q ss_pred             EcCCCCCCC-Cc-CCCCCCCCCEEEccCCccC
Q 015448           91 NVGKNKLRS-MD-DVTSVVSLRALILNDNEIV  120 (406)
Q Consensus        91 ~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~N~i~  120 (406)
                      ++++|.+.. +| .+..++.|+++++++|.+.
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~  162 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRIS  162 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCE
T ss_pred             ccccccccccCchhhccCcccceeeccccccc
Confidence            777666544 33 4566666666666666554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.2e-12  Score=119.15  Aligned_cols=107  Identities=18%  Similarity=0.306  Sum_probs=75.1

Q ss_pred             CCCCCccEEEeeCCCCCCCC--CCCCCCCCcEEEccCCCCCCC-C--CCCCCCCCcEEEecC-CCCCCCC--CCCCCCCC
Q 015448           16 CDPNSIKSLSLTHKALSDVS--CLTDFNNLERLDLSSNNLTSL-E--GLKHCVNLKWLSLVQ-NKLQSLK--GIEGLSKP   87 (406)
Q Consensus        16 ~~~~~L~~L~Ls~n~l~~i~--~l~~l~~L~~L~Ls~N~l~~l-~--~l~~L~~L~~L~Ls~-N~l~~l~--~l~~l~~L   87 (406)
                      .-+.++++|+|++|.|+.++  .|.++++|++|+|++|.+... +  .|..++.+++|.+.. |.+..++  .+..+++|
T Consensus        26 ~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L  105 (242)
T d1xwdc1          26 DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL  105 (242)
T ss_dssp             CSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTC
T ss_pred             CCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccc
Confidence            33568999999999999886  688999999999999988753 3  367788888888764 5666555  36778888


Q ss_pred             cEEEcCCCCCCCCcCCCC---CCCCCEEEccCCccCCc
Q 015448           88 TVLNVGKNKLRSMDDVTS---VVSLRALILNDNEIVSI  122 (406)
Q Consensus        88 ~~L~Ls~N~i~~l~~l~~---l~~L~~L~Ls~N~i~~l  122 (406)
                      ++|++++|.+..++.+..   +..|..+...++.+..+
T Consensus       106 ~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i  143 (242)
T d1xwdc1         106 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI  143 (242)
T ss_dssp             CEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEE
T ss_pred             cccccchhhhcccccccccccccccccccccccccccc
Confidence            888888888776543322   23333333444444443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.34  E-value=1.6e-15  Score=136.17  Aligned_cols=139  Identities=27%  Similarity=0.356  Sum_probs=108.7

Q ss_pred             CCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCC-CCCCCCcEEEecCCCCCCCCCCCCCCCCcEEEcCC
Q 015448           16 CDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGL-KHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGK   94 (406)
Q Consensus        16 ~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l-~~L~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~   94 (406)
                      ..+++|++|+|++|.|+.++.|..|++|++|+|++|.|+.++++ ..+++|++|++++|.|+.++++..+++|++|+|++
T Consensus        45 ~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~~L~L~~  124 (198)
T d1m9la_          45 STLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSN  124 (198)
T ss_dssp             HHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHHHHHHHHHSSEEEESE
T ss_pred             hcccccceeECcccCCCCcccccCCccccChhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34789999999999999999889999999999999999999874 34568999999999999998888899999999999


Q ss_pred             CCCCCCc---CCCCCCCCCEEEccCCccCCccc-cCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCch
Q 015448           95 NKLRSMD---DVTSVVSLRALILNDNEIVSICK-LDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYD  157 (406)
Q Consensus        95 N~i~~l~---~l~~l~~L~~L~Ls~N~i~~l~~-l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~  157 (406)
                      |.|+.++   .+..+++|+.|+|++|++..... ......++...+ ..+|+|+.||  +.+|+...
T Consensus       125 N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi-~~lp~L~~LD--~~~I~~~e  188 (198)
T d1m9la_         125 NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV-KRLPNLKKLD--GMPVDVDE  188 (198)
T ss_dssp             EECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHH-HHCSSCCEES--SGGGTTTT
T ss_pred             chhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHH-HHCCCcCEeC--CccCCHHH
Confidence            9999875   47899999999999998865432 111100000000 2567788765  66665443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.24  E-value=1.1e-10  Score=110.12  Aligned_cols=99  Identities=26%  Similarity=0.320  Sum_probs=66.5

Q ss_pred             CCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCCCCCCCcEEEcCCCCCC
Q 015448           19 NSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIEGLSKPTVLNVGKNKLR   98 (406)
Q Consensus        19 ~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~i~   98 (406)
                      .++++|+|+++.++.+|.+  +++|++|+|++|.|+.+|..  +.+|+.|++++|.++.++.+.  +.|++|++++|.|.
T Consensus        38 ~~l~~LdLs~~~L~~lp~~--~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l~~l~~lp--~~L~~L~L~~n~l~  111 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLE  111 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCS
T ss_pred             cCCCEEEeCCCCCCCCCCC--CCCCCEEECCCCCCcccccc--hhhhhhhhhhhcccchhhhhc--cccccccccccccc
Confidence            3566777777777776632  45677777777777777643  456777777777777666432  35777777777777


Q ss_pred             CCcCCCCCCCCCEEEccCCccCCcc
Q 015448           99 SMDDVTSVVSLRALILNDNEIVSIC  123 (406)
Q Consensus        99 ~l~~l~~l~~L~~L~Ls~N~i~~l~  123 (406)
                      .+|.+..+++|++|++++|.+...+
T Consensus       112 ~lp~~~~l~~L~~L~l~~~~~~~~~  136 (353)
T d1jl5a_         112 KLPELQNSSFLKIIDVDNNSLKKLP  136 (353)
T ss_dssp             SCCCCTTCTTCCEEECCSSCCSCCC
T ss_pred             cccchhhhccceeeccccccccccc
Confidence            7776666777777777777665543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.24  E-value=4.5e-11  Score=112.89  Aligned_cols=127  Identities=23%  Similarity=0.331  Sum_probs=98.9

Q ss_pred             ccccccccCCCCCCCCCCccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCCCCCCCcEEEecCCCCCCCCCCC
Q 015448            3 RLSTQQILKDNKTCDPNSIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEGLKHCVNLKWLSLVQNKLQSLKGIE   82 (406)
Q Consensus         3 ~Ls~n~i~~~~~~~~~~~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~L~~L~~L~Ls~N~l~~l~~l~   82 (406)
                      +|+.+.++.+..  .+++|++|+|++|.|+.+|..  +.+|+.|++++|.++.++.+.  +.|++|+|++|.|..+|.+.
T Consensus        44 dLs~~~L~~lp~--~~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l~~l~~lp--~~L~~L~L~~n~l~~lp~~~  117 (353)
T d1jl5a_          44 ELNNLGLSSLPE--LPPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLPELQ  117 (353)
T ss_dssp             ECTTSCCSCCCS--CCTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCCCCT
T ss_pred             EeCCCCCCCCCC--CCCCCCEEECCCCCCcccccc--hhhhhhhhhhhcccchhhhhc--cccccccccccccccccchh
Confidence            566666665542  367899999999999988843  568999999999998887543  46999999999999999888


Q ss_pred             CCCCCcEEEcCCCCCCCCcCCCCCCCCCEEEccCCccCCccccCCCCCCcEeeCC
Q 015448           83 GLSKPTVLNVGKNKLRSMDDVTSVVSLRALILNDNEIVSICKLDQMKELNTLGMD  137 (406)
Q Consensus        83 ~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls  137 (406)
                      .+++|++|++++|.+...+.  ....+..|.+..+.......+..++.++.|.+.
T Consensus       118 ~l~~L~~L~l~~~~~~~~~~--~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~  170 (353)
T d1jl5a_         118 NSSFLKIIDVDNNSLKKLPD--LPPSLEFIAAGNNQLEELPELQNLPFLTAIYAD  170 (353)
T ss_dssp             TCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECC
T ss_pred             hhccceeecccccccccccc--ccccccchhhccccccccccccccccceecccc
Confidence            89999999999998877653  245677888888777766666666666666554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.22  E-value=2.8e-12  Score=121.35  Aligned_cols=160  Identities=18%  Similarity=0.212  Sum_probs=123.5

Q ss_pred             CCCCCCCccEEEeeC-CCCC-CCC-CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCC-CCC-CCCCCCC
Q 015448           14 KTCDPNSIKSLSLTH-KALS-DVS-CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQ-SLK-GIEGLSK   86 (406)
Q Consensus        14 ~~~~~~~L~~L~Ls~-n~l~-~i~-~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~-~l~-~l~~l~~   86 (406)
                      .++.+++|++|+|++ |.++ .+| .+..+++|++|+|++|.|..++.  +..+..|++|++++|.+. .+| .+..++.
T Consensus        71 ~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~  150 (313)
T d1ogqa_          71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN  150 (313)
T ss_dssp             GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred             HHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcc
Confidence            345689999999986 7887 576 78999999999999999987753  778899999999999877 455 6889999


Q ss_pred             CcEEEcCCCCCCC-Cc-CCCCCCCC-CEEEccCCccCCcc-------------------------ccCCCCCCcEeeCC-
Q 015448           87 PTVLNVGKNKLRS-MD-DVTSVVSL-RALILNDNEIVSIC-------------------------KLDQMKELNTLGMD-  137 (406)
Q Consensus        87 L~~L~Ls~N~i~~-l~-~l~~l~~L-~~L~Ls~N~i~~l~-------------------------~l~~L~~L~~L~Ls-  137 (406)
                      |+++++++|.+.. +| .+..+..+ +.+++++|.++...                         .+..+++|+.|+++ 
T Consensus       151 L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~  230 (313)
T d1ogqa_         151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK  230 (313)
T ss_dssp             CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCS
T ss_pred             cceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999874 55 45566554 77888887664321                         13345566666666 


Q ss_pred             ----------CCCCCCCEEEcCCCCCC-CchhHHHHHHhcCCCcccccCcC
Q 015448          138 ----------SYFFNLNNLNLQGNPVA-EYDKLAKKVKTLLPNLCIFNARP  177 (406)
Q Consensus       138 ----------~~l~~L~~L~Ls~N~i~-~~~~~~~~~~~~lp~L~~Ld~~~  177 (406)
                                ..+++|+.|+|++|.++ .+|.    .+..+++|+.|+...
T Consensus       231 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~----~l~~L~~L~~L~Ls~  277 (313)
T d1ogqa_         231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ----GLTQLKFLHSLNVSF  277 (313)
T ss_dssp             SEECCBGGGCCCCTTCCEEECCSSCCEECCCG----GGGGCTTCCEEECCS
T ss_pred             ccccccccccccccccccccCccCeecccCCh----HHhCCCCCCEEECcC
Confidence                      56789999999999998 4554    257889999887653

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=6.2e-11  Score=101.60  Aligned_cols=107  Identities=24%  Similarity=0.216  Sum_probs=68.6

Q ss_pred             CCcEEEccCCCCCCCC-CCCCCCCCcEEEecCC-CCCCCC--CCCCCCCCcEEEcCCCCCCCCc--CCCCCCCCCEEEcc
Q 015448           42 NLERLDLSSNNLTSLE-GLKHCVNLKWLSLVQN-KLQSLK--GIEGLSKPTVLNVGKNKLRSMD--DVTSVVSLRALILN  115 (406)
Q Consensus        42 ~L~~L~Ls~N~l~~l~-~l~~L~~L~~L~Ls~N-~l~~l~--~l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls  115 (406)
                      ....++.+++.+...+ .+..+++|+.|+|++| .|+.++  .|.++++|+.|+|++|.|+.++  .|..+++|++|+|+
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            3445555555555543 3556666777777554 366666  3677777777777777777764  36677777777777


Q ss_pred             CCccCCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCchhH
Q 015448          116 DNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEYDKL  159 (406)
Q Consensus       116 ~N~i~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~~~~  159 (406)
                      +|+|+.++.-. +          ...+|+.|+|++|++.+...+
T Consensus        89 ~N~l~~l~~~~-~----------~~~~l~~L~L~~Np~~C~C~~  121 (156)
T d2ifga3          89 FNALESLSWKT-V----------QGLSLQELVLSGNPLHCSCAL  121 (156)
T ss_dssp             SSCCSCCCSTT-T----------CSCCCCEEECCSSCCCCCGGG
T ss_pred             CCCCcccChhh-h----------ccccccccccCCCcccCCchH
Confidence            77777766411 1          112577888888888765543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=4.6e-11  Score=102.44  Aligned_cols=109  Identities=26%  Similarity=0.365  Sum_probs=92.4

Q ss_pred             CCCCCccEEEeeCCCCCCCC-CCCCCCCCcEEEccCC-CCCCCC--CCCCCCCCcEEEecCCCCCCCC--CCCCCCCCcE
Q 015448           16 CDPNSIKSLSLTHKALSDVS-CLTDFNNLERLDLSSN-NLTSLE--GLKHCVNLKWLSLVQNKLQSLK--GIEGLSKPTV   89 (406)
Q Consensus        16 ~~~~~L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N-~l~~l~--~l~~L~~L~~L~Ls~N~l~~l~--~l~~l~~L~~   89 (406)
                      +.+.....++++++.+..++ .+..+++|+.|+|++| .|+.++  .|.++++|+.|+|++|.|+.|+  .|..+++|++
T Consensus         5 C~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           5 CCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             SCCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             CCcCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence            44556678999999998886 7888999999999766 599886  4999999999999999999997  3899999999


Q ss_pred             EEcCCCCCCCCc-CCCCCCCCCEEEccCCccCCccc
Q 015448           90 LNVGKNKLRSMD-DVTSVVSLRALILNDNEIVSICK  124 (406)
Q Consensus        90 L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~N~i~~l~~  124 (406)
                      |+|++|.|+.++ .+....+|+.|+|++|.+..-..
T Consensus        85 L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~C~C~  120 (156)
T d2ifga3          85 LNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCA  120 (156)
T ss_dssp             EECCSSCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred             eeccCCCCcccChhhhccccccccccCCCcccCCch
Confidence            999999999987 34445579999999999865433

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.6e-09  Score=97.83  Aligned_cols=135  Identities=16%  Similarity=0.229  Sum_probs=104.2

Q ss_pred             cEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCCCC--CCCCCCCcEEEecCCCCCC-CC--CCCCCCCCcEEEcCC-
Q 015448           22 KSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSLEG--LKHCVNLKWLSLVQNKLQS-LK--GIEGLSKPTVLNVGK-   94 (406)
Q Consensus        22 ~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l~~--l~~L~~L~~L~Ls~N~l~~-l~--~l~~l~~L~~L~Ls~-   94 (406)
                      +.++++++.++.+| .+  .+++++|+|++|.|+.++.  |.++++|++|+|++|.+.. ++  .|..++.++.|.+.. 
T Consensus        11 ~~i~c~~~~l~~iP~~l--~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             SEEEEESCSCSSCCSCS--CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             CEEEEeCCCCCCcCCCC--CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            68999999999988 33  3589999999999998864  8999999999999999875 44  478899999998864 


Q ss_pred             CCCCCCc--CCCCCCCCCEEEccCCccCCccccCCCCCCcEee---CC------------CC-CCCCCEEEcCCCCCCCc
Q 015448           95 NKLRSMD--DVTSVVSLRALILNDNEIVSICKLDQMKELNTLG---MD------------SY-FFNLNNLNLQGNPVAEY  156 (406)
Q Consensus        95 N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~---Ls------------~~-l~~L~~L~Ls~N~i~~~  156 (406)
                      |.+..++  .+..+++|++|++++|.+...+.+..+..++.|.   ..            .. ...+..|++++|.++.+
T Consensus        89 n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i  168 (242)
T d1xwdc1          89 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI  168 (242)
T ss_dssp             TTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred             ccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccc
Confidence            5676654  4788999999999999998877655444444332   22            12 23677788888888776


Q ss_pred             hh
Q 015448          157 DK  158 (406)
Q Consensus       157 ~~  158 (406)
                      +.
T Consensus       169 ~~  170 (242)
T d1xwdc1         169 HN  170 (242)
T ss_dssp             CT
T ss_pred             cc
Confidence            54

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=2.2e-10  Score=107.23  Aligned_cols=159  Identities=18%  Similarity=0.215  Sum_probs=111.2

Q ss_pred             CCCCccEEEeeCCCCCCC--C-CCCCCCCCcEEEccCCCCCCC--CCCCCCCCCcEEEecCC-CCCC--CCC-CCCCCCC
Q 015448           17 DPNSIKSLSLTHKALSDV--S-CLTDFNNLERLDLSSNNLTSL--EGLKHCVNLKWLSLVQN-KLQS--LKG-IEGLSKP   87 (406)
Q Consensus        17 ~~~~L~~L~Ls~n~l~~i--~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~L~~L~~L~Ls~N-~l~~--l~~-l~~l~~L   87 (406)
                      .+.+|++|+|+++.++..  . .+..+++|++|+|++|.++..  ..+..+++|++|+|++| .++.  +.. +..+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            456899999998887653  2 567889999999999987653  34777899999999985 5653  222 3567899


Q ss_pred             cEEEcCCCC-CCC--Cc-CCC-CCCCCCEEEccCC--ccCC--ccc-cCCCCCCcEeeCC-------------CCCCCCC
Q 015448           88 TVLNVGKNK-LRS--MD-DVT-SVVSLRALILNDN--EIVS--ICK-LDQMKELNTLGMD-------------SYFFNLN  144 (406)
Q Consensus        88 ~~L~Ls~N~-i~~--l~-~l~-~l~~L~~L~Ls~N--~i~~--l~~-l~~L~~L~~L~Ls-------------~~l~~L~  144 (406)
                      ++|+|++|. +++  +. .+. ..++|+.|+++++  .++.  +.. +..+++|++|+|+             ..+++|+
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~  203 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  203 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCC
Confidence            999999874 443  22 122 3468899999875  3433  222 3567888888887             5678899


Q ss_pred             EEEcCCC-CCCCchhHHHHHHhcCCCcccccCcCC
Q 015448          145 NLNLQGN-PVAEYDKLAKKVKTLLPNLCIFNARPI  178 (406)
Q Consensus       145 ~L~Ls~N-~i~~~~~~~~~~~~~lp~L~~Ld~~~~  178 (406)
                      +|+|++| .|++....   .+..+|+|+.|+...+
T Consensus       204 ~L~L~~C~~i~~~~l~---~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         204 HLSLSRCYDIIPETLL---ELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             EEECTTCTTCCGGGGG---GGGGCTTCCEEECTTS
T ss_pred             EEECCCCCCCChHHHH---HHhcCCCCCEEeeeCC
Confidence            9999885 45543321   2567888888887665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=4.1e-11  Score=103.30  Aligned_cols=88  Identities=26%  Similarity=0.423  Sum_probs=70.6

Q ss_pred             CCCCCCcEEEcCCCCCCCCcC----CCCCCCCCEEEccCCccCCccccCCCCCCcEeeCCCCCCCCCEEEcCCCCCCCc-
Q 015448           82 EGLSKPTVLNVGKNKLRSMDD----VTSVVSLRALILNDNEIVSICKLDQMKELNTLGMDSYFFNLNNLNLQGNPVAEY-  156 (406)
Q Consensus        82 ~~l~~L~~L~Ls~N~i~~l~~----l~~l~~L~~L~Ls~N~i~~l~~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~~~-  156 (406)
                      ..++.|++|+|++|+|+.++.    +..+++|+.|+|++|.|+.++.+..+          ...+|+.|++++|+++.. 
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l----------~~~~L~~L~L~~Npl~~~~  131 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKI----------KGLKLEELWLDGNSLSDTF  131 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHH----------TTCCCSSCCCTTSTTSSSS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhh----------hccccceeecCCCCcCcCc
Confidence            457788888888888888754    34588999999999999988765443          233689999999999764 


Q ss_pred             ---hhHHHHHHhcCCCcccccCcCCC
Q 015448          157 ---DKLAKKVKTLLPNLCIFNARPID  179 (406)
Q Consensus       157 ---~~~~~~~~~~lp~L~~Ld~~~~~  179 (406)
                         ..|+..++..+|+|+.||+..++
T Consensus       132 ~~~~~y~~~i~~~~P~L~~LDg~~v~  157 (162)
T d1koha1         132 RDQSTYISAIRERFPKLLRLDGHELP  157 (162)
T ss_dssp             SSHHHHHHHHHTTSTTCCEETTEECC
T ss_pred             ccchhHHHHHHHHCCCCCEECcCCCc
Confidence               46788899999999999998874

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.73  E-value=2.6e-09  Score=101.85  Aligned_cols=163  Identities=18%  Similarity=0.148  Sum_probs=99.8

Q ss_pred             CCCCCCccEEEeeCCCCCCCC------------CCCCCCCCcEEEccCCCCCCCC------CCCCCCCCcEEEecCCCCC
Q 015448           15 TCDPNSIKSLSLTHKALSDVS------------CLTDFNNLERLDLSSNNLTSLE------GLKHCVNLKWLSLVQNKLQ   76 (406)
Q Consensus        15 ~~~~~~L~~L~Ls~n~l~~i~------------~l~~l~~L~~L~Ls~N~l~~l~------~l~~L~~L~~L~Ls~N~l~   76 (406)
                      ....++|+.|+++++.+..+.            .+..+++|+.|+|++|.++...      .+..+++|++|+|++|.+.
T Consensus        55 l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~  134 (344)
T d2ca6a1          55 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG  134 (344)
T ss_dssp             TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             HHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheeccccccc
Confidence            445678888888877665431            3556788888888888887642      2445678888888888764


Q ss_pred             CCC------C---------CCCCCCCcEEEcCCCCCCCC-----c-CCCCCCCCCEEEccCCccCCc-------cccCCC
Q 015448           77 SLK------G---------IEGLSKPTVLNVGKNKLRSM-----D-DVTSVVSLRALILNDNEIVSI-------CKLDQM  128 (406)
Q Consensus        77 ~l~------~---------l~~l~~L~~L~Ls~N~i~~l-----~-~l~~l~~L~~L~Ls~N~i~~l-------~~l~~L  128 (406)
                      ...      .         ....+.|+.|.+++|.+..-     . .+..++.|+.|+|++|.|+.-       ..+..+
T Consensus       135 ~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~  214 (344)
T d2ca6a1         135 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC  214 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC
T ss_pred             ccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcch
Confidence            210      0         13455677777777766542     1 234556677777777776541       124556


Q ss_pred             CCCcEeeCC----------------CCCCCCCEEEcCCCCCCCchhHHH-HHHhc--CCCcccccCcC
Q 015448          129 KELNTLGMD----------------SYFFNLNNLNLQGNPVAEYDKLAK-KVKTL--LPNLCIFNARP  177 (406)
Q Consensus       129 ~~L~~L~Ls----------------~~l~~L~~L~Ls~N~i~~~~~~~~-~~~~~--lp~L~~Ld~~~  177 (406)
                      ++|+.|+|+                ..+++|++|+|++|.|........ ..+..  .+.|+.|+...
T Consensus       215 ~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~  282 (344)
T d2ca6a1         215 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQY  282 (344)
T ss_dssp             TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCS
T ss_pred             hhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCC
Confidence            677777776                466777788888887765432111 12222  34566666543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=6.2e-09  Score=97.12  Aligned_cols=158  Identities=16%  Similarity=0.147  Sum_probs=109.8

Q ss_pred             ccEEEeeCCCCCCCC-CCCCCCCCcEEEccCCCCCCC--CC-CCCCCCCcEEEecCCCCCC--CCCCCCCCCCcEEEcCC
Q 015448           21 IKSLSLTHKALSDVS-CLTDFNNLERLDLSSNNLTSL--EG-LKHCVNLKWLSLVQNKLQS--LKGIEGLSKPTVLNVGK   94 (406)
Q Consensus        21 L~~L~Ls~n~l~~i~-~l~~l~~L~~L~Ls~N~l~~l--~~-l~~L~~L~~L~Ls~N~l~~--l~~l~~l~~L~~L~Ls~   94 (406)
                      +..+.++...+.... .......|++|+|+++.++..  .. +..+++|++|+|++|.+..  +..+..+++|++|+|++
T Consensus        25 ~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          25 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             CSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             ceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence            344555554444322 333556899999999988653  22 6789999999999998874  22577889999999999


Q ss_pred             C-CCCC--CcC-CCCCCCCCEEEccCC-ccCCc--cc-cC-CCCCCcEeeCC---------------CCCCCCCEEEcCC
Q 015448           95 N-KLRS--MDD-VTSVVSLRALILNDN-EIVSI--CK-LD-QMKELNTLGMD---------------SYFFNLNNLNLQG  150 (406)
Q Consensus        95 N-~i~~--l~~-l~~l~~L~~L~Ls~N-~i~~l--~~-l~-~L~~L~~L~Ls---------------~~l~~L~~L~Ls~  150 (406)
                      | .+++  +.. +..+++|++|++++| .++..  .. +. .++.|+.|+++               ..+++|++|+|++
T Consensus       105 c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~  184 (284)
T d2astb2         105 CSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD  184 (284)
T ss_dssp             CBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTT
T ss_pred             cccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccccccccccccccccccc
Confidence            6 5664  233 346899999999996 44432  11 22 34678888886               4678999999998


Q ss_pred             CC-CCCchhHHHHHHhcCCCcccccCcCCChh
Q 015448          151 NP-VAEYDKLAKKVKTLLPNLCIFNARPIDRI  181 (406)
Q Consensus       151 N~-i~~~~~~~~~~~~~lp~L~~Ld~~~~~~~  181 (406)
                      |. +++.. +.  .+..+++|+.|+...+...
T Consensus       185 ~~~itd~~-~~--~l~~~~~L~~L~L~~C~~i  213 (284)
T d2astb2         185 SVMLKNDC-FQ--EFFQLNYLQHLSLSRCYDI  213 (284)
T ss_dssp             CTTCCGGG-GG--GGGGCTTCCEEECTTCTTC
T ss_pred             ccCCCchh-hh--hhcccCcCCEEECCCCCCC
Confidence            75 54332 21  2567899999988765543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.58  E-value=1.1e-08  Score=97.29  Aligned_cols=162  Identities=19%  Similarity=0.233  Sum_probs=120.8

Q ss_pred             CCCCccEEEeeCCCCCCC-----C-CCCCCCCCcEEEccCCCCCCCC------------CCCCCCCCcEEEecCCCCCCC
Q 015448           17 DPNSIKSLSLTHKALSDV-----S-CLTDFNNLERLDLSSNNLTSLE------------GLKHCVNLKWLSLVQNKLQSL   78 (406)
Q Consensus        17 ~~~~L~~L~Ls~n~l~~i-----~-~l~~l~~L~~L~Ls~N~l~~l~------------~l~~L~~L~~L~Ls~N~l~~l   78 (406)
                      ....|+.|+|++|.|...     . .+..+++|+.|+++++.+....            .+..+++|+.|+|++|.+...
T Consensus        29 ~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  108 (344)
T d2ca6a1          29 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  108 (344)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             hCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccc
Confidence            367899999999988663     2 6788899999999988765431            256789999999999998753


Q ss_pred             C------CCCCCCCCcEEEcCCCCCCCC---------c------CCCCCCCCCEEEccCCccCCcc------ccCCCCCC
Q 015448           79 K------GIEGLSKPTVLNVGKNKLRSM---------D------DVTSVVSLRALILNDNEIVSIC------KLDQMKEL  131 (406)
Q Consensus        79 ~------~l~~l~~L~~L~Ls~N~i~~l---------~------~l~~l~~L~~L~Ls~N~i~~l~------~l~~L~~L  131 (406)
                      .      .+..+++|++|++++|.+...         .      .....+.|+.|.+++|.++.-.      .+..++.|
T Consensus       109 ~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L  188 (344)
T d2ca6a1         109 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL  188 (344)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred             cccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhh
Confidence            2      245678999999999987541         0      1235678999999999886532      15567788


Q ss_pred             cEeeCC-----------------CCCCCCCEEEcCCCCCCCchh-HHHHHHhcCCCcccccCcCC
Q 015448          132 NTLGMD-----------------SYFFNLNNLNLQGNPVAEYDK-LAKKVKTLLPNLCIFNARPI  178 (406)
Q Consensus       132 ~~L~Ls-----------------~~l~~L~~L~Ls~N~i~~~~~-~~~~~~~~lp~L~~Ld~~~~  178 (406)
                      ++|+|+                 ..+++|+.|+|++|+++.... .....+..+++|+.|+...+
T Consensus       189 ~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n  253 (344)
T d2ca6a1         189 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC  253 (344)
T ss_dssp             CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred             cccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcC
Confidence            899887                 467889999999999865432 12235678889987775544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=7.5e-08  Score=93.10  Aligned_cols=38  Identities=18%  Similarity=0.069  Sum_probs=20.9

Q ss_pred             CCCCCCEEEcCCCCCCCchhH--HHHHHhcCCCcccccCc
Q 015448          139 YFFNLNNLNLQGNPVAEYDKL--AKKVKTLLPNLCIFNAR  176 (406)
Q Consensus       139 ~l~~L~~L~Ls~N~i~~~~~~--~~~~~~~lp~L~~Ld~~  176 (406)
                      .+++|++|+|++|+|+.....  ...+......|+.|+..
T Consensus       395 ~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~  434 (460)
T d1z7xw1         395 ANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLY  434 (460)
T ss_dssp             HCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             cCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECC
Confidence            346788888888888764321  11122223356655543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=2.4e-09  Score=91.92  Aligned_cols=101  Identities=23%  Similarity=0.222  Sum_probs=65.3

Q ss_pred             CccEEEeeCCCCCCCCCCCCCCCCcEEEccCCCCCCCCC-CCCCCCCcEEEecCCCCCCCCC----CCCCCCCcEEEcCC
Q 015448           20 SIKSLSLTHKALSDVSCLTDFNNLERLDLSSNNLTSLEG-LKHCVNLKWLSLVQNKLQSLKG----IEGLSKPTVLNVGK   94 (406)
Q Consensus        20 ~L~~L~Ls~n~l~~i~~l~~l~~L~~L~Ls~N~l~~l~~-l~~L~~L~~L~Ls~N~l~~l~~----l~~l~~L~~L~Ls~   94 (406)
                      ..+.|++++..  ..+.+..+..+..|.+..+.+..++. +..+++|++|+|++|+|+.+++    +..+++|+.|+|++
T Consensus        23 ~~~~Ldls~l~--~~~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~  100 (162)
T d1koha1          23 SQQALDLKGLR--SDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG  100 (162)
T ss_dssp             SSCCBCCCCCS--SCTTTTTTTCCCCTTSHHHHHHHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTT
T ss_pred             hhCeeecccCC--CCchhhhccchhhcchhhhHhhhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCccccccccc
Confidence            44556665433  22333333333333333333333332 3467889999999999988764    45688999999999


Q ss_pred             CCCCCCcCCC--CCCCCCEEEccCCccCCc
Q 015448           95 NKLRSMDDVT--SVVSLRALILNDNEIVSI  122 (406)
Q Consensus        95 N~i~~l~~l~--~l~~L~~L~Ls~N~i~~l  122 (406)
                      |.|++++.+.  ....|+.|++++|++...
T Consensus       101 N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1         101 NELKSERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             SCCCCGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             CccccchhhhhhhccccceeecCCCCcCcC
Confidence            9999987532  345689999999998754

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=2e-07  Score=89.91  Aligned_cols=102  Identities=25%  Similarity=0.289  Sum_probs=73.6

Q ss_pred             CccEEEeeCCCCCCCC---CCCCCCCCcEEEccCCCCCCCC------CCCCCCCCcEEEecCCCCCCC-----C-CCC-C
Q 015448           20 SIKSLSLTHKALSDVS---CLTDFNNLERLDLSSNNLTSLE------GLKHCVNLKWLSLVQNKLQSL-----K-GIE-G   83 (406)
Q Consensus        20 ~L~~L~Ls~n~l~~i~---~l~~l~~L~~L~Ls~N~l~~l~------~l~~L~~L~~L~Ls~N~l~~l-----~-~l~-~   83 (406)
                      +|+.|+|++|.|++..   .+..+++|++|+|++|.|+...      .+..+++|++|+|++|.|+..     . .+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            5788888888888743   4556778888888888887431      256788888888888888632     2 232 2


Q ss_pred             CCCCcEEEcCCCCCCCC-----c-CCCCCCCCCEEEccCCccCC
Q 015448           84 LSKPTVLNVGKNKLRSM-----D-DVTSVVSLRALILNDNEIVS  121 (406)
Q Consensus        84 l~~L~~L~Ls~N~i~~l-----~-~l~~l~~L~~L~Ls~N~i~~  121 (406)
                      ..+|++|+|++|.|+..     + .+..+++|++|+|++|.|..
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            34788888888888763     2 36677888888888887754

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.59  E-value=1.3e-05  Score=68.21  Aligned_cols=94  Identities=7%  Similarity=-0.050  Sum_probs=45.3

Q ss_pred             CCCCCCCcEEEcCCCCCCC--Cc----CCCCCCCCCEEEccCCccCCccc---cCCCCCCcEeeCCCCCCCCCEEEcCCC
Q 015448           81 IEGLSKPTVLNVGKNKLRS--MD----DVTSVVSLRALILNDNEIVSICK---LDQMKELNTLGMDSYFFNLNNLNLQGN  151 (406)
Q Consensus        81 l~~l~~L~~L~Ls~N~i~~--l~----~l~~l~~L~~L~Ls~N~i~~l~~---l~~L~~L~~L~Ls~~l~~L~~L~Ls~N  151 (406)
                      +...+.|+.|+|++|.|+.  +.    .+...++|++|+|++|.|+.-..   +..+         ...+.|++|+|++|
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL---------~~n~sL~~L~l~~n  110 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRST---------LVTQSIVEFKADNQ  110 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHT---------TTTCCCSEEECCCC
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHH---------HhCCcCCEEECCCC
Confidence            3444555555555555543  11    23344566666666666654221   1111         13345666666666


Q ss_pred             CCCCch----hHHHHHHhcCCCcccccCcCCChhhh
Q 015448          152 PVAEYD----KLAKKVKTLLPNLCIFNARPIDRITK  183 (406)
Q Consensus       152 ~i~~~~----~~~~~~~~~lp~L~~Ld~~~~~~~~~  183 (406)
                      .+..+.    ......+...++|..|+.......++
T Consensus       111 ~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~~~~  146 (167)
T d1pgva_         111 RQSVLGNQVEMDMMMAIEENESLLRVGISFASMEAR  146 (167)
T ss_dssp             SSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHHHH
T ss_pred             cCCCccHHHHHHHHHHHHhCCCccEeeCcCCCchHH
Confidence            554431    11122344566666666555444433

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.55  E-value=1.2e-05  Score=68.49  Aligned_cols=108  Identities=15%  Similarity=0.128  Sum_probs=61.7

Q ss_pred             CCCCCcEEEccCC-CCCCC------CCCCCCCCCcEEEecCCCCCC--CC----CCCCCCCCcEEEcCCCCCCCC-----
Q 015448           39 DFNNLERLDLSSN-NLTSL------EGLKHCVNLKWLSLVQNKLQS--LK----GIEGLSKPTVLNVGKNKLRSM-----  100 (406)
Q Consensus        39 ~l~~L~~L~Ls~N-~l~~l------~~l~~L~~L~~L~Ls~N~l~~--l~----~l~~l~~L~~L~Ls~N~i~~l-----  100 (406)
                      +.++|+.|+|+++ .++.-      ..+...++|+.|+|++|.+..  +.    .+...+.|+.|+|++|.|+.-     
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3456666666653 34321      124555667777777776652  11    244556777777777777651     


Q ss_pred             -cCCCCCCCCCEEEccCCccCCccc--cCCC-CCCcEeeCCCCCCCCCEEEcCCCC
Q 015448          101 -DDVTSVVSLRALILNDNEIVSICK--LDQM-KELNTLGMDSYFFNLNNLNLQGNP  152 (406)
Q Consensus       101 -~~l~~l~~L~~L~Ls~N~i~~l~~--l~~L-~~L~~L~Ls~~l~~L~~L~Ls~N~  152 (406)
                       ..+...++|++|+|++|.+..+..  ...+ ..|      ...++|+.|+++.+.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L------~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAI------EENESLLRVGISFAS  142 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHH------HHCSSCCEEECCCCC
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHH------HhCCCccEeeCcCCC
Confidence             246667778888888877665431  0000 001      134577788887654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.75  E-value=0.00021  Score=60.05  Aligned_cols=93  Identities=11%  Similarity=0.056  Sum_probs=44.3

Q ss_pred             CCCCCCCcEEEcCCCCCCCC------cCCCCCCCCCEEEccCCccCCccc---cCCCCCCcEeeCCCCCCCCCEEEc--C
Q 015448           81 IEGLSKPTVLNVGKNKLRSM------DDVTSVVSLRALILNDNEIVSICK---LDQMKELNTLGMDSYFFNLNNLNL--Q  149 (406)
Q Consensus        81 l~~l~~L~~L~Ls~N~i~~l------~~l~~l~~L~~L~Ls~N~i~~l~~---l~~L~~L~~L~Ls~~l~~L~~L~L--s  149 (406)
                      +..++.|+.|+|++|.|+.-      ..+...++|+.|++++|.+..-..   +..+         ...++|+.++|  +
T Consensus        42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l---------~~~~~L~~l~L~l~  112 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEAL---------QSNTSLIELRIDNQ  112 (166)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGG---------GGCSSCCEEECCCC
T ss_pred             HhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHH---------HhCccccEEeeccC
Confidence            34555566666666655441      123445566666666666543211   1111         12345554433  4


Q ss_pred             CCCCCCch-hHHHHHHhcCCCcccccCcCCChhh
Q 015448          150 GNPVAEYD-KLAKKVKTLLPNLCIFNARPIDRIT  182 (406)
Q Consensus       150 ~N~i~~~~-~~~~~~~~~lp~L~~Ld~~~~~~~~  182 (406)
                      +|.+.... ......+..+++|+.|+.......+
T Consensus       113 ~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~~~  146 (166)
T d1io0a_         113 SQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  146 (166)
T ss_dssp             SSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             CCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCCcH
Confidence            55554432 1122244566777766655444333

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.71  E-value=5.7e-05  Score=63.65  Aligned_cols=109  Identities=18%  Similarity=0.166  Sum_probs=62.5

Q ss_pred             CCCCCCcEEEccC-CCCCCC------CCCCCCCCCcEEEecCCCCCCC-----C-CCCCCCCCcEEEcCCCCCCCC----
Q 015448           38 TDFNNLERLDLSS-NNLTSL------EGLKHCVNLKWLSLVQNKLQSL-----K-GIEGLSKPTVLNVGKNKLRSM----  100 (406)
Q Consensus        38 ~~l~~L~~L~Ls~-N~l~~l------~~l~~L~~L~~L~Ls~N~l~~l-----~-~l~~l~~L~~L~Ls~N~i~~l----  100 (406)
                      .+.+.|++|+|++ +.|+.-      ..+..+++|++|+|++|.++.-     . .+...+.|+.|++++|.++.-    
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            3456677777765 345432      1245667777777777776631     1 245566778888888777651    


Q ss_pred             --cCCCCCCCCCEEEcc--CCccCCcc--ccCCCCCCcEeeCCCCCCCCCEEEcCCCCCC
Q 015448          101 --DDVTSVVSLRALILN--DNEIVSIC--KLDQMKELNTLGMDSYFFNLNNLNLQGNPVA  154 (406)
Q Consensus       101 --~~l~~l~~L~~L~Ls--~N~i~~l~--~l~~L~~L~~L~Ls~~l~~L~~L~Ls~N~i~  154 (406)
                        ..+...++|+.++|+  +|.+..-.  .+..  .|      ...++|+.|+|+.+...
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~--~L------~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN--ML------EKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH--HH------HHCSSCCEEECCCSSHH
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHH--HH------HhCCCcCEEeCcCCCCc
Confidence              245667778776554  55564421  1110  01      13457778888776543