Citrus Sinensis ID: 015463

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400------
Protein Sequence
MTPRGFLGLVILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDLS
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccEEEccccEEEEEEccccEEEEEEccccccccccccccccccEEccccccccEEEEEcccccEEEEEccccEEEEEccccEEEEEEEEEccccccccccEEEcccccEEEEcccccHHHcccccccccccccccccccccccccccccEEEEEccccccEEEEEcccccccEEEEcccccEEEEEEccccEEEEEEEEcccccccEEEEEcccccccEEEcccccEEEEEEccccHHHHHHHccHHHHHHHHHcccccEEEEEEEEccccEEEEEEEcccccEEEEEEcccccccccEEEEEEEccEEEEEcccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccEEEccccccEEEEccccEEEEEccccEEEEEEEccccccccccccccccccccccccccccEEEEccccccEEEEEccccEEEEcccccEEEEEEcccccccEEEccccEEccccEEEEEcccccccHHHHHHHHHHHHccccccccEEEEEcccccEEEEEcccccEEEEEEccccccccEEEcccccEEEEEEccHHHEEEEEEcccccccEEEEEccccccccccccccccEEEEEccccccHHHHHcccHHHHHHHHHccccHccHHHHcccccccEEEEEEcccccEEEEEEcccccEEEEEEEEEEEccEEEEEEccccEEEEEEcc
Coil and Loop (DISEMBL)
MTPRGFLGLVILLLAMYcgldplkhsaisefpdfvshkvdmppwsliptvkddknllQNSEIKFLnqiqgpesmafdplgrgpytgvadgrilfwdglkwtdfaftsnnrselcnpkpiatsylknehicgrplglrfdkktgdlYIADAYFGlmkvgpegglatslateaegvplrftndldiddegnvyftdsstnYQRRQMqkeniplqlcsslndpspikitkdtgrvlkydpttkQTTVLLRNlqfpnglslskdksffvfcegsvgrlHKYWLIgekagnleafailpgypdnvrtnekgEFWVAIHCRRSLYSHLMALYPKIRHFLLKlpisakthYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEekdgklwmgsVLMPFVAVYDLS
Flexible Loop (DISEMBL)
MTPRGFLGLVILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFtsnnrselcnpkPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRftndldiddegnVYFTDSSTNYQRRQMQKENIPlqlcsslndpspikitkdtgrvlkydpttkqttvlLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEveekdgklwmgsvLMPFVAVYDLS
Low Complexity Region (SEG)
MTPRGFLGLVILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDLS
Disordered region (IsUnstruct)
****GFLGLVILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFT******************************KITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYD**
Disordered Region (DISOPRED)
***RGFLGLVILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDLS
Disordered Region (DISEMBL)
MTPRGFLGLVILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDLS
Disordered Region (DISPRO)
*TPRGFLGLVILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDLS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTPRGFLGLVILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	406	2.2.26 [Sep-21-2011]
B5X3B2	416	Adipocyte plasma membrane	N/A	no	0.795	0.776	0.335	3e-42
Q3T0E5	412	Adipocyte plasma membrane	yes	no	0.775	0.764	0.34	4e-40
Q803F5	415	Adipocyte plasma membrane	no	no	0.793	0.775	0.335	4e-40
Q7TP48	376	Adipocyte plasma membrane	yes	no	0.896	0.968	0.312	4e-40
Q9D7N9	415	Adipocyte plasma membrane	yes	no	0.896	0.877	0.310	6e-40
P92976	329	Strictosidine synthase 3	no	no	0.699	0.863	0.339	6e-40
P94111	335	Strictosidine synthase 1	no	no	0.701	0.850	0.335	6e-40
Q9HDC9	416	Adipocyte plasma membrane	yes	no	0.780	0.762	0.329	9e-39
Q5ZIF1	415	Adipocyte plasma membrane	yes	no	0.812	0.795	0.332	3e-38
P18417	352	Strictosidine synthase OS	N/A	no	0.694	0.801	0.316	4e-37

>sp|B5X3B2|APMAP_SALSA Adipocyte plasma membrane-associated protein OS=Salmo salar GN=apmap PE=2 SV=1

 Score =  172 bits (437), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 119/355 (33%), Positives = 179/355 (50%), Gaps = 32/355 (9%)

Query: 57  LQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNP 116
           L+ ++  F +Q+ GPES+A    G   YTG ADG+I+  +G   T  A            
Sbjct: 87  LREAQRLFEDQLVGPESIA--NFGDLIYTGTADGKIVKIEGKSITVIARLG--------- 135

Query: 117 KPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAE---G 173
           KP      + E  CGRPLG+R     G L++ADAY GL KV P  G  T+L +  +   G
Sbjct: 136 KPPCDGSREQEPSCGRPLGIRVGP-NGTLFVADAYLGLFKVNPVTGEVTNLVSAGQMVGG 194

Query: 174 VPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRV 232
             L F NDLD+  +G  VYFTDSS+ +QRR        L L         ++ T D GRV
Sbjct: 195 RRLSFVNDLDVTQDGRKVYFTDSSSRWQRRDY------LHLI--------MEATAD-GRV 239

Query: 233 LKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA- 291
           L+YD  TK+ TVL+ NL+F NG+ L  D+   +  E ++ R+ +  + G   G ++ F  
Sbjct: 240 LEYDTETKEVTVLMENLRFANGIQLFPDEESVLVAETTMARIRRVHVSGLNKGGMDTFVD 299

Query: 292 ILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGR 351
            LPG+PDN+R +  G +WVA+   R      M  +   + ++ KL     +  ++     
Sbjct: 300 NLPGFPDNIRRSSSGGYWVAMSAVRPNPGFSMLDFLSQKPWIKKLIFKLFSQDVLMKFVP 359

Query: 352 LHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDLS 406
            +++ ++    G  ++   D  G V   +SE  E DG L++GS   P++   DLS
Sbjct: 360 RYSLVIELQESGACMRSFHDPHGMVAAYVSEAHEHDGHLYLGSFRSPYLCKLDLS 414

Salmo salar (taxid: 8030)

>sp|Q3T0E5|APMAP_BOVIN Adipocyte plasma membrane-associated protein OS=Bos taurus GN=APMAP PE=2 SV=1

 Score =  166 bits (419), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 119/350 (34%), Positives = 180/350 (51%), Gaps = 35/350 (10%)

Query: 57  LQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRIL-FWDGLKWTDFAFTSNNRSELCN 115
           LQ +E  F NQ+ GPES+A   +G   +TG ADGR++   +G   T   F S        
Sbjct: 87  LQQAERLFENQLVGPESIA--NIGDVMFTGTADGRVVKLENGEVETIARFGSG------- 137

Query: 116 PKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGP---EGGLATSLATEAE 172
             P  T    +E  CGRPLG+R     G L++ DAY GL +V P   E  L  S  T  E
Sbjct: 138 --PCKTR--DDEPACGRPLGIR-AGPNGTLFVVDAYKGLFEVNPWKREVKLLLSSETPIE 192

Query: 173 GVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGR 231
           G  + F NDL +  +G  +YFTDSS+ +QRR     +  L L    +D          GR
Sbjct: 193 GRKMSFLNDLTVTRDGRKIYFTDSSSKWQRR-----DYLLLLMEGTDD----------GR 237

Query: 232 VLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA 291
           +L+YD  TK+  VLL +L+FPNG+ LS  + F +  E ++ R+ ++++ G   G  + F 
Sbjct: 238 LLEYDTQTKEVKVLLDHLRFPNGVQLSPAEDFVLVVELAMVRIRRFYVSGLMKGGADVFV 297

Query: 292 I-LPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGG 350
             LPG+PDN+R +  G +WV++   R+     M  +   R FL K+     +   +    
Sbjct: 298 ENLPGFPDNIRASSSGGYWVSMAAIRANPGFSMLDFLSERPFLKKVIFKLFSQETVMKFV 357

Query: 351 RLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFV 400
             +++ ++ S  G  L+ L D +G+VV  +SE  E  G L++GS   P++
Sbjct: 358 PRYSLVLELSDSGTFLRSLHDPEGQVVTYVSEAHEHSGHLYLGSFRAPYL 407

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Bos taurus (taxid: 9913)

>sp|Q803F5|APMAP_DANRE Adipocyte plasma membrane-associated protein OS=Danio rerio GN=apmap PE=2 SV=1

 Score =  166 bits (419), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 119/355 (33%), Positives = 179/355 (50%), Gaps = 33/355 (9%)

Query: 57  LQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNP 116
           L+ +E  F  ++ GPES+A   +G   YTG ADG+I+  +G      A            
Sbjct: 87  LRQAERLFEERLVGPESLA--NIGDVFYTGTADGKIVKIEGRNIHVLATIG--------- 135

Query: 117 KPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAE---G 173
           KP   S  ++EH CGRPLG+R     G L++ADAY GL +V P  G   SL +  +   G
Sbjct: 136 KPPCGSR-EHEHTCGRPLGIRVGP-NGTLFVADAYLGLFEVNPVTGEVKSLVSTEKRIAG 193

Query: 174 VPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRV 232
             L F NDLD+  +G  VYFTDSS+ +QRR        + L         ++ T D GRV
Sbjct: 194 RRLGFVNDLDVTQDGKKVYFTDSSSRWQRRDF------MHLI--------MEATAD-GRV 238

Query: 233 LKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAF-A 291
           L+YD  TK+  V++ NL+FPNG+ L  D+   +  E ++ R+ +  + G   G ++ F  
Sbjct: 239 LEYDTETKEVNVMMENLRFPNGIQLFPDEESVLVAETTMARIKRVHVSGLNKGGMDTFIE 298

Query: 292 ILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGR 351
            LPG+PDN+R +  G +WVA+   R      M  +   R +L KL     +   +     
Sbjct: 299 NLPGFPDNIRRSSSGGYWVAMSAVRPNPGFSMLDFLSQRPWLKKLIFKLFSQDTLLKFVP 358

Query: 352 LHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDLS 406
            +++ V+   +G  ++   D +G V    SE  E  G L++GS   P++   DLS
Sbjct: 359 RYSLVVELQSDGTCVRSFHDPQGLVSAYSSEAHEYSGHLYLGSFRSPYLCKLDLS 413

Danio rerio (taxid: 7955)

>sp|Q7TP48|APMAP_RAT Adipocyte plasma membrane-associated protein OS=Rattus norvegicus GN=Apmap PE=2 SV=2

 Score =  165 bits (418), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 127/406 (31%), Positives = 194/406 (47%), Gaps = 42/406 (10%)

Query: 9   LVILLLAMYCGLDPLKHSAISEFP-DFVSHKVDMPPWS---LIPTVKDDKNLLQNSEIKF 64
           +  L+LA+   +  L    + E P D  S     PP+    L P  K     L+ +E  F
Sbjct: 1   MTFLMLAVSLAIPLLGAMMLLESPIDPQSFSFKEPPFMFGVLQPNTK-----LRQAERLF 55

Query: 65  LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYL 124
            NQ+ GPES+    +G   +TG ADGR++    L+  +    +   S  C  +       
Sbjct: 56  ENQLNGPESIV--NIGDVLFTGTADGRVV---KLENGEIETIARFGSGPCKTR------- 103

Query: 125 KNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEG---GLATSLATEAEGVPLRFTND 181
            +E  CGRPLG+R     G L++ DAY GL +V P+     L  S  T  EG  + F ND
Sbjct: 104 DDEPTCGRPLGIRVGP-NGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVND 162

Query: 182 LDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTK 240
           L I  +G  +YFTDSS+ +QRR        L L              D GR+L+YD  TK
Sbjct: 163 LTITRDGRKIYFTDSSSKWQRRDY------LLLVME---------GTDDGRLLEYDTVTK 207

Query: 241 QTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI-LPGYPDN 299
           +  VLL  LQFPNG+ LS ++ F +  E ++ R+ + ++ G   G  + F   +PG+PDN
Sbjct: 208 EVKVLLDQLQFPNGVQLSPEEDFVLVAETAMARIRRVYVSGLMKGGADMFVENMPGFPDN 267

Query: 300 VRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKY 359
           +R +  G +WVA    R+     M  +   + F+ ++     +   +      +++ ++ 
Sbjct: 268 IRPSSSGGYWVAAATIRANPGFSMLDFLSDKPFIKRMIFKLFSQETVMKFVPRYSLVLEV 327

Query: 360 SPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDL 405
           S  G   + L D  G+VV  +SE  E DG L++GS   PF+    L
Sbjct: 328 SDSGAFRRSLHDPDGQVVTYVSEAHEHDGYLYLGSFRSPFICRLSL 373

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Rattus norvegicus (taxid: 10116)

>sp|Q9D7N9|APMAP_MOUSE Adipocyte plasma membrane-associated protein OS=Mus musculus GN=Apmap PE=1 SV=1

 Score =  165 bits (418), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 126/406 (31%), Positives = 195/406 (48%), Gaps = 42/406 (10%)

Query: 9   LVILLLAMYCGLDPLKHSAISEFP-DFVSHKVDMPPW---SLIPTVKDDKNLLQNSEIKF 64
           +  L+LA+   +  L    + E P D  S     PP+    L P  K     L+ +E  F
Sbjct: 40  MTFLMLAVSLAIPLLGAMMLLESPIDPQSFSFKEPPFMFGVLHPNTK-----LRQAERLF 94

Query: 65  LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYL 124
            NQ+ GPES+    +G   +TG ADGR++    L+  +    +   S  C  +       
Sbjct: 95  ENQLSGPESIV--NIGDVLFTGTADGRVV---KLENGEIETIARFGSGPCKTR------- 142

Query: 125 KNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEG---GLATSLATEAEGVPLRFTND 181
            +E  CGRPLG+R     G L++ DAY GL +V P+     L  S  T  EG  + F ND
Sbjct: 143 DDEPTCGRPLGIR-AGPNGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVND 201

Query: 182 LDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTK 240
           L +  +G  +YFTDSS+ +QRR        L L         +    D GR+L+YD  TK
Sbjct: 202 LTVTRDGRKIYFTDSSSKWQRRDY------LLL---------VMEATDDGRLLEYDTVTK 246

Query: 241 QTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI-LPGYPDN 299
           +  VLL  LQFPNG+ LS ++ F +  E ++ R+ + ++ G   G  + F   +PG+PDN
Sbjct: 247 EVKVLLDQLQFPNGVQLSPEEDFVLVAETTMARIRRVYVSGLMKGGADMFVENMPGFPDN 306

Query: 300 VRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKY 359
           +R +  G +WVA    R+     M  +   + F+ ++     +   +      +++ ++ 
Sbjct: 307 IRPSSSGGYWVAAATIRANPGFSMLDFLSDKPFIKRMIFKMFSQETVMKFVPRYSLVLEV 366

Query: 360 SPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDL 405
           S  G   + L D  G+VV  +SE  E DG L++GS   PF+    L
Sbjct: 367 SDSGAFRRSLHDPDGQVVTYVSEAHEHDGYLYLGSFRSPFICRLSL 412

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate (By similarity). May play a role in adipocyte differentiation.

Mus musculus (taxid: 10090)

>sp|P92976|STS3_ARATH Strictosidine synthase 3 OS=Arabidopsis thaliana GN=SS3 PE=2 SV=2

 Score =  165 bits (418), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 116/342 (33%), Positives = 161/342 (47%), Gaps = 58/342 (16%)

Query: 70  GPESMAFDPLGRGPYTGVADGRILFWDGLK-WTDFA-FTSNNRSELCNPKPIATSYLKNE 127
           GPE+ AFD  G+G YTGV  G+IL +   K + DFA  T++++S LC+     T    N 
Sbjct: 40  GPEAFAFDSTGKGFYTGVTGGKILKYLPKKGYVDFAQITNSSKSSLCDGALGTT----NV 95

Query: 128 HICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDID-D 186
             CGRP G+ F+ KTGDLY+ADA  GL  +   GGLA  +A    G P  F + LD+D  
Sbjct: 96  EKCGRPAGIAFNTKTGDLYVADAALGLHVIPRRGGLAKKIADSVGGKPFLFLDGLDVDPT 155

Query: 187 EGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL 246
            G VYFT  S+ +  R + K                +     TG+  KYDP+ K  TVL+
Sbjct: 156 TGVVYFTSFSSTFGPRDVLKA---------------VATKDSTGKFFKYDPSKKVVTVLM 200

Query: 247 RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNV-RTNEK 305
             L    G ++S D SF +  + +   + +YW+ G KAG  E F      PDN+ R    
Sbjct: 201 EGLSGSAGCAVSSDGSFVLVGQFTKSNIKRYWIKGSKAGTSEDFTNSVSNPDNIKRIGST 260

Query: 306 GEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKI 365
           G FWVA     +                                G  +  AVK S  GK+
Sbjct: 261 GNFWVASVVNSAT-------------------------------GPTNPSAVKVSSAGKV 289

Query: 366 LQV--LEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDL 405
           LQ   L+D  G  +  +SEV E  G+L++G++  PF  +  L
Sbjct: 290 LQTIPLKDKFGDTL--VSEVNEYKGQLYIGALFGPFAGILKL 329

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P94111|STS1_ARATH Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2

 Score =  165 bits (417), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 115/343 (33%), Positives = 171/343 (49%), Gaps = 58/343 (16%)

Query: 69  QGPESMAFDPLGRGPYTGVADGRIL-FWDGLKWTDFA-FTSNNRSELCNPKPIATSYLKN 126
            GPE+ AFD  G+G YTGV+ G+IL +     + DFA  T ++ S  C+   I T+    
Sbjct: 37  SGPEAFAFDSTGKGFYTGVSGGKILKYLPETGYVDFAQITESSNSSWCD-GTIGTALAGR 95

Query: 127 EHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDID- 185
              CGRP G+ F++KTGDLY+ADA  GL  + P GGLAT +    +G P +F + LD+D 
Sbjct: 96  ---CGRPAGIAFNEKTGDLYVADAPLGLHVISPAGGLATKITDSVDGKPFKFLDGLDVDP 152

Query: 186 DEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVL 245
             G VYFT  S+ +          P+Q+  +L       +   TG++ KYDP+TK  TVL
Sbjct: 153 TTGVVYFTSFSSRFS---------PIQVLIALG------LKDATGKLYKYDPSTKVVTVL 197

Query: 246 LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNV-RTNE 304
           +  L    G ++S D SF +  + +   + +YW+ G KAG+ E F      PDN+ R   
Sbjct: 198 MEGLSGSAGCAVSSDGSFVLVSQFTKSNIKRYWIKGPKAGSSEDFTNSVSNPDNIKRIGS 257

Query: 305 KGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGK 364
            G FWVA    +                 + +P               +  AVK +  G+
Sbjct: 258 TGNFWVASVVNK-----------------IIVPT--------------NPSAVKVNSNGE 286

Query: 365 ILQV--LEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDL 405
           +LQ   L+D  G  +  +SEV E +G L++G++  PF  +  L
Sbjct: 287 VLQTIPLKDKFGDTL--LSEVNEFEGNLYIGTLTGPFAGILKL 327

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|Q9HDC9|APMAP_HUMAN Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2

 Score =  161 bits (407), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 118/358 (32%), Positives = 178/358 (49%), Gaps = 41/358 (11%)

Query: 57  LQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNP 116
           L+ +E  F NQ+ GPES+A   +G   +TG ADGR++    L+  +    +   S  C  
Sbjct: 88  LRQAERLFENQLVGPESIAH--IGDVMFTGTADGRVV---KLENGEIETIARFGSGPCKT 142

Query: 117 KPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGP---EGGLATSLATEAEG 173
           +        +E +CGRPLG+R     G L++ADAY GL +V P   E  L  S  T  EG
Sbjct: 143 R-------DDEPVCGRPLGIR-AGPNGTLFVADAYKGLFEVNPWKREVKLLLSSETPIEG 194

Query: 174 VPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRV 232
             + F NDL +  +G  +YFTDSS+ +QRR        L L              D GR+
Sbjct: 195 KNMSFVNDLTVTQDGRKIYFTDSSSKWQRRDY------LLLVME---------GTDDGRL 239

Query: 233 LKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI 292
           L+YD  T++  VLL  L+FPNG+ LS  + F +  E ++ R+ + ++ G   G  + F  
Sbjct: 240 LEYDTVTREVKVLLDQLRFPNGVQLSPAEDFVLVAETTMARIRRVYVSGLMKGGADLFVE 299

Query: 293 -LPGYPDNVRTNEKGEFWVAIHCRRSL--YSHL--MALYPKIRHFLLKLPISAKTHYLIH 347
            +PG+PDN+R +  G +WV +   R    +S L  ++  P I+  + KL         + 
Sbjct: 300 NMPGFPDNIRPSSSGGYWVGMSTIRPNPGFSMLDFLSERPWIKRMIFKLFSQETVMKFVP 359

Query: 348 VGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDL 405
                +++ ++ S  G   + L D  G V   ISEV E DG L++GS   PF+    L
Sbjct: 360 ----RYSLVLELSDSGAFRRSLHDPDGLVATYISEVHEHDGHLYLGSFRSPFLCRLSL 413

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Homo sapiens (taxid: 9606)

>sp|Q5ZIF1|APMAP_CHICK Adipocyte plasma membrane-associated protein OS=Gallus gallus GN=APMAP PE=2 SV=1

 Score =  159 bits (403), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 124/373 (33%), Positives = 183/373 (49%), Gaps = 43/373 (11%)

Query: 42  PPWSLIPTVKDDKNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWT 101
           PP  L+  V +  N LQ +E  + NQ+ GPES+    +G   +TG ADG+IL     K  
Sbjct: 74  PP--LLTGVLEPNNKLQKAERLWENQLVGPESIV--NIGDVLFTGTADGKIL-----KIE 124

Query: 102 DFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEG 161
           D    +  R       P  T   ++E  CGRPLG+R       L++ADAY+GL +V P  
Sbjct: 125 DGEVQTVAR---IGHGPCGTP--EDEPTCGRPLGIRVGPNN-TLFVADAYYGLYEVNPGT 178

Query: 162 G---LATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSL 217
           G   +  S  T  EG  L F NDL +  +G  +YFTDSS+ +QRR        L L    
Sbjct: 179 GETKMLVSTKTLIEGQKLSFLNDLTVTQDGRKIYFTDSSSKWQRRDF------LFLVME- 231

Query: 218 NDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKY 277
                     D GR+L+YD  TK+  VL+  L+FPNG+ LS  + F +  E ++ R+ +Y
Sbjct: 232 --------GTDDGRLLEYDTVTKEVKVLMVGLRFPNGVQLSPAEDFVLVLETAMARIRRY 283

Query: 278 WLIGEKAGNLEAFAI-LPGYPDNVRTNEKGEFWVAIHCRRSL--YSHL--MALYPKIRHF 332
           ++ G   G  + F   +PG PDN+R +  G +WVA+   R    +S L  ++  P I+  
Sbjct: 284 YVSGLMKGGADMFVENMPGLPDNIRLSSSGGYWVAMPVVRPNPGFSMLDFLSEKPWIKRM 343

Query: 333 LLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEKDGKLWM 392
           + KL        L+       ++ V+ S  G   +   D  G  V  +SE  E +G L++
Sbjct: 344 IFKLLSQETVTKLLPK----RSLVVELSETGSYRRSFHDPTGLTVPYVSEAHEHNGYLYL 399

Query: 393 GSVLMPFVAVYDL 405
           GS   PF+   +L
Sbjct: 400 GSFRSPFICRLNL 412

Gallus gallus (taxid: 9031)

>sp|P18417|STSY_CATRO Strictosidine synthase OS=Catharanthus roseus GN=STR1 PE=1 SV=2

 Score =  155 bits (393), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 110/348 (31%), Positives = 163/348 (46%), Gaps = 66/348 (18%)

Query: 70  GPESMAFDPLGRGPYTGVADGRILFWDGLK--WTDFAFTSN--NRSELCNPKPIATSYLK 125
            P +  FD   +G YT V DGR++ ++G    +TDFA+ S   N++   N     ++  +
Sbjct: 46  APNAFTFDSTDKGFYTSVQDGRVIKYEGPNSGFTDFAYASPFWNKAFCEN-----STDPE 100

Query: 126 NEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDID 185
              +CGR   + +D K   +YI D ++ L  VG EGG AT LAT  +GVP ++   + +D
Sbjct: 101 KRPLCGRTYDISYDYKNSQMYIVDGHYHLCVVGKEGGYATQLATSVQGVPFKWLYAVTVD 160

Query: 186 DE-GNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSP------IKITKDTGRVLKYDPT 238
              G VYFTD                    SS++D SP      +  +  TGR++KYDP+
Sbjct: 161 QRTGIVYFTD-------------------VSSIHDDSPEGVEEIMNTSDRTGRLMKYDPS 201

Query: 239 TKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPD 298
           TK+TT+LL+ L  P G  +S D SF V  E    R+ KYWL G K G+ E    +P  P 
Sbjct: 202 TKETTLLLKELHVPGGAEISADGSFVVVAEFLSNRIVKYWLEGPKKGSAEFLVTIPN-PG 260

Query: 299 NVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVK 358
           N++ N  G FWV+         H                            GR+ +  +K
Sbjct: 261 NIKRNSDGHFWVSSSEELDGGQH----------------------------GRVVSRGIK 292

Query: 359 YSPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVA--VYD 404
           +   G ILQV+        +   +++E DG L++GS+    V   VYD
Sbjct: 293 FDGFGNILQVIPLPPPYEGEHFEQIQEHDGLLYIGSLFHSSVGILVYD 340

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Catharanthus roseus (taxid: 4058)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	406
255545359	391	strictosidine synthase, putative [Ricinu	0.963	1.0	0.763	0.0
224054234	391	predicted protein [Populus trichocarpa]	0.963	1.0	0.748	1e-176
225436102	391	PREDICTED: adipocyte plasma membrane-ass	0.960	0.997	0.730	1e-173
18390900	390	strictosidine synthase-like 3 [Arabidops	0.945	0.984	0.694	1e-166
225436104	381	PREDICTED: adipocyte plasma membrane-ass	0.935	0.997	0.708	1e-165
297849156	390	strictosidine synthase family protein [A	0.938	0.976	0.691	1e-165
449530714	402	PREDICTED: adipocyte plasma membrane-ass	0.935	0.945	0.696	1e-163
449439172	402	PREDICTED: adipocyte plasma membrane-ass	0.935	0.945	0.696	1e-163
357453305	393	Adipocyte plasma membrane-associated pro	0.963	0.994	0.681	1e-161
356517675	441	PREDICTED: adipocyte plasma membrane-ass	0.955	0.879	0.672	1e-160

>gi|255545359|ref|XP_002513740.1| strictosidine synthase, putative [Ricinus communis] gi|223547191|gb|EEF48687.1| strictosidine synthase, putative [Ricinus communis]

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/406 (76%), Positives = 349/406 (85%), Gaps = 15/406 (3%)

Query: 1   MTPRGFLGLVILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNS 60
           MTPRG L  +I LLA+YCG+DP KHSAISEFPDF + KVD+P WSL+P  KD+ NLLQ S
Sbjct: 1   MTPRGILAGLIPLLALYCGIDPFKHSAISEFPDFKAFKVDLPDWSLVPNEKDNDNLLQRS 60

Query: 61  EIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIA 120
           EIKFLNQIQGPESMAFDPLGRGPYTG+ADGRI+FWDGLKW DFA+TS NRSE+C  KP  
Sbjct: 61  EIKFLNQIQGPESMAFDPLGRGPYTGIADGRIVFWDGLKWIDFAYTSPNRSEICERKPSP 120

Query: 121 TSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTN 180
            SYLKNEHICGRPLGLRF+KKTGDLYIADAYFGLMKVGPEGGLATSLATEAEG+ L FTN
Sbjct: 121 LSYLKNEHICGRPLGLRFNKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGIKLGFTN 180

Query: 181 DLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTK 240
           DLDIDDEGN+YFTDSST YQRR        +QL  S         ++ +GRVLKY+PTTK
Sbjct: 181 DLDIDDEGNIYFTDSSTQYQRRNF------MQLVFS---------SEHSGRVLKYNPTTK 225

Query: 241 QTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNV 300
            TTVL+RN+QFPNG+SLSKD +FFVFCEGS+GRL KYWL GEKAG  E  AILPG+PDNV
Sbjct: 226 GTTVLVRNVQFPNGVSLSKDGTFFVFCEGSMGRLSKYWLKGEKAGTTEVLAILPGFPDNV 285

Query: 301 RTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYS 360
           RTNE+G FWVA+HCRR+ YS++ ALYPK+R FLLKLPISAK HYL H+GGRLHA+AVKYS
Sbjct: 286 RTNEEGNFWVAVHCRRTYYSYICALYPKLRTFLLKLPISAKIHYLFHIGGRLHAVAVKYS 345

Query: 361 PEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDLS 406
           PEGK+LQ+LEDS+GKVVKAISEVEE+DGKLWMGSVLMPFV VY+L+
Sbjct: 346 PEGKLLQILEDSQGKVVKAISEVEERDGKLWMGSVLMPFVGVYNLA 391

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054234|ref|XP_002298158.1| predicted protein [Populus trichocarpa] gi|222845416|gb|EEE82963.1| predicted protein [Populus trichocarpa]

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 304/406 (74%), Positives = 343/406 (84%), Gaps = 15/406 (3%)

Query: 1   MTPRGFLGLVILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNS 60
           MTP G L  + LLL +YCG+DP K SAIS FPDF S+KV+MPPWS++P  KD++NLLQ S
Sbjct: 1   MTPTGILAGLFLLLTLYCGIDPWKQSAISGFPDFKSYKVEMPPWSILPKEKDEENLLQRS 60

Query: 61  EIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIA 120
           EIKFLNQIQGPESMAFDPLGRGPYTGVADGRILF+DG KWTDFA+TS+NRSE+CNP+P  
Sbjct: 61  EIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFYDGQKWTDFAYTSSNRSEICNPQPSP 120

Query: 121 TSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTN 180
            SYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSL+ EAEG+PLRFTN
Sbjct: 121 LSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLSNEAEGIPLRFTN 180

Query: 181 DLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTK 240
           DLDIDDEGN+YFTDSST YQRR        +QL  S          +++GRVLKY+PTTK
Sbjct: 181 DLDIDDEGNIYFTDSSTTYQRRNF------MQLVFS---------GENSGRVLKYNPTTK 225

Query: 241 QTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNV 300
           +TTVL+RNLQFPNG+SLSKD SFFVFCEGS+GRL KYWL GEKAG  E  AILPG+PDNV
Sbjct: 226 ETTVLVRNLQFPNGVSLSKDGSFFVFCEGSIGRLRKYWLKGEKAGTSEVLAILPGFPDNV 285

Query: 301 RTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYS 360
           RTNE+G FWVAIHCRRS Y+H+ A YP +R FLLKLPI  K  YL+ +GG  H + VKYS
Sbjct: 286 RTNEEGNFWVAIHCRRSFYTHINAQYPNLRTFLLKLPIPMKIQYLLQIGGWPHGLVVKYS 345

Query: 361 PEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDLS 406
           PEGK+LQ+LEDS+GKVVKAISEVEEKDGKLWMGSVLM FV VY+L+
Sbjct: 346 PEGKLLQILEDSQGKVVKAISEVEEKDGKLWMGSVLMRFVGVYNLA 391

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436102|ref|XP_002278088.1| PREDICTED: adipocyte plasma membrane-associated protein-like isoform 1 [Vitis vinifera]

 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 296/405 (73%), Positives = 344/405 (84%), Gaps = 15/405 (3%)

Query: 1   MTPRGFLGLVILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNS 60
           MTP G L  + LLLA+YCG+DPLKHS+I+ FP+F +H V+MPPWS +P  KDD+NLLQ +
Sbjct: 1   MTPGGLLAALFLLLALYCGIDPLKHSSIANFPEFEAHLVEMPPWSEVPAAKDDRNLLQKA 60

Query: 61  EIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIA 120
           EIKFLNQ+QGPES+AFDPLGRGPYTGVADGRILFW+G  W+DFA+TS NRSELC+PKP  
Sbjct: 61  EIKFLNQVQGPESVAFDPLGRGPYTGVADGRILFWNGEAWSDFAYTSPNRSELCDPKPSP 120

Query: 121 TSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTN 180
            SYLKNEHICGRPLGLRF+K+TGDLYIAD+Y GLMKVGPEGGLATSL TEA+GVPLRFTN
Sbjct: 121 LSYLKNEHICGRPLGLRFNKRTGDLYIADSYLGLMKVGPEGGLATSLVTEADGVPLRFTN 180

Query: 181 DLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTK 240
           DLDIDD GN+YFTDSS+ YQRR        +QL  S         ++D+GR+LKYDP TK
Sbjct: 181 DLDIDDAGNIYFTDSSSKYQRRNF------MQLVFS---------SEDSGRLLKYDPLTK 225

Query: 241 QTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNV 300
           +TTVLLR LQFPNG+SLSKD SF V CEGS GRL KYWL G+KAG  E FAILPGYPDNV
Sbjct: 226 ETTVLLRGLQFPNGVSLSKDGSFLVLCEGSPGRLVKYWLKGDKAGTSEVFAILPGYPDNV 285

Query: 301 RTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYS 360
           RTNEKGEFWVAIHCRR++YS+L  LYPK+R FLLKLPI  +  YL+H+GGRLHA+ VKYS
Sbjct: 286 RTNEKGEFWVAIHCRRTMYSYLCGLYPKLRMFLLKLPIPTRYQYLLHIGGRLHAVVVKYS 345

Query: 361 PEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDL 405
           PEGK++++LEDS+GKVV+A+SEVEE++GKLWMGSVLMPFVAVY L
Sbjct: 346 PEGKLVKILEDSEGKVVRAVSEVEEREGKLWMGSVLMPFVAVYQL 390

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18390900|ref|NP_563818.1| strictosidine synthase-like 3 [Arabidopsis thaliana] gi|16930481|gb|AAL31926.1|AF419594_1 At1g08470/T27G7_9 [Arabidopsis thaliana] gi|17381182|gb|AAL36403.1| unknown protein [Arabidopsis thaliana] gi|21436203|gb|AAM51389.1| unknown protein [Arabidopsis thaliana] gi|332190175|gb|AEE28296.1| strictosidine synthase-like 3 [Arabidopsis thaliana]

 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 277/399 (69%), Positives = 330/399 (82%), Gaps = 15/399 (3%)

Query: 7   LGLVILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNSEIKFLN 66
           L  + L+ A+YC +DP  HS+IS+FPDF ++K+DMPP S +P  +D +NLLQNSEI+FLN
Sbjct: 6   LAKIFLVFAIYCAIDPFSHSSISKFPDFKTYKIDMPPLSSLPKERDRQNLLQNSEIRFLN 65

Query: 67  QIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKN 126
           ++QGPES+AFDP GRGPYTGVADGRILFW+G +WTDFA+TSNNRSELC+PKP    YLK+
Sbjct: 66  EVQGPESIAFDPQGRGPYTGVADGRILFWNGTRWTDFAYTSNNRSELCDPKPSLLDYLKD 125

Query: 127 EHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD 186
           E ICGRPLGLRFDKK GDLYIADAY G+MKVGPEGGLATS+  EA+GVPLRFTNDLDIDD
Sbjct: 126 EDICGRPLGLRFDKKNGDLYIADAYLGIMKVGPEGGLATSVTNEADGVPLRFTNDLDIDD 185

Query: 187 EGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL 246
           EGNVYFTDSS+ +QRR+       L + S           +D+GRVLKY+P TK+TT L+
Sbjct: 186 EGNVYFTDSSSFFQRRKFM-----LLIVSG----------EDSGRVLKYNPKTKETTTLV 230

Query: 247 RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKG 306
           RNLQFPNGLSL KD SFF+FCEGS+GRL KYWL GEKAG  E  A+L G+PDN+RTN+ G
Sbjct: 231 RNLQFPNGLSLGKDGSFFIFCEGSIGRLRKYWLKGEKAGTSEVVALLHGFPDNIRTNKDG 290

Query: 307 EFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKIL 366
           +FWVA+HC R++++HLMA YP++R F LKLPIS K  YL+ VGG  HA+AVKYS EGK+L
Sbjct: 291 DFWVAVHCHRNIFTHLMAHYPRVRKFFLKLPISVKFQYLLQVGGWPHAVAVKYSEEGKVL 350

Query: 367 QVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDL 405
           +VLEDSKGKVVKA+SEVEEKDGKLWMGSVLM F+AVYDL
Sbjct: 351 KVLEDSKGKVVKAVSEVEEKDGKLWMGSVLMSFIAVYDL 389

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436104|ref|XP_002278122.1| PREDICTED: adipocyte plasma membrane-associated protein-like isoform 3 [Vitis vinifera]

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 287/405 (70%), Positives = 335/405 (82%), Gaps = 25/405 (6%)

Query: 1   MTPRGFLGLVILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNS 60
           MTP G L  + LLLA+YCG+DPLKHS+I+ FP+F +H V+MPPWS +P  KDD+NLLQ +
Sbjct: 1   MTPGGLLAALFLLLALYCGIDPLKHSSIANFPEFEAHLVEMPPWSEVPAAKDDRNLLQKA 60

Query: 61  EIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIA 120
           EIKFLNQ+QGPES+AFDPLGRGPYTGVADGRILFW+G  W+DFA+TS NR +        
Sbjct: 61  EIKFLNQVQGPESVAFDPLGRGPYTGVADGRILFWNGEAWSDFAYTSPNRGDC------- 113

Query: 121 TSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTN 180
              LKNEHICGRPLGLRF+K+TGDLYIAD+Y GLMKVGPEGGLATSL TEA+GVPLRFTN
Sbjct: 114 ---LKNEHICGRPLGLRFNKRTGDLYIADSYLGLMKVGPEGGLATSLVTEADGVPLRFTN 170

Query: 181 DLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTK 240
           DLDIDD GN+YFTDSS+ YQRR        +QL  S         ++D+GR+LKYDP TK
Sbjct: 171 DLDIDDAGNIYFTDSSSKYQRRNF------MQLVFS---------SEDSGRLLKYDPLTK 215

Query: 241 QTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNV 300
           +TTVLLR LQFPNG+SLSKD SF V CEGS GRL KYWL G+KAG  E FAILPGYPDNV
Sbjct: 216 ETTVLLRGLQFPNGVSLSKDGSFLVLCEGSPGRLVKYWLKGDKAGTSEVFAILPGYPDNV 275

Query: 301 RTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYS 360
           RTNEKGEFWVAIHCRR++YS+L  LYPK+R FLLKLPI  +  YL+H+GGRLHA+ VKYS
Sbjct: 276 RTNEKGEFWVAIHCRRTMYSYLCGLYPKLRMFLLKLPIPTRYQYLLHIGGRLHAVVVKYS 335

Query: 361 PEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDL 405
           PEGK++++LEDS+GKVV+A+SEVEE++GKLWMGSVLMPFVAVY L
Sbjct: 336 PEGKLVKILEDSEGKVVRAVSEVEEREGKLWMGSVLMPFVAVYQL 380

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849156|ref|XP_002892459.1| strictosidine synthase family protein [Arabidopsis lyrata subsp. lyrata] gi|297338301|gb|EFH68718.1| strictosidine synthase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  585 bits (1509), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 274/396 (69%), Positives = 329/396 (83%), Gaps = 15/396 (3%)

Query: 10  VILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNSEIKFLNQIQ 69
           + L+ A+YC LDP  HS+IS+FPDF ++K+DMPP S +P  +D +NLLQNSEI+FLN++Q
Sbjct: 9   ISLVFAIYCALDPFSHSSISKFPDFKTYKIDMPPLSSLPKERDRENLLQNSEIRFLNEVQ 68

Query: 70  GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHI 129
           GPES+AFDP GRGPYTGVADGRILFW+G +W DFA+TSNNRSELC+PKP    YLK+E I
Sbjct: 69  GPESIAFDPQGRGPYTGVADGRILFWNGTRWIDFAYTSNNRSELCDPKPSLLDYLKDEDI 128

Query: 130 CGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN 189
           CGRPLGLRFDKKTGDLYIADAY G+MKVGPEGGLATS+  EA+GVPLRFTNDLDIDD+GN
Sbjct: 129 CGRPLGLRFDKKTGDLYIADAYLGIMKVGPEGGLATSVTNEADGVPLRFTNDLDIDDQGN 188

Query: 190 VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNL 249
           VYFTDSS+ +QRR+       L + S           +D+GRVLKY+P TK+TT L+RNL
Sbjct: 189 VYFTDSSSFFQRRKFM-----LLIVSG----------EDSGRVLKYNPKTKETTTLVRNL 233

Query: 250 QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFW 309
           QFPNGLSL KD SFF+FCEGS+GRL KYWL GEKAG  E  A+L G+PDN+RTN+ G+FW
Sbjct: 234 QFPNGLSLGKDGSFFIFCEGSIGRLRKYWLKGEKAGTSEVVALLHGFPDNIRTNKDGDFW 293

Query: 310 VAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVL 369
           VA+HC R++++H+MA +P++R F LKLPIS K  YL+ VGG  HA+AVKYS EGK+L+VL
Sbjct: 294 VAVHCHRNIFTHVMAHHPRVRKFFLKLPISVKFQYLLQVGGWPHAVAVKYSEEGKVLKVL 353

Query: 370 EDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDL 405
           EDSKGKVVKA+SEVEEKDGKLWMGSVLM F+AVYDL
Sbjct: 354 EDSKGKVVKAVSEVEEKDGKLWMGSVLMSFIAVYDL 389

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449530714|ref|XP_004172338.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Cucumis sativus]

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 275/395 (69%), Positives = 324/395 (82%), Gaps = 15/395 (3%)

Query: 11  ILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNSEIKFLNQIQG 70
             LLA+YC +DP KHSAI+ FPDF ++ V++P WS IPT +D +NLLQ S I F +Q+QG
Sbjct: 22  FFLLALYCAIDPFKHSAIANFPDFETYYVELPSWSQIPTERDTENLLQKSTIMFKDQVQG 81

Query: 71  PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHIC 130
           PES+AFD LGRGPYTGVADGR+LFW+G  WTDFA+TS NRSE+C+PKP    Y KNEHIC
Sbjct: 82  PESVAFDSLGRGPYTGVADGRVLFWNGESWTDFAYTSPNRSEICDPKPSIFGYAKNEHIC 141

Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
           GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSL+TEAEGVP +F NDLD+DDEGNV
Sbjct: 142 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLSTEAEGVPFKFINDLDLDDEGNV 201

Query: 191 YFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQ 250
           YFTDSST Y+RR        +Q+  S          ++TGR+LKY+  T +TTVL+R+L 
Sbjct: 202 YFTDSSTKYERRNF------IQVVFS---------AENTGRLLKYNAATGETTVLVRDLH 246

Query: 251 FPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWV 310
           FPNG+SLSKD SFF+FCEG  GRL KYWL GEKAG  E FAILPG+PDNVRTN+KG+FWV
Sbjct: 247 FPNGVSLSKDGSFFLFCEGGKGRLRKYWLKGEKAGTNELFAILPGFPDNVRTNDKGDFWV 306

Query: 311 AIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLE 370
           A+H R S  +HL A YPK+R  LLKLPISAK  +L+HVGGR HA+AVKYSPEGK+LQ+LE
Sbjct: 307 AVHSRHSTLAHLEAKYPKLRKILLKLPISAKIQFLLHVGGRPHAVAVKYSPEGKLLQILE 366

Query: 371 DSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDL 405
           D++GKVVKA+SEVEEKDGKLW+GSVLM F+AVY+L
Sbjct: 367 DTQGKVVKAVSEVEEKDGKLWIGSVLMSFIAVYEL 401

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439172|ref|XP_004137361.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Cucumis sativus]

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 275/395 (69%), Positives = 324/395 (82%), Gaps = 15/395 (3%)

Query: 11  ILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNSEIKFLNQIQG 70
             LLA+YC +DP KHSAI+ FPDF ++ V++P WS IPT +D +NLLQ S I F +Q+QG
Sbjct: 22  FFLLALYCAIDPFKHSAIANFPDFETYYVELPSWSQIPTERDTENLLQKSTIMFKDQVQG 81

Query: 71  PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHIC 130
           PES+AFD LGRGPYTGVADGR+LFW+G  WTDFA+TS NRSE+C+PKP    Y KNEHIC
Sbjct: 82  PESVAFDSLGRGPYTGVADGRVLFWNGESWTDFAYTSPNRSEICDPKPSIFGYAKNEHIC 141

Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
           GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSL+TEAEGVP +F NDLD+DDEGNV
Sbjct: 142 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLSTEAEGVPFKFINDLDLDDEGNV 201

Query: 191 YFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQ 250
           YFTDSST Y+RR        +Q+  S          ++TGR+LKY+  T +TTVL+R+L 
Sbjct: 202 YFTDSSTKYERRNF------IQVVFS---------AENTGRLLKYNAATGETTVLVRDLH 246

Query: 251 FPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWV 310
           FPNG+SLSKD SFF+FCEG  GRL KYWL GEKAG  E FAILPG+PDNVRTN+KG+FWV
Sbjct: 247 FPNGVSLSKDGSFFLFCEGGKGRLRKYWLKGEKAGTNELFAILPGFPDNVRTNDKGDFWV 306

Query: 311 AIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLE 370
           A+H R S  +HL A YPK+R  LLKLPISAK  +L+HVGGR HA+AVKYSPEGK+LQ+LE
Sbjct: 307 AVHSRHSTLAHLEAEYPKLRKILLKLPISAKIQFLLHVGGRPHAVAVKYSPEGKLLQILE 366

Query: 371 DSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDL 405
           D++GKVVKA+SEVEEKDGKLW+GSVLM F+AVY+L
Sbjct: 367 DTQGKVVKAVSEVEEKDGKLWIGSVLMSFIAVYEL 401

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357453305|ref|XP_003596929.1| Adipocyte plasma membrane-associated protein [Medicago truncatula] gi|355485977|gb|AES67180.1| Adipocyte plasma membrane-associated protein [Medicago truncatula]

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 278/408 (68%), Positives = 324/408 (79%), Gaps = 17/408 (4%)

Query: 1   MTPRGFLGLVILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNS 60
           MT    L +VILL A+YCGLDP K S I  FPDF  HK+++P WS +P   D  NLL  S
Sbjct: 1   MTLTRGLAIVILLFALYCGLDPFKQSPIQGFPDFEVHKINLPSWSEVPLDHDKDNLLLKS 60

Query: 61  EIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIA 120
           E+ F+NQ+QGPES+AFD  GRGPYTGVADGRILFW+GL W DFA+TS NRSELCN K  A
Sbjct: 61  ELMFVNQVQGPESIAFDSHGRGPYTGVADGRILFWNGLSWIDFAYTSPNRSELCNLKASA 120

Query: 121 T--SYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRF 178
           T  SY++ E ICGRPLGLRFDKKTGDLYIADAYFGLMKVGP+GG ATSLATEAEGVP RF
Sbjct: 121 TPLSYVETEDICGRPLGLRFDKKTGDLYIADAYFGLMKVGPQGGFATSLATEAEGVPFRF 180

Query: 179 TNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPT 238
           TND+DID EGNVYFTDSST YQRR        +QL  S           ++GRVLKY+  
Sbjct: 181 TNDVDIDTEGNVYFTDSSTKYQRRNF------IQLILS---------GDNSGRVLKYNSA 225

Query: 239 TKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPD 298
           TK+TTVL+RN+QFPNG+SLSKD SFFVF EG +GRL KYWL G+KAG LE  AILPG+ D
Sbjct: 226 TKETTVLVRNIQFPNGISLSKDGSFFVFSEGVIGRLCKYWLKGDKAGTLEILAILPGFAD 285

Query: 299 NVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVK 358
           NVR NE G+FWVAIHCRR +YS++ ALYPKIR  +LKLPI  +  YL+H+GG++HA  VK
Sbjct: 286 NVRVNENGDFWVAIHCRRYMYSYINALYPKIRKAILKLPIPTRIQYLLHIGGKMHAAVVK 345

Query: 359 YSPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDLS 406
           YSP+GK+LQ+LED++GKVVKA+SEVEEKDGKLW+GSVLMPF+AVY L+
Sbjct: 346 YSPDGKLLQILEDNEGKVVKAVSEVEEKDGKLWIGSVLMPFIAVYHLT 393

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517675|ref|XP_003527512.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Glycine max]

 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 281/418 (67%), Positives = 323/418 (77%), Gaps = 30/418 (7%)

Query: 3   PRGFLGLVILLLAM-------------YCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPT 49
           P  FL  V+L  AM             YCGLDP +HS I+ FPDF   +VDMP WS +PT
Sbjct: 38  PSSFLFPVLLCAAMGRGLGVVLVLLAVYCGLDPFQHSPIAHFPDFEVKRVDMPAWSEVPT 97

Query: 50  VKDDKNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNN 109
            +D  NLLQ SEIKF NQ+QGPES+AFDPLGRGPYTG+ADG I+FW+G  W  FA+TS N
Sbjct: 98  DQDKHNLLQKSEIKFANQVQGPESIAFDPLGRGPYTGLADGTIVFWNGHSWLHFAYTSPN 157

Query: 110 RSELCNPKPIAT--SYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSL 167
           RSE+CNP   AT  SY+KNEHICGRPLGLRFDKKTGDLYIADAYFGL+KVGPEGGLATSL
Sbjct: 158 RSEICNPIASATPFSYVKNEHICGRPLGLRFDKKTGDLYIADAYFGLLKVGPEGGLATSL 217

Query: 168 ATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK 227
            TEAEG+PLRFTND+D+D EGNVYFT+SS  Y RR        LQL  S           
Sbjct: 218 VTEAEGIPLRFTNDVDVDTEGNVYFTESSALYPRRNF------LQLVFS---------GD 262

Query: 228 DTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNL 287
           D+GRVLKY+  TK+TTVL+RN+QFPNG+SLSKD SFFVFCEG VGRL KYWL GEKAG  
Sbjct: 263 DSGRVLKYNLATKETTVLVRNIQFPNGISLSKDGSFFVFCEGVVGRLRKYWLKGEKAGTS 322

Query: 288 EAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIH 347
           E  AILPGYPDNVR NE G+FWVA+H RR +Y++   +YPK+R  +LKLPI  K HYL+ 
Sbjct: 323 EILAILPGYPDNVRVNEDGDFWVALHSRRYMYAYYNGIYPKMRKIILKLPIPIKIHYLLQ 382

Query: 348 VGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDL 405
           +GGR HA  ++YSPEGK+LQ+LEDS+GKVVKA+SEVEEKDGKLWMGSVLMPFVAVY+L
Sbjct: 383 IGGRQHAAVIRYSPEGKLLQILEDSEGKVVKAVSEVEEKDGKLWMGSVLMPFVAVYNL 440

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	406
TAIR|locus:2201841	390	SSL3 "strictosidine synthase-l	0.945	0.984	0.694	1.3e-153
TAIR|locus:504956439	395	AT5G22020 [Arabidopsis thalian	0.933	0.959	0.687	3.1e-147
TAIR|locus:2080575	374	AT3G57030 [Arabidopsis thalian	0.650	0.705	0.55	3.1e-76
TAIR|locus:2097488	403	LAP3 "LESS ADHERENT POLLEN 3"	0.862	0.868	0.448	9.3e-75
TAIR|locus:2080660	376	AT3G57010 [Arabidopsis thalian	0.640	0.691	0.469	5e-60
TAIR|locus:2040312	376	SSL2 "strictosidine synthase-l	0.773	0.835	0.425	1e-59
TAIR|locus:2040297	394	SSL1 "strictosidine synthase-l	0.650	0.670	0.446	1.7e-59
TAIR|locus:2080565	370	AT3G57020 [Arabidopsis thalian	0.630	0.691	0.451	8.4e-58
TAIR|locus:2031496	325	AT1G74010 [Arabidopsis thalian	0.546	0.683	0.406	1.8e-44
TAIR|locus:2031486	335	SS2 "strictosidine synthase 2"	0.546	0.662	0.392	5.9e-44

TAIR|locus:2201841 SSL3 "strictosidine synthase-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1498 (532.4 bits), Expect = 1.3e-153, P = 1.3e-153
 Identities = 277/399 (69%), Positives = 330/399 (82%)

Query:     7 LGLVILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNSEIKFLN 66
             L  + L+ A+YC +DP  HS+IS+FPDF ++K+DMPP S +P  +D +NLLQNSEI+FLN
Sbjct:     6 LAKIFLVFAIYCAIDPFSHSSISKFPDFKTYKIDMPPLSSLPKERDRQNLLQNSEIRFLN 65

Query:    67 QIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKN 126
             ++QGPES+AFDP GRGPYTGVADGRILFW+G +WTDFA+TSNNRSELC+PKP    YLK+
Sbjct:    66 EVQGPESIAFDPQGRGPYTGVADGRILFWNGTRWTDFAYTSNNRSELCDPKPSLLDYLKD 125

Query:   127 EHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD 186
             E ICGRPLGLRFDKK GDLYIADAY G+MKVGPEGGLATS+  EA+GVPLRFTNDLDIDD
Sbjct:   126 EDICGRPLGLRFDKKNGDLYIADAYLGIMKVGPEGGLATSVTNEADGVPLRFTNDLDIDD 185

Query:   187 EGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL 246
             EGNVYFTDSS+ +QRR+       L + S           +D+GRVLKY+P TK+TT L+
Sbjct:   186 EGNVYFTDSSSFFQRRKFM-----LLIVSG----------EDSGRVLKYNPKTKETTTLV 230

Query:   247 RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKG 306
             RNLQFPNGLSL KD SFF+FCEGS+GRL KYWL GEKAG  E  A+L G+PDN+RTN+ G
Sbjct:   231 RNLQFPNGLSLGKDGSFFIFCEGSIGRLRKYWLKGEKAGTSEVVALLHGFPDNIRTNKDG 290

Query:   307 EFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKIL 366
             +FWVA+HC R++++HLMA YP++R F LKLPIS K  YL+ VGG  HA+AVKYS EGK+L
Sbjct:   291 DFWVAVHCHRNIFTHLMAHYPRVRKFFLKLPISVKFQYLLQVGGWPHAVAVKYSEEGKVL 350

Query:   367 QVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDL 405
             +VLEDSKGKVVKA+SEVEEKDGKLWMGSVLM F+AVYDL
Sbjct:   351 KVLEDSKGKVVKAVSEVEEKDGKLWMGSVLMSFIAVYDL 389

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:504956439 AT5G22020 [Arabidopsis thaliana (taxid:3702)]

 Score = 1438 (511.3 bits), Expect = 3.1e-147, P = 3.1e-147
 Identities = 271/394 (68%), Positives = 318/394 (80%)

Query:    12 LLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNSEIKFLNQIQGP 71
             L LA+YC +DP  H AIS+FP+FVSH+V  P    +P  +D +N LQ S+I F NQIQGP
Sbjct:    17 LSLALYCSIDPFHHCAISDFPNFVSHEVISPRPDEVPWERDSQNSLQKSKILFFNQIQGP 76

Query:    72 ESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICG 131
             ES+AFD LGRGPYTGVADGR+LFWDG KW DFA+TS+NRSE+C+PKP A SYL+NEHICG
Sbjct:    77 ESVAFDSLGRGPYTGVADGRVLFWDGEKWIDFAYTSSNRSEICDPKPSALSYLRNEHICG 136

Query:   132 RPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVY 191
             RPLGLRFDK+TGDLYIADAY GL+KVGPEGGLAT L TEAEGVPL FTNDLDI D+G VY
Sbjct:   137 RPLGLRFDKRTGDLYIADAYMGLLKVGPEGGLATPLVTEAEGVPLGFTNDLDIADDGTVY 196

Query:   192 FTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQF 251
             FTDSS +YQRR        LQL  S  D        +TGRVLKYDP  K+  VL+ NLQF
Sbjct:   197 FTDSSISYQRRNF------LQLVFS-GD--------NTGRVLKYDPVAKKAVVLVSNLQF 241

Query:   252 PNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVA 311
             PNG+S+S+D SFFVFCEG +G L +YWL GEKAG  + FA LPG+PDNVRTN+KGEFWVA
Sbjct:   242 PNGVSISRDGSFFVFCEGDIGSLRRYWLKGEKAGTTDVFAYLPGHPDNVRTNQKGEFWVA 301

Query:   312 IHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLED 371
             +HCRR+ YS+LMA YPK+R F+L+LPI+A+THY   +G R H + VKYSPEGK++ VLED
Sbjct:   302 LHCRRNYYSYLMARYPKLRMFILRLPITARTHYSFQIGLRPHGLVVKYSPEGKLMHVLED 361

Query:   372 SKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDL 405
             S+GKVV+++SEVEEKDGKLWMGSVLM FVAVYDL
Sbjct:   362 SEGKVVRSVSEVEEKDGKLWMGSVLMNFVAVYDL 395

GO:0005576 "extracellular region" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2080575 AT3G57030 [Arabidopsis thaliana (taxid:3702)]

 Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
 Identities = 154/280 (55%), Positives = 198/280 (70%)

Query:   127 EHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD 186
             EH+CGRPLGLRFDKKTGDLYIADAYFGL+ VGP GGLA  L TEAEG P RFTNDLDID+
Sbjct:   110 EHVCGRPLGLRFDKKTGDLYIADAYFGLLVVGPAGGLAKPLVTEAEGQPFRFTNDLDIDE 169

Query:   187 EGNV-YFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVL 245
             + +V YFTD+S  +QRRQ         L + LN      + K TGR +KYD ++K+ TVL
Sbjct:   170 QEDVIYFTDTSARFQRRQF--------LAAVLN------VDK-TGRFIKYDRSSKKATVL 214

Query:   246 LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEK 305
             L+ L F NG++LSKD+SF +  E +  ++ + WL G  AG  + FA LPG+PDN+R N  
Sbjct:   215 LQGLAFANGVALSKDRSFVLVVETTTCKILRLWLSGPNAGTHQVFAELPGFPDNIRRNSN 274

Query:   306 GEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKI 365
             GEFWVA+H ++ L++ L       R  +L+LPIS +  + +  GG  HA A+K S  GK+
Sbjct:   275 GEFWVALHSKKGLFAKLSLTQTWFRDLVLRLPISPQRLHSLFTGGIPHATAIKLSESGKV 334

Query:   366 LQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDL 405
             L+VLED +GK ++ ISEVEEKDGKLW+GSVL+PF+ VYDL
Sbjct:   335 LEVLEDKEGKTLRFISEVEEKDGKLWIGSVLVPFLGVYDL 374

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2097488 LAP3 "LESS ADHERENT POLLEN 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
 Identities = 170/379 (44%), Positives = 232/379 (61%)

Query:    10 VILLLAMYCGLDPLKHSAIS--EFPDFVSHKVDMPPWSLI--PTVKDDKNLLQN-SEIKF 64
             +I L  ++  +DP   S I   EF   V H+V   P+  +     +D+ + L N  +++F
Sbjct:    22 IIALSVLFIAIDPFHMSPIGGREFKP-VKHEV--APYKEVMGSWPRDNLSRLGNHGKLEF 78

Query:    65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDG--LKWTDFAF-TSNNRSELCNPKPIAT 121
             ++Q+ GPES+ FD LGRGPYTG+ADGR++ W G  + W  F+  TS    E C     +T
Sbjct:    79 VDQVFGPESLEFDSLGRGPYTGLADGRVVRWMGEAIGWETFSVVTSKWSEEACVRGVDST 138

Query:   122 S--YLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFT 179
             +    K+E +CGRPLGLRF K+TG+LYIADAY+GL+ VGPEGG+AT LAT  EG P+ F 
Sbjct:   139 TNKQWKHEKLCGRPLGLRFHKETGNLYIADAYYGLLVVGPEGGIATPLATHVEGKPILFA 198

Query:   180 NDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTT 239
             NDLDI   G+++FTD+S  Y R               L   S       TGR+L+YDP T
Sbjct:   199 NDLDIHRNGSIFFTDTSKRYDRAN--------HFFILLEGES-------TGRLLRYDPPT 243

Query:   240 KQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDN 299
             K T ++L  L FPNG+ LSKD+SF +F E +  RL KYWL G K G +E  A LPG+PDN
Sbjct:   244 KTTHIVLEGLAFPNGIQLSKDQSFLLFTETTNCRLVKYWLEGPKMGEVEVVADLPGFPDN 303

Query:   300 VRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKY 359
             VR NE+G+FWVAI C R+    ++   P IR    +LPI  K      +G R++ +  ++
Sbjct:   304 VRINEEGQFWVAIDCCRTPAQEVLTNNPWIRSIYFRLPIPMKL-LAKTMGMRMYTVISRF 362

Query:   360 SPEGKILQVLEDSKGKVVK 378
               EGK+L+VLED +GKV+K
Sbjct:   363 DEEGKVLEVLEDRQGKVMK 381

GO:0005739 "mitochondrion" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0010584 "pollen exine formation" evidence=RCA;IMP

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2080660 AT3G57010 [Arabidopsis thaliana (taxid:3702)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 132/281 (46%), Positives = 178/281 (63%)

Query:   130 CGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN 189
             CGRPLGL F++KTGDLYI D YFG+MKVGPEGGLA  +  EAEG  + F N  DID+E +
Sbjct:   108 CGRPLGLSFERKTGDLYICDGYFGVMKVGPEGGLAELVVDEAEGRKVMFANQGDIDEEED 167

Query:   190 V-YFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRN 248
             + YF DSS  Y  R +           SL+       TK  GRV++YD   K+  V++  
Sbjct:   168 IFYFNDSSDTYHFRDV--------FYVSLSG------TK-VGRVIRYDMKKKEAKVIMDK 212

Query:   249 LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEF 308
             L+ PNGL+LSK+ SF V CE S    H+ W+ G K+G  E FA LPG PDN+R    G+F
Sbjct:   213 LRLPNGLALSKNGSFVVTCESSTNICHRIWVKGPKSGTNEVFATLPGSPDNIRRTPTGDF 272

Query:   309 WVAIHCRRSLYSHLMALYPKI-RHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPE-GKIL 366
             WVA+HC+++L++  + ++  + R F+  + +    H++   GG+ H + VK S E G+IL
Sbjct:   273 WVALHCKKNLFTRAVLIHTWVGRFFMNTMKMETVIHFMN--GGKPHGIVVKLSGETGEIL 330

Query:   367 QVLEDSKGKVVKAISEV-EEKDGKLWMGSVLMPFVAVYDLS 406
             ++LEDS+GK VK +SE  E KDGKLW+GSV  P V V D S
Sbjct:   331 EILEDSEGKTVKYVSEAYETKDGKLWIGSVYWPAVWVLDTS 371

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2040312 SSL2 "strictosidine synthase-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
 Identities = 148/348 (42%), Positives = 197/348 (56%)

Query:    70 GPESMAFDPLGRGPYTGVADGRILFW--DGLKWTDFAFTSNNRSELCNPKPIATSYLKNE 127
             GPES  FD  G GPYTG++DGRI+ W  +  +W DFA T++ R     P      + + E
Sbjct:    51 GPESFVFDFFGDGPYTGLSDGRIVKWLANESRWIDFAVTTSAREGCEGPH----EHQRTE 106

Query:   128 HICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDE 187
             H+CGRPLGL FDK TGDLYIADAY GL+KVGP GG+AT +        LRFTN LDI+  
Sbjct:   107 HVCGRPLGLAFDKSTGDLYIADAYMGLLKVGPTGGVATQVLPRELNEALRFTNSLDINPR 166

Query:   188 -GNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL 246
              G VYFTDSS+ YQRR      I   +               TGR++KYD  TKQ T LL
Sbjct:   167 TGVVYFTDSSSVYQRRNY----IGAMMSGD-----------KTGRLMKYD-NTKQVTTLL 210

Query:   247 RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI-----GEKAGNLEAFAI-LPGYPDNV 300
              NL F NG++LS++  + +  E ++ R+ +YWL       +   N E FA  LPG+PDN+
Sbjct:   211 SNLAFVNGVALSQNGDYLLVVETAMCRILRYWLNETSVKSQSHDNYEIFAEGLPGFPDNI 270

Query:   301 RTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPIS-AKTHYL-IHVGGRLHAMAVK 358
             + + +G FWV ++ + S  +        +    L LP+   K H +     G  + MAV+
Sbjct:   271 KRSPRGGFWVGLNTKHSKLTKFAMSNAWLGRAALGLPVDWMKVHSVWARYNG--NGMAVR 328

Query:   359 YSPE-GKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDL 405
              S + G IL+V E        +ISEVEEKDG LW+GSV  PF  +Y +
Sbjct:   329 LSEDSGVILEVFEGKNENKWISISEVEEKDGTLWVGSVNTPFAGMYKI 376

GO:0005576 "extracellular region" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2040297 SSL1 "strictosidine synthase-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
 Identities = 126/282 (44%), Positives = 175/282 (62%)

Query:   125 KNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDI 184
             K E  CGRPLGL F+KK+GDLY  D Y G+MKVGP+GGLA  +  E EG  + F N +DI
Sbjct:   127 KVEPACGRPLGLSFEKKSGDLYFCDGYLGVMKVGPKGGLAEKVVDEVEGQKVMFANQMDI 186

Query:   185 DDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTT 243
             D+E + +YF DSS  Y    +        LC            + TGR ++YD  TK+  
Sbjct:   187 DEEEDAIYFNDSSDTYHFGDV----FYAFLCG-----------EKTGRAIRYDKKTKEAK 231

Query:   244 VLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTN 303
             V++  L FPNGL+LS D SF + CE     +H+YW  G  AG  + FA LPGY DN+R  
Sbjct:   232 VIMDRLHFPNGLALSIDGSFVLSCEVPTQLVHRYWAKGPNAGTRDIFAKLPGYADNIRRT 291

Query:   304 EKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPE- 362
             E G+FWVA+H +++ +S L  ++P +  F +K  +  +    +  GG+ HA+AVK S + 
Sbjct:   292 ETGDFWVALHSKKTPFSRLSMIHPWVGKFFIKT-LKMELLVFLFEGGKPHAVAVKLSGKT 350

Query:   363 GKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYD 404
             G+I+++LEDS+GK +K ISEV+E+DG+LW GSV +P V V D
Sbjct:   351 GEIMEILEDSEGKNMKFISEVQERDGRLWFGSVFLPSVWVLD 392

GO:0005576 "extracellular region" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

TAIR|locus:2080565 AT3G57020 [Arabidopsis thaliana (taxid:3702)]

 Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
 Identities = 127/281 (45%), Positives = 174/281 (61%)

Query:   130 CGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN 189
             CGRPLGL F+KKTGDLYI D Y GLMKVGPEGGLA  +  EAEG  + F N  DID+E +
Sbjct:   107 CGRPLGLTFEKKTGDLYICDGYLGLMKVGPEGGLAELIVDEAEGRKVMFANQGDIDEEED 166

Query:   190 V-YFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKD-TGRVLKYDPTTKQTTVLLR 247
             V YF DSS  Y  R                D   + ++ + +GRV++YD  TK+  V++ 
Sbjct:   167 VFYFNDSSDKYHFR----------------DVFFVAVSGERSGRVIRYDKKTKEAKVIMD 210

Query:   248 NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE 307
             NL   NGL+L+KD+SF + CE     +H+YW+ G KAG  + FA +PGYPDN+R    G+
Sbjct:   211 NLVCNNGLALNKDRSFLITCESGTSLVHRYWIKGPKAGTRDIFAKVPGYPDNIRLTSTGD 270

Query:   308 FWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLI-HVGG-RLHAMAVKYSPE-GK 364
             FW+ +HC+++L   L+  Y  +   + K   + K  Y+I  + G + H +AVK S E G+
Sbjct:   271 FWIGLHCKKNLIGRLIVKYKWLGKLVEK---TMKLEYVIAFINGFKPHGVAVKISGETGE 327

Query:   365 ILQVLEDSKGKVVKAISEVEEKD-GKLWMGSVLMPFVAVYD 404
             +L++LED +GK +K +SE  E+D GKLW GSV  P V V D
Sbjct:   328 VLELLEDKEGKTMKYVSEAYERDDGKLWFGSVYWPAVWVLD 368

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005773 "vacuole" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:2031496 AT1G74010 [Arabidopsis thaliana (taxid:3702)]

 Score = 410 (149.4 bits), Expect = 1.8e-44, Sum P(2) = 1.8e-44
 Identities = 100/246 (40%), Positives = 133/246 (54%)

Query:    70 GPESMAFDPLGRGPYTGVADGRIL-FWDGLKWTDFA-FTSNNRSELCNPKPIATSYLKNE 127
             GPES AFD  G G YTGV+ G+IL +  G  + DFA  T ++ S  CN   + T++    
Sbjct:    37 GPESFAFDSTG-GFYTGVSGGKILKYVPGKGYVDFAQITDSSNSAWCNGA-LGTAFAGK- 93

Query:   128 HICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDE 187
               CGRP G+  + KTGDLY+ADA  GL  + P GGLAT LA   +G P +F + LD+D  
Sbjct:    94 --CGRPAGIALNSKTGDLYVADAPLGLHVISPAGGLATKLADSVDGKPFKFLDGLDVDPT 151

Query:   188 -GNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL 246
              G VYFT  S+ +  R++        +   L D S        G++ KYDP TK  T L+
Sbjct:   152 TGVVYFTSFSSKFGPREVL-------IAVGLKDAS--------GKLFKYDPATKAVTELM 196

Query:   247 RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVR-TNEK 305
               L    G ++S D SF +  E     + KYW+ G KAG +E F+ L   PDN+R     
Sbjct:   197 EGLSGAAGCAVSSDGSFVLVSEFIKSNIKKYWIKGPKAGTIEDFSSLVSNPDNIRRVGST 256

Query:   306 GEFWVA 311
             G FWVA
Sbjct:   257 GNFWVA 262

GO:0005576 "extracellular region" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006865 "amino acid transport" evidence=RCA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2031486 SS2 "strictosidine synthase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 403 (146.9 bits), Expect = 5.9e-44, Sum P(2) = 5.9e-44
 Identities = 97/247 (39%), Positives = 136/247 (55%)

Query:    70 GPESMAFDPLGRGPYTGVADGRIL-FWDGLKWTDFA-FTSNNRSELCNPKPIATSYLKNE 127
             GPE+ AFD  G+G YTGV+ G+IL +     + DFA  T ++ S  C+   I T+     
Sbjct:    38 GPEAFAFDSTGKGFYTGVSGGKILKYLPETGYVDFAQITESSNSSWCDGT-IGTALAGR- 95

Query:   128 HICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDE 187
               CGRP G+ F++KTGDLY+ADA  GL  + P GGLAT +    +G P +F + LD+D  
Sbjct:    96 --CGRPAGIAFNEKTGDLYVADAPLGLHVISPAGGLATKITDSVDGKPFKFLDGLDVDPT 153

Query:   188 -GNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKD-TGRVLKYDPTTKQTTVL 245
              G VYFT  S+ +          P+Q+  +L         KD TG++ KYDP+TK  TVL
Sbjct:   154 TGVVYFTSFSSRFS---------PIQVLIALG-------LKDATGKLYKYDPSTKVVTVL 197

Query:   246 LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNV-RTNE 304
             +  L    G ++S D SF +  + +   + +YW+ G KAG+ E F      PDN+ R   
Sbjct:   198 MEGLSGSAGCAVSSDGSFVLVSQFTKSNIKRYWIKGPKAGSSEDFTNSVSNPDNIKRIGS 257

Query:   305 KGEFWVA 311
              G FWVA
Sbjct:   258 TGNFWVA 264

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA;TAS

GO:0005773 "vacuole" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9D7N9	APMAP_MOUSE	No assigned EC number	0.3103	0.8965	0.8771	yes	no
Q7TP48	APMAP_RAT	No assigned EC number	0.3128	0.8965	0.9680	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.1	LOW CONFIDENCE prediction!
3rd Layer	4.3.3	0.766
3rd Layer	4.3.3.2	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.I.9767.1	hypothetical protein (385 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00280038	hypothetical protein (145 aa)			•						0.504
	eugene3.85300001	hypothetical protein (161 aa)			•						0.451

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	406
pfam03088	89	pfam03088, Str_synth, Strictosidine synthase	1e-28
COG3386	307	COG3386, COG3386, Gluconolactonase [Carbohydrate t	7e-18
pfam08450	245	pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like re	1e-08

>gnl|CDD|111929 pfam03088, Str_synth, Strictosidine synthase

 Score =  107 bits (268), Expect = 1e-28
 Identities = 48/104 (46%), Positives = 63/104 (60%), Gaps = 16/104 (15%)

Query: 180 NDLDIDDE-GNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPT 238
           N LD+D E G +YFTDSS+ Y RRQ+        L               TGR++KYDP+
Sbjct: 1   NALDVDPETGVLYFTDSSSRYDRRQVIFA----MLEG-----------DKTGRLMKYDPS 45

Query: 239 TKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE 282
           TK T VLL++L FPNG++LS D SF +FCE  + R+ KYW+ G 
Sbjct: 46  TKVTKVLLKDLYFPNGIALSPDGSFVLFCETPMKRISKYWIKGP 89

Strictosidine synthase (E.C. 4.3.3.2) is a key enzyme in alkaloid biosynthesis. It catalyzes the condensation of tryptamine with secologanin to form strictosidine. Length = 89

>gnl|CDD|225921 COG3386, COG3386, Gluconolactonase [Carbohydrate transport and metabolism]

 Score = 83.2 bits (206), Expect = 7e-18
 Identities = 48/187 (25%), Positives = 68/187 (36%), Gaps = 30/187 (16%)

Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPE-GGLATSLATEAEGVPLRFTNDLDIDDEGN 189
           G   G   D   G   IA    G+  + P+ GG  T LA   +G+PL   ND  +D +G 
Sbjct: 67  GFSSGALIDA--GGRLIA-CEHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR 123

Query: 190 VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNL 249
           ++F D                                + TG + + DP      +L  +L
Sbjct: 124 IWFGDMG---------------------YFDLGKSEERPTGSLYRVDPDGGVVRLLDDDL 162

Query: 250 QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEK--AGNLEAFAIL---PGYPDNVRTNE 304
             PNGL+ S D       +    R+H+Y L       G    F      PG PD +  + 
Sbjct: 163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA 222

Query: 305 KGEFWVA 311
            G  WVA
Sbjct: 223 DGNLWVA 229

Length = 307

>gnl|CDD|219847 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region

 Score = 54.9 bits (133), Expect = 1e-08
 Identities = 44/186 (23%), Positives = 67/186 (36%), Gaps = 33/186 (17%)

Query: 133 PLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLAT-EAEGVPLRFTNDLDIDDEGNVY 191
           P+G    +  G L +A    GL  +  + G  T+LA  E +    RF ND  +D +G  +
Sbjct: 42  PVGAIALRDDGRLIVALKR-GLALLDLDTGELTTLADLEPDEPLNRF-NDGKVDPDGRFW 99

Query: 192 FTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQF 251
           F           M  +  P                 + G + + DP  K    +L  +  
Sbjct: 100 FGT---------MGFDIAP---------------GGEPGALYRLDPDGK-VERVLDGITI 134

Query: 252 PNGLSLSKDKSFFVFCEGSVGRLHKY--WLIGEKAGNLEAFAIL---PGYPDNVRTNEKG 306
            NGL+ S D     F +    R+  +     G    N   FA      G PD +  + +G
Sbjct: 135 SNGLAWSPDGKTLYFADSPTRRIWAFDYDADGGLISNRRVFADFKDGDGEPDGMAVDAEG 194

Query: 307 EFWVAI 312
             WVA 
Sbjct: 195 NVWVAR 200

This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30), gluconolactonase and luciferin-regenerating enzyme (LRE). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 and LRE. Length = 245

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	406
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	100.0
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.94
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.92
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	99.84
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.8
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.71
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.53
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	99.52
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.43
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.39
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	99.22
PRK11028	330	6-phosphogluconolactonase; Provisional	99.21
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.13
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.11
COG3292	671	Predicted periplasmic ligand-binding sensor domain	99.08
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	99.06
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.03
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	99.01
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.95
PRK11028	330	6-phosphogluconolactonase; Provisional	98.91
COG3292	671	Predicted periplasmic ligand-binding sensor domain	98.88
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.83
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.8
COG3391	381	Uncharacterized conserved protein [Function unknow	98.74
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	98.68
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	98.65
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	98.65
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	98.63
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	98.58
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.58
KOG1214	1289	consensus Nidogen and related basement membrane pr	98.56
COG3391	381	Uncharacterized conserved protein [Function unknow	98.47
KOG0315	311	consensus G-protein beta subunit-like protein (con	98.4
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.39
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.37
KOG0318	603	consensus WD40 repeat stress protein/actin interac	98.36
PRK04922	433	tolB translocation protein TolB; Provisional	98.3
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.28
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.26
PRK04792	448	tolB translocation protein TolB; Provisional	98.25
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	98.19
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	98.17
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.13
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.13
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.12
PRK02889	427	tolB translocation protein TolB; Provisional	98.12
PRK05137	435	tolB translocation protein TolB; Provisional	98.12
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	98.11
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	98.07
KOG1214	1289	consensus Nidogen and related basement membrane pr	98.07
PRK00178	430	tolB translocation protein TolB; Provisional	98.07
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.04
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.03
KOG0279	315	consensus G protein beta subunit-like protein [Sig	98.02
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	98.02
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	98.01
PRK05137	435	tolB translocation protein TolB; Provisional	98.01
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	98.0
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.99
PRK03629	429	tolB translocation protein TolB; Provisional	97.99
PRK04043	419	tolB translocation protein TolB; Provisional	97.98
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.93
PRK01742	429	tolB translocation protein TolB; Provisional	97.85
PRK03629	429	tolB translocation protein TolB; Provisional	97.84
KOG1273	405	consensus WD40 repeat protein [General function pr	97.75
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	97.74
PRK04922	433	tolB translocation protein TolB; Provisional	97.73
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	97.73
KOG0315	311	consensus G-protein beta subunit-like protein (con	97.71
PRK02889	427	tolB translocation protein TolB; Provisional	97.7
PRK04792	448	tolB translocation protein TolB; Provisional	97.68
PTZ00421	493	coronin; Provisional	97.65
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.65
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.65
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.64
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.61
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	97.59
KOG0282	503	consensus mRNA splicing factor [Function unknown]	97.57
KOG0266	456	consensus WD40 repeat-containing protein [General	97.54
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	97.51
KOG2106	626	consensus Uncharacterized conserved protein, conta	97.49
PRK02888	635	nitrous-oxide reductase; Validated	97.49
KOG2055	514	consensus WD40 repeat protein [General function pr	97.46
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	97.45
KOG0266	456	consensus WD40 repeat-containing protein [General	97.44
COG3211	616	PhoX Predicted phosphatase [General function predi	97.38
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	97.36
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.36
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	97.36
KOG0279	315	consensus G protein beta subunit-like protein [Sig	97.35
PRK01029	428	tolB translocation protein TolB; Provisional	97.34
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	97.34
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.33
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.3
KOG0318	603	consensus WD40 repeat stress protein/actin interac	97.29
PRK00178	430	tolB translocation protein TolB; Provisional	97.28
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.27
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.26
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.26
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	97.23
COG4946	668	Uncharacterized protein related to the periplasmic	97.19
PLN00181	793	protein SPA1-RELATED; Provisional	97.18
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	97.15
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	97.1
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	97.09
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.04
PTZ00420	568	coronin; Provisional	97.0
PF13449	326	Phytase-like: Esterase-like activity of phytase	96.99
KOG0263	707	consensus Transcription initiation factor TFIID, s	96.99
KOG0263	707	consensus Transcription initiation factor TFIID, s	96.97
KOG0293	519	consensus WD40 repeat-containing protein [Function	96.94
PRK01742	429	tolB translocation protein TolB; Provisional	96.94
KOG0289	506	consensus mRNA splicing factor [General function p	96.94
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.94
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.93
KOG2106	626	consensus Uncharacterized conserved protein, conta	96.91
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.89
PRK04043	419	tolB translocation protein TolB; Provisional	96.86
KOG0772	641	consensus Uncharacterized conserved protein, conta	96.84
KOG2139	445	consensus WD40 repeat protein [General function pr	96.83
KOG0772	641	consensus Uncharacterized conserved protein, conta	96.8
KOG0316	307	consensus Conserved WD40 repeat-containing protein	96.8
PTZ00421	493	coronin; Provisional	96.79
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	96.78
KOG0294	362	consensus WD40 repeat-containing protein [Function	96.78
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.73
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.7
KOG2055	514	consensus WD40 repeat protein [General function pr	96.65
KOG2048	691	consensus WD40 repeat protein [General function pr	96.58
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	96.57
KOG1274	933	consensus WD40 repeat protein [General function pr	96.57
COG1520	370	FOG: WD40-like repeat [Function unknown]	96.47
KOG0282	503	consensus mRNA splicing factor [Function unknown]	96.47
PF13449	326	Phytase-like: Esterase-like activity of phytase	96.45
KOG1407	313	consensus WD40 repeat protein [Function unknown]	96.41
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	96.31
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	96.31
KOG0278	334	consensus Serine/threonine kinase receptor-associa	96.27
PRK01029	428	tolB translocation protein TolB; Provisional	96.25
PRK13684	334	Ycf48-like protein; Provisional	96.23
KOG0286	343	consensus G-protein beta subunit [General function	96.19
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	96.19
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	96.13
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	96.09
KOG0289	506	consensus mRNA splicing factor [General function p	96.08
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	96.03
KOG2048	691	consensus WD40 repeat protein [General function pr	96.03
KOG1539	910	consensus WD repeat protein [General function pred	95.96
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	95.91
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	95.9
KOG0973	942	consensus Histone transcription regulator HIRA, WD	95.87
KOG0278	334	consensus Serine/threonine kinase receptor-associa	95.85
COG1520	370	FOG: WD40-like repeat [Function unknown]	95.8
PRK13684	334	Ycf48-like protein; Provisional	95.69
COG4946	668	Uncharacterized protein related to the periplasmic	95.62
KOG1274	933	consensus WD40 repeat protein [General function pr	95.61
KOG0293	519	consensus WD40 repeat-containing protein [Function	95.55
KOG0275	508	consensus Conserved WD40 repeat-containing protein	95.3
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.25
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	95.23
KOG1539	910	consensus WD repeat protein [General function pred	95.11
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.1
PLN00181	793	protein SPA1-RELATED; Provisional	95.07
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	94.96
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	94.95
KOG2321	703	consensus WD40 repeat protein [General function pr	94.83
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.66
PTZ00420	568	coronin; Provisional	94.56
PF07494	24	Reg_prop: Two component regulator propeller; Inter	94.55
KOG4328	498	consensus WD40 protein [Function unknown]	94.51
KOG0283	712	consensus WD40 repeat-containing protein [Function	94.47
KOG2139	445	consensus WD40 repeat protein [General function pr	94.46
COG3211	616	PhoX Predicted phosphatase [General function predi	94.38
KOG0275	508	consensus Conserved WD40 repeat-containing protein	94.35
PF07494	24	Reg_prop: Two component regulator propeller; Inter	94.28
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	94.28
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	94.12
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	93.91
KOG0643	327	consensus Translation initiation factor 3, subunit	93.85
KOG0646	476	consensus WD40 repeat protein [General function pr	93.83
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	93.81
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	93.69
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	93.62
KOG0303	472	consensus Actin-binding protein Coronin, contains	93.6
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	93.57
KOG0771	398	consensus Prolactin regulatory element-binding pro	93.51
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	93.42
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	93.24
KOG2096	420	consensus WD40 repeat protein [General function pr	93.11
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	93.08
PLN00033	398	photosystem II stability/assembly factor; Provisio	92.95
PLN00033	398	photosystem II stability/assembly factor; Provisio	92.87
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	92.85
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	92.8
PRK13616	591	lipoprotein LpqB; Provisional	92.8
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	92.79
KOG0286	343	consensus G-protein beta subunit [General function	92.48
PRK02888	635	nitrous-oxide reductase; Validated	92.46
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	92.37
KOG0283	712	consensus WD40 repeat-containing protein [Function	92.32
KOG3881	412	consensus Uncharacterized conserved protein [Funct	92.31
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	92.28
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	92.25
KOG0640	430	consensus mRNA cleavage stimulating factor complex	92.24
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	91.99
KOG0310	487	consensus Conserved WD40 repeat-containing protein	91.93
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	91.93
KOG0310	487	consensus Conserved WD40 repeat-containing protein	91.69
KOG0288	459	consensus WD40 repeat protein TipD [General functi	91.38
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	91.33
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	91.14
KOG0973	942	consensus Histone transcription regulator HIRA, WD	91.1
KOG0308	735	consensus Conserved WD40 repeat-containing protein	90.76
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	90.69
PHA02713	557	hypothetical protein; Provisional	90.67
KOG2321	703	consensus WD40 repeat protein [General function pr	90.59
KOG0646	476	consensus WD40 repeat protein [General function pr	90.14
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	89.92
PF14339	236	DUF4394: Domain of unknown function (DUF4394)	89.4
KOG2315	566	consensus Predicted translation initiation factor	89.38
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	89.18
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	89.08
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	89.03
KOG0645	312	consensus WD40 repeat protein [General function pr	89.0
KOG0296	399	consensus Angio-associated migratory cell protein	88.64
KOG0643	327	consensus Translation initiation factor 3, subunit	88.55
PRK13616	591	lipoprotein LpqB; Provisional	88.0
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	87.89
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	87.84
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	87.71
KOG1407	313	consensus WD40 repeat protein [Function unknown]	87.49
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	87.32
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	87.23
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	87.17
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	87.02
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	86.98
KOG0639	705	consensus Transducin-like enhancer of split protei	86.16
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	85.89
KOG0284	464	consensus Polyadenylation factor I complex, subuni	85.52
KOG0771	398	consensus Prolactin regulatory element-binding pro	85.51
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	85.16
KOG2110	391	consensus Uncharacterized conserved protein, conta	85.14
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	85.06
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	85.03
COG4247	364	Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph	85.03
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	84.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	84.93
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	84.92
KOG0639	705	consensus Transducin-like enhancer of split protei	84.86
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	84.75
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	84.71
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	84.09
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	83.93
PHA03098	534	kelch-like protein; Provisional	83.82
KOG2110	391	consensus Uncharacterized conserved protein, conta	83.61
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	83.47
COG5276	370	Uncharacterized conserved protein [Function unknow	83.37
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	83.28
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	82.91
KOG0288	459	consensus WD40 repeat protein TipD [General functi	82.9
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	82.4
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	82.27
KOG0641	350	consensus WD40 repeat protein [General function pr	82.15
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	82.08
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	82.02
KOG0649	325	consensus WD40 repeat protein [General function pr	81.9
KOG0316	307	consensus Conserved WD40 repeat-containing protein	81.37
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	81.35
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	81.3
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	80.93
KOG0296	399	consensus Angio-associated migratory cell protein	80.89
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	80.75
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	80.3
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	80.18

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=100.00  E-value=3.4e-57  Score=419.63  Aligned_cols=325  Identities=53%  Similarity=0.942  Sum_probs=287.5

Q ss_pred             eeccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEee--cCCCccccCCCCCcccccccCCcCCcceEEE
Q 015463           62 IKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFT--SNNRSELCNPKPIATSYLKNEHICGRPLGLR  137 (406)
Q Consensus        62 ~~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~  137 (406)
                      .+......|||++.+|+.|.--|++..+|+|.+|...  +|..++..  +......|++     .....++.||||+||+
T Consensus        47 l~~~~~~~g~E~~~fd~~~~gp~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~-----~~~~~e~~CGRPLGl~  121 (376)
T KOG1520|consen   47 LIPNNHLTGPESLLFDPQGGGPYTGVVDGRILKYTGNDDGWVKFADTKDSTNRSQCCDP-----GSFETEPLCGRPLGIR  121 (376)
T ss_pred             cccccccCChhhheecccCCCceEEEECCceEEEeccCceEEEEEeccccccccccCCC-----cceecccccCCcceEE
Confidence            3444456788888888877667888888888888765  77777765  3333343432     1346788899999999


Q ss_pred             EeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccC
Q 015463          138 FDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSL  217 (406)
Q Consensus       138 ~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~  217 (406)
                      |+...|+|||||++.||+.+++++++.+.+.+..+|.++.+.|+++++++|.+||||+|++|.++++      +.+++| 
T Consensus       122 f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~------~~a~l~-  194 (376)
T KOG1520|consen  122 FDKKGGDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDF------VFAALE-  194 (376)
T ss_pred             eccCCCeEEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhhe------EEeeec-
Confidence            9996669999999999999999999988888889999999999999999999999999999999999      999999 


Q ss_pred             CCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeec-CCCC
Q 015463          218 NDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI-LPGY  296 (406)
Q Consensus       218 ~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~-l~g~  296 (406)
                              +.++||+++||+.|+.++++++++.+|||+++|+|+++++++|+...||.+||++|+++|+.|+|++ +||+
T Consensus       195 --------g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~  266 (376)
T KOG1520|consen  195 --------GDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGY  266 (376)
T ss_pred             --------CCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCC
Confidence                    9999999999999999999999999999999999999999999999999999999999999999997 9999


Q ss_pred             CCceEECCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCCEEEEEECCCCCe
Q 015463          297 PDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKV  376 (406)
Q Consensus       297 pd~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~  376 (406)
                      ||||+.+++|++||+++..++.+..++..+|+.|+++.+++........+.-++.+|.+|.+.|.+|+++++++|.+|+.
T Consensus       267 PDNIR~~~~G~fWVal~~~~~~~~~~~~~~p~vr~~~~~~~~~~~~~~~~~~~~~p~~~V~~~d~~G~il~~lhD~~g~~  346 (376)
T KOG1520|consen  267 PDNIRRDSTGHFWVALHSKRSTLWRLLMKYPWVRKFIAKLPKYMELLYFLNNGGKPHSAVKLSDETGKILESLHDKEGKV  346 (376)
T ss_pred             CcceeECCCCCEEEEEecccchHHHhhhcChHHHHHHHhhccchhhhhhhhccCCCceEEEEecCCCcEEEEEecCCCCc
Confidence            99999999999999999999999999999999999999997766554444444456677888889999999999999999


Q ss_pred             eeceeEEEEeCCEEEEecCCCCeEEEEeCC
Q 015463          377 VKAISEVEEKDGKLWMGSVLMPFVAVYDLS  406 (406)
Q Consensus       377 ~~~~s~~~~~~g~Ly~Gs~~~~~i~~~~~~  406 (406)
                      +..++.+.|++|+||+||+.++++++++|.
T Consensus       347 ~~~~sev~E~dg~LyiGS~~~p~i~~lkl~  376 (376)
T KOG1520|consen  347 ITLVSEVGEHDGHLYIGSLFNPYIARLKLP  376 (376)
T ss_pred             eEEEEEEeecCCeEEEcccCcceeEEEecC
Confidence            999999999999999999999999999984

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.94  E-value=3.9e-25  Score=204.21  Aligned_cols=232  Identities=31%  Similarity=0.502  Sum_probs=176.4

Q ss_pred             cceEEEcC-CCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463           71 PESMAFDP-LGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (406)
Q Consensus        71 pe~i~~d~-~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va  148 (406)
                      ||++++++ +|.++|++..+++|++++.+ ....+..                        ...|.|++++..+|.|||+
T Consensus         2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~------------------------~~~~~G~~~~~~~g~l~v~   57 (246)
T PF08450_consen    2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID------------------------LPGPNGMAFDRPDGRLYVA   57 (246)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE------------------------SSSEEEEEEECTTSEEEEE
T ss_pred             CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe------------------------cCCCceEEEEccCCEEEEE
Confidence            79999997 78888888999999999987 3322211                        1228999999337999999


Q ss_pred             eCCCcEEEEeCCCCeEEEcccccCCc-ccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463          149 DAYFGLMKVGPEGGLATSLATEAEGV-PLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK  227 (406)
Q Consensus       149 d~~~gl~~~d~~~~~~~~l~~~~~~~-~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  227 (406)
                      +. .++..+|+++++++.+.....+. ++..+|++++|++|++|+|++......                        ..
T Consensus        58 ~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~------------------------~~  112 (246)
T PF08450_consen   58 DS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGAS------------------------GI  112 (246)
T ss_dssp             ET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTT------------------------CG
T ss_pred             Ec-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccc------------------------cc
Confidence            86 57788899999988877664343 788999999999999999986421100                        01


Q ss_pred             CCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCC--CcceeeeecC---CCCCCceEE
Q 015463          228 DTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEK--AGNLEAFAIL---PGYPDNVRT  302 (406)
Q Consensus       228 ~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~--~~~~~~~~~l---~g~pd~i~~  302 (406)
                      ..|+|++++++ ++.+.+..++..||||++++|++.||++++..++|++|+++.+.  ....+++.+.   .|.|||+++
T Consensus       113 ~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~v  191 (246)
T PF08450_consen  113 DPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAV  191 (246)
T ss_dssp             GSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEE
T ss_pred             cccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceE
Confidence            11789999999 88888888999999999999999999999999999999997432  3445666543   346999999


Q ss_pred             CCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCCEEEEEECCCCCeeeceeE
Q 015463          303 NEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISE  382 (406)
Q Consensus       303 d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~~~s~  382 (406)
                      |++|+|||+....                                      +.|.++|++|+.+..+.-+..    .++.
T Consensus       192 D~~G~l~va~~~~--------------------------------------~~I~~~~p~G~~~~~i~~p~~----~~t~  229 (246)
T PF08450_consen  192 DSDGNLWVADWGG--------------------------------------GRIVVFDPDGKLLREIELPVP----RPTN  229 (246)
T ss_dssp             BTTS-EEEEEETT--------------------------------------TEEEEEETTSCEEEEEE-SSS----SEEE
T ss_pred             cCCCCEEEEEcCC--------------------------------------CEEEEECCCccEEEEEcCCCC----CEEE
Confidence            9999999998644                                      138889999999998876622    3444


Q ss_pred             EEE---eCCEEEEec
Q 015463          383 VEE---KDGKLWMGS  394 (406)
Q Consensus       383 ~~~---~~g~Ly~Gs  394 (406)
                      +..   ..++||+.+
T Consensus       230 ~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  230 CAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEEESTTSSEEEEEE
T ss_pred             EEEECCCCCEEEEEe
Confidence            443   347899976

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.92  E-value=5.8e-23  Score=192.92  Aligned_cols=200  Identities=29%  Similarity=0.413  Sum_probs=146.9

Q ss_pred             CcccCcceEEEcCCCC-eeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCC
Q 015463           66 NQIQGPESMAFDPLGR-GPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT  142 (406)
Q Consensus        66 ~~~~gpe~i~~d~~g~-~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~  142 (406)
                      ....-.|+..++++.+ ++|++..+++|+++++.  ..+.+...                       ...+.++.++. +
T Consensus        22 ~~~~~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p-----------------------~~~~~~~~~d~-~   77 (307)
T COG3386          22 KGATLGEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSP-----------------------GGFSSGALIDA-G   77 (307)
T ss_pred             cccccccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECC-----------------------CCcccceeecC-C
Confidence            3445667777776655 78999999999999986  33333221                       23356777887 7


Q ss_pred             CcEEEEeCCCcEEEEeCCCCeE-EEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCC
Q 015463          143 GDLYIADAYFGLMKVGPEGGLA-TSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPS  221 (406)
Q Consensus       143 g~L~Vad~~~gl~~~d~~~~~~-~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~  221 (406)
                      +.|+++..  |+++++++.+.. +.+.....+.+.+.+|++.++++|.+||++.+. +.           ...-+     
T Consensus        78 g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~-~~-----------~~~~~-----  138 (307)
T COG3386          78 GRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGY-FD-----------LGKSE-----  138 (307)
T ss_pred             CeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCc-cc-----------cCccc-----
Confidence            88888764  677777665655 666666778888999999999999999999762 10           00011     


Q ss_pred             CCcccCCCCeEEEEeCCCCeEEEec-ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee---CCCCcce-eeeec-CCC
Q 015463          222 PIKITKDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI---GEKAGNL-EAFAI-LPG  295 (406)
Q Consensus       222 ~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~---g~~~~~~-~~~~~-l~g  295 (406)
                          .+..|.||++||. ++++.+. ..+..+||||+|||++.+|+++|..++|++|+.+   +...+.. .++.+ .+|
T Consensus       139 ----~~~~G~lyr~~p~-g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G  213 (307)
T COG3386         139 ----ERPTGSLYRVDPD-GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPG  213 (307)
T ss_pred             ----cCCcceEEEEcCC-CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCC
Confidence                4556889999996 4555554 4499999999999999999999999999999987   3333331 22333 579


Q ss_pred             CCCceEECCCCCEEEEEc
Q 015463          296 YPDNVRTNEKGEFWVAIH  313 (406)
Q Consensus       296 ~pd~i~~d~~G~lwv~~~  313 (406)
                      .|||+++|.+|++|++..
T Consensus       214 ~PDG~~vDadG~lw~~a~  231 (307)
T COG3386         214 LPDGMAVDADGNLWVAAV  231 (307)
T ss_pred             CCCceEEeCCCCEEEecc
Confidence            999999999999997543

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=99.84  E-value=6.3e-21  Score=144.34  Aligned_cols=88  Identities=52%  Similarity=0.891  Sum_probs=74.4

Q ss_pred             cceEEcCC-CCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEe
Q 015463          180 NDLDIDDE-GNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLS  258 (406)
Q Consensus       180 ~~l~~d~d-G~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~  258 (406)
                      |+++++++ |.||||++|++|.+++|      +.+++|         +.++|+|++|||.|++++++++++.+||||+++
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~~~------~~~~le---------~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals   65 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRRDW------VYDLLE---------GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALS   65 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TTGH------HHHHHH---------T---EEEEEEETTTTEEEEEEEEESSEEEEEE-
T ss_pred             CceeEecCCCEEEEEeCccccCccce------eeeeec---------CCCCcCEEEEECCCCeEEEehhCCCccCeEEEc
Confidence            68999998 99999999999999999      999999         999999999999999999999999999999999


Q ss_pred             cCCCEEEEEeCCCCeEEEEEeeCC
Q 015463          259 KDKSFFVFCEGSVGRLHKYWLIGE  282 (406)
Q Consensus       259 ~d~~~l~v~~t~~~~i~~~~~~g~  282 (406)
                      +|+++++|+|+...||+|||++|+
T Consensus        66 ~d~~~vlv~Et~~~Ri~rywl~Gp   89 (89)
T PF03088_consen   66 PDESFVLVAETGRYRILRYWLKGP   89 (89)
T ss_dssp             TTSSEEEEEEGGGTEEEEEESSST
T ss_pred             CCCCEEEEEeccCceEEEEEEeCC
Confidence            999999999999999999999875

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.80  E-value=1.9e-17  Score=147.02  Aligned_cols=240  Identities=16%  Similarity=0.218  Sum_probs=174.0

Q ss_pred             cCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCC
Q 015463           65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT  142 (406)
Q Consensus        65 ~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~  142 (406)
                      ...-.+|..++.++||..+|++...|-|-++|+.  +++.+...                      .+.+|++|.+++ +
T Consensus        58 vp~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg----------------------~Ga~Phgiv~gp-d  114 (353)
T COG4257          58 VPNGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLG----------------------SGASPHGIVVGP-D  114 (353)
T ss_pred             cCCCCCccccccCCCCceEEecCccccceecCCCCCceEEEecC----------------------CCCCCceEEECC-C
Confidence            4455689999999999988899999999999987  55555322                      246799999999 8


Q ss_pred             CcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCC
Q 015463          143 GDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSP  222 (406)
Q Consensus       143 g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  222 (406)
                      |..||+|...+|.|+|+++.+++.+.-.. .......+...+|++|++||+...                          
T Consensus       115 g~~Witd~~~aI~R~dpkt~evt~f~lp~-~~a~~nlet~vfD~~G~lWFt~q~--------------------------  167 (353)
T COG4257         115 GSAWITDTGLAIGRLDPKTLEVTRFPLPL-EHADANLETAVFDPWGNLWFTGQI--------------------------  167 (353)
T ss_pred             CCeeEecCcceeEEecCcccceEEeeccc-ccCCCcccceeeCCCccEEEeecc--------------------------
Confidence            99999999889999999999888765332 122335778899999999999864                          


Q ss_pred             CcccCCCCeEEEEeCCCCeEEEec-ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeec---CCCCCC
Q 015463          223 IKITKDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI---LPGYPD  298 (406)
Q Consensus       223 ~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~---l~g~pd  298 (406)
                             |---++||.++.++++- ..-..|+||+..+||+ +|+++-..+-|-+++..   .+..+++..   +..-..
T Consensus       168 -------G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGs-vwyaslagnaiaridp~---~~~aev~p~P~~~~~gsR  236 (353)
T COG4257         168 -------GAYGRLDPARNVISVFPAPQGGGPYGICATPDGS-VWYASLAGNAIARIDPF---AGHAEVVPQPNALKAGSR  236 (353)
T ss_pred             -------ccceecCcccCceeeeccCCCCCCcceEECCCCc-EEEEeccccceEEcccc---cCCcceecCCCccccccc
Confidence                   22337899888887774 3445789999999997 78887777888888854   444455532   111133


Q ss_pred             ceEECCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCCEEEEEECCCCCeee
Q 015463          299 NVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVK  378 (406)
Q Consensus       299 ~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~  378 (406)
                      .|-.|+.|++|+++...                                      +.+.+|||.-+.-..|.-+.-+.  
T Consensus       237 riwsdpig~~wittwg~--------------------------------------g~l~rfdPs~~sW~eypLPgs~a--  276 (353)
T COG4257         237 RIWSDPIGRAWITTWGT--------------------------------------GSLHRFDPSVTSWIEYPLPGSKA--  276 (353)
T ss_pred             ccccCccCcEEEeccCC--------------------------------------ceeeEeCcccccceeeeCCCCCC--
Confidence            46679999999998654                                      23677888766655554443321  


Q ss_pred             ceeEEE-EeCCEEEEecCCCCeEEEEeC
Q 015463          379 AISEVE-EKDGKLWMGSVLMPFVAVYDL  405 (406)
Q Consensus       379 ~~s~~~-~~~g~Ly~Gs~~~~~i~~~~~  405 (406)
                      ...++. +..|.+|+.....+.|.|+|-
T Consensus       277 rpys~rVD~~grVW~sea~agai~rfdp  304 (353)
T COG4257         277 RPYSMRVDRHGRVWLSEADAGAIGRFDP  304 (353)
T ss_pred             CcceeeeccCCcEEeeccccCceeecCc
Confidence            223333 445788888888888888773

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.71  E-value=1.7e-14  Score=156.91  Aligned_cols=265  Identities=20%  Similarity=0.240  Sum_probs=171.0

Q ss_pred             eccCcccCcceEEEcCC-CCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeC
Q 015463           63 KFLNQIQGPESMAFDPL-GRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK  140 (406)
Q Consensus        63 ~~~~~~~gpe~i~~d~~-g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~  140 (406)
                      +...++..|..+++|+. |+++++.+.+++|.+++.+ .+....... +  ..+...+.     ......++|.||++++
T Consensus       562 ~~~s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~-g--~~G~~dG~-----~~~a~f~~P~GIavd~  633 (1057)
T PLN02919        562 LLTSPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGST-G--EEGLRDGS-----FEDATFNRPQGLAYNA  633 (1057)
T ss_pred             cccccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccC-C--CcCCCCCc-----hhccccCCCcEEEEeC
Confidence            33457789999999975 6644556788999999987 333222110 0  00000000     1122367899999998


Q ss_pred             CCCcEEEEeCC-CcEEEEeCCCCeEEEcccc------cC-C-----cccccccceEEcC-CCCEEEEeCCCchhhhcccc
Q 015463          141 KTGDLYIADAY-FGLMKVGPEGGLATSLATE------AE-G-----VPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQK  206 (406)
Q Consensus       141 ~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~------~~-~-----~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~  206 (406)
                      +++.|||+|.. +.|.++|..++.++.+...      .. +     ..++.|.++++++ +|.+|++++.          
T Consensus       634 ~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~----------  703 (1057)
T PLN02919        634 KKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG----------  703 (1057)
T ss_pred             CCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC----------
Confidence            44569999987 4688899988887776431      01 1     1366889999998 7899999864          


Q ss_pred             ccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec---------------ccCCCcceEEEecCCCEEEEEeCCC
Q 015463          207 ENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL---------------RNLQFPNGLSLSKDKSFFVFCEGSV  271 (406)
Q Consensus       207 ~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~---------------~~~~~~ngi~l~~d~~~l~v~~t~~  271 (406)
                                            .++|+++|+.++.+..+.               ..+..|+||++++|++.+|++++.+
T Consensus       704 ----------------------~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n  761 (1057)
T PLN02919        704 ----------------------QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES  761 (1057)
T ss_pred             ----------------------CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC
Confidence                                  256777777766554432               1245789999999999999999999


Q ss_pred             CeEEEEEeeCCCCc----ce-------eeeec--------CCCCCCceEECCCCCEEEEEccCCcchhhhhhcChhhhhh
Q 015463          272 GRLHKYWLIGEKAG----NL-------EAFAI--------LPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHF  332 (406)
Q Consensus       272 ~~i~~~~~~g~~~~----~~-------~~~~~--------l~g~pd~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~  332 (406)
                      ++|.++++++....    ..       ..|.+        .-..|.++++|++|++||+....+                
T Consensus       762 ~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~----------------  825 (1057)
T PLN02919        762 SSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNH----------------  825 (1057)
T ss_pred             CeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCC----------------
Confidence            99999997642110    00       00100        112588999999999999986542                


Q ss_pred             hhccCccceeeeeEeecCcceEEEEEECCCCCEEEEEEC------CCCC----eeeceeEEE-EeCCEEEEecCCCCeEE
Q 015463          333 LLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLED------SKGK----VVKAISEVE-EKDGKLWMGSVLMPFVA  401 (406)
Q Consensus       333 ~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~------~~g~----~~~~~s~~~-~~~g~Ly~Gs~~~~~i~  401 (406)
                                            .|..+|+++..+..+..      .+|.    .+...+.+. ..+|+||+....++.|.
T Consensus       826 ----------------------rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Ir  883 (1057)
T PLN02919        826 ----------------------KIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIR  883 (1057)
T ss_pred             ----------------------EEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEE
Confidence                                  24455655444433221      0110    112334443 45788999988889888


Q ss_pred             EEeC
Q 015463          402 VYDL  405 (406)
Q Consensus       402 ~~~~  405 (406)
                      ++|+
T Consensus       884 vid~  887 (1057)
T PLN02919        884 YLDL  887 (1057)
T ss_pred             EEEC
Confidence            8876

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.53  E-value=3.6e-12  Score=113.68  Aligned_cols=244  Identities=16%  Similarity=0.219  Sum_probs=167.9

Q ss_pred             cccceeccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceE
Q 015463           58 QNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLG  135 (406)
Q Consensus        58 ~~~~~~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g  135 (406)
                      -++++...+.-..|..|.+++||..+++.+.. .|.|++++  ++++|....+                   +....-..
T Consensus        93 Gev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~-------------------~a~~nlet  152 (353)
T COG4257          93 GEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLE-------------------HADANLET  152 (353)
T ss_pred             CceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecccc-------------------cCCCcccc
Confidence            34556666777889999999999955555555 79999997  7777754321                   11222345


Q ss_pred             EEEeCCCCcEEEEeCCCcEE-EEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccccccccc
Q 015463          136 LRFDKKTGDLYIADAYFGLM-KVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLC  214 (406)
Q Consensus       136 i~~d~~~g~L~Vad~~~gl~-~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~  214 (406)
                      ..||+ .|+||.... .|.+ ++||.++.++++...    +...+++|++.+||.+|++...                  
T Consensus       153 ~vfD~-~G~lWFt~q-~G~yGrLdPa~~~i~vfpaP----qG~gpyGi~atpdGsvwyasla------------------  208 (353)
T COG4257         153 AVFDP-WGNLWFTGQ-IGAYGRLDPARNVISVFPAP----QGGGPYGICATPDGSVWYASLA------------------  208 (353)
T ss_pred             eeeCC-CccEEEeec-cccceecCcccCceeeeccC----CCCCCcceEECCCCcEEEEecc------------------
Confidence            67998 899999865 4444 899998888776544    2346899999999999999742                  


Q ss_pred             ccCCCCCCCcccCCCCeEEEEeCCCCeEEEeccc---CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee
Q 015463          215 SSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRN---LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA  291 (406)
Q Consensus       215 ~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~---~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~  291 (406)
                                    ...|.++||.++..+++...   ......+-.++.+ .+|+++....++++|+...   .....+ 
T Consensus       209 --------------gnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig-~~wittwg~g~l~rfdPs~---~sW~ey-  269 (353)
T COG4257         209 --------------GNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIG-RAWITTWGTGSLHRFDPSV---TSWIEY-  269 (353)
T ss_pred             --------------ccceEEcccccCCcceecCCCcccccccccccCccC-cEEEeccCCceeeEeCccc---ccceee-
Confidence                          24589999999876665321   1222345555555 5888888889999998652   111112 


Q ss_pred             cCCC---CCCceEECCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCCEEEE
Q 015463          292 ILPG---YPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQV  368 (406)
Q Consensus       292 ~l~g---~pd~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~  368 (406)
                      .+||   .|+.+++|..|++|......                                      +.+.+||++...+.+
T Consensus       270 pLPgs~arpys~rVD~~grVW~sea~a--------------------------------------gai~rfdpeta~ftv  311 (353)
T COG4257         270 PLPGSKARPYSMRVDRHGRVWLSEADA--------------------------------------GAIGRFDPETARFTV  311 (353)
T ss_pred             eCCCCCCCcceeeeccCCcEEeecccc--------------------------------------CceeecCcccceEEE
Confidence            2443   47889999999999987543                                      238899999998988


Q ss_pred             EECCCCCeeeceeEEEEeCCEEEEecCCCCeEEEEe
Q 015463          369 LEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYD  404 (406)
Q Consensus       369 ~~~~~g~~~~~~s~~~~~~g~Ly~Gs~~~~~i~~~~  404 (406)
                      |..+.-.  ...-.+-...|++|++.-.-+.+.++.
T Consensus       312 ~p~pr~n--~gn~ql~gr~ge~W~~e~gvd~lv~~r  345 (353)
T COG4257         312 LPIPRPN--SGNIQLDGRPGELWFTEAGVDALVTTR  345 (353)
T ss_pred             ecCCCCC--CCceeccCCCCceeecccCcceeEEEE
Confidence            8654321  122333345789999987767666543

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.52  E-value=8.9e-13  Score=114.93  Aligned_cols=233  Identities=15%  Similarity=0.122  Sum_probs=146.6

Q ss_pred             ceEEEcC-CCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463           72 ESMAFDP-LGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (406)
Q Consensus        72 e~i~~d~-~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va  148 (406)
                      |++.++. .+.++|+....|.|.|+|-.  ++.......+. ..-           ...+..++|.          .+++
T Consensus        18 Egp~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~-~ag-----------~ilpv~~~~q----------~~~v   75 (310)
T KOG4499|consen   18 EGPHWDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPP-SAG-----------FILPVEGGPQ----------EFAV   75 (310)
T ss_pred             CCCceEEecceEEEEEeccCceehhhhhhhheEEEEEecCc-cee-----------EEEEecCCCc----------eEEE
Confidence            5666663 46689999999999999865  22211111000 000           0011122232          3333


Q ss_pred             eCCC--cEEEEeCCCCeEEEccc---ccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCC
Q 015463          149 DAYF--GLMKVGPEGGLATSLAT---EAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPI  223 (406)
Q Consensus       149 d~~~--gl~~~d~~~~~~~~l~~---~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  223 (406)
                      ..+.  +|..+|-.......+.+   ..+....+..|+--+|++|+.|.++.+.             .-+.+|       
T Consensus        76 ~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad-------------~~~~le-------  135 (310)
T KOG4499|consen   76 GCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMAD-------------FGDDLE-------  135 (310)
T ss_pred             eecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCCCCceeeeeecc-------------cccccc-------
Confidence            3332  34444422222222222   2233345678899999999999988541             112222       


Q ss_pred             cccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeE--EEEEeeCCCCcceeeeecC-------C
Q 015463          224 KITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRL--HKYWLIGEKAGNLEAFAIL-------P  294 (406)
Q Consensus       224 ~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i--~~~~~~g~~~~~~~~~~~l-------~  294 (406)
                         .-.|.|+++- ..++++.+...+..+||++++.|.+..|+.++.+..|  |.|+..+....+.+++.++       +
T Consensus       136 ---~~~g~Ly~~~-~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~  211 (310)
T KOG4499|consen  136 ---PIGGELYSWL-AGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFES  211 (310)
T ss_pred             ---ccccEEEEec-cCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCC
Confidence               1134455554 4588998888899999999999999999999999999  5555665544444443332       3


Q ss_pred             CCCCceEECCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceE
Q 015463          295 GYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHA  354 (406)
Q Consensus       295 g~pd~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  354 (406)
                      -.|||+++|.+|+|||++.++..++.    -+|..++++..+..|......+.++|+...
T Consensus       212 ~~PDGm~ID~eG~L~Va~~ng~~V~~----~dp~tGK~L~eiklPt~qitsccFgGkn~d  267 (310)
T KOG4499|consen  212 LEPDGMTIDTEGNLYVATFNGGTVQK----VDPTTGKILLEIKLPTPQITSCCFGGKNLD  267 (310)
T ss_pred             CCCCcceEccCCcEEEEEecCcEEEE----ECCCCCcEEEEEEcCCCceEEEEecCCCcc
Confidence            46999999999999999988765532    378889988888777777788888877544

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.43  E-value=3.9e-11  Score=130.92  Aligned_cols=209  Identities=15%  Similarity=0.203  Sum_probs=139.8

Q ss_pred             cccCcceEEEcCCCCeeEE-EecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC
Q 015463           67 QIQGPESMAFDPLGRGPYT-GVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (406)
Q Consensus        67 ~~~gpe~i~~d~~g~~ly~-g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g  143 (406)
                      .+..|.+|+++++|+.+|+ .+.+++|.+++..  .++.++..+........+      ........+.|.+++++++++
T Consensus       622 ~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg------~~~~~~~ln~P~gVa~dp~~g  695 (1057)
T PLN02919        622 TFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGG------KKGTSQVLNSPWDVCFEPVNE  695 (1057)
T ss_pred             ccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCC------hhhhHhhcCCCeEEEEecCCC
Confidence            3567999999998876666 5667889999875  444454321100000000      000111246799999998678


Q ss_pred             cEEEEeCC-CcEEEEeCCCCeEEEcccc-----cC-----CcccccccceEEcCCCC-EEEEeCCCchhhhccccccccc
Q 015463          144 DLYIADAY-FGLMKVGPEGGLATSLATE-----AE-----GVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPL  211 (406)
Q Consensus       144 ~L~Vad~~-~gl~~~d~~~~~~~~l~~~-----~~-----~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~  211 (406)
                      .|||++.. +.|+++|+.++.+..+...     ..     ...+..|++|+++++|. ||++++.               
T Consensus       696 ~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~---------------  760 (1057)
T PLN02919        696 KVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE---------------  760 (1057)
T ss_pred             eEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC---------------
Confidence            99999986 5799999988876554321     01     12356799999999986 9999864               


Q ss_pred             cccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecc----------------------cCCCcceEEEecCCCEEEEEeC
Q 015463          212 QLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLR----------------------NLQFPNGLSLSKDKSFFVFCEG  269 (406)
Q Consensus       212 ~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~----------------------~~~~~ngi~l~~d~~~l~v~~t  269 (406)
                                       +++|.+||++++....+..                      .+..|.|+++++|++ +||+++
T Consensus       761 -----------------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs  822 (1057)
T PLN02919        761 -----------------SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADS  822 (1057)
T ss_pred             -----------------CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEEC
Confidence                             3678888887665433210                      134688999999986 899999


Q ss_pred             CCCeEEEEEeeCCCCcceeeeec--------------CCCCCCceEECCCCCEEEEEccCCc
Q 015463          270 SVGRLHKYWLIGEKAGNLEAFAI--------------LPGYPDNVRTNEKGEFWVAIHCRRS  317 (406)
Q Consensus       270 ~~~~i~~~~~~g~~~~~~~~~~~--------------l~g~pd~i~~d~~G~lwv~~~~~~~  317 (406)
                      .+++|.+++.++...   ..+..              .-..|.++++|++|++||+....+.
T Consensus       823 ~N~rIrviD~~tg~v---~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~  881 (1057)
T PLN02919        823 YNHKIKKLDPATKRV---TTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSL  881 (1057)
T ss_pred             CCCEEEEEECCCCeE---EEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCE
Confidence            999999999764311   11110              0125889999999999999755443

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.39  E-value=8.6e-11  Score=108.41  Aligned_cols=137  Identities=24%  Similarity=0.385  Sum_probs=101.1

Q ss_pred             ceEEEEeCCCCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEc-CCCCEEEEeCCCchhhhcccccccc
Q 015463          133 PLGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDID-DEGNVYFTDSSTNYQRRQMQKENIP  210 (406)
Q Consensus       133 p~gi~~d~~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d-~dG~ly~t~~~~~~~~~~~~~~~~~  210 (406)
                      |-|.++++.+|+||+.|.. +.|+++++++++.+.+..       ..+++++++ ++|.+|+++.               
T Consensus         2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~-------~~~~G~~~~~~~g~l~v~~~---------------   59 (246)
T PF08450_consen    2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL-------PGPNGMAFDRPDGRLYVADS---------------   59 (246)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES-------SSEEEEEEECTTSEEEEEET---------------
T ss_pred             CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec-------CCCceEEEEccCCEEEEEEc---------------
Confidence            3477888768999999976 569999999987665322       127889998 7899999985               


Q ss_pred             ccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecc------cCCCcceEEEecCCCEEEEEeCCC--------CeEEE
Q 015463          211 LQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLR------NLQFPNGLSLSKDKSFFVFCEGSV--------GRLHK  276 (406)
Q Consensus       211 ~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~------~~~~~ngi~l~~d~~~l~v~~t~~--------~~i~~  276 (406)
                                         +++..+|+++++++.+..      ....+|.+++++||+ +|+++...        ++|++
T Consensus        60 -------------------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~  119 (246)
T PF08450_consen   60 -------------------GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYR  119 (246)
T ss_dssp             -------------------TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEE
T ss_pred             -------------------CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEE
Confidence                               346677999998877653      356789999999997 88987654        56888


Q ss_pred             EEeeCCCCcceeeeecCCCCCCceEECCCCC-EEEEEccC
Q 015463          277 YWLIGEKAGNLEAFAILPGYPDNVRTNEKGE-FWVAIHCR  315 (406)
Q Consensus       277 ~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~-lwv~~~~~  315 (406)
                      ++.+    ++.+...+.-..|++|+++++|+ ||++....
T Consensus       120 ~~~~----~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~  155 (246)
T PF08450_consen  120 IDPD----GKVTVVADGLGFPNGIAFSPDGKTLYVADSFN  155 (246)
T ss_dssp             EETT----SEEEEEEEEESSEEEEEEETTSSEEEEEETTT
T ss_pred             ECCC----CeEEEEecCcccccceEECCcchheeeccccc
Confidence            8854    23334443335699999999997 78876544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=99.22  E-value=1e-09  Score=107.18  Aligned_cols=171  Identities=22%  Similarity=0.326  Sum_probs=112.7

Q ss_pred             cccCcceEEEcCCCCeeEEEec------------CC-EEEEEeCC-------ceeEEEeecCCCccccCCCCCccccccc
Q 015463           67 QIQGPESMAFDPLGRGPYTGVA------------DG-RILFWDGL-------KWTDFAFTSNNRSELCNPKPIATSYLKN  126 (406)
Q Consensus        67 ~~~gpe~i~~d~~g~~ly~g~~------------~g-~I~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (406)
                      .+..|..|++|++|+ +|++..            .+ +|++++..       +++.|+.                     
T Consensus        12 ~~~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~---------------------   69 (367)
T TIGR02604        12 LLRNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE---------------------   69 (367)
T ss_pred             ccCCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec---------------------
Confidence            578999999999999 787742            23 88888642       1222221                     


Q ss_pred             CCcCCcceEEEEeCCCCcEEEEeCCCcEEEE-eCCC-----CeEEEcccccCCc---ccccccceEEcCCCCEEEEeCCC
Q 015463          127 EHICGRPLGLRFDKKTGDLYIADAYFGLMKV-GPEG-----GLATSLATEAEGV---PLRFTNDLDIDDEGNVYFTDSST  197 (406)
Q Consensus       127 ~~~~~~p~gi~~d~~~g~L~Vad~~~gl~~~-d~~~-----~~~~~l~~~~~~~---~~~~~~~l~~d~dG~ly~t~~~~  197 (406)
                        ....|.||++.+ +| |||++. ..|+++ +.++     ++.+.+.+.....   ....++++++++||+||++..+.
T Consensus        70 --~l~~p~Gi~~~~-~G-lyV~~~-~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~  144 (367)
T TIGR02604        70 --ELSMVTGLAVAV-GG-VYVATP-PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNT  144 (367)
T ss_pred             --CCCCccceeEec-CC-EEEeCC-CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccC
Confidence              135689999987 67 999875 468888 4432     1344444433322   34568999999999999988642


Q ss_pred             chhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEE
Q 015463          198 NYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKY  277 (406)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~  277 (406)
                      ....  ....+  ..         ........|++++++|++++++.+..++.+++|++++++++ +|+++.......++
T Consensus       145 ~~~~--~~~~~--~~---------~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~-l~~tdn~~~~~~~i  210 (367)
T TIGR02604       145 LASK--VTRPG--TS---------DESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGD-VFFCDNDDPPLCRV  210 (367)
T ss_pred             CCce--eccCC--Cc---------cCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCC-EEEEccCCCceeEE
Confidence            1100  00000  00         00002234789999999999999999999999999999886 57877655444444


Q ss_pred             E
Q 015463          278 W  278 (406)
Q Consensus       278 ~  278 (406)
                      +
T Consensus       211 ~  211 (367)
T TIGR02604       211 T  211 (367)
T ss_pred             c
Confidence            3

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.21  E-value=3.6e-08  Score=94.94  Aligned_cols=191  Identities=15%  Similarity=0.173  Sum_probs=115.6

Q ss_pred             cCcceEEEcCCCCeeEEEec-CCEEEEEeC--C-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc
Q 015463           69 QGPESMAFDPLGRGPYTGVA-DGRILFWDG--L-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~-~g~I~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~  144 (406)
                      .+|..++++++|+.||++.. +++|..|+.  + .++.....                     ...+.|.++++++++..
T Consensus        35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~---------------------~~~~~p~~i~~~~~g~~   93 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES---------------------PLPGSPTHISTDHQGRF   93 (330)
T ss_pred             CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee---------------------cCCCCceEEEECCCCCE
Confidence            47899999999998898764 566755542  2 22222110                     11345889999994445


Q ss_pred             EEEEeCC-CcEEEEeCCC-CeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCCCC
Q 015463          145 LYIADAY-FGLMKVGPEG-GLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPS  221 (406)
Q Consensus       145 L~Vad~~-~gl~~~d~~~-~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~  221 (406)
                      ||++... +.|..++.+. +..........+  ...|..++++++|+ +|+++..                         
T Consensus        94 l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~--~~~~~~~~~~p~g~~l~v~~~~-------------------------  146 (330)
T PRK11028         94 LFSASYNANCVSVSPLDKDGIPVAPIQIIEG--LEGCHSANIDPDNRTLWVPCLK-------------------------  146 (330)
T ss_pred             EEEEEcCCCeEEEEEECCCCCCCCceeeccC--CCcccEeEeCCCCCEEEEeeCC-------------------------
Confidence            8888754 4566676542 211111111111  23477888999985 6666542                         


Q ss_pred             CCcccCCCCeEEEEeCCC-CeEEE------ecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCC
Q 015463          222 PIKITKDTGRVLKYDPTT-KQTTV------LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILP  294 (406)
Q Consensus       222 ~~~~~~~~g~l~~~d~~t-~~~~~------~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~  294 (406)
                             .+.|..||.++ +.+..      -......|.++++++|++++|++....+.|..|+++.. .+..+....+.
T Consensus       147 -------~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~-~~~~~~~~~~~  218 (330)
T PRK11028        147 -------EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP-HGEIECVQTLD  218 (330)
T ss_pred             -------CCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCC-CCCEEEEEEEe
Confidence                   35677777654 33221      11123567899999999999999887899999998631 22222222211


Q ss_pred             ---------CCCCceEECCCCC-EEEEEccC
Q 015463          295 ---------GYPDNVRTNEKGE-FWVAIHCR  315 (406)
Q Consensus       295 ---------g~pd~i~~d~~G~-lwv~~~~~  315 (406)
                               ..+..+.++++|+ +|++....
T Consensus       219 ~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~  249 (330)
T PRK11028        219 MMPADFSDTRWAADIHITPDGRHLYACDRTA  249 (330)
T ss_pred             cCCCcCCCCccceeEEECCCCCEEEEecCCC
Confidence                     1233578899998 77775433

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.13  E-value=1.2e-07  Score=92.01  Aligned_cols=207  Identities=19%  Similarity=0.217  Sum_probs=123.8

Q ss_pred             ccccccceeccCcccCcceEEEcCCCCeeEEEec----CCEEEEE--eCC--ceeEEEeecCCCccccCCCCCccccccc
Q 015463           55 NLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVA----DGRILFW--DGL--KWTDFAFTSNNRSELCNPKPIATSYLKN  126 (406)
Q Consensus        55 ~~l~~~~~~~~~~~~gpe~i~~d~~g~~ly~g~~----~g~I~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (406)
                      ..|.......  ....|..++++++++.||+...    +|+|..+  +.+  .++.+....                   
T Consensus        25 g~l~~~~~~~--~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~-------------------   83 (345)
T PF10282_consen   25 GTLTLVQTVA--EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP-------------------   83 (345)
T ss_dssp             TEEEEEEEEE--ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE-------------------
T ss_pred             CCceEeeeec--CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeec-------------------
Confidence            3444444322  4578999999999999999876    4577544  443  333332211                   


Q ss_pred             CCcCCcceEEEEeCCCCcEEEEeCCCc-EEEEeCCC-CeEEEcccc-------c--CCcccccccceEEcCCCC-EEEEe
Q 015463          127 EHICGRPLGLRFDKKTGDLYIADAYFG-LMKVGPEG-GLATSLATE-------A--EGVPLRFTNDLDIDDEGN-VYFTD  194 (406)
Q Consensus       127 ~~~~~~p~gi~~d~~~g~L~Vad~~~g-l~~~d~~~-~~~~~l~~~-------~--~~~~~~~~~~l~~d~dG~-ly~t~  194 (406)
                       ..+..|-.+++++++..||++....| +..++.+. +.+......       .  .......+..+.+++||+ +|+++
T Consensus        84 -~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d  162 (345)
T PF10282_consen   84 -SGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD  162 (345)
T ss_dssp             -ESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE
T ss_pred             -cCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe
Confidence             12456788999986667899987644 54444432 443322110       0  011234678899999985 77777


Q ss_pred             CCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCC--CCeEEE----ecccCCCcceEEEecCCCEEEEEe
Q 015463          195 SSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPT--TKQTTV----LLRNLQFPNGLSLSKDKSFFVFCE  268 (406)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~--t~~~~~----~~~~~~~~ngi~l~~d~~~l~v~~  268 (406)
                      ..                                ..+|+.|+.+  ++++..    -......|..+++++|++.+|++.
T Consensus       163 lG--------------------------------~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~  210 (345)
T PF10282_consen  163 LG--------------------------------ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVN  210 (345)
T ss_dssp             TT--------------------------------TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEE
T ss_pred             cC--------------------------------CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEec
Confidence            53                                2456555554  333433    124446688899999999999999


Q ss_pred             CCCCeEEEEEeeCCCCcceeee---ecCC----C--CCCceEECCCCC-EEEEEccCC
Q 015463          269 GSVGRLHKYWLIGEKAGNLEAF---AILP----G--YPDNVRTNEKGE-FWVAIHCRR  316 (406)
Q Consensus       269 t~~~~i~~~~~~g~~~~~~~~~---~~l~----g--~pd~i~~d~~G~-lwv~~~~~~  316 (406)
                      ...+.|..|++... .+..+..   ..++    +  .|..|++++||+ +||+.....
T Consensus       211 e~s~~v~v~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~  267 (345)
T PF10282_consen  211 ELSNTVSVFDYDPS-DGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSN  267 (345)
T ss_dssp             TTTTEEEEEEEETT-TTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTT
T ss_pred             CCCCcEEEEeeccc-CCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCC
Confidence            88899999988722 2222222   1221    1  356789999998 788876543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.11  E-value=6.4e-08  Score=93.88  Aligned_cols=216  Identities=17%  Similarity=0.207  Sum_probs=126.0

Q ss_pred             cccccceeccCcccCcceEEEcCCCCeeEEEec-CCEEEEEe--CC-ceeEEEeecCCCccccCCCCCcccccccCCcCC
Q 015463           56 LLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVA-DGRILFWD--GL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICG  131 (406)
Q Consensus        56 ~l~~~~~~~~~~~~gpe~i~~d~~g~~ly~g~~-~g~I~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (406)
                      .|........ .-..|-.++++++|+.+|++.+ +|.|..++  .+ ..............  .+       ........
T Consensus        75 ~L~~~~~~~~-~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~--g~-------~~~rq~~~  144 (345)
T PF10282_consen   75 TLTLLNSVPS-GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGS--GP-------NPDRQEGP  144 (345)
T ss_dssp             EEEEEEEEEE-SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEE--ES-------STTTTSST
T ss_pred             eeEEeeeecc-CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCC--CC-------cccccccc
Confidence            3444443332 3358899999999998999875 57775554  33 22222110000000  00       00112246


Q ss_pred             cceEEEEeCCCCcEEEEeCC-CcEEEEeCCC--CeEEEcccccCCcccccccceEEcCCC-CEEEEeCCCchhhhccccc
Q 015463          132 RPLGLRFDKKTGDLYIADAY-FGLMKVGPEG--GLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRQMQKE  207 (406)
Q Consensus       132 ~p~gi~~d~~~g~L~Vad~~-~gl~~~d~~~--~~~~~l~~~~~~~~~~~~~~l~~d~dG-~ly~t~~~~~~~~~~~~~~  207 (406)
                      .|+.+.+++++..+||+|.+ ..|+.++.+.  +++..... ..-.+...|..++++++| .+|+...-           
T Consensus       145 h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~-~~~~~G~GPRh~~f~pdg~~~Yv~~e~-----------  212 (345)
T PF10282_consen  145 HPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDS-IKVPPGSGPRHLAFSPDGKYAYVVNEL-----------  212 (345)
T ss_dssp             CEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEE-EECSTTSSEEEEEE-TTSSEEEEEETT-----------
T ss_pred             cceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeec-cccccCCCCcEEEEcCCcCEEEEecCC-----------
Confidence            68999999954569999876 4566666544  33443211 112234578999999998 57777632           


Q ss_pred             cccccccccCCCCCCCcccCCCCe--EEEEeCCCCeEEEec------c---cCCCcceEEEecCCCEEEEEeCCCCeEEE
Q 015463          208 NIPLQLCSSLNDPSPIKITKDTGR--VLKYDPTTKQTTVLL------R---NLQFPNGLSLSKDKSFFVFCEGSVGRLHK  276 (406)
Q Consensus       208 ~~~~~~~~e~~~~~~~~~~~~~g~--l~~~d~~t~~~~~~~------~---~~~~~ngi~l~~d~~~l~v~~t~~~~i~~  276 (406)
                                           .+.  ++.++..++.++...      .   +...+.+|+++||+++||++....+.|..
T Consensus       213 ---------------------s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~v  271 (345)
T PF10282_consen  213 ---------------------SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISV  271 (345)
T ss_dssp             ---------------------TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEE
T ss_pred             ---------------------CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEE
Confidence                                 233  455554467655432      1   11256789999999999999999999999


Q ss_pred             EEeeCCCCcceeeee--c-CCCCCCceEECCCCC-EEEEEccC
Q 015463          277 YWLIGEKAGNLEAFA--I-LPGYPDNVRTNEKGE-FWVAIHCR  315 (406)
Q Consensus       277 ~~~~g~~~~~~~~~~--~-l~g~pd~i~~d~~G~-lwv~~~~~  315 (406)
                      |.++.. .+..+...  . ....|.+++++++|+ +||+....
T Consensus       272 f~~d~~-~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s  313 (345)
T PF10282_consen  272 FDLDPA-TGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS  313 (345)
T ss_dssp             EEECTT-TTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT
T ss_pred             EEEecC-CCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC
Confidence            999632 23333322  1 233599999999999 67766543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=99.08  E-value=3.5e-09  Score=103.33  Aligned_cols=147  Identities=20%  Similarity=0.246  Sum_probs=91.5

Q ss_pred             cceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeC
Q 015463           71 PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA  150 (406)
Q Consensus        71 pe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~  150 (406)
                      -..+.+|.+|+ +|+|+.+| +++++..+-+-+...+.                   +..-+...+..|. +|+|||++.
T Consensus       167 V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~-------------------~~dk~I~al~~d~-qg~LWVGTd  224 (671)
T COG3292         167 VVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASP-------------------PLDKAINALIADV-QGRLWVGTD  224 (671)
T ss_pred             ceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCC-------------------cchhhHHHHHHHh-cCcEEEEec
Confidence            35678888888 99999987 99998762111111110                   0001233456676 899999985


Q ss_pred             CCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCC
Q 015463          151 YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTG  230 (406)
Q Consensus       151 ~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g  230 (406)
                       .|+++.++++.++..   .....+...+.-+..|.+|++|+++..                                  
T Consensus       225 -qGv~~~e~~G~~~sn---~~~~lp~~~I~ll~qD~qG~lWiGTen----------------------------------  266 (671)
T COG3292         225 -QGVYLQEAEGWRASN---WGPMLPSGNILLLVQDAQGELWIGTEN----------------------------------  266 (671)
T ss_pred             -cceEEEchhhccccc---cCCCCcchheeeeecccCCCEEEeecc----------------------------------
Confidence             699999998744332   222334455677888999999999853                                  


Q ss_pred             eEEEEeCCCCeEEEec----ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          231 RVLKYDPTTKQTTVLL----RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       231 ~l~~~d~~t~~~~~~~----~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                      ++.++....+.+....    .+....|++.++.|++ +|+. + .+++++|...
T Consensus       267 Gl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~-t-~~giv~~~~a  317 (671)
T COG3292         267 GLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVG-T-YGGIVRYLTA  317 (671)
T ss_pred             cceeEecCCCCccccccccCCccccccceeeccCCC-Eeee-c-cCceEEEecc
Confidence            3666655544433221    1223346677777775 6554 3 4678887654

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=99.06  E-value=3.4e-08  Score=92.89  Aligned_cols=190  Identities=20%  Similarity=0.234  Sum_probs=120.0

Q ss_pred             ceEEEEeCCCCcEEEEeCCC-------------cEEEEeCCCCeEEEccc-cc-CCcccccccceEEcCC------CCEE
Q 015463          133 PLGLRFDKKTGDLYIADAYF-------------GLMKVGPEGGLATSLAT-EA-EGVPLRFTNDLDIDDE------GNVY  191 (406)
Q Consensus       133 p~gi~~d~~~g~L~Vad~~~-------------gl~~~d~~~~~~~~l~~-~~-~~~~~~~~~~l~~d~d------G~ly  191 (406)
                      ++++.+|. .|+|||-|.+.             .|+.+|..++++..... .. .-.+..+.+++++|..      +.+|
T Consensus         3 V~~v~iD~-~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY   81 (287)
T PF03022_consen    3 VQRVQIDE-CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY   81 (287)
T ss_dssp             EEEEEE-T-TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred             ccEEEEcC-CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence            56889998 89999999762             49999999987533211 11 1124568899999872      5799


Q ss_pred             EEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCC--------------------
Q 015463          192 FTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQF--------------------  251 (406)
Q Consensus       192 ~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~--------------------  251 (406)
                      ++|++                                .++|+.||..+++...+.+....                    
T Consensus        82 ItD~~--------------------------------~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg  129 (287)
T PF03022_consen   82 ITDSG--------------------------------GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDG  129 (287)
T ss_dssp             EEETT--------------------------------TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTS
T ss_pred             EeCCC--------------------------------cCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCC
Confidence            99975                                24799999999887766433211                    


Q ss_pred             cceEEEec---CCCEEEEEeCCCCeEEEEEeeC---CCCc-------ceeeeecCCCCCCceEECCCCCEEEEEccCCcc
Q 015463          252 PNGLSLSK---DKSFFVFCEGSVGRLHKYWLIG---EKAG-------NLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSL  318 (406)
Q Consensus       252 ~ngi~l~~---d~~~l~v~~t~~~~i~~~~~~g---~~~~-------~~~~~~~l~g~pd~i~~d~~G~lwv~~~~~~~~  318 (406)
                      ..|+++++   |++.||+.-..+.+++++..+-   +...       ..+.+.+.++..+++++|++|++|.+....   
T Consensus       130 ~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~---  206 (287)
T PF03022_consen  130 IFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQ---  206 (287)
T ss_dssp             EEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCC---
T ss_pred             ccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCC---
Confidence            34678876   8889999988778898887541   1111       122333333456899999999999998654   


Q ss_pred             hhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCC-----CEEEEEECCCCCeeeceeEEEEe---CCEE
Q 015463          319 YSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEG-----KILQVLEDSKGKVVKAISEVEEK---DGKL  390 (406)
Q Consensus       319 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g-----~~~~~~~~~~g~~~~~~s~~~~~---~g~L  390 (406)
                                                         ..|.+.++++     +.-...+++...  ....++...   +|+|
T Consensus       207 -----------------------------------~aI~~w~~~~~~~~~~~~~l~~d~~~l--~~pd~~~i~~~~~g~L  249 (287)
T PF03022_consen  207 -----------------------------------NAIGCWDPDGPYTPENFEILAQDPRTL--QWPDGLKIDPEGDGYL  249 (287)
T ss_dssp             -----------------------------------TEEEEEETTTSB-GCCEEEEEE-CC-G--SSEEEEEE-T--TS-E
T ss_pred             -----------------------------------CeEEEEeCCCCcCccchheeEEcCcee--eccceeeeccccCceE
Confidence                                               2377888887     444455555432  244555443   5999


Q ss_pred             EEecC
Q 015463          391 WMGSV  395 (406)
Q Consensus       391 y~Gs~  395 (406)
                      |+-+-
T Consensus       250 ~v~sn  254 (287)
T PF03022_consen  250 WVLSN  254 (287)
T ss_dssp             EEEE-
T ss_pred             EEEEC
Confidence            99774

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.03  E-value=2.2e-07  Score=86.35  Aligned_cols=214  Identities=16%  Similarity=0.176  Sum_probs=131.8

Q ss_pred             ccccccceeccCcccCcceEEEcCCCCeeEEEecCC-EEEEEeC--C-ceeE----EEeecCCCccccCCCCCccccccc
Q 015463           55 NLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADG-RILFWDG--L-KWTD----FAFTSNNRSELCNPKPIATSYLKN  126 (406)
Q Consensus        55 ~~l~~~~~~~~~~~~gpe~i~~d~~g~~ly~g~~~g-~I~~~~~--~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  126 (406)
                      ++|+...+... ....|-.+++|++|+.+|++.+.. .|.++..  + ....    +.....+ +             ..
T Consensus        76 G~Lt~ln~~~~-~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~-p-------------~~  140 (346)
T COG2706          76 GRLTFLNRQTL-PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSG-P-------------HE  140 (346)
T ss_pred             CeEEEeecccc-CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCC-C-------------Cc
Confidence            34544433322 235678999999999889887764 4444332  2 1111    1111110 0             00


Q ss_pred             CCcCCcceEEEEeCCCCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhcc
Q 015463          127 EHICGRPLGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQM  204 (406)
Q Consensus       127 ~~~~~~p~gi~~d~~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~  204 (406)
                      +.....++...+++++..|++.|-+ ..|+.|+.+.|+++..... .-.+...|..|++.++|. .|+..          
T Consensus       141 rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~-~v~~G~GPRHi~FHpn~k~aY~v~----------  209 (346)
T COG2706         141 RQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPA-EVKPGAGPRHIVFHPNGKYAYLVN----------  209 (346)
T ss_pred             cccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccc-ccCCCCCcceEEEcCCCcEEEEEe----------
Confidence            0011225667788844467888766 5788887777765543221 224556799999999996 45543          


Q ss_pred             ccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec------ccCCC---cceEEEecCCCEEEEEeCCCCeEE
Q 015463          205 QKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL------RNLQF---PNGLSLSKDKSFFVFCEGSVGRLH  275 (406)
Q Consensus       205 ~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~------~~~~~---~ngi~l~~d~~~l~v~~t~~~~i~  275 (406)
                                 |         ...+=-++.||+..++++.+.      +.+..   ...|.+++||++||+++.+.+.|+
T Consensus       210 -----------E---------L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~  269 (346)
T COG2706         210 -----------E---------LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIA  269 (346)
T ss_pred             -----------c---------cCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEE
Confidence                       1         111223778888878887663      22222   335789999999999999989999


Q ss_pred             EEEeeCCCCcceeeee--cCCCC-CCceEECCCCCEEEEEccC
Q 015463          276 KYWLIGEKAGNLEAFA--ILPGY-PDNVRTNEKGEFWVAIHCR  315 (406)
Q Consensus       276 ~~~~~g~~~~~~~~~~--~l~g~-pd~i~~d~~G~lwv~~~~~  315 (406)
                      .|.++ +..+..+.+.  ...|. |....+++.|++.++.+..
T Consensus       270 ~f~V~-~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~  311 (346)
T COG2706         270 VFSVD-PDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQK  311 (346)
T ss_pred             EEEEc-CCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccC
Confidence            99887 3334444433  23454 9999999999988887654

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=99.01  E-value=8.4e-08  Score=92.34  Aligned_cols=169  Identities=21%  Similarity=0.244  Sum_probs=103.3

Q ss_pred             ccCcceEEEcCCCCeeEEEecCCEEEEEeCC-ce-eEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC---C
Q 015463           68 IQGPESMAFDPLGRGPYTGVADGRILFWDGL-KW-TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK---T  142 (406)
Q Consensus        68 ~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~---~  142 (406)
                      +..|.+|++.++|+ +|++...|+|++++.+ .. ..+.... .               .........+||+++++   +
T Consensus         1 L~~P~~~a~~pdG~-l~v~e~~G~i~~~~~~g~~~~~v~~~~-~---------------v~~~~~~gllgia~~p~f~~n   63 (331)
T PF07995_consen    1 LNNPRSMAFLPDGR-LLVAERSGRIWVVDKDGSLKTPVADLP-E---------------VFADGERGLLGIAFHPDFASN   63 (331)
T ss_dssp             ESSEEEEEEETTSC-EEEEETTTEEEEEETTTEECEEEEE-T-T---------------TBTSTTBSEEEEEE-TTCCCC
T ss_pred             CCCceEEEEeCCCc-EEEEeCCceEEEEeCCCcCcceecccc-c---------------ccccccCCcccceeccccCCC
Confidence            35799999999998 7888889999999955 32 3333321 1               01112345799999982   4


Q ss_pred             CcEEEEeCC---------CcEEEEeCCCC--e---EEEcccccC--CcccccccceEEcCCCCEEEEeCCCchhhhcccc
Q 015463          143 GDLYIADAY---------FGLMKVGPEGG--L---ATSLATEAE--GVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQK  206 (406)
Q Consensus       143 g~L~Vad~~---------~gl~~~d~~~~--~---~~~l~~~~~--~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~  206 (406)
                      +.|||+...         ..|.|+..+.+  .   .+.+.....  .........|++++||.||++..+....  +.  
T Consensus        64 ~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~--~~--  139 (331)
T PF07995_consen   64 GYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGND--DN--  139 (331)
T ss_dssp             -EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTG--GG--
T ss_pred             CEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCc--cc--
Confidence            889998763         25777765544  2   122222111  1234556679999999999997542110  00  


Q ss_pred             ccccccccccCCCCCCCcccCCCCeEEEEeCCCC-------------eEEEecccCCCcceEEEecCCCEEEEEeCCCC
Q 015463          207 ENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTK-------------QTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVG  272 (406)
Q Consensus       207 ~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~-------------~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~  272 (406)
                          .++.           ....|.++|++++..             ..+.+..++.++.++++++....+|+++.+..
T Consensus       140 ----~~~~-----------~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~  203 (331)
T PF07995_consen  140 ----AQDP-----------NSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPD  203 (331)
T ss_dssp             ----GCST-----------TSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SS
T ss_pred             ----cccc-----------ccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCC
Confidence                1111           233588999998754             34677889999999999998557888886543

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.95  E-value=7.5e-08  Score=90.97  Aligned_cols=151  Identities=18%  Similarity=0.238  Sum_probs=98.3

Q ss_pred             cccCcceEEEcCCCCeeEEEecC------------CEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcc
Q 015463           67 QIQGPESMAFDPLGRGPYTGVAD------------GRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRP  133 (406)
Q Consensus        67 ~~~gpe~i~~d~~g~~ly~g~~~------------g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  133 (406)
                      ....|.+..++++|+ +|+++..            |.+||+++. +.+.....                      ....|
T Consensus       109 ~~~r~ND~~v~pdG~-~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~----------------------~~~~~  165 (307)
T COG3386         109 PLNRPNDGVVDPDGR-IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDD----------------------DLTIP  165 (307)
T ss_pred             CcCCCCceeEcCCCC-EEEeCCCccccCccccCCcceEEEEcCCCCEEEeecC----------------------cEEec
Confidence            446788999999999 8888665            568999865 33333211                      02458


Q ss_pred             eEEEEeCCCCcEEEEeCC-CcEEEEeCCC--CeEEEcc-cccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccc
Q 015463          134 LGLRFDKKTGDLYIADAY-FGLMKVGPEG--GLATSLA-TEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENI  209 (406)
Q Consensus       134 ~gi~~d~~~g~L~Vad~~-~gl~~~d~~~--~~~~~l~-~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~  209 (406)
                      +||++++++..||++|+. +.|++++.+-  +.+..-. .......-..|.++++|.+|++|++...             
T Consensus       166 NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~-------------  232 (307)
T COG3386         166 NGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW-------------  232 (307)
T ss_pred             CceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc-------------
Confidence            999999955589999997 6799987652  2111000 0000112246889999999999974321             


Q ss_pred             cccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEe-cCCCEEEEEeCCC
Q 015463          210 PLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLS-KDKSFFVFCEGSV  271 (406)
Q Consensus       210 ~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~-~d~~~l~v~~t~~  271 (406)
                                        ..++|.+|+|+.+....+.-....+..+++. ++.+.|||+....
T Consensus       233 ------------------~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~  277 (307)
T COG3386         233 ------------------GGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS  277 (307)
T ss_pred             ------------------CCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence                              1248999999955555544333455556554 5788999987654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.91  E-value=1.2e-06  Score=84.46  Aligned_cols=191  Identities=9%  Similarity=0.046  Sum_probs=114.6

Q ss_pred             CcceEEEcCCCCeeEEEec-CCEEEEEeCC--c-eeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcE
Q 015463           70 GPESMAFDPLGRGPYTGVA-DGRILFWDGL--K-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL  145 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~-~g~I~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L  145 (406)
                      .|..++++++|+.+|++.. ++.|..++.+  + .......                   . .....|++++++++...+
T Consensus        81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~-------------------~-~~~~~~~~~~~~p~g~~l  140 (330)
T PRK11028         81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQI-------------------I-EGLEGCHSANIDPDNRTL  140 (330)
T ss_pred             CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceee-------------------c-cCCCcccEeEeCCCCCEE
Confidence            6899999999998888765 6777766543  1 1110000                   0 012347889999944568


Q ss_pred             EEEeCC-CcEEEEeCCC-CeEEEcc-cccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCCCC
Q 015463          146 YIADAY-FGLMKVGPEG-GLATSLA-TEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPS  221 (406)
Q Consensus       146 ~Vad~~-~gl~~~d~~~-~~~~~l~-~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~  221 (406)
                      |+++.. +.|..+|.++ +.+.... ..........|.+++++++|+ +|+++..                         
T Consensus       141 ~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-------------------------  195 (330)
T PRK11028        141 WVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-------------------------  195 (330)
T ss_pred             EEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC-------------------------
Confidence            888876 5577887754 3322110 000111234588999999985 6676532                         


Q ss_pred             CCcccCCCCeEEEEeCC--CCeEEEecc---------cCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeee
Q 015463          222 PIKITKDTGRVLKYDPT--TKQTTVLLR---------NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAF  290 (406)
Q Consensus       222 ~~~~~~~~g~l~~~d~~--t~~~~~~~~---------~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~  290 (406)
                             .+.|..|+.+  +++.+....         +...+.+++++||++++|+++...+.|..++++.. .+..+..
T Consensus       196 -------~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~-~~~~~~~  267 (330)
T PRK11028        196 -------NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED-GSVLSFE  267 (330)
T ss_pred             -------CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC-CCeEEEe
Confidence                   2455555443  444433211         11233468899999999999777788888887522 1222222


Q ss_pred             ec--CCCCCCceEECCCCC-EEEEEc
Q 015463          291 AI--LPGYPDNVRTNEKGE-FWVAIH  313 (406)
Q Consensus       291 ~~--l~g~pd~i~~d~~G~-lwv~~~  313 (406)
                      ..  ....|.++.++++|+ +|++..
T Consensus       268 ~~~~~~~~p~~~~~~~dg~~l~va~~  293 (330)
T PRK11028        268 GHQPTETQPRGFNIDHSGKYLIAAGQ  293 (330)
T ss_pred             EEEeccccCCceEECCCCCEEEEEEc
Confidence            22  223588999999998 666653

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=98.88  E-value=3.9e-08  Score=96.20  Aligned_cols=228  Identities=18%  Similarity=0.228  Sum_probs=122.2

Q ss_pred             CCcceEEEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCccc-ccccceEEcCCCCEEEEeCCCchhhhcccccc
Q 015463          130 CGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPL-RFTNDLDIDDEGNVYFTDSSTNYQRRQMQKEN  208 (406)
Q Consensus       130 ~~~p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~-~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~  208 (406)
                      ..+...+.+|. +|+|||++. +||++||..++++-.+...    ++ ..++.++.|..|.+|+++..            
T Consensus       164 d~~V~aLv~D~-~g~lWvgT~-dGL~~fd~~~gkalql~s~----~~dk~I~al~~d~qg~LWVGTdq------------  225 (671)
T COG3292         164 DTPVVALVFDA-NGRLWVGTP-DGLSYFDAGRGKALQLASP----PLDKAINALIADVQGRLWVGTDQ------------  225 (671)
T ss_pred             Cccceeeeeec-cCcEEEecC-CcceEEccccceEEEcCCC----cchhhHHHHHHHhcCcEEEEecc------------
Confidence            34456788998 899999975 6999999998877655432    22 45788899999999999853            


Q ss_pred             ccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCccee
Q 015463          209 IPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLE  288 (406)
Q Consensus       209 ~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~  288 (406)
                                            +++++++++.+.......+..-+-..+..|.+.-+|..| .++++++.+.........
T Consensus       226 ----------------------Gv~~~e~~G~~~sn~~~~lp~~~I~ll~qD~qG~lWiGT-enGl~r~~l~rq~Lq~~~  282 (671)
T COG3292         226 ----------------------GVYLQEAEGWRASNWGPMLPSGNILLLVQDAQGELWIGT-ENGLWRTRLPRQGLQIPL  282 (671)
T ss_pred             ----------------------ceEEEchhhccccccCCCCcchheeeeecccCCCEEEee-cccceeEecCCCCccccc
Confidence                                  499998886333322222222222333345444445445 356777776532111110


Q ss_pred             eeecCCCC--CCceEECCCCCEEEEEccCCcchhh--hhh---cChh---hhhhhhccCccceeeeeEeecCcceEEEEE
Q 015463          289 AFAILPGY--PDNVRTNEKGEFWVAIHCRRSLYSH--LMA---LYPK---IRHFLLKLPISAKTHYLIHVGGRLHAMAVK  358 (406)
Q Consensus       289 ~~~~l~g~--pd~i~~d~~G~lwv~~~~~~~~~~~--~~~---~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~  358 (406)
                      . ....++  ...+..|.+|.+|+++..+...+..  ++.   .++.   ........+.-..  ...+...+.+-..++
T Consensus       283 ~-~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~--~~v~~~ns~g~L~va  359 (671)
T COG3292         283 S-KMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLS--WGVRQLNSIGELMVA  359 (671)
T ss_pred             c-ccCCccccccceeeccCCCEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcc--cceeeccccceEEEe
Confidence            0 001121  2456789999999999875332211  000   0111   1111111110000  001111111112222


Q ss_pred             ECCCCCEEEEEECCCCCeeeceeEEE-EeCCEEEEecCCCCeEEEEeC
Q 015463          359 YSPEGKILQVLEDSKGKVVKAISEVE-EKDGKLWMGSVLMPFVAVYDL  405 (406)
Q Consensus       359 ~d~~g~~~~~~~~~~g~~~~~~s~~~-~~~g~Ly~Gs~~~~~i~~~~~  405 (406)
                      =+..|.++.+.+..-|.   .++.++ ..+|.||+||. ++++.+++.
T Consensus       360 n~stG~~v~sv~q~Rg~---nit~~~~d~~g~lWlgs~-q~GLsrl~n  403 (671)
T COG3292         360 NGSTGELVRSVHQLRGM---NITTTLEDSRGRLWLGSM-QNGLSRLDN  403 (671)
T ss_pred             cCCCCcEEEEeeecccc---ccchhhhccCCcEEEEec-ccchhhhcc
Confidence            23346666665443343   344443 34789999998 667887763

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.83  E-value=1.4e-05  Score=74.53  Aligned_cols=196  Identities=15%  Similarity=0.205  Sum_probs=116.8

Q ss_pred             cccCcceEEEcCCCCeeEEEecC---CEE--EEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEe
Q 015463           67 QIQGPESMAFDPLGRGPYTGVAD---GRI--LFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFD  139 (406)
Q Consensus        67 ~~~gpe~i~~d~~g~~ly~g~~~---g~I--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d  139 (406)
                      .+..|.-++++++++.||+....   |+|  ++||.+  .++.+....                    ..+..|--+++|
T Consensus        38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~--------------------~~g~~p~yvsvd   97 (346)
T COG2706          38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT--------------------LPGSPPCYVSVD   97 (346)
T ss_pred             ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc--------------------cCCCCCeEEEEC
Confidence            45789999999999889998665   555  455554  333332111                    112234678899


Q ss_pred             CCCC-cEEEEeCCCcEEE---EeCCCCeEEEccc----ccCC---c-ccccccceEEcCCCCEEEE-eCCCchhhhcccc
Q 015463          140 KKTG-DLYIADAYFGLMK---VGPEGGLATSLAT----EAEG---V-PLRFTNDLDIDDEGNVYFT-DSSTNYQRRQMQK  206 (406)
Q Consensus       140 ~~~g-~L~Vad~~~gl~~---~d~~~~~~~~l~~----~~~~---~-~~~~~~~l~~d~dG~ly~t-~~~~~~~~~~~~~  206 (406)
                      + +| -|++|....|-+.   +..+ |.+.....    ...+   . ....+....++++|++.++ |-+          
T Consensus        98 ~-~g~~vf~AnY~~g~v~v~p~~~d-G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG----------  165 (346)
T COG2706          98 E-DGRFVFVANYHSGSVSVYPLQAD-GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG----------  165 (346)
T ss_pred             C-CCCEEEEEEccCceEEEEEcccC-CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC----------
Confidence            8 66 4677766555333   3333 33322211    1111   0 1122556778999965554 432          


Q ss_pred             ccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec----ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCC
Q 015463          207 ENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL----RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE  282 (406)
Q Consensus       207 ~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~----~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~  282 (406)
                                            .-+++.|+.+.|.++...    ..-..|.-|++.|++++.|+...-++.|..+..++.
T Consensus       166 ----------------------~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~  223 (346)
T COG2706         166 ----------------------TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA  223 (346)
T ss_pred             ----------------------CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence                                  246777777777665432    334567779999999999999887888888877643


Q ss_pred             CCcceeeeecCCCCCC---------ceEECCCCCEEEEEccCCc
Q 015463          283 KAGNLEAFAILPGYPD---------NVRTNEKGEFWVAIHCRRS  317 (406)
Q Consensus       283 ~~~~~~~~~~l~g~pd---------~i~~d~~G~lwv~~~~~~~  317 (406)
                       .++.+.+..+.-+|.         .|.++++|++.-+.+.+..
T Consensus       224 -~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~d  266 (346)
T COG2706         224 -VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHD  266 (346)
T ss_pred             -CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCC
Confidence             455444433222332         3678999996666555533

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.80  E-value=2.6e-05  Score=73.01  Aligned_cols=171  Identities=16%  Similarity=0.194  Sum_probs=100.7

Q ss_pred             CeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-EEEEeCC-CcEEEEe
Q 015463           81 RGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYIADAY-FGLMKVG  158 (406)
Q Consensus        81 ~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-L~Vad~~-~gl~~~d  158 (406)
                      ++++++..++.|..|+...-.......                     ....|.++++++ +|. +|++... +.|..+|
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~---------------------~~~~~~~l~~~~-dg~~l~~~~~~~~~v~~~d   59 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFP---------------------VGQRPRGITLSK-DGKLLYVCASDSDTIQVID   59 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEE---------------------CCCCCCceEECC-CCCEEEEEECCCCeEEEEE
Confidence            445566778999999875211111100                     023466788998 554 6776544 5688999


Q ss_pred             CCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeC
Q 015463          159 PEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDP  237 (406)
Q Consensus       159 ~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~  237 (406)
                      .++++.......  +   ..+..++++++|+ +|++...                                .+.+..+|.
T Consensus        60 ~~~~~~~~~~~~--~---~~~~~~~~~~~g~~l~~~~~~--------------------------------~~~l~~~d~  102 (300)
T TIGR03866        60 LATGEVIGTLPS--G---PDPELFALHPNGKILYIANED--------------------------------DNLVTVIDI  102 (300)
T ss_pred             CCCCcEEEeccC--C---CCccEEEECCCCCEEEEEcCC--------------------------------CCeEEEEEC
Confidence            887765432111  1   1245678889886 5555421                                367999999


Q ss_pred             CCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCCCC-EEEEEc
Q 015463          238 TTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE-FWVAIH  313 (406)
Q Consensus       238 ~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~-lwv~~~  313 (406)
                      ++++..........+.++++++|++.++++......+..++...   +...........|..+.++++|. +|++..
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~---~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  176 (300)
T TIGR03866       103 ETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT---YEIVDNVLVDQRPRFAEFTADGKELWVSSE  176 (300)
T ss_pred             CCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCC---CeEEEEEEcCCCccEEEECCCCCEEEEEcC
Confidence            87654332332345688999999998877765444455556432   11111111233466788888988 445543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.74  E-value=3.1e-06  Score=83.19  Aligned_cols=186  Identities=19%  Similarity=0.191  Sum_probs=129.4

Q ss_pred             ccCcceEEEcCCCCeeEEEecC-CEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc
Q 015463           68 IQGPESMAFDPLGRGPYTGVAD-GRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (406)
Q Consensus        68 ~~gpe~i~~d~~g~~ly~g~~~-g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~  144 (406)
                      ...|.++++++.|+.+|+-+.+ +.|..++..  ...+..                       .....|.+++++++++.
T Consensus        73 ~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~-----------------------~vG~~P~~~~~~~~~~~  129 (381)
T COG3391          73 GVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSI-----------------------PVGLGPVGLAVDPDGKY  129 (381)
T ss_pred             CccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEe-----------------------eeccCCceEEECCCCCE
Confidence            3778999999988877876644 778888854  222211                       11236899999996679


Q ss_pred             EEEEeCC---CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCCC
Q 015463          145 LYIADAY---FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDP  220 (406)
Q Consensus       145 L~Vad~~---~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~  220 (406)
                      +||++..   +.+..+|..+++....  ...|.   .|.+++++++|+ +|+++..                        
T Consensus       130 vYV~n~~~~~~~vsvid~~t~~~~~~--~~vG~---~P~~~a~~p~g~~vyv~~~~------------------------  180 (381)
T COG3391         130 VYVANAGNGNNTVSVIDAATNKVTAT--IPVGN---TPTGVAVDPDGNKVYVTNSD------------------------  180 (381)
T ss_pred             EEEEecccCCceEEEEeCCCCeEEEE--EecCC---CcceEEECCCCCeEEEEecC------------------------
Confidence            9999994   5689999988765443  11221   457899999997 9999853                        


Q ss_pred             CCCcccCCCCeEEEEeCCCCeEEE-----ecccCCCcceEEEecCCCEEEEEeCCC--CeEEEEEeeCCCCcceeeeecC
Q 015463          221 SPIKITKDTGRVLKYDPTTKQTTV-----LLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGNLEAFAIL  293 (406)
Q Consensus       221 ~~~~~~~~~g~l~~~d~~t~~~~~-----~~~~~~~~ngi~l~~d~~~l~v~~t~~--~~i~~~~~~g~~~~~~~~~~~l  293 (406)
                              .+.|..+|.++.....     .......|.++++++|++.+|+++...  +.+.+++...........-...
T Consensus       181 --------~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~  252 (381)
T COG3391         181 --------DNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGS  252 (381)
T ss_pred             --------CCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccccc
Confidence                    3779999988766653     233456788999999999999999876  5888888653221111111122


Q ss_pred             CCCCCceEECCCCCE-EEEEcc
Q 015463          294 PGYPDNVRTNEKGEF-WVAIHC  314 (406)
Q Consensus       294 ~g~pd~i~~d~~G~l-wv~~~~  314 (406)
                      . .|.++..+++|.. |++...
T Consensus       253 ~-~~~~v~~~p~g~~~yv~~~~  273 (381)
T COG3391         253 G-APRGVAVDPAGKAAYVANSQ  273 (381)
T ss_pred             C-CCCceeECCCCCEEEEEecC
Confidence            2 5889999999984 555433

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=98.68  E-value=6.3e-07  Score=87.64  Aligned_cols=140  Identities=23%  Similarity=0.329  Sum_probs=94.5

Q ss_pred             CCcceEEEEeCCCCcEEEEeCC-------------CcEEEEeCCC--CeE---EEcccccCCcccccccceEEcCCCCEE
Q 015463          130 CGRPLGLRFDKKTGDLYIADAY-------------FGLMKVGPEG--GLA---TSLATEAEGVPLRFTNDLDIDDEGNVY  191 (406)
Q Consensus       130 ~~~p~gi~~d~~~g~L~Vad~~-------------~gl~~~d~~~--~~~---~~l~~~~~~~~~~~~~~l~~d~dG~ly  191 (406)
                      ...|.+|++|+ +|+|||++..             ..|++++...  |+.   +.+..     .+..|+++++.++| +|
T Consensus        13 ~~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-----~l~~p~Gi~~~~~G-ly   85 (367)
T TIGR02604        13 LRNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-----ELSMVTGLAVAVGG-VY   85 (367)
T ss_pred             cCCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-----CCCCccceeEecCC-EE
Confidence            46699999998 8999999741             2577776432  222   33322     24578999999999 99


Q ss_pred             EEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEE-eCCC-----CeEEEecccC--------CCcceEEE
Q 015463          192 FTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKY-DPTT-----KQTTVLLRNL--------QFPNGLSL  257 (406)
Q Consensus       192 ~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~-d~~t-----~~~~~~~~~~--------~~~ngi~l  257 (406)
                      +++.                                  .+|++| |.+.     ++.+++.+++        ..++++++
T Consensus        86 V~~~----------------------------------~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~  131 (367)
T TIGR02604        86 VATP----------------------------------PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAW  131 (367)
T ss_pred             EeCC----------------------------------CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceE
Confidence            9874                                  246666 3221     1444444332        34789999


Q ss_pred             ecCCCEEEEEeCC-------------------CCeEEEEEeeCCCCcceeeeecCCCCCCceEECCCCCEEEEEcc
Q 015463          258 SKDKSFFVFCEGS-------------------VGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHC  314 (406)
Q Consensus       258 ~~d~~~l~v~~t~-------------------~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~lwv~~~~  314 (406)
                      .+||. ||++...                   .++|++++.++   +..++++.....|.++++|++|++|++.+.
T Consensus       132 gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg---~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~  203 (367)
T TIGR02604       132 GPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDG---GKLRVVAHGFQNPYGHSVDSWGDVFFCDND  203 (367)
T ss_pred             CCCCC-EEEecccCCCceeccCCCccCcccccCceEEEEecCC---CeEEEEecCcCCCccceECCCCCEEEEccC
Confidence            99985 7776542                   14688888764   345677653445899999999999998764

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=98.65  E-value=6.7e-06  Score=87.07  Aligned_cols=199  Identities=19%  Similarity=0.299  Sum_probs=123.0

Q ss_pred             ceEEEcC-CCCeeEEE-ecCCEEEEEeCC-------ceeEEEeecCCCccccCCCCCccccccc--CCcCCcceEEEEeC
Q 015463           72 ESMAFDP-LGRGPYTG-VADGRILFWDGL-------KWTDFAFTSNNRSELCNPKPIATSYLKN--EHICGRPLGLRFDK  140 (406)
Q Consensus        72 e~i~~d~-~g~~ly~g-~~~g~I~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~p~gi~~d~  140 (406)
                      --||++| +|. ||++ ....+|+|+..-       .+..++.    .++.|-+..+.|+.-..  +.....|.||++|+
T Consensus       410 Yy~AvsPvdgt-lyvSdp~s~qv~rv~sl~~~d~~~N~evvaG----~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk  484 (1899)
T KOG4659|consen  410 YYIAVSPVDGT-LYVSDPLSKQVWRVSSLEPQDSRNNYEVVAG----DGEVCLPADESCGDGALAQDAQLIFPKGIAFDK  484 (1899)
T ss_pred             eEEEecCcCce-EEecCCCcceEEEeccCCccccccCeeEEec----cCcCccccccccCcchhcccceeccCCceeEcc
Confidence            4678887 676 7765 556789998532       2333432    24556665555543332  33467799999999


Q ss_pred             CCCcEEEEeCCCcEEEEeCCCCeEEEcccc---------------cCCcccccccceEEcC-CCCEEEEeCCCchhhhcc
Q 015463          141 KTGDLYIADAYFGLMKVGPEGGLATSLATE---------------AEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQM  204 (406)
Q Consensus       141 ~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~---------------~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~  204 (406)
                       +|+||.+|. ..|..+|.. |.+..+...               .....+..|.+|+++| |+.+|+-|..        
T Consensus       485 -~g~lYfaD~-t~IR~iD~~-giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~n--------  553 (1899)
T KOG4659|consen  485 -MGNLYFADG-TRIRVIDTT-GIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTN--------  553 (1899)
T ss_pred             -CCcEEEecc-cEEEEeccC-ceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeecc--------
Confidence             899999995 468888864 445544321               1122456899999999 8899998853        


Q ss_pred             ccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec---------------------ccCCCcceEEEecCCCE
Q 015463          205 QKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL---------------------RNLQFPNGLSLSKDKSF  263 (406)
Q Consensus       205 ~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~---------------------~~~~~~ngi~l~~d~~~  263 (406)
                                                -+++.++. +++....                     ..+..+..|+++++| .
T Consensus       554 --------------------------vvlrit~~-~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G-~  605 (1899)
T KOG4659|consen  554 --------------------------VVLRITVV-HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDG-A  605 (1899)
T ss_pred             --------------------------eEEEEccC-ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCc-e
Confidence                                      24444433 2222211                     123345789999999 4


Q ss_pred             EEEEeCCCCeEEEEEeeCCCCcceeeeec--------------------------CCCCCCceEECCCCCEEEEEccC
Q 015463          264 FVFCEGSVGRLHKYWLIGEKAGNLEAFAI--------------------------LPGYPDNVRTNEKGEFWVAIHCR  315 (406)
Q Consensus       264 l~v~~t~~~~i~~~~~~g~~~~~~~~~~~--------------------------l~g~pd~i~~d~~G~lwv~~~~~  315 (406)
                      |||+|+.+.+|-++..-+. .++.-+++.                          .-..|..+++.+||.++||..+.
T Consensus       606 lyvaEsD~rriNrvr~~~t-dg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN  682 (1899)
T KOG4659|consen  606 LYVAESDGRRINRVRKLST-DGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGN  682 (1899)
T ss_pred             EEEEeccchhhhheEEecc-CceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCc
Confidence            9999998877766543321 011111110                          01136678999999999997653

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=98.65  E-value=2.9e-06  Score=83.86  Aligned_cols=201  Identities=15%  Similarity=0.169  Sum_probs=114.1

Q ss_pred             ccCcccCcceEEEcCCCCeeEEEec-CCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeC
Q 015463           64 FLNQIQGPESMAFDPLGRGPYTGVA-DGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK  140 (406)
Q Consensus        64 ~~~~~~gpe~i~~d~~g~~ly~g~~-~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~  140 (406)
                      +..++..|.+|++.++|+ +|+.-. .|+|++++..  ..+.+....    ..           ......+.++||++++
T Consensus        25 va~GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l~----~v-----------~~~~ge~GLlglal~P   88 (454)
T TIGR03606        25 LLSGLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTLP----EI-----------VNDAQHNGLLGLALHP   88 (454)
T ss_pred             EECCCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecCC----ce-----------eccCCCCceeeEEECC
Confidence            345789999999999998 677666 6999999765  222221111    00           0011246689999986


Q ss_pred             C------CCcEEEEeC----------CCcEEEEeCCC--Ce---EEEcccccCCcccccccceEEcCCCCEEEEeCCCch
Q 015463          141 K------TGDLYIADA----------YFGLMKVGPEG--GL---ATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNY  199 (406)
Q Consensus       141 ~------~g~L~Vad~----------~~gl~~~d~~~--~~---~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~  199 (406)
                      +      ++.|||+-+          ...|.|+..+.  ..   .+.+.........++-..|++++||.||++......
T Consensus        89 dF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g~  168 (454)
T TIGR03606        89 DFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQGR  168 (454)
T ss_pred             CccccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCCC
Confidence            3      346899842          24577776432  11   122222222222345667999999999998754311


Q ss_pred             hhh-ccccccccccccccCCCCCCC---cccCCCCeEEEEeCCCC-----------eEEEecccCCCcceEEEecCCCEE
Q 015463          200 QRR-QMQKENIPLQLCSSLNDPSPI---KITKDTGRVLKYDPTTK-----------QTTVLLRNLQFPNGLSLSKDKSFF  264 (406)
Q Consensus       200 ~~~-~~~~~~~~~~~~~e~~~~~~~---~~~~~~g~l~~~d~~t~-----------~~~~~~~~~~~~ngi~l~~d~~~l  264 (406)
                      ... +.... ...+.+   ..++++   ......|.|+|+|++..           +.+.+..++.+|.|++++|++ .|
T Consensus       169 ~~~~n~~~~-~~aQ~~---~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G-~L  243 (454)
T TIGR03606       169 NQGANFFLP-NQAQHT---PTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDG-TL  243 (454)
T ss_pred             CCcccccCc-chhccc---cccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCC-CE
Confidence            000 00000 000000   000001   11234688999998743           236778899999999999965 58


Q ss_pred             EEEeCCCC---eEEEEEeeCCCCcc
Q 015463          265 VFCEGSVG---RLHKYWLIGEKAGN  286 (406)
Q Consensus       265 ~v~~t~~~---~i~~~~~~g~~~~~  286 (406)
                      |++|.+..   .|.++. .|.+.|.
T Consensus       244 w~~e~Gp~~~DEiN~I~-~G~NYGW  267 (454)
T TIGR03606       244 YASEQGPNSDDELNIIV-KGGNYGW  267 (454)
T ss_pred             EEEecCCCCCcEEEEec-cCCcCCC
Confidence            89887553   344443 2444443

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=98.63  E-value=7e-05  Score=72.58  Aligned_cols=188  Identities=13%  Similarity=0.049  Sum_probs=105.1

Q ss_pred             cccCcceEEEcCCCCeeEEEecCCEEEEEeCC--------ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEE
Q 015463           67 QIQGPESMAFDPLGRGPYTGVADGRILFWDGL--------KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRF  138 (406)
Q Consensus        67 ~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~  138 (406)
                      ++..|.+++..++|.++.+....|.+..+...        ....+...+.+..      ...............++++++
T Consensus        65 gLe~p~~~~~lP~G~~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~~~~Gl------l~~al~~~fa~~~~~~~~~a~  138 (399)
T COG2133          65 GLEHPWGLARLPDGVLLVTERPTGRLRLISDGGSASPPVSTVPIVLLRGQGGL------LDIALSPDFAQGRLVYFGISE  138 (399)
T ss_pred             cccCchhheecCCceEEEEccCCccEEEecCCCcccccccccceEEeccCCCc------cceEecccccccceeeeEEEe
Confidence            48899999999999534444443777766533        1111111110000      000000011222344778877


Q ss_pred             eCCCCcEEEEeCCCcEEEEeCCCCeE---EEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccc
Q 015463          139 DKKTGDLYIADAYFGLMKVGPEGGLA---TSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCS  215 (406)
Q Consensus       139 d~~~g~L~Vad~~~gl~~~d~~~~~~---~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~  215 (406)
                      .  .+.+|+++. ..+.+++....+.   +.+....++....+-..|++++||+||++..+.......+        +. 
T Consensus       139 ~--~~~~~~~n~-~~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~~~~~~aq--------~~-  206 (399)
T COG2133         139 P--GGGLYVANR-VAIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDGKLYVTTGSNGDPALAQ--------DN-  206 (399)
T ss_pred             e--cCCceEEEE-EEEEEcCCCccccccccEEeecCCCCCCcCcccEEECCCCcEEEEeCCCCCccccc--------Cc-
Confidence            6  567888875 3677777221222   1222222332356778899999999999986532111110        00 


Q ss_pred             cCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeE
Q 015463          216 SLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRL  274 (406)
Q Consensus       216 e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i  274 (406)
                       ....+++...... .++..|+.+...+++..++.+++|+++.|....||++|.+...+
T Consensus       207 -~~~~Gk~~r~~~a-~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~  263 (399)
T COG2133         207 -VSLAGKVLRIDRA-GIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGPDAL  263 (399)
T ss_pred             -cccccceeeeccC-cccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCCCcc
Confidence             0111222212223 36677777777788889999999999999867799998766444

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.58  E-value=2.6e-05  Score=78.75  Aligned_cols=194  Identities=18%  Similarity=0.214  Sum_probs=128.6

Q ss_pred             eeccCc--ccCcceEEEcCCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEE
Q 015463           62 IKFLNQ--IQGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRF  138 (406)
Q Consensus        62 ~~~~~~--~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~  138 (406)
                      .++..|  +..-.++++.|||..+-||..||+|..||.. ++-.++..                    +|+ ....++.|
T Consensus       342 YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt--------------------eHt-s~Vt~v~f  400 (893)
T KOG0291|consen  342 YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT--------------------EHT-SGVTAVQF  400 (893)
T ss_pred             eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec--------------------cCC-CceEEEEE
Confidence            444444  5556789999999999999999999999987 43333221                    222 23568889


Q ss_pred             eCCCCcEEEEeCC-CcEEEEeCCCC-eEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccccccccccc
Q 015463          139 DKKTGDLYIADAY-FGLMKVGPEGG-LATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSS  216 (406)
Q Consensus       139 d~~~g~L~Vad~~-~gl~~~d~~~~-~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e  216 (406)
                      .. .|+..++.+- +.+..+|.... .++.+..+    .....+++++|+.|.+.++.+-                +.+ 
T Consensus       401 ~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P----~p~QfscvavD~sGelV~AG~~----------------d~F-  458 (893)
T KOG0291|consen  401 TA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP----EPIQFSCVAVDPSGELVCAGAQ----------------DSF-  458 (893)
T ss_pred             Ee-cCCEEEEeecCCeEEeeeecccceeeeecCC----CceeeeEEEEcCCCCEEEeecc----------------ceE-
Confidence            88 7887777665 45777886533 23333222    2234678999999998887632                222 


Q ss_pred             CCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCc-ceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCC
Q 015463          217 LNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFP-NGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPG  295 (406)
Q Consensus       217 ~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~-ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g  295 (406)
                                    .++.++.+||+..-.+.+...| .+++++++++ ++++.++.+.|.++++-.. .++.|.+. ...
T Consensus       459 --------------~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s-~~~vEtl~-i~s  521 (893)
T KOG0291|consen  459 --------------EIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSS-SGTVETLE-IRS  521 (893)
T ss_pred             --------------EEEEEEeecCeeeehhcCCCCcceeeEEccccC-eEEeccccceEEEEEeecc-CceeeeEe-ecc
Confidence                          3899999999987777776666 5889999998 5577778788887776632 23333332 111


Q ss_pred             CCCceEECCCCC-EEEEEccC
Q 015463          296 YPDNVRTNEKGE-FWVAIHCR  315 (406)
Q Consensus       296 ~pd~i~~d~~G~-lwv~~~~~  315 (406)
                      -.-++.+.++|. +-|++..+
T Consensus       522 dvl~vsfrPdG~elaVaTldg  542 (893)
T KOG0291|consen  522 DVLAVSFRPDGKELAVATLDG  542 (893)
T ss_pred             ceeEEEEcCCCCeEEEEEecc
Confidence            123566777777 77777665

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.58  E-value=4.3e-05  Score=71.52  Aligned_cols=181  Identities=13%  Similarity=0.104  Sum_probs=111.2

Q ss_pred             cCcceEEEcCCCCeeEEEe-cCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEE
Q 015463           69 QGPESMAFDPLGRGPYTGV-ADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~-~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~V  147 (406)
                      ..|+.++++++|+.+|+.. .++.|..|+......+....                     ....|.++++++ +|.+++
T Consensus        73 ~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~---------------------~~~~~~~~~~~~-dg~~l~  130 (300)
T TIGR03866        73 PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP---------------------VGVEPEGMAVSP-DGKIVV  130 (300)
T ss_pred             CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee---------------------CCCCcceEEECC-CCCEEE
Confidence            3578889999998777764 46888889876222221110                     013367899998 676655


Q ss_pred             EeCCC--cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEE-EEeCCCchhhhccccccccccccccCCCCCCCc
Q 015463          148 ADAYF--GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVY-FTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIK  224 (406)
Q Consensus       148 ad~~~--gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly-~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  224 (406)
                      .....  .+..+|.++++......  .   ...+..++++++|..+ ++...                            
T Consensus       131 ~~~~~~~~~~~~d~~~~~~~~~~~--~---~~~~~~~~~s~dg~~l~~~~~~----------------------------  177 (300)
T TIGR03866       131 NTSETTNMAHFIDTKTYEIVDNVL--V---DQRPRFAEFTADGKELWVSSEI----------------------------  177 (300)
T ss_pred             EEecCCCeEEEEeCCCCeEEEEEE--c---CCCccEEEECCCCCEEEEEcCC----------------------------
Confidence            44432  35667887665432111  1   1235678889999744 54321                            


Q ss_pred             ccCCCCeEEEEeCCCCeEEEecc--------cCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCC
Q 015463          225 ITKDTGRVLKYDPTTKQTTVLLR--------NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGY  296 (406)
Q Consensus       225 ~~~~~g~l~~~d~~t~~~~~~~~--------~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~  296 (406)
                          .|.+..||.++++......        ....+.++++++|++.+|++....+++..+++..   +.........+.
T Consensus       178 ----~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~  250 (300)
T TIGR03866       178 ----GGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT---YEVLDYLLVGQR  250 (300)
T ss_pred             ----CCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC---CcEEEEEEeCCC
Confidence                3678899998776432111        1123567899999999888766667899888653   221111122345


Q ss_pred             CCceEECCCCCEEEE
Q 015463          297 PDNVRTNEKGEFWVA  311 (406)
Q Consensus       297 pd~i~~d~~G~lwv~  311 (406)
                      +..++++++|...++
T Consensus       251 ~~~~~~~~~g~~l~~  265 (300)
T TIGR03866       251 VWQLAFTPDEKYLLT  265 (300)
T ss_pred             cceEEECCCCCEEEE
Confidence            778889999985443

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.56  E-value=2.1e-06  Score=87.04  Aligned_cols=186  Identities=18%  Similarity=0.179  Sum_probs=119.1

Q ss_pred             CcceEEEcC-CCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEE
Q 015463           70 GPESMAFDP-LGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (406)
Q Consensus        70 gpe~i~~d~-~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~  146 (406)
                      -|-+|.+|- +..++|+......|.+-..+  +-+.+..                      ...+.|-||++|....++|
T Consensus      1026 IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n----------------------~~L~SPEGiAVDh~~Rn~y 1083 (1289)
T KOG1214|consen 1026 IIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVN----------------------SGLISPEGIAVDHIRRNMY 1083 (1289)
T ss_pred             eeeeeecccccceEEEeecCCCccccccccCCCCceeec----------------------ccCCCccceeeeeccceee
Confidence            455666773 44456777766666554433  2222211                      1246799999998677899


Q ss_pred             EEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcC-CCCEEEEeCCCchhhhccccccccccccccCCCCCCCc
Q 015463          147 IADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIK  224 (406)
Q Consensus       147 Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  224 (406)
                      -+|+. ..|-.-..++.+.+.|...    -+..|.+|++|+ .|+||++|+..                           
T Consensus      1084 wtDS~lD~IevA~LdG~~rkvLf~t----dLVNPR~iv~D~~rgnLYwtDWnR--------------------------- 1132 (1289)
T KOG1214|consen 1084 WTDSVLDKIEVALLDGSERKVLFYT----DLVNPRAIVVDPIRGNLYWTDWNR--------------------------- 1132 (1289)
T ss_pred             eeccccchhheeecCCceeeEEEee----cccCcceEEeecccCceeeccccc---------------------------
Confidence            88876 3333333345554554432    245688999998 77999999741                           


Q ss_pred             ccCCCCeEEEEeCCCCeEEEe-cccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEEC
Q 015463          225 ITKDTGRVLKYDPTTKQTTVL-LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTN  303 (406)
Q Consensus       225 ~~~~~g~l~~~d~~t~~~~~~-~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d  303 (406)
                         .+-.|-+.+.+...-+.+ .+.+.-|||+.+.|-.+.|.|++.+.+|+--...+|  +++..++..| .+|-+|.-+
T Consensus      1133 ---enPkIets~mDG~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g--~gRR~i~~~L-qYPF~itsy 1206 (1289)
T KOG1214|consen 1133 ---ENPKIETSSMDGENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDG--TGRRVIQNNL-QYPFSITSY 1206 (1289)
T ss_pred             ---cCCcceeeccCCccceEEeecccCCCCCceeCcccceeeEEecCCcceeEecCCC--Ccchhhhhcc-cCceeeeec
Confidence               122344444443333333 467888999999999999999999999998888765  3444444443 468888877


Q ss_pred             CCCCEEEEEccC
Q 015463          304 EKGEFWVAIHCR  315 (406)
Q Consensus       304 ~~G~lwv~~~~~  315 (406)
                      .+. ||-+.+..
T Consensus      1207 ~~~-fY~TDWk~ 1217 (1289)
T KOG1214|consen 1207 ADH-FYHTDWKR 1217 (1289)
T ss_pred             ccc-ceeecccc
Confidence            665 77766543

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.47  E-value=0.00021  Score=70.25  Aligned_cols=191  Identities=15%  Similarity=0.187  Sum_probs=126.4

Q ss_pred             CcceEEEcCCCCeeEEEecC-CEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463           70 GPESMAFDPLGRGPYTGVAD-GRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~~-g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va  148 (406)
                      .|-.++.+++|..+|+.... ..+..++.. ...+...                   .......|.++++.+...++|+.
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~-------------------~~~g~~~p~~i~v~~~~~~vyv~   91 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQS-------------------LSVGGVYPAGVAVNPAGNKVYVT   91 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccc-cceeeee-------------------ccCCCccccceeeCCCCCeEEEe
Confidence            88999999999656665433 334444432 1111100                   00112568899998855569999


Q ss_pred             eCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCC-CEEEEeCCCchhhhccccccccccccccCCCCCCCccc
Q 015463          149 DAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKIT  226 (406)
Q Consensus       149 d~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~  226 (406)
                      +.. +.+..+|..+.+.....  .-|   ..|.+++++++| .+|+++...                             
T Consensus        92 ~~~~~~v~vid~~~~~~~~~~--~vG---~~P~~~~~~~~~~~vYV~n~~~-----------------------------  137 (381)
T COG3391          92 TGDSNTVSVIDTATNTVLGSI--PVG---LGPVGLAVDPDGKYVYVANAGN-----------------------------  137 (381)
T ss_pred             cCCCCeEEEEcCcccceeeEe--eec---cCCceEEECCCCCEEEEEeccc-----------------------------
Confidence            866 67888886554332211  112   268899999988 899998631                             


Q ss_pred             CCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcc--eeeeecCCCCCCceEECC
Q 015463          227 KDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGN--LEAFAILPGYPDNVRTNE  304 (406)
Q Consensus       227 ~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~--~~~~~~l~g~pd~i~~d~  304 (406)
                       ..+.+..+|..+++.......-..|.+++++++++.+|+++...++|..++..+.....  ..........|..+++++
T Consensus       138 -~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~  216 (381)
T COG3391         138 -GNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDP  216 (381)
T ss_pred             -CCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECC
Confidence             24679999999887665543333678999999999999999888999999966432211  000122334588999999


Q ss_pred             CCC-EEEEEccC
Q 015463          305 KGE-FWVAIHCR  315 (406)
Q Consensus       305 ~G~-lwv~~~~~  315 (406)
                      +|. +|++....
T Consensus       217 ~g~~~yV~~~~~  228 (381)
T COG3391         217 DGNRVYVANDGS  228 (381)
T ss_pred             CCCEEEEEeccC
Confidence            999 88887654

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=98.40  E-value=4e-05  Score=68.09  Aligned_cols=190  Identities=18%  Similarity=0.201  Sum_probs=117.5

Q ss_pred             cCcccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc
Q 015463           65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (406)
Q Consensus        65 ~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~  144 (406)
                      ++.-..--++.|..+|+.+|+|+.||.+..||....            .|+-        ...+. .....+...+++++
T Consensus        80 e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~------------~~qR--------~~~~~-spVn~vvlhpnQte  138 (311)
T KOG0315|consen   80 EGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL------------SCQR--------NYQHN-SPVNTVVLHPNQTE  138 (311)
T ss_pred             eccCCceEEEEEeecCeEEEecCCCceEEEEeccCc------------ccch--------hccCC-CCcceEEecCCcce
Confidence            333344567778889999999999999999986510            0110        01111 22356788887889


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCc
Q 015463          145 LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIK  224 (406)
Q Consensus       145 L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  224 (406)
                      |+++|..+.|..+|.............+   ..++..+.+++||.+.++..+                            
T Consensus       139 Lis~dqsg~irvWDl~~~~c~~~liPe~---~~~i~sl~v~~dgsml~a~nn----------------------------  187 (311)
T KOG0315|consen  139 LISGDQSGNIRVWDLGENSCTHELIPED---DTSIQSLTVMPDGSMLAAANN----------------------------  187 (311)
T ss_pred             EEeecCCCcEEEEEccCCccccccCCCC---CcceeeEEEcCCCcEEEEecC----------------------------
Confidence            9999988889999988765444332222   246788999999988887532                            


Q ss_pred             ccCCCCeEEEEeCCCCeEEEec---ccCCCcc----eEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCC-
Q 015463          225 ITKDTGRVLKYDPTTKQTTVLL---RNLQFPN----GLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGY-  296 (406)
Q Consensus       225 ~~~~~g~l~~~d~~t~~~~~~~---~~~~~~n----gi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~-  296 (406)
                          .|+.|+++.-+++.....   ..++.-+    -..+|||++.|--+ .....++.++.++- . ..|..  +.|. 
T Consensus       188 ----kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~-ssdktv~iwn~~~~-~-kle~~--l~gh~  258 (311)
T KOG0315|consen  188 ----KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATC-SSDKTVKIWNTDDF-F-KLELV--LTGHQ  258 (311)
T ss_pred             ----CccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEee-cCCceEEEEecCCc-e-eeEEE--eecCC
Confidence                477888887665443221   1222222    24589999876444 44567777776643 0 11111  2221 


Q ss_pred             --CCceEECCCCCEEEEEccC
Q 015463          297 --PDNVRTNEKGEFWVAIHCR  315 (406)
Q Consensus       297 --pd~i~~d~~G~lwv~~~~~  315 (406)
                        --+-+++.||.+.|+..+.
T Consensus       259 rWvWdc~FS~dg~YlvTassd  279 (311)
T KOG0315|consen  259 RWVWDCAFSADGEYLVTASSD  279 (311)
T ss_pred             ceEEeeeeccCccEEEecCCC
Confidence              2234567788777665443

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.39  E-value=6.6e-05  Score=68.75  Aligned_cols=195  Identities=11%  Similarity=0.091  Sum_probs=103.1

Q ss_pred             cCcccCcceEEEcCCCCeeEEE-ecCCEEEEEeCC-ce-eEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC
Q 015463           65 LNQIQGPESMAFDPLGRGPYTG-VADGRILFWDGL-KW-TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK  141 (406)
Q Consensus        65 ~~~~~gpe~i~~d~~g~~ly~g-~~~g~I~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~  141 (406)
                      .+-...+.+|+++++.+.||+- -..+.|+.++.+ .+ ..+...                      ..+.+-||++-. 
T Consensus        18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~----------------------g~~D~EgI~y~g-   74 (248)
T PF06977_consen   18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLD----------------------GFGDYEGITYLG-   74 (248)
T ss_dssp             TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-S----------------------S-SSEEEEEE-S-
T ss_pred             CCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCC----------------------CCCCceeEEEEC-
Confidence            3334458999999986657764 456889999876 32 222111                      135688999886 


Q ss_pred             CCcEEEEeCC-CcEEEEeC--CCCeE-----EEcccccCCcccccccceEEcCC-CCEEEEeCCCchhhhcccccccccc
Q 015463          142 TGDLYIADAY-FGLMKVGP--EGGLA-----TSLATEAEGVPLRFTNDLDIDDE-GNVYFTDSSTNYQRRQMQKENIPLQ  212 (406)
Q Consensus       142 ~g~L~Vad~~-~gl~~~d~--~~~~~-----~~l~~~~~~~~~~~~~~l~~d~d-G~ly~t~~~~~~~~~~~~~~~~~~~  212 (406)
                      ++.+.+++.. +.|+.++.  .+..+     +.+.............+|+.|+. +++|++.-                 
T Consensus        75 ~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE-----------------  137 (248)
T PF06977_consen   75 NGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE-----------------  137 (248)
T ss_dssp             TTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE-----------------
T ss_pred             CCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC-----------------
Confidence            7777777754 56777766  22221     11211122222335778999986 46777641                 


Q ss_pred             ccccCCCCCCCcccCCCCeEEEEeC--CCCeEEEec--------ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCC
Q 015463          213 LCSSLNDPSPIKITKDTGRVLKYDP--TTKQTTVLL--------RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE  282 (406)
Q Consensus       213 ~~~e~~~~~~~~~~~~~g~l~~~d~--~t~~~~~~~--------~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~  282 (406)
                                    ....+|+.++.  .........        .....+.++++.|....+|+-.....+|..++.+|.
T Consensus       138 --------------~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~  203 (248)
T PF06977_consen  138 --------------RKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGR  203 (248)
T ss_dssp             --------------SSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--
T ss_pred             --------------CCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCC
Confidence                          11234666664  222222111        123456899999988888888888889999986653


Q ss_pred             CCcceeeeecCCC------CCCceEECCCCCEEEEEc
Q 015463          283 KAGNLEAFAILPG------YPDNVRTNEKGEFWVAIH  313 (406)
Q Consensus       283 ~~~~~~~~~~l~g------~pd~i~~d~~G~lwv~~~  313 (406)
                      -.+....-....|      .|.||++|++|+|||..-
T Consensus       204 ~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE  240 (248)
T PF06977_consen  204 VVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE  240 (248)
T ss_dssp             EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEET
T ss_pred             EEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcC
Confidence            1111111111111      378999999999999874

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.37  E-value=0.00011  Score=71.84  Aligned_cols=157  Identities=17%  Similarity=0.229  Sum_probs=93.7

Q ss_pred             cceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-EEEEe
Q 015463           71 PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYIAD  149 (406)
Q Consensus        71 pe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-L~Vad  149 (406)
                      +-++++.+||+.+|+...+|.|.++|....+.+...                     ..+..|.|+++++ +|+ ++++.
T Consensus        39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i---------------------~~G~~~~~i~~s~-DG~~~~v~n   96 (369)
T PF02239_consen   39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATI---------------------KVGGNPRGIAVSP-DGKYVYVAN   96 (369)
T ss_dssp             EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEE---------------------E-SSEEEEEEE---TTTEEEEEE
T ss_pred             eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEE---------------------ecCCCcceEEEcC-CCCEEEEEe
Confidence            455778899999999999999999998732222211                     1256689999998 555 67776


Q ss_pred             CC-CcEEEEeCCCCeEE-Ecccc-c-CCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcc
Q 015463          150 AY-FGLMKVGPEGGLAT-SLATE-A-EGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKI  225 (406)
Q Consensus       150 ~~-~gl~~~d~~~~~~~-~l~~~-~-~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  225 (406)
                      .. +.+..+|.++.+.. .+... . ...+-..+..+...+....|+.+                               
T Consensus        97 ~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~-------------------------------  145 (369)
T PF02239_consen   97 YEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVN-------------------------------  145 (369)
T ss_dssp             EETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEE-------------------------------
T ss_pred             cCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEE-------------------------------
Confidence            54 67899998776432 22211 0 11122234456666666656554                               


Q ss_pred             cCCCCeEEEEeCCCCe--EEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          226 TKDTGRVLKYDPTTKQ--TTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       226 ~~~~g~l~~~d~~t~~--~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                      ....+.++.+|.++.+  .....+.-.++.+..+++|+++++++....+.|-.++.+
T Consensus       146 lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~  202 (369)
T PF02239_consen  146 LKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTK  202 (369)
T ss_dssp             ETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETT
T ss_pred             EccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeec
Confidence            2335788888865432  222333446788899999999999987777788888754

...

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=98.36  E-value=0.00072  Score=66.08  Aligned_cols=201  Identities=15%  Similarity=0.138  Sum_probs=128.5

Q ss_pred             ceeccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeC
Q 015463           61 EIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK  140 (406)
Q Consensus        61 ~~~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~  140 (406)
                      ..+..|....-.++++.++|..+|+++++|.|..|+...-+.....                   -+...+...+|+...
T Consensus       313 ~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~-------------------g~~h~nqI~~~~~~~  373 (603)
T KOG0318|consen  313 LKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLA-------------------GKGHTNQIKGMAASE  373 (603)
T ss_pred             hheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccc-------------------cccccceEEEEeecC
Confidence            3445566677789999999999999999999999987511100000                   011134466788775


Q ss_pred             CCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCC
Q 015463          141 KTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDP  220 (406)
Q Consensus       141 ~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~  220 (406)
                       .+.|+.......|.+++...+....-...   .-...|-++++.++|.+-+-...                        
T Consensus       374 -~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~---~lg~QP~~lav~~d~~~avv~~~------------------------  425 (603)
T KOG0318|consen  374 -SGELFTIGWDDTLRVISLKDNGYTKSEVV---KLGSQPKGLAVLSDGGTAVVACI------------------------  425 (603)
T ss_pred             -CCcEEEEecCCeEEEEecccCccccccee---ecCCCceeEEEcCCCCEEEEEec------------------------
Confidence             68899888888888887754433211000   11234668999988754443321                        


Q ss_pred             CCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCce
Q 015463          221 SPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNV  300 (406)
Q Consensus       221 ~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i  300 (406)
                               ..|..+.-.++-.+.  .-...+.++|++||++.+.|-.. .+.|+.|.+.|..........+..+-+..+
T Consensus       426 ---------~~iv~l~~~~~~~~~--~~~y~~s~vAv~~~~~~vaVGG~-Dgkvhvysl~g~~l~ee~~~~~h~a~iT~v  493 (603)
T KOG0318|consen  426 ---------SDIVLLQDQTKVSSI--PIGYESSAVAVSPDGSEVAVGGQ-DGKVHVYSLSGDELKEEAKLLEHRAAITDV  493 (603)
T ss_pred             ---------CcEEEEecCCcceee--ccccccceEEEcCCCCEEEEecc-cceEEEEEecCCcccceeeeecccCCceEE
Confidence                     235555433332221  12245678999999998877654 467999999975443222333456778889


Q ss_pred             EECCCCCEEEEEccCCcchh
Q 015463          301 RTNEKGEFWVAIHCRRSLYS  320 (406)
Q Consensus       301 ~~d~~G~lwv~~~~~~~~~~  320 (406)
                      +.++||.+.++....|.+..
T Consensus       494 aySpd~~yla~~Da~rkvv~  513 (603)
T KOG0318|consen  494 AYSPDGAYLAAGDASRKVVL  513 (603)
T ss_pred             EECCCCcEEEEeccCCcEEE
Confidence            99999999998876655443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.30  E-value=0.00041  Score=69.47  Aligned_cols=175  Identities=15%  Similarity=0.086  Sum_probs=99.6

Q ss_pred             ceEEEcCCCCeeEEEec---CCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC-cE
Q 015463           72 ESMAFDPLGRGPYTGVA---DGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG-DL  145 (406)
Q Consensus        72 e~i~~d~~g~~ly~g~~---~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g-~L  145 (406)
                      .+++++++|+.++....   ...|++++..  ..+.+...                       .+.....++++ +| .|
T Consensus       207 ~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~-----------------------~g~~~~~~~Sp-DG~~l  262 (433)
T PRK04922        207 LSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASF-----------------------RGINGAPSFSP-DGRRL  262 (433)
T ss_pred             ccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccC-----------------------CCCccCceECC-CCCEE
Confidence            35578889885554432   2358888765  22222110                       01112457888 55 45


Q ss_pred             EEEeCCC---cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCCCC
Q 015463          146 YIADAYF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPS  221 (406)
Q Consensus       146 ~Vad~~~---gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~  221 (406)
                      +++....   .|+.+|.++++.+.+....     .......+.+||+ |+++...                         
T Consensus       263 ~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~-----~~~~~~~~spDG~~l~f~sd~-------------------------  312 (433)
T PRK04922        263 ALTLSRDGNPEIYVMDLGSRQLTRLTNHF-----GIDTEPTWAPDGKSIYFTSDR-------------------------  312 (433)
T ss_pred             EEEEeCCCCceEEEEECCCCCeEECccCC-----CCccceEECCCCCEEEEEECC-------------------------
Confidence            5443322   4999999988876654321     1123567888986 5555321                         


Q ss_pred             CCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCC--CeEEEEEeeCCCCcceeeeecCCCCCCc
Q 015463          222 PIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGNLEAFAILPGYPDN  299 (406)
Q Consensus       222 ~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~--~~i~~~~~~g~~~~~~~~~~~l~g~pd~  299 (406)
                           .+...|+.+|.++++.+.+..........+++||++.++++....  .+|+.+++.+.   ....+... +....
T Consensus       313 -----~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g---~~~~Lt~~-~~~~~  383 (433)
T PRK04922        313 -----GGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG---SVRTLTPG-SLDES  383 (433)
T ss_pred             -----CCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCC---CeEECCCC-CCCCC
Confidence                 112359999988887766543223344688999999988875432  36888887542   22233221 12234


Q ss_pred             eEECCCCCEE
Q 015463          300 VRTNEKGEFW  309 (406)
Q Consensus       300 i~~d~~G~lw  309 (406)
                      ...++||+..
T Consensus       384 p~~spdG~~i  393 (433)
T PRK04922        384 PSFAPNGSMV  393 (433)
T ss_pred             ceECCCCCEE
Confidence            5678888843

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.28  E-value=0.0014  Score=59.54  Aligned_cols=182  Identities=15%  Similarity=0.111  Sum_probs=111.7

Q ss_pred             ceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeC-
Q 015463           72 ESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA-  150 (406)
Q Consensus        72 e~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~-  150 (406)
                      .++.+.++++.++++..+|.|..|+..........                    ......+..+.+.+ +++++++.. 
T Consensus        55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~--------------------~~~~~~i~~~~~~~-~~~~~~~~~~  113 (289)
T cd00200          55 RDVAASADGTYLASGSSDKTIRLWDLETGECVRTL--------------------TGHTSYVSSVAFSP-DGRILSSSSR  113 (289)
T ss_pred             eEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEE--------------------eccCCcEEEEEEcC-CCCEEEEecC
Confidence            47788888877899999999999987521111000                    01123467788887 567777666 


Q ss_pred             CCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCC
Q 015463          151 YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTG  230 (406)
Q Consensus       151 ~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g  230 (406)
                      .+.+..++..+++.......    ....+..+.+++++.++++...                                +|
T Consensus       114 ~~~i~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~--------------------------------~~  157 (289)
T cd00200         114 DKTIKVWDVETGKCLTTLRG----HTDWVNSVAFSPDGTFVASSSQ--------------------------------DG  157 (289)
T ss_pred             CCeEEEEECCCcEEEEEecc----CCCcEEEEEEcCcCCEEEEEcC--------------------------------CC
Confidence            56788999875543322111    1124678888888877776531                                36


Q ss_pred             eEEEEeCCCCeEEEeccc-CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCCCCEE
Q 015463          231 RVLKYDPTTKQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFW  309 (406)
Q Consensus       231 ~l~~~d~~t~~~~~~~~~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~lw  309 (406)
                      .+..||..+++....... ......++++++++.++++.. .+.+..|++...+  ....+....+....+..++++.++
T Consensus       158 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~  234 (289)
T cd00200         158 TIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTGK--CLGTLRGHENGVNSVAFSPDGYLL  234 (289)
T ss_pred             cEEEEEccccccceeEecCccccceEEECCCcCEEEEecC-CCcEEEEECCCCc--eecchhhcCCceEEEEEcCCCcEE
Confidence            788888876554333222 224567899999987777654 6788888875311  111111112234556777777777


Q ss_pred             EEEc
Q 015463          310 VAIH  313 (406)
Q Consensus       310 v~~~  313 (406)
                      ++..
T Consensus       235 ~~~~  238 (289)
T cd00200         235 ASGS  238 (289)
T ss_pred             EEEc
Confidence            7664

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.26  E-value=0.0026  Score=57.78  Aligned_cols=184  Identities=19%  Similarity=0.223  Sum_probs=109.7

Q ss_pred             cCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC-cEEE
Q 015463           69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG-DLYI  147 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g-~L~V  147 (406)
                      ....++.+.++++.++++..+|.|..|+...........                    ........+.+.+ ++ .+++
T Consensus        10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~--------------------~~~~~i~~~~~~~-~~~~l~~   68 (289)
T cd00200          10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK--------------------GHTGPVRDVAASA-DGTYLAS   68 (289)
T ss_pred             CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEe--------------------cCCcceeEEEECC-CCCEEEE
Confidence            345688899998888889889999988765111110000                    0012234778887 45 5666


Q ss_pred             EeCCCcEEEEeCCCCeE-EEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCccc
Q 015463          148 ADAYFGLMKVGPEGGLA-TSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKIT  226 (406)
Q Consensus       148 ad~~~gl~~~d~~~~~~-~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~  226 (406)
                      +...+.+..++.++++. ..+..     ....+..+...+++.++++...                              
T Consensus        69 ~~~~~~i~i~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~------------------------------  113 (289)
T cd00200          69 GSSDKTIRLWDLETGECVRTLTG-----HTSYVSSVAFSPDGRILSSSSR------------------------------  113 (289)
T ss_pred             EcCCCeEEEEEcCcccceEEEec-----cCCcEEEEEEcCCCCEEEEecC------------------------------
Confidence            66667788888876432 22211     1124667888888877777642                              


Q ss_pred             CCCCeEEEEeCCCCeEEEeccc-CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCC
Q 015463          227 KDTGRVLKYDPTTKQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEK  305 (406)
Q Consensus       227 ~~~g~l~~~d~~t~~~~~~~~~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~  305 (406)
                        .|.+..||..+++....... ......+++++++..++.. ...+.|..|++...+.  ...+....+....+..+++
T Consensus       114 --~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~~~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~  188 (289)
T cd00200         114 --DKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASS-SQDGTIKLWDLRTGKC--VATLTGHTGEVNSVAFSPD  188 (289)
T ss_pred             --CCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEE-cCCCcEEEEEcccccc--ceeEecCccccceEEECCC
Confidence              37799999886654443332 2345678899987765544 3457888888753211  1122212223456778888


Q ss_pred             CC-EEEEEc
Q 015463          306 GE-FWVAIH  313 (406)
Q Consensus       306 G~-lwv~~~  313 (406)
                      |+ ++++..
T Consensus       189 ~~~l~~~~~  197 (289)
T cd00200         189 GEKLLSSSS  197 (289)
T ss_pred             cCEEEEecC
Confidence            85 555544

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.25  E-value=0.00074  Score=67.90  Aligned_cols=173  Identities=13%  Similarity=0.123  Sum_probs=97.7

Q ss_pred             eEEEcCCCCee-EEEecC--CEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEE
Q 015463           73 SMAFDPLGRGP-YTGVAD--GRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (406)
Q Consensus        73 ~i~~d~~g~~l-y~g~~~--g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~V  147 (406)
                      +..+++||+.+ |+...+  ..|+.++..  +.+.+...                       .+.....++++++..|++
T Consensus       222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~-----------------------~g~~~~~~wSPDG~~La~  278 (448)
T PRK04792        222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF-----------------------PGINGAPRFSPDGKKLAL  278 (448)
T ss_pred             CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC-----------------------CCCcCCeeECCCCCEEEE
Confidence            56788898854 444333  357888765  22222110                       011123577883334655


Q ss_pred             EeCCC---cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCCCCCC
Q 015463          148 ADAYF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPI  223 (406)
Q Consensus       148 ad~~~---gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  223 (406)
                      +....   .|+.+|.++++.+.+....     .......+.+||. |+++...                           
T Consensus       279 ~~~~~g~~~Iy~~dl~tg~~~~lt~~~-----~~~~~p~wSpDG~~I~f~s~~---------------------------  326 (448)
T PRK04792        279 VLSKDGQPEIYVVDIATKALTRITRHR-----AIDTEPSWHPDGKSLIFTSER---------------------------  326 (448)
T ss_pred             EEeCCCCeEEEEEECCCCCeEECccCC-----CCccceEECCCCCEEEEEECC---------------------------
Confidence            43332   4999999988877654321     1234457788885 5555321                           


Q ss_pred             cccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCC--CeEEEEEeeCCCCcceeeeecCCCCCCceE
Q 015463          224 KITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGNLEAFAILPGYPDNVR  301 (406)
Q Consensus       224 ~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~--~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~  301 (406)
                         .+...|+++|.++++.+.+........+.+++||++.++++....  .+|+++++++.   ....+.. ........
T Consensus       327 ---~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g---~~~~lt~-~~~d~~ps  399 (448)
T PRK04792        327 ---GGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG---AMQVLTS-TRLDESPS  399 (448)
T ss_pred             ---CCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCC---CeEEccC-CCCCCCce
Confidence               112469999998888776642222334578999999998876533  36777887643   2222221 11112335


Q ss_pred             ECCCCC
Q 015463          302 TNEKGE  307 (406)
Q Consensus       302 ~d~~G~  307 (406)
                      .+++|+
T Consensus       400 ~spdG~  405 (448)
T PRK04792        400 VAPNGT  405 (448)
T ss_pred             ECCCCC
Confidence            677777

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=98.19  E-value=0.00038  Score=74.36  Aligned_cols=188  Identities=18%  Similarity=0.266  Sum_probs=119.8

Q ss_pred             cccCcceEEEcCCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcE
Q 015463           67 QIQGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL  145 (406)
Q Consensus        67 ~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L  145 (406)
                      .+..|-.+|..+||. +|+|.++- |.|+-++ .+..+.......                   ...-+-|+++|-+|.|
T Consensus       363 ~L~aPvala~a~DGS-l~VGDfNy-IRRI~~dg~v~tIl~L~~t~-------------------~sh~Yy~AvsPvdgtl  421 (1899)
T KOG4659|consen  363 SLFAPVALAYAPDGS-LIVGDFNY-IRRISQDGQVSTILTLGLTD-------------------TSHSYYIAVSPVDGTL  421 (1899)
T ss_pred             eeeceeeEEEcCCCc-EEEccchh-eeeecCCCceEEEEEecCCC-------------------ccceeEEEecCcCceE
Confidence            467899999999999 99998875 8888877 666655432110                   1113568899989999


Q ss_pred             EEEeCC-CcEEEEeCCCC-----eEEEcccc----------------cCCcccccccceEEcCCCCEEEEeCCCchhhhc
Q 015463          146 YIADAY-FGLMKVGPEGG-----LATSLATE----------------AEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQ  203 (406)
Q Consensus       146 ~Vad~~-~gl~~~d~~~~-----~~~~l~~~----------------~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~  203 (406)
                      ||.|.. +.|+|+.--..     ..+.++..                ....++.+|.+|++|++|+|||+|..       
T Consensus       422 yvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~lYfaD~t-------  494 (1899)
T KOG4659|consen  422 YVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNLYFADGT-------  494 (1899)
T ss_pred             EecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCcEEEeccc-------
Confidence            999986 67888742111     12222211                11246789999999999999999964       


Q ss_pred             cccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec--------------------ccCCCcceEEEecCCCE
Q 015463          204 MQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL--------------------RNLQFPNGLSLSKDKSF  263 (406)
Q Consensus       204 ~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~--------------------~~~~~~ngi~l~~d~~~  263 (406)
                                                 ++-.+|.. |.+..+.                    -.+..|..+|++|=.+.
T Consensus       495 ---------------------------~IR~iD~~-giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdns  546 (1899)
T KOG4659|consen  495 ---------------------------RIRVIDTT-GIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNS  546 (1899)
T ss_pred             ---------------------------EEEEeccC-ceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCe
Confidence                                       12222221 2222211                    12456788999996667


Q ss_pred             EEEEeCCCCeEEEEEeeCCCCcceeeee------cCCC---------------CCCceEECCCCCEEEEEccCC
Q 015463          264 FVFCEGSVGRLHKYWLIGEKAGNLEAFA------ILPG---------------YPDNVRTNEKGEFWVAIHCRR  316 (406)
Q Consensus       264 l~v~~t~~~~i~~~~~~g~~~~~~~~~~------~l~g---------------~pd~i~~d~~G~lwv~~~~~~  316 (406)
                      |+|.++  +-|++++..+.    ..+..      ++++               .+..|++..+|.|||+-..++
T Consensus       547 l~Vld~--nvvlrit~~~r----V~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~r  614 (1899)
T KOG4659|consen  547 LLVLDT--NVVLRITVVHR----VRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDGR  614 (1899)
T ss_pred             EEEeec--ceEEEEccCcc----EEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccch
Confidence            889875  56777665431    11111      1111               356789999999999977654

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=0.0056  Score=56.37  Aligned_cols=186  Identities=12%  Similarity=0.088  Sum_probs=109.1

Q ss_pred             cCcceEEEcCCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcE
Q 015463           69 QGPESMAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL  145 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L  145 (406)
                      .-++++.++++|..+.+.+.+..|..++..   ....+....                      .| +.-+.|-....++
T Consensus        15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skk----------------------yG-~~~~~Fth~~~~~   71 (311)
T KOG1446|consen   15 GKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKK----------------------YG-VDLACFTHHSNTV   71 (311)
T ss_pred             CceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeeccc----------------------cc-ccEEEEecCCceE
Confidence            457899999999988888888888888865   222221110                      01 2223333324444


Q ss_pred             EEEeC--CCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCC
Q 015463          146 YIADA--YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPI  223 (406)
Q Consensus       146 ~Vad~--~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  223 (406)
                      .-+..  ...|..++..+.+..++-   .|- -..+++|.+.|-+..+++.+-                           
T Consensus        72 i~sStk~d~tIryLsl~dNkylRYF---~GH-~~~V~sL~~sP~~d~FlS~S~---------------------------  120 (311)
T KOG1446|consen   72 IHSSTKEDDTIRYLSLHDNKYLRYF---PGH-KKRVNSLSVSPKDDTFLSSSL---------------------------  120 (311)
T ss_pred             EEccCCCCCceEEEEeecCceEEEc---CCC-CceEEEEEecCCCCeEEeccc---------------------------
Confidence            44443  235666666555543332   221 235889999998888888653                           


Q ss_pred             cccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee-cCCCC--CCce
Q 015463          224 KITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPGY--PDNV  300 (406)
Q Consensus       224 ~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~-~l~g~--pd~i  300 (406)
                           +..+..+|....+...++.. ..+.-.|++|+|- ++.+...+..|..|++.--..|..+.|. ..+-.  =.++
T Consensus       121 -----D~tvrLWDlR~~~cqg~l~~-~~~pi~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l  193 (311)
T KOG1446|consen  121 -----DKTVRLWDLRVKKCQGLLNL-SGRPIAAFDPEGL-IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDL  193 (311)
T ss_pred             -----CCeEEeeEecCCCCceEEec-CCCcceeECCCCc-EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeee
Confidence                 34577777775555444432 3344578888774 4444444558999998743344444443 11111  1357


Q ss_pred             EECCCCC-EEEEEccC
Q 015463          301 RTNEKGE-FWVAIHCR  315 (406)
Q Consensus       301 ~~d~~G~-lwv~~~~~  315 (406)
                      .++++|. +.+++..+
T Consensus       194 ~FS~dGK~iLlsT~~s  209 (311)
T KOG1446|consen  194 EFSPDGKSILLSTNAS  209 (311)
T ss_pred             EEcCCCCEEEEEeCCC
Confidence            8899998 66777654

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.13  E-value=0.00027  Score=67.98  Aligned_cols=103  Identities=13%  Similarity=0.106  Sum_probs=71.3

Q ss_pred             CeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeC---------CCCeEEEEEeeCCCCcceeeeecCCC-----
Q 015463          230 GRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEG---------SVGRLHKYWLIGEKAGNLEAFAILPG-----  295 (406)
Q Consensus       230 g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t---------~~~~i~~~~~~g~~~~~~~~~~~l~g-----  295 (406)
                      |+++.+|.+++++.-....-..|+++ +|+|++.+|++++         ....|..++....+.-. ++  .++.     
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~-~i--~~p~~p~~~  102 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIA-DI--ELPEGPRFL  102 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEe-EE--ccCCCchhh
Confidence            78999999998876655556788997 9999999999999         67788888876321111 11  1222     


Q ss_pred             ---CCCceEECCCCC-EEEEEccC-CcchhhhhhcChhhhhhhhccCccc
Q 015463          296 ---YPDNVRTNEKGE-FWVAIHCR-RSLYSHLMALYPKIRHFLLKLPISA  340 (406)
Q Consensus       296 ---~pd~i~~d~~G~-lwv~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~  340 (406)
                         .|..+++++||+ +||+.... ..+-.    .+-..++++..++.+.
T Consensus       103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V----vD~~~~kvv~ei~vp~  148 (352)
T TIGR02658       103 VGTYPWMTSLTPDNKTLLFYQFSPSPAVGV----VDLEGKAFVRMMDVPD  148 (352)
T ss_pred             ccCccceEEECCCCCEEEEecCCCCCEEEE----EECCCCcEEEEEeCCC
Confidence               344889999998 88887542 22111    1445778888887765

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.13  E-value=0.0045  Score=61.15  Aligned_cols=146  Identities=13%  Similarity=0.130  Sum_probs=75.4

Q ss_pred             eeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcc-eEEEEeCCCCcEEEEeCCCcEEEEeC
Q 015463           82 GPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRP-LGLRFDKKTGDLYIADAYFGLMKVGP  159 (406)
Q Consensus        82 ~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~gi~~d~~~g~L~Vad~~~gl~~~d~  159 (406)
                      .+|+.+.+|.++.+|.+ .-.............           ......... -+++++  ++.+|+++..+.|+.+|.
T Consensus        71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~-----------~~~~~~~~~~~~~~v~--~~~v~v~~~~g~l~ald~  137 (394)
T PRK11138         71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGW-----------FSKNKSALLSGGVTVA--GGKVYIGSEKGQVYALNA  137 (394)
T ss_pred             EEEEECCCCeEEEEECCCCcEeeEEcCCCcccc-----------cccccccccccccEEE--CCEEEEEcCCCEEEEEEC
Confidence            49999999999999976 222222111100000           000000000 123454  689999987778999999


Q ss_pred             CCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCC
Q 015463          160 EGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTT  239 (406)
Q Consensus       160 ~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t  239 (406)
                      ++|+.. ......+....   ..++. +|.+|+.+..                                 |.|+.+|+++
T Consensus       138 ~tG~~~-W~~~~~~~~~s---sP~v~-~~~v~v~~~~---------------------------------g~l~ald~~t  179 (394)
T PRK11138        138 EDGEVA-WQTKVAGEALS---RPVVS-DGLVLVHTSN---------------------------------GMLQALNESD  179 (394)
T ss_pred             CCCCCc-ccccCCCceec---CCEEE-CCEEEEECCC---------------------------------CEEEEEEccC
Confidence            888632 11111121111   11232 6788887642                                 6799999998


Q ss_pred             CeEEEecc-cCC-----CcceEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463          240 KQTTVLLR-NLQ-----FPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  281 (406)
Q Consensus       240 ~~~~~~~~-~~~-----~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g  281 (406)
                      |+..--.. ...     .....++.  +..+++. +..++++.++.+.
T Consensus       180 G~~~W~~~~~~~~~~~~~~~sP~v~--~~~v~~~-~~~g~v~a~d~~~  224 (394)
T PRK11138        180 GAVKWTVNLDVPSLTLRGESAPATA--FGGAIVG-GDNGRVSAVLMEQ  224 (394)
T ss_pred             CCEeeeecCCCCcccccCCCCCEEE--CCEEEEE-cCCCEEEEEEccC
Confidence            87542211 100     00111222  2345554 3457787777653

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.12  E-value=0.0051  Score=60.31  Aligned_cols=142  Identities=16%  Similarity=0.152  Sum_probs=76.4

Q ss_pred             eEEEcCCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCC
Q 015463           73 SMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAY  151 (406)
Q Consensus        73 ~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~  151 (406)
                      +++++ ++ .+|+++.+|.++.+|.. +-.........                  .....   .+.+  ++.+|+++..
T Consensus        60 ~p~v~-~~-~v~v~~~~g~v~a~d~~tG~~~W~~~~~~------------------~~~~~---p~v~--~~~v~v~~~~  114 (377)
T TIGR03300        60 QPAVA-GG-KVYAADADGTVVALDAETGKRLWRVDLDE------------------RLSGG---VGAD--GGLVFVGTEK  114 (377)
T ss_pred             ceEEE-CC-EEEEECCCCeEEEEEccCCcEeeeecCCC------------------Ccccc---eEEc--CCEEEEEcCC
Confidence            44453 34 49999999999999965 22222111100                  01122   2344  6889999877


Q ss_pred             CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCe
Q 015463          152 FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGR  231 (406)
Q Consensus       152 ~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~  231 (406)
                      +.|+.+|.++|+..- .....+...   ...++ .++.+|+...                                 .|.
T Consensus       115 g~l~ald~~tG~~~W-~~~~~~~~~---~~p~v-~~~~v~v~~~---------------------------------~g~  156 (377)
T TIGR03300       115 GEVIALDAEDGKELW-RAKLSSEVL---SPPLV-ANGLVVVRTN---------------------------------DGR  156 (377)
T ss_pred             CEEEEEECCCCcEee-eeccCceee---cCCEE-ECCEEEEECC---------------------------------CCe
Confidence            789999998776432 111112111   11122 2567777653                                 377


Q ss_pred             EEEEeCCCCeEEEecccCCC------cceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          232 VLKYDPTTKQTTVLLRNLQF------PNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       232 l~~~d~~t~~~~~~~~~~~~------~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                      |+.+|+++|+..--......      ....++. + +.+|+. +..+++..+++.
T Consensus       157 l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v~~~-~~~g~v~ald~~  208 (377)
T TIGR03300       157 LTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGVLVG-FAGGKLVALDLQ  208 (377)
T ss_pred             EEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CEEEEE-CCCCEEEEEEcc
Confidence            99999988875322111000      0111222 3 345444 445788888865

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.12  E-value=0.0026  Score=63.66  Aligned_cols=174  Identities=14%  Similarity=0.125  Sum_probs=96.5

Q ss_pred             eEEEcCCCCeeEEEec-C--CEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC-cEE
Q 015463           73 SMAFDPLGRGPYTGVA-D--GRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG-DLY  146 (406)
Q Consensus        73 ~i~~d~~g~~ly~g~~-~--g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g-~L~  146 (406)
                      ++++.+||+.++..+. +  ..|+.++..  ..+.+...                       .+.....++++ +| .|+
T Consensus       200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~-----------------------~g~~~~~~~SP-DG~~la  255 (427)
T PRK02889        200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANF-----------------------KGSNSAPAWSP-DGRTLA  255 (427)
T ss_pred             cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecC-----------------------CCCccceEECC-CCCEEE
Confidence            5578888875544432 2  357877765  22222110                       11223457888 55 455


Q ss_pred             EEeCC---CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCCCCC
Q 015463          147 IADAY---FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSP  222 (406)
Q Consensus       147 Vad~~---~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  222 (406)
                      ++...   ..|+.+|.+++..+.+... .+    ........+||+ |+++...                          
T Consensus       256 ~~~~~~g~~~Iy~~d~~~~~~~~lt~~-~~----~~~~~~wSpDG~~l~f~s~~--------------------------  304 (427)
T PRK02889        256 VALSRDGNSQIYTVNADGSGLRRLTQS-SG----IDTEPFFSPDGRSIYFTSDR--------------------------  304 (427)
T ss_pred             EEEccCCCceEEEEECCCCCcEECCCC-CC----CCcCeEEcCCCCEEEEEecC--------------------------
Confidence            44332   2489999887776655332 11    123457889995 5655321                          


Q ss_pred             CcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCC--CeEEEEEeeCCCCcceeeeecCCCCCCce
Q 015463          223 IKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGNLEAFAILPGYPDNV  300 (406)
Q Consensus       223 ~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~--~~i~~~~~~g~~~~~~~~~~~l~g~pd~i  300 (406)
                          .+.-.|+.++..+++.+.+..........+++|||+.++++....  ..|+.+++.+.   ....+... +.....
T Consensus       305 ----~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g---~~~~lt~~-~~~~~p  376 (427)
T PRK02889        305 ----GGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG---QVTALTDT-TRDESP  376 (427)
T ss_pred             ----CCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC---CeEEccCC-CCccCc
Confidence                112358888887776655542222233578999999987765433  36888887643   22222211 123456


Q ss_pred             EECCCCCEE
Q 015463          301 RTNEKGEFW  309 (406)
Q Consensus       301 ~~d~~G~lw  309 (406)
                      ..++||+..
T Consensus       377 ~~spdg~~l  385 (427)
T PRK02889        377 SFAPNGRYI  385 (427)
T ss_pred             eECCCCCEE
Confidence            778888743

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.12  E-value=0.0046  Score=62.00  Aligned_cols=138  Identities=18%  Similarity=0.134  Sum_probs=83.2

Q ss_pred             ceEEEEeCCCCc-EE-EEeCC--CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccc
Q 015463          133 PLGLRFDKKTGD-LY-IADAY--FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKE  207 (406)
Q Consensus       133 p~gi~~d~~~g~-L~-Vad~~--~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~  207 (406)
                      ....++.+ +|+ |. +....  ..|+.+|.++++.+.+... .+    ......+.+||+ |.++.+.           
T Consensus       204 v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~-~g----~~~~~~~SPDG~~la~~~~~-----------  266 (435)
T PRK05137        204 VLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQRELVGNF-PG----MTFAPRFSPDGRKVVMSLSQ-----------  266 (435)
T ss_pred             eEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcEEEeecC-CC----cccCcEECCCCCEEEEEEec-----------
Confidence            34567888 554 43 33222  3699999998876655322 11    233567889995 5555421           


Q ss_pred             cccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCC--CCeEEEEEeeCCCCc
Q 015463          208 NIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS--VGRLHKYWLIGEKAG  285 (406)
Q Consensus       208 ~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~--~~~i~~~~~~g~~~~  285 (406)
                                         .+...|+.+|.++++.+.+..........+++||++.++++...  ...|+++++++... 
T Consensus       267 -------------------~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-  326 (435)
T PRK05137        267 -------------------GGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-  326 (435)
T ss_pred             -------------------CCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-
Confidence                               11246999999988887765543334567899999988776543  24788888765322 


Q ss_pred             ceeeeecCCCCCCceEECCCCCEE
Q 015463          286 NLEAFAILPGYPDNVRTNEKGEFW  309 (406)
Q Consensus       286 ~~~~~~~l~g~pd~i~~d~~G~lw  309 (406)
                        +.+....+.-.....+++|+..
T Consensus       327 --~~lt~~~~~~~~~~~SpdG~~i  348 (435)
T PRK05137        327 --RRISFGGGRYSTPVWSPRGDLI  348 (435)
T ss_pred             --EEeecCCCcccCeEECCCCCEE
Confidence              2222112222345677888743

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=98.11  E-value=2.4e-05  Score=59.02  Aligned_cols=53  Identities=25%  Similarity=0.419  Sum_probs=46.3

Q ss_pred             cCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          226 TKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       226 ~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                      +.+.|.++.||++  +.+++++++.+||||++++|++.+||++..++.|..|...
T Consensus        32 ~~~~~~Vvyyd~~--~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~   84 (86)
T PF01731_consen   32 GLPWGNVVYYDGK--EVKVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH   84 (86)
T ss_pred             cCCCceEEEEeCC--EeEEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence            3445779999985  6788899999999999999999999999999999999764

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=98.07  E-value=0.00079  Score=63.40  Aligned_cols=194  Identities=16%  Similarity=0.214  Sum_probs=106.3

Q ss_pred             ceEEEcCCCCeeEEEecC------------CEEEEEeCC--ce-eEEEeecCCCccccCCCCCcccccccCCcCCcceEE
Q 015463           72 ESMAFDPLGRGPYTGVAD------------GRILFWDGL--KW-TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGL  136 (406)
Q Consensus        72 e~i~~d~~g~~ly~g~~~------------g~I~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi  136 (406)
                      -++.+|+.|++|.+.+..            -+|+.+|..  ++ +.+.....                 ..........+
T Consensus         4 ~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~-----------------~~~~~s~lndl   66 (287)
T PF03022_consen    4 QRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPD-----------------IAPPDSFLNDL   66 (287)
T ss_dssp             EEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CC-----------------CS-TCGGEEEE
T ss_pred             cEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChH-----------------HcccccccceE
Confidence            467888888843344331            378999876  32 33322211                 11123445678


Q ss_pred             EEeCCC-----CcEEEEeCC-CcEEEEeCCCCeEEEccccc------------CCcccc---cccceEEcC---CC-CEE
Q 015463          137 RFDKKT-----GDLYIADAY-FGLMKVGPEGGLATSLATEA------------EGVPLR---FTNDLDIDD---EG-NVY  191 (406)
Q Consensus       137 ~~d~~~-----g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~------------~~~~~~---~~~~l~~d~---dG-~ly  191 (406)
                      ++|..+     +..||+|.. .||..+|..+++...+....            .+..+.   .+.+++..+   +| .+|
T Consensus        67 ~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LY  146 (287)
T PF03022_consen   67 VVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLY  146 (287)
T ss_dssp             EEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEE
T ss_pred             EEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEE
Confidence            888632     468999997 68999999998876654321            111111   122334332   32 466


Q ss_pred             EEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCC-------------CCeEEEecccCCCcceEEEe
Q 015463          192 FTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPT-------------TKQTTVLLRNLQFPNGLSLS  258 (406)
Q Consensus       192 ~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~-------------t~~~~~~~~~~~~~ngi~l~  258 (406)
                      +...++                                ..+|+...+             ..+++.+.+......|++++
T Consensus       147 f~~lss--------------------------------~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D  194 (287)
T PF03022_consen  147 FHPLSS--------------------------------RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID  194 (287)
T ss_dssp             EEETT---------------------------------SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred             EEeCCC--------------------------------CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence            654321                                123333211             01122222222355789999


Q ss_pred             cCCCEEEEEeCCCCeEEEEEeeCCCC-cceeeee-c-C-CCCCCceEECC--CCCEEEEEccC
Q 015463          259 KDKSFFVFCEGSVGRLHKYWLIGEKA-GNLEAFA-I-L-PGYPDNVRTNE--KGEFWVAIHCR  315 (406)
Q Consensus       259 ~d~~~l~v~~t~~~~i~~~~~~g~~~-~~~~~~~-~-l-~g~pd~i~~d~--~G~lwv~~~~~  315 (406)
                      ++| .+|+++-..+.|.+++..++-. .+.+++. + . --+|+++.++.  +|.||+..+.-
T Consensus       195 ~~G-~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snrl  256 (287)
T PF03022_consen  195 PNG-NLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNRL  256 (287)
T ss_dssp             TTT-EEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S-
T ss_pred             CCC-cEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECcc
Confidence            866 6999999999999999876422 2445554 2 1 35799999999  99999998653

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.07  E-value=0.00012  Score=74.68  Aligned_cols=144  Identities=18%  Similarity=0.268  Sum_probs=99.3

Q ss_pred             CcceEEEEeCCCCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCC-CEEEEeCCCchhhhcccccc
Q 015463          131 GRPLGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRQMQKEN  208 (406)
Q Consensus       131 ~~p~gi~~d~~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG-~ly~t~~~~~~~~~~~~~~~  208 (406)
                      .-|.||.||-.+..+|-.|.. ..|-+-..++++-+.+...    .+..|.+|++|--+ +||++|+.            
T Consensus      1025 ~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~----~L~SPEGiAVDh~~Rn~ywtDS~------------ 1088 (1289)
T KOG1214|consen 1025 SIIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNS----GLISPEGIAVDHIRRNMYWTDSV------------ 1088 (1289)
T ss_pred             ceeeeeecccccceEEEeecCCCccccccccCCCCceeecc----cCCCccceeeeeccceeeeeccc------------
Confidence            337899998745556666654 5577777777665554332    35678999999765 89999973            


Q ss_pred             ccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEE-ecccCCCcceEEEecCCCEEEEEeCCC--CeEEEEEeeCCCCc
Q 015463          209 IPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTV-LLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAG  285 (406)
Q Consensus       209 ~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~-~~~~~~~~ngi~l~~d~~~l~v~~t~~--~~i~~~~~~g~~~~  285 (406)
                         ++-+|               +-.+|.+  +.++ +.+++-+|.+|++++=+..|||++..+  -.|-+.+++|.   
T Consensus      1089 ---lD~Ie---------------vA~LdG~--~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~--- 1145 (1289)
T KOG1214|consen 1089 ---LDKIE---------------VALLDGS--ERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGE--- 1145 (1289)
T ss_pred             ---cchhh---------------eeecCCc--eeeEEEeecccCcceEEeecccCceeeccccccCCcceeeccCCc---
Confidence               33333               5555543  3333 357889999999999888999998643  35777777763   


Q ss_pred             ceeeee-cCCCCCCceEECCCCC--EEEEEc
Q 015463          286 NLEAFA-ILPGYPDNVRTNEKGE--FWVAIH  313 (406)
Q Consensus       286 ~~~~~~-~l~g~pd~i~~d~~G~--lwv~~~  313 (406)
                      +.++|+ +.-|+|+|+.+|+.-+  -||-..
T Consensus      1146 NrRilin~DigLPNGLtfdpfs~~LCWvDAG 1176 (1289)
T KOG1214|consen 1146 NRRILINTDIGLPNGLTFDPFSKLLCWVDAG 1176 (1289)
T ss_pred             cceEEeecccCCCCCceeCcccceeeEEecC
Confidence            346776 4568999999998776  477543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.07  E-value=0.0035  Score=62.67  Aligned_cols=175  Identities=11%  Similarity=0.091  Sum_probs=99.5

Q ss_pred             ceEEEcCCCCee-EEEecC--CEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC-cE
Q 015463           72 ESMAFDPLGRGP-YTGVAD--GRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG-DL  145 (406)
Q Consensus        72 e~i~~d~~g~~l-y~g~~~--g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g-~L  145 (406)
                      .+..++++|+.| |+...+  ..|+.++.+  ..+.+...                       .+......+++ +| .|
T Consensus       202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~-----------------------~g~~~~~~~Sp-DG~~l  257 (430)
T PRK00178        202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF-----------------------EGLNGAPAWSP-DGSKL  257 (430)
T ss_pred             eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC-----------------------CCCcCCeEECC-CCCEE
Confidence            556788898855 554333  357777765  22222110                       11122357787 55 45


Q ss_pred             EEEeCC---CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCCCC
Q 015463          146 YIADAY---FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPS  221 (406)
Q Consensus       146 ~Vad~~---~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~  221 (406)
                      ++....   ..|+.+|.++++.+.+.... +    ......+.+||+ |+++...                         
T Consensus       258 a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~-~----~~~~~~~spDg~~i~f~s~~-------------------------  307 (430)
T PRK00178        258 AFVLSKDGNPEIYVMDLASRQLSRVTNHP-A----IDTEPFWGKDGRTLYFTSDR-------------------------  307 (430)
T ss_pred             EEEEccCCCceEEEEECCCCCeEEcccCC-C----CcCCeEECCCCCEEEEEECC-------------------------
Confidence            544332   24999999988876654321 1    123456788885 6666421                         


Q ss_pred             CCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCC--CeEEEEEeeCCCCcceeeeecCCCCCCc
Q 015463          222 PIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGNLEAFAILPGYPDN  299 (406)
Q Consensus       222 ~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~--~~i~~~~~~g~~~~~~~~~~~l~g~pd~  299 (406)
                           .+...|+.+|..+++.+.+..........+++||++.++++....  ..|+.+++++.   ..+.+.+. +....
T Consensus       308 -----~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg---~~~~lt~~-~~~~~  378 (430)
T PRK00178        308 -----GGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG---SVRILTDT-SLDES  378 (430)
T ss_pred             -----CCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCC---CEEEccCC-CCCCC
Confidence                 112469999988888766643322333467899999998876533  35778887642   22333221 12233


Q ss_pred             eEECCCCCEE
Q 015463          300 VRTNEKGEFW  309 (406)
Q Consensus       300 i~~d~~G~lw  309 (406)
                      ..++++|+..
T Consensus       379 p~~spdg~~i  388 (430)
T PRK00178        379 PSVAPNGTML  388 (430)
T ss_pred             ceECCCCCEE
Confidence            4677888743

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.04  E-value=0.0046  Score=61.35  Aligned_cols=173  Identities=16%  Similarity=0.137  Sum_probs=98.6

Q ss_pred             eEEEcCCCCeeEEEecC---CEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEE
Q 015463           73 SMAFDPLGRGPYTGVAD---GRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (406)
Q Consensus        73 ~i~~d~~g~~ly~g~~~---g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~V  147 (406)
                      +..++++|+.++..+..   ..|+.++..  ..+.+...                       .+....+++.+++..|++
T Consensus       194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~-----------------------~~~~~~~~~spDg~~l~~  250 (417)
T TIGR02800       194 SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASF-----------------------PGMNGAPAFSPDGSKLAV  250 (417)
T ss_pred             cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecC-----------------------CCCccceEECCCCCEEEE
Confidence            45678888855544432   468888765  22222110                       122334678883334665


Q ss_pred             EeCC---CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCCCCCC
Q 015463          148 ADAY---FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPI  223 (406)
Q Consensus       148 ad~~---~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  223 (406)
                      +...   ..|+.++.+++..+.+.... +    ......+.+||. |+++...                           
T Consensus       251 ~~~~~~~~~i~~~d~~~~~~~~l~~~~-~----~~~~~~~s~dg~~l~~~s~~---------------------------  298 (417)
T TIGR02800       251 SLSKDGNPDIYVMDLDGKQLTRLTNGP-G----IDTEPSWSPDGKSIAFTSDR---------------------------  298 (417)
T ss_pred             EECCCCCccEEEEECCCCCEEECCCCC-C----CCCCEEECCCCCEEEEEECC---------------------------
Confidence            5433   24999999888766654321 1    122346677885 5554321                           


Q ss_pred             cccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCC--CeEEEEEeeCCCCcceeeeecCCCCCCceE
Q 015463          224 KITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGNLEAFAILPGYPDNVR  301 (406)
Q Consensus       224 ~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~--~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~  301 (406)
                         .....|+.+|..+++.+.+.........+++++|++.++++....  .+|+.+++.+   +..+.+.. .+......
T Consensus       299 ---~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~---~~~~~l~~-~~~~~~p~  371 (417)
T TIGR02800       299 ---GGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG---GGERVLTD-TGLDESPS  371 (417)
T ss_pred             ---CCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC---CCeEEccC-CCCCCCce
Confidence               112369999998887766654444455678999999888876543  3688888764   22233221 11223345


Q ss_pred             ECCCCC
Q 015463          302 TNEKGE  307 (406)
Q Consensus       302 ~d~~G~  307 (406)
                      +.++|+
T Consensus       372 ~spdg~  377 (417)
T TIGR02800       372 FAPNGR  377 (417)
T ss_pred             ECCCCC
Confidence            667776

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.03  E-value=0.0058  Score=60.40  Aligned_cols=179  Identities=15%  Similarity=0.042  Sum_probs=96.5

Q ss_pred             CCcEEEEeCCCcEEEEeCCCCeEEE-c--ccccCCcccccc----cceEEcCCCCEEEEeCCCchhhhcccccccccccc
Q 015463          142 TGDLYIADAYFGLMKVGPEGGLATS-L--ATEAEGVPLRFT----NDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLC  214 (406)
Q Consensus       142 ~g~L~Vad~~~gl~~~d~~~~~~~~-l--~~~~~~~~~~~~----~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~  214 (406)
                      ++.++++...+.++.+|.++|+..- .  ........+...    ..-++. +|.+|+++..                  
T Consensus       205 ~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~-~~~vy~~~~~------------------  265 (394)
T PRK11138        205 FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVV-GGVVYALAYN------------------  265 (394)
T ss_pred             CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEE-CCEEEEEEcC------------------
Confidence            4668887766778888888775321 1  000000000000    111222 5788887642                  


Q ss_pred             ccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee-c-
Q 015463          215 SSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-I-  292 (406)
Q Consensus       215 ~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~-~-  292 (406)
                                     |.++.+|+++|+..- ...+..+..+++  +++.+|+... .++++.++.+..   + +++. + 
T Consensus       266 ---------------g~l~ald~~tG~~~W-~~~~~~~~~~~~--~~~~vy~~~~-~g~l~ald~~tG---~-~~W~~~~  322 (394)
T PRK11138        266 ---------------GNLVALDLRSGQIVW-KREYGSVNDFAV--DGGRIYLVDQ-NDRVYALDTRGG---V-ELWSQSD  322 (394)
T ss_pred             ---------------CeEEEEECCCCCEEE-eecCCCccCcEE--ECCEEEEEcC-CCeEEEEECCCC---c-EEEcccc
Confidence                           789999999986532 222222223333  4556777754 578988887532   1 1221 1 


Q ss_pred             CCC-CCCceEECCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECC-CCCEEEEEE
Q 015463          293 LPG-YPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSP-EGKILQVLE  370 (406)
Q Consensus       293 l~g-~pd~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~  370 (406)
                      +.+ .....++ .+|.+|++...+                                       .++++|+ +|+++..+.
T Consensus       323 ~~~~~~~sp~v-~~g~l~v~~~~G---------------------------------------~l~~ld~~tG~~~~~~~  362 (394)
T PRK11138        323 LLHRLLTAPVL-YNGYLVVGDSEG---------------------------------------YLHWINREDGRFVAQQK  362 (394)
T ss_pred             cCCCcccCCEE-ECCEEEEEeCCC---------------------------------------EEEEEECCCCCEEEEEE
Confidence            111 1111222 357788876544                                       2666775 588887765


Q ss_pred             CCCCCeeeceeEEEEeCCEEEEecCCCCeEEEEeCC
Q 015463          371 DSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDLS  406 (406)
Q Consensus       371 ~~~g~~~~~~s~~~~~~g~Ly~Gs~~~~~i~~~~~~  406 (406)
                      -..+.   ..+.-...+++||+++. +..|..++++
T Consensus       363 ~~~~~---~~s~P~~~~~~l~v~t~-~G~l~~~~~~  394 (394)
T PRK11138        363 VDSSG---FLSEPVVADDKLLIQAR-DGTVYAITRP  394 (394)
T ss_pred             cCCCc---ceeCCEEECCEEEEEeC-CceEEEEeCC
Confidence            32222   12233346889999987 5567777653

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=98.02  E-value=0.0044  Score=56.23  Aligned_cols=200  Identities=11%  Similarity=0.097  Sum_probs=122.0

Q ss_pred             ccccccceeccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcce
Q 015463           55 NLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPL  134 (406)
Q Consensus        55 ~~l~~~~~~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  134 (406)
                      ..+-++.+.+.|.-+.-++++..++|+..+.++.|+.+..||...-+.....       |             ......+
T Consensus        50 ~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f-------~-------------GH~~dVl  109 (315)
T KOG0279|consen   50 IKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRF-------V-------------GHTKDVL  109 (315)
T ss_pred             cccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEE-------E-------------ecCCceE
Confidence            3444555666666667788899999998888999999999997621111111       1             1123478


Q ss_pred             EEEEeCCCCcEEEEeC-CCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCC-CEEEEeCCCchhhhcccccccccc
Q 015463          135 GLRFDKKTGDLYIADA-YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRQMQKENIPLQ  212 (406)
Q Consensus       135 gi~~d~~~g~L~Vad~-~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~  212 (406)
                      +++|++ +.+..|.-+ .+.|..++..+...-.+...  + .-..++.+.+.|+- +.++...+                
T Consensus       110 sva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~--~-~~~WVscvrfsP~~~~p~Ivs~s----------------  169 (315)
T KOG0279|consen  110 SVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHED--S-HREWVSCVRFSPNESNPIIVSAS----------------  169 (315)
T ss_pred             EEEecC-CCceeecCCCcceeeeeeecccEEEEEecC--C-CcCcEEEEEEcCCCCCcEEEEcc----------------
Confidence            999999 566555544 46788888876644333222  1 13578889998874 55554432                


Q ss_pred             ccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec-ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee
Q 015463          213 LCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA  291 (406)
Q Consensus       213 ~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~  291 (406)
                                     .++.|-.+|.++-+.+.-. ..-...|-+++||||. +..+.-..+.++.+++...+.    .+.
T Consensus       170 ---------------~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k~----lys  229 (315)
T KOG0279|consen  170 ---------------WDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGKN----LYS  229 (315)
T ss_pred             ---------------CCceEEEEccCCcchhhccccccccEEEEEECCCCC-EEecCCCCceEEEEEccCCce----eEe
Confidence                           2466777888766554432 2234457899999997 445544456777777763211    111


Q ss_pred             cCCC--CCCceEECCCCCEEEEEccCC
Q 015463          292 ILPG--YPDNVRTNEKGEFWVAIHCRR  316 (406)
Q Consensus       292 ~l~g--~pd~i~~d~~G~lwv~~~~~~  316 (406)
                       +.+  .-..+++.++ ++|++...+.
T Consensus       230 -l~a~~~v~sl~fspn-rywL~~at~~  254 (315)
T KOG0279|consen  230 -LEAFDIVNSLCFSPN-RYWLCAATAT  254 (315)
T ss_pred             -ccCCCeEeeEEecCC-ceeEeeccCC
Confidence             111  1245677664 6888865543

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.02  E-value=0.0056  Score=56.33  Aligned_cols=192  Identities=12%  Similarity=0.138  Sum_probs=105.8

Q ss_pred             ccCcceEEEcCCCCeeEEEecC-CEEEEEeCC-c-eeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc
Q 015463           68 IQGPESMAFDPLGRGPYTGVAD-GRILFWDGL-K-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (406)
Q Consensus        68 ~~gpe~i~~d~~g~~ly~g~~~-g~I~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~  144 (406)
                      ...-.++.++++-+.||+-+.. -.|+.++.+ . ...+...                      ....|-+|..-. +|.
T Consensus        85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~----------------------g~~DpE~Ieyig-~n~  141 (316)
T COG3204          85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT----------------------GFSDPETIEYIG-GNQ  141 (316)
T ss_pred             cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc----------------------ccCChhHeEEec-CCE
Confidence            3456889999998878876544 467777665 2 2222111                      123466677664 455


Q ss_pred             EEEEeCC-CcE--EEEeCCCCeEEEcc----cccCCcccccccceEEcCC-CCEEEEeCCCchhhhcccccccccccccc
Q 015463          145 LYIADAY-FGL--MKVGPEGGLATSLA----TEAEGVPLRFTNDLDIDDE-GNVYFTDSSTNYQRRQMQKENIPLQLCSS  216 (406)
Q Consensus       145 L~Vad~~-~gl--~~~d~~~~~~~~l~----~~~~~~~~~~~~~l~~d~d-G~ly~t~~~~~~~~~~~~~~~~~~~~~~e  216 (406)
                      .-|++.. +.+  +.+|+++.....-.    -...........+++.|+. +++|++-.                     
T Consensus       142 fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKE---------------------  200 (316)
T COG3204         142 FVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKE---------------------  200 (316)
T ss_pred             EEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEc---------------------
Confidence            5555554 334  45566554322111    0111122445678999985 57888752                     


Q ss_pred             CCCCCCCcccCCCCeEEEEeCCCCeEEEeccc---------CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcce
Q 015463          217 LNDPSPIKITKDTGRVLKYDPTTKQTTVLLRN---------LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNL  287 (406)
Q Consensus       217 ~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~---------~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~  287 (406)
                               ..+ -+|+.++............         +....|+.+.+..+.++|-......+..++.+|.-.+..
T Consensus       201 ---------r~P-~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~l  270 (316)
T COG3204         201 ---------RNP-IGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELL  270 (316)
T ss_pred             ---------cCC-cEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeE
Confidence                     111 2366665433222111100         122346777766677777777777888888876421111


Q ss_pred             ee-------eecCCCCCCceEECCCCCEEEEEcc
Q 015463          288 EA-------FAILPGYPDNVRTNEKGEFWVAIHC  314 (406)
Q Consensus       288 ~~-------~~~l~g~pd~i~~d~~G~lwv~~~~  314 (406)
                      ..       -.+.|+ +.||+.|.+|+|||..-.
T Consensus       271 sL~~g~~gL~~dipq-aEGiamDd~g~lYIvSEP  303 (316)
T COG3204         271 SLTKGNHGLSSDIPQ-AEGIAMDDDGNLYIVSEP  303 (316)
T ss_pred             EeccCCCCCcccCCC-cceeEECCCCCEEEEecC
Confidence            11       112233 679999999999998743

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.01  E-value=5.8e-05  Score=66.67  Aligned_cols=80  Identities=25%  Similarity=0.375  Sum_probs=57.3

Q ss_pred             CcceEEEEeCCCCcEEEEeCC-CcE--EEEeCCCCeEEE---cccccC--CcccccccceEEcCCCCEEEEeCCCchhhh
Q 015463          131 GRPLGLRFDKKTGDLYIADAY-FGL--MKVGPEGGLATS---LATEAE--GVPLRFTNDLDIDDEGNVYFTDSSTNYQRR  202 (406)
Q Consensus       131 ~~p~gi~~d~~~g~L~Vad~~-~gl--~~~d~~~~~~~~---l~~~~~--~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~  202 (406)
                      +-++||+.|.+...+|+.|+. ..+  +.+|..||.+..   +.....  ......|.++++|.+|+||+++.+      
T Consensus       158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n------  231 (310)
T KOG4499|consen  158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN------  231 (310)
T ss_pred             cCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec------
Confidence            457899999866788988876 467  566677775422   111111  112236899999999999999975      


Q ss_pred             ccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeE
Q 015463          203 QMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQT  242 (406)
Q Consensus       203 ~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~  242 (406)
                                                .|+++++||.||+.
T Consensus       232 --------------------------g~~V~~~dp~tGK~  245 (310)
T KOG4499|consen  232 --------------------------GGTVQKVDPTTGKI  245 (310)
T ss_pred             --------------------------CcEEEEECCCCCcE
Confidence                                      37899999999975

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.01  E-value=0.0039  Score=62.53  Aligned_cols=174  Identities=11%  Similarity=0.078  Sum_probs=102.1

Q ss_pred             ceEEEcCCCCee-EEEec--CCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-E
Q 015463           72 ESMAFDPLGRGP-YTGVA--DGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-L  145 (406)
Q Consensus        72 e~i~~d~~g~~l-y~g~~--~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-L  145 (406)
                      .++.+.+||+.| |+...  +..|+.++..  ..+.+...                       .+.....++++ +|+ |
T Consensus       205 ~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~-----------------------~g~~~~~~~SP-DG~~l  260 (435)
T PRK05137        205 LTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNF-----------------------PGMTFAPRFSP-DGRKV  260 (435)
T ss_pred             EeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecC-----------------------CCcccCcEECC-CCCEE
Confidence            456788999854 44332  3578888865  22222211                       11223456787 554 5


Q ss_pred             EEEeCC---CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCCCC
Q 015463          146 YIADAY---FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPS  221 (406)
Q Consensus       146 ~Vad~~---~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~  221 (406)
                      .++...   ..|+.+|.+++..+.+.... +    ........+||+ |+++...                         
T Consensus       261 a~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~-~----~~~~~~~spDG~~i~f~s~~-------------------------  310 (435)
T PRK05137        261 VMSLSQGGNTDIYTMDLRSGTTTRLTDSP-A----IDTSPSYSPDGSQIVFESDR-------------------------  310 (435)
T ss_pred             EEEEecCCCceEEEEECCCCceEEccCCC-C----ccCceeEcCCCCEEEEEECC-------------------------
Confidence            444332   34999999988877664321 1    233467888985 6655421                         


Q ss_pred             CCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCC--CeEEEEEeeCCCCcceeeeecCCCCCCc
Q 015463          222 PIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGNLEAFAILPGYPDN  299 (406)
Q Consensus       222 ~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~--~~i~~~~~~g~~~~~~~~~~~l~g~pd~  299 (406)
                           .+...|+.+|.++++.+.+..........+++||++.++++....  .+|+.+++++.   ....+.. ......
T Consensus       311 -----~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~---~~~~lt~-~~~~~~  381 (435)
T PRK05137        311 -----SGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS---GERILTS-GFLVEG  381 (435)
T ss_pred             -----CCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCC---ceEeccC-CCCCCC
Confidence                 112469999998887776654322334578999999988775432  46888887542   2222222 122345


Q ss_pred             eEECCCCCE
Q 015463          300 VRTNEKGEF  308 (406)
Q Consensus       300 i~~d~~G~l  308 (406)
                      ..+++||+.
T Consensus       382 p~~spDG~~  390 (435)
T PRK05137        382 PTWAPNGRV  390 (435)
T ss_pred             CeECCCCCE
Confidence            677888884

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=98.00  E-value=0.00025  Score=67.48  Aligned_cols=223  Identities=23%  Similarity=0.288  Sum_probs=123.6

Q ss_pred             hHHHHHHHHHHHhCcCCCCCCccCCCCCceeeeecCCCCCCCCCCCcccccccccceeccC-cccCcceEEEcCCCCeeE
Q 015463            6 FLGLVILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNSEIKFLN-QIQGPESMAFDPLGRGPY   84 (406)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~gpe~i~~d~~g~~ly   84 (406)
                      ++..+++++++++.+..+..+.+...+++.     ..+..+..++..+++.+..+|.+..+ +..||+.++.| +..++|
T Consensus         7 ~~~~i~~~~~~~~~l~~l~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~E~~~fd~~~~gp~~~v~d-g~il~~   80 (376)
T KOG1520|consen    7 LFLFIFLFLAVIILLYLLSGSSIAGSPDDR-----LFSKLPLLGKLIPNNHLTGPESLLFDPQGGGPYTGVVD-GRILKY   80 (376)
T ss_pred             hhHHHHHHHHHHHhhhccCcccccCCchhc-----ccCCCCcccccccccccCChhhheecccCCCceEEEEC-CceEEE
Confidence            444444555666666656665554443332     11122233456777767666655544 44555555543 333589


Q ss_pred             EEecCCEEEEEeCC------ceeE--EEeecCCCccccCC---------------------------CCCcccccccCCc
Q 015463           85 TGVADGRILFWDGL------KWTD--FAFTSNNRSELCNP---------------------------KPIATSYLKNEHI  129 (406)
Q Consensus        85 ~g~~~g~I~~~~~~------~~~~--~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~  129 (406)
                      +|...|.+.+.+..      ....  ....    ...|.-                           .+..+.. .....
T Consensus        81 ~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~----e~~CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~-l~~~~  155 (376)
T KOG1520|consen   81 TGNDDGWVKFADTKDSTNRSQCCDPGSFET----EPLCGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAEL-LADEA  155 (376)
T ss_pred             eccCceEEEEEeccccccccccCCCcceec----ccccCCcceEEeccCCCeEEEEecceeeEEECCCCCccee-ccccc
Confidence            99999988887652      0000  0000    001210                           0000000 01123


Q ss_pred             CCcc----eEEEEeCCCCcEEEEeCC------------------CcEEEEeCCCCeEEEcccccCCcccccccceEEcCC
Q 015463          130 CGRP----LGLRFDKKTGDLYIADAY------------------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDE  187 (406)
Q Consensus       130 ~~~p----~gi~~d~~~g~L~Vad~~------------------~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~d  187 (406)
                      .|+|    .++.+++ +|.+|..|+.                  +++++||+.++..+++..     .+.++|+++..+|
T Consensus       156 ~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld-----~L~F~NGlaLS~d  229 (376)
T KOG1520|consen  156 EGKPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLD-----GLYFPNGLALSPD  229 (376)
T ss_pred             cCeeeeecCceeEcC-CCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhh-----cccccccccCCCC
Confidence            4555    3677887 8999998753                  248888888776666543     3678999999999


Q ss_pred             CCEEEE-eCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCC---eEEEecccC-CCcceEEEecCCC
Q 015463          188 GNVYFT-DSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTK---QTTVLLRNL-QFPNGLSLSKDKS  262 (406)
Q Consensus       188 G~ly~t-~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~---~~~~~~~~~-~~~ngi~l~~d~~  262 (406)
                      +...+. ..+                                ..++.+|-.+..   +.+++.+++ .+|..|..+++|+
T Consensus       230 ~sfvl~~Et~--------------------------------~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G~  277 (376)
T KOG1520|consen  230 GSFVLVAETT--------------------------------TARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTGH  277 (376)
T ss_pred             CCEEEEEeec--------------------------------cceeeeeEecCCccCchhhHhhcCCCCCcceeECCCCC
Confidence            965544 332                                346666655443   347777755 4678888888887


Q ss_pred             EEEEEeCCCCeEEEE
Q 015463          263 FFVFCEGSVGRLHKY  277 (406)
Q Consensus       263 ~l~v~~t~~~~i~~~  277 (406)
                      +.+-..+.+..++++
T Consensus       278 fWVal~~~~~~~~~~  292 (376)
T KOG1520|consen  278 FWVALHSKRSTLWRL  292 (376)
T ss_pred             EEEEEecccchHHHh
Confidence            543333333334443

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.99  E-value=0.0013  Score=60.13  Aligned_cols=152  Identities=18%  Similarity=0.212  Sum_probs=95.7

Q ss_pred             CcceEEEcCCCCeeEEEec-CCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463           70 GPESMAFDPLGRGPYTGVA-DGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va  148 (406)
                      .-|+|+.-. +. +|.-|+ ++..+.+|.+.++.+....                  .   .+.-+||+.|  +..||++
T Consensus        91 FgEGit~~~-d~-l~qLTWk~~~~f~yd~~tl~~~~~~~------------------y---~~EGWGLt~d--g~~Li~S  145 (264)
T PF05096_consen   91 FGEGITILG-DK-LYQLTWKEGTGFVYDPNTLKKIGTFP------------------Y---PGEGWGLTSD--GKRLIMS  145 (264)
T ss_dssp             -EEEEEEET-TE-EEEEESSSSEEEEEETTTTEEEEEEE----------------------SSS--EEEEC--SSCEEEE
T ss_pred             cceeEEEEC-CE-EEEEEecCCeEEEEccccceEEEEEe------------------c---CCcceEEEcC--CCEEEEE
Confidence            457887752 33 776655 5777888887443332211                  0   1345899976  5789999


Q ss_pred             eCCCcEEEEeCCCCeE-EEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463          149 DAYFGLMKVGPEGGLA-TSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK  227 (406)
Q Consensus       149 d~~~gl~~~d~~~~~~-~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  227 (406)
                      |....|+.+||++-+. +.+.....+.+....|.|..- +|.||.-.+.                               
T Consensus       146 DGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~-------------------------------  193 (264)
T PF05096_consen  146 DGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQ-------------------------------  193 (264)
T ss_dssp             -SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETT-------------------------------
T ss_pred             CCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCC-------------------------------
Confidence            9889999999986433 233333467778888888876 7999987653                               


Q ss_pred             CCCeEEEEeCCCCeEEEecc--c--------------CCCcceEEEecCCCEEEEEeCCCCeEEEEEe
Q 015463          228 DTGRVLKYDPTTKQTTVLLR--N--------------LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWL  279 (406)
Q Consensus       228 ~~g~l~~~d~~t~~~~~~~~--~--------------~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~  279 (406)
                       +..|+++||+||++....+  +              ..-.||||.+++.+.+|++.-.=..++.+.+
T Consensus       194 -td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l  260 (264)
T PF05096_consen  194 -TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKL  260 (264)
T ss_dssp             -SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEEE
T ss_pred             -CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEE
Confidence             2579999999999876531  1              1225899999999999997643345666554

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PRK03629 tolB translocation protein TolB; Provisional

Probab=97.99  E-value=0.0068  Score=60.64  Aligned_cols=137  Identities=12%  Similarity=0.103  Sum_probs=81.9

Q ss_pred             EEEEeCCCCc-EEEEeCC---CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccc
Q 015463          135 GLRFDKKTGD-LYIADAY---FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENI  209 (406)
Q Consensus       135 gi~~d~~~g~-L~Vad~~---~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~  209 (406)
                      ...+++ +|+ |+++...   ..|+.+|.++++.+.+....     .........+||+ |+++...             
T Consensus       247 ~~~~SP-DG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~-----~~~~~~~wSPDG~~I~f~s~~-------------  307 (429)
T PRK03629        247 APAFSP-DGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR-----SNNTEPTWFPDSQNLAYTSDQ-------------  307 (429)
T ss_pred             CeEECC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCC-----CCcCceEECCCCCEEEEEeCC-------------
Confidence            357888 554 5554332   24999999988777654321     1234668889996 5554321             


Q ss_pred             cccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCC--CeEEEEEeeCCCCcce
Q 015463          210 PLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGNL  287 (406)
Q Consensus       210 ~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~--~~i~~~~~~g~~~~~~  287 (406)
                                       .+.-.||.+|.++++.+.+..........+++||++.++++....  ..|+.+++++.   ..
T Consensus       308 -----------------~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g---~~  367 (429)
T PRK03629        308 -----------------AGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG---GV  367 (429)
T ss_pred             -----------------CCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCC---Ce
Confidence                             012369999998887766643333344678999999987765432  45777877643   22


Q ss_pred             eeeecCCCCCCceEECCCCCEEEE
Q 015463          288 EAFAILPGYPDNVRTNEKGEFWVA  311 (406)
Q Consensus       288 ~~~~~l~g~pd~i~~d~~G~lwv~  311 (406)
                      +.+.. ...-.+..+++||+..+.
T Consensus       368 ~~Lt~-~~~~~~p~~SpDG~~i~~  390 (429)
T PRK03629        368 QVLTD-TFLDETPSIAPNGTMVIY  390 (429)
T ss_pred             EEeCC-CCCCCCceECCCCCEEEE
Confidence            33322 111224567788884443

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.98  E-value=0.011  Score=58.98  Aligned_cols=171  Identities=11%  Similarity=0.077  Sum_probs=97.5

Q ss_pred             eEEEcCCCC-eeEE-Eec--CCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEE
Q 015463           73 SMAFDPLGR-GPYT-GVA--DGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (406)
Q Consensus        73 ~i~~d~~g~-~ly~-g~~--~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~  146 (406)
                      +..+.++|+ ++|. ...  ...|+.++..  +.+.+...                       .+......+++++..|.
T Consensus       192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~-----------------------~g~~~~~~~SPDG~~la  248 (419)
T PRK04043        192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS-----------------------QGMLVVSDVSKDGSKLL  248 (419)
T ss_pred             eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC-----------------------CCcEEeeEECCCCCEEE
Confidence            456788887 3554 333  2468888765  23333211                       11122235677333455


Q ss_pred             EEeCC---CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCC-CEEEEeCCCchhhhccccccccccccccCCCCCC
Q 015463          147 IADAY---FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSP  222 (406)
Q Consensus       147 Vad~~---~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  222 (406)
                      +....   ..|+.++.+++..+.+... .+.    -....+.+|| .|+|+...                          
T Consensus       249 ~~~~~~g~~~Iy~~dl~~g~~~~LT~~-~~~----d~~p~~SPDG~~I~F~Sdr--------------------------  297 (419)
T PRK04043        249 LTMAPKGQPDIYLYDTNTKTLTQITNY-PGI----DVNGNFVEDDKRIVFVSDR--------------------------  297 (419)
T ss_pred             EEEccCCCcEEEEEECCCCcEEEcccC-CCc----cCccEECCCCCEEEEEECC--------------------------
Confidence            44332   3599999988877766432 111    1123678899 58887632                          


Q ss_pred             CcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCC--------CeEEEEEeeCCCCcceeeeecCC
Q 015463          223 IKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--------GRLHKYWLIGEKAGNLEAFAILP  294 (406)
Q Consensus       223 ~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~--------~~i~~~~~~g~~~~~~~~~~~l~  294 (406)
                          .+...||++|.++++.+.+..... .+ .+++||++.+.++....        .+|+.+++++.   ..+.+.. .
T Consensus       298 ----~g~~~Iy~~dl~~g~~~rlt~~g~-~~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g---~~~~LT~-~  367 (419)
T PRK04043        298 ----LGYPNIFMKKLNSGSVEQVVFHGK-NN-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD---YIRRLTA-N  367 (419)
T ss_pred             ----CCCceEEEEECCCCCeEeCccCCC-cC-ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC---CeEECCC-C
Confidence                112469999999998876653211 12 47999999887775432        47888887643   2233322 1


Q ss_pred             CCCCceEECCCCC
Q 015463          295 GYPDNVRTNEKGE  307 (406)
Q Consensus       295 g~pd~i~~d~~G~  307 (406)
                      +.-.....++||+
T Consensus       368 ~~~~~p~~SPDG~  380 (419)
T PRK04043        368 GVNQFPRFSSDGG  380 (419)
T ss_pred             CCcCCeEECCCCC
Confidence            2222356778887

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.93  E-value=0.006  Score=59.83  Aligned_cols=62  Identities=13%  Similarity=0.146  Sum_probs=37.6

Q ss_pred             CCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCCCcEEEEe
Q 015463           80 GRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVG  158 (406)
Q Consensus        80 g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~~gl~~~d  158 (406)
                      ++.+|+++.+|.++.+|.+ +-.........                  .....|   .+.  ++.++++...+.|+.+|
T Consensus       105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~------------------~~~~~p---~v~--~~~v~v~~~~g~l~a~d  161 (377)
T TIGR03300       105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSS------------------EVLSPP---LVA--NGLVVVRTNDGRLTALD  161 (377)
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEeeeeccCc------------------eeecCC---EEE--CCEEEEECCCCeEEEEE
Confidence            3448999999999999975 21111111000                  001112   223  57888887777799999


Q ss_pred             CCCCeE
Q 015463          159 PEGGLA  164 (406)
Q Consensus       159 ~~~~~~  164 (406)
                      +++|+.
T Consensus       162 ~~tG~~  167 (377)
T TIGR03300       162 AATGER  167 (377)
T ss_pred             cCCCce
Confidence            988764

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK01742 tolB translocation protein TolB; Provisional

Probab=97.85  E-value=0.0079  Score=60.19  Aligned_cols=174  Identities=16%  Similarity=0.162  Sum_probs=98.6

Q ss_pred             cceEEEcCCCCeeEEEecC---CEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-
Q 015463           71 PESMAFDPLGRGPYTGVAD---GRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-  144 (406)
Q Consensus        71 pe~i~~d~~g~~ly~g~~~---g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-  144 (406)
                      -.++.++++|+.+...+.+   ..|+.++..  ..+.+...                       .+....+++++ +|+ 
T Consensus       206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~-----------------------~g~~~~~~wSP-DG~~  261 (429)
T PRK01742        206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF-----------------------RGHNGAPAFSP-DGSR  261 (429)
T ss_pred             cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC-----------------------CCccCceeECC-CCCE
Confidence            3567899999855443332   368888765  22222111                       01112457888 564 


Q ss_pred             EEEEeCCC---cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCCC
Q 015463          145 LYIADAYF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDP  220 (406)
Q Consensus       145 L~Vad~~~---gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~  220 (406)
                      |.++....   .|+.+|.+++..+.+... .    .........+||. |+++...                        
T Consensus       262 La~~~~~~g~~~Iy~~d~~~~~~~~lt~~-~----~~~~~~~wSpDG~~i~f~s~~------------------------  312 (429)
T PRK01742        262 LAFASSKDGVLNIYVMGANGGTPSQLTSG-A----GNNTEPSWSPDGQSILFTSDR------------------------  312 (429)
T ss_pred             EEEEEecCCcEEEEEEECCCCCeEeeccC-C----CCcCCEEECCCCCEEEEEECC------------------------
Confidence            55543322   388899888876665432 1    1245678899996 6665421                        


Q ss_pred             CCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCce
Q 015463          221 SPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNV  300 (406)
Q Consensus       221 ~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i  300 (406)
                            .+.-.|+.++..++..+.+. ...  ...+++||++.++++..  .+++++++.+.   ..+.+.. .......
T Consensus       313 ------~g~~~I~~~~~~~~~~~~l~-~~~--~~~~~SpDG~~ia~~~~--~~i~~~Dl~~g---~~~~lt~-~~~~~~~  377 (429)
T PRK01742        313 ------SGSPQVYRMSASGGGASLVG-GRG--YSAQISADGKTLVMING--DNVVKQDLTSG---STEVLSS-TFLDESP  377 (429)
T ss_pred             ------CCCceEEEEECCCCCeEEec-CCC--CCccCCCCCCEEEEEcC--CCEEEEECCCC---CeEEecC-CCCCCCc
Confidence                  11236888888766655442 211  34678999998877643  57888887532   2222211 1112345


Q ss_pred             EECCCCCEEEEE
Q 015463          301 RTNEKGEFWVAI  312 (406)
Q Consensus       301 ~~d~~G~lwv~~  312 (406)
                      .++++|+..+..
T Consensus       378 ~~sPdG~~i~~~  389 (429)
T PRK01742        378 SISPNGIMIIYS  389 (429)
T ss_pred             eECCCCCEEEEE
Confidence            678899865554

>PRK03629 tolB translocation protein TolB; Provisional

Probab=97.84  E-value=0.033  Score=55.75  Aligned_cols=139  Identities=12%  Similarity=0.102  Sum_probs=84.6

Q ss_pred             ceEEEEeCCCCc-EE-EEeCC--CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccc
Q 015463          133 PLGLRFDKKTGD-LY-IADAY--FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKE  207 (406)
Q Consensus       133 p~gi~~d~~~g~-L~-Vad~~--~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~  207 (406)
                      ....++++ +|+ |. +....  ..|+.++.++++.+.+... .+    ....+.+.+||+ |+++.+.           
T Consensus       201 ~~~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~-~~----~~~~~~~SPDG~~La~~~~~-----------  263 (429)
T PRK03629        201 LMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASF-PR----HNGAPAFSPDGSKLAFALSK-----------  263 (429)
T ss_pred             eeeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCeEEccCC-CC----CcCCeEECCCCCEEEEEEcC-----------
Confidence            34678888 564 43 33221  3589999988876655432 11    123578899995 6665431           


Q ss_pred             cccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCC--CeEEEEEeeCCCCc
Q 015463          208 NIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAG  285 (406)
Q Consensus       208 ~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~--~~i~~~~~~g~~~~  285 (406)
                                         .+...|+.+|.++++.+.+..........+++||++.++++....  .+||++++++..  
T Consensus       264 -------------------~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~--  322 (429)
T PRK03629        264 -------------------TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA--  322 (429)
T ss_pred             -------------------CCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC--
Confidence                               112359999999888887765544455788999999886664422  378888876432  


Q ss_pred             ceeeeecCCCCCCceEECCCCCEEE
Q 015463          286 NLEAFAILPGYPDNVRTNEKGEFWV  310 (406)
Q Consensus       286 ~~~~~~~l~g~pd~i~~d~~G~lwv  310 (406)
                       .+.+....+.......++||+..+
T Consensus       323 -~~~lt~~~~~~~~~~~SpDG~~Ia  346 (429)
T PRK03629        323 -PQRITWEGSQNQDADVSSDGKFMV  346 (429)
T ss_pred             -eEEeecCCCCccCEEECCCCCEEE
Confidence             222222222234566788887443

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=97.75  E-value=0.012  Score=54.52  Aligned_cols=191  Identities=18%  Similarity=0.254  Sum_probs=107.9

Q ss_pred             ccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeC
Q 015463           64 FLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK  140 (406)
Q Consensus        64 ~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~  140 (406)
                      +.+....-.|++++++|+.|.+++.|..|..||..   -...+...+                        ..++..+.+
T Consensus        61 lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~s------------------------pv~~~q~hp  116 (405)
T KOG1273|consen   61 LSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDS------------------------PVWGAQWHP  116 (405)
T ss_pred             hhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccC------------------------ccceeeecc
Confidence            34455556899999999999999999999988854   222332211                        124555655


Q ss_pred             CCCcEEEEeCCC---cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccC
Q 015463          141 KTGDLYIADAYF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSL  217 (406)
Q Consensus       141 ~~g~L~Vad~~~---gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~  217 (406)
                      .+.|..|+.--.   -+..++.  ++.+.|....++.....+....+|+.|++.++..                      
T Consensus       117 ~k~n~~va~~~~~sp~vi~~s~--~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGt----------------------  172 (405)
T KOG1273|consen  117 RKRNKCVATIMEESPVVIDFSD--PKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGT----------------------  172 (405)
T ss_pred             ccCCeEEEEEecCCcEEEEecC--CceeeccCCCccccccccccccccCCCCEEEEec----------------------
Confidence            566777765432   2344443  3444554444443333455567888886555432                      


Q ss_pred             CCCCCCcccCCCCeEEEEeCCCCeEEEecc--cCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeC---C-CCcceeee-
Q 015463          218 NDPSPIKITKDTGRVLKYDPTTKQTTVLLR--NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG---E-KAGNLEAF-  290 (406)
Q Consensus       218 ~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~--~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g---~-~~~~~~~~-  290 (406)
                                ..|.++.||.+|-+...-..  ....-..|.++..++++.+ ++...-|..|+++.   . +.+..+.. 
T Consensus       173 ----------sKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~lii-NtsDRvIR~ye~~di~~~~r~~e~e~~~  241 (405)
T KOG1273|consen  173 ----------SKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLII-NTSDRVIRTYEISDIDDEGRDGEVEPEH  241 (405)
T ss_pred             ----------CcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEE-ecCCceEEEEehhhhcccCccCCcChhH
Confidence                      24889999998765433221  1123345778888887755 45444555576552   1 22222211 


Q ss_pred             --ecC-CCCC-CceEECCCCCEEEEEc
Q 015463          291 --AIL-PGYP-DNVRTNEKGEFWVAIH  313 (406)
Q Consensus       291 --~~l-~g~p-d~i~~d~~G~lwv~~~  313 (406)
                        .++ .-.+ .++.++.+|.+.+|..
T Consensus       242 K~qDvVNk~~Wk~ccfs~dgeYv~a~s  268 (405)
T KOG1273|consen  242 KLQDVVNKLQWKKCCFSGDGEYVCAGS  268 (405)
T ss_pred             HHHHHHhhhhhhheeecCCccEEEecc
Confidence              111 0111 3567888887666654

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=97.74  E-value=0.0028  Score=63.06  Aligned_cols=161  Identities=16%  Similarity=0.254  Sum_probs=94.1

Q ss_pred             CCcceEEEEeCCCCcEEEEeCC-CcEEEEeCCCCeEEEcccc---cCCcccccccceEEcCC-------CCEEEEeCCCc
Q 015463          130 CGRPLGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATE---AEGVPLRFTNDLDIDDE-------GNVYFTDSSTN  198 (406)
Q Consensus       130 ~~~p~gi~~d~~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~---~~~~~~~~~~~l~~d~d-------G~ly~t~~~~~  198 (406)
                      ...|.+|++.+ +|+|||+... +.|+++++.++..+.+...   ........+.+|+++++       +.||++-+...
T Consensus        29 L~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~  107 (454)
T TIGR03606        29 LNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN  107 (454)
T ss_pred             CCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence            35699999999 8999999873 7799998876544332211   11111345678888754       46898853210


Q ss_pred             hhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCC--CC---eEEEecccC-----CCcceEEEecCCCEEEEEe
Q 015463          199 YQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPT--TK---QTTVLLRNL-----QFPNGLSLSKDKSFFVFCE  268 (406)
Q Consensus       199 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~--t~---~~~~~~~~~-----~~~ngi~l~~d~~~l~v~~  268 (406)
                      -. ..                      .....+|.|+..+  +.   ..+++...+     ++...|++.+|+. ||++-
T Consensus       108 ~~-~~----------------------~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYVs~  163 (454)
T TIGR03606       108 GD-KE----------------------LPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYYTI  163 (454)
T ss_pred             CC-CC----------------------ccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEEEE
Confidence            00 00                      0012457666543  11   122333322     3344688999986 77742


Q ss_pred             CC--------------------------------CCeEEEEEeeCCC--------CcceeeeecCCCCCCceEECCCCCE
Q 015463          269 GS--------------------------------VGRLHKYWLIGEK--------AGNLEAFAILPGYPDNVRTNEKGEF  308 (406)
Q Consensus       269 t~--------------------------------~~~i~~~~~~g~~--------~~~~~~~~~l~g~pd~i~~d~~G~l  308 (406)
                      -.                                .+.|+|++.+|.-        ....++++-..--|-++++|++|.|
T Consensus       164 GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~L  243 (454)
T TIGR03606       164 GEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGTL  243 (454)
T ss_pred             CCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCCCE
Confidence            21                                1368888887631        0123566532234788999999999


Q ss_pred             EEEEccC
Q 015463          309 WVAIHCR  315 (406)
Q Consensus       309 wv~~~~~  315 (406)
                      |++.+..
T Consensus       244 w~~e~Gp  250 (454)
T TIGR03606       244 YASEQGP  250 (454)
T ss_pred             EEEecCC
Confidence            9997654

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=97.73  E-value=0.033  Score=55.83  Aligned_cols=137  Identities=14%  Similarity=0.141  Sum_probs=82.5

Q ss_pred             eEEEEeCCCCc-EEEEeCC---CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhcccccc
Q 015463          134 LGLRFDKKTGD-LYIADAY---FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKEN  208 (406)
Q Consensus       134 ~gi~~d~~~g~-L~Vad~~---~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~  208 (406)
                      .+.++++ +|+ |+.+...   ..|+++|.++++.+.+... .+    ......+.+||+ |+++.+.            
T Consensus       207 ~~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~-~g----~~~~~~~SpDG~~l~~~~s~------------  268 (433)
T PRK04922        207 LSPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQRELVASF-RG----INGAPSFSPDGRRLALTLSR------------  268 (433)
T ss_pred             ccccCCC-CCCEEEEEecCCCCcEEEEEECCCCCEEEeccC-CC----CccCceECCCCCEEEEEEeC------------
Confidence            4567777 554 5544332   2499999988876655322 22    123568889995 6665432            


Q ss_pred             ccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCC--CeEEEEEeeCCCCcc
Q 015463          209 IPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGN  286 (406)
Q Consensus       209 ~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~--~~i~~~~~~g~~~~~  286 (406)
                                        .+...|+.+|.++++.+.+..........++++|++.++++....  ..|+.+++.+.+   
T Consensus       269 ------------------~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~---  327 (433)
T PRK04922        269 ------------------DGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS---  327 (433)
T ss_pred             ------------------CCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC---
Confidence                              112469999999888777654433334678999999887765432  358888876432   


Q ss_pred             eeeeecCCCCCCceEECCCCCEE
Q 015463          287 LEAFAILPGYPDNVRTNEKGEFW  309 (406)
Q Consensus       287 ~~~~~~l~g~pd~i~~d~~G~lw  309 (406)
                      .+.+............+++|+..
T Consensus       328 ~~~lt~~g~~~~~~~~SpDG~~I  350 (433)
T PRK04922        328 AERLTFQGNYNARASVSPDGKKI  350 (433)
T ss_pred             eEEeecCCCCccCEEECCCCCEE
Confidence            22221111233356778888743

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=97.73  E-value=0.0094  Score=58.27  Aligned_cols=176  Identities=18%  Similarity=0.226  Sum_probs=99.2

Q ss_pred             CCeeEE-EecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcc-eEEEEeCCCCcEEEEeCCCcEEEE
Q 015463           80 GRGPYT-GVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRP-LGLRFDKKTGDLYIADAYFGLMKV  157 (406)
Q Consensus        80 g~~ly~-g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~gi~~d~~~g~L~Vad~~~gl~~~  157 (406)
                      ++++|+ ...+|.|..+|.+..+.+....                     ..+.+ .++.+.+++..+||+...+.|..+
T Consensus         5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~---------------------~~~~~h~~~~~s~Dgr~~yv~~rdg~vsvi   63 (369)
T PF02239_consen    5 GNLFYVVERGSGSVAVIDGATNKVVARIP---------------------TGGAPHAGLKFSPDGRYLYVANRDGTVSVI   63 (369)
T ss_dssp             GGEEEEEEGGGTEEEEEETTT-SEEEEEE----------------------STTEEEEEE-TT-SSEEEEEETTSEEEEE
T ss_pred             ccEEEEEecCCCEEEEEECCCCeEEEEEc---------------------CCCCceeEEEecCCCCEEEEEcCCCeEEEE
Confidence            344444 4457889999987322222111                     12233 457788833459999877789999


Q ss_pred             eCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEe
Q 015463          158 GPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYD  236 (406)
Q Consensus       158 d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d  236 (406)
                      |+.++++..-.  ..|   ..+.++++.+||+ +|+++..                                .+.+..+|
T Consensus        64 D~~~~~~v~~i--~~G---~~~~~i~~s~DG~~~~v~n~~--------------------------------~~~v~v~D  106 (369)
T PF02239_consen   64 DLATGKVVATI--KVG---GNPRGIAVSPDGKYVYVANYE--------------------------------PGTVSVID  106 (369)
T ss_dssp             ETTSSSEEEEE--E-S---SEEEEEEE--TTTEEEEEEEE--------------------------------TTEEEEEE
T ss_pred             ECCcccEEEEE--ecC---CCcceEEEcCCCCEEEEEecC--------------------------------CCceeEec
Confidence            99887643211  112   3477899999996 5555421                                36799999


Q ss_pred             CCCCeEEEeccc--C----C--CcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCCCCE
Q 015463          237 PTTKQTTVLLRN--L----Q--FPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEF  308 (406)
Q Consensus       237 ~~t~~~~~~~~~--~----~--~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~l  308 (406)
                      .+|.+.......  .    .  ...+|.-++.+...+++-...++||.++....+.-. ....+..-+|.+..+|++|++
T Consensus       107 ~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~-~~~i~~g~~~~D~~~dpdgry  185 (369)
T PF02239_consen  107 AETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK-VTTIKVGRFPHDGGFDPDGRY  185 (369)
T ss_dssp             TTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE-EEEEE--TTEEEEEE-TTSSE
T ss_pred             cccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc-eeeecccccccccccCcccce
Confidence            888765433211  1    1  123666677777666666667899999866432111 122234456888899999996


Q ss_pred             E-EEEcc
Q 015463          309 W-VAIHC  314 (406)
Q Consensus       309 w-v~~~~  314 (406)
                      + ++.+.
T Consensus       186 ~~va~~~  192 (369)
T PF02239_consen  186 FLVAANG  192 (369)
T ss_dssp             EEEEEGG
T ss_pred             eeecccc
Confidence            5 54443

...

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=97.71  E-value=0.0051  Score=55.02  Aligned_cols=184  Identities=15%  Similarity=0.131  Sum_probs=105.1

Q ss_pred             eeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCCCcEEEEeCC
Q 015463           82 GPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPE  160 (406)
Q Consensus        82 ~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~~gl~~~d~~  160 (406)
                      +|.++.+|..|..|... +.             |..        ...+..+..+.+.+.+ ++....+....-|..||..
T Consensus        12 iLvsA~YDhTIRfWqa~tG~-------------C~r--------Tiqh~dsqVNrLeiTp-dk~~LAaa~~qhvRlyD~~   69 (311)
T KOG0315|consen   12 ILVSAGYDHTIRFWQALTGI-------------CSR--------TIQHPDSQVNRLEITP-DKKDLAAAGNQHVRLYDLN   69 (311)
T ss_pred             EEEeccCcceeeeeehhcCe-------------EEE--------EEecCccceeeEEEcC-CcchhhhccCCeeEEEEcc
Confidence            46667888888888754 21             211        1222334456677787 5555555455668888877


Q ss_pred             CCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCC
Q 015463          161 GGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTK  240 (406)
Q Consensus       161 ~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~  240 (406)
                      ++.-..+.+ +++ .-+.+..+.+..||+.-.+.+                                ++|.+-.+|...-
T Consensus        70 S~np~Pv~t-~e~-h~kNVtaVgF~~dgrWMyTgs--------------------------------eDgt~kIWdlR~~  115 (311)
T KOG0315|consen   70 SNNPNPVAT-FEG-HTKNVTAVGFQCDGRWMYTGS--------------------------------EDGTVKIWDLRSL  115 (311)
T ss_pred             CCCCCceeE-Eec-cCCceEEEEEeecCeEEEecC--------------------------------CCceEEEEeccCc
Confidence            664322211 122 123456677777886444432                                2576777777654


Q ss_pred             eEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCCCCEEEEEccCCcchh
Q 015463          241 QTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYS  320 (406)
Q Consensus       241 ~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~lwv~~~~~~~~~~  320 (406)
                      +...........|.|.+.|++.-|++++ ..+.|+.+++... .-..+..-+..-.-..+.+++||...+|.++...-+.
T Consensus       116 ~~qR~~~~~spVn~vvlhpnQteLis~d-qsg~irvWDl~~~-~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyv  193 (311)
T KOG0315|consen  116 SCQRNYQHNSPVNTVVLHPNQTELISGD-QSGNIRVWDLGEN-SCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYV  193 (311)
T ss_pred             ccchhccCCCCcceEEecCCcceEEeec-CCCcEEEEEccCC-ccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEE
Confidence            4333333334558899999887776665 4688999998632 1111222111111245677888988888776655555


Q ss_pred             hhh
Q 015463          321 HLM  323 (406)
Q Consensus       321 ~~~  323 (406)
                      +.+
T Consensus       194 W~l  196 (311)
T KOG0315|consen  194 WRL  196 (311)
T ss_pred             EEc
Confidence            433

>PRK02889 tolB translocation protein TolB; Provisional

Probab=97.70  E-value=0.052  Score=54.28  Aligned_cols=136  Identities=11%  Similarity=0.095  Sum_probs=79.3

Q ss_pred             eEEEEeCCCC-cEEEEeCC---CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhcccccc
Q 015463          134 LGLRFDKKTG-DLYIADAY---FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKEN  208 (406)
Q Consensus       134 ~gi~~d~~~g-~L~Vad~~---~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~  208 (406)
                      ...++++ +| .|+.+...   ..|+.+|..+++.+.+... .+    .....++.+||+ |+++...            
T Consensus       199 ~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~-~g----~~~~~~~SPDG~~la~~~~~------------  260 (427)
T PRK02889        199 ISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRVVANF-KG----SNSAPAWSPDGRTLAVALSR------------  260 (427)
T ss_pred             ccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEEeecC-CC----CccceEECCCCCEEEEEEcc------------
Confidence            3567888 55 45444432   2499999998876655322 12    223568889995 6665421            


Q ss_pred             ccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCC--CCeEEEEEeeCCCCcc
Q 015463          209 IPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS--VGRLHKYWLIGEKAGN  286 (406)
Q Consensus       209 ~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~--~~~i~~~~~~g~~~~~  286 (406)
                                        .+.-.||.+|.+++..+.+..........++++|++.++++...  ...|+.+++.+..   
T Consensus       261 ------------------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~---  319 (427)
T PRK02889        261 ------------------DGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA---  319 (427)
T ss_pred             ------------------CCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc---
Confidence                              11246999998877766664433233457799999988766432  3367777765432   


Q ss_pred             eeeeecCCCCCCceEECCCCCE
Q 015463          287 LEAFAILPGYPDNVRTNEKGEF  308 (406)
Q Consensus       287 ~~~~~~l~g~pd~i~~d~~G~l  308 (406)
                      .+......+......++++|+.
T Consensus       320 ~~~lt~~g~~~~~~~~SpDG~~  341 (427)
T PRK02889        320 AQRVTFTGSYNTSPRISPDGKL  341 (427)
T ss_pred             eEEEecCCCCcCceEECCCCCE
Confidence            2222111122234567888874

>PRK04792 tolB translocation protein TolB; Provisional

Probab=97.68  E-value=0.053  Score=54.57  Aligned_cols=136  Identities=12%  Similarity=0.073  Sum_probs=81.0

Q ss_pred             EEEEeCCCCc-EEEE-eCC--CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccc
Q 015463          135 GLRFDKKTGD-LYIA-DAY--FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENI  209 (406)
Q Consensus       135 gi~~d~~~g~-L~Va-d~~--~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~  209 (406)
                      ...+++ +|+ |+.+ ...  ..|+.+|..+++.+.+... .+    .....++.+||+ |+++...             
T Consensus       222 ~p~wSP-DG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~-~g----~~~~~~wSPDG~~La~~~~~-------------  282 (448)
T PRK04792        222 SPAWSP-DGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF-PG----INGAPRFSPDGKKLALVLSK-------------  282 (448)
T ss_pred             CceECC-CCCEEEEEEecCCCcEEEEEECCCCCeEEecCC-CC----CcCCeeECCCCCEEEEEEeC-------------
Confidence            457888 554 4433 322  2599999988876655322 11    123567889996 6665321             


Q ss_pred             cccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCC--CCeEEEEEeeCCCCcce
Q 015463          210 PLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS--VGRLHKYWLIGEKAGNL  287 (406)
Q Consensus       210 ~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~--~~~i~~~~~~g~~~~~~  287 (406)
                                       .+...|+.+|.++++.+.+..........++++|++.++++...  ...|+++++++.+   .
T Consensus       283 -----------------~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~---~  342 (448)
T PRK04792        283 -----------------DGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK---V  342 (448)
T ss_pred             -----------------CCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC---E
Confidence                             11235999999988887765543344567899999988776543  2468888876432   2


Q ss_pred             eeeecCCCCCCceEECCCCCEE
Q 015463          288 EAFAILPGYPDNVRTNEKGEFW  309 (406)
Q Consensus       288 ~~~~~l~g~pd~i~~d~~G~lw  309 (406)
                      +.+............++||+..
T Consensus       343 ~~Lt~~g~~~~~~~~SpDG~~l  364 (448)
T PRK04792        343 SRLTFEGEQNLGGSITPDGRSM  364 (448)
T ss_pred             EEEecCCCCCcCeeECCCCCEE
Confidence            2221111112235677888743

>PTZ00421 coronin; Provisional

Probab=97.65  E-value=0.037  Score=56.21  Aligned_cols=167  Identities=16%  Similarity=0.098  Sum_probs=97.1

Q ss_pred             eccCcccCcceEEEcC-CCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEe
Q 015463           63 KFLNQIQGPESMAFDP-LGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFD  139 (406)
Q Consensus        63 ~~~~~~~gpe~i~~d~-~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d  139 (406)
                      ++.+.-....++++++ +++.|.+++.||.|..|+..  ....-  .. .  ...          ...........+++.
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~--~~-~--~l~----------~L~gH~~~V~~l~f~  134 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN--IS-D--PIV----------HLQGHTKKVGIVSFH  134 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccc--cC-c--ceE----------EecCCCCcEEEEEeC
Confidence            3344434457889988 77778999999999999854  11000  00 0  000          011112445678898


Q ss_pred             CCCCcE-EEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCC
Q 015463          140 KKTGDL-YIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLN  218 (406)
Q Consensus       140 ~~~g~L-~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~  218 (406)
                      +..+++ ..+...+.|..+|.++++........    ...+.++++.++|.+.++.+.                      
T Consensus       135 P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h----~~~V~sla~spdG~lLatgs~----------------------  188 (493)
T PTZ00421        135 PSAMNVLASAGADMVVNVWDVERGKAVEVIKCH----SDQITSLEWNLDGSLLCTTSK----------------------  188 (493)
T ss_pred             cCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCC----CCceEEEEEECCCCEEEEecC----------------------
Confidence            833344 44555566889998877543221111    124778999999988777543                      


Q ss_pred             CCCCCcccCCCCeEEEEeCCCCeEEEecccCCC--cceEEEecCCCEEEEEeC---CCCeEEEEEee
Q 015463          219 DPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQF--PNGLSLSKDKSFFVFCEG---SVGRLHKYWLI  280 (406)
Q Consensus       219 ~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~--~ngi~l~~d~~~l~v~~t---~~~~i~~~~~~  280 (406)
                                ++.|..||+.+++...-......  ...+.+.+++..++.+..   ..+.|..+++.
T Consensus       189 ----------Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr  245 (493)
T PTZ00421        189 ----------DKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR  245 (493)
T ss_pred             ----------CCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence                      47799999988765332222221  234556677766654432   23567777764

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.65  E-value=0.0071  Score=58.32  Aligned_cols=116  Identities=10%  Similarity=0.023  Sum_probs=73.4

Q ss_pred             CCcEEEEeCCCcEEEEeCCCCeEEEccc-----cc---CCcccccccceEEcCCC-CEEEEeCCCchhhhcccccccccc
Q 015463          142 TGDLYIADAYFGLMKVGPEGGLATSLAT-----EA---EGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRQMQKENIPLQ  212 (406)
Q Consensus       142 ~g~L~Vad~~~gl~~~d~~~~~~~~l~~-----~~---~~~~~~~~~~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~  212 (406)
                      +..+||+.. +.|+.+|..+........     ..   ++-......-++++++| ++|+.......+  .+        
T Consensus       206 g~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~--th--------  274 (352)
T TIGR02658       206 GRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKW--TH--------  274 (352)
T ss_pred             CcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccc--cc--------
Confidence            456777765 779999965543322211     00   11111122238999886 788854221000  00        


Q ss_pred             ccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCC-EEEEEeCCCCeEEEEEeeC
Q 015463          213 LCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKS-FFVFCEGSVGRLHKYWLIG  281 (406)
Q Consensus       213 ~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~-~l~v~~t~~~~i~~~~~~g  281 (406)
                                   ..+.+.|..+|.++++......--..+.++++++|++ .+|++....+.|..++...
T Consensus       275 -------------k~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t  331 (352)
T TIGR02658       275 -------------KTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAET  331 (352)
T ss_pred             -------------cCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence                         1234579999999998776655556889999999999 8888876677899998653

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.65  E-value=0.0013  Score=63.39  Aligned_cols=159  Identities=19%  Similarity=0.255  Sum_probs=91.9

Q ss_pred             CcceEEEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEccc--ccCCcccccccceEEcCC----CCEEEEeCCCchhhhcc
Q 015463          131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLAT--EAEGVPLRFTNDLDIDDE----GNVYFTDSSTNYQRRQM  204 (406)
Q Consensus       131 ~~p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~--~~~~~~~~~~~~l~~d~d----G~ly~t~~~~~~~~~~~  204 (406)
                      .+|.+|++.+ +|+|||++..+.|++++.++.....+..  .........+.+++++++    +.+|+..+....   ..
T Consensus         2 ~~P~~~a~~p-dG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~---~~   77 (331)
T PF07995_consen    2 NNPRSMAFLP-DGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADE---DG   77 (331)
T ss_dssp             SSEEEEEEET-TSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-T---SS
T ss_pred             CCceEEEEeC-CCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccC---CC
Confidence            3589999999 7999999987779999855443122221  111122345678999984    899998642100   00


Q ss_pred             ccccccccccccCCCCCCCcccCCCCeEEEEeCCCC--e---EEEecc-------cCCCcceEEEecCCCEEEEEeCC--
Q 015463          205 QKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTK--Q---TTVLLR-------NLQFPNGLSLSKDKSFFVFCEGS--  270 (406)
Q Consensus       205 ~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~--~---~~~~~~-------~~~~~ngi~l~~d~~~l~v~~t~--  270 (406)
                                           .....+|.++..+.+  .   .+.+..       ..+...++++.||+ .||++--.  
T Consensus        78 ---------------------~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~  135 (331)
T PF07995_consen   78 ---------------------GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGG  135 (331)
T ss_dssp             ---------------------SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TT
T ss_pred             ---------------------CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCC
Confidence                                 011235666655433  1   222322       22334579999999 68887321  


Q ss_pred             -----------CCeEEEEEeeCCC----------CcceeeeecCCCCCCceEECCC-CCEEEEEccC
Q 015463          271 -----------VGRLHKYWLIGEK----------AGNLEAFAILPGYPDNVRTNEK-GEFWVAIHCR  315 (406)
Q Consensus       271 -----------~~~i~~~~~~g~~----------~~~~~~~~~l~g~pd~i~~d~~-G~lwv~~~~~  315 (406)
                                 .+.|+|++.+|.-          ....++|+..--.|-++++|+. |+||++.+..
T Consensus       136 ~~~~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~  202 (331)
T PF07995_consen  136 NDDNAQDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGP  202 (331)
T ss_dssp             TGGGGCSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-S
T ss_pred             CcccccccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCC
Confidence                       3679999877631          1134555532223667899998 9999997643

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.64  E-value=0.0059  Score=57.13  Aligned_cols=188  Identities=19%  Similarity=0.189  Sum_probs=104.1

Q ss_pred             EEEcCCCCeeEEE-----ecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC-cEE
Q 015463           74 MAFDPLGRGPYTG-----VADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG-DLY  146 (406)
Q Consensus        74 i~~d~~g~~ly~g-----~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g-~L~  146 (406)
                      -++++||+.||+.     +..|.|-.+|.. .++.+....                    ..+-.|+-|.+.+ +| +|.
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~--------------------s~GIGPHel~l~p-DG~tLv  114 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFP--------------------SHGIGPHELLLMP-DGETLV  114 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEec--------------------CCCcChhhEEEcC-CCCEEE
Confidence            3567899988875     334888888876 555543222                    2234588899998 56 899


Q ss_pred             EEeCC------C------------cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccc
Q 015463          147 IADAY------F------------GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKEN  208 (406)
Q Consensus       147 Vad~~------~------------gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~  208 (406)
                      ||..+      .            .|..+|..+|++..-..........++..|+++.+|.+|++-...+-.        
T Consensus       115 VANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~--------  186 (305)
T PF07433_consen  115 VANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDP--------  186 (305)
T ss_pred             EEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCC--------
Confidence            98642      0            255555555543221111112233468899999999999997431100        


Q ss_pred             ccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec------ccC-CCcceEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463          209 IPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL------RNL-QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  281 (406)
Q Consensus       209 ~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~------~~~-~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g  281 (406)
                                       ....--|..++.. +..+.+.      ..+ .+.-.|+++.|+..+.++....+++..++...
T Consensus       187 -----------------~~~~PLva~~~~g-~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t  248 (305)
T PF07433_consen  187 -----------------GDAPPLVALHRRG-GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT  248 (305)
T ss_pred             -----------------CccCCeEEEEcCC-CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC
Confidence                             0001113333332 2222221      111 23346999999988888877777777776542


Q ss_pred             CCCcceeeeecCCCCCC--ceEECCCCCEEEEEccC
Q 015463          282 EKAGNLEAFAILPGYPD--NVRTNEKGEFWVAIHCR  315 (406)
Q Consensus       282 ~~~~~~~~~~~l~g~pd--~i~~d~~G~lwv~~~~~  315 (406)
                         +.   +....-+||  +++...+| +.++...+
T Consensus       249 ---g~---~~~~~~l~D~cGva~~~~~-f~~ssG~G  277 (305)
T PF07433_consen  249 ---GR---LLGSVPLPDACGVAPTDDG-FLVSSGQG  277 (305)
T ss_pred             ---CC---EeeccccCceeeeeecCCc-eEEeCCCc
Confidence               22   221122355  45665555 55555444

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.61  E-value=0.0068  Score=55.60  Aligned_cols=161  Identities=18%  Similarity=0.193  Sum_probs=82.5

Q ss_pred             cCcccCcceEEEcCCCCeeEEEe-cCCEEEEEeCC---c---eeEEEeecCCCccccCCCCCcccccccCC-cCCcceEE
Q 015463           65 LNQIQGPESMAFDPLGRGPYTGV-ADGRILFWDGL---K---WTDFAFTSNNRSELCNPKPIATSYLKNEH-ICGRPLGL  136 (406)
Q Consensus        65 ~~~~~gpe~i~~d~~g~~ly~g~-~~g~I~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~gi  136 (406)
                      ..++.-||+|++-.+|. +.+.. .+++|+.++.+   +   ...+....-+                ... .....-||
T Consensus        61 l~g~~D~EgI~y~g~~~-~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~----------------~~~~~N~G~EGl  123 (248)
T PF06977_consen   61 LDGFGDYEGITYLGNGR-YVLSEERDQRLYIFTIDDDTTSLDRADVQKISLG----------------FPNKGNKGFEGL  123 (248)
T ss_dssp             -SS-SSEEEEEE-STTE-EEEEETTTTEEEEEEE----TT--EEEEEEEE-------------------S---SS--EEE
T ss_pred             CCCCCCceeEEEECCCE-EEEEEcCCCcEEEEEEeccccccchhhceEEecc----------------cccCCCcceEEE
Confidence            34466799999986665 44444 36888887652   1   1111111000                000 01225699


Q ss_pred             EEeCCCCcEEEEeCC--CcEEEEeC--CCCeEEEcc--ccc-CCcccccccceEEcC-CCCEEEEeCCCchhhhcccccc
Q 015463          137 RFDKKTGDLYIADAY--FGLMKVGP--EGGLATSLA--TEA-EGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKEN  208 (406)
Q Consensus       137 ~~d~~~g~L~Vad~~--~gl~~~d~--~~~~~~~l~--~~~-~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~  208 (406)
                      ++|+.+++|+++...  .+|+.++.  .........  ... .......+.++.+++ .|++|+-+..            
T Consensus       124 a~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~e------------  191 (248)
T PF06977_consen  124 AYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDE------------  191 (248)
T ss_dssp             EEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETT------------
T ss_pred             EEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECC------------
Confidence            999977899999765  46888875  222222111  101 122334578899887 5788887643            


Q ss_pred             ccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEE-e--cc-------cCCCcceEEEecCCCEEEEEeCCCCeEEEE
Q 015463          209 IPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTV-L--LR-------NLQFPNGLSLSKDKSFFVFCEGSVGRLHKY  277 (406)
Q Consensus       209 ~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~-~--~~-------~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~  277 (406)
                                          ..+|+.+|.+ |+... +  ..       .+..|.|||+++||+ +|++.. .+..+++
T Consensus       192 --------------------s~~l~~~d~~-G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsE-pNlfy~f  247 (248)
T PF06977_consen  192 --------------------SRLLLELDRQ-GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSE-PNLFYRF  247 (248)
T ss_dssp             --------------------TTEEEEE-TT---EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEET-TTEEEEE
T ss_pred             --------------------CCeEEEECCC-CCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEcC-CceEEEe
Confidence                                2578888876 44322 2  22       245789999999985 666654 5688776

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=0.0072  Score=55.67  Aligned_cols=160  Identities=16%  Similarity=0.228  Sum_probs=98.5

Q ss_pred             eeccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC
Q 015463           62 IKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK  141 (406)
Q Consensus        62 ~~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~  141 (406)
                      +.|.|.-.-.-+|.+.|-++.+..++.|..|+.||...            ..|.+         .-+..++|. .++|+ 
T Consensus        94 RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~------------~~cqg---------~l~~~~~pi-~AfDp-  150 (311)
T KOG1446|consen   94 RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRV------------KKCQG---------LLNLSGRPI-AAFDP-  150 (311)
T ss_pred             EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecC------------CCCce---------EEecCCCcc-eeECC-
Confidence            45566666667888888777566677788888888641            11221         112234454 58998 


Q ss_pred             CCcEEEEeCCC-cEEEEeCCC---CeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhcccccccccccccc
Q 015463          142 TGDLYIADAYF-GLMKVGPEG---GLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSS  216 (406)
Q Consensus       142 ~g~L~Vad~~~-gl~~~d~~~---~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e  216 (406)
                      +|-++.+.... .|..+|.+.   |-++.+.-.  .......++|.+.+||. |.+++..                    
T Consensus       151 ~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~--~~~~~ew~~l~FS~dGK~iLlsT~~--------------------  208 (311)
T KOG1446|consen  151 EGLIFALANGSELIKLYDLRSFDKGPFTTFSIT--DNDEAEWTDLEFSPDGKSILLSTNA--------------------  208 (311)
T ss_pred             CCcEEEEecCCCeEEEEEecccCCCCceeEccC--CCCccceeeeEEcCCCCEEEEEeCC--------------------
Confidence            77766655543 677777642   223332211  12234567889999995 5566542                    


Q ss_pred             CCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCC----cceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          217 LNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQF----PNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       217 ~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~----~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                                   +-++.+|.-+|.+..-......    +-.-+++||+++++..+ ..++|..|+++
T Consensus       209 -------------s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs-~dg~i~vw~~~  262 (311)
T KOG1446|consen  209 -------------SFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGS-DDGTIHVWNLE  262 (311)
T ss_pred             -------------CcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEec-CCCcEEEEEcC
Confidence                         4577777777765443333333    33667889999887765 46899999875

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=97.57  E-value=0.0054  Score=59.48  Aligned_cols=194  Identities=12%  Similarity=0.156  Sum_probs=121.7

Q ss_pred             cCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC
Q 015463           65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (406)
Q Consensus        65 ~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g  143 (406)
                      .+.-....++.+..+|..+.+++.|..|..||.+ +.......                      ..-.|..+.+.+++.
T Consensus       255 ~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~----------------------~~~~~~cvkf~pd~~  312 (503)
T KOG0282|consen  255 KGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH----------------------LDKVPTCVKFHPDNQ  312 (503)
T ss_pred             hcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe----------------------cCCCceeeecCCCCC
Confidence            3444455778888888888888999988888877 32222111                      123356677887553


Q ss_pred             cEE-EEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCC
Q 015463          144 DLY-IADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSP  222 (406)
Q Consensus       144 ~L~-Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  222 (406)
                      +++ ++...+.|..+|..++++..    ..+..+..++++.+-++|.-+++++.                          
T Consensus       313 n~fl~G~sd~ki~~wDiRs~kvvq----eYd~hLg~i~~i~F~~~g~rFissSD--------------------------  362 (503)
T KOG0282|consen  313 NIFLVGGSDKKIRQWDIRSGKVVQ----EYDRHLGAILDITFVDEGRRFISSSD--------------------------  362 (503)
T ss_pred             cEEEEecCCCcEEEEeccchHHHH----HHHhhhhheeeeEEccCCceEeeecc--------------------------
Confidence            554 55555789999998886321    12234556888999889988888753                          


Q ss_pred             CcccCCCCeEEEEeCCCCeEEEec--ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCC-CCcceeeee--cCCCCC
Q 015463          223 IKITKDTGRVLKYDPTTKQTTVLL--RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE-KAGNLEAFA--ILPGYP  297 (406)
Q Consensus       223 ~~~~~~~g~l~~~d~~t~~~~~~~--~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~-~~~~~~~~~--~l~g~p  297 (406)
                            .+.+..++-.......+.  ......-.+++.|.++. +.+++-.++|..|.+.-+ +....+.|.  ..+|++
T Consensus       363 ------dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~-~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys  435 (503)
T KOG0282|consen  363 ------DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKW-FAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS  435 (503)
T ss_pred             ------CccEEEEEcCCCccchhhcchhhccCcceecCCCCCe-ehhhccCceEEEEecccccccCHhhhhcceeccCce
Confidence                  234555554433222111  11122236888888874 467777788888876532 223334454  257888


Q ss_pred             CceEECCCCCEEEEEccCCc
Q 015463          298 DNVRTNEKGEFWVAIHCRRS  317 (406)
Q Consensus       298 d~i~~d~~G~lwv~~~~~~~  317 (406)
                      -.+.+++||++.++..+...
T Consensus       436 ~~v~fSpDG~~l~SGdsdG~  455 (503)
T KOG0282|consen  436 CQVDFSPDGRTLCSGDSDGK  455 (503)
T ss_pred             eeEEEcCCCCeEEeecCCcc
Confidence            89999999998877654433

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.54  E-value=0.014  Score=58.98  Aligned_cols=158  Identities=16%  Similarity=0.175  Sum_probs=104.8

Q ss_pred             cCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC
Q 015463           65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (406)
Q Consensus        65 ~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g  143 (406)
                      .+.-.+..++++.++|..+.+++.|+.|..|+.. ....+....                    ........++|.+ +|
T Consensus       200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~--------------------gH~~~v~~~~f~p-~g  258 (456)
T KOG0266|consen  200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLK--------------------GHSTYVTSVAFSP-DG  258 (456)
T ss_pred             cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEec--------------------CCCCceEEEEecC-CC
Confidence            4555677899999999988889999999999873 211111110                    0123357899999 66


Q ss_pred             cEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCC
Q 015463          144 DLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSP  222 (406)
Q Consensus       144 ~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  222 (406)
                      ++.+.... .-+..+|.++++........    ...++.+++.++|++.++.+.                          
T Consensus       259 ~~i~Sgs~D~tvriWd~~~~~~~~~l~~h----s~~is~~~f~~d~~~l~s~s~--------------------------  308 (456)
T KOG0266|consen  259 NLLVSGSDDGTVRIWDVRTGECVRKLKGH----SDGISGLAFSPDGNLLVSASY--------------------------  308 (456)
T ss_pred             CEEEEecCCCcEEEEeccCCeEEEeeecc----CCceEEEEECCCCCEEEEcCC--------------------------
Confidence            66665544 56888999886544322211    124778899999988887642                          


Q ss_pred             CcccCCCCeEEEEeCCCCeEE--EecccCCCc---ceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          223 IKITKDTGRVLKYDPTTKQTT--VLLRNLQFP---NGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       223 ~~~~~~~g~l~~~d~~t~~~~--~~~~~~~~~---ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                            +|.+..||..+++..  ....+...+   .-+++++++++++.... .+.+..+++.
T Consensus       309 ------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~-d~~~~~w~l~  364 (456)
T KOG0266|consen  309 ------DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL-DRTLKLWDLR  364 (456)
T ss_pred             ------CccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC-CCeEEEEEcc
Confidence                  478999999998832  333333333   67889999998877643 4455555554

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=97.51  E-value=0.0012  Score=67.26  Aligned_cols=127  Identities=17%  Similarity=0.328  Sum_probs=78.8

Q ss_pred             CCcceEEEEeCCCCcEEEEeCC-C-------------------cEEEEeCCCC-------eEEEccccc-----------
Q 015463          130 CGRPLGLRFDKKTGDLYIADAY-F-------------------GLMKVGPEGG-------LATSLATEA-----------  171 (406)
Q Consensus       130 ~~~p~gi~~d~~~g~L~Vad~~-~-------------------gl~~~d~~~~-------~~~~l~~~~-----------  171 (406)
                      ..||-+|.+++.++.+|++.+. .                   .|++++++++       ....+....           
T Consensus       349 f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~~  428 (524)
T PF05787_consen  349 FDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGSN  428 (524)
T ss_pred             ccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccccC
Confidence            5789999999988999998643 1                   4999998766       333332211           


Q ss_pred             --CCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCc-ccCCCC-eEEEEeCCCCeEEEecc
Q 015463          172 --EGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIK-ITKDTG-RVLKYDPTTKQTTVLLR  247 (406)
Q Consensus       172 --~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~-~~~~~g-~l~~~d~~t~~~~~~~~  247 (406)
                        ....+..|..|++|++|+|||.+........           +......+.++ +....| .+..+++.+++++.+..
T Consensus       429 ~~~~~~f~sPDNL~~d~~G~LwI~eD~~~~~~~-----------l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~  497 (524)
T PF05787_consen  429 KCDDNGFASPDNLAFDPDGNLWIQEDGGGSNNN-----------LPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLV  497 (524)
T ss_pred             cccCCCcCCCCceEECCCCCEEEEeCCCCCCcc-----------cccccccCceeeeeecccceeeeccccccceeeecc
Confidence              1235778999999999999999754221100           00000000000 000111 15667788888888764


Q ss_pred             cC--CCcceEEEecCCCEEEEE
Q 015463          248 NL--QFPNGLSLSKDKSFFVFC  267 (406)
Q Consensus       248 ~~--~~~ngi~l~~d~~~l~v~  267 (406)
                      .-  ....|++++||++++|+.
T Consensus       498 ~P~gaE~tG~~fspDg~tlFvn  519 (524)
T PF05787_consen  498 GPNGAEITGPCFSPDGRTLFVN  519 (524)
T ss_pred             CCCCcccccceECCCCCEEEEE
Confidence            43  334689999999999885

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=97.49  E-value=0.063  Score=52.73  Aligned_cols=99  Identities=15%  Similarity=0.155  Sum_probs=61.2

Q ss_pred             CcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEE
Q 015463           70 GPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~V  147 (406)
                      .--++++.++|+ ..||..+|.|..|+..  +++.-..                     .+ .+...++..-. +|.|.-
T Consensus       248 ~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~---------------------aH-~ggv~~L~~lr-~GtllS  303 (626)
T KOG2106|consen  248 FVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVH---------------------AH-DGGVFSLCMLR-DGTLLS  303 (626)
T ss_pred             EEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEee---------------------ec-CCceEEEEEec-CccEee
Confidence            446888989998 8999999999999886  2222111                     11 34467777777 888887


Q ss_pred             EeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCC
Q 015463          148 ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSS  196 (406)
Q Consensus       148 ad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~  196 (406)
                      +.-++.|..+|-.   .+.+....-...+..+..++... +.||++++.
T Consensus       304 GgKDRki~~Wd~~---y~k~r~~elPe~~G~iRtv~e~~-~di~vGTtr  348 (626)
T KOG2106|consen  304 GGKDRKIILWDDN---YRKLRETELPEQFGPIRTVAEGK-GDILVGTTR  348 (626)
T ss_pred             cCccceEEecccc---ccccccccCchhcCCeeEEecCC-CcEEEeecc
Confidence            5555678888733   22222111111234566666554 349999864

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.49  E-value=0.0078  Score=61.46  Aligned_cols=91  Identities=13%  Similarity=0.081  Sum_probs=63.9

Q ss_pred             CeEEEEeCCC-----CeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCC------Cc-ceeeeec--CCC
Q 015463          230 GRVLKYDPTT-----KQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEK------AG-NLEAFAI--LPG  295 (406)
Q Consensus       230 g~l~~~d~~t-----~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~------~~-~~~~~~~--l~g  295 (406)
                      ++|-.+|..+     .++..+..--..|.|++++|||+.+|++......+..+++..-+      .. +..+..+  +.-
T Consensus       296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl  375 (635)
T PRK02888        296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL  375 (635)
T ss_pred             CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC
Confidence            5688899887     34555555567899999999999999998888899999976421      11 0112222  222


Q ss_pred             CCCceEECCCCCEEEEEccCCcchh
Q 015463          296 YPDNVRTNEKGEFWVAIHCRRSLYS  320 (406)
Q Consensus       296 ~pd~i~~d~~G~lwv~~~~~~~~~~  320 (406)
                      -|--.++|.+|+.|+++.-...+..
T Consensus       376 GPLHTaFDg~G~aytslf~dsqv~k  400 (635)
T PRK02888        376 GPLHTAFDGRGNAYTTLFLDSQIVK  400 (635)
T ss_pred             CcceEEECCCCCEEEeEeecceeEE
Confidence            3778899999999999875544433

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=97.46  E-value=0.036  Score=53.73  Aligned_cols=183  Identities=17%  Similarity=0.208  Sum_probs=107.5

Q ss_pred             CcceEEEcCCCCeeEEEecCCEE--EEEeCC---ceeEEEeecCCCccccCCCCCcccccccCCcCCcce-EEEEeCCCC
Q 015463           70 GPESMAFDPLGRGPYTGVADGRI--LFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPL-GLRFDKKTG  143 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~~g~I--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-gi~~d~~~g  143 (406)
                      +..++.+-+.-.++.++..++.+  +.+|.+   .++.+..                        ...|. ..+|.+ +|
T Consensus       215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l------------------------~~fPi~~a~f~p-~G  269 (514)
T KOG2055|consen  215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHL------------------------EKFPIQKAEFAP-NG  269 (514)
T ss_pred             CceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeee------------------------ccCccceeeecC-CC
Confidence            34677887777778888788755  444543   1221110                        12233 345666 66


Q ss_pred             c--EEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCC
Q 015463          144 D--LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPS  221 (406)
Q Consensus       144 ~--L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~  221 (406)
                      .  ++.+....=+|.||..+.++..+... .|.+-.+...+.+.+++++......                         
T Consensus       270 ~~~i~~s~rrky~ysyDle~ak~~k~~~~-~g~e~~~~e~FeVShd~~fia~~G~-------------------------  323 (514)
T KOG2055|consen  270 HSVIFTSGRRKYLYSYDLETAKVTKLKPP-YGVEEKSMERFEVSHDSNFIAIAGN-------------------------  323 (514)
T ss_pred             ceEEEecccceEEEEeeccccccccccCC-CCcccchhheeEecCCCCeEEEccc-------------------------
Confidence            5  33333334488999998887765432 3434456777888888885554322                         


Q ss_pred             CCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCC-CCCce
Q 015463          222 PIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPG-YPDNV  300 (406)
Q Consensus       222 ~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g-~pd~i  300 (406)
                             .|-|+.+...|+++..-..--....+++++.|++.+|++.. .+.||.+++...  .-...|.+-.+ .-..+
T Consensus       324 -------~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~-~GeV~v~nl~~~--~~~~rf~D~G~v~gts~  393 (514)
T KOG2055|consen  324 -------NGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGG-TGEVYVWNLRQN--SCLHRFVDDGSVHGTSL  393 (514)
T ss_pred             -------CceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcC-CceEEEEecCCc--ceEEEEeecCccceeee
Confidence                   36688887777764322211123457889999998888754 469999998643  22233443222 12346


Q ss_pred             EECCCCCEEEEEcc
Q 015463          301 RTNEKGEFWVAIHC  314 (406)
Q Consensus       301 ~~d~~G~lwv~~~~  314 (406)
                      +.+.+|. |+|+.+
T Consensus       394 ~~S~ng~-ylA~GS  406 (514)
T KOG2055|consen  394 CISLNGS-YLATGS  406 (514)
T ss_pred             eecCCCc-eEEecc
Confidence            6677887 555543

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=97.45  E-value=0.014  Score=59.75  Aligned_cols=160  Identities=17%  Similarity=0.206  Sum_probs=104.5

Q ss_pred             cCcccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc
Q 015463           65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (406)
Q Consensus        65 ~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~  144 (406)
                      ...-.+-..+.+...|+.++..+-||++.-||....+-|......                 ++  -.-..+++|+ .|.
T Consensus       389 teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P-----------------~p--~QfscvavD~-sGe  448 (893)
T KOG0291|consen  389 TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP-----------------EP--IQFSCVAVDP-SGE  448 (893)
T ss_pred             ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCC-----------------Cc--eeeeEEEEcC-CCC
Confidence            344456677788888998999999999999998743333221100                 00  0123578898 788


Q ss_pred             EEEEeCC--CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCC
Q 015463          145 LYIADAY--FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSP  222 (406)
Q Consensus       145 L~Vad~~--~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  222 (406)
                      |.+|.+.  ..|+.++.++|+........+|+    +.++.++++|.+.++.+-.                         
T Consensus       449 lV~AG~~d~F~IfvWS~qTGqllDiLsGHEgP----Vs~l~f~~~~~~LaS~SWD-------------------------  499 (893)
T KOG0291|consen  449 LVCAGAQDSFEIFVWSVQTGQLLDILSGHEGP----VSGLSFSPDGSLLASGSWD-------------------------  499 (893)
T ss_pred             EEEeeccceEEEEEEEeecCeeeehhcCCCCc----ceeeEEccccCeEEecccc-------------------------
Confidence            8777654  46999999999876655554443    5678999999887775421                         


Q ss_pred             CcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          223 IKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       223 ~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                           .+=+++-.-...++++.+. --..+-++++.|||+-+.|+. -.+.|..|+.+
T Consensus       500 -----kTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaT-ldgqItf~d~~  550 (893)
T KOG0291|consen  500 -----KTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVAT-LDGQITFFDIK  550 (893)
T ss_pred             -----ceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEE-ecceEEEEEhh
Confidence                 0123433323334555543 123456789999999998875 45777777765

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.44  E-value=0.11  Score=52.53  Aligned_cols=184  Identities=17%  Similarity=0.211  Sum_probs=108.8

Q ss_pred             ceEEEcCCCCeeEEEecCCEEEEEeCCceeE-EEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeC
Q 015463           72 ESMAFDPLGRGPYTGVADGRILFWDGLKWTD-FAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA  150 (406)
Q Consensus        72 e~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~  150 (406)
                      -++.+.++|+.+..++.++.+..++...... ...                   ..........+++|.+ ++...++.+
T Consensus       163 ~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~-------------------~l~~h~~~v~~~~fs~-d~~~l~s~s  222 (456)
T KOG0266|consen  163 TCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLR-------------------ELSGHTRGVSDVAFSP-DGSYLLSGS  222 (456)
T ss_pred             EEEEEcCCCCeEEEccCCCcEEEeecccccchhhc-------------------cccccccceeeeEECC-CCcEEEEec
Confidence            4456778998766677777666665531110 000                   0000112356789998 776555544


Q ss_pred             C-CcEEEEeC-CCCe-EEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463          151 Y-FGLMKVGP-EGGL-ATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK  227 (406)
Q Consensus       151 ~-~gl~~~d~-~~~~-~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  227 (406)
                      . ..|..+|. +.+. ++.+...     ...++++++.++|++.++.+.                               
T Consensus       223 ~D~tiriwd~~~~~~~~~~l~gH-----~~~v~~~~f~p~g~~i~Sgs~-------------------------------  266 (456)
T KOG0266|consen  223 DDKTLRIWDLKDDGRNLKTLKGH-----STYVTSVAFSPDGNLLVSGSD-------------------------------  266 (456)
T ss_pred             CCceEEEeeccCCCeEEEEecCC-----CCceEEEEecCCCCEEEEecC-------------------------------
Confidence            3 56778887 3322 2333211     245789999999988887643                               


Q ss_pred             CCCeEEEEeCCCCeEEEecccC-CCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecC--CCCCCceEECC
Q 015463          228 DTGRVLKYDPTTKQTTVLLRNL-QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAIL--PGYPDNVRTNE  304 (406)
Q Consensus       228 ~~g~l~~~d~~t~~~~~~~~~~-~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l--~g~pd~i~~d~  304 (406)
                       ++.+..+|..+++......+. ...+++++++|+..++.+ ...+.|..|++.+....-.+.+...  +..-..+.+++
T Consensus       267 -D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~-s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp  344 (456)
T KOG0266|consen  267 -DGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSA-SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP  344 (456)
T ss_pred             -CCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEc-CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECC
Confidence             467888999987766554443 355789999999877665 5577888888764321101122211  11124566788


Q ss_pred             CCCEEEEEc
Q 015463          305 KGEFWVAIH  313 (406)
Q Consensus       305 ~G~lwv~~~  313 (406)
                      +|.+.+...
T Consensus       345 ~~~~ll~~~  353 (456)
T KOG0266|consen  345 NGKYLLSAS  353 (456)
T ss_pred             CCcEEEEec
Confidence            888544443

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=97.38  E-value=0.0015  Score=64.93  Aligned_cols=119  Identities=16%  Similarity=0.179  Sum_probs=76.9

Q ss_pred             CCcceEEEEeCCCCcEEEEeCCC-----------------cEEEEeCCCC-------eEEEcccccCC------------
Q 015463          130 CGRPLGLRFDKKTGDLYIADAYF-----------------GLMKVGPEGG-------LATSLATEAEG------------  173 (406)
Q Consensus       130 ~~~p~gi~~d~~~g~L~Vad~~~-----------------gl~~~d~~~~-------~~~~l~~~~~~------------  173 (406)
                      -.||-+|++.+..|++|++...+                 .|+++-+.++       +...+....+.            
T Consensus       416 mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~  495 (616)
T COG3211         416 MDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANIN  495 (616)
T ss_pred             ccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCcc
Confidence            46889999998778899986542                 4899988775       33333221111            


Q ss_pred             -cccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccC--C
Q 015463          174 -VPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNL--Q  250 (406)
Q Consensus       174 -~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~--~  250 (406)
                       .-+..|..|++|+.|+||+.+..+....++.                     ..+-..+..=++++++++.+..+-  .
T Consensus       496 ~~~f~~PDnl~fD~~GrLWi~TDg~~s~~~~~---------------------~~G~~~m~~~~p~~g~~~rf~t~P~g~  554 (616)
T COG3211         496 ANWFNSPDNLAFDPWGRLWIQTDGSGSTLRNR---------------------FRGVTQMLTPDPKTGTIKRFLTGPIGC  554 (616)
T ss_pred             cccccCCCceEECCCCCEEEEecCCCCccCcc---------------------cccccccccCCCccceeeeeccCCCcc
Confidence             1245699999999999999875422111110                     011123555577778877766443  3


Q ss_pred             CcceEEEecCCCEEEEEeC
Q 015463          251 FPNGLSLSKDKSFFVFCEG  269 (406)
Q Consensus       251 ~~ngi~l~~d~~~l~v~~t  269 (406)
                      ...|.+++||+++++|.-.
T Consensus       555 E~tG~~FspD~~TlFV~vQ  573 (616)
T COG3211         555 EFTGPCFSPDGKTLFVNVQ  573 (616)
T ss_pred             eeecceeCCCCceEEEEec
Confidence            4568999999999988743

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=97.36  E-value=0.034  Score=51.97  Aligned_cols=217  Identities=16%  Similarity=0.183  Sum_probs=123.4

Q ss_pred             cccccccceeccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcC--
Q 015463           54 KNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHIC--  130 (406)
Q Consensus        54 ~~~l~~~~~~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  130 (406)
                      +..|...++.    +..|=+++..++  .||.++.. +|+++... ..-.-.....+ -..|-   .+    ...+..  
T Consensus        38 ~g~l~~~~r~----F~r~MGl~~~~~--~l~~~t~~-qiw~f~~~~n~l~~~~~~~~-~D~~y---vP----r~~~~TGd  102 (335)
T TIGR03032        38 NGELDVFERT----FPRPMGLAVSPQ--SLTLGTRY-QLWRFANVDNLLPAGQTHPG-YDRLY---VP----RASYVTGD  102 (335)
T ss_pred             CCcEEEEeec----cCccceeeeeCC--eEEEEEcc-eeEEcccccccccccccCCC-CCeEE---ee----eeeeeccC
Confidence            4455555555    456777777543  38998875 48888211 00000000000 00000   00    011111  


Q ss_pred             CcceEEEEeCCCCcEEEEeCC-CcEEEEeCCCCeEEEcccccC----CcccccccceEEcCCCCEEEEeCCCchhhhccc
Q 015463          131 GRPLGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAE----GVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQ  205 (406)
Q Consensus       131 ~~p~gi~~d~~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~----~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~  205 (406)
                      -..+.|++.  ++.+|+.... .-|..+++.-.-+......+-    ..---..|+++.....--|+|.-+..-...-|.
T Consensus       103 idiHdia~~--~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~~~sD~~~gWR  180 (335)
T TIGR03032       103 IDAHDLALG--AGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDDGEPRYVTALSQSDVADGWR  180 (335)
T ss_pred             cchhheeec--CCcEEEEECcceeEEEECCCCccccccCCccccccCccCceeecceeeeCCeEEEEEEeeccCCccccc
Confidence            224677883  5677766554 557788776443222221111    111125788998754467877643211111120


Q ss_pred             cccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCc
Q 015463          206 KENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAG  285 (406)
Q Consensus       206 ~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~  285 (406)
                                         -.+.+|+++ +|-.+++  ++.+++.+|.+..+. |+ .||+++...+.+.+++.+   .|
T Consensus       181 -------------------~~~~~gG~v-idv~s~e--vl~~GLsmPhSPRWh-dg-rLwvldsgtGev~~vD~~---~G  233 (335)
T TIGR03032       181 -------------------EGRRDGGCV-IDIPSGE--VVASGLSMPHSPRWY-QG-KLWLLNSGRGELGYVDPQ---AG  233 (335)
T ss_pred             -------------------ccccCCeEE-EEeCCCC--EEEcCccCCcCCcEe-CC-eEEEEECCCCEEEEEcCC---CC
Confidence                               023345554 6776664  578999999988775 44 499999999999999854   46


Q ss_pred             ceeeeecCCCCCCceEECCCCC-EEEEEccCC
Q 015463          286 NLEAFAILPGYPDNVRTNEKGE-FWVAIHCRR  316 (406)
Q Consensus       286 ~~~~~~~l~g~pd~i~~d~~G~-lwv~~~~~~  316 (406)
                      +.+.+..+||+|.|+.+.  |+ ++|++...|
T Consensus       234 ~~e~Va~vpG~~rGL~f~--G~llvVgmSk~R  263 (335)
T TIGR03032       234 KFQPVAFLPGFTRGLAFA--GDFAFVGLSKLR  263 (335)
T ss_pred             cEEEEEECCCCCccccee--CCEEEEEecccc
Confidence            778888999999999997  77 567776654

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.36  E-value=0.19  Score=49.85  Aligned_cols=140  Identities=15%  Similarity=0.134  Sum_probs=81.2

Q ss_pred             eEEEEeCCCCc-EEEEeCC---CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhcccccc
Q 015463          134 LGLRFDKKTGD-LYIADAY---FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKEN  208 (406)
Q Consensus       134 ~gi~~d~~~g~-L~Vad~~---~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~  208 (406)
                      ...++++ +|+ |+.+...   ..|+.+|.++++.+.+... .+    .....++.+||+ |+++...            
T Consensus       193 ~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~-~~----~~~~~~~spDg~~l~~~~~~------------  254 (417)
T TIGR02800       193 LSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREKVASF-PG----MNGAPAFSPDGSKLAVSLSK------------  254 (417)
T ss_pred             ecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEeecC-CC----CccceEECCCCCEEEEEECC------------
Confidence            3456777 454 4444332   3589999988865554321 11    233467888985 6666432            


Q ss_pred             ccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCC--CCeEEEEEeeCCCCcc
Q 015463          209 IPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS--VGRLHKYWLIGEKAGN  286 (406)
Q Consensus       209 ~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~--~~~i~~~~~~g~~~~~  286 (406)
                                        .....|+.+|..+++.+.+..........++++|++.++++...  ...|+.+++.+.+   
T Consensus       255 ------------------~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~---  313 (417)
T TIGR02800       255 ------------------DGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE---  313 (417)
T ss_pred             ------------------CCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC---
Confidence                              11245999999888777665433223356789999988766432  2368888876432   


Q ss_pred             eeeeecCCCCCCceEECCCCCEEEEE
Q 015463          287 LEAFAILPGYPDNVRTNEKGEFWVAI  312 (406)
Q Consensus       287 ~~~~~~l~g~pd~i~~d~~G~lwv~~  312 (406)
                      ...+............+++|+..+.+
T Consensus       314 ~~~l~~~~~~~~~~~~spdg~~i~~~  339 (417)
T TIGR02800       314 VRRLTFRGGYNASPSWSPDGDLIAFV  339 (417)
T ss_pred             EEEeecCCCCccCeEECCCCCEEEEE
Confidence            22222112233456778888744443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=97.36  E-value=0.06  Score=50.06  Aligned_cols=151  Identities=18%  Similarity=0.224  Sum_probs=87.1

Q ss_pred             CCCeEEEEeCCCCeE------EEecccC--CCcceEEEecC--CCEEEEEeCCCCeEEEEEeeCCCCcceeeeec--CC-
Q 015463          228 DTGRVLKYDPTTKQT------TVLLRNL--QFPNGLSLSKD--KSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI--LP-  294 (406)
Q Consensus       228 ~~g~l~~~d~~t~~~------~~~~~~~--~~~ngi~l~~d--~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~--l~-  294 (406)
                      ++|.|--|+|.-+..      .++....  .--.|+|+...  +++||.++..+++|.+|+-.=.+.....-|.+  +| 
T Consensus       108 EdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPa  187 (336)
T TIGR03118       108 EDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPA  187 (336)
T ss_pred             CCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCC
Confidence            356677777643332      1221111  11247777743  67899999988999999743111111122332  22 


Q ss_pred             C-CCCceEECCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCCEEEEEECCC
Q 015463          295 G-YPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSK  373 (406)
Q Consensus       295 g-~pd~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~  373 (406)
                      | -|-||.- -.|++||+.......          ..               --+.+...+.|-.||.+|+.++.+.. .
T Consensus       188 gyAPFnIqn-ig~~lyVtYA~qd~~----------~~---------------d~v~G~G~G~VdvFd~~G~l~~r~as-~  240 (336)
T TIGR03118       188 GYAPFNVQN-LGGTLYVTYAQQDAD----------RN---------------DEVAGAGLGYVNVFTLNGQLLRRVAS-S  240 (336)
T ss_pred             CCCCcceEE-ECCeEEEEEEecCCc----------cc---------------ccccCCCcceEEEEcCCCcEEEEecc-C
Confidence            1 2556654 468899997543110          00               01223556789999999999999854 3


Q ss_pred             CCeeeceeEEE------EeCCEEEEecCCCCeEEEEeC
Q 015463          374 GKVVKAISEVE------EKDGKLWMGSVLMPFVAVYDL  405 (406)
Q Consensus       374 g~~~~~~s~~~------~~~g~Ly~Gs~~~~~i~~~~~  405 (406)
                      |......-.+.      ...|.|.+|.+....|..+|.
T Consensus       241 g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~  278 (336)
T TIGR03118       241 GRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDP  278 (336)
T ss_pred             CcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecC
Confidence            32221111111      236899999999999988874

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=97.35  E-value=0.021  Score=51.94  Aligned_cols=163  Identities=15%  Similarity=0.240  Sum_probs=106.9

Q ss_pred             ceeccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeC
Q 015463           61 EIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK  140 (406)
Q Consensus        61 ~~~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~  140 (406)
                      .+.+.+.-..--++++++|++.+.+|+.|..|..|+..+...+......                 +  -+-...++|.|
T Consensus        98 t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~-----------------~--~~WVscvrfsP  158 (315)
T KOG0279|consen   98 TRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDS-----------------H--REWVSCVRFSP  158 (315)
T ss_pred             EEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCC-----------------C--cCcEEEEEEcC
Confidence            3455666666788999999988999999999999986633333322110                 0  12345688998


Q ss_pred             CCCcEEEEeCC--CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCC
Q 015463          141 KTGDLYIADAY--FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLN  218 (406)
Q Consensus       141 ~~g~L~Vad~~--~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~  218 (406)
                      ...+.+|..+.  +-+-.+|.++-+++.   ...| ...+++.+++.+||.+-.+.                        
T Consensus       159 ~~~~p~Ivs~s~DktvKvWnl~~~~l~~---~~~g-h~~~v~t~~vSpDGslcasG------------------------  210 (315)
T KOG0279|consen  159 NESNPIIVSASWDKTVKVWNLRNCQLRT---TFIG-HSGYVNTVTVSPDGSLCASG------------------------  210 (315)
T ss_pred             CCCCcEEEEccCCceEEEEccCCcchhh---cccc-ccccEEEEEECCCCCEEecC------------------------
Confidence            44465555543  557778877654332   2223 23468899999999987763                        


Q ss_pred             CCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          219 DPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       219 ~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                              ..+|.++.+|.+.++--...+.....+.++++|.. ..+.+.+ ...|..++++
T Consensus       211 --------gkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnr-ywL~~at-~~sIkIwdl~  262 (315)
T KOG0279|consen  211 --------GKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNR-YWLCAAT-ATSIKIWDLE  262 (315)
T ss_pred             --------CCCceEEEEEccCCceeEeccCCCeEeeEEecCCc-eeEeecc-CCceEEEecc
Confidence                    33577888888877665556666677889999865 3334434 4567777765

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.34  E-value=0.19  Score=50.32  Aligned_cols=74  Identities=14%  Similarity=0.109  Sum_probs=43.4

Q ss_pred             eEEEEeCC--CCeEEEecccCCCcceEEEecCCCEEEEEeCC--CCeEEEEEeeCCCCcceeeeecCCCCCCceEECCCC
Q 015463          231 RVLKYDPT--TKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS--VGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKG  306 (406)
Q Consensus       231 ~l~~~d~~--t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~--~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G  306 (406)
                      .|+.++..  ++..+.+..........+++||++.++++...  ..+|+++++++.   ..+.+...++...+....+||
T Consensus       306 ~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g---~~~~Lt~~~~~~~~p~wSpDG  382 (428)
T PRK01029        306 RIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG---RDYQLTTSPENKESPSWAIDS  382 (428)
T ss_pred             eEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC---CeEEccCCCCCccceEECCCC
Confidence            57777653  23344443332333457899999988877543  247888887643   233333222334556777888


Q ss_pred             C
Q 015463          307 E  307 (406)
Q Consensus       307 ~  307 (406)
                      +
T Consensus       383 ~  383 (428)
T PRK01029        383 L  383 (428)
T ss_pred             C
Confidence            7

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=97.34  E-value=0.0014  Score=49.82  Aligned_cols=56  Identities=25%  Similarity=0.432  Sum_probs=40.8

Q ss_pred             EEEEeCCCCcEEEEeCC------------------CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeC
Q 015463          135 GLRFDKKTGDLYIADAY------------------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDS  195 (406)
Q Consensus       135 gi~~d~~~g~L~Vad~~------------------~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~  195 (406)
                      ++.++.++|.+|++++.                  ++|+++||.+++.+.+...     +.+||++++++|+. +.|+..
T Consensus         2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~-----L~fpNGVals~d~~~vlv~Et   76 (89)
T PF03088_consen    2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDG-----LYFPNGVALSPDESFVLVAET   76 (89)
T ss_dssp             EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEE-----ESSEEEEEE-TTSSEEEEEEG
T ss_pred             ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhC-----CCccCeEEEcCCCCEEEEEec
Confidence            56778734999999863                  2499999999998887654     67899999999996 777764

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.33  E-value=0.11  Score=46.82  Aligned_cols=171  Identities=21%  Similarity=0.267  Sum_probs=89.0

Q ss_pred             CCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCCCcEEE
Q 015463           78 PLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMK  156 (406)
Q Consensus        78 ~~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~~gl~~  156 (406)
                      .++. +|+++.++.|+.++.. +-.........                  .....|   ..+  ++.+|++...+.|+.
T Consensus        35 ~~~~-v~~~~~~~~l~~~d~~tG~~~W~~~~~~------------------~~~~~~---~~~--~~~v~v~~~~~~l~~   90 (238)
T PF13360_consen   35 DGGR-VYVASGDGNLYALDAKTGKVLWRFDLPG------------------PISGAP---VVD--GGRVYVGTSDGSLYA   90 (238)
T ss_dssp             ETTE-EEEEETTSEEEEEETTTSEEEEEEECSS------------------CGGSGE---EEE--TTEEEEEETTSEEEE
T ss_pred             eCCE-EEEEcCCCEEEEEECCCCCEEEEeeccc------------------ccccee---eec--ccccccccceeeeEe
Confidence            3454 9999999999999975 32222211110                  001112   233  688999987778999


Q ss_pred             EeCCCCeEEEc--ccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEE
Q 015463          157 VGPEGGLATSL--ATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLK  234 (406)
Q Consensus       157 ~d~~~~~~~~l--~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~  234 (406)
                      +|.++|+..--  ....+..........+++ ++.+|++..+                                 |.|+.
T Consensus        91 ~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---------------------------------g~l~~  136 (238)
T PF13360_consen   91 LDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTSS---------------------------------GKLVA  136 (238)
T ss_dssp             EETTTSCEEEEEEE-SSCTCSTB--SEEEEE-TTEEEEEETC---------------------------------SEEEE
T ss_pred             cccCCcceeeeeccccccccccccccCceEe-cCEEEEEecc---------------------------------CcEEE
Confidence            99777765322  111111112223334444 4567777643                                 78999


Q ss_pred             EeCCCCeEEEecccCCCc------------ceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEE
Q 015463          235 YDPTTKQTTVLLRNLQFP------------NGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRT  302 (406)
Q Consensus       235 ~d~~t~~~~~~~~~~~~~------------ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~  302 (406)
                      +|+++|+..--... ..+            ++-.+..++ .+|++.. .+++..+++..   ++ ..+....+.+..+..
T Consensus       137 ~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~-~g~~~~~d~~t---g~-~~w~~~~~~~~~~~~  209 (238)
T PF13360_consen  137 LDPKTGKLLWKYPV-GEPRGSSPISSFSDINGSPVISDG-RVYVSSG-DGRVVAVDLAT---GE-KLWSKPISGIYSLPS  209 (238)
T ss_dssp             EETTTTEEEEEEES-STT-SS--EEEETTEEEEEECCTT-EEEEECC-TSSEEEEETTT---TE-EEEEECSS-ECECEE
T ss_pred             EecCCCcEEEEeec-CCCCCCcceeeecccccceEEECC-EEEEEcC-CCeEEEEECCC---CC-EEEEecCCCccCCce
Confidence            99999976332211 111            122232334 6777654 44566666543   22 123211121223233


Q ss_pred             CCCCCEEEEEc
Q 015463          303 NEKGEFWVAIH  313 (406)
Q Consensus       303 d~~G~lwv~~~  313 (406)
                      ..++.+|++..
T Consensus       210 ~~~~~l~~~~~  220 (238)
T PF13360_consen  210 VDGGTLYVTSS  220 (238)
T ss_dssp             CCCTEEEEEET
T ss_pred             eeCCEEEEEeC
Confidence            45566888773

...

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.30  E-value=0.13  Score=46.73  Aligned_cols=74  Identities=19%  Similarity=0.113  Sum_probs=48.6

Q ss_pred             EEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCCCc
Q 015463           74 MAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFG  153 (406)
Q Consensus        74 i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~~g  153 (406)
                      -..|.++.++|.|++|+..+.+|.....-+-.      ..|.+.+           ..   +=++++.++.||++...+.
T Consensus        99 a~~d~~~glIycgshd~~~yalD~~~~~cVyk------skcgG~~-----------f~---sP~i~~g~~sly~a~t~G~  158 (354)
T KOG4649|consen   99 AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYK------SKCGGGT-----------FV---SPVIAPGDGSLYAAITAGA  158 (354)
T ss_pred             eEEcCCCceEEEecCCCcEEEecccccceEEe------cccCCce-----------ec---cceecCCCceEEEEeccce
Confidence            35677888999999999999999872221111      1232211           11   2245554789999998888


Q ss_pred             EEEEeCCCCeEEEc
Q 015463          154 LMKVGPEGGLATSL  167 (406)
Q Consensus       154 l~~~d~~~~~~~~l  167 (406)
                      +.+++++......+
T Consensus       159 vlavt~~~~~~~~~  172 (354)
T KOG4649|consen  159 VLAVTKNPYSSTEF  172 (354)
T ss_pred             EEEEccCCCCccee
Confidence            99999887654443

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=97.29  E-value=0.22  Score=49.24  Aligned_cols=220  Identities=15%  Similarity=0.148  Sum_probs=113.1

Q ss_pred             CcceEEEcCCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEE
Q 015463           70 GPESMAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~  146 (406)
                      .-.++.+.|||..+-+...||+|+.+|..   .+.++..                    .....|...+|...|+...+.
T Consensus       192 FV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~--------------------~~aHkGsIfalsWsPDs~~~~  251 (603)
T KOG0318|consen  192 FVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELED--------------------SDAHKGSIFALSWSPDSTQFL  251 (603)
T ss_pred             ceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecC--------------------CCCccccEEEEEECCCCceEE
Confidence            45788899999955566789999999987   2222211                    112246688899998545566


Q ss_pred             EEeCCCcEEEEeCCCCeEE-Ecccc--cCCcccc--cccc--eEEcCCCCEEEEeCCCchhhhccccccccccccccCCC
Q 015463          147 IADAYFGLMKVGPEGGLAT-SLATE--AEGVPLR--FTND--LDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLND  219 (406)
Q Consensus       147 Vad~~~gl~~~d~~~~~~~-~l~~~--~~~~~~~--~~~~--l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~  219 (406)
                      -+.+++.+-.+|..++++. .+...  .+..+..  ..++  |.+.-+|.|=+-+.+..-..+..+-++.++..+--+.+
T Consensus       252 T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d  331 (603)
T KOG0318|consen  252 TVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPD  331 (603)
T ss_pred             EecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCC
Confidence            6666666777776655432 22111  1111000  0111  12222333222221110011111101111111111122


Q ss_pred             CCCCcccCCCCeEEEEeCCCCeEEEecccCC--CcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCC
Q 015463          220 PSPIKITKDTGRVLKYDPTTKQTTVLLRNLQ--FPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYP  297 (406)
Q Consensus       220 ~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~--~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~p  297 (406)
                      ...|.-+..+|.+..++..++....+.....  .-.+++.+..++ ++-+ .....|++..+++......++ .++...|
T Consensus       332 ~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~-~~t~-g~Dd~l~~~~~~~~~~t~~~~-~~lg~QP  408 (603)
T KOG0318|consen  332 GKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE-LFTI-GWDDTLRVISLKDNGYTKSEV-VKLGSQP  408 (603)
T ss_pred             CCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCc-EEEE-ecCCeEEEEecccCcccccce-eecCCCc
Confidence            2334445557889999988876655532222  234666654343 4343 345789998887544333333 3455668


Q ss_pred             CceEECCCCCEEEEE
Q 015463          298 DNVRTNEKGEFWVAI  312 (406)
Q Consensus       298 d~i~~d~~G~lwv~~  312 (406)
                      -+++..++|.+-+..
T Consensus       409 ~~lav~~d~~~avv~  423 (603)
T KOG0318|consen  409 KGLAVLSDGGTAVVA  423 (603)
T ss_pred             eeEEEcCCCCEEEEE
Confidence            899999888654443

>PRK00178 tolB translocation protein TolB; Provisional

Probab=97.28  E-value=0.24  Score=49.44  Aligned_cols=136  Identities=15%  Similarity=0.220  Sum_probs=80.9

Q ss_pred             eEEEEeCCCCc-E-EEEeCC--CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhcccccc
Q 015463          134 LGLRFDKKTGD-L-YIADAY--FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKEN  208 (406)
Q Consensus       134 ~gi~~d~~~g~-L-~Vad~~--~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~  208 (406)
                      ....+++ +|+ | |+....  ..|++++.++++.+.+... .+    ......+.+||+ |+++...            
T Consensus       202 ~~p~wSp-DG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~-~g----~~~~~~~SpDG~~la~~~~~------------  263 (430)
T PRK00178        202 LSPRWSP-DGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF-EG----LNGAPAWSPDGSKLAFVLSK------------  263 (430)
T ss_pred             eeeeECC-CCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC-CC----CcCCeEECCCCCEEEEEEcc------------
Confidence            4567888 554 5 444332  2599999998877665422 11    123467888985 6655432            


Q ss_pred             ccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCC--CCeEEEEEeeCCCCcc
Q 015463          209 IPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS--VGRLHKYWLIGEKAGN  286 (406)
Q Consensus       209 ~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~--~~~i~~~~~~g~~~~~  286 (406)
                                        .+...|+.+|.++++.+.+..........++++|++.++++...  ...|+++++.+.+   
T Consensus       264 ------------------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~---  322 (430)
T PRK00178        264 ------------------DGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR---  322 (430)
T ss_pred             ------------------CCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC---
Confidence                              11246999999988877665433334457799999988776532  2468888876432   


Q ss_pred             eeeeecCCCCCCceEECCCCCE
Q 015463          287 LEAFAILPGYPDNVRTNEKGEF  308 (406)
Q Consensus       287 ~~~~~~l~g~pd~i~~d~~G~l  308 (406)
                      .+.+............+++|+.
T Consensus       323 ~~~lt~~~~~~~~~~~Spdg~~  344 (430)
T PRK00178        323 AERVTFVGNYNARPRLSADGKT  344 (430)
T ss_pred             EEEeecCCCCccceEECCCCCE
Confidence            2222211112234566788873

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.27  E-value=0.13  Score=46.37  Aligned_cols=100  Identities=18%  Similarity=0.146  Sum_probs=60.3

Q ss_pred             CCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCC
Q 015463          142 TGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPS  221 (406)
Q Consensus       142 ~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~  221 (406)
                      ++.+|+++..+.|+.+|..+|+..--... .+. ...+  . ...++.+|+.+..                         
T Consensus        36 ~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~-~~~~--~-~~~~~~v~v~~~~-------------------------   85 (238)
T PF13360_consen   36 GGRVYVASGDGNLYALDAKTGKVLWRFDL-PGP-ISGA--P-VVDGGRVYVGTSD-------------------------   85 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSEEEEEEEC-SSC-GGSG--E-EEETTEEEEEETT-------------------------
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEeec-ccc-ccce--e-eecccccccccce-------------------------
Confidence            78999998888999999988864321111 111 1111  2 3346788888743                         


Q ss_pred             CCcccCCCCeEEEEeCCCCeEEEec-c-c---CCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          222 PIKITKDTGRVLKYDPTTKQTTVLL-R-N---LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       222 ~~~~~~~~g~l~~~d~~t~~~~~~~-~-~---~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                              +.|+.+|..+|+..--. . .   ...........+++.+++... .+.|..++++
T Consensus        86 --------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~l~~~d~~  140 (238)
T PF13360_consen   86 --------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-SGKLVALDPK  140 (238)
T ss_dssp             --------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-CSEEEEEETT
T ss_pred             --------eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec-cCcEEEEecC
Confidence                    58999998888764331 1 1   111112223334667777664 5788888865

...

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.26  E-value=0.14  Score=48.08  Aligned_cols=107  Identities=17%  Similarity=0.116  Sum_probs=66.2

Q ss_pred             CcceEEEEeCCCCcEEEEeCC---CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccc
Q 015463          131 GRPLGLRFDKKTGDLYIADAY---FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKE  207 (406)
Q Consensus       131 ~~p~gi~~d~~~g~L~Vad~~---~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~  207 (406)
                      .|.++++.++ .....|+-+.   .=++.+|+.+++........++.  .|--.-++++||++.+++.+      ++   
T Consensus         5 ~RgH~~a~~p-~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gR--HFyGHg~fs~dG~~LytTEn------d~---   72 (305)
T PF07433_consen    5 ARGHGVAAHP-TRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGR--HFYGHGVFSPDGRLLYTTEN------DY---   72 (305)
T ss_pred             ccccceeeCC-CCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCC--EEecCEEEcCCCCEEEEecc------cc---
Confidence            4566777776 3333333222   23788899888765443333333  23335678899977776643      11   


Q ss_pred             cccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEE---ecccCCCcceEEEecCCCEEEEEe
Q 015463          208 NIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTV---LLRNLQFPNGLSLSKDKSFFVFCE  268 (406)
Q Consensus       208 ~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~---~~~~~~~~ngi~l~~d~~~l~v~~  268 (406)
                                        ....|.|-+||.. ..++.   +...--.|.-+.+.+|+++|.|++
T Consensus        73 ------------------~~g~G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN  117 (305)
T PF07433_consen   73 ------------------ETGRGVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVAN  117 (305)
T ss_pred             ------------------CCCcEEEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEc
Confidence                              3446889999998 33333   334445678899999999998885

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.26  E-value=0.039  Score=53.38  Aligned_cols=134  Identities=11%  Similarity=0.098  Sum_probs=69.2

Q ss_pred             EEEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccc--ccccccc
Q 015463          135 GLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQ--KENIPLQ  212 (406)
Q Consensus       135 gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~--~~~~~~~  212 (406)
                      |..+.+++..+|-....+.|.++|.++.+.+.+....++-.  .-.....+.|++.+++....+.   ++.  ..-..+.
T Consensus        85 g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~--g~gt~v~n~d~t~~~g~e~~~~---d~~~l~~~~~f~  159 (386)
T PF14583_consen   85 GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWK--GYGTWVANSDCTKLVGIEISRE---DWKPLTKWKGFR  159 (386)
T ss_dssp             T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEE--EEEEEEE-TTSSEEEEEEEEGG---G-----SHHHHH
T ss_pred             ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccc--cccceeeCCCccEEEEEEEeeh---hccCccccHHHH
Confidence            44555645565433345789999999988766554332211  1122345668888776532111   110  0001245


Q ss_pred             ccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEec-CCCEEEEEeCC-----CCeEEEEEeeCC
Q 015463          213 LCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSK-DKSFFVFCEGS-----VGRLHKYWLIGE  282 (406)
Q Consensus       213 ~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~-d~~~l~v~~t~-----~~~i~~~~~~g~  282 (406)
                      ++++         ..+..+|+.+|.+||+.+++.+.-...+=+.++| |...+-+|..+     ..|||.++.+|.
T Consensus       160 e~~~---------a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~  226 (386)
T PF14583_consen  160 EFYE---------ARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS  226 (386)
T ss_dssp             HHHH---------C---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-
T ss_pred             HHHh---------hCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC
Confidence            5555         6677899999999999998876555555566776 33344444332     258999987764

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.23  E-value=0.0053  Score=53.65  Aligned_cols=103  Identities=21%  Similarity=0.341  Sum_probs=69.5

Q ss_pred             CcceEEEEeCCCCcEEEEeCCCcEEEEeCCCCe-EEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccc
Q 015463          131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGL-ATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENI  209 (406)
Q Consensus       131 ~~p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~-~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~  209 (406)
                      |.=+|++-|  +.+||.+|...-|..-||++=. ...+....+|.|....|.+..- ||.+|.-.+-             
T Consensus       131 GeGWgLt~d--~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~-------------  194 (262)
T COG3823         131 GEGWGLTSD--DKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQ-------------  194 (262)
T ss_pred             CcceeeecC--CcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeee-------------
Confidence            445788877  5679999876778888887521 1122233467777777777654 6777765432             


Q ss_pred             cccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecc--c-----------CCCcceEEEecCCCEEEEEe
Q 015463          210 PLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLR--N-----------LQFPNGLSLSKDKSFFVFCE  268 (406)
Q Consensus       210 ~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~--~-----------~~~~ngi~l~~d~~~l~v~~  268 (406)
                                         +.++.+++|++|++....+  +           ..-.||||..++++.+|++.
T Consensus       195 -------------------t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         195 -------------------TTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             -------------------ecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence                               2469999999998866531  1           12368999999998888864

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.19  E-value=0.015  Score=56.50  Aligned_cols=88  Identities=16%  Similarity=0.153  Sum_probs=61.0

Q ss_pred             CCCCcccCCCC-eEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee-cCCCCC
Q 015463          220 PSPIKITKDTG-RVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPGYP  297 (406)
Q Consensus       220 ~~~~~~~~~~g-~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~-~l~g~p  297 (406)
                      ++...++..+| .|-.||..+++.++....+.....+.+++||+.+.+++. +..||.++++..   +.+... ...|+.
T Consensus       371 ~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNd-r~el~vididng---nv~~idkS~~~lI  446 (668)
T COG4946         371 PEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAND-RFELWVIDIDNG---NVRLIDKSEYGLI  446 (668)
T ss_pred             CcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcC-ceEEEEEEecCC---CeeEeccccccee
Confidence            33444566666 788999999999999888888888999999999888764 678999999853   222222 123444


Q ss_pred             CceEECCCCCEEEEE
Q 015463          298 DNVRTNEKGEFWVAI  312 (406)
Q Consensus       298 d~i~~d~~G~lwv~~  312 (406)
                      .++...+++ -|+|.
T Consensus       447 tdf~~~~ns-r~iAY  460 (668)
T COG4946         447 TDFDWHPNS-RWIAY  460 (668)
T ss_pred             EEEEEcCCc-eeEEE
Confidence            455555544 35554

>PLN00181 protein SPA1-RELATED; Provisional

Probab=97.18  E-value=0.51  Score=51.19  Aligned_cols=160  Identities=9%  Similarity=-0.017  Sum_probs=90.9

Q ss_pred             cceEEEcCCCCeeEEEecCCEEEEEeCCc-eeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-EEEE
Q 015463           71 PESMAFDPLGRGPYTGVADGRILFWDGLK-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYIA  148 (406)
Q Consensus        71 pe~i~~d~~g~~ly~g~~~g~I~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-L~Va  148 (406)
                      ..+++++++|+.+.++..++.|..|+... ...-.  ...... .          .... .....++++.+..+. |..+
T Consensus       486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~--~~~~~~-~----------~~~~-~~~v~~l~~~~~~~~~las~  551 (793)
T PLN00181        486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR--DIHYPV-V----------ELAS-RSKLSGICWNSYIKSQVASS  551 (793)
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEECCccccccc--ccccce-E----------Eecc-cCceeeEEeccCCCCEEEEE
Confidence            46788999999888899999999998541 00000  000000 0          0000 122456777653344 4444


Q ss_pred             eCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcC-CCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463          149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK  227 (406)
Q Consensus       149 d~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  227 (406)
                      +..+.|..+|..+++........    ...+.++++++ +|.++++.+.                               
T Consensus       552 ~~Dg~v~lWd~~~~~~~~~~~~H----~~~V~~l~~~p~~~~~L~Sgs~-------------------------------  596 (793)
T PLN00181        552 NFEGVVQVWDVARSQLVTEMKEH----EKRVWSIDYSSADPTLLASGSD-------------------------------  596 (793)
T ss_pred             eCCCeEEEEECCCCeEEEEecCC----CCCEEEEEEcCCCCCEEEEEcC-------------------------------
Confidence            44456778898766533211111    13477888885 7777777543                               


Q ss_pred             CCCeEEEEeCCCCeEEEecccCCCcceEEEec-CCCEEEEEeCCCCeEEEEEeeC
Q 015463          228 DTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSK-DKSFFVFCEGSVGRLHKYWLIG  281 (406)
Q Consensus       228 ~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~-d~~~l~v~~t~~~~i~~~~~~g  281 (406)
                       +|.+..||..+++.............+++.+ ++..+ ++....+.|..|++..
T Consensus       597 -Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~l-atgs~dg~I~iwD~~~  649 (793)
T PLN00181        597 -DGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSL-AFGSADHKVYYYDLRN  649 (793)
T ss_pred             -CCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEE-EEEeCCCeEEEEECCC
Confidence             4678888887765433222222334566644 56554 4455567888888753

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=97.15  E-value=0.08  Score=48.79  Aligned_cols=150  Identities=17%  Similarity=0.212  Sum_probs=86.0

Q ss_pred             eEEEcCCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-EEEEeC
Q 015463           73 SMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYIADA  150 (406)
Q Consensus        73 ~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-L~Vad~  150 (406)
                      .+.+.|+|..+-+|..|..|+.|+.. .-.-+....                    ...+-..++.+.+ +++ |+-+..
T Consensus        52 ~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lk--------------------gHsgAVM~l~~~~-d~s~i~S~gt  110 (338)
T KOG0265|consen   52 TIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLK--------------------GHSGAVMELHGMR-DGSHILSCGT  110 (338)
T ss_pred             EEEECCCCCeEeecCCcceEEEEeccccccceeeec--------------------cccceeEeeeecc-CCCEEEEecC
Confidence            34588999977788899999999743 111111110                    1124467788887 555 555555


Q ss_pred             CCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCC
Q 015463          151 YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTG  230 (406)
Q Consensus       151 ~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g  230 (406)
                      ++.++.+|.++|+...-...    -..++|.+...+.|-..+.+.                               ..++
T Consensus       111 Dk~v~~wD~~tG~~~rk~k~----h~~~vNs~~p~rrg~~lv~Sg-------------------------------sdD~  155 (338)
T KOG0265|consen  111 DKTVRGWDAETGKRIRKHKG----HTSFVNSLDPSRRGPQLVCSG-------------------------------SDDG  155 (338)
T ss_pred             CceEEEEecccceeeehhcc----ccceeeecCccccCCeEEEec-------------------------------CCCc
Confidence            68899999999875432111    124677777777776666553                               3457


Q ss_pred             eEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEe
Q 015463          231 RVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWL  279 (406)
Q Consensus       231 ~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~  279 (406)
                      .+-.||..++......+.-.....+++..+.+-+ ++.--.+.|..+++
T Consensus       156 t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv-~sggIdn~ikvWd~  203 (338)
T KOG0265|consen  156 TLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQV-ISGGIDNDIKVWDL  203 (338)
T ss_pred             eEEEEeecccchhhccccceeEEEEEecccccce-eeccccCceeeecc
Confidence            7888888755433222222222345555444433 33222345555554

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=97.10  E-value=0.11  Score=45.90  Aligned_cols=103  Identities=11%  Similarity=0.097  Sum_probs=65.7

Q ss_pred             CcceEEEEeCCCCcEEEEeC--CCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccc
Q 015463          131 GRPLGLRFDKKTGDLYIADA--YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKEN  208 (406)
Q Consensus       131 ~~p~gi~~d~~~g~L~Vad~--~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~  208 (406)
                      +....+++.|++..+.|...  ...+..+|.++..+..+.       -...|.+...|+|++.+....            
T Consensus        60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~-------~~~~n~i~wsP~G~~l~~~g~------------  120 (194)
T PF08662_consen   60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFG-------TQPRNTISWSPDGRFLVLAGF------------  120 (194)
T ss_pred             CceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeec-------CCCceEEEECCCCCEEEEEEc------------
Confidence            33678999994344545432  246888888754444332       124578999999987776532            


Q ss_pred             ccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCC
Q 015463          209 IPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS  270 (406)
Q Consensus       209 ~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~  270 (406)
                                       +...|.|..||.++.+..... .......++++|||+++..+.+.
T Consensus       121 -----------------~n~~G~l~~wd~~~~~~i~~~-~~~~~t~~~WsPdGr~~~ta~t~  164 (194)
T PF08662_consen  121 -----------------GNLNGDLEFWDVRKKKKISTF-EHSDATDVEWSPDGRYLATATTS  164 (194)
T ss_pred             -----------------cCCCcEEEEEECCCCEEeecc-ccCcEEEEEEcCCCCEEEEEEec
Confidence                             222477889998855443222 23345789999999998877653

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=97.09  E-value=0.037  Score=56.47  Aligned_cols=86  Identities=20%  Similarity=0.405  Sum_probs=52.9

Q ss_pred             CcccccccceEEcC-CCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCC-------eEEE
Q 015463          173 GVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTK-------QTTV  244 (406)
Q Consensus       173 ~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~-------~~~~  244 (406)
                      ..++..+.++.+++ +|.+||+.++..- +..        ..    .+..+.......|.|++|++..+       +++.
T Consensus       346 AT~f~RpEgi~~~p~~g~vY~a~T~~~~-r~~--------~~----~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~  412 (524)
T PF05787_consen  346 ATPFDRPEGITVNPDDGEVYFALTNNSG-RGE--------SD----VDAANPRAGNGYGQIYRYDPDGNDHAATTFTWEL  412 (524)
T ss_pred             cccccCccCeeEeCCCCEEEEEEecCCC-Ccc--------cc----cccCCcccCCcccEEEEecccCCccccceeEEEE
Confidence            35678899999987 5899999764320 000        00    00111112445689999998866       3433


Q ss_pred             ecc------------------cCCCcceEEEecCCCEEEEEeCCCC
Q 015463          245 LLR------------------NLQFPNGLSLSKDKSFFVFCEGSVG  272 (406)
Q Consensus       245 ~~~------------------~~~~~ngi~l~~d~~~l~v~~t~~~  272 (406)
                      +..                  .+..|.+|+++++++ ||++|....
T Consensus       413 ~~~~g~~~~~~~~~~~~~~~~~f~sPDNL~~d~~G~-LwI~eD~~~  457 (524)
T PF05787_consen  413 FLVGGDPTDASGNGSNKCDDNGFASPDNLAFDPDGN-LWIQEDGGG  457 (524)
T ss_pred             EEEecCcccccccccCcccCCCcCCCCceEECCCCC-EEEEeCCCC
Confidence            321                  245678899999987 777776544

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.04  E-value=0.14  Score=47.02  Aligned_cols=154  Identities=19%  Similarity=0.217  Sum_probs=95.6

Q ss_pred             ccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEe--cccCCCcce
Q 015463          177 RFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVL--LRNLQFPNG  254 (406)
Q Consensus       177 ~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~--~~~~~~~ng  254 (406)
                      .|..++.+..+|.+|-++.-.                              +...|.++|++|+++...  ...-.|..|
T Consensus        45 aFTQGL~~~~~g~LyESTG~y------------------------------G~S~l~~~d~~tg~~~~~~~l~~~~FgEG   94 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLY------------------------------GQSSLRKVDLETGKVLQSVPLPPRYFGEG   94 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECST------------------------------TEEEEEEEETTTSSEEEEEE-TTT--EEE
T ss_pred             ccCccEEecCCCEEEEeCCCC------------------------------CcEEEEEEECCCCcEEEEEECCcccccee
Confidence            466788887799999998531                              124699999999986432  455568889


Q ss_pred             EEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCCCCEEEEEccCCcchhhhhhcChhhhhhhh
Q 015463          255 LSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLL  334 (406)
Q Consensus       255 i~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~  334 (406)
                      +++..|  .+|.-.-.++..++|+.+.  ......| ..+|-.-|++.|. ..||++..+.+                  
T Consensus        95 it~~~d--~l~qLTWk~~~~f~yd~~t--l~~~~~~-~y~~EGWGLt~dg-~~Li~SDGS~~------------------  150 (264)
T PF05096_consen   95 ITILGD--KLYQLTWKEGTGFVYDPNT--LKKIGTF-PYPGEGWGLTSDG-KRLIMSDGSSR------------------  150 (264)
T ss_dssp             EEEETT--EEEEEESSSSEEEEEETTT--TEEEEEE-E-SSS--EEEECS-SCEEEE-SSSE------------------
T ss_pred             EEEECC--EEEEEEecCCeEEEEcccc--ceEEEEE-ecCCcceEEEcCC-CEEEEECCccc------------------
Confidence            999744  4777666667888898652  1122222 2334445788763 46888886541                  


Q ss_pred             ccCccceeeeeEeecCcceEEEEEECCCC-CEEEEEE-CCCCCeeeceeEEEEeCCEEEEecCCCCeEEEEeC
Q 015463          335 KLPISAKTHYLIHVGGRLHAMAVKYSPEG-KILQVLE-DSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDL  405 (406)
Q Consensus       335 ~l~~~~~~~~~~~~~~~~~~~v~~~d~~g-~~~~~~~-~~~g~~~~~~s~~~~~~g~Ly~Gs~~~~~i~~~~~  405 (406)
                                           +..+||+. +...... ..+|..+..+..+.-.+|+||---+..+.|.++|.
T Consensus       151 ---------------------L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp  202 (264)
T PF05096_consen  151 ---------------------LYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDP  202 (264)
T ss_dssp             ---------------------EEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEET
T ss_pred             ---------------------eEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeC
Confidence                                 44556642 2332222 12566666677776779999999999999999985

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PTZ00420 coronin; Provisional

Probab=97.00  E-value=0.51  Score=48.73  Aligned_cols=165  Identities=11%  Similarity=0.029  Sum_probs=94.0

Q ss_pred             cCcccCcceEEEcCC-CCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCC
Q 015463           65 LNQIQGPESMAFDPL-GRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT  142 (406)
Q Consensus        65 ~~~~~gpe~i~~d~~-g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~  142 (406)
                      .+.-....++++.++ ++.+.+++.+|.|..|+.. .-....... .  ..|          ...........+++.+ +
T Consensus        71 ~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~-~--p~~----------~L~gH~~~V~sVaf~P-~  136 (568)
T PTZ00420         71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK-D--PQC----------ILKGHKKKISIIDWNP-M  136 (568)
T ss_pred             cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccc-c--ceE----------EeecCCCcEEEEEECC-C
Confidence            344445678899886 6778899999999999864 110000000 0  000          0111124466889998 5


Q ss_pred             Cc-EEE-EeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCC
Q 015463          143 GD-LYI-ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDP  220 (406)
Q Consensus       143 g~-L~V-ad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~  220 (406)
                      +. +.+ +...+.|..+|..+++...-.. .    ...+.+++++++|.+.++.+.                        
T Consensus       137 g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~----~~~V~SlswspdG~lLat~s~------------------------  187 (568)
T PTZ00420        137 NYYIMCSSGFDSFVNIWDIENEKRAFQIN-M----PKKLSSLKWNIKGNLLSGTCV------------------------  187 (568)
T ss_pred             CCeEEEEEeCCCeEEEEECCCCcEEEEEe-c----CCcEEEEEECCCCCEEEEEec------------------------
Confidence            54 433 3344668889988775322111 1    124678899999998877542                        


Q ss_pred             CCCcccCCCCeEEEEeCCCCeEEEecccCCCc-ce--E---EEecCCCEEEEEeCCC---CeEEEEEee
Q 015463          221 SPIKITKDTGRVLKYDPTTKQTTVLLRNLQFP-NG--L---SLSKDKSFFVFCEGSV---GRLHKYWLI  280 (406)
Q Consensus       221 ~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~-ng--i---~l~~d~~~l~v~~t~~---~~i~~~~~~  280 (406)
                              ++.|..||+.+++...-..+.... +.  +   .+++|++.++.+....   ..|..+++.
T Consensus       188 --------D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr  248 (568)
T PTZ00420        188 --------GKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLK  248 (568)
T ss_pred             --------CCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECC
Confidence                    367899999887654322222111 11  1   2346777665554433   247777765

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=96.99  E-value=0.1  Score=50.14  Aligned_cols=64  Identities=16%  Similarity=0.272  Sum_probs=43.8

Q ss_pred             cceEEEEeCCCCcEEEEeCCC-------cEEEEeCCCCeEEEcc--ccc-------CC-cccccccceEEcCCCC-EEEE
Q 015463          132 RPLGLRFDKKTGDLYIADAYF-------GLMKVGPEGGLATSLA--TEA-------EG-VPLRFTNDLDIDDEGN-VYFT  193 (406)
Q Consensus       132 ~p~gi~~d~~~g~L~Vad~~~-------gl~~~d~~~~~~~~l~--~~~-------~~-~~~~~~~~l~~d~dG~-ly~t  193 (406)
                      .+-||++.+ +|.+||++.+.       .|++++.++...+.+.  ...       .+ .....+.+|++.+||. ||+.
T Consensus        86 D~Egi~~~~-~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~  164 (326)
T PF13449_consen   86 DPEGIAVPP-DGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA  164 (326)
T ss_pred             ChhHeEEec-CCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence            355899966 89999999865       5999998854434331  111       11 2334577899999998 8888


Q ss_pred             eCC
Q 015463          194 DSS  196 (406)
Q Consensus       194 ~~~  196 (406)
                      ..+
T Consensus       165 ~E~  167 (326)
T PF13449_consen  165 MES  167 (326)
T ss_pred             ECc
Confidence            654

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=96.99  E-value=0.041  Score=56.50  Aligned_cols=184  Identities=15%  Similarity=0.160  Sum_probs=107.2

Q ss_pred             ceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcc-eEEEEeCCCCcEEEEeC
Q 015463           72 ESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRP-LGLRFDKKTGDLYIADA  150 (406)
Q Consensus        72 e~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~gi~~d~~~g~L~Vad~  150 (406)
                      -+..+.|+.+.|..++.|+.+..|..+.++....-...                     ..| ..+.|.| .|..++..+
T Consensus       455 yg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH---------------------~~PVwdV~F~P-~GyYFatas  512 (707)
T KOG0263|consen  455 YGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGH---------------------LAPVWDVQFAP-RGYYFATAS  512 (707)
T ss_pred             eeeeecccccceeeccCCcceeeeecccceeEEEecCC---------------------CcceeeEEecC-CceEEEecC
Confidence            44557788887777888898888887754433221110                     113 3456776 554443333


Q ss_pred             CC---cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463          151 YF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK  227 (406)
Q Consensus       151 ~~---gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  227 (406)
                      +.   .||..|.. .-.+.++.     .+..+.++.++|+.+.-+|.++                               
T Consensus       513 ~D~tArLWs~d~~-~PlRifag-----hlsDV~cv~FHPNs~Y~aTGSs-------------------------------  555 (707)
T KOG0263|consen  513 HDQTARLWSTDHN-KPLRIFAG-----HLSDVDCVSFHPNSNYVATGSS-------------------------------  555 (707)
T ss_pred             CCceeeeeecccC-Cchhhhcc-----cccccceEEECCcccccccCCC-------------------------------
Confidence            33   24444331 11222221     2456778899999877666543                               


Q ss_pred             CCCeEEEEeCCCCeEEEecccCCCc-ceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecC---CCCCCceEEC
Q 015463          228 DTGRVLKYDPTTKQTTVLLRNLQFP-NGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAIL---PGYPDNVRTN  303 (406)
Q Consensus       228 ~~g~l~~~d~~t~~~~~~~~~~~~~-ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l---~g~pd~i~~d  303 (406)
                       +-.+-.+|-.+|....+..+...+ ..+++||+|++| .+....+.|..+++.+.     +.+..+   .+.-..+.++
T Consensus       556 -D~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~L-aSg~ed~~I~iWDl~~~-----~~v~~l~~Ht~ti~SlsFS  628 (707)
T KOG0263|consen  556 -DRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYL-ASGDEDGLIKIWDLANG-----SLVKQLKGHTGTIYSLSFS  628 (707)
T ss_pred             -CceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceE-eecccCCcEEEEEcCCC-----cchhhhhcccCceeEEEEe
Confidence             223555666666555555444333 578999999876 55555677777777542     112111   2334557788


Q ss_pred             CCCCEEEEEccCCcchhh
Q 015463          304 EKGEFWVAIHCRRSLYSH  321 (406)
Q Consensus       304 ~~G~lwv~~~~~~~~~~~  321 (406)
                      .+|++.|+.....++.+|
T Consensus       629 ~dg~vLasgg~DnsV~lW  646 (707)
T KOG0263|consen  629 RDGNVLASGGADNSVRLW  646 (707)
T ss_pred             cCCCEEEecCCCCeEEEE
Confidence            999999998777666554

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=96.97  E-value=0.077  Score=54.58  Aligned_cols=157  Identities=13%  Similarity=0.108  Sum_probs=92.4

Q ss_pred             CCcceEEEEeCCCCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccc
Q 015463          130 CGRPLGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKEN  208 (406)
Q Consensus       130 ~~~p~gi~~d~~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~  208 (406)
                      +|..+|..|.| +.++.+..+. ..+..+..++....+....    ...-+.++.+.|.| +||++.+            
T Consensus       451 ~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~G----H~~PVwdV~F~P~G-yYFatas------------  512 (707)
T KOG0263|consen  451 SGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKG----HLAPVWDVQFAPRG-YYFATAS------------  512 (707)
T ss_pred             CCceeeeeecc-cccceeeccCCcceeeeecccceeEEEecC----CCcceeeEEecCCc-eEEEecC------------
Confidence            56568999999 6777766554 4444455444433222221    11225667788887 5666554            


Q ss_pred             ccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCccee
Q 015463          209 IPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLE  288 (406)
Q Consensus       209 ~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~  288 (406)
                                       +..+.+||..|-. .-.+.++..+....++.+.|+..++ .++.....+..++...  ....+
T Consensus       513 -----------------~D~tArLWs~d~~-~PlRifaghlsDV~cv~FHPNs~Y~-aTGSsD~tVRlWDv~~--G~~VR  571 (707)
T KOG0263|consen  513 -----------------HDQTARLWSTDHN-KPLRIFAGHLSDVDCVSFHPNSNYV-ATGSSDRTVRLWDVST--GNSVR  571 (707)
T ss_pred             -----------------CCceeeeeecccC-CchhhhcccccccceEEECCccccc-ccCCCCceEEEEEcCC--CcEEE
Confidence                             3445678887763 5556667777777889999987643 4444444455555432  23456


Q ss_pred             eeecCCCCCCceEECCCCCEEEEEccCCcchhhhhhc
Q 015463          289 AFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMAL  325 (406)
Q Consensus       289 ~~~~l~g~pd~i~~d~~G~lwv~~~~~~~~~~~~~~~  325 (406)
                      +|..-.+--..+++++.|+..++....+.+..|.+..
T Consensus       572 iF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~  608 (707)
T KOG0263|consen  572 IFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLAN  608 (707)
T ss_pred             EecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCC
Confidence            6643222234577889997666665555555544443

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=96.94  E-value=0.29  Score=47.06  Aligned_cols=151  Identities=8%  Similarity=-0.029  Sum_probs=89.1

Q ss_pred             ceEEEEeCCCCcEEEEe-CCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccc
Q 015463          133 PLGLRFDKKTGDLYIAD-AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPL  211 (406)
Q Consensus       133 p~gi~~d~~~g~L~Vad-~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~  211 (406)
                      ..-|.++| +++..++. ...-+..+|.++|.........   -...+.+.+.-+||.=+++.+                
T Consensus       272 V~yi~wSP-DdryLlaCg~~e~~~lwDv~tgd~~~~y~~~---~~~S~~sc~W~pDg~~~V~Gs----------------  331 (519)
T KOG0293|consen  272 VSYIMWSP-DDRYLLACGFDEVLSLWDVDTGDLRHLYPSG---LGFSVSSCAWCPDGFRFVTGS----------------  331 (519)
T ss_pred             eEEEEECC-CCCeEEecCchHheeeccCCcchhhhhcccC---cCCCcceeEEccCCceeEecC----------------
Confidence            34678999 55544443 3345888899888765443221   123456677788886666643                


Q ss_pred             cccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccC--CCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceee
Q 015463          212 QLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNL--QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEA  289 (406)
Q Consensus       212 ~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~--~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~  289 (406)
                                      +++.++.+|.+......+ ++.  +....+++++||+.++.... ..+|..|+....   ...-
T Consensus       332 ----------------~dr~i~~wdlDgn~~~~W-~gvr~~~v~dlait~Dgk~vl~v~~-d~~i~l~~~e~~---~dr~  390 (519)
T KOG0293|consen  332 ----------------PDRTIIMWDLDGNILGNW-EGVRDPKVHDLAITYDGKYVLLVTV-DKKIRLYNREAR---VDRG  390 (519)
T ss_pred             ----------------CCCcEEEecCCcchhhcc-cccccceeEEEEEcCCCcEEEEEec-ccceeeechhhh---hhhc
Confidence                            245677788775433222 222  23457899999999988764 578888876531   0010


Q ss_pred             eecCCCCCCceEECCCCCEEEEEccCCcchhhhhh
Q 015463          290 FAILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMA  324 (406)
Q Consensus       290 ~~~l~g~pd~i~~d~~G~lwv~~~~~~~~~~~~~~  324 (406)
                      .+.....-..+.++.+|++.+..-.......+.+.
T Consensus       391 lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~  425 (519)
T KOG0293|consen  391 LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLE  425 (519)
T ss_pred             cccccCceeEEEEcCCCcEEEEEcccCeeEEeecc
Confidence            11111113456678899987776655555554444

>PRK01742 tolB translocation protein TolB; Provisional

Probab=96.94  E-value=0.19  Score=50.27  Aligned_cols=117  Identities=9%  Similarity=0.022  Sum_probs=66.1

Q ss_pred             cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCe
Q 015463          153 GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGR  231 (406)
Q Consensus       153 gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~  231 (406)
                      .|+.+|.++...+.+... .    ....+....+||+ |.++..                              ......
T Consensus       185 ~i~i~d~dg~~~~~lt~~-~----~~v~~p~wSPDG~~la~~s~------------------------------~~~~~~  229 (429)
T PRK01742        185 EVRVADYDGFNQFIVNRS-S----QPLMSPAWSPDGSKLAYVSF------------------------------ENKKSQ  229 (429)
T ss_pred             EEEEECCCCCCceEeccC-C----CccccceEcCCCCEEEEEEe------------------------------cCCCcE
Confidence            466777766554443221 1    1345678899995 433321                              111246


Q ss_pred             EEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCC--CeEEEEEeeCCCCcceeeeecCCCCCCceEECCCCC
Q 015463          232 VLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE  307 (406)
Q Consensus       232 l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~--~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~  307 (406)
                      |+.+|..+++.+.+...-.....++++||++.++++....  -.||.+++++..   ...+....+.......++||+
T Consensus       230 i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~wSpDG~  304 (429)
T PRK01742        230 LVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT---PSQLTSGAGNNTEPSWSPDGQ  304 (429)
T ss_pred             EEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC---eEeeccCCCCcCCEEECCCCC
Confidence            9999998887655543222334688999999888765323  357777765432   222222222233456677777

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=96.94  E-value=0.33  Score=47.01  Aligned_cols=142  Identities=13%  Similarity=0.208  Sum_probs=80.1

Q ss_pred             ceEEEEeCCCCcEEEEeCCCcEEEE-eCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccc
Q 015463          133 PLGLRFDKKTGDLYIADAYFGLMKV-GPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPL  211 (406)
Q Consensus       133 p~gi~~d~~~g~L~Vad~~~gl~~~-d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~  211 (406)
                      ..++...+ .|..++..+..|-+.| |.+++..-..... + ...-.....++++||.|+.+-.                
T Consensus       306 V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~-~-~s~v~~ts~~fHpDgLifgtgt----------------  366 (506)
T KOG0289|consen  306 VTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSD-E-TSDVEYTSAAFHPDGLIFGTGT----------------  366 (506)
T ss_pred             ceeeeecc-CCcEEEEecCCceEEEEEccCCcEEEEEee-c-cccceeEEeeEcCCceEEeccC----------------
Confidence            45778888 7887777777666655 4444432221111 1 1122356789999998877643                


Q ss_pred             cccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCc-ceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeee
Q 015463          212 QLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFP-NGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAF  290 (406)
Q Consensus       212 ~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~-ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~  290 (406)
                                      .+|.|-.||.+.+....-..+...+ ..|+++.+| +.+++++..+.|..+++.-  ......|
T Consensus       367 ----------------~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRK--l~n~kt~  427 (506)
T KOG0289|consen  367 ----------------PDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRK--LKNFKTI  427 (506)
T ss_pred             ----------------CCceEEEEEcCCccccccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehh--hccccee
Confidence                            3566777777654421112222222 458888666 4556666666788888752  2233333


Q ss_pred             ecCCCC-CCceEECCCCCEEEEE
Q 015463          291 AILPGY-PDNVRTNEKGEFWVAI  312 (406)
Q Consensus       291 ~~l~g~-pd~i~~d~~G~lwv~~  312 (406)
                      ..-... ...+.+|..|.+.+..
T Consensus       428 ~l~~~~~v~s~~fD~SGt~L~~~  450 (506)
T KOG0289|consen  428 QLDEKKEVNSLSFDQSGTYLGIA  450 (506)
T ss_pred             eccccccceeEEEcCCCCeEEee
Confidence            211111 2346789999877665

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.94  E-value=0.57  Score=47.71  Aligned_cols=53  Identities=9%  Similarity=0.120  Sum_probs=31.9

Q ss_pred             ceEEEEEECC-CCCEEEEEECCCCCe------eeceeEEEEeCCEEEEecCCCCeEEEEeC
Q 015463          352 LHAMAVKYSP-EGKILQVLEDSKGKV------VKAISEVEEKDGKLWMGSVLMPFVAVYDL  405 (406)
Q Consensus       352 ~~~~v~~~d~-~g~~~~~~~~~~g~~------~~~~s~~~~~~g~Ly~Gs~~~~~i~~~~~  405 (406)
                      ..+.+.++|. +|+++..........      ....+.+...++.||+|+. ...|.-+|.
T Consensus       364 ~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~-dG~l~ald~  423 (488)
T cd00216         364 GKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAA-DGYFRAFDA  423 (488)
T ss_pred             CceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECC-CCeEEEEEC
Confidence            3456888884 588888875431110      0112344556789999985 566666664

The alignment model contains an 8-bladed beta-propeller.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.93  E-value=0.07  Score=49.27  Aligned_cols=168  Identities=13%  Similarity=0.168  Sum_probs=85.2

Q ss_pred             eccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCccccCCCCCcccccccCC--cCCcceEEE
Q 015463           63 KFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEH--ICGRPLGLR  137 (406)
Q Consensus        63 ~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~gi~  137 (406)
                      +....+.-||+|.+-.+|+...+.=.+.+++.+.-+   .+......  .    ...        ....  .+| --|++
T Consensus       123 iPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~--~----i~L--------~~~~k~N~G-fEGlA  187 (316)
T COG3204         123 IPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQ--K----IPL--------GTTNKKNKG-FEGLA  187 (316)
T ss_pred             ecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccce--E----Eec--------cccCCCCcC-ceeee
Confidence            334456778888887666522333345666666433   21111110  0    000        0000  122 35899


Q ss_pred             EeCCCCcEEEEeCCC--cEEEEeCCCCeEEEcccccCC----cccccccceEEcC-CCCEEEEeCCCchhhhcccccccc
Q 015463          138 FDKKTGDLYIADAYF--GLMKVGPEGGLATSLATEAEG----VPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKENIP  210 (406)
Q Consensus       138 ~d~~~g~L~Vad~~~--gl~~~d~~~~~~~~l~~~~~~----~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~  210 (406)
                      .|+.+++||++-..+  +|+.++........-......    .-...+.++.+++ .|++++=.                
T Consensus       188 ~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS----------------  251 (316)
T COG3204         188 WDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLS----------------  251 (316)
T ss_pred             cCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEe----------------
Confidence            999889999998764  677776322111110000000    0122344455553 34444432                


Q ss_pred             ccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEe---------cccCCCcceEEEecCCCEEEEEeCCCCeEEEEEe
Q 015463          211 LQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVL---------LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWL  279 (406)
Q Consensus       211 ~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~---------~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~  279 (406)
                                      .+...|..+|.+..-...+         ...++.+.||+++++|....++|  .+..+++..
T Consensus       252 ----------------~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSE--Pnlfy~F~~  311 (316)
T COG3204         252 ----------------DESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSE--PNLFYRFTP  311 (316)
T ss_pred             ----------------cCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEec--CCcceeccc
Confidence                            2235677777664323222         23456788999998887555555  357777764

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=96.91  E-value=0.16  Score=50.02  Aligned_cols=151  Identities=15%  Similarity=0.068  Sum_probs=95.2

Q ss_pred             cCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC
Q 015463           65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (406)
Q Consensus        65 ~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g  143 (406)
                      ..++-.|..|+.. .+. +|+|+..+.|++=+-+ .++.....                     + ...-+|++..+ ..
T Consensus       326 Pe~~G~iRtv~e~-~~d-i~vGTtrN~iL~Gt~~~~f~~~v~g---------------------h-~delwgla~hp-s~  380 (626)
T KOG2106|consen  326 PEQFGPIRTVAEG-KGD-ILVGTTRNFILQGTLENGFTLTVQG---------------------H-GDELWGLATHP-SK  380 (626)
T ss_pred             chhcCCeeEEecC-CCc-EEEeeccceEEEeeecCCceEEEEe---------------------c-ccceeeEEcCC-Ch
Confidence            3444456666664 345 9999988878766544 33333221                     1 12357899998 67


Q ss_pred             cEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCC
Q 015463          144 DLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSP  222 (406)
Q Consensus       144 ~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  222 (406)
                      ++++.... +-+..++ + .+. .+.....    ....++++++.|.+-+++.                           
T Consensus       381 ~q~~T~gqdk~v~lW~-~-~k~-~wt~~~~----d~~~~~~fhpsg~va~Gt~---------------------------  426 (626)
T KOG2106|consen  381 NQLLTCGQDKHVRLWN-D-HKL-EWTKIIE----DPAECADFHPSGVVAVGTA---------------------------  426 (626)
T ss_pred             hheeeccCcceEEEcc-C-Cce-eEEEEec----CceeEeeccCcceEEEeec---------------------------
Confidence            77776655 4455565 2 221 1111111    1245678889886666654                           


Q ss_pred             CcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463          223 IKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  281 (406)
Q Consensus       223 ~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g  281 (406)
                            .|+.+.+|.++.....+...-..-+.+.++|||.++-+.. -.+.|+.|.++.
T Consensus       427 ------~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs-~d~~iyiy~Vs~  478 (626)
T KOG2106|consen  427 ------TGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGS-HDNHIYIYRVSA  478 (626)
T ss_pred             ------cceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEec-CCCeEEEEEECC
Confidence                  3899999999876665554444557899999999887764 467888888763

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.89  E-value=0.15  Score=48.45  Aligned_cols=110  Identities=17%  Similarity=0.266  Sum_probs=64.8

Q ss_pred             CcEEEEeCC-----CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCC-CEEEEeCCCchhhhcccccccccccccc
Q 015463          143 GDLYIADAY-----FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRQMQKENIPLQLCSS  216 (406)
Q Consensus       143 g~L~Vad~~-----~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~~e  216 (406)
                      .++||.|..     .+++.+|.+++++.=...      ..+.-.+++++|| .+|++++-  +.|..+            
T Consensus         3 ~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi~------~g~~~~~~~spdgk~~y~a~T~--~sR~~r------------   62 (342)
T PF06433_consen    3 HRVYVQDPVFFHMTSRVYVIDADSGKLLGMID------TGFLGNVALSPDGKTIYVAETF--YSRGTR------------   62 (342)
T ss_dssp             TEEEEEE-GGGGSSEEEEEEETTTTEEEEEEE------EESSEEEEE-TTSSEEEEEEEE--EEETTE------------
T ss_pred             cEEEEECCccccccceEEEEECCCCcEEEEee------cccCCceeECCCCCEEEEEEEE--Eecccc------------
Confidence            567777763     368899988876432111      1233347788888 57776532  111111            


Q ss_pred             CCCCCCCcccCCCCeEEEEeCCCCeEEE--ecc------cCCCcceEEEecCCCEEEEEeCC-CCeEEEEEeeC
Q 015463          217 LNDPSPIKITKDTGRVLKYDPTTKQTTV--LLR------NLQFPNGLSLSKDKSFFVFCEGS-VGRLHKYWLIG  281 (406)
Q Consensus       217 ~~~~~~~~~~~~~g~l~~~d~~t~~~~~--~~~------~~~~~ngi~l~~d~~~l~v~~t~-~~~i~~~~~~g  281 (406)
                               +..+--|-.||.+|-+.+.  .+.      .....+-.+++.|++++||.+.+ ...|.++++..
T Consensus        63 ---------G~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~  127 (342)
T PF06433_consen   63 ---------GERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAA  127 (342)
T ss_dssp             ---------EEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTT
T ss_pred             ---------ccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCC
Confidence                     3333447889998875432  221      13456778999999999998754 35788888763

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PRK04043 tolB translocation protein TolB; Provisional

Probab=96.86  E-value=0.58  Score=46.63  Aligned_cols=137  Identities=17%  Similarity=0.193  Sum_probs=82.8

Q ss_pred             eEEEEeCCCCc--EEEEeCC---CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCC-CEEEEeCCCchhhhccccc
Q 015463          134 LGLRFDKKTGD--LYIADAY---FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRQMQKE  207 (406)
Q Consensus       134 ~gi~~d~~~g~--L~Vad~~---~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG-~ly~t~~~~~~~~~~~~~~  207 (406)
                      ..-.+++ +|+  +++....   ..|+.+|..+++.+.+... .+.    .....+.+|| .+.++.+.           
T Consensus       191 ~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~-~g~----~~~~~~SPDG~~la~~~~~-----------  253 (419)
T PRK04043        191 IFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS-QGM----LVVSDVSKDGSKLLLTMAP-----------  253 (419)
T ss_pred             EeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC-CCc----EEeeEECCCCCEEEEEEcc-----------
Confidence            3456787 554  5654433   2499999999987776532 221    1124578888 46666532           


Q ss_pred             cccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCC--CeEEEEEeeCCCCc
Q 015463          208 NIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAG  285 (406)
Q Consensus       208 ~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~--~~i~~~~~~g~~~~  285 (406)
                                         .+...|+.+|.++++.+.+...-.......++|||+.++++....  ..|+++++++.+. 
T Consensus       254 -------------------~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~-  313 (419)
T PRK04043        254 -------------------KGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV-  313 (419)
T ss_pred             -------------------CCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe-
Confidence                               123579999998888777654322223456999999888876432  3788888875332 


Q ss_pred             ceeeeecCCCCCCceEECCCCCEEEE
Q 015463          286 NLEAFAILPGYPDNVRTNEKGEFWVA  311 (406)
Q Consensus       286 ~~~~~~~l~g~pd~i~~d~~G~lwv~  311 (406)
                        +.+... |. .+...++||+..+-
T Consensus       314 --~rlt~~-g~-~~~~~SPDG~~Ia~  335 (419)
T PRK04043        314 --EQVVFH-GK-NNSSVSTYKNYIVY  335 (419)
T ss_pred             --EeCccC-CC-cCceECCCCCEEEE
Confidence              222111 21 23467888884433

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=96.84  E-value=0.29  Score=48.41  Aligned_cols=202  Identities=14%  Similarity=0.143  Sum_probs=105.3

Q ss_pred             cccCcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc
Q 015463           67 QIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (406)
Q Consensus        67 ~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~  144 (406)
                      +-+.-.++.+.+.|+.+.+-+.+.....+|.+  .+.++.........+.+.+++.+     +.+|     -.+.|.+.+
T Consensus       213 E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia-----~lt~-----g~whP~~k~  282 (641)
T KOG0772|consen  213 ETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIA-----ELTC-----GCWHPDNKE  282 (641)
T ss_pred             cccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCcee-----eeec-----cccccCccc
Confidence            34455678888888877777777777778877  55555544433222222222211     1111     134444455


Q ss_pred             EEEEeCCCc-EEEEeCC--CCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCC
Q 015463          145 LYIADAYFG-LMKVGPE--GGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPS  221 (406)
Q Consensus       145 L~Vad~~~g-l~~~d~~--~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~  221 (406)
                      .++..++.| +..++..  ..+.+++.....+..-..+..-+.++||+++.+                            
T Consensus       283 ~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAa----------------------------  334 (641)
T KOG0772|consen  283 EFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAA----------------------------  334 (641)
T ss_pred             ceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhh----------------------------
Confidence            565555533 4444443  233444433323322234555678889988444                            


Q ss_pred             CCcccCCCCeEEEEeCCCCeEE--Eec----ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCC
Q 015463          222 PIKITKDTGRVLKYDPTTKQTT--VLL----RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPG  295 (406)
Q Consensus       222 ~~~~~~~~g~l~~~d~~t~~~~--~~~----~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g  295 (406)
                          +..+|.|-.++.....+.  ...    ........|++|.||+.| .+-.....+..+++...+.. ..++.+++.
T Consensus       335 ----gc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~L-lSRg~D~tLKvWDLrq~kkp-L~~~tgL~t  408 (641)
T KOG0772|consen  335 ----GCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYL-LSRGFDDTLKVWDLRQFKKP-LNVRTGLPT  408 (641)
T ss_pred             ----cccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchh-hhccCCCceeeeeccccccc-hhhhcCCCc
Confidence                233566777764322111  111    112234679999999866 44445567777777643211 112223321


Q ss_pred             -CC-CceEECCCCCEEEEE
Q 015463          296 -YP-DNVRTNEKGEFWVAI  312 (406)
Q Consensus       296 -~p-d~i~~d~~G~lwv~~  312 (406)
                       +| .+.+++++-.|.++.
T Consensus       409 ~~~~tdc~FSPd~kli~TG  427 (641)
T KOG0772|consen  409 PFPGTDCCFSPDDKLILTG  427 (641)
T ss_pred             cCCCCccccCCCceEEEec
Confidence             22 356788888876664

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=96.83  E-value=0.46  Score=45.06  Aligned_cols=146  Identities=18%  Similarity=0.238  Sum_probs=92.4

Q ss_pred             eEEEEeCCCCcEEEEeCC--CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccc
Q 015463          134 LGLRFDKKTGDLYIADAY--FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPL  211 (406)
Q Consensus       134 ~gi~~d~~~g~L~Vad~~--~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~  211 (406)
                      ..|...+ +|..|+..+.  ..|..+|++++....+....    +....-+-..+||...|+.+-               
T Consensus       199 tsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g----lgg~slLkwSPdgd~lfaAt~---------------  258 (445)
T KOG2139|consen  199 TSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLIPKG----LGGFSLLKWSPDGDVLFAATC---------------  258 (445)
T ss_pred             eEEEEcC-CCCEEeecccCcceEEEEcCCCCCcccccccC----CCceeeEEEcCCCCEEEEecc---------------
Confidence            4678887 7888887665  45999999998776654211    123445678999988887642               


Q ss_pred             cccccCCCCCCCcccCCCCeEEEEeCCCCe--EEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCC-----C
Q 015463          212 QLCSSLNDPSPIKITKDTGRVLKYDPTTKQ--TTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEK-----A  284 (406)
Q Consensus       212 ~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~--~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~-----~  284 (406)
                                       + +++++=..+..  .+...-+-....+-+.+|+|++++++-...-+|+.....+..     .
T Consensus       259 -----------------d-avfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~  320 (445)
T KOG2139|consen  259 -----------------D-AVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRP  320 (445)
T ss_pred             -----------------c-ceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCc
Confidence                             1 24443322222  222222222556778999999999998888899998776531     1


Q ss_pred             c---ceeeeecC------------CCCCCceEECCCCCEEEEEccCCc
Q 015463          285 G---NLEAFAIL------------PGYPDNVRTNEKGEFWVAIHCRRS  317 (406)
Q Consensus       285 ~---~~~~~~~l------------~g~pd~i~~d~~G~lwv~~~~~~~  317 (406)
                      +   ...+.+++            .|-+..++.|+.|...+.+..+..
T Consensus       321 ~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~  368 (445)
T KOG2139|consen  321 QSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS  368 (445)
T ss_pred             ccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence            1   11122232            244667899999998888877644

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=96.80  E-value=0.098  Score=51.55  Aligned_cols=225  Identities=15%  Similarity=0.153  Sum_probs=116.0

Q ss_pred             cCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC----ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeC
Q 015463           65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL----KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK  140 (406)
Q Consensus        65 ~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~  140 (406)
                      .++-....++++|+.|-.+++|+.|-.|..||-.    ....|....     .|+              +.....+.+.+
T Consensus       164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~-----P~E--------------~h~i~sl~ys~  224 (641)
T KOG0772|consen  164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQ-----PCE--------------THQINSLQYSV  224 (641)
T ss_pred             cCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccC-----ccc--------------ccccceeeecC
Confidence            3444455788999999889999999999888854    233332211     121              23345677777


Q ss_pred             CCCc-EEEEeCCCcEEEEeCCCCeEEEcccccC------Cc--ccccccceEEcCCC-CEEEEeCCCchhhhcccccccc
Q 015463          141 KTGD-LYIADAYFGLMKVGPEGGLATSLATEAE------GV--PLRFTNDLDIDDEG-NVYFTDSSTNYQRRQMQKENIP  210 (406)
Q Consensus       141 ~~g~-L~Vad~~~gl~~~d~~~~~~~~l~~~~~------~~--~~~~~~~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~  210 (406)
                       .|+ |.|.........+|.++-++..+.....      ..  -.-.+++.+..++. ..++|.+.              
T Consensus       225 -Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~--------------  289 (641)
T KOG0772|consen  225 -TGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSY--------------  289 (641)
T ss_pred             -CCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecC--------------
Confidence             554 4444433456677777654433221100      00  00122333344432 34444321              


Q ss_pred             ccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccC-----CCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCc
Q 015463          211 LQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNL-----QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAG  285 (406)
Q Consensus       211 ~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~-----~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~  285 (406)
                                      .++-|+|-++....+..++....     -.+...++++|++. +.+....+.|-.++. +...-
T Consensus       290 ----------------DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~-iAagc~DGSIQ~W~~-~~~~v  351 (641)
T KOG0772|consen  290 ----------------DGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL-IAAGCLDGSIQIWDK-GSRTV  351 (641)
T ss_pred             ----------------CCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcch-hhhcccCCceeeeec-CCccc
Confidence                            11223444444334555553222     12456779999975 455555555555543 33333


Q ss_pred             ceeeee---cCCCC-CCceEECCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccce
Q 015463          286 NLEAFA---ILPGY-PDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAK  341 (406)
Q Consensus       286 ~~~~~~---~l~g~-pd~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  341 (406)
                      +.....   +.+|. ...|.++.+|++.++-......-+|.|..+...-.....|+.+..
T Consensus       352 ~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~  411 (641)
T KOG0772|consen  352 RPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFP  411 (641)
T ss_pred             ccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCC
Confidence            322222   23321 346788999998887655555555555555444444445555444

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=96.80  E-value=0.36  Score=43.24  Aligned_cols=174  Identities=13%  Similarity=0.111  Sum_probs=96.3

Q ss_pred             ceEEEcCCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463           72 ESMAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (406)
Q Consensus        72 e~i~~d~~g~~ly~g~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va  148 (406)
                      ..+-+.-+|+.-.+...+..|..|++.   -++++...                       +...+..+...++-.+--+
T Consensus        21 ~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsgh-----------------------G~EVlD~~~s~Dnskf~s~   77 (307)
T KOG0316|consen   21 RAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGH-----------------------GHEVLDAALSSDNSKFASC   77 (307)
T ss_pred             EEEEEccCCCEEEEcCCCceEEeecccccceeeeecCC-----------------------CceeeeccccccccccccC
Confidence            445567789955555566677777876   23333211                       2224444444422233333


Q ss_pred             eCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCC
Q 015463          149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKD  228 (406)
Q Consensus       149 d~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  228 (406)
                      ...+-+..+|..+|++..-....    ...+|.+.+..+-.+.++.+-                                
T Consensus        78 GgDk~v~vwDV~TGkv~Rr~rgH----~aqVNtV~fNeesSVv~Sgsf--------------------------------  121 (307)
T KOG0316|consen   78 GGDKAVQVWDVNTGKVDRRFRGH----LAQVNTVRFNEESSVVASGSF--------------------------------  121 (307)
T ss_pred             CCCceEEEEEcccCeeeeecccc----cceeeEEEecCcceEEEeccc--------------------------------
Confidence            33356999999998764322221    234788888877777776542                                


Q ss_pred             CCeEEEEeCCCCeEEEec---ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCC-ceEECC
Q 015463          229 TGRVLKYDPTTKQTTVLL---RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPD-NVRTNE  304 (406)
Q Consensus       229 ~g~l~~~d~~t~~~~~~~---~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd-~i~~d~  304 (406)
                      +..+..+|=.....+.+.   +.......|.++   +..+++.+..+++..|++.-   |  ..+.+.-|.|- .+.+.+
T Consensus       122 D~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~---G--~l~sDy~g~pit~vs~s~  193 (307)
T KOG0316|consen  122 DSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRK---G--TLSSDYFGHPITSVSFSK  193 (307)
T ss_pred             cceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeec---c--eeehhhcCCcceeEEecC
Confidence            234666666555554432   111122233332   23557777778999999762   2  23334445554 467889


Q ss_pred             CCCEEEEE
Q 015463          305 KGEFWVAI  312 (406)
Q Consensus       305 ~G~lwv~~  312 (406)
                      +|+.-++.
T Consensus       194 d~nc~La~  201 (307)
T KOG0316|consen  194 DGNCSLAS  201 (307)
T ss_pred             CCCEEEEe
Confidence            99955443

>PTZ00421 coronin; Provisional

Probab=96.79  E-value=0.4  Score=48.84  Aligned_cols=160  Identities=12%  Similarity=0.113  Sum_probs=89.6

Q ss_pred             CcceEEEcCCC-CeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463           70 GPESMAFDPLG-RGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (406)
Q Consensus        70 gpe~i~~d~~g-~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va  148 (406)
                      ...++++.+++ +.+.+++.|+.|..||...-.......                    .......++++.+ +|.+.++
T Consensus       127 ~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~--------------------~h~~~V~sla~sp-dG~lLat  185 (493)
T PTZ00421        127 KVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK--------------------CHSDQITSLEWNL-DGSLLCT  185 (493)
T ss_pred             cEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc--------------------CCCCceEEEEEEC-CCCEEEE
Confidence            44678888864 568889999999999976211111110                    0123356889998 6776554


Q ss_pred             eC-CCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463          149 DA-YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK  227 (406)
Q Consensus       149 d~-~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  227 (406)
                      .. .+.|..+|+.+++...-.....+   .....+...+++...++...+                            ..
T Consensus       186 gs~Dg~IrIwD~rsg~~v~tl~~H~~---~~~~~~~w~~~~~~ivt~G~s----------------------------~s  234 (493)
T PTZ00421        186 TSKDKKLNIIDPRDGTIVSSVEAHAS---AKSQRCLWAKRKDLIITLGCS----------------------------KS  234 (493)
T ss_pred             ecCCCEEEEEECCCCcEEEEEecCCC---CcceEEEEcCCCCeEEEEecC----------------------------CC
Confidence            44 45688999887754221111111   112234455566566654211                            11


Q ss_pred             CCCeEEEEeCCCCeEEEecccCCC---cceEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463          228 DTGRVLKYDPTTKQTTVLLRNLQF---PNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  281 (406)
Q Consensus       228 ~~g~l~~~d~~t~~~~~~~~~~~~---~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g  281 (406)
                      .++.+..||..+.........+..   .....+++|++.++++..+.+.|..|++..
T Consensus       235 ~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~  291 (493)
T PTZ00421        235 QQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN  291 (493)
T ss_pred             CCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence            246688888764321111111111   122357789988887765567788888764

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=96.78  E-value=0.44  Score=44.75  Aligned_cols=145  Identities=19%  Similarity=0.196  Sum_probs=75.8

Q ss_pred             CCcceEEEEeCCCCcEEEEeCCCcEEEEeCCCCeEE----------Ec-ccc--cCCcccccccceEEcCCCCEEEEeCC
Q 015463          130 CGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLAT----------SL-ATE--AEGVPLRFTNDLDIDDEGNVYFTDSS  196 (406)
Q Consensus       130 ~~~p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~----------~l-~~~--~~~~~~~~~~~l~~d~dG~ly~t~~~  196 (406)
                      ..+|.|++..  .+.||+++. ..|+++-.......          .+ ...  ..|  .-.+.++++ .++.+||.++-
T Consensus        48 F~r~MGl~~~--~~~l~~~t~-~qiw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~TG--didiHdia~-~~~~l~fVNT~  121 (335)
T TIGR03032        48 FPRPMGLAVS--PQSLTLGTR-YQLWRFANVDNLLPAGQTHPGYDRLYVPRASYVTG--DIDAHDLAL-GAGRLLFVNTL  121 (335)
T ss_pred             cCccceeeee--CCeEEEEEc-ceeEEcccccccccccccCCCCCeEEeeeeeeecc--Ccchhheee-cCCcEEEEECc
Confidence            5679999987  478999986 47888821111110          00 000  011  124567888 57788887642


Q ss_pred             CchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEe----------cccCCCcceEEEecCCCEEEE
Q 015463          197 TNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVL----------LRNLQFPNGLSLSKDKSFFVF  266 (406)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~----------~~~~~~~ngi~l~~d~~~l~v  266 (406)
                                                      -..|..+++. -.+...          .+.-..-||+|+. |++--||
T Consensus       122 --------------------------------fSCLatl~~~-~SF~P~WkPpFIs~la~eDRCHLNGlA~~-~g~p~yV  167 (335)
T TIGR03032       122 --------------------------------FSCLATVSPD-YSFVPLWKPPFISKLAPEDRCHLNGMALD-DGEPRYV  167 (335)
T ss_pred             --------------------------------ceeEEEECCC-CccccccCCccccccCccCceeecceeee-CCeEEEE
Confidence                                            1346666654 333222          1223456999995 7878887


Q ss_pred             EeCCCC---eEEEEEee-CC---CCcceeeeecCCCCCCceEECCCCCEEEEEccC
Q 015463          267 CEGSVG---RLHKYWLI-GE---KAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCR  315 (406)
Q Consensus       267 ~~t~~~---~i~~~~~~-g~---~~~~~~~~~~l~g~pd~i~~d~~G~lwv~~~~~  315 (406)
                      +.-+..   .-||=... |.   ...+-+++.+.-.+|.+-+. -+|++|+.....
T Consensus       168 Ta~~~sD~~~gWR~~~~~gG~vidv~s~evl~~GLsmPhSPRW-hdgrLwvldsgt  222 (335)
T TIGR03032       168 TALSQSDVADGWREGRRDGGCVIDIPSGEVVASGLSMPHSPRW-YQGKLWLLNSGR  222 (335)
T ss_pred             EEeeccCCcccccccccCCeEEEEeCCCCEEEcCccCCcCCcE-eCCeEEEEECCC
Confidence            754332   22221111 00   00111233322234555555 478999988654

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=96.78  E-value=0.46  Score=44.23  Aligned_cols=178  Identities=15%  Similarity=0.084  Sum_probs=103.0

Q ss_pred             cceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC---cEEE
Q 015463           71 PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG---DLYI  147 (406)
Q Consensus        71 pe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g---~L~V  147 (406)
                      --++|+  +|..+-.|+.|.+|..||.....+...                    ..+..++...+.|++ .-   .|.-
T Consensus        46 itavAV--s~~~~aSGssDetI~IYDm~k~~qlg~--------------------ll~HagsitaL~F~~-~~S~shLlS  102 (362)
T KOG0294|consen   46 ITALAV--SGPYVASGSSDETIHIYDMRKRKQLGI--------------------LLSHAGSITALKFYP-PLSKSHLLS  102 (362)
T ss_pred             eeEEEe--cceeEeccCCCCcEEEEeccchhhhcc--------------------eeccccceEEEEecC-Ccchhheee
Confidence            356666  455455677889999998762222111                    111146667777776 33   5666


Q ss_pred             EeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463          148 ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK  227 (406)
Q Consensus       148 ad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  227 (406)
                      |...+.|..++..  ....+... .+-. ..+++|++.|.|.|-++...                               
T Consensus       103 ~sdDG~i~iw~~~--~W~~~~sl-K~H~-~~Vt~lsiHPS~KLALsVg~-------------------------------  147 (362)
T KOG0294|consen  103 GSDDGHIIIWRVG--SWELLKSL-KAHK-GQVTDLSIHPSGKLALSVGG-------------------------------  147 (362)
T ss_pred             ecCCCcEEEEEcC--CeEEeeee-cccc-cccceeEecCCCceEEEEcC-------------------------------
Confidence            6655667777754  33333222 1211 23899999999999888643                               


Q ss_pred             CCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeec--CCCCCCceEECCC
Q 015463          228 DTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI--LPGYPDNVRTNEK  305 (406)
Q Consensus       228 ~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~--l~g~pd~i~~d~~  305 (406)
                       ++.|--+|.-+|+......--..+.-|.+++.|+..++.-  +++|..|.++..     .+|..  .+--+-++.++..
T Consensus       148 -D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~--~~~i~i~q~d~A-----~v~~~i~~~~r~l~~~~l~~  219 (362)
T KOG0294|consen  148 -DQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSG--RNKIDIYQLDNA-----SVFREIENPKRILCATFLDG  219 (362)
T ss_pred             -CceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEe--ccEEEEEecccH-----hHhhhhhccccceeeeecCC
Confidence             2345556666565444433334455688999999777764  568888876532     22221  1222334455555


Q ss_pred             CCEEEEEcc
Q 015463          306 GEFWVAIHC  314 (406)
Q Consensus       306 G~lwv~~~~  314 (406)
                      +.+.||...
T Consensus       220 ~~L~vG~d~  228 (362)
T KOG0294|consen  220 SELLVGGDN  228 (362)
T ss_pred             ceEEEecCC
Confidence            666666543

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.73  E-value=0.33  Score=49.42  Aligned_cols=69  Identities=19%  Similarity=0.298  Sum_probs=42.8

Q ss_pred             CCcEEEEeCCCcEEEEeCCCCeEE-EcccccC---CcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccC
Q 015463          142 TGDLYIADAYFGLMKVGPEGGLAT-SLATEAE---GVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSL  217 (406)
Q Consensus       142 ~g~L~Vad~~~gl~~~d~~~~~~~-~l~~~~~---~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~  217 (406)
                      ++.+|+++....|+.+|.++|+.. .......   ..+......+++..++.+|+++..                     
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~---------------------  119 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFD---------------------  119 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCC---------------------
Confidence            689999988888999999888642 1111100   000001122334334789998743                     


Q ss_pred             CCCCCCcccCCCCeEEEEeCCCCeEE
Q 015463          218 NDPSPIKITKDTGRVLKYDPTTKQTT  243 (406)
Q Consensus       218 ~~~~~~~~~~~~g~l~~~d~~t~~~~  243 (406)
                                  |.|+.+|.+||+..
T Consensus       120 ------------g~v~AlD~~TG~~~  133 (488)
T cd00216         120 ------------GRLVALDAETGKQV  133 (488)
T ss_pred             ------------CeEEEEECCCCCEe
Confidence                        78999999988754

The alignment model contains an 8-bladed beta-propeller.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.70  E-value=0.075  Score=48.18  Aligned_cols=142  Identities=17%  Similarity=0.172  Sum_probs=84.6

Q ss_pred             CCeeEEEecCCEEEEEeCC---ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCCCcEEE
Q 015463           80 GRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMK  156 (406)
Q Consensus        80 g~~ly~g~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~~gl~~  156 (406)
                      |+.+.+|.++|++|.++-+   +.-.+...                    +...-+|   ..|.+.|-+|.++.++.++.
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~--------------------~~vk~~a---~~d~~~glIycgshd~~~ya  119 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVIL--------------------ETVKVRA---QCDFDGGLIYCGSHDGNFYA  119 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeeh--------------------hhhccce---EEcCCCceEEEecCCCcEEE
Confidence            4558889999999998765   21122111                    1111222   23444688899998888999


Q ss_pred             EeCCCCeEEEcccccCCcccccccceEEcC-CCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEE
Q 015463          157 VGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKY  235 (406)
Q Consensus       157 ~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~  235 (406)
                      +|+.+... .+...-.|..+..|   ++++ +|.||++..+                                 |+|++.
T Consensus       120 lD~~~~~c-VykskcgG~~f~sP---~i~~g~~sly~a~t~---------------------------------G~vlav  162 (354)
T KOG4649|consen  120 LDPKTYGC-VYKSKCGGGTFVSP---VIAPGDGSLYAAITA---------------------------------GAVLAV  162 (354)
T ss_pred             ecccccce-EEecccCCceeccc---eecCCCceEEEEecc---------------------------------ceEEEE
Confidence            99986532 22233334333333   6666 8899999864                                 889999


Q ss_pred             eCCCCeEEEec-c---c--CCCcc----eEEE-ecCCCEEEEEeCCCCeEEEEEeeCC
Q 015463          236 DPTTKQTTVLL-R---N--LQFPN----GLSL-SKDKSFFVFCEGSVGRLHKYWLIGE  282 (406)
Q Consensus       236 d~~t~~~~~~~-~---~--~~~~n----gi~l-~~d~~~l~v~~t~~~~i~~~~~~g~  282 (406)
                      ++++.....+. .   +  +..|.    .+.+ .-||..+-+.+. +..|||+..+|+
T Consensus       163 t~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~s-G~qvwr~~t~Gp  219 (354)
T KOG4649|consen  163 TKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDES-GRQVWRPATKGP  219 (354)
T ss_pred             ccCCCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEcCC-CcEEEeecCCCc
Confidence            99887555442 1   1  11221    1211 136766656544 467888877664

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=96.65  E-value=0.062  Score=52.16  Aligned_cols=182  Identities=15%  Similarity=0.171  Sum_probs=105.8

Q ss_pred             CcceEEEcCCCCeeEEEecCCEEEEEeCC--c-eeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEE
Q 015463           70 GPESMAFDPLGRGPYTGVADGRILFWDGL--K-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~  146 (406)
                      +-|.+.+.++++.|.+...+|.|+.+...  . ++.+.                        ..|...+++|+.+...||
T Consensus       305 ~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K------------------------ieG~v~~~~fsSdsk~l~  360 (514)
T KOG2055|consen  305 SMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK------------------------IEGVVSDFTFSSDSKELL  360 (514)
T ss_pred             hhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee------------------------eccEEeeEEEecCCcEEE
Confidence            34677788888866677778888887654  1 11111                        135677889988455677


Q ss_pred             EEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCccc
Q 015463          147 IADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKIT  226 (406)
Q Consensus       147 Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~  226 (406)
                      ++..++.++.+|.....+...-.. +|.  ..-..++...+|. |+++.                               
T Consensus       361 ~~~~~GeV~v~nl~~~~~~~rf~D-~G~--v~gts~~~S~ng~-ylA~G-------------------------------  405 (514)
T KOG2055|consen  361 ASGGTGEVYVWNLRQNSCLHRFVD-DGS--VHGTSLCISLNGS-YLATG-------------------------------  405 (514)
T ss_pred             EEcCCceEEEEecCCcceEEEEee-cCc--cceeeeeecCCCc-eEEec-------------------------------
Confidence            776667899999887654332221 121  1234567777887 55552                               


Q ss_pred             CCCCeEEEEeCCCCeE----EEe--cccC-CCcceEEEecCCCEEEEEeCCC-CeEEEEEeeCCCCcceeeeecCC----
Q 015463          227 KDTGRVLKYDPTTKQT----TVL--LRNL-QFPNGLSLSKDKSFFVFCEGSV-GRLHKYWLIGEKAGNLEAFAILP----  294 (406)
Q Consensus       227 ~~~g~l~~~d~~t~~~----~~~--~~~~-~~~ngi~l~~d~~~l~v~~t~~-~~i~~~~~~g~~~~~~~~~~~l~----  294 (406)
                      ...|-|-.||.++-..    +.+  ...+ ...+.+++++|.+.|-++.... +.+..+.+     ....+|.+.|    
T Consensus       406 S~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHv-----PS~TVFsNfP~~n~  480 (514)
T KOG2055|consen  406 SDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHV-----PSCTVFSNFPTSNT  480 (514)
T ss_pred             cCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEec-----cceeeeccCCCCCC
Confidence            2347777887553211    111  1222 2235688999998887775543 23433433     2234454422    


Q ss_pred             --CCCCceEECCCCCEE-EEEccC
Q 015463          295 --GYPDNVRTNEKGEFW-VAIHCR  315 (406)
Q Consensus       295 --g~pd~i~~d~~G~lw-v~~~~~  315 (406)
                        |++..+++++.|.+. +|.-.+
T Consensus       481 ~vg~vtc~aFSP~sG~lAvGNe~g  504 (514)
T KOG2055|consen  481 KVGHVTCMAFSPNSGYLAVGNEAG  504 (514)
T ss_pred             cccceEEEEecCCCceEEeecCCC
Confidence              456678899877644 444444

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=96.58  E-value=1.1  Score=45.88  Aligned_cols=158  Identities=13%  Similarity=0.036  Sum_probs=101.4

Q ss_pred             cceEEEcCCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-EEEE
Q 015463           71 PESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYIA  148 (406)
Q Consensus        71 pe~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-L~Va  148 (406)
                      -++|+..+.+..+-+|+.+|-++.+... ..-++...                   ..-..+|.+.+.+++ ++. |..+
T Consensus       113 IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~-------------------l~rq~sRvLslsw~~-~~~~i~~G  172 (691)
T KOG2048|consen  113 IWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRS-------------------LMRQKSRVLSLSWNP-TGTKIAGG  172 (691)
T ss_pred             eeEEEeCCccceEEeecCCceEEEEecCCceEEEEee-------------------cccccceEEEEEecC-CccEEEec
Confidence            4888888888878889999966666544 22222111                   111148899999999 666 7777


Q ss_pred             eCCCcEEEEeCCCCeEEEccc-ccCCc---ccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCc
Q 015463          149 DAYFGLMKVGPEGGLATSLAT-EAEGV---PLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIK  224 (406)
Q Consensus       149 d~~~gl~~~d~~~~~~~~l~~-~~~~~---~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  224 (406)
                      ..++-|..+|...+....+.+ ..++.   ....+-++.+-+++.|--+|+.                            
T Consensus       173 s~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~----------------------------  224 (691)
T KOG2048|consen  173 SIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSA----------------------------  224 (691)
T ss_pred             ccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCC----------------------------
Confidence            655448888987765433221 11111   2234566666688888777764                            


Q ss_pred             ccCCCCeEEEEeCCCCeEEEec-ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCC
Q 015463          225 ITKDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE  282 (406)
Q Consensus       225 ~~~~~g~l~~~d~~t~~~~~~~-~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~  282 (406)
                           |.|-.+|++.+....-. -.......++.+++++.++.+.. ..+|..|...+.
T Consensus       225 -----G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGv-d~~ii~~~~~~~  277 (691)
T KOG2048|consen  225 -----GTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGV-DPKIIQYSLTTN  277 (691)
T ss_pred             -----ceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccC-CCceEEEEecCC
Confidence                 88999999877542211 11234457788888888877654 678999988764

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=96.57  E-value=0.005  Score=35.93  Aligned_cols=28  Identities=14%  Similarity=0.483  Sum_probs=23.6

Q ss_pred             CCCcceEEEecCCCEEEEEeCCCCeEEEE
Q 015463          249 LQFPNGLSLSKDKSFFVFCEGSVGRLHKY  277 (406)
Q Consensus       249 ~~~~ngi~l~~d~~~l~v~~t~~~~i~~~  277 (406)
                      +..|.|++++++| .+||+++.++||++|
T Consensus         1 f~~P~gvav~~~g-~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    1 FNYPHGVAVDSDG-NIYVADSGNHRVQVF   28 (28)
T ss_dssp             BSSEEEEEEETTS-EEEEEECCCTEEEEE
T ss_pred             CcCCcEEEEeCCC-CEEEEECCCCEEEEC
Confidence            3578999999666 599999999999875

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=96.57  E-value=0.81  Score=48.34  Aligned_cols=157  Identities=15%  Similarity=0.148  Sum_probs=95.3

Q ss_pred             cccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEE
Q 015463           67 QIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (406)
Q Consensus        67 ~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~  146 (406)
                      ...|--.|++|++|.-+++...+|-|.+|+...-.+      ....+|             ..+....+++..  .+.+.
T Consensus        12 ht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e------~P~ti~-------------~~g~~v~~ia~~--s~~f~   70 (933)
T KOG1274|consen   12 HTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE------EPETID-------------ISGELVSSIACY--SNHFL   70 (933)
T ss_pred             ccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc------CCchhh-------------ccCceeEEEeec--ccceE
Confidence            345677899999999888888899888886541000      000011             011223456655  34666


Q ss_pred             EEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCccc
Q 015463          147 IADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKIT  226 (406)
Q Consensus       147 Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~  226 (406)
                      .++..+-+.++....++...+...+.    .-+++++++.+|+..++.++                              
T Consensus        71 ~~s~~~tv~~y~fps~~~~~iL~Rft----lp~r~~~v~g~g~~iaagsd------------------------------  116 (933)
T KOG1274|consen   71 TGSEQNTVLRYKFPSGEEDTILARFT----LPIRDLAVSGSGKMIAAGSD------------------------------  116 (933)
T ss_pred             EeeccceEEEeeCCCCCccceeeeee----ccceEEEEecCCcEEEeecC------------------------------
Confidence            77666777777766555443322211    12567899999977776543                              


Q ss_pred             CCCCeEEEEeCCCCeEEEecccCCCc-ceEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463          227 KDTGRVLKYDPTTKQTTVLLRNLQFP-NGLSLSKDKSFFVFCEGSVGRLHKYWLIG  281 (406)
Q Consensus       227 ~~~g~l~~~d~~t~~~~~~~~~~~~~-ngi~l~~d~~~l~v~~t~~~~i~~~~~~g  281 (406)
                        +-.|-..+..+...+....+...+ -++.++|.+++|-++.. .+.|..|++..
T Consensus       117 --D~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~-dG~v~iw~~~~  169 (933)
T KOG1274|consen  117 --DTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC-DGKVQIWDLQD  169 (933)
T ss_pred             --ceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec-CceEEEEEccc
Confidence              112555555544444444454444 47889999998877755 68888888763

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=96.47  E-value=0.97  Score=44.16  Aligned_cols=146  Identities=14%  Similarity=0.129  Sum_probs=79.0

Q ss_pred             EcCCCCeeEEEecCCEEEEEeCCcee-EEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCCCcE
Q 015463           76 FDPLGRGPYTGVADGRILFWDGLKWT-DFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGL  154 (406)
Q Consensus        76 ~d~~g~~ly~g~~~g~I~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~~gl  154 (406)
                      .+.+|+ +|+++.+|.|+-++.+... .........                ...++.|.  . .. +|++|+++....+
T Consensus        65 ~~~dg~-v~~~~~~G~i~A~d~~~g~~~W~~~~~~~----------------~~~~~~~~--~-~~-~G~i~~g~~~g~~  123 (370)
T COG1520          65 ADGDGT-VYVGTRDGNIFALNPDTGLVKWSYPLLGA----------------VAQLSGPI--L-GS-DGKIYVGSWDGKL  123 (370)
T ss_pred             EeeCCe-EEEecCCCcEEEEeCCCCcEEecccCcCc----------------ceeccCce--E-Ee-CCeEEEecccceE
Confidence            445777 9999999999999988222 221111000                01122232  2 22 6899999876559


Q ss_pred             EEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEE
Q 015463          155 MKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLK  234 (406)
Q Consensus       155 ~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~  234 (406)
                      +.+|.++|+..-... ..+. .. ...-++-.+|.+|+.+.                                 +|.++.
T Consensus       124 y~ld~~~G~~~W~~~-~~~~-~~-~~~~~v~~~~~v~~~s~---------------------------------~g~~~a  167 (370)
T COG1520         124 YALDASTGTLVWSRN-VGGS-PY-YASPPVVGDGTVYVGTD---------------------------------DGHLYA  167 (370)
T ss_pred             EEEECCCCcEEEEEe-cCCC-eE-EecCcEEcCcEEEEecC---------------------------------CCeEEE
Confidence            999996665322111 1121 11 11223445788888852                                 277999


Q ss_pred             EeCCCCeEEEecc-----cCCCcceEEEecCCCEEEEEeCC-CCeEEEEEee
Q 015463          235 YDPTTKQTTVLLR-----NLQFPNGLSLSKDKSFFVFCEGS-VGRLHKYWLI  280 (406)
Q Consensus       235 ~d~~t~~~~~~~~-----~~~~~ngi~l~~d~~~l~v~~t~-~~~i~~~~~~  280 (406)
                      +|.++|+..--.+     ......... ..++ .+|+.... ...++.++..
T Consensus       168 l~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~-~vy~~~~~~~~~~~a~~~~  217 (370)
T COG1520         168 LNADTGTLKWTYETPAPLSLSIYGSPA-IASG-TVYVGSDGYDGILYALNAE  217 (370)
T ss_pred             EEccCCcEEEEEecCCccccccccCce-eecc-eEEEecCCCcceEEEEEcc
Confidence            9999886533211     111112222 2233 46665442 3478888874

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=96.47  E-value=0.11  Score=50.61  Aligned_cols=157  Identities=13%  Similarity=0.209  Sum_probs=98.7

Q ss_pred             cccceeccCcccCcceEEEcC-CCCeeEEEecCCEEEEEeCC----ceeEEEeecCCCccccCCCCCcccccccCCcCCc
Q 015463           58 QNSEIKFLNQIQGPESMAFDP-LGRGPYTGVADGRILFWDGL----KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGR  132 (406)
Q Consensus        58 ~~~~~~~~~~~~gpe~i~~d~-~g~~ly~g~~~g~I~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (406)
                      .+....+.|.-.|..++.+-+ .+.++..+..++.|+.|+.-    -+++|...                        ..
T Consensus       204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH------------------------~k  259 (503)
T KOG0282|consen  204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGH------------------------RK  259 (503)
T ss_pred             HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcc------------------------hh
Confidence            344456778888888888887 78877788889999988743    22222111                        11


Q ss_pred             -ceEEEEeCCCCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCC-CEEEEeCCCchhhhccccccc
Q 015463          133 -PLGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRQMQKENI  209 (406)
Q Consensus       133 -p~gi~~d~~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~  209 (406)
                       ...+++.. +|.-+.+.+. .-|-.+|.++|+...-...     ..-|.++-+.+|+ +++++-.+             
T Consensus       260 ~Vrd~~~s~-~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-----~~~~~cvkf~pd~~n~fl~G~s-------------  320 (503)
T KOG0282|consen  260 PVRDASFNN-CGTSFLSASFDRFLKLWDTETGQVLSRFHL-----DKVPTCVKFHPDNQNIFLVGGS-------------  320 (503)
T ss_pred             hhhhhhccc-cCCeeeeeecceeeeeeccccceEEEEEec-----CCCceeeecCCCCCcEEEEecC-------------
Confidence             23456665 5554444444 5578899999976542221     1246677788877 78777433             


Q ss_pred             cccccccCCCCCCCcccCCCCeEEEEeCCCCeEEE-ecccCCCcceEEEecCCCEEEEEeCCCCeEEEE
Q 015463          210 PLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTV-LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKY  277 (406)
Q Consensus       210 ~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~-~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~  277 (406)
                                         +++|..+|..++++.. +...+...+.|.+-++++.. ++.+....+..+
T Consensus       321 -------------------d~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rF-issSDdks~riW  369 (503)
T KOG0282|consen  321 -------------------DKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRF-ISSSDDKSVRIW  369 (503)
T ss_pred             -------------------CCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceE-eeeccCccEEEE
Confidence                               5889999998887422 23445666778887777654 444444444333

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=96.45  E-value=0.22  Score=47.93  Aligned_cols=156  Identities=16%  Similarity=0.207  Sum_probs=82.2

Q ss_pred             CcceEEEEeCCCCcEEEEeCCCc------EEEEeCCC-----CeEEEcc----cccCCcccc----cccceEEcCCCCEE
Q 015463          131 GRPLGLRFDKKTGDLYIADAYFG------LMKVGPEG-----GLATSLA----TEAEGVPLR----FTNDLDIDDEGNVY  191 (406)
Q Consensus       131 ~~p~gi~~d~~~g~L~Vad~~~g------l~~~d~~~-----~~~~~l~----~~~~~~~~~----~~~~l~~d~dG~ly  191 (406)
                      |.--||.++++++.+|.......      ++.++...     +.++...    ....|.++.    .+.+|++.++|.+|
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~   99 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW   99 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence            33468899864677665544444      56555432     1121111    112233332    56689998899999


Q ss_pred             EEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeE-EEe-c-ccC-------------CCcceE
Q 015463          192 FTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQT-TVL-L-RNL-------------QFPNGL  255 (406)
Q Consensus       192 ~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~-~~~-~-~~~-------------~~~ngi  255 (406)
                      +++-....                          .....+|++|+++ |+. +.+ . ..+             ....++
T Consensus       100 is~E~~~~--------------------------~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~l  152 (326)
T PF13449_consen  100 ISSEGGRT--------------------------GGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGL  152 (326)
T ss_pred             EEeCCccC--------------------------CCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEE
Confidence            99843100                          0112568899887 443 322 1 111             122479


Q ss_pred             EEecCCCEEEEEeCCC---------------CeEEEEEeeCCCCcceeeee-cCC--------CCCCceEECCCCCEEEE
Q 015463          256 SLSKDKSFFVFCEGSV---------------GRLHKYWLIGEKAGNLEAFA-ILP--------GYPDNVRTNEKGEFWVA  311 (406)
Q Consensus       256 ~l~~d~~~l~v~~t~~---------------~~i~~~~~~g~~~~~~~~~~-~l~--------g~pd~i~~d~~G~lwv~  311 (406)
                      ++++|++.+|++....               .||++|+...+... ...|. .+.        .-+..+..-++|+|+|-
T Consensus       153 a~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~-~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  153 AVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEP-VAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             EECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCcc-ceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence            9999999777764332               36777776531111 12222 221        11233455567888886


Q ss_pred             Ecc
Q 015463          312 IHC  314 (406)
Q Consensus       312 ~~~  314 (406)
                      -..
T Consensus       232 ER~  234 (326)
T PF13449_consen  232 ERD  234 (326)
T ss_pred             Ecc
Confidence            543

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=96.41  E-value=0.72  Score=41.94  Aligned_cols=192  Identities=16%  Similarity=0.165  Sum_probs=103.3

Q ss_pred             eeccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC
Q 015463           62 IKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK  141 (406)
Q Consensus        62 ~~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~  141 (406)
                      +...++..--.++++..+|..+-.|+.++.+..++.+.. .+...-..++                 ..+..-.++.++.
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-r~~~~~~~~g-----------------h~~svdql~w~~~   75 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-RFRKELVYRG-----------------HTDSVDQLCWDPK   75 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecch-hhhhhhcccC-----------------CCcchhhheeCCC
Confidence            334556667789999999998888999988888776521 1111100000                 0112233455553


Q ss_pred             CCcEE-EEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCC
Q 015463          142 TGDLY-IADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDP  220 (406)
Q Consensus       142 ~g~L~-Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~  220 (406)
                      ...++ .+.+++.+.++|...++...-... .+.    -..+...++|+..+..                          
T Consensus        76 ~~d~~atas~dk~ir~wd~r~~k~~~~i~~-~~e----ni~i~wsp~g~~~~~~--------------------------  124 (313)
T KOG1407|consen   76 HPDLFATASGDKTIRIWDIRSGKCTARIET-KGE----NINITWSPDGEYIAVG--------------------------  124 (313)
T ss_pred             CCcceEEecCCceEEEEEeccCcEEEEeec-cCc----ceEEEEcCCCCEEEEe--------------------------
Confidence            44444 444456788888776654322111 111    0123444555332221                          


Q ss_pred             CCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCc-
Q 015463          221 SPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDN-  299 (406)
Q Consensus       221 ~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~-  299 (406)
                            ..+..|-.+|..+.+...-.+...+.|-+++..+++ +++.+++.+.|..+.--     ..+.+..+...|.| 
T Consensus       125 ------~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd-~Fflt~GlG~v~ILsyp-----sLkpv~si~AH~snC  192 (313)
T KOG1407|consen  125 ------NKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSND-LFFLTNGLGCVEILSYP-----SLKPVQSIKAHPSNC  192 (313)
T ss_pred             ------cCcccEEEEEecccceeehhcccceeeeeeecCCCC-EEEEecCCceEEEEecc-----ccccccccccCCcce
Confidence                  123457777766544433333344567788886676 55666666766554321     22333334445665 


Q ss_pred             --eEECCCCCEEEEEcc
Q 015463          300 --VRTNEKGEFWVAIHC  314 (406)
Q Consensus       300 --i~~d~~G~lwv~~~~  314 (406)
                        |.+|++|+.+.....
T Consensus       193 icI~f~p~GryfA~GsA  209 (313)
T KOG1407|consen  193 ICIEFDPDGRYFATGSA  209 (313)
T ss_pred             EEEEECCCCceEeeccc
Confidence              568999997765443

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=96.31  E-value=1.2  Score=43.42  Aligned_cols=30  Identities=13%  Similarity=0.124  Sum_probs=25.4

Q ss_pred             CCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          250 QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       250 ~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                      ..+.|++.+.....||++|. ...||+|..+
T Consensus       208 sQ~EGCVVDDe~g~LYvgEE-~~GIW~y~Ae  237 (381)
T PF02333_consen  208 SQPEGCVVDDETGRLYVGEE-DVGIWRYDAE  237 (381)
T ss_dssp             S-EEEEEEETTTTEEEEEET-TTEEEEEESS
T ss_pred             CcceEEEEecccCCEEEecC-ccEEEEEecC
Confidence            46789999988889999997 4799999977

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=96.31  E-value=0.62  Score=45.63  Aligned_cols=64  Identities=17%  Similarity=0.180  Sum_probs=41.9

Q ss_pred             CcceEEEecCC------CEEEEEeCCCCeEEEEEeeCCCCcceeeee--cCCCCCCceEECCCCCEEEEEcc
Q 015463          251 FPNGLSLSKDK------SFFVFCEGSVGRLHKYWLIGEKAGNLEAFA--ILPGYPDNVRTNEKGEFWVAIHC  314 (406)
Q Consensus       251 ~~ngi~l~~d~------~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~--~l~g~pd~i~~d~~G~lwv~~~~  314 (406)
                      .|.|+++....      +.++|.......+.+...+|...-..+-|.  +..|-|-++++.+||.|++++..
T Consensus       315 ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~DGallv~~D~  386 (399)
T COG2133         315 APSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPDGALLVLTDQ  386 (399)
T ss_pred             ccceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEecCCCCcccceEECCCCeEEEeecC
Confidence            45788887431      357888776655666665543111222222  34578999999999999999865

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=96.27  E-value=0.12  Score=46.63  Aligned_cols=137  Identities=12%  Similarity=0.064  Sum_probs=77.3

Q ss_pred             EEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccc
Q 015463          136 LRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCS  215 (406)
Q Consensus       136 i~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~  215 (406)
                      +.+...+..+.-+...+.+..+|..+++...-...     ...++++.+..||.|......                   
T Consensus       149 v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-----~s~VtSlEvs~dG~ilTia~g-------------------  204 (334)
T KOG0278|consen  149 VLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-----NSPVTSLEVSQDGRILTIAYG-------------------  204 (334)
T ss_pred             EEEeccCceEEeeccCCceEEEEeccCcEEEEEec-----CCCCcceeeccCCCEEEEecC-------------------
Confidence            44555355565554457888899888754321111     134778899999988766532                   


Q ss_pred             cCCCCCCCcccCCCCeEEEEeCCCCeEEEec--ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee-c
Q 015463          216 SLNDPSPIKITKDTGRVLKYDPTTKQTTVLL--RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-I  292 (406)
Q Consensus       216 e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~--~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~-~  292 (406)
                                    +.|..+|+++  +..+.  +--...+.-.|.|+. .+||+.-....+++|+-....  ..+.+. .
T Consensus       205 --------------ssV~Fwdaks--f~~lKs~k~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~Tge--Ei~~~nkg  265 (334)
T KOG0278|consen  205 --------------SSVKFWDAKS--FGLLKSYKMPCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGE--EIGSYNKG  265 (334)
T ss_pred             --------------ceeEEecccc--ccceeeccCccccccccccCCC-ceEEecCcceEEEEEeccCCc--eeeecccC
Confidence                          4577777754  33322  111223445588877 467877666778888865321  111221 1


Q ss_pred             CCCCCCceEECCCCCEEEEEccC
Q 015463          293 LPGYPDNVRTNEKGEFWVAIHCR  315 (406)
Q Consensus       293 l~g~pd~i~~d~~G~lwv~~~~~  315 (406)
                      -+|---.+++.++|.+|.+....
T Consensus       266 h~gpVhcVrFSPdGE~yAsGSED  288 (334)
T KOG0278|consen  266 HFGPVHCVRFSPDGELYASGSED  288 (334)
T ss_pred             CCCceEEEEECCCCceeeccCCC
Confidence            12222345667777777665443

>PRK01029 tolB translocation protein TolB; Provisional

Probab=96.25  E-value=1.5  Score=43.91  Aligned_cols=119  Identities=14%  Similarity=0.029  Sum_probs=66.0

Q ss_pred             cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC---E-EEEeCCCchhhhccccccccccccccCCCCCCCcccCC
Q 015463          153 GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN---V-YFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKD  228 (406)
Q Consensus       153 gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~---l-y~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  228 (406)
                      .|+.+|.+++..+.+...  ....   ..-...+||+   + |++..                               .+
T Consensus       166 ~l~~~d~dG~~~~~lt~~--~~~~---~sP~wSPDG~~~~~~y~S~~-------------------------------~g  209 (428)
T PRK01029        166 ELWSVDYDGQNLRPLTQE--HSLS---ITPTWMHIGSGFPYLYVSYK-------------------------------LG  209 (428)
T ss_pred             eEEEEcCCCCCceEcccC--CCCc---ccceEccCCCceEEEEEEcc-------------------------------CC
Confidence            588888887766665432  1111   2237788884   3 23331                               12


Q ss_pred             CCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCC--CCeEEEE--EeeCCCCcceeeeec-CCCCCCceEEC
Q 015463          229 TGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS--VGRLHKY--WLIGEKAGNLEAFAI-LPGYPDNVRTN  303 (406)
Q Consensus       229 ~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~--~~~i~~~--~~~g~~~~~~~~~~~-l~g~pd~i~~d  303 (406)
                      ...|+.++.++++.+.+...-......+++|||+.+.++...  ...++..  ++.....+..+.+.. ..+.....+.+
T Consensus       210 ~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS  289 (428)
T PRK01029        210 VPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS  289 (428)
T ss_pred             CceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEEC
Confidence            346999999988777665422223357899999988877642  2245553  443221222222222 12223346778


Q ss_pred             CCCC
Q 015463          304 EKGE  307 (406)
Q Consensus       304 ~~G~  307 (406)
                      +||+
T Consensus       290 PDG~  293 (428)
T PRK01029        290 PDGT  293 (428)
T ss_pred             CCCC
Confidence            8887

>PRK13684 Ycf48-like protein; Provisional

Probab=96.23  E-value=1.2  Score=42.84  Aligned_cols=82  Identities=15%  Similarity=0.225  Sum_probs=38.3

Q ss_pred             CeEEEEeCCCCeEEEecccC-CCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee-cCCCCCCceEECCCCC
Q 015463          230 GRVLKYDPTTKQTTVLLRNL-QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPGYPDNVRTNEKGE  307 (406)
Q Consensus       230 g~l~~~d~~t~~~~~~~~~~-~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~-~l~g~pd~i~~d~~G~  307 (406)
                      |.|++=+-.....+.+.... ...+++++.+++..+ ++. ..+.+++-..++.  .+.+... .......++.+.++|+
T Consensus       152 G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v-~~g-~~G~i~~s~~~gg--~tW~~~~~~~~~~l~~i~~~~~g~  227 (334)
T PRK13684        152 GAIYRTTDGGKNWEALVEDAAGVVRNLRRSPDGKYV-AVS-SRGNFYSTWEPGQ--TAWTPHQRNSSRRLQSMGFQPDGN  227 (334)
T ss_pred             ceEEEECCCCCCceeCcCCCcceEEEEEECCCCeEE-EEe-CCceEEEEcCCCC--CeEEEeeCCCcccceeeeEcCCCC
Confidence            55666554434444443222 223567777777544 332 2456655422221  1111111 1111234566667788


Q ss_pred             EEEEEccC
Q 015463          308 FWVAIHCR  315 (406)
Q Consensus       308 lwv~~~~~  315 (406)
                      +|+....+
T Consensus       228 ~~~vg~~G  235 (334)
T PRK13684        228 LWMLARGG  235 (334)
T ss_pred             EEEEecCC
Confidence            88765544

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=96.19  E-value=1  Score=41.58  Aligned_cols=159  Identities=14%  Similarity=0.094  Sum_probs=98.0

Q ss_pred             ccceeccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCccccCCCCCcccccccCCcCCcceE
Q 015463           59 NSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLG  135 (406)
Q Consensus        59 ~~~~~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g  135 (406)
                      +..+.+.+.--.-.+..+-+|++ |.|++.|.....||-+   +.+.|.   .                    ..+...+
T Consensus       136 ~v~r~l~gHtgylScC~f~dD~~-ilT~SGD~TCalWDie~g~~~~~f~---G--------------------H~gDV~s  191 (343)
T KOG0286|consen  136 RVSRELAGHTGYLSCCRFLDDNH-ILTGSGDMTCALWDIETGQQTQVFH---G--------------------HTGDVMS  191 (343)
T ss_pred             eeeeeecCccceeEEEEEcCCCc-eEecCCCceEEEEEcccceEEEEec---C--------------------CcccEEE
Confidence            34444455444445555656787 9999999999999977   222221   0                    1356788


Q ss_pred             EEEeCCCCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccccccccc
Q 015463          136 LRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLC  214 (406)
Q Consensus       136 i~~d~~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~  214 (406)
                      |.+.|.+++.||.-.- .--..+|...+....-   +.|- -..+|.+.+-|+|.-+.+-+.                  
T Consensus       192 lsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qt---F~gh-esDINsv~ffP~G~afatGSD------------------  249 (343)
T KOG0286|consen  192 LSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQT---FEGH-ESDINSVRFFPSGDAFATGSD------------------  249 (343)
T ss_pred             EecCCCCCCeEEecccccceeeeeccCcceeEe---eccc-ccccceEEEccCCCeeeecCC------------------
Confidence            8888867888887543 3456677665543221   1221 235889999999988887543                  


Q ss_pred             ccCCCCCCCcccCCCCeEEEEeCCCC-eEEEecc--cCCCcceEEEecCCCEEEEEeCCCCeEEEEE
Q 015463          215 SSLNDPSPIKITKDTGRVLKYDPTTK-QTTVLLR--NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYW  278 (406)
Q Consensus       215 ~e~~~~~~~~~~~~~g~l~~~d~~t~-~~~~~~~--~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~  278 (406)
                                    ++..-.||.... ++..+..  .....+.+++|..|+.|+.. .....+.+++
T Consensus       250 --------------D~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfag-y~d~~c~vWD  301 (343)
T KOG0286|consen  250 --------------DATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAG-YDDFTCNVWD  301 (343)
T ss_pred             --------------CceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEee-ecCCceeEee
Confidence                          244444565543 3444432  13345789999999866554 4456777766

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=96.19  E-value=0.28  Score=46.74  Aligned_cols=213  Identities=15%  Similarity=0.140  Sum_probs=113.4

Q ss_pred             cceeccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcc--ccCCCCCcccccccCCcCCcceE
Q 015463           60 SEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSE--LCNPKPIATSYLKNEHICGRPLG  135 (406)
Q Consensus        60 ~~~~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~g  135 (406)
                      ..+...+......++.+..+|- +|+|+.|++|..|+..  ..-........+-.  .|..... -..-..+++...|..
T Consensus       239 ~~~~lsgHT~~VTCvrwGG~gl-iySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~-LRtgaf~~t~~~~~~  316 (480)
T KOG0271|consen  239 CVRTLSGHTASVTCVRWGGEGL-IYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYV-LRTGAFDHTGRKPKS  316 (480)
T ss_pred             EEEEeccCccceEEEEEcCCce-EEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhh-hhccccccccccCCC
Confidence            3444455555667888876774 9999999999888755  11110000000000  0100000 000001111111111


Q ss_pred             E------------EEeCCCCcEEE-EeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhh
Q 015463          136 L------------RFDKKTGDLYI-ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRR  202 (406)
Q Consensus       136 i------------~~d~~~g~L~V-ad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~  202 (406)
                      .            +..++.++-.| +..+..++.+++...+ +.+.. ..| -...+|.+.+.|||++..+.+-      
T Consensus       317 ~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k-kpi~r-mtg-Hq~lVn~V~fSPd~r~IASaSF------  387 (480)
T KOG0271|consen  317 FSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK-KPITR-MTG-HQALVNHVSFSPDGRYIASASF------  387 (480)
T ss_pred             hHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc-cchhh-hhc-hhhheeeEEECCCccEEEEeec------
Confidence            0            00011233344 4334678888875332 11111 111 1235899999999976665432      


Q ss_pred             ccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEeccc-CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463          203 QMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  281 (406)
Q Consensus       203 ~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g  281 (406)
                                                +..+-.+|..+|++..-..+ .....-++++.|.+ |+|+.+....+..+++..
T Consensus       388 --------------------------DkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~t  440 (480)
T KOG0271|consen  388 --------------------------DKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRT  440 (480)
T ss_pred             --------------------------ccceeeeeCCCcchhhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEeee
Confidence                                      23466777788876443333 33345789999885 668877667777777653


Q ss_pred             CCCcceeeeecCCCCCCceE---ECCCCCEEEEEccC
Q 015463          282 EKAGNLEAFAILPGYPDNVR---TNEKGEFWVAIHCR  315 (406)
Q Consensus       282 ~~~~~~~~~~~l~g~pd~i~---~d~~G~lwv~~~~~  315 (406)
                           .++..++||..|.+.   ..+||..-++....
T Consensus       441 -----kKl~~DLpGh~DEVf~vDwspDG~rV~sggkd  472 (480)
T KOG0271|consen  441 -----KKLKQDLPGHADEVFAVDWSPDGQRVASGGKD  472 (480)
T ss_pred             -----eeecccCCCCCceEEEEEecCCCceeecCCCc
Confidence                 234557898888754   35888877766543

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=96.13  E-value=1.2  Score=43.35  Aligned_cols=84  Identities=25%  Similarity=0.470  Sum_probs=49.5

Q ss_pred             eEEEEeCCCCeEEEec-------ccCCCcceEEEec---CCCEEEEEeCCCCeEEEEEeeCCCCcc--eeeee--cCCCC
Q 015463          231 RVLKYDPTTKQTTVLL-------RNLQFPNGLSLSK---DKSFFVFCEGSVGRLHKYWLIGEKAGN--LEAFA--ILPGY  296 (406)
Q Consensus       231 ~l~~~d~~t~~~~~~~-------~~~~~~ngi~l~~---d~~~l~v~~t~~~~i~~~~~~g~~~~~--~~~~~--~l~g~  296 (406)
                      ++|++|+.++.++.+.       ..+..+.|+|+..   +++...+.....+.+..|.+.....+.  .+.+.  .++..
T Consensus       130 ~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ  209 (381)
T PF02333_consen  130 RLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQ  209 (381)
T ss_dssp             EEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-
T ss_pred             EEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCc
Confidence            4889999888776653       2334567999864   355444444445788888886332332  12222  35556


Q ss_pred             CCceEEC-CCCCEEEEEcc
Q 015463          297 PDNVRTN-EKGEFWVAIHC  314 (406)
Q Consensus       297 pd~i~~d-~~G~lwv~~~~  314 (406)
                      +.++++| ..|.||++--.
T Consensus       210 ~EGCVVDDe~g~LYvgEE~  228 (381)
T PF02333_consen  210 PEGCVVDDETGRLYVGEED  228 (381)
T ss_dssp             EEEEEEETTTTEEEEEETT
T ss_pred             ceEEEEecccCCEEEecCc
Confidence            7888886 45789998743

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=96.09  E-value=0.016  Score=33.78  Aligned_cols=24  Identities=29%  Similarity=0.533  Sum_probs=19.4

Q ss_pred             cceEEEEeCCCCcEEEEeCCC-cEEE
Q 015463          132 RPLGLRFDKKTGDLYIADAYF-GLMK  156 (406)
Q Consensus       132 ~p~gi~~d~~~g~L~Vad~~~-gl~~  156 (406)
                      .|.||++++ +|+|||+|..+ .|.+
T Consensus         3 ~P~gvav~~-~g~i~VaD~~n~rV~v   27 (28)
T PF01436_consen    3 YPHGVAVDS-DGNIYVADSGNHRVQV   27 (28)
T ss_dssp             SEEEEEEET-TSEEEEEECCCTEEEE
T ss_pred             CCcEEEEeC-CCCEEEEECCCCEEEE
Confidence            599999997 99999999874 3443

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=96.08  E-value=0.24  Score=47.88  Aligned_cols=149  Identities=20%  Similarity=0.161  Sum_probs=89.0

Q ss_pred             cceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeC
Q 015463           71 PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA  150 (406)
Q Consensus        71 pe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~  150 (406)
                      -.+.++.|||.++-+|+.+|.+..||.......+..+.                    ..+....|.|.. +|...+..+
T Consensus       350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpg--------------------ht~~vk~i~FsE-NGY~Lat~a  408 (506)
T KOG0289|consen  350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPG--------------------HTGPVKAISFSE-NGYWLATAA  408 (506)
T ss_pred             eEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCC--------------------CCCceeEEEecc-CceEEEEEe
Confidence            45778889998666789999888888762223322221                    124456789986 665444444


Q ss_pred             CCc-EEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCC
Q 015463          151 YFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDT  229 (406)
Q Consensus       151 ~~g-l~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~  229 (406)
                      ..+ +..+|...-  +.+.+- .-.....++++.+|..|.......+                                +
T Consensus       409 dd~~V~lwDLRKl--~n~kt~-~l~~~~~v~s~~fD~SGt~L~~~g~--------------------------------~  453 (506)
T KOG0289|consen  409 DDGSVKLWDLRKL--KNFKTI-QLDEKKEVNSLSFDQSGTYLGIAGS--------------------------------D  453 (506)
T ss_pred             cCCeEEEEEehhh--ccccee-eccccccceeEEEcCCCCeEEeecc--------------------------------e
Confidence            455 889997532  222111 1111235789999999976555432                                1


Q ss_pred             CeEEEEeCCCCeEEEec---ccCCCcceEEEecCCCEEEEEeCCCCeEEEE
Q 015463          230 GRVLKYDPTTKQTTVLL---RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKY  277 (406)
Q Consensus       230 g~l~~~d~~t~~~~~~~---~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~  277 (406)
                      =.+|.++..+++++...   ......+|+.+..+-  .|++.++..++.++
T Consensus       454 l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~a--q~l~s~smd~~l~~  502 (506)
T KOG0289|consen  454 LQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHA--QYLASTSMDAILRL  502 (506)
T ss_pred             eEEEEEecccccceeeehhhhcccccceeeecccc--eEEeeccchhheEE
Confidence            35888888887766543   222356788776544  34455555666543

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=96.03  E-value=0.025  Score=36.13  Aligned_cols=38  Identities=21%  Similarity=0.243  Sum_probs=33.1

Q ss_pred             ecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCC
Q 015463          245 LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE  282 (406)
Q Consensus       245 ~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~  282 (406)
                      +..++..|+|+++++.++.+|+++.....|.+++++|.
T Consensus         4 ~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~   41 (43)
T smart00135        4 LSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT   41 (43)
T ss_pred             EECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence            34567889999999999999999999999999998753

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=96.03  E-value=2.2  Score=43.76  Aligned_cols=154  Identities=18%  Similarity=0.080  Sum_probs=89.4

Q ss_pred             CcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEe
Q 015463           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad  149 (406)
                      .-|++++.+.|+ ||....+|.|..||........                    ..+..++..+.|+..+.+..+-|+.
T Consensus        71 sIE~L~W~e~~R-LFS~g~sg~i~EwDl~~lk~~~--------------------~~d~~gg~IWsiai~p~~~~l~Igc  129 (691)
T KOG2048|consen   71 SIESLAWAEGGR-LFSSGLSGSITEWDLHTLKQKY--------------------NIDSNGGAIWSIAINPENTILAIGC  129 (691)
T ss_pred             ceeeEEEccCCe-EEeecCCceEEEEecccCceeE--------------------EecCCCcceeEEEeCCccceEEeec
Confidence            348999986666 9999999999999986322221                    1223356678899988666677874


Q ss_pred             CCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCC
Q 015463          150 AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDT  229 (406)
Q Consensus       150 ~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~  229 (406)
                      ..+-++.++...++++.-...  +.+-..+-++..+++|.=.++.+                                .+
T Consensus       130 ddGvl~~~s~~p~~I~~~r~l--~rq~sRvLslsw~~~~~~i~~Gs--------------------------------~D  175 (691)
T KOG2048|consen  130 DDGVLYDFSIGPDKITYKRSL--MRQKSRVLSLSWNPTGTKIAGGS--------------------------------ID  175 (691)
T ss_pred             CCceEEEEecCCceEEEEeec--ccccceEEEEEecCCccEEEecc--------------------------------cC
Confidence            433355555555554432111  11223455778888886333322                                24


Q ss_pred             CeEEEEeCCCCeEEEe----cccCCC-----cceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          230 GRVLKYDPTTKQTTVL----LRNLQF-----PNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       230 g~l~~~d~~t~~~~~~----~~~~~~-----~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                      |.+..+|..+++.-.+    .+++..     ..++.+-.|+  .+++....+.|.-++.+
T Consensus       176 g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~  233 (691)
T KOG2048|consen  176 GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSI  233 (691)
T ss_pred             ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEccc
Confidence            7788888887765442    122222     2344444555  34555556667666643

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=95.96  E-value=0.36  Score=50.34  Aligned_cols=184  Identities=15%  Similarity=0.146  Sum_probs=105.1

Q ss_pred             CcceEEEcCCCCeeEEEecCCEEEEEeCC-cee--EEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEE
Q 015463           70 GPESMAFDPLGRGPYTGVADGRILFWDGL-KWT--DFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~  146 (406)
                      ..-+++++.=||-.++|+..|.|-+++.. +..  .|....                    ...+...|++.|. -+++.
T Consensus       450 ~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~--------------------ah~~~V~gla~D~-~n~~~  508 (910)
T KOG1539|consen  450 NATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSP--------------------AHKGEVTGLAVDG-TNRLL  508 (910)
T ss_pred             ceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCc--------------------cccCceeEEEecC-CCceE
Confidence            44677888889988999999999999987 332  231110                    1134457999997 77888


Q ss_pred             EEeCCCcEEEE-eCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcc
Q 015463          147 IADAYFGLMKV-GPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKI  225 (406)
Q Consensus       147 Vad~~~gl~~~-d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  225 (406)
                      |+....|+..+ |.+++....-...  +.   .+..       .+|.-.+.              +..+           
T Consensus       509 vsa~~~Gilkfw~f~~k~l~~~l~l--~~---~~~~-------iv~hr~s~--------------l~a~-----------  551 (910)
T KOG1539|consen  509 VSAGADGILKFWDFKKKVLKKSLRL--GS---SITG-------IVYHRVSD--------------LLAI-----------  551 (910)
T ss_pred             EEccCcceEEEEecCCcceeeeecc--CC---Ccce-------eeeeehhh--------------hhhh-----------
Confidence            88777786654 5443321110000  10   1112       22222211              1110           


Q ss_pred             cCCCCeEEEEeCCCCeEEEeccc-CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECC
Q 015463          226 TKDTGRVLKYDPTTKQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNE  304 (406)
Q Consensus       226 ~~~~g~l~~~d~~t~~~~~~~~~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~  304 (406)
                      ...+=.+..||..|.++..-..+ -..-+.+++|+||+.+..+.. .+.|..|++-..  .-...+. .+.-+-++.+++
T Consensus       552 ~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasm-D~tIr~wDlpt~--~lID~~~-vd~~~~sls~SP  627 (910)
T KOG1539|consen  552 ALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASM-DSTIRTWDLPTG--TLIDGLL-VDSPCTSLSFSP  627 (910)
T ss_pred             hcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeec-CCcEEEEeccCc--ceeeeEe-cCCcceeeEECC
Confidence            01122488889877654332222 234578999999998876654 467888887421  1111121 122245778889


Q ss_pred             CCCEEEEEccC
Q 015463          305 KGEFWVAIHCR  315 (406)
Q Consensus       305 ~G~lwv~~~~~  315 (406)
                      +|.+.++.+.+
T Consensus       628 ngD~LAT~Hvd  638 (910)
T KOG1539|consen  628 NGDFLATVHVD  638 (910)
T ss_pred             CCCEEEEEEec
Confidence            99988887654

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=95.91  E-value=1.2  Score=43.04  Aligned_cols=185  Identities=20%  Similarity=0.153  Sum_probs=98.0

Q ss_pred             cCcceE-EEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCC-C-cE
Q 015463           69 QGPESM-AFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT-G-DL  145 (406)
Q Consensus        69 ~gpe~i-~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~-g-~L  145 (406)
                      ..|-+. .+..+++.+.||+.+|.+..|+...........                   .+ ..+.-++.|.|.. + +|
T Consensus       175 ~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~-------------------gH-~~~v~~~~fhP~~~~~~l  234 (459)
T KOG0272|consen  175 TRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLR-------------------GH-TSRVGAAVFHPVDSDLNL  234 (459)
T ss_pred             CCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEe-------------------cc-ccceeeEEEccCCCccce
Confidence            456444 456788889999999988888765211111110                   01 2345567888741 2 45


Q ss_pred             EEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcc
Q 015463          146 YIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKI  225 (406)
Q Consensus       146 ~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  225 (406)
                      .-|..++.+..++.++.  +.+.. ..+- ...+..+++.|+|.+..|.+.. .                          
T Consensus       235 at~s~Dgtvklw~~~~e--~~l~~-l~gH-~~RVs~VafHPsG~~L~TasfD-~--------------------------  283 (459)
T KOG0272|consen  235 ATASADGTVKLWKLSQE--TPLQD-LEGH-LARVSRVAFHPSGKFLGTASFD-S--------------------------  283 (459)
T ss_pred             eeeccCCceeeeccCCC--cchhh-hhcc-hhhheeeeecCCCceeeecccc-c--------------------------
Confidence            55555554555554442  22221 1221 2457789999999988886531 1                          


Q ss_pred             cCCCCeEEEEeCCCCeEEEecccCC-CcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCC---CceE
Q 015463          226 TKDTGRVLKYDPTTKQTTVLLRNLQ-FPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYP---DNVR  301 (406)
Q Consensus       226 ~~~~g~l~~~d~~t~~~~~~~~~~~-~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~p---d~i~  301 (406)
                         +-+|  ||..|++.-.+.++.. ...++++.+||. |..+ .+...+-|+|-  -++++...|.+  |..   -++.
T Consensus       284 ---tWRl--WD~~tk~ElL~QEGHs~~v~~iaf~~DGS-L~~t-GGlD~~~RvWD--lRtgr~im~L~--gH~k~I~~V~  352 (459)
T KOG0272|consen  284 ---TWRL--WDLETKSELLLQEGHSKGVFSIAFQPDGS-LAAT-GGLDSLGRVWD--LRTGRCIMFLA--GHIKEILSVA  352 (459)
T ss_pred             ---chhh--cccccchhhHhhcccccccceeEecCCCc-eeec-cCccchhheee--cccCcEEEEec--ccccceeeEe
Confidence               1233  3555544333334432 345788999996 3333 22334444441  13455555532  322   3567


Q ss_pred             ECCCCCEEEEEccC
Q 015463          302 TNEKGEFWVAIHCR  315 (406)
Q Consensus       302 ~d~~G~lwv~~~~~  315 (406)
                      ++++|-..++....
T Consensus       353 fsPNGy~lATgs~D  366 (459)
T KOG0272|consen  353 FSPNGYHLATGSSD  366 (459)
T ss_pred             ECCCceEEeecCCC
Confidence            88888544444333

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=95.90  E-value=0.82  Score=44.17  Aligned_cols=186  Identities=18%  Similarity=0.202  Sum_probs=103.4

Q ss_pred             cCcccCcceEEEcCC--CCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCC
Q 015463           65 LNQIQGPESMAFDPL--GRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT  142 (406)
Q Consensus        65 ~~~~~gpe~i~~d~~--g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~  142 (406)
                      .+.....-++.+.|.  +.-+-++..||.+..|+.+.-+.+.                    ..+....|.--++|.| +
T Consensus       214 ~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~--------------------~l~gH~~RVs~VafHP-s  272 (459)
T KOG0272|consen  214 RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQ--------------------DLEGHLARVSRVAFHP-S  272 (459)
T ss_pred             eccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchh--------------------hhhcchhhheeeeecC-C
Confidence            344334445555553  3348889999988777654212221                    1222235566789999 7


Q ss_pred             CcEEEEeCCC-cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCC
Q 015463          143 GDLYIADAYF-GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPS  221 (406)
Q Consensus       143 g~L~Vad~~~-gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~  221 (406)
                      |......++. .=..+|..++. +.+..  .|- ...+.++++.+||.+-.|..-                         
T Consensus       273 G~~L~TasfD~tWRlWD~~tk~-ElL~Q--EGH-s~~v~~iaf~~DGSL~~tGGl-------------------------  323 (459)
T KOG0272|consen  273 GKFLGTASFDSTWRLWDLETKS-ELLLQ--EGH-SKGVFSIAFQPDGSLAATGGL-------------------------  323 (459)
T ss_pred             Cceeeecccccchhhcccccch-hhHhh--ccc-ccccceeEecCCCceeeccCc-------------------------
Confidence            8766665553 33345666553 22221  121 235778999999999877531                         


Q ss_pred             CCcccCCCCeEEEEeCCCCeEEEeccc-CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCC---C
Q 015463          222 PIKITKDTGRVLKYDPTTKQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGY---P  297 (406)
Q Consensus       222 ~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~---p  297 (406)
                           ...|+|  +|..+|+...++.+ .....+|+++|+| +.+.+....+.+.++++...    .+.+ .+|+.   -
T Consensus       324 -----D~~~Rv--WDlRtgr~im~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r----~~ly-~ipAH~nlV  390 (459)
T KOG0272|consen  324 -----DSLGRV--WDLRTGRCIMFLAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMR----SELY-TIPAHSNLV  390 (459)
T ss_pred             -----cchhhe--eecccCcEEEEecccccceeeEeECCCc-eEEeecCCCCcEEEeeeccc----ccce-ecccccchh
Confidence                 112555  46667766555544 3344689999988 45455555555555565432    1121 23332   3


Q ss_pred             CceEECCC-CCEEEEEc
Q 015463          298 DNVRTNEK-GEFWVAIH  313 (406)
Q Consensus       298 d~i~~d~~-G~lwv~~~  313 (406)
                      ..+.++++ |.+.++..
T Consensus       391 S~Vk~~p~~g~fL~Tas  407 (459)
T KOG0272|consen  391 SQVKYSPQEGYFLVTAS  407 (459)
T ss_pred             hheEecccCCeEEEEcc
Confidence            45677774 54555443

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=95.87  E-value=0.34  Score=51.75  Aligned_cols=197  Identities=17%  Similarity=0.180  Sum_probs=100.8

Q ss_pred             eEEEcCCCCeeEEEe--cCCEEEEEeCCcee-EEEeecCC-CccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463           73 SMAFDPLGRGPYTGV--ADGRILFWDGLKWT-DFAFTSNN-RSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (406)
Q Consensus        73 ~i~~d~~g~~ly~g~--~~g~I~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va  148 (406)
                      +|.+.++|..+-+|.  .||++..|+.+.+- +....... ....|.          +....+....++|.++...|++|
T Consensus        18 SIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~----------m~~h~~sv~CVR~S~dG~~lAsG   87 (942)
T KOG0973|consen   18 SIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCT----------MDDHDGSVNCVRFSPDGSYLASG   87 (942)
T ss_pred             EEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhhee----------eccccCceeEEEECCCCCeEeec
Confidence            566778887555666  56777777655111 11001110 011232          22224556678899844456666


Q ss_pred             eCCCcEEEEeCCC-CeEEEccc--------------ccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccc
Q 015463          149 DAYFGLMKVGPEG-GLATSLAT--------------EAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQL  213 (406)
Q Consensus       149 d~~~gl~~~d~~~-~~~~~l~~--------------~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~  213 (406)
                      ..++-+.++.... +.-..+..              ...+ .-..+.+++.++++.+.++-+-                 
T Consensus        88 SDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~-H~~DV~Dv~Wsp~~~~lvS~s~-----------------  149 (942)
T KOG0973|consen   88 SDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRG-HDSDVLDVNWSPDDSLLVSVSL-----------------  149 (942)
T ss_pred             cCcceEEEeeecccCCcccccccccccccceeeEEEEEec-CCCccceeccCCCccEEEEecc-----------------
Confidence            5544444444431 00000000              0001 1234667888888887777542                 


Q ss_pred             cccCCCCCCCcccCCCCeEEEEeCCCCeEEEec-ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCC---CCcceee
Q 015463          214 CSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE---KAGNLEA  289 (406)
Q Consensus       214 ~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~---~~~~~~~  289 (406)
                                     ++.+..||..+.+..... ......-|++++|-|+++ .+.+ ..|..++|....   ...-.+.
T Consensus       150 ---------------DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~-ASqs-dDrtikvwrt~dw~i~k~It~p  212 (942)
T KOG0973|consen  150 ---------------DNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYF-ASQS-DDRTLKVWRTSDWGIEKSITKP  212 (942)
T ss_pred             ---------------cceEEEEccccceeeeeeecccccccceEECCccCee-eeec-CCceEEEEEcccceeeEeeccc
Confidence                           467999998876543333 334567899999999854 3444 445444443211   0111223


Q ss_pred             eecCCCCCC--ceEECCCCCEEEEEcc
Q 015463          290 FAILPGYPD--NVRTNEKGEFWVAIHC  314 (406)
Q Consensus       290 ~~~l~g~pd--~i~~d~~G~lwv~~~~  314 (406)
                      |.+.++.+-  -+..++||.+.++.++
T Consensus       213 f~~~~~~T~f~RlSWSPDG~~las~nA  239 (942)
T KOG0973|consen  213 FEESPLTTFFLRLSWSPDGHHLASPNA  239 (942)
T ss_pred             hhhCCCcceeeecccCCCcCeecchhh
Confidence            333333222  2334788888877654

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=95.85  E-value=1.3  Score=40.18  Aligned_cols=128  Identities=12%  Similarity=0.110  Sum_probs=76.8

Q ss_pred             eEEEecCCEEEEEeCC---ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCCCcEEEEeC
Q 015463           83 PYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGP  159 (406)
Q Consensus        83 ly~g~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~~gl~~~d~  159 (406)
                      +..++.++.|..||-.   .++.+..                        ...+..+-+.. +|++.....+.+|..+|+
T Consensus       158 iLSSadd~tVRLWD~rTgt~v~sL~~------------------------~s~VtSlEvs~-dG~ilTia~gssV~Fwda  212 (334)
T KOG0278|consen  158 ILSSADDKTVRLWDHRTGTEVQSLEF------------------------NSPVTSLEVSQ-DGRILTIAYGSSVKFWDA  212 (334)
T ss_pred             EEeeccCCceEEEEeccCcEEEEEec------------------------CCCCcceeecc-CCCEEEEecCceeEEecc
Confidence            5666778888888865   2222211                        12245677776 788776666678888888


Q ss_pred             CCCe-EEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCC
Q 015463          160 EGGL-ATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPT  238 (406)
Q Consensus       160 ~~~~-~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~  238 (406)
                      ++=. ++.+...      ..+++-...|+-.+|++-                                ..+..+++||-.
T Consensus       213 ksf~~lKs~k~P------~nV~SASL~P~k~~fVaG--------------------------------ged~~~~kfDy~  254 (334)
T KOG0278|consen  213 KSFGLLKSYKMP------CNVESASLHPKKEFFVAG--------------------------------GEDFKVYKFDYN  254 (334)
T ss_pred             ccccceeeccCc------cccccccccCCCceEEec--------------------------------CcceEEEEEecc
Confidence            6422 1211110      123333455666788874                                234679999999


Q ss_pred             CCeEEEe-cccCCCc-ceEEEecCCCEEEEEeCCCCeE
Q 015463          239 TKQTTVL-LRNLQFP-NGLSLSKDKSFFVFCEGSVGRL  274 (406)
Q Consensus       239 t~~~~~~-~~~~~~~-ngi~l~~d~~~l~v~~t~~~~i  274 (406)
                      |++-... ..+...| ..+.++|||. +|.+.+..+.|
T Consensus       255 TgeEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGTi  291 (334)
T KOG0278|consen  255 TGEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGTI  291 (334)
T ss_pred             CCceeeecccCCCCceEEEEECCCCc-eeeccCCCceE
Confidence            8865444 3444444 6889999997 66665544433

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=95.80  E-value=1.4  Score=42.99  Aligned_cols=70  Identities=17%  Similarity=0.338  Sum_probs=45.3

Q ss_pred             EeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccC
Q 015463          138 FDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSL  217 (406)
Q Consensus       138 ~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~  217 (406)
                      .+. +|++|++...+.|+.+|+++++.. ......+ .....+.-.+..+|+||+++..                     
T Consensus        65 ~~~-dg~v~~~~~~G~i~A~d~~~g~~~-W~~~~~~-~~~~~~~~~~~~~G~i~~g~~~---------------------  120 (370)
T COG1520          65 ADG-DGTVYVGTRDGNIFALNPDTGLVK-WSYPLLG-AVAQLSGPILGSDGKIYVGSWD---------------------  120 (370)
T ss_pred             Eee-CCeEEEecCCCcEEEEeCCCCcEE-ecccCcC-cceeccCceEEeCCeEEEeccc---------------------
Confidence            344 789999966667999999998742 1111111 0122333344449999999854                     


Q ss_pred             CCCCCCcccCCCCeEEEEeCCCCeEE
Q 015463          218 NDPSPIKITKDTGRVLKYDPTTKQTT  243 (406)
Q Consensus       218 ~~~~~~~~~~~~g~l~~~d~~t~~~~  243 (406)
                                  |.++++|..+|+..
T Consensus       121 ------------g~~y~ld~~~G~~~  134 (370)
T COG1520         121 ------------GKLYALDASTGTLV  134 (370)
T ss_pred             ------------ceEEEEECCCCcEE
Confidence                        57999999777654

>PRK13684 Ycf48-like protein; Provisional

Probab=95.69  E-value=2.2  Score=41.19  Aligned_cols=58  Identities=14%  Similarity=0.112  Sum_probs=33.0

Q ss_pred             cceEEEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEe
Q 015463          132 RPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTD  194 (406)
Q Consensus       132 ~p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~  194 (406)
                      .+..+.... ++.+|++....+|++-+-.+...+.+....    ...++++..+++|.+++..
T Consensus       133 ~~~~i~~~~-~~~~~~~g~~G~i~~S~DgG~tW~~~~~~~----~g~~~~i~~~~~g~~v~~g  190 (334)
T PRK13684        133 SPYLITALG-PGTAEMATNVGAIYRTTDGGKNWEALVEDA----AGVVRNLRRSPDGKYVAVS  190 (334)
T ss_pred             CceEEEEEC-CCcceeeeccceEEEECCCCCCceeCcCCC----cceEEEEEECCCCeEEEEe
Confidence            455555444 566777766556766654444444443322    2346778888887666554

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=95.62  E-value=0.54  Score=46.17  Aligned_cols=107  Identities=12%  Similarity=0.180  Sum_probs=67.1

Q ss_pred             cCCcceEEEEeCCCCc-EEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccc
Q 015463          129 ICGRPLGLRFDKKTGD-LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKE  207 (406)
Q Consensus       129 ~~~~p~gi~~d~~~g~-L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~  207 (406)
                      ..++...+..++ +|. +.++.....|+.+|.++|.++.+.....    ..+.+++.+++++. ++=+   ++. .|   
T Consensus       400 ~lg~I~av~vs~-dGK~~vvaNdr~el~vididngnv~~idkS~~----~lItdf~~~~nsr~-iAYa---fP~-gy---  466 (668)
T COG4946         400 DLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNVRLIDKSEY----GLITDFDWHPNSRW-IAYA---FPE-GY---  466 (668)
T ss_pred             CccceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCeeEeccccc----ceeEEEEEcCCcee-EEEe---cCc-ce---
Confidence            356677888888 666 6777666789999999998876543322    34667888887753 3321   110 01   


Q ss_pred             cccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEe
Q 015463          208 NIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCE  268 (406)
Q Consensus       208 ~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~  268 (406)
                                          -+..+-.||..+++.-.+...-...-.-|+++|++.||+-.
T Consensus       467 --------------------~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         467 --------------------YTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             --------------------eeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence                                11246667777665544433333334567889999998865

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=95.61  E-value=0.85  Score=48.18  Aligned_cols=137  Identities=14%  Similarity=0.122  Sum_probs=80.2

Q ss_pred             EEEEeCCCCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccc
Q 015463          135 GLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQL  213 (406)
Q Consensus       135 gi~~d~~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~  213 (406)
                      .++++. +|++.++.+. .+|-.++......+......++    -+-+|..+++|++....+.                 
T Consensus       101 ~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a----pVl~l~~~p~~~fLAvss~-----------------  158 (933)
T KOG1274|consen  101 DLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA----PVLQLSYDPKGNFLAVSSC-----------------  158 (933)
T ss_pred             EEEEec-CCcEEEeecCceeEEEEeccccchheeecccCC----ceeeeeEcCCCCEEEEEec-----------------
Confidence            467877 6766655444 5666666544332222222222    2457889999988877543                 


Q ss_pred             cccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCc---------ceEEEecCCCEEEEEeCCCCeEEEEEeeCCCC
Q 015463          214 CSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFP---------NGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKA  284 (406)
Q Consensus       214 ~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~---------ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~  284 (406)
                                     +|.|..||.+++.....+.++...         +-++++|++..+.+.-. .+.|..|+.++-  
T Consensus       159 ---------------dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~-d~~Vkvy~r~~w--  220 (933)
T KOG1274|consen  159 ---------------DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV-DNTVKVYSRKGW--  220 (933)
T ss_pred             ---------------CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc-CCeEEEEccCCc--
Confidence                           588999999988765544443222         34679999666666544 578999987642  


Q ss_pred             cceeeee---cC-CCCCCceEECCCCCEEEEEc
Q 015463          285 GNLEAFA---IL-PGYPDNVRTNEKGEFWVAIH  313 (406)
Q Consensus       285 ~~~~~~~---~l-~g~pd~i~~d~~G~lwv~~~  313 (406)
                        ...|.   +. ..--..+..++.|.+.++..
T Consensus       221 --e~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~  251 (933)
T KOG1274|consen  221 --ELQFKLRDKLSSSKFSDLQWSPNGKYIAAST  251 (933)
T ss_pred             --eeheeecccccccceEEEEEcCCCcEEeeec
Confidence              22222   00 00012345677876655544

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=95.55  E-value=0.81  Score=44.15  Aligned_cols=157  Identities=14%  Similarity=0.091  Sum_probs=92.3

Q ss_pred             cCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC
Q 015463           65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK  141 (406)
Q Consensus        65 ~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~  141 (406)
                      ++...+..-|.++||.+.+.+...+.-+..||.+   ....+...                      .+..+...+..++
T Consensus       266 vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~----------------------~~~S~~sc~W~pD  323 (519)
T KOG0293|consen  266 VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSG----------------------LGFSVSSCAWCPD  323 (519)
T ss_pred             ecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccC----------------------cCCCcceeEEccC
Confidence            4455556777888888856655555556667655   11112110                      1233455667773


Q ss_pred             CCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCC
Q 015463          142 TGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPS  221 (406)
Q Consensus       142 ~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~  221 (406)
                      .-.+.++...++++.+|.++.......    +.....+.++++..||.-.++...                         
T Consensus       324 g~~~V~Gs~dr~i~~wdlDgn~~~~W~----gvr~~~v~dlait~Dgk~vl~v~~-------------------------  374 (519)
T KOG0293|consen  324 GFRFVTGSPDRTIIMWDLDGNILGNWE----GVRDPKVHDLAITYDGKYVLLVTV-------------------------  374 (519)
T ss_pred             CceeEecCCCCcEEEecCCcchhhccc----ccccceeEEEEEcCCCcEEEEEec-------------------------
Confidence            334555555678999999877543332    222345789999999954433211                         


Q ss_pred             CCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          222 PIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       222 ~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                             +..+..|+.++..-+-+...-..-..+++|.|++..++.- ..+.+..++++
T Consensus       375 -------d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL-~~qei~LWDl~  425 (519)
T KOG0293|consen  375 -------DKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNL-QDQEIHLWDLE  425 (519)
T ss_pred             -------ccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEc-ccCeeEEeecc
Confidence                   1346666666543322333333445688999999877764 45778888776

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=95.30  E-value=1.1  Score=41.93  Aligned_cols=164  Identities=14%  Similarity=0.161  Sum_probs=85.0

Q ss_pred             cCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC--cee-EEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC
Q 015463           65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWT-DFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK  141 (406)
Q Consensus        65 ~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~  141 (406)
                      -++-.-+|+-.++|||+.+.+|+-||-|-.|+-.  +++ .+.....+               ..-......+.|.|+. 
T Consensus       210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd---------------~fMMmd~aVlci~FSR-  273 (508)
T KOG0275|consen  210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD---------------NFMMMDDAVLCISFSR-  273 (508)
T ss_pred             cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhc---------------ceeecccceEEEeecc-
Confidence            3455679999999999988899999988888643  111 11100000               0001123356778887 


Q ss_pred             CCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCC
Q 015463          142 TGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDP  220 (406)
Q Consensus       142 ~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~  220 (406)
                      +.++....+. +.|-.+...+|....   .++..--..+.++.+.+|+.-..+.+.                        
T Consensus       274 DsEMlAsGsqDGkIKvWri~tG~ClR---rFdrAHtkGvt~l~FSrD~SqiLS~sf------------------------  326 (508)
T KOG0275|consen  274 DSEMLASGSQDGKIKVWRIETGQCLR---RFDRAHTKGVTCLSFSRDNSQILSASF------------------------  326 (508)
T ss_pred             cHHHhhccCcCCcEEEEEEecchHHH---HhhhhhccCeeEEEEccCcchhhcccc------------------------
Confidence            4444433333 334444444554211   111111234667777777644343321                        


Q ss_pred             CCCcccCCCCeEEEEeCCCCeE-EEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          221 SPIKITKDTGRVLKYDPTTKQT-TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       221 ~~~~~~~~~g~l~~~d~~t~~~-~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                              +-.+..--.++|+. +.+...-.+.|-..+++||..++-+ +..+.|..++.+
T Consensus       327 --------D~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisa-SsDgtvkvW~~K  378 (508)
T KOG0275|consen  327 --------DQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISA-SSDGTVKVWHGK  378 (508)
T ss_pred             --------cceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEe-cCCccEEEecCc
Confidence                    01111111222322 2222333566778899999877554 445677777655

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.25  E-value=4.3  Score=41.80  Aligned_cols=124  Identities=15%  Similarity=0.138  Sum_probs=65.7

Q ss_pred             CCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCC-cceEEEEeCCCCcEEEEeCCCcEEE
Q 015463           79 LGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICG-RPLGLRFDKKTGDLYIADAYFGLMK  156 (406)
Q Consensus        79 ~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~gi~~d~~~g~L~Vad~~~gl~~  156 (406)
                      +| .+|+++.++.|+.+|.. .............. .          .....|. ...++++.  ++.+|+++....|+.
T Consensus        69 ~g-~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~-~----------~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~A  134 (527)
T TIGR03075        69 DG-VMYVTTSYSRVYALDAKTGKELWKYDPKLPDD-V----------IPVMCCDVVNRGVALY--DGKVFFGTLDARLVA  134 (527)
T ss_pred             CC-EEEEECCCCcEEEEECCCCceeeEecCCCCcc-c----------ccccccccccccceEE--CCEEEEEcCCCEEEE
Confidence            44 49999989999999976 22222211100000 0          0000010 01234555  578999988888999


Q ss_pred             EeCCCCeEEEcccccCCc-ccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEE
Q 015463          157 VGPEGGLATSLATEAEGV-PLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKY  235 (406)
Q Consensus       157 ~d~~~~~~~~l~~~~~~~-~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~  235 (406)
                      +|.++|+..=-....+-. .......-++. +|.+|++.++..+                           ...|.|+.|
T Consensus       135 LDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g~Vivg~~~~~~---------------------------~~~G~v~Al  186 (527)
T TIGR03075       135 LDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KGKVITGISGGEF---------------------------GVRGYVTAY  186 (527)
T ss_pred             EECCCCCEEeecccccccccccccCCcEEE-CCEEEEeeccccc---------------------------CCCcEEEEE
Confidence            999988753111110000 00011112222 6789988653111                           124789999


Q ss_pred             eCCCCeEEE
Q 015463          236 DPTTKQTTV  244 (406)
Q Consensus       236 d~~t~~~~~  244 (406)
                      |.+||+..-
T Consensus       187 D~~TG~~lW  195 (527)
T TIGR03075       187 DAKTGKLVW  195 (527)
T ss_pred             ECCCCceeE
Confidence            999997643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=95.23  E-value=0.18  Score=47.72  Aligned_cols=185  Identities=12%  Similarity=0.087  Sum_probs=91.6

Q ss_pred             cccCcceEEEcCCC-CeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcE
Q 015463           67 QIQGPESMAFDPLG-RGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL  145 (406)
Q Consensus        67 ~~~gpe~i~~d~~g-~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L  145 (406)
                      .-.|..++|-.+.- ..+.+|+.||.|..||..+...+..                    .+...|-..||+++. +..+
T Consensus        65 HrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~--------------------f~AH~G~V~Gi~v~~-~~~~  123 (433)
T KOG0268|consen   65 HRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT--------------------FKAHEGLVRGICVTQ-TSFF  123 (433)
T ss_pred             cccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe--------------------eecccCceeeEEecc-cceE
Confidence            33456777777654 3478999999999999762111111                    111135567999986 5667


Q ss_pred             EEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeC--------CCchhhhccccccccccccccC
Q 015463          146 YIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDS--------STNYQRRQMQKENIPLQLCSSL  217 (406)
Q Consensus       146 ~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~--------~~~~~~~~~~~~~~~~~~~~e~  217 (406)
                      .+++. +.+-++-.++..+..+....      ...+|.-...++++.|..        ....+.+++.+.-+.+..+--.
T Consensus       124 tvgdD-KtvK~wk~~~~p~~tilg~s------~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfN  196 (433)
T KOG0268|consen  124 TVGDD-KTVKQWKIDGPPLHTILGKS------VYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFN  196 (433)
T ss_pred             EecCC-cceeeeeccCCcceeeeccc------cccccccccccccccccCceeeecccccCCccceeecCCCceeEEecC
Confidence            77764 44444433332223222110      011122211222222211        1111111111100000000000


Q ss_pred             CCCCCCcc-cCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          218 NDPSPIKI-TKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       218 ~~~~~~~~-~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                      ...+.|.. ...++.++.||..+++...-...-..+|+|++.| +.+.+++......++.|+..
T Consensus       197 pvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR  259 (433)
T KOG0268|consen  197 PVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMR  259 (433)
T ss_pred             CCcchheeeeccCCceEEEecccCCccceeeeeccccceecCc-cccceeeccccccceehhhh
Confidence            01111221 2246779999988765432222234679999999 77888888778899999865

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=95.11  E-value=0.45  Score=49.68  Aligned_cols=150  Identities=19%  Similarity=0.111  Sum_probs=91.7

Q ss_pred             ceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCC
Q 015463           72 ESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAY  151 (406)
Q Consensus        72 e~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~  151 (406)
                      -++++|.-++.+.+++.+|-+..|+-++........                     ....+.++......+-+.++...
T Consensus       497 ~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~---------------------l~~~~~~iv~hr~s~l~a~~~dd  555 (910)
T KOG1539|consen  497 TGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR---------------------LGSSITGIVYHRVSDLLAIALDD  555 (910)
T ss_pred             eEEEecCCCceEEEccCcceEEEEecCCcceeeeec---------------------cCCCcceeeeeehhhhhhhhcCc
Confidence            578898888878888888877777765222111110                     01123345544423444444445


Q ss_pred             CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCe
Q 015463          152 FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGR  231 (406)
Q Consensus       152 ~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~  231 (406)
                      ..|..+|..+.++..   .+.|- .+.++++++.+||+-.++.+.                                ++.
T Consensus       556 f~I~vvD~~t~kvvR---~f~gh-~nritd~~FS~DgrWlisasm--------------------------------D~t  599 (910)
T KOG1539|consen  556 FSIRVVDVVTRKVVR---EFWGH-GNRITDMTFSPDGRWLISASM--------------------------------DST  599 (910)
T ss_pred             eeEEEEEchhhhhhH---Hhhcc-ccceeeeEeCCCCcEEEEeec--------------------------------CCc
Confidence            688999987654322   22221 246899999999986666542                                366


Q ss_pred             EEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEE
Q 015463          232 VLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYW  278 (406)
Q Consensus       232 l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~  278 (406)
                      +..||.-|+...-...--.-+..+.++|.+++|-.+..+...|+.+.
T Consensus       600 Ir~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  600 IRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             EEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence            88888877754221111122346889999999888877767777654

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.10  E-value=1.3  Score=41.02  Aligned_cols=20  Identities=30%  Similarity=0.438  Sum_probs=16.8

Q ss_pred             cccccceEEcCCCCEEEEeC
Q 015463          176 LRFTNDLDIDDEGNVYFTDS  195 (406)
Q Consensus       176 ~~~~~~l~~d~dG~ly~t~~  195 (406)
                      ...+..++.++||++|++..
T Consensus       225 ~lSiRHld~g~dgtvwfgcQ  244 (366)
T COG3490         225 QLSIRHLDIGRDGTVWFGCQ  244 (366)
T ss_pred             hcceeeeeeCCCCcEEEEEE
Confidence            34678899999999999974

>PLN00181 protein SPA1-RELATED; Provisional

Probab=95.07  E-value=6.3  Score=42.78  Aligned_cols=185  Identities=11%  Similarity=0.086  Sum_probs=98.0

Q ss_pred             ceEEEcC-CCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEE-Ee
Q 015463           72 ESMAFDP-LGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI-AD  149 (406)
Q Consensus        72 e~i~~d~-~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~V-ad  149 (406)
                      .++++.+ .++.+.++..+|.|..|+....+.+....                    ...+...++++++.++++++ +.
T Consensus       536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~--------------------~H~~~V~~l~~~p~~~~~L~Sgs  595 (793)
T PLN00181        536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK--------------------EHEKRVWSIDYSSADPTLLASGS  595 (793)
T ss_pred             eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec--------------------CCCCCEEEEEEcCCCCCEEEEEc
Confidence            5667765 35668888999999999876222221111                    11244678889863566554 44


Q ss_pred             CCCcEEEEeCCCCeEEEcccccCCcccccccceEE-cCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCC
Q 015463          150 AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDI-DDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKD  228 (406)
Q Consensus       150 ~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~-d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  228 (406)
                      ..+.|..+|..++........     ...+..+.+ .++|.+.++.+.                                
T Consensus       596 ~Dg~v~iWd~~~~~~~~~~~~-----~~~v~~v~~~~~~g~~latgs~--------------------------------  638 (793)
T PLN00181        596 DDGSVKLWSINQGVSIGTIKT-----KANICCVQFPSESGRSLAFGSA--------------------------------  638 (793)
T ss_pred             CCCEEEEEECCCCcEEEEEec-----CCCeEEEEEeCCCCCEEEEEeC--------------------------------
Confidence            445688888876543211111     112445555 346766665432                                


Q ss_pred             CCeEEEEeCCCCeE--EEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCc-ceeeeecCCCC---CCceEE
Q 015463          229 TGRVLKYDPTTKQT--TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAG-NLEAFAILPGY---PDNVRT  302 (406)
Q Consensus       229 ~g~l~~~d~~t~~~--~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~-~~~~~~~l~g~---pd~i~~  302 (406)
                      +|.+..||..+.+.  ..+.........+++. ++..++ +....+.|..+++.....+ ....+..+.|.   ...+.+
T Consensus       639 dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lv-s~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~  716 (793)
T PLN00181        639 DHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLV-SSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGL  716 (793)
T ss_pred             CCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEE-EEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEE
Confidence            47799999875532  2222111223456675 566554 4444567777776421111 01111122222   334667


Q ss_pred             CCCCCEEEEEccC
Q 015463          303 NEKGEFWVAIHCR  315 (406)
Q Consensus       303 d~~G~lwv~~~~~  315 (406)
                      +++|.+.++....
T Consensus       717 s~~~~~lasgs~D  729 (793)
T PLN00181        717 SVSDGYIATGSET  729 (793)
T ss_pred             cCCCCEEEEEeCC
Confidence            8888766655443

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=94.96  E-value=5.2  Score=41.21  Aligned_cols=17  Identities=24%  Similarity=0.393  Sum_probs=14.9

Q ss_pred             eeEEEecCCEEEEEeCC
Q 015463           82 GPYTGVADGRILFWDGL   98 (406)
Q Consensus        82 ~ly~g~~~g~I~~~~~~   98 (406)
                      .+|+++.+++|+.+|..
T Consensus       122 ~v~v~t~dg~l~ALDa~  138 (527)
T TIGR03075       122 KVFFGTLDARLVALDAK  138 (527)
T ss_pred             EEEEEcCCCEEEEEECC
Confidence            38999999999999976

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=94.95  E-value=0.97  Score=39.88  Aligned_cols=120  Identities=18%  Similarity=0.167  Sum_probs=71.3

Q ss_pred             cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeE
Q 015463          153 GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRV  232 (406)
Q Consensus       153 gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l  232 (406)
                      .|++++..+.....+.....+    .+.+++..|+|+-++.-.+                              .....+
T Consensus        40 ~l~~~~~~~~~~~~i~l~~~~----~I~~~~WsP~g~~favi~g------------------------------~~~~~v   85 (194)
T PF08662_consen   40 ELFYLNEKNIPVESIELKKEG----PIHDVAWSPNGNEFAVIYG------------------------------SMPAKV   85 (194)
T ss_pred             EEEEEecCCCccceeeccCCC----ceEEEEECcCCCEEEEEEc------------------------------cCCccc
Confidence            578887665544443222111    2778999999965433211                              112357


Q ss_pred             EEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCC--CCeEEEEEeeCCCCcceeeeec-CCCCCCceEECCCCCEE
Q 015463          233 LKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS--VGRLHKYWLIGEKAGNLEAFAI-LPGYPDNVRTNEKGEFW  309 (406)
Q Consensus       233 ~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~--~~~i~~~~~~g~~~~~~~~~~~-l~g~pd~i~~d~~G~lw  309 (406)
                      ..||.+...+..+.  -...|.|.++|+|+++.++...  .+.|..++...     .+.+.. -......++.+++|++.
T Consensus        86 ~lyd~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-----~~~i~~~~~~~~t~~~WsPdGr~~  158 (194)
T PF08662_consen   86 TLYDVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-----KKKISTFEHSDATDVEWSPDGRYL  158 (194)
T ss_pred             EEEcCcccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-----CEEeeccccCcEEEEEEcCCCCEE
Confidence            77887644444433  2356789999999999887643  34577777651     222221 11224567789999987


Q ss_pred             EEEc
Q 015463          310 VAIH  313 (406)
Q Consensus       310 v~~~  313 (406)
                      ++..
T Consensus       159 ~ta~  162 (194)
T PF08662_consen  159 ATAT  162 (194)
T ss_pred             EEEE
Confidence            7654

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=94.83  E-value=5.1  Score=40.52  Aligned_cols=170  Identities=21%  Similarity=0.221  Sum_probs=90.9

Q ss_pred             ceEEEcCCCCeeE-EEecCCEEEEEeCC------------ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEE--
Q 015463           72 ESMAFDPLGRGPY-TGVADGRILFWDGL------------KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGL--  136 (406)
Q Consensus        72 e~i~~d~~g~~ly-~g~~~g~I~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi--  136 (406)
                      -.|-+.+||..++ +|++.-+|..++..            ..+.|...+.+++..|-.  ....+++.....|+-+++  
T Consensus        55 t~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L--~~DR~IefHak~G~hy~~RI  132 (703)
T KOG2321|consen   55 TRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFL--QNDRTIEFHAKYGRHYRTRI  132 (703)
T ss_pred             ceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEe--ecCceeeehhhcCeeeeeec
Confidence            4677889999555 47777778777643            223343344444432210  001111222223333333  


Q ss_pred             -------EEeCCCCcEEEEeCCCcEEEEeCCCCeEEE-cccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccc
Q 015463          137 -------RFDKKTGDLYIADAYFGLMKVGPEGGLATS-LATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKEN  208 (406)
Q Consensus       137 -------~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~-l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~  208 (406)
                             +.+.-.-.||++.++.-|||++.+.|.+.. +...     ...+|.+.+.+...|..+               
T Consensus       133 P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~-----~~~lN~v~in~~hgLla~---------------  192 (703)
T KOG2321|consen  133 PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETD-----SGELNVVSINEEHGLLAC---------------  192 (703)
T ss_pred             CcCCccccccCCCccEEEeecCcceEEEEccccccccccccc-----cccceeeeecCccceEEe---------------
Confidence                   333223458888888889999998775422 2111     112444455443333322               


Q ss_pred             ccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec------------ccCCCcceEEEecCCCEEEEEeCCCCeEEE
Q 015463          209 IPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL------------RNLQFPNGLSLSKDKSFFVFCEGSVGRLHK  276 (406)
Q Consensus       209 ~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~------------~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~  276 (406)
                                       +..+|.+-.+||.+++....+            +....+..+.++.||= -+-+.|..+.++.
T Consensus       193 -----------------Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL-~~aVGts~G~v~i  254 (703)
T KOG2321|consen  193 -----------------GTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL-HVAVGTSTGSVLI  254 (703)
T ss_pred             -----------------cccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCce-eEEeeccCCcEEE
Confidence                             333577888888876432211            1112244566766653 4455677899999


Q ss_pred             EEeeC
Q 015463          277 YWLIG  281 (406)
Q Consensus       277 ~~~~g  281 (406)
                      |++..
T Consensus       255 yDLRa  259 (703)
T KOG2321|consen  255 YDLRA  259 (703)
T ss_pred             EEccc
Confidence            99863

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.66  E-value=4.1  Score=38.60  Aligned_cols=183  Identities=15%  Similarity=0.215  Sum_probs=79.0

Q ss_pred             CcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEE
Q 015463           70 GPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~V  147 (406)
                      ...+|++..+.+.+.+|. .|.|++=...  .|+........                  ...-+-..|.+.  +++.||
T Consensus        18 ~l~dV~F~d~~~G~~VG~-~g~il~T~DGG~tW~~~~~~~~~------------------~~~~~l~~I~f~--~~~g~i   76 (302)
T PF14870_consen   18 PLLDVAFVDPNHGWAVGA-YGTILKTTDGGKTWQPVSLDLDN------------------PFDYHLNSISFD--GNEGWI   76 (302)
T ss_dssp             -EEEEEESSSS-EEEEET-TTEEEEESSTTSS-EE-----S-----------------------EEEEEEEE--TTEEEE
T ss_pred             ceEEEEEecCCEEEEEec-CCEEEEECCCCccccccccCCCc------------------cceeeEEEEEec--CCceEE
Confidence            345677765556455554 5667766443  56655321100                  001123467776  356777


Q ss_pred             EeCCCcEEEEeCCCCe-EEEcc--cccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCc
Q 015463          148 ADAYFGLMKVGPEGGL-ATSLA--TEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIK  224 (406)
Q Consensus       148 ad~~~gl~~~d~~~~~-~~~l~--~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  224 (406)
                      +.. .|++....++|+ .+.+.  ...++.    +..+....++.+++...                             
T Consensus        77 vG~-~g~ll~T~DgG~tW~~v~l~~~lpgs----~~~i~~l~~~~~~l~~~-----------------------------  122 (302)
T PF14870_consen   77 VGE-PGLLLHTTDGGKTWERVPLSSKLPGS----PFGITALGDGSAELAGD-----------------------------  122 (302)
T ss_dssp             EEE-TTEEEEESSTTSS-EE----TT-SS-----EEEEEEEETTEEEEEET-----------------------------
T ss_pred             EcC-CceEEEecCCCCCcEEeecCCCCCCC----eeEEEEcCCCcEEEEcC-----------------------------
Confidence            654 355555555554 33332  112222    22333333445554432                             


Q ss_pred             ccCCCCeEEEEeCCCCeEEEeccc-CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee-cCCCCCCceEE
Q 015463          225 ITKDTGRVLKYDPTTKQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPGYPDNVRT  302 (406)
Q Consensus       225 ~~~~~g~l~~~d~~t~~~~~~~~~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~-~l~g~pd~i~~  302 (406)
                          .|.+|+=.-.....+.+... ....+.+..++|++.+.++.  .+.+++-+-.|..  ..+.+. .....-.++.+
T Consensus       123 ----~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~--~G~~~~s~~~G~~--~w~~~~r~~~~riq~~gf  194 (302)
T PF14870_consen  123 ----RGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSS--RGNFYSSWDPGQT--TWQPHNRNSSRRIQSMGF  194 (302)
T ss_dssp             ----T--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEET--TSSEEEEE-TT-S--S-EEEE--SSS-EEEEEE
T ss_pred             ----CCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEEC--cccEEEEecCCCc--cceEEccCccceehhcee
Confidence                14566554443444443322 22334566778888666653  5677765533321  111221 11122356778


Q ss_pred             CCCCCEEEEEccC
Q 015463          303 NEKGEFWVAIHCR  315 (406)
Q Consensus       303 d~~G~lwv~~~~~  315 (406)
                      +++|++|+....+
T Consensus       195 ~~~~~lw~~~~Gg  207 (302)
T PF14870_consen  195 SPDGNLWMLARGG  207 (302)
T ss_dssp             -TTS-EEEEETTT
T ss_pred             cCCCCEEEEeCCc
Confidence            8999999988665

>PTZ00420 coronin; Provisional

Probab=94.56  E-value=6.7  Score=40.66  Aligned_cols=117  Identities=9%  Similarity=-0.010  Sum_probs=67.9

Q ss_pred             CcceEEEEeCCCCcEE-EEeCCCcEEEEeCCCCe--EEEccc---ccCCcccccccceEEcCCCCEEEEeCCCchhhhcc
Q 015463          131 GRPLGLRFDKKTGDLY-IADAYFGLMKVGPEGGL--ATSLAT---EAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQM  204 (406)
Q Consensus       131 ~~p~gi~~d~~~g~L~-Vad~~~gl~~~d~~~~~--~~~l~~---~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~  204 (406)
                      +....+++.+.+++++ .+...+.|..+|..++.  ...+..   ...+ ....++.+++++++...+.+.+        
T Consensus        75 ~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g-H~~~V~sVaf~P~g~~iLaSgS--------  145 (568)
T PTZ00420         75 SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG-HKKKISIIDWNPMNYYIMCSSG--------  145 (568)
T ss_pred             CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec-CCCcEEEEEECCCCCeEEEEEe--------
Confidence            4467899988435544 44444667788865431  111000   0111 1235778899998865443321        


Q ss_pred             ccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          205 QKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       205 ~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                                             .++.|..||..+++.............+++++|++.+. +....+.|..|++.
T Consensus       146 -----------------------~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLa-t~s~D~~IrIwD~R  197 (568)
T PTZ00420        146 -----------------------FDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLS-GTCVGKHMHIIDPR  197 (568)
T ss_pred             -----------------------CCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEE-EEecCCEEEEEECC
Confidence                                   14678889988776433222223356788999998664 44445678888865

>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats

Probab=94.55  E-value=0.048  Score=30.45  Aligned_cols=21  Identities=19%  Similarity=0.316  Sum_probs=16.6

Q ss_pred             ccccccceEEcCCCCEEEEeC
Q 015463          175 PLRFTNDLDIDDEGNVYFTDS  195 (406)
Q Consensus       175 ~~~~~~~l~~d~dG~ly~t~~  195 (406)
                      +.+.+.+++.|++|+||+++.
T Consensus         3 ~~n~I~~i~~D~~G~lWigT~   23 (24)
T PF07494_consen    3 PNNNIYSIYEDSDGNLWIGTY   23 (24)
T ss_dssp             SSSCEEEEEE-TTSCEEEEET
T ss_pred             CCCeEEEEEEcCCcCEEEEeC
Confidence            345688999999999999973

These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>KOG4328 consensus WD40 protein [Function unknown]

Probab=94.51  E-value=5.3  Score=39.24  Aligned_cols=153  Identities=10%  Similarity=0.061  Sum_probs=79.9

Q ss_pred             ceEEEcCCC-CeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463           72 ESMAFDPLG-RGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (406)
Q Consensus        72 e~i~~d~~g-~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va  148 (406)
                      .+|.+.+.+ ..+|..++||.|...|-+  ...++......+..                    -.++.+..+++.++++
T Consensus       238 s~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~--------------------fs~~d~~~e~~~vl~~  297 (498)
T KOG4328|consen  238 SGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIW--------------------FSSLDFSAESRSVLFG  297 (498)
T ss_pred             cceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCcccee--------------------eeeccccCCCccEEEe
Confidence            566676543 247888888888777655  22222221111000                    1233444456778888


Q ss_pred             eCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCC
Q 015463          149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKD  228 (406)
Q Consensus       149 d~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  228 (406)
                      +..+-+..+|..++..+...-...   -..++.+++.+-..-++++++.+                              
T Consensus       298 ~~~G~f~~iD~R~~~s~~~~~~lh---~kKI~sv~~NP~~p~~laT~s~D------------------------------  344 (498)
T KOG4328|consen  298 DNVGNFNVIDLRTDGSEYENLRLH---KKKITSVALNPVCPWFLATASLD------------------------------  344 (498)
T ss_pred             ecccceEEEEeecCCccchhhhhh---hcccceeecCCCCchheeecccC------------------------------
Confidence            876555667765543222111111   12577888888766666665421                              


Q ss_pred             CCeEEEEeCCCC--eEEEec---ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEe
Q 015463          229 TGRVLKYDPTTK--QTTVLL---RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWL  279 (406)
Q Consensus       229 ~g~l~~~d~~t~--~~~~~~---~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~  279 (406)
                       +.+..||...-  +...++   ..-...+...+||++..| ++....+.|..|+.
T Consensus       345 -~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl-~TT~~D~~IRv~ds  398 (498)
T KOG4328|consen  345 -QTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTL-LTTCQDNEIRVFDS  398 (498)
T ss_pred             -cceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCce-EeeccCCceEEeec
Confidence             22333333211  110111   111234667899988874 55556678888875

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=94.47  E-value=2.4  Score=44.28  Aligned_cols=112  Identities=14%  Similarity=0.069  Sum_probs=73.4

Q ss_pred             CcceEEEEeCCCCcEEEEeCCCcEEEEeCCCCeE-EEcccccCCcccccccceEEcC-CCCEEEEeCCCchhhhcccccc
Q 015463          131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLA-TSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKEN  208 (406)
Q Consensus       131 ~~p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~-~~l~~~~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~  208 (406)
                      +..+.|...+ ++-|.-+..++.+-.+++..... ..+..      ..++.++++.| |.+.+++-+             
T Consensus       370 ~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~H------ndfVTcVaFnPvDDryFiSGS-------------  429 (712)
T KOG0283|consen  370 ADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFSH------NDFVTCVAFNPVDDRYFISGS-------------  429 (712)
T ss_pred             hhheeccccc-CCeeEeccccccEEeecCCCcceeeEEec------CCeeEEEEecccCCCcEeecc-------------
Confidence            4456677776 66677776677777777665432 22221      25788999988 456666543             


Q ss_pred             ccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCC
Q 015463          209 IPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE  282 (406)
Q Consensus       209 ~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~  282 (406)
                                         -+|++-.++....++..+.+--.....++++|||+..+| .+..+.+..|+..+-
T Consensus       430 -------------------LD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avI-Gt~~G~C~fY~t~~l  483 (712)
T KOG0283|consen  430 -------------------LDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVI-GTFNGYCRFYDTEGL  483 (712)
T ss_pred             -------------------cccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEE-EEeccEEEEEEccCC
Confidence                               246677777766666555444444567999999998755 466788888887764

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=94.46  E-value=4.3  Score=38.80  Aligned_cols=97  Identities=16%  Similarity=0.241  Sum_probs=62.5

Q ss_pred             ccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec-ccCCCcceE
Q 015463          177 RFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL-RNLQFPNGL  255 (406)
Q Consensus       177 ~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~~ngi  255 (406)
                      ..+..+...+||.+|++.+-                               ++..+..+|+++++...+. .++....-+
T Consensus       196 ~pVtsmqwn~dgt~l~tAS~-------------------------------gsssi~iWdpdtg~~~pL~~~glgg~slL  244 (445)
T KOG2139|consen  196 NPVTSMQWNEDGTILVTASF-------------------------------GSSSIMIWDPDTGQKIPLIPKGLGGFSLL  244 (445)
T ss_pred             ceeeEEEEcCCCCEEeeccc-------------------------------CcceEEEEcCCCCCcccccccCCCceeeE
Confidence            34566777889999998753                               1345889999999877765 444444457


Q ss_pred             EEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCCCC
Q 015463          256 SLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE  307 (406)
Q Consensus       256 ~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~  307 (406)
                      -+|||++.++.+..  .++.++|-.. +.-+.|...-.+|.-..-+.++.|+
T Consensus       245 kwSPdgd~lfaAt~--davfrlw~e~-q~wt~erw~lgsgrvqtacWspcGs  293 (445)
T KOG2139|consen  245 KWSPDGDVLFAATC--DAVFRLWQEN-QSWTKERWILGSGRVQTACWSPCGS  293 (445)
T ss_pred             EEcCCCCEEEEecc--cceeeeehhc-ccceecceeccCCceeeeeecCCCC
Confidence            79999998766543  4666666221 1122333443455555556688887

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=94.38  E-value=0.34  Score=48.81  Aligned_cols=127  Identities=20%  Similarity=0.281  Sum_probs=72.6

Q ss_pred             cceeccCcccCcceEEEcCCCCeeEEEecC-----------------CEEEEEeCC---------ceeEEEeecCCCccc
Q 015463           60 SEIKFLNQIQGPESMAFDPLGRGPYTGVAD-----------------GRILFWDGL---------KWTDFAFTSNNRSEL  113 (406)
Q Consensus        60 ~~~~~~~~~~gpe~i~~d~~g~~ly~g~~~-----------------g~I~~~~~~---------~~~~~~~~~~~~~~~  113 (406)
                      +..+....+..||.|++.+....+|+...+                 |+|+||-+.         +|..|...+..... 
T Consensus       408 A~~lGAT~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~-  486 (616)
T COG3211         408 ADKLGATPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVL-  486 (616)
T ss_pred             HHHhCCccccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCcccc-
Confidence            344555678899999999754336665332                 468998654         34455443221100 


Q ss_pred             cCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCCC---------cEEEE---eCCCCeEEEcccccCCcccccccc
Q 015463          114 CNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYF---------GLMKV---GPEGGLATSLATEAEGVPLRFTND  181 (406)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~~---------gl~~~---d~~~~~~~~l~~~~~~~~~~~~~~  181 (406)
                       +...++  . -.....+.|-+|+||+ .|+|||++...         |+..+   ++++++++.+.....+   ..+.+
T Consensus       487 -~~~~~~--~-~~~~~f~~PDnl~fD~-~GrLWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g---~E~tG  558 (616)
T COG3211         487 -EGGASA--N-INANWFNSPDNLAFDP-WGRLWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIG---CEFTG  558 (616)
T ss_pred             -cccccc--C-cccccccCCCceEECC-CCCEEEEecCCCCccCcccccccccccCCCccceeeeeccCCCc---ceeec
Confidence             000000  0 0112356699999999 89999997642         34433   3445555555433222   23557


Q ss_pred             eEEcCCC-CEEEEeC
Q 015463          182 LDIDDEG-NVYFTDS  195 (406)
Q Consensus       182 l~~d~dG-~ly~t~~  195 (406)
                      .++.+|| ++|++-.
T Consensus       559 ~~FspD~~TlFV~vQ  573 (616)
T COG3211         559 PCFSPDGKTLFVNVQ  573 (616)
T ss_pred             ceeCCCCceEEEEec
Confidence            7899998 6777754

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=94.35  E-value=1  Score=42.06  Aligned_cols=153  Identities=20%  Similarity=0.268  Sum_probs=83.2

Q ss_pred             CcceEEEcCCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEE
Q 015463           70 GPESMAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~  146 (406)
                      ..-+|.++.|..++-+|..||+|..|.-.   -.+.|.                     ..++.| ...+.|++++..+.
T Consensus       265 aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd---------------------rAHtkG-vt~l~FSrD~SqiL  322 (508)
T KOG0275|consen  265 AVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD---------------------RAHTKG-VTCLSFSRDNSQIL  322 (508)
T ss_pred             ceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh---------------------hhhccC-eeEEEEccCcchhh
Confidence            34677788888878889999988766432   111111                     111112 44577887333344


Q ss_pred             EEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCccc
Q 015463          147 IADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKIT  226 (406)
Q Consensus       147 Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~  226 (406)
                      -+.....+..-..++|+.   ...+.|- ..++|...+.+||+-.++.++                              
T Consensus       323 S~sfD~tvRiHGlKSGK~---LKEfrGH-sSyvn~a~ft~dG~~iisaSs------------------------------  368 (508)
T KOG0275|consen  323 SASFDQTVRIHGLKSGKC---LKEFRGH-SSYVNEATFTDDGHHIISASS------------------------------  368 (508)
T ss_pred             cccccceEEEeccccchh---HHHhcCc-cccccceEEcCCCCeEEEecC------------------------------
Confidence            443333333333344432   1122222 357899999999988888765                              


Q ss_pred             CCCCeEEEEeCCCCeEEEecccC---CCcceEEEec-CCCEEEEEeCCCCeEEEEEeeC
Q 015463          227 KDTGRVLKYDPTTKQTTVLLRNL---QFPNGLSLSK-DKSFFVFCEGSVGRLHKYWLIG  281 (406)
Q Consensus       227 ~~~g~l~~~d~~t~~~~~~~~~~---~~~ngi~l~~-d~~~l~v~~t~~~~i~~~~~~g  281 (406)
                        +|.+-.++.+|.+...-...+   ...|.+.+-| +-..++|++. .+.++..++.|
T Consensus       369 --DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr-sntv~imn~qG  424 (508)
T KOG0275|consen  369 --DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR-SNTVYIMNMQG  424 (508)
T ss_pred             --CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcC-CCeEEEEeccc
Confidence              367777887766532211111   1224444444 3334555554 46788888765

>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats

Probab=94.28  E-value=0.058  Score=30.11  Aligned_cols=15  Identities=13%  Similarity=0.656  Sum_probs=11.8

Q ss_pred             ceEECCCCCEEEEEc
Q 015463          299 NVRTNEKGEFWVAIH  313 (406)
Q Consensus       299 ~i~~d~~G~lwv~~~  313 (406)
                      .|..|++|++|+|+.
T Consensus         9 ~i~~D~~G~lWigT~   23 (24)
T PF07494_consen    9 SIYEDSDGNLWIGTY   23 (24)
T ss_dssp             EEEE-TTSCEEEEET
T ss_pred             EEEEcCCcCEEEEeC
Confidence            467899999999985

These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.28  E-value=3.6  Score=38.21  Aligned_cols=144  Identities=17%  Similarity=0.175  Sum_probs=68.5

Q ss_pred             CCeEEEEeCCCCeEEEe---cccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCC------CCcceeeeec-C-----
Q 015463          229 TGRVLKYDPTTKQTTVL---LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE------KAGNLEAFAI-L-----  293 (406)
Q Consensus       229 ~g~l~~~d~~t~~~~~~---~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~------~~~~~~~~~~-l-----  293 (406)
                      .|-|-.||... .+...   ...--.|.-+.+.+||+.+.+++   +.|....-.|.      .-..+-++.+ .     
T Consensus       139 rGViGvYd~r~-~fqrvgE~~t~GiGpHev~lm~DGrtlvvan---GGIethpdfgR~~lNldsMePSlvlld~atG~li  214 (366)
T COG3490         139 RGVIGVYDARE-GFQRVGEFSTHGIGPHEVTLMADGRTLVVAN---GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLI  214 (366)
T ss_pred             CceEEEEeccc-ccceecccccCCcCcceeEEecCCcEEEEeC---CceecccccCccccchhhcCccEEEEeccccchh
Confidence            46677787763 33322   22234577899999999988874   33433311111      0000111111 1     


Q ss_pred             --CCCC--------CceEECCCCCEEEEEccCC--cchhhhhhcChhhhhhhhccCcccee-------eeeEeecCcceE
Q 015463          294 --PGYP--------DNVRTNEKGEFWVAIHCRR--SLYSHLMALYPKIRHFLLKLPISAKT-------HYLIHVGGRLHA  354 (406)
Q Consensus       294 --~g~p--------d~i~~d~~G~lwv~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~  354 (406)
                        .-+|        .-+..+.||++|.+.....  .-.-.++.. -..++-+.-++.++..       ...+.+. ...+
T Consensus       215 ekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~-~~~g~~l~~~~~pee~~~~~anYigsiA~n-~~~g  292 (366)
T COG3490         215 EKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGH-FRKGEPLEFLDLPEEQTAAFANYIGSIAAN-RRDG  292 (366)
T ss_pred             hhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceee-ccCCCcCcccCCCHHHHHHHHhhhhheeec-ccCC
Confidence              1133        2356789999999975321  111111111 1111222222222211       1111111 2344


Q ss_pred             EEEEECCCCCEEEEEECCCCCeee
Q 015463          355 MAVKYSPEGKILQVLEDSKGKVVK  378 (406)
Q Consensus       355 ~v~~~d~~g~~~~~~~~~~g~~~~  378 (406)
                      .|..-+|.|+....+....|.+..
T Consensus       293 lV~lTSP~GN~~vi~da~tG~vv~  316 (366)
T COG3490         293 LVALTSPRGNRAVIWDAATGAVVS  316 (366)
T ss_pred             eEEEecCCCCeEEEEEcCCCcEEe
Confidence            555567889988888777787643

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=94.12  E-value=6.5  Score=38.77  Aligned_cols=74  Identities=16%  Similarity=0.220  Sum_probs=50.8

Q ss_pred             cCcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEE
Q 015463           69 QGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~  146 (406)
                      ..--++++..+|+.|-+|..+|.+..|+.+  ....+..                       ..+....+...+ +|+.+
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~-----------------------HkgPI~slKWnk-~G~yi  291 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQ-----------------------HKGPIFSLKWNK-KGTYI  291 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhc-----------------------cCCceEEEEEcC-CCCEE
Confidence            345788999999999999999999888876  2222211                       123356788887 66644


Q ss_pred             EE-eCCCcEEEEeCCCCeEEE
Q 015463          147 IA-DAYFGLMKVGPEGGLATS  166 (406)
Q Consensus       147 Va-d~~~gl~~~d~~~~~~~~  166 (406)
                      ++ +..+.+..+|..+++...
T Consensus       292 lS~~vD~ttilwd~~~g~~~q  312 (524)
T KOG0273|consen  292 LSGGVDGTTILWDAHTGTVKQ  312 (524)
T ss_pred             EeccCCccEEEEeccCceEEE
Confidence            44 334678889988777654

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=93.91  E-value=3.2  Score=39.86  Aligned_cols=153  Identities=14%  Similarity=0.167  Sum_probs=88.2

Q ss_pred             CcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEe
Q 015463           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad  149 (406)
                      ..-++.+.|+|..|.+|+.|-.+..||.+.-++...        |.+            ..+-.+.++..| +|..+...
T Consensus       117 ~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t--------~Kg------------H~~WVlcvawsP-Dgk~iASG  175 (480)
T KOG0271|consen  117 AVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFT--------CKG------------HKNWVLCVAWSP-DGKKIASG  175 (480)
T ss_pred             cEEEEEecCCCceEEecCCCceEEeeccCCCCccee--------ecC------------CccEEEEEEECC-Ccchhhcc
Confidence            345778889999899999999999998873222211        110            124467888999 66644433


Q ss_pred             C-CCcEEEEeCCCCeEEEcccccCCcccccccceEEc-----CCCCEEEEeCCCchhhhccccccccccccccCCCCCCC
Q 015463          150 A-YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDID-----DEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPI  223 (406)
Q Consensus       150 ~-~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d-----~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  223 (406)
                      . .+.|..+||++|+..  .....|- -..+++|+..     +..+...+.+                            
T Consensus       176 ~~dg~I~lwdpktg~~~--g~~l~gH-~K~It~Lawep~hl~p~~r~las~s----------------------------  224 (480)
T KOG0271|consen  176 SKDGSIRLWDPKTGQQI--GRALRGH-KKWITALAWEPLHLVPPCRRLASSS----------------------------  224 (480)
T ss_pred             ccCCeEEEecCCCCCcc--cccccCc-ccceeEEeecccccCCCccceeccc----------------------------
Confidence            3 356999999987532  1111111 1234555543     3444333322                            


Q ss_pred             cccCCCCeEEEEeCCCCeEEEecccCCCc-ceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          224 KITKDTGRVLKYDPTTKQTTVLLRNLQFP-NGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       224 ~~~~~~g~l~~~d~~t~~~~~~~~~~~~~-ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                          .+|.+..+|...++......+...+ ..+..  -|+.++++.+...+|..+...
T Consensus       225 ----kDg~vrIWd~~~~~~~~~lsgHT~~VTCvrw--GG~gliySgS~DrtIkvw~a~  276 (480)
T KOG0271|consen  225 ----KDGSVRIWDTKLGTCVRTLSGHTASVTCVRW--GGEGLIYSGSQDRTIKVWRAL  276 (480)
T ss_pred             ----CCCCEEEEEccCceEEEEeccCccceEEEEE--cCCceEEecCCCceEEEEEcc
Confidence                2577888888766665555554333 23433  345566666655666666543

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=93.85  E-value=5.2  Score=36.69  Aligned_cols=185  Identities=9%  Similarity=0.015  Sum_probs=104.1

Q ss_pred             EEEcCCCCeeEEEecCCEEEEEeC---CceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeC
Q 015463           74 MAFDPLGRGPYTGVADGRILFWDG---LKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA  150 (406)
Q Consensus        74 i~~d~~g~~ly~g~~~g~I~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~  150 (406)
                      |-+..+|++||+...|.....|-.   +++-++.                       ...|..+.+.+|.+...|..+.+
T Consensus        16 iKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~-----------------------GHtGavW~~Did~~s~~liTGSA   72 (327)
T KOG0643|consen   16 IKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYD-----------------------GHTGAVWCCDIDWDSKHLITGSA   72 (327)
T ss_pred             EEecCCCcEEEEecCCCCceEEEecCCceeeeec-----------------------CCCceEEEEEecCCcceeeeccc
Confidence            446678998888877765544432   1222221                       11345677777774556666666


Q ss_pred             CCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCC
Q 015463          151 YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTG  230 (406)
Q Consensus       151 ~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g  230 (406)
                      .+.+..+|.++|+.......  +   .-+..+.++.+|++........                           ....+
T Consensus        73 D~t~kLWDv~tGk~la~~k~--~---~~Vk~~~F~~~gn~~l~~tD~~---------------------------mg~~~  120 (327)
T KOG0643|consen   73 DQTAKLWDVETGKQLATWKT--N---SPVKRVDFSFGGNLILASTDKQ---------------------------MGYTC  120 (327)
T ss_pred             cceeEEEEcCCCcEEEEeec--C---CeeEEEeeccCCcEEEEEehhh---------------------------cCcce
Confidence            77788889888865432211  1   1245677888888666543210                           11234


Q ss_pred             eEEEEeCCC-------Ce-EEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee-cC-CCCCCce
Q 015463          231 RVLKYDPTT-------KQ-TTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-IL-PGYPDNV  300 (406)
Q Consensus       231 ~l~~~d~~t-------~~-~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~-~l-~g~pd~i  300 (406)
                      -|..||...       .+ +.++...-..++...+++-++++ ++....+.|.+|++...   ..-+-. +. ..-.+++
T Consensus       121 ~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i-i~Ghe~G~is~~da~~g---~~~v~s~~~h~~~Ind~  196 (327)
T KOG0643|consen  121 FVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI-IAGHEDGSISIYDARTG---KELVDSDEEHSSKINDL  196 (327)
T ss_pred             EEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE-EEecCCCcEEEEEcccC---ceeeechhhhccccccc
Confidence            455555542       12 22232223445556677888876 44556789999997632   110000 11 1135678


Q ss_pred             EECCCCCEEEEEccCCc
Q 015463          301 RTNEKGEFWVAIHCRRS  317 (406)
Q Consensus       301 ~~d~~G~lwv~~~~~~~  317 (406)
                      ...++..++|+.....+
T Consensus       197 q~s~d~T~FiT~s~Dtt  213 (327)
T KOG0643|consen  197 QFSRDRTYFITGSKDTT  213 (327)
T ss_pred             cccCCcceEEecccCcc
Confidence            88899999988655433

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=93.83  E-value=3.6  Score=40.38  Aligned_cols=179  Identities=17%  Similarity=0.180  Sum_probs=92.2

Q ss_pred             CcccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCC-Ccc-ccCCCCCcccccccCCcCCcceEEEEeC--C
Q 015463           66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNN-RSE-LCNPKPIATSYLKNEHICGRPLGLRFDK--K  141 (406)
Q Consensus        66 ~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~p~gi~~d~--~  141 (406)
                      ..++.--++.+..||..+++|+.||.|..|..-   ........ ... .|.         ...| .-....|.++.  -
T Consensus       121 aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~---~lv~a~~~~~~~p~~~---------f~~H-tlsITDl~ig~Gg~  187 (476)
T KOG0646|consen  121 AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLT---DLVSADNDHSVKPLHI---------FSDH-TLSITDLQIGSGGT  187 (476)
T ss_pred             hhccceeEEEEeCCCcEEEecCCCccEEEEEEE---eecccccCCCccceee---------eccC-cceeEEEEecCCCc
Confidence            345666888898899989999999999988632   11111110 000 010         0011 11123444443  1


Q ss_pred             CCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCC-CEEEEeCCCchhhhccccccccccccccCCCC
Q 015463          142 TGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRQMQKENIPLQLCSSLNDP  220 (406)
Q Consensus       142 ~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~  220 (406)
                      +.+||-+..++-+..+|...+.+-  .+..-   ...++.+++|+-+ .+|+++....+-...+          ..+.  
T Consensus       188 ~~rl~TaS~D~t~k~wdlS~g~LL--lti~f---p~si~av~lDpae~~~yiGt~~G~I~~~~~----------~~~~--  250 (476)
T KOG0646|consen  188 NARLYTASEDRTIKLWDLSLGVLL--LTITF---PSSIKAVALDPAERVVYIGTEEGKIFQNLL----------FKLS--  250 (476)
T ss_pred             cceEEEecCCceEEEEEeccceee--EEEec---CCcceeEEEcccccEEEecCCcceEEeeeh----------hcCC--
Confidence            356888877778888888877432  11110   1246788999866 6888775422211100          0000  


Q ss_pred             CCCcccCCCCe-EEEEeCCCCeEEEecccCC--CcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          221 SPIKITKDTGR-VLKYDPTTKQTTVLLRNLQ--FPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       221 ~~~~~~~~~g~-l~~~d~~t~~~~~~~~~~~--~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                           +...|- .-.++...-+...+...-.  .-..++++-|+. ++++....+.+-.+++.
T Consensus       251 -----~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~  307 (476)
T KOG0646|consen  251 -----GQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIY  307 (476)
T ss_pred             -----cccccccccccccccceeeeeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecc
Confidence                 000110 1112222223333332222  345789999996 55666656666666654

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=93.81  E-value=1.9  Score=42.02  Aligned_cols=82  Identities=16%  Similarity=0.068  Sum_probs=46.0

Q ss_pred             CeEEEEeCCCCeEEEecccCC-CcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCC--CceEECCCC
Q 015463          230 GRVLKYDPTTKQTTVLLRNLQ-FPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYP--DNVRTNEKG  306 (406)
Q Consensus       230 g~l~~~d~~t~~~~~~~~~~~-~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~p--d~i~~d~~G  306 (406)
                      ..++.+|.++++.+++.++-. ...|..++++.+.+|+... ..+|+++++++.+  ...++.--.++-  .....++++
T Consensus        60 ~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~-~~~l~~vdL~T~e--~~~vy~~p~~~~g~gt~v~n~d~  136 (386)
T PF14583_consen   60 RNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKN-GRSLRRVDLDTLE--ERVVYEVPDDWKGYGTWVANSDC  136 (386)
T ss_dssp             -EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEET-TTEEEEEETTT----EEEEEE--TTEEEEEEEEE-TTS
T ss_pred             cceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEEC-CCeEEEEECCcCc--EEEEEECCcccccccceeeCCCc
Confidence            469999999999999876542 2347788898888876654 4689999987532  223333111111  123357789


Q ss_pred             CEEEEEcc
Q 015463          307 EFWVAIHC  314 (406)
Q Consensus       307 ~lwv~~~~  314 (406)
                      +..++...
T Consensus       137 t~~~g~e~  144 (386)
T PF14583_consen  137 TKLVGIEI  144 (386)
T ss_dssp             SEEEEEEE
T ss_pred             cEEEEEEE
Confidence            98888643

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=93.69  E-value=5.4  Score=39.40  Aligned_cols=177  Identities=12%  Similarity=0.097  Sum_probs=74.4

Q ss_pred             CCcceEEEEeCCCCcEEEEeCC-------CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhh
Q 015463          130 CGRPLGLRFDKKTGDLYIADAY-------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRR  202 (406)
Q Consensus       130 ~~~p~gi~~d~~~g~L~Vad~~-------~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~  202 (406)
                      ..+|+.+.--+ +|+++|...+       .|++.+|.+|-++.-.-.. +.....+-.++-..+.-++-+|+.   |+..
T Consensus       129 ~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~-~~~~~~~gYDfw~qpr~nvMiSSe---Wg~P  203 (461)
T PF05694_consen  129 LSRPHTVHCLP-DGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEK-DRGPQPFGYDFWYQPRHNVMISSE---WGAP  203 (461)
T ss_dssp             EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE-TTT--EEEE--S-B-TT------EEEETTTTEEEE-B------H
T ss_pred             CCCCceeeecC-CccEEEEeccCCCCCCCCcEEEEcCccccccceecc-CCCCCCCCCCeEEcCCCCEEEEec---cCCh
Confidence            46688777777 7888886432       4799999886544322111 112234667788888888888863   2221


Q ss_pred             ccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccC---CCcceEEEe--cCCCEEEEEeCCCCeEEEE
Q 015463          203 QMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNL---QFPNGLSLS--KDKSFFVFCEGSVGRLHKY  277 (406)
Q Consensus       203 ~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~---~~~ngi~l~--~d~~~l~v~~t~~~~i~~~  277 (406)
                      .....|-...++..         +.-..+|..+|..+++..+..+--   ..|--|.+.  |+...=|+.-.-...||++
T Consensus       204 ~~~~~Gf~~~d~~~---------~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~  274 (461)
T PF05694_consen  204 SMFEKGFNPEDLEA---------GKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRF  274 (461)
T ss_dssp             HHHTT---TTTHHH---------H-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEE
T ss_pred             hhcccCCChhHhhc---------ccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEE
Confidence            11111211222222         333456999999988776543221   112223232  3344444444445678887


Q ss_pred             EeeCCCCcceeee--------------------ecCCCCCCceEECCCCC-EEEEEccCCcchh
Q 015463          278 WLIGEKAGNLEAF--------------------AILPGYPDNVRTNEKGE-FWVAIHCRRSLYS  320 (406)
Q Consensus       278 ~~~g~~~~~~~~~--------------------~~l~g~pd~i~~d~~G~-lwv~~~~~~~~~~  320 (406)
                      ..+....=..+.+                    ...|+++..|.++-|.+ |||++........
T Consensus       275 ~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~Gdvrq  338 (461)
T PF05694_consen  275 YKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQ  338 (461)
T ss_dssp             EE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEE
T ss_pred             EEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEE
Confidence            6531100001111                    11267788888887777 8999876544433

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=93.62  E-value=8.5  Score=38.41  Aligned_cols=108  Identities=19%  Similarity=0.174  Sum_probs=62.8

Q ss_pred             EEeCCCCcEEEEeCCC---cEEEEeCCCCeEEEcccccCCcccccccceEEcCCC-CEEEEeCCCchhhhcccccccccc
Q 015463          137 RFDKKTGDLYIADAYF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRQMQKENIPLQ  212 (406)
Q Consensus       137 ~~d~~~g~L~Vad~~~---gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~  212 (406)
                      +|.++...|.++....   .||.+|..++....+... .+..-    .=...+|| .|+|+....               
T Consensus       244 ~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~-~gi~~----~Ps~spdG~~ivf~Sdr~---------------  303 (425)
T COG0823         244 AFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNG-FGINT----SPSWSPDGSKIVFTSDRG---------------  303 (425)
T ss_pred             cCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccC-Ccccc----CccCCCCCCEEEEEeCCC---------------
Confidence            5566333444444433   489999988876554332 11100    12456788 566664321               


Q ss_pred             ccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCe--EEEEEe
Q 015463          213 LCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGR--LHKYWL  279 (406)
Q Consensus       213 ~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~--i~~~~~  279 (406)
                                   +  .-.|+++|+++++.+.+.........-.++|||+.+.+.....+.  |..+++
T Consensus       304 -------------G--~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~  357 (425)
T COG0823         304 -------------G--RPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDL  357 (425)
T ss_pred             -------------C--CcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEecc
Confidence                         1  226999999988887776554444455688999988777633333  444443

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=93.60  E-value=2.3  Score=40.90  Aligned_cols=119  Identities=17%  Similarity=0.253  Sum_probs=64.9

Q ss_pred             cceEEEEeCCCCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccccc
Q 015463          132 RPLGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIP  210 (406)
Q Consensus       132 ~p~gi~~d~~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~  210 (406)
                      ..+.+.|.. +|.+++++.. +.|..+|+.++++..-.....|.   .+....+-.+|.+ +|+..++...+++.     
T Consensus       175 ~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~---k~~Raifl~~g~i-~tTGfsr~seRq~a-----  244 (472)
T KOG0303|consen  175 MVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA---KPARAIFLASGKI-FTTGFSRMSERQIA-----  244 (472)
T ss_pred             eEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeecccccCC---CcceeEEeccCce-eeecccccccccee-----
Confidence            357888988 8999888876 67999999988754332222232   2444555667874 44432333222210     


Q ss_pred             ccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          211 LQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       211 ~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                      +.      ++.++.  . .+.+.-+|..+|-+-.           -+++|.+.+|++.-+.+.|.-|.+.
T Consensus       245 Lw------dp~nl~--e-P~~~~elDtSnGvl~P-----------FyD~dt~ivYl~GKGD~~IRYyEit  294 (472)
T KOG0303|consen  245 LW------DPNNLE--E-PIALQELDTSNGVLLP-----------FYDPDTSIVYLCGKGDSSIRYFEIT  294 (472)
T ss_pred             cc------Cccccc--C-cceeEEeccCCceEEe-----------eecCCCCEEEEEecCCcceEEEEec
Confidence            00      000000  0 1223334433332211           1457888899998877777666655

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=93.57  E-value=2.5  Score=43.76  Aligned_cols=152  Identities=16%  Similarity=0.095  Sum_probs=89.1

Q ss_pred             EEEcCCCCeeEEEecCCEEEEEeCCceeE-EEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCCC
Q 015463           74 MAFDPLGRGPYTGVADGRILFWDGLKWTD-FAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYF  152 (406)
Q Consensus        74 i~~d~~g~~ly~g~~~g~I~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~~  152 (406)
                      ++++++|..||+...+ +|..++...... +....    ..|               ......+++++++..|+.+....
T Consensus        25 ~~~s~nG~~L~t~~~d-~Vi~idv~t~~~~l~s~~----~ed---------------~d~ita~~l~~d~~~L~~a~rs~   84 (775)
T KOG0319|consen   25 VAWSSNGQHLYTACGD-RVIIIDVATGSIALPSGS----NED---------------EDEITALALTPDEEVLVTASRSQ   84 (775)
T ss_pred             eeECCCCCEEEEecCc-eEEEEEccCCceecccCC----ccc---------------hhhhheeeecCCccEEEEeeccc
Confidence            8999999988887654 577776551111 11111    011               12234677888444455554434


Q ss_pred             cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeE
Q 015463          153 GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRV  232 (406)
Q Consensus       153 gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l  232 (406)
                      -+-.++.+++++...-......|   +.-+++++.|.+..+-                                ..+|++
T Consensus        85 llrv~~L~tgk~irswKa~He~P---vi~ma~~~~g~LlAtg--------------------------------gaD~~v  129 (775)
T KOG0319|consen   85 LLRVWSLPTGKLIRSWKAIHEAP---VITMAFDPTGTLLATG--------------------------------GADGRV  129 (775)
T ss_pred             eEEEEEcccchHhHhHhhccCCC---eEEEEEcCCCceEEec--------------------------------cccceE
Confidence            45567777775432211111112   3457888888665543                                235788


Q ss_pred             EEEeCCCCeEEEecccCCCc-ceEEEecCCCE-EEEEeCCCCeEEEEEee
Q 015463          233 LKYDPTTKQTTVLLRNLQFP-NGLSLSKDKSF-FVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       233 ~~~d~~t~~~~~~~~~~~~~-ngi~l~~d~~~-l~v~~t~~~~i~~~~~~  280 (406)
                      ..+|-+.+.......++..+ ..+.+.|+... ++++....+.+..|++.
T Consensus       130 ~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~  179 (775)
T KOG0319|consen  130 KVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLN  179 (775)
T ss_pred             EEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcc
Confidence            88998888887777775554 34566666543 44555556788888876

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.51  E-value=1.6  Score=42.10  Aligned_cols=155  Identities=16%  Similarity=0.140  Sum_probs=83.9

Q ss_pred             ceEEEcCCCCeeEEEecCCEEEEEe-CCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeC
Q 015463           72 ESMAFDPLGRGPYTGVADGRILFWD-GLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA  150 (406)
Q Consensus        72 e~i~~d~~g~~ly~g~~~g~I~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~  150 (406)
                      -.+++..+|..+=++..||.+..|+ +. ..++...                   .+ ..+....|.|.+ +|.+.+.-.
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps-~~t~l~e-------------------~~-~~~eV~DL~FS~-dgk~lasig  205 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPS-MLTILEE-------------------IA-HHAEVKDLDFSP-DGKFLASIG  205 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCc-chhhhhh-------------------Hh-hcCccccceeCC-CCcEEEEec
Confidence            4667888888788888899888888 43 1111110                   01 124466789998 887776665


Q ss_pred             CCcEEEEeCCCCeEEEcccccCC-cccccccceEEcCCC-CEEEEeCCCchhhhccccccccccccccCCCCCCCcccCC
Q 015463          151 YFGLMKVGPEGGLATSLATEAEG-VPLRFTNDLDIDDEG-NVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKD  228 (406)
Q Consensus       151 ~~gl~~~d~~~~~~~~l~~~~~~-~~~~~~~~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  228 (406)
                      ......++.+++......+.... ..+..++ .-.|+++ .+++.+.-                              .+
T Consensus       206 ~d~~~VW~~~~g~~~a~~t~~~k~~~~~~cR-F~~d~~~~~l~laa~~------------------------------~~  254 (398)
T KOG0771|consen  206 ADSARVWSVNTGAALARKTPFSKDEMFSSCR-FSVDNAQETLRLAASQ------------------------------FP  254 (398)
T ss_pred             CCceEEEEeccCchhhhcCCcccchhhhhce-ecccCCCceEEEEEec------------------------------CC
Confidence            56777788777732111111111 1111111 2233322 66766532                              12


Q ss_pred             CCeEEEEeCCC--C----eEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          229 TGRVLKYDPTT--K----QTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       229 ~g~l~~~d~~t--~----~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                      .+++..++...  +    +.+...........++++.||+++-+. |..+.|..|...
T Consensus       255 ~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG-T~dGsVai~~~~  311 (398)
T KOG0771|consen  255 GGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG-TMDGSVAIYDAK  311 (398)
T ss_pred             CCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe-ccCCcEEEEEec
Confidence            23343333221  1    222223333445678899999987665 557788888754

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=93.42  E-value=7.5  Score=37.13  Aligned_cols=109  Identities=22%  Similarity=0.138  Sum_probs=67.1

Q ss_pred             eeccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeC
Q 015463           62 IKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK  140 (406)
Q Consensus        62 ~~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~  140 (406)
                      ++..+.+-...++++||-+..+-+|+.|+.|-.||.. +.-.....+                    + ....-|+++++
T Consensus       145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltG--------------------h-i~~vr~vavS~  203 (460)
T KOG0285|consen  145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTG--------------------H-IETVRGVAVSK  203 (460)
T ss_pred             hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecc--------------------h-hheeeeeeecc
Confidence            3445677788999999977634457888888888876 322222111                    0 11234678876


Q ss_pred             CCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeC
Q 015463          141 KTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDS  195 (406)
Q Consensus       141 ~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~  195 (406)
                      ..-.|+-+..++.+-.+|.+..++..-   ..| -+..+.+|+..+.-.+.++.+
T Consensus       204 rHpYlFs~gedk~VKCwDLe~nkvIR~---YhG-HlS~V~~L~lhPTldvl~t~g  254 (460)
T KOG0285|consen  204 RHPYLFSAGEDKQVKCWDLEYNKVIRH---YHG-HLSGVYCLDLHPTLDVLVTGG  254 (460)
T ss_pred             cCceEEEecCCCeeEEEechhhhhHHH---hcc-ccceeEEEeccccceeEEecC
Confidence            444566665566788899886654221   112 245677788887766777753

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=93.24  E-value=9.2  Score=37.61  Aligned_cols=69  Identities=23%  Similarity=0.224  Sum_probs=47.2

Q ss_pred             ceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCC
Q 015463           72 ESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAY  151 (406)
Q Consensus        72 e~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~  151 (406)
                      -++++.+||..+-+|..+..|..|+.+...++...                    ....+...+++|-....+||.+...
T Consensus       206 l~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~--------------------~ghr~~V~~L~fr~gt~~lys~s~D  265 (479)
T KOG0299|consen  206 LTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVF--------------------KGHRGAVSSLAFRKGTSELYSASAD  265 (479)
T ss_pred             EEEEEcCCCcEEEecCCCceEEEecCcccchhhcc--------------------cccccceeeeeeecCccceeeeecC
Confidence            35688899997777777777778887632222111                    1124556788887656789999988


Q ss_pred             CcEEEEeCC
Q 015463          152 FGLMKVGPE  160 (406)
Q Consensus       152 ~gl~~~d~~  160 (406)
                      +++-.++.+
T Consensus       266 rsvkvw~~~  274 (479)
T KOG0299|consen  266 RSVKVWSID  274 (479)
T ss_pred             CceEEEehh
Confidence            888777765

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=93.11  E-value=7.8  Score=36.47  Aligned_cols=29  Identities=28%  Similarity=0.319  Sum_probs=24.1

Q ss_pred             CcceEEEcCCCCeeEEEecCCEEEEEeCC
Q 015463           70 GPESMAFDPLGRGPYTGVADGRILFWDGL   98 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~   98 (406)
                      ...++++.+||..|-+.+.|+.|..|+.+
T Consensus        88 ~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~  116 (420)
T KOG2096|consen   88 EVTDVAFSSDGKKLATISGDRSIRLWDVR  116 (420)
T ss_pred             ceeeeEEcCCCceeEEEeCCceEEEEecc
Confidence            45789999999977788889988888765

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.08  E-value=4.7  Score=39.13  Aligned_cols=83  Identities=14%  Similarity=0.143  Sum_probs=54.9

Q ss_pred             CeEEEEeCCCCeEEEecccCCCcc-eEEEecCCCEEEEEeCC----CCeEEEEEeeCCCCcceeeeecCCCCCC-ceEEC
Q 015463          230 GRVLKYDPTTKQTTVLLRNLQFPN-GLSLSKDKSFFVFCEGS----VGRLHKYWLIGEKAGNLEAFAILPGYPD-NVRTN  303 (406)
Q Consensus       230 g~l~~~d~~t~~~~~~~~~~~~~n-gi~l~~d~~~l~v~~t~----~~~i~~~~~~g~~~~~~~~~~~l~g~pd-~i~~d  303 (406)
                      ..|+.++.+++..+.+..+-...+ -+.++++++.+|+..+.    ...|++++++  ..+..+.+....+ .. .+.++
T Consensus       260 ~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~--~~~~~~~LT~~~~-~~~~~~~S  336 (353)
T PF00930_consen  260 RHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD--SGGEPKCLTCEDG-DHYSASFS  336 (353)
T ss_dssp             EEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT--ETTEEEESSTTSS-TTEEEEE-
T ss_pred             cEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC--CCCCeEeccCCCC-CceEEEEC
Confidence            579999999888777666554443 46688899999998775    3478888876  1233333332222 23 67889


Q ss_pred             CCCCEEEEEccC
Q 015463          304 EKGEFWVAIHCR  315 (406)
Q Consensus       304 ~~G~lwv~~~~~  315 (406)
                      ++|+++|-...+
T Consensus       337 pdg~y~v~~~s~  348 (353)
T PF00930_consen  337 PDGKYYVDTYSG  348 (353)
T ss_dssp             TTSSEEEEEEES
T ss_pred             CCCCEEEEEEcC
Confidence            999988877654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=92.95  E-value=10  Score=37.45  Aligned_cols=83  Identities=14%  Similarity=0.016  Sum_probs=39.3

Q ss_pred             CeEEEEeCCCCeE-EEec-ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCC----C-CCCceEE
Q 015463          230 GRVLKYDPTTKQT-TVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILP----G-YPDNVRT  302 (406)
Q Consensus       230 g~l~~~d~~t~~~-~~~~-~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~----g-~pd~i~~  302 (406)
                      |.+++-+...+.. +.+. .......++++.+|+..+++.+  .+.+++-...|. ......|...+    + ...++..
T Consensus       259 G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~--~G~l~~S~d~G~-~~~~~~f~~~~~~~~~~~l~~v~~  335 (398)
T PLN00033        259 GNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTR--GGGLYVSKGTGL-TEEDFDFEEADIKSRGFGILDVGY  335 (398)
T ss_pred             ccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeC--CceEEEecCCCC-cccccceeecccCCCCcceEEEEE
Confidence            5566544433332 3322 2222335677777877554443  356655443321 11111222211    1 1234566


Q ss_pred             CCCCCEEEEEccC
Q 015463          303 NEKGEFWVAIHCR  315 (406)
Q Consensus       303 d~~G~lwv~~~~~  315 (406)
                      .+++.+|++...+
T Consensus       336 ~~d~~~~a~G~~G  348 (398)
T PLN00033        336 RSKKEAWAAGGSG  348 (398)
T ss_pred             cCCCcEEEEECCC
Confidence            6788899988665

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=92.87  E-value=9.3  Score=37.79  Aligned_cols=63  Identities=11%  Similarity=0.045  Sum_probs=36.7

Q ss_pred             cceEEEEeCCCCcEEEEeCCCcEEEEeCCCCeEE--EcccccCCcccccccceEEcCCCCEEEEeC
Q 015463          132 RPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLAT--SLATEAEGVPLRFTNDLDIDDEGNVYFTDS  195 (406)
Q Consensus       132 ~p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~--~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~  195 (406)
                      +..++.+.. +|.+|++...+++++-+-.+...+  .+...........+.++...+++++|++-.
T Consensus       282 ~l~~v~~~~-dg~l~l~g~~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~  346 (398)
T PLN00033        282 RIQNMGWRA-DGGLWLLTRGGGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGG  346 (398)
T ss_pred             ceeeeeEcC-CCCEEEEeCCceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEEC
Confidence            345777877 899999987767666543332110  111110011112466788888899998864

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.85  E-value=16  Score=39.25  Aligned_cols=70  Identities=19%  Similarity=0.157  Sum_probs=50.0

Q ss_pred             CcccCcceEEEcCCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCC
Q 015463           66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT  142 (406)
Q Consensus        66 ~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~  142 (406)
                      |......|+.+++..+++...+.|+.|..||..   .++.|...                       ..|=+-++..| .
T Consensus       248 gH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrre-----------------------ndRFW~laahP-~  303 (1202)
T KOG0292|consen  248 GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRE-----------------------NDRFWILAAHP-E  303 (1202)
T ss_pred             cccCCcceEEecCccceeEecCCCccEEEEecccccceeeeecc-----------------------CCeEEEEEecC-C
Confidence            455667899999888867777889999999876   33333221                       24556678888 7


Q ss_pred             CcEEEEeCCCcEEEEeC
Q 015463          143 GDLYIADAYFGLMKVGP  159 (406)
Q Consensus       143 g~L~Vad~~~gl~~~d~  159 (406)
                      .|||.|.++.|+..|-.
T Consensus       304 lNLfAAgHDsGm~VFkl  320 (1202)
T KOG0292|consen  304 LNLFAAGHDSGMIVFKL  320 (1202)
T ss_pred             cceeeeecCCceEEEEE
Confidence            89998888778665543

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=92.80  E-value=5.3  Score=38.32  Aligned_cols=177  Identities=14%  Similarity=0.123  Sum_probs=105.0

Q ss_pred             CcccCcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcc--ccCCCCCcccc-cccCCcCCcceEEEEeC
Q 015463           66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSE--LCNPKPIATSY-LKNEHICGRPLGLRFDK  140 (406)
Q Consensus        66 ~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~p~gi~~d~  140 (406)
                      |.-..-+++.++++|..+..|+.|..|-.|+..  ...++-.....+..  .-.....++.. ...+..-.....+.++.
T Consensus       191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d  270 (423)
T KOG0313|consen  191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD  270 (423)
T ss_pred             ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence            555567999999999988889999989888722  11111110000000  00000000000 00011111133567776


Q ss_pred             CCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCC
Q 015463          141 KTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDP  220 (406)
Q Consensus       141 ~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~  220 (406)
                       .+.+|-+..++.|..+|.+++....-.  ..+   ...+++...+.-++.++.++                        
T Consensus       271 -~~v~yS~SwDHTIk~WDletg~~~~~~--~~~---ksl~~i~~~~~~~Ll~~gss------------------------  320 (423)
T KOG0313|consen  271 -ATVIYSVSWDHTIKVWDLETGGLKSTL--TTN---KSLNCISYSPLSKLLASGSS------------------------  320 (423)
T ss_pred             -CCceEeecccceEEEEEeecccceeee--ecC---cceeEeecccccceeeecCC------------------------
Confidence             788998888899999999887543211  111   23567777777777777654                        


Q ss_pred             CCCcccCCCCeEEEEeCCCCeEEEecccC----CCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          221 SPIKITKDTGRVLKYDPTTKQTTVLLRNL----QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       221 ~~~~~~~~~g~l~~~d~~t~~~~~~~~~~----~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                              +-.+..|||.++.-......+    ....++-.+|-+.+.+++....+.+..++..
T Consensus       321 --------dr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvR  376 (423)
T KOG0313|consen  321 --------DRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVR  376 (423)
T ss_pred             --------CCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEec
Confidence                    234777899887654433222    2345778889888999998888888888765

>PRK13616 lipoprotein LpqB; Provisional

Probab=92.80  E-value=14  Score=38.58  Aligned_cols=82  Identities=15%  Similarity=0.060  Sum_probs=45.1

Q ss_pred             CCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceee-----ee-cCCCCCCceEE
Q 015463          229 TGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEA-----FA-ILPGYPDNVRT  302 (406)
Q Consensus       229 ~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~-----~~-~l~g~pd~i~~  302 (406)
                      .+.++..+.++++...  ..-.....+.+|+||+.+.+.-.  ++|+.--+.....|..++     +. .+...+..+..
T Consensus       429 ~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~--g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W  504 (591)
T PRK13616        429 TGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIG--GKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDW  504 (591)
T ss_pred             CceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEEC--CEEEEEEEEeCCCCceeecccEEeecccCCccccceE
Confidence            4567766666555443  11123567899999999887653  577774333222222222     11 22222345666


Q ss_pred             CCCCCEEEEEcc
Q 015463          303 NEKGEFWVAIHC  314 (406)
Q Consensus       303 d~~G~lwv~~~~  314 (406)
                      -.++.|.|+...
T Consensus       505 ~~~~~L~V~~~~  516 (591)
T PRK13616        505 RTGDSLVVGRSD  516 (591)
T ss_pred             ecCCEEEEEecC
Confidence            667777777543

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=92.79  E-value=14  Score=38.67  Aligned_cols=191  Identities=15%  Similarity=0.132  Sum_probs=98.1

Q ss_pred             CcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEe
Q 015463           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad  149 (406)
                      -..++++..+.. +..+..++.|..|+.+..+-+...                      .|+..++-.|-|.+..+.+|.
T Consensus       375 dVRsl~vS~d~~-~~~Sga~~SikiWn~~t~kciRTi----------------------~~~y~l~~~Fvpgd~~Iv~G~  431 (888)
T KOG0306|consen  375 DVRSLCVSSDSI-LLASGAGESIKIWNRDTLKCIRTI----------------------TCGYILASKFVPGDRYIVLGT  431 (888)
T ss_pred             heeEEEeecCce-eeeecCCCcEEEEEccCcceeEEe----------------------ccccEEEEEecCCCceEEEec
Confidence            346777876665 444445667888887633322211                      155567777887333344444


Q ss_pred             CCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCC
Q 015463          150 AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDT  229 (406)
Q Consensus       150 ~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~  229 (406)
                      -.+.|..||......-......+|    .+.+++..+||.=++|.+..+ ..+-|        +                
T Consensus       432 k~Gel~vfdlaS~~l~Eti~AHdg----aIWsi~~~pD~~g~vT~saDk-tVkfW--------d----------------  482 (888)
T KOG0306|consen  432 KNGELQVFDLASASLVETIRAHDG----AIWSISLSPDNKGFVTGSADK-TVKFW--------D----------------  482 (888)
T ss_pred             cCCceEEEEeehhhhhhhhhcccc----ceeeeeecCCCCceEEecCCc-EEEEE--------e----------------
Confidence            334477777654422111111112    355677777776666654210 01111        0                


Q ss_pred             CeEEEEe-CCCC-eEEEec--ccCC---CcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCC--C-Cc
Q 015463          230 GRVLKYD-PTTK-QTTVLL--RNLQ---FPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGY--P-DN  299 (406)
Q Consensus       230 g~l~~~d-~~t~-~~~~~~--~~~~---~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~--p-d~  299 (406)
                       -.+..+ |.|. ++-.+.  ..+.   ..-.+.+|||+++|.++-- .+.+..|.++.     ...|..+.|.  | -.
T Consensus       483 -f~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLL-dnTVkVyflDt-----lKFflsLYGHkLPV~s  555 (888)
T KOG0306|consen  483 -FKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLL-DNTVKVYFLDT-----LKFFLSLYGHKLPVLS  555 (888)
T ss_pred             -EEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEec-cCeEEEEEecc-----eeeeeeecccccceeE
Confidence             011111 1111 100010  1111   2346789999998877754 57888888763     3445555443  3 23


Q ss_pred             eEECCCCCEEEEEccCCcch
Q 015463          300 VRTNEKGEFWVAIHCRRSLY  319 (406)
Q Consensus       300 i~~d~~G~lwv~~~~~~~~~  319 (406)
                      +.+++|+.+.|+....+++-
T Consensus       556 mDIS~DSklivTgSADKnVK  575 (888)
T KOG0306|consen  556 MDISPDSKLIVTGSADKNVK  575 (888)
T ss_pred             EeccCCcCeEEeccCCCceE
Confidence            44567778888776665543

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=92.48  E-value=9.1  Score=35.61  Aligned_cols=162  Identities=14%  Similarity=0.135  Sum_probs=89.7

Q ss_pred             cceeccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEE
Q 015463           60 SEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGL  136 (406)
Q Consensus        60 ~~~~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi  136 (406)
                      .++.+.|.+.-.-++.+.+|.+.+..++.||++..||.-   +..-+..                       .+.-....
T Consensus        47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl-----------------------~s~WVMtC  103 (343)
T KOG0286|consen   47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL-----------------------PSSWVMTC  103 (343)
T ss_pred             eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec-----------------------CceeEEEE
Confidence            346777888788899999999989999999999999975   2211111                       02224556


Q ss_pred             EEeCCCCcEEEEeCC-CcEEEEeCCCCeEE---EcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccccccc
Q 015463          137 RFDKKTGDLYIADAY-FGLMKVGPEGGLAT---SLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQ  212 (406)
Q Consensus       137 ~~d~~~g~L~Vad~~-~gl~~~d~~~~~~~---~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~  212 (406)
                      ++.| .|++..+..- +-.-.|+..+...+   .......+- -.++.+..+-+|+.|.-+.                  
T Consensus       104 A~sP-Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gH-tgylScC~f~dD~~ilT~S------------------  163 (343)
T KOG0286|consen  104 AYSP-SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGH-TGYLSCCRFLDDNHILTGS------------------  163 (343)
T ss_pred             EECC-CCCeEEecCcCceeEEEecccccccccceeeeeecCc-cceeEEEEEcCCCceEecC------------------
Confidence            7888 7776554322 22333443322111   111111111 1234444444465554332                  


Q ss_pred             ccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccC-CCcceEEEec-CCCEEEEEeCCCCeEEEEEee
Q 015463          213 LCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNL-QFPNGLSLSK-DKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       213 ~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~-~~~ngi~l~~-d~~~l~v~~t~~~~i~~~~~~  280 (406)
                                     ++..-..+|.++++......+. ...-+++++| +++ .|++......-+.+++.
T Consensus       164 ---------------GD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n-tFvSg~cD~~aklWD~R  217 (343)
T KOG0286|consen  164 ---------------GDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN-TFVSGGCDKSAKLWDVR  217 (343)
T ss_pred             ---------------CCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC-eEEecccccceeeeecc
Confidence                           2345667788888765544332 2334677888 665 56765544444455543

>PRK02888 nitrous-oxide reductase; Validated

Probab=92.46  E-value=15  Score=38.17  Aligned_cols=54  Identities=20%  Similarity=0.265  Sum_probs=34.2

Q ss_pred             EecCCCEEEEEeCCCCeEEEEEeeCC-CCc-ceeeeecCCCCCCceEECCCCCEEEEEc
Q 015463          257 LSKDKSFFVFCEGSVGRLHKYWLIGE-KAG-NLEAFAILPGYPDNVRTNEKGEFWVAIH  313 (406)
Q Consensus       257 l~~d~~~l~v~~t~~~~i~~~~~~g~-~~~-~~~~~~~l~g~pd~i~~d~~G~lwv~~~  313 (406)
                      +.+||++.++.   .++|..++.... +.+ ...-++..+-.|-|+.+++||...+.++
T Consensus       284 ~vkdGK~~~V~---gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVan  339 (635)
T PRK02888        284 AVKAGKFKTIG---GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANG  339 (635)
T ss_pred             hhhCCCEEEEC---CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeC
Confidence            44688888773   468888885420 112 2222334566799999999999555543

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=92.37  E-value=2.4  Score=45.37  Aligned_cols=102  Identities=13%  Similarity=0.154  Sum_probs=67.0

Q ss_pred             CcEEEEeCCCcEEEEeCCCCeEEEcccc-cCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCC
Q 015463          143 GDLYIADAYFGLMKVGPEGGLATSLATE-AEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPS  221 (406)
Q Consensus       143 g~L~Vad~~~gl~~~d~~~~~~~~l~~~-~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~  221 (406)
                      ..-++|-..++|+++||.-..-+.+... ..-...+...+++.+.+|.|-+++.                          
T Consensus       543 e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~--------------------------  596 (794)
T PF08553_consen  543 EQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSN--------------------------  596 (794)
T ss_pred             CceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeC--------------------------
Confidence            3578888889999999974321111111 0112233466788899999988874                          


Q ss_pred             CCcccCCCCeEEEEeCCCCeEEEecccCCCc-ceEEEecCCCEEEEEeCCCCeEEEEEe
Q 015463          222 PIKITKDTGRVLKYDPTTKQTTVLLRNLQFP-NGLSLSKDKSFFVFCEGSVGRLHKYWL  279 (406)
Q Consensus       222 ~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~-ngi~l~~d~~~l~v~~t~~~~i~~~~~  279 (406)
                             .|.|-.||.-+.+.+....++..| -||.++.||++++.+  ....|..++.
T Consensus       597 -------~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaT--c~tyLlLi~t  646 (794)
T PF08553_consen  597 -------KGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILAT--CKTYLLLIDT  646 (794)
T ss_pred             -------CCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEe--ecceEEEEEE
Confidence                   377777887655556666666666 589999999977553  3556777664

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=92.32  E-value=5.2  Score=41.88  Aligned_cols=153  Identities=18%  Similarity=0.150  Sum_probs=85.3

Q ss_pred             CcceEEEcC-CCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcE-
Q 015463           70 GPESMAFDP-LGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL-  145 (406)
Q Consensus        70 gpe~i~~d~-~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L-  145 (406)
                      .--+|++.| |.+.+..|+-||++..|.-.  ++..+....                       .-...+++.| +|.. 
T Consensus       411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-----------------------~lITAvcy~P-dGk~a  466 (712)
T KOG0283|consen  411 FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-----------------------DLITAVCYSP-DGKGA  466 (712)
T ss_pred             eeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-----------------------hhheeEEecc-CCceE
Confidence            346778886 44545568999999999754  444443211                       2245678888 5654 


Q ss_pred             EEEeCCCcE-EEEeCCCCeEEEc----ccccCCcccccccceEEcCCC--CEEEEeCCCchhhhccccccccccccccCC
Q 015463          146 YIADAYFGL-MKVGPEGGLATSL----ATEAEGVPLRFTNDLDIDDEG--NVYFTDSSTNYQRRQMQKENIPLQLCSSLN  218 (406)
Q Consensus       146 ~Vad~~~gl-~~~d~~~~~~~~l----~~~~~~~~~~~~~~l~~d~dG--~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~  218 (406)
                      .||+ .+|. ..|+..+-++..-    .......+...+.++-+.+-.  .+.+|+.                       
T Consensus       467 vIGt-~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSn-----------------------  522 (712)
T KOG0283|consen  467 VIGT-FNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSN-----------------------  522 (712)
T ss_pred             EEEE-eccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecC-----------------------
Confidence            5555 4554 4555554433211    000001111234555544321  4777653                       


Q ss_pred             CCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcc---eEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463          219 DPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPN---GLSLSKDKSFFVFCEGSVGRLHKYWLIG  281 (406)
Q Consensus       219 ~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~n---gi~l~~d~~~l~v~~t~~~~i~~~~~~g  281 (406)
                                +.+|-.||..+..+.....+....+   --.++.||+.++.+. ....|+.+..+.
T Consensus       523 ----------DSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s-eDs~VYiW~~~~  577 (712)
T KOG0283|consen  523 ----------DSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS-EDSWVYIWKNDS  577 (712)
T ss_pred             ----------CCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEee-cCceEEEEeCCC
Confidence                      3578888886555544444544433   345788999876554 567777777643

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.31  E-value=2.5  Score=40.58  Aligned_cols=92  Identities=12%  Similarity=-0.003  Sum_probs=58.6

Q ss_pred             CCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCCCcEEEEe
Q 015463           80 GRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVG  158 (406)
Q Consensus        80 g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~~gl~~~d  158 (406)
                      ...+.+.|.-+.+..||.. +.++++...-                 .|   .....+...+....+|+++....|..||
T Consensus       216 ~~~fat~T~~hqvR~YDt~~qRRPV~~fd~-----------------~E---~~is~~~l~p~gn~Iy~gn~~g~l~~FD  275 (412)
T KOG3881|consen  216 NYKFATITRYHQVRLYDTRHQRRPVAQFDF-----------------LE---NPISSTGLTPSGNFIYTGNTKGQLAKFD  275 (412)
T ss_pred             CceEEEEecceeEEEecCcccCcceeEecc-----------------cc---CcceeeeecCCCcEEEEecccchhheec
Confidence            4457888999999999987 5556654321                 11   1123455666345588998888899999


Q ss_pred             CCCCeEEEcccccCCcccccccceEEcCCCCEEEEe
Q 015463          159 PEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTD  194 (406)
Q Consensus       159 ~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~  194 (406)
                      ..+++..-.  ...|. -..+.+|..++.+.+..+.
T Consensus       276 ~r~~kl~g~--~~kg~-tGsirsih~hp~~~~las~  308 (412)
T KOG3881|consen  276 LRGGKLLGC--GLKGI-TGSIRSIHCHPTHPVLASC  308 (412)
T ss_pred             ccCceeecc--ccCCc-cCCcceEEEcCCCceEEee
Confidence            987754321  11221 2347788888877776654

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=92.28  E-value=5.6  Score=37.35  Aligned_cols=76  Identities=22%  Similarity=0.317  Sum_probs=54.1

Q ss_pred             CcceEEEEeCCCCcEEEEeCC-------------Cc-EEEEeCCCCeEEEcccccCCcccccccceEEcC------CCCE
Q 015463          131 GRPLGLRFDKKTGDLYIADAY-------------FG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD------EGNV  190 (406)
Q Consensus       131 ~~p~gi~~d~~~g~L~Vad~~-------------~g-l~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~------dG~l  190 (406)
                      --|.+|.--  +++|||.-+.             .| |-.+|+++..++++.+   +..++.|.+|++.+      .|.|
T Consensus       189 yAPFnIqni--g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as---~g~LNaPWG~a~APa~FG~~sg~l  263 (336)
T TIGR03118       189 YAPFNVQNL--GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVAS---SGRLNAPWGLAIAPESFGSLSGAL  263 (336)
T ss_pred             CCCcceEEE--CCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEecc---CCcccCCceeeeChhhhCCCCCCe
Confidence            347777654  6889987432             12 6788888877776643   34588999999876      3678


Q ss_pred             EEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEE
Q 015463          191 YFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTT  243 (406)
Q Consensus       191 y~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~  243 (406)
                      .+++..                                +|+|-.||+.+++..
T Consensus       264 LVGNFG--------------------------------DG~InaFD~~sG~~~  284 (336)
T TIGR03118       264 LVGNFG--------------------------------DGTINAYDPQSGAQL  284 (336)
T ss_pred             EEeecC--------------------------------CceeEEecCCCCcee
Confidence            887643                                689999999888753

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=92.25  E-value=0.54  Score=42.30  Aligned_cols=124  Identities=17%  Similarity=0.092  Sum_probs=57.7

Q ss_pred             cccccccceeccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCccccccc-CCcC
Q 015463           54 KNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKN-EHIC  130 (406)
Q Consensus        54 ~~~l~~~~~~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  130 (406)
                      ++.....++|..++...=..|++++.|- ||+-+.+|.|+|....  .-..+....   .+            .. ....
T Consensus        66 ~~~~~~~~~Ig~g~W~~F~~i~~d~~G~-LYaV~~~G~lyR~~~~~~~~~~W~~~~---~~------------~iG~~GW  129 (229)
T PF14517_consen   66 NTWDSGSKQIGDGGWNSFKFIFFDPTGV-LYAVTPDGKLYRHPRPTNGSDNWIGGS---GK------------KIGGTGW  129 (229)
T ss_dssp             --HHHH-EEEE-S-GGG-SEEEE-TTS--EEEEETT-EEEEES---STT--HHH-H---SE------------EEE-SSG
T ss_pred             ccccccCcccccCcccceeEEEecCCcc-EEEeccccceeeccCCCccCcchhhcc---ce------------ecccCCC
Confidence            3444666777776333334899999997 9998999999988643  111110000   00            01 1112


Q ss_pred             CcceEEEEeCCCCcEEEEeCCCcEEEE-eCCCCeEEEccc---ccCCcccccccceEEcCCCCEEEEeC
Q 015463          131 GRPLGLRFDKKTGDLYIADAYFGLMKV-GPEGGLATSLAT---EAEGVPLRFTNDLDIDDEGNVYFTDS  195 (406)
Q Consensus       131 ~~p~gi~~d~~~g~L~Vad~~~gl~~~-d~~~~~~~~l~~---~~~~~~~~~~~~l~~d~dG~ly~t~~  195 (406)
                      +....+.+++ +|.||+-+..+.+++. .+..+. .....   ...+........|...++|+||..++
T Consensus       130 ~~f~~vfa~~-~GvLY~i~~dg~~~~~~~p~~~~-~~W~~~s~~v~~~gw~~~~~i~~~~~g~L~~V~~  196 (229)
T PF14517_consen  130 NDFDAVFAGP-NGVLYAITPDGRLYRRYRPDGGS-DRWLSGSGLVGGGGWDSFHFIFFSPDGNLWAVKS  196 (229)
T ss_dssp             GGEEEEEE-T-TS-EEEEETTE-EEEE---SSTT---HHHH-EEEESSSGGGEEEEEE-TTS-EEEE-E
T ss_pred             ccceEEEeCC-CccEEEEcCCCceEEeCCCCCCC-CccccccceeccCCcccceEEeeCCCCcEEEEec
Confidence            3355678888 8999999866557776 343321 11111   11111122345577888999998854

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=92.24  E-value=2.6  Score=39.33  Aligned_cols=103  Identities=15%  Similarity=0.124  Sum_probs=60.4

Q ss_pred             ceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-EEEE
Q 015463           72 ESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYIA  148 (406)
Q Consensus        72 e~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-L~Va  148 (406)
                      ..+.+.|...+|..|+.|+.|..+|-.  ..+.                    .......+-....|.|.| .|+ |.|+
T Consensus       176 n~l~FHPre~ILiS~srD~tvKlFDfsK~saKr--------------------A~K~~qd~~~vrsiSfHP-sGefllvg  234 (430)
T KOG0640|consen  176 NDLDFHPRETILISGSRDNTVKLFDFSKTSAKR--------------------AFKVFQDTEPVRSISFHP-SGEFLLVG  234 (430)
T ss_pred             cceeecchhheEEeccCCCeEEEEecccHHHHH--------------------HHHHhhccceeeeEeecC-CCceEEEe
Confidence            456677777767777888877777643  1100                    000001122245788998 555 6777


Q ss_pred             eCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCC
Q 015463          149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSS  196 (406)
Q Consensus       149 d~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~  196 (406)
                      +...-+..||..+-+.-.-... +..--..++++--.+.|+||+|.+.
T Consensus       235 TdHp~~rlYdv~T~QcfvsanP-d~qht~ai~~V~Ys~t~~lYvTaSk  281 (430)
T KOG0640|consen  235 TDHPTLRLYDVNTYQCFVSANP-DDQHTGAITQVRYSSTGSLYVTASK  281 (430)
T ss_pred             cCCCceeEEeccceeEeeecCc-ccccccceeEEEecCCccEEEEecc
Confidence            7666677778776543222221 1122235777888899999999764

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=91.99  E-value=5.3  Score=35.43  Aligned_cols=29  Identities=14%  Similarity=0.280  Sum_probs=20.2

Q ss_pred             EEEEeCCCCcEEEEeCCC---cEEEEeCCCCeEE
Q 015463          135 GLRFDKKTGDLYIADAYF---GLMKVGPEGGLAT  165 (406)
Q Consensus       135 gi~~d~~~g~L~Vad~~~---gl~~~d~~~~~~~  165 (406)
                      |+..+  +|.++.++...   .|.+.|..+++..
T Consensus        50 GL~~~--~g~i~esTG~yg~S~ir~~~L~~gq~~   81 (262)
T COG3823          50 GLEYL--DGHILESTGLYGFSKIRVSDLTTGQEI   81 (262)
T ss_pred             ceeee--CCEEEEeccccccceeEEEeccCceEE
Confidence            56666  56888877543   4888888887653

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=91.93  E-value=10  Score=37.56  Aligned_cols=143  Identities=16%  Similarity=0.181  Sum_probs=84.5

Q ss_pred             CcccCcceEEEcCC-CCeeEEEecCCEEEEEeCCce-eEEEeecCCCccccCCCCCcccccccCCcCCcce-EEEEeCCC
Q 015463           66 NQIQGPESMAFDPL-GRGPYTGVADGRILFWDGLKW-TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPL-GLRFDKKT  142 (406)
Q Consensus        66 ~~~~gpe~i~~d~~-g~~ly~g~~~g~I~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-gi~~d~~~  142 (406)
                      +.-..-.+.++.+. +.++++|++||.|.-||.... ..+.                      +..++.|. .+.+-+ .
T Consensus       151 ~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~----------------------elnhg~pVe~vl~lp-s  207 (487)
T KOG0310|consen  151 GHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVV----------------------ELNHGCPVESVLALP-S  207 (487)
T ss_pred             CCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeE----------------------EecCCCceeeEEEcC-C
Confidence            33344556666654 447899999999999987621 2211                      11234443 456666 6


Q ss_pred             CcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCC
Q 015463          143 GDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSP  222 (406)
Q Consensus       143 g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  222 (406)
                      |.+++...++.+-.+|..+|.... ....  .-...+.+|....++.-.++.+                           
T Consensus       208 gs~iasAgGn~vkVWDl~~G~qll-~~~~--~H~KtVTcL~l~s~~~rLlS~s---------------------------  257 (487)
T KOG0310|consen  208 GSLIASAGGNSVKVWDLTTGGQLL-TSMF--NHNKTVTCLRLASDSTRLLSGS---------------------------  257 (487)
T ss_pred             CCEEEEcCCCeEEEEEecCCceeh-hhhh--cccceEEEEEeecCCceEeecc---------------------------
Confidence            788887777788889987543221 1111  1123577888877774444432                           


Q ss_pred             CcccCCCCeEEEEeCCCCeEEEecccCCCcc---eEEEecCCCEEEEEeC
Q 015463          223 IKITKDTGRVLKYDPTTKQTTVLLRNLQFPN---GLSLSKDKSFFVFCEG  269 (406)
Q Consensus       223 ~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~n---gi~l~~d~~~l~v~~t  269 (406)
                           -++.+-.||..  ..++ ..+..+|.   .+++++|++.+++--+
T Consensus       258 -----LD~~VKVfd~t--~~Kv-v~s~~~~~pvLsiavs~dd~t~viGms  299 (487)
T KOG0310|consen  258 -----LDRHVKVFDTT--NYKV-VHSWKYPGPVLSIAVSPDDQTVVIGMS  299 (487)
T ss_pred             -----cccceEEEEcc--ceEE-EEeeecccceeeEEecCCCceEEEecc
Confidence                 24678888843  3332 22334443   5789999888866543

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=91.93  E-value=8.1  Score=36.61  Aligned_cols=37  Identities=30%  Similarity=0.492  Sum_probs=27.8

Q ss_pred             cccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec
Q 015463          178 FTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL  246 (406)
Q Consensus       178 ~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~  246 (406)
                      .+|+|..+++|++.++...                                ...|+++|+++|++.-.+
T Consensus       145 HiNsV~~~~~G~yLiS~R~--------------------------------~~~i~~I~~~tG~I~W~l  181 (299)
T PF14269_consen  145 HINSVDKDDDGDYLISSRN--------------------------------TSTIYKIDPSTGKIIWRL  181 (299)
T ss_pred             EeeeeeecCCccEEEEecc--------------------------------cCEEEEEECCCCcEEEEe
Confidence            4788999999998887532                                356888998888765444

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=91.69  E-value=15  Score=36.41  Aligned_cols=222  Identities=15%  Similarity=0.165  Sum_probs=109.6

Q ss_pred             eEEEEeCCC-CcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccccccc
Q 015463          134 LGLRFDKKT-GDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQ  212 (406)
Q Consensus       134 ~gi~~d~~~-g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~  212 (406)
                      ..|+|.|.. .++-|+ +..++..|+..+.........+.    .-+.++.+-.||.+..+..                 
T Consensus        30 ssl~fsp~~P~d~aVt-~S~rvqly~~~~~~~~k~~srFk----~~v~s~~fR~DG~LlaaGD-----------------   87 (487)
T KOG0310|consen   30 SSLCFSPKHPYDFAVT-SSVRVQLYSSVTRSVRKTFSRFK----DVVYSVDFRSDGRLLAAGD-----------------   87 (487)
T ss_pred             eeEecCCCCCCceEEe-cccEEEEEecchhhhhhhHHhhc----cceeEEEeecCCeEEEccC-----------------
Confidence            345666522 234444 34577777766543322111111    2356778888998887632                 


Q ss_pred             ccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCC-cceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee
Q 015463          213 LCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQF-PNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA  291 (406)
Q Consensus       213 ~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~-~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~  291 (406)
                                     ..|.+-.||.++...-........ .+-+.++++.+.++++.. ..++.+||....    ..+..
T Consensus        88 ---------------~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~s-Dd~v~k~~d~s~----a~v~~  147 (487)
T KOG0310|consen   88 ---------------ESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGS-DDKVVKYWDLST----AYVQA  147 (487)
T ss_pred             ---------------CcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecC-CCceEEEEEcCC----cEEEE
Confidence                           247788888554222111222233 356778888888888765 467777764321    12344


Q ss_pred             cCCCCCCceEE----CCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCCEEE
Q 015463          292 ILPGYPDNVRT----NEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQ  367 (406)
Q Consensus       292 ~l~g~pd~i~~----d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~  367 (406)
                      ++.|.-|-++.    +.++.+.++....+.+..+......   ..+..+.-..+....++.++..   +++ ...|+.+.
T Consensus       148 ~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg~pVe~vl~lpsgs---~ia-sAgGn~vk  220 (487)
T KOG0310|consen  148 ELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHGCPVESVLALPSGS---LIA-SAGGNSVK  220 (487)
T ss_pred             EecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCCCceeeEEEcCCCC---EEE-EcCCCeEE
Confidence            56666665543    3445566665444433332211110   1122222222222233332111   221 34555555


Q ss_pred             EEECCCCC--------eeeceeEEEEe--CCEEEEecCCCCeEEEEeC
Q 015463          368 VLEDSKGK--------VVKAISEVEEK--DGKLWMGSVLMPFVAVYDL  405 (406)
Q Consensus       368 ~~~~~~g~--------~~~~~s~~~~~--~g~Ly~Gs~~~~~i~~~~~  405 (406)
                      +..--.|.        ....++++...  +-.|+-|++ ...+-+|++
T Consensus       221 VWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sL-D~~VKVfd~  267 (487)
T KOG0310|consen  221 VWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSL-DRHVKVFDT  267 (487)
T ss_pred             EEEecCCceehhhhhcccceEEEEEeecCCceEeeccc-ccceEEEEc
Confidence            54322221        22356666532  357888888 455666663

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=91.38  E-value=6.3  Score=38.24  Aligned_cols=107  Identities=13%  Similarity=-0.003  Sum_probs=65.8

Q ss_pred             CCcceEEEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccc
Q 015463          130 CGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENI  209 (406)
Q Consensus       130 ~~~p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~  209 (406)
                      .|+...+...++.-.|..+...+-+-.+|..+..+........-.-....+.+++.|+|.+..+.+.             
T Consensus       341 gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~-------------  407 (459)
T KOG0288|consen  341 GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSA-------------  407 (459)
T ss_pred             CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccC-------------
Confidence            4556666666633346666555678888888776655433211111223667788888866555433             


Q ss_pred             cccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCC---cceEEEecCCCEEEEEe
Q 015463          210 PLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQF---PNGLSLSKDKSFFVFCE  268 (406)
Q Consensus       210 ~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~---~ngi~l~~d~~~l~v~~  268 (406)
                                         +|.|+.++..+++++.....-..   -..+++++-|+.++-++
T Consensus       408 -------------------dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad  450 (459)
T KOG0288|consen  408 -------------------DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD  450 (459)
T ss_pred             -------------------CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence                               58899999999998876543322   24566777776665443

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=91.33  E-value=1.1  Score=33.94  Aligned_cols=68  Identities=19%  Similarity=0.274  Sum_probs=42.4

Q ss_pred             cCcceEEEcCCCC---------eeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEe
Q 015463           69 QGPESMAFDPLGR---------GPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFD  139 (406)
Q Consensus        69 ~gpe~i~~d~~g~---------~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d  139 (406)
                      .||+++++..|+-         ..|++..-+.++.+++++++..+.                       ....|.||.++
T Consensus         6 vG~~sFy~TNDhyf~~~~l~~lE~~l~~~~~~Vvyyd~~~~~~va~-----------------------g~~~aNGI~~s   62 (86)
T PF01731_consen    6 VGPDSFYVTNDHYFTDPFLRLLETYLGLPWGNVVYYDGKEVKVVAS-----------------------GFSFANGIAIS   62 (86)
T ss_pred             ECcCcEEEECchhhCcHHHHHHHHHhcCCCceEEEEeCCEeEEeec-----------------------cCCCCceEEEc
Confidence            4677777765531         013444556777777764433321                       13458999999


Q ss_pred             CCCCcEEEEeCC-CcEEEEeC
Q 015463          140 KKTGDLYIADAY-FGLMKVGP  159 (406)
Q Consensus       140 ~~~g~L~Vad~~-~gl~~~d~  159 (406)
                      +++..|||++.. ..|..+..
T Consensus        63 ~~~k~lyVa~~~~~~I~vy~~   83 (86)
T PF01731_consen   63 PDKKYLYVASSLAHSIHVYKR   83 (86)
T ss_pred             CCCCEEEEEeccCCeEEEEEe
Confidence            866789999976 45666643

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=91.14  E-value=15  Score=35.25  Aligned_cols=107  Identities=12%  Similarity=0.142  Sum_probs=67.2

Q ss_pred             eccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC
Q 015463           63 KFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK  141 (406)
Q Consensus        63 ~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~  141 (406)
                      -.-|.+.+..++..-|.-+.|+++..|-.+..||.. +.......+ .                    .+....+.+.+-
T Consensus       230 ~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~G-H--------------------~~~V~~V~~~~~  288 (460)
T KOG0285|consen  230 HYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSG-H--------------------TNPVASVMCQPT  288 (460)
T ss_pred             HhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecC-C--------------------CCcceeEEeecC
Confidence            345677788888887766779999999988889876 222221111 0                    111233445444


Q ss_pred             CCcEEEEeCCCcEEEEeCCCCeEE-EcccccCCcccccccceEEcCCCCEEEEeC
Q 015463          142 TGDLYIADAYFGLMKVGPEGGLAT-SLATEAEGVPLRFTNDLDIDDEGNVYFTDS  195 (406)
Q Consensus       142 ~g~L~Vad~~~gl~~~d~~~~~~~-~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~  195 (406)
                      ++.++-+..+..|..+|...|+.. .+...     ...+..++..++-+++.+.+
T Consensus       289 dpqvit~S~D~tvrlWDl~agkt~~tlt~h-----kksvral~lhP~e~~fASas  338 (460)
T KOG0285|consen  289 DPQVITGSHDSTVRLWDLRAGKTMITLTHH-----KKSVRALCLHPKENLFASAS  338 (460)
T ss_pred             CCceEEecCCceEEEeeeccCceeEeeecc-----cceeeEEecCCchhhhhccC
Confidence            677888887778888998766432 22111     23467788888877777654

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=91.10  E-value=6.5  Score=42.46  Aligned_cols=116  Identities=10%  Similarity=0.123  Sum_probs=67.1

Q ss_pred             cccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCC--c-----ccccccCCcCCcceEEEEe
Q 015463           67 QIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPI--A-----TSYLKNEHICGRPLGLRFD  139 (406)
Q Consensus        67 ~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~p~gi~~d  139 (406)
                      +...-.++.+.+||..++.|+.+.-|..|.....        ..+..|...+.  .     +.+ ......+....+..+
T Consensus        68 h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~--------~~~~~fgs~g~~~~vE~wk~~~-~l~~H~~DV~Dv~Ws  138 (942)
T KOG0973|consen   68 HDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEI--------GSGTVFGSTGGAKNVESWKVVS-ILRGHDSDVLDVNWS  138 (942)
T ss_pred             ccCceeEEEECCCCCeEeeccCcceEEEeeeccc--------CCcccccccccccccceeeEEE-EEecCCCccceeccC
Confidence            3334467779999998888988877666754410        00111211000  0     000 011123556778888


Q ss_pred             CCCCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCC
Q 015463          140 KKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSS  196 (406)
Q Consensus       140 ~~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~  196 (406)
                      + ++.+.+.-.. +.+..++..+-+......   + ....+-++.+||-|..+.+.+.
T Consensus       139 p-~~~~lvS~s~DnsViiwn~~tF~~~~vl~---~-H~s~VKGvs~DP~Gky~ASqsd  191 (942)
T KOG0973|consen  139 P-DDSLLVSVSLDNSVIIWNAKTFELLKVLR---G-HQSLVKGVSWDPIGKYFASQSD  191 (942)
T ss_pred             C-CccEEEEecccceEEEEccccceeeeeee---c-ccccccceEECCccCeeeeecC
Confidence            8 7777766554 678999877653222111   1 1235778999999988777654

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=90.76  E-value=8.9  Score=39.42  Aligned_cols=188  Identities=18%  Similarity=0.183  Sum_probs=93.1

Q ss_pred             CCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC-cEEEEeCCCcEEE
Q 015463           78 PLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG-DLYIADAYFGLMK  156 (406)
Q Consensus        78 ~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g-~L~Vad~~~gl~~  156 (406)
                      +.++.||+|..||.|..|+-.+.....      +..|..        .+++...-...|+... ++ +|+-+.+...+-.
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~------s~~~~a--------sme~HsDWVNDiiL~~-~~~tlIS~SsDtTVK~   99 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEP------STPYIA--------SMEHHSDWVNDIILCG-NGKTLISASSDTTVKV   99 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCc------ccchhh--------hhhhhHhHHhhHHhhc-CCCceEEecCCceEEE
Confidence            356679999999999998754111100      000110        1222223344555554 44 4555555556666


Q ss_pred             EeCCCCeEEEcccccCCcccccccceEE-cCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEE
Q 015463          157 VGPEGGLATSLATEAEGVPLRFTNDLDI-DDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKY  235 (406)
Q Consensus       157 ~d~~~~~~~~l~~~~~~~~~~~~~~l~~-d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~  235 (406)
                      ++...+. . .-...-+.--.++.+|+. .++..+.++.                                .-+++++.|
T Consensus       100 W~~~~~~-~-~c~stir~H~DYVkcla~~ak~~~lvaSg--------------------------------GLD~~IflW  145 (735)
T KOG0308|consen  100 WNAHKDN-T-FCMSTIRTHKDYVKCLAYIAKNNELVASG--------------------------------GLDRKIFLW  145 (735)
T ss_pred             eecccCc-c-hhHhhhhcccchheeeeecccCceeEEec--------------------------------CCCccEEEE
Confidence            6654332 0 000001112235677777 5555555543                                123568888


Q ss_pred             eCCCCeEEEec-------ccCC-Cc----ceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceE--
Q 015463          236 DPTTKQTTVLL-------RNLQ-FP----NGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVR--  301 (406)
Q Consensus       236 d~~t~~~~~~~-------~~~~-~~----ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~--  301 (406)
                      |-+++..+.+.       ..+. .+    ..+|..+.+ +++++....+.|..|+..   +.  +....+.|.-||++  
T Consensus       146 Din~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDpr---t~--~kimkLrGHTdNVr~l  219 (735)
T KOG0308|consen  146 DINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPR---TC--KKIMKLRGHTDNVRVL  219 (735)
T ss_pred             EccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEeccc---cc--cceeeeeccccceEEE
Confidence            88766321111       0111 11    234443333 577776655555555533   22  22334557788865  


Q ss_pred             -ECCCCCEEEEEccCCcchh
Q 015463          302 -TNEKGEFWVAIHCRRSLYS  320 (406)
Q Consensus       302 -~d~~G~lwv~~~~~~~~~~  320 (406)
                       ++.||+-.++..+...+-+
T Consensus       220 l~~dDGt~~ls~sSDgtIrl  239 (735)
T KOG0308|consen  220 LVNDDGTRLLSASSDGTIRL  239 (735)
T ss_pred             EEcCCCCeEeecCCCceEEe
Confidence             5788876666555444433

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=90.69  E-value=23  Score=36.83  Aligned_cols=113  Identities=17%  Similarity=0.169  Sum_probs=63.6

Q ss_pred             eEEEEeCCCCcEEEEeCCC------cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccc
Q 015463          134 LGLRFDKKTGDLYIADAYF------GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKE  207 (406)
Q Consensus       134 ~gi~~d~~~g~L~Vad~~~------gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~  207 (406)
                      .|++.-  +|.||+.-...      .+-+||+.+.+.+........   ..-.+++ .-+|.||+.-.....        
T Consensus       374 ~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~---r~~~gv~-~~~g~iYi~GG~~~~--------  439 (571)
T KOG4441|consen  374 FGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR---RSGHGVA-VLGGKLYIIGGGDGS--------  439 (571)
T ss_pred             ceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCcc---eeeeEEE-EECCEEEEEcCcCCC--------
Confidence            455555  68888765433      388999998877665432111   1111222 338899998642110        


Q ss_pred             cccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEeccc--CCCcceEEEecCCCEEEEEeCCC-----CeEEEEEee
Q 015463          208 NIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRN--LQFPNGLSLSKDKSFFVFCEGSV-----GRLHKYWLI  280 (406)
Q Consensus       208 ~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~--~~~~ngi~l~~d~~~l~v~~t~~-----~~i~~~~~~  280 (406)
                                        ...-..+.+|||.+++++....-  -..-.|++..  ++.+|+.....     ..+.+|+..
T Consensus       440 ------------------~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~  499 (571)
T KOG4441|consen  440 ------------------SNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL--NGKIYVVGGFDGTSALSSVERYDPE  499 (571)
T ss_pred             ------------------ccccceEEEEcCCCCceeecCCcccccccceEEEE--CCEEEEECCccCCCccceEEEEcCC
Confidence                              00124699999999988765422  2223455543  34577775422     236667754

>PHA02713 hypothetical protein; Provisional

Probab=90.67  E-value=21  Score=37.00  Aligned_cols=153  Identities=8%  Similarity=-0.016  Sum_probs=69.8

Q ss_pred             CCcEEEEeCCC------cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccc
Q 015463          142 TGDLYIADAYF------GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCS  215 (406)
Q Consensus       142 ~g~L~Vad~~~------gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~  215 (406)
                      +|.||+.....      .+.+||+.+++.+.+......  .... .++ .-+|.||+........  .+.. ...+..+-
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~--r~~~-~~~-~~~g~IYviGG~~~~~--~~~~-~~~~~~~~  423 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIA--LSSY-GMC-VLDQYIYIIGGRTEHI--DYTS-VHHMNSID  423 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcc--cccc-cEE-EECCEEEEEeCCCccc--cccc-cccccccc
Confidence            67888864432      378899998877655432111  1111 222 2378999864321000  0000 00000000


Q ss_pred             cCCCCCCCcccCCCCeEEEEeCCCCeEEEeccc--CCCcceEEEecCCCEEEEEeCCC------CeEEEEEeeCCCCcce
Q 015463          216 SLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRN--LQFPNGLSLSKDKSFFVFCEGSV------GRLHKYWLIGEKAGNL  287 (406)
Q Consensus       216 e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~--~~~~ngi~l~~d~~~l~v~~t~~------~~i~~~~~~g~~~~~~  287 (406)
                      .   .   .-......+.+|||++++++.+..-  .....+++.. ++ .+|+.....      ..+.+|++..  ..+.
T Consensus       424 ~---~---~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~-~~-~IYv~GG~~~~~~~~~~ve~Ydp~~--~~~W  493 (557)
T PHA02713        424 M---E---EDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSH-KD-DIYVVCDIKDEKNVKTCIFRYNTNT--YNGW  493 (557)
T ss_pred             c---c---ccccccceEEEECCCCCeEeecCCCCcccccCcEEEE-CC-EEEEEeCCCCCCccceeEEEecCCC--CCCe
Confidence            0   0   0000124699999999988765421  1112244433 34 477764321      2467777542  0233


Q ss_pred             eeeecCCC--CCCceEECCCCCEEEEE
Q 015463          288 EAFAILPG--YPDNVRTNEKGEFWVAI  312 (406)
Q Consensus       288 ~~~~~l~g--~pd~i~~d~~G~lwv~~  312 (406)
                      +....++-  .--+++. -+|.||+..
T Consensus       494 ~~~~~m~~~r~~~~~~~-~~~~iyv~G  519 (557)
T PHA02713        494 ELITTTESRLSALHTIL-HDNTIMMLH  519 (557)
T ss_pred             eEccccCcccccceeEE-ECCEEEEEe
Confidence            33333321  1123333 367888854

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=90.59  E-value=6.5  Score=39.82  Aligned_cols=161  Identities=13%  Similarity=0.198  Sum_probs=89.7

Q ss_pred             ceEEEcCCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC-cEEE
Q 015463           72 ESMAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG-DLYI  147 (406)
Q Consensus        72 e~i~~d~~g~~ly~g~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g-~L~V  147 (406)
                      .++-+.+...++-+|+.+|.+-.||+.   .+..+-... ....  .         .-......+..+.|+. +| .+-|
T Consensus       179 N~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~-~v~s--~---------pg~~~~~svTal~F~d-~gL~~aV  245 (703)
T KOG2321|consen  179 NVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAAS-SVNS--H---------PGGDAAPSVTALKFRD-DGLHVAV  245 (703)
T ss_pred             eeeeecCccceEEecccCceEEEecchhhhhheeeeccc-ccCC--C---------ccccccCcceEEEecC-CceeEEe
Confidence            556666666767889999999999876   222221110 0000  0         0001122366788875 44 5677


Q ss_pred             EeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463          148 ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK  227 (406)
Q Consensus       148 ad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  227 (406)
                      +++.+.++.+|..+.+-..........+...+.-+..|....++-.|.                                
T Consensus       246 Gts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk--------------------------------  293 (703)
T KOG2321|consen  246 GTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDK--------------------------------  293 (703)
T ss_pred             eccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecch--------------------------------
Confidence            887777999998876533333332333332222222221223333332                                


Q ss_pred             CCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          228 DTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       228 ~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                        ..+-.||+.+|+.-...+.....|-+|+-++...++.+.. ...+..|.+-
T Consensus       294 --~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane-~~~m~~yyiP  343 (703)
T KOG2321|consen  294 --RILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANE-SSKMHTYYIP  343 (703)
T ss_pred             --HHhhhcccccCCceeeccccCCcCceeeecCCceEEEecC-CCcceeEEcc
Confidence              1244567788877777777777888998888766655543 4566666543

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=90.14  E-value=21  Score=35.31  Aligned_cols=58  Identities=17%  Similarity=0.161  Sum_probs=39.7

Q ss_pred             eEEEEeCCCCcEEEEe-CCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCC
Q 015463          134 LGLRFDKKTGDLYIAD-AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSS  196 (406)
Q Consensus       134 ~gi~~d~~~g~L~Vad-~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~  196 (406)
                      ..++-++ .|.+.++. -.+.||.+...+|.+-.....    -...+..|.+..||.++||.+.
T Consensus        85 ~al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~v~~a----HYQ~ITcL~fs~dgs~iiTgsk  143 (476)
T KOG0646|consen   85 HALASSN-LGYFLLAGTISGNLYLWELSSGILLNVLSA----HYQSITCLKFSDDGSHIITGSK  143 (476)
T ss_pred             eeeecCC-CceEEEeecccCcEEEEEeccccHHHHHHh----hccceeEEEEeCCCcEEEecCC
Confidence            4667676 78877776 446799999998865332211    1234677888889999998654

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=89.92  E-value=19  Score=34.57  Aligned_cols=121  Identities=18%  Similarity=0.198  Sum_probs=61.0

Q ss_pred             EEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeee---ec-------CCCCCCceEEC-CCCCEEEEEccCCcchhh---
Q 015463          256 SLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAF---AI-------LPGYPDNVRTN-EKGEFWVAIHCRRSLYSH---  321 (406)
Q Consensus       256 ~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~---~~-------l~g~pd~i~~d-~~G~lwv~~~~~~~~~~~---  321 (406)
                      +++.++..+|+. +.++.|+..++.+....-...+   .+       .||-=.-++++ ..|+|||-++.+..--..   
T Consensus       190 ~~~~~~~~~~F~-Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpg  268 (342)
T PF06433_consen  190 AYSRDGGRLYFV-SYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPG  268 (342)
T ss_dssp             EEETTTTEEEEE-BTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-E
T ss_pred             ceECCCCeEEEE-ecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCc
Confidence            344555566665 5678999999987643222222   11       12222235664 567899988754321111   


Q ss_pred             --hhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCCEEEEEECCCCCeee
Q 015463          322 --LMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVK  378 (406)
Q Consensus       322 --~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~  378 (406)
                        ...-+...++.++|++.... ...+.+-......++.++.....+.+|...+|+...
T Consensus       269 teVWv~D~~t~krv~Ri~l~~~-~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~  326 (342)
T PF06433_consen  269 TEVWVYDLKTHKRVARIPLEHP-IDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR  326 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEEEE-ESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred             eEEEEEECCCCeEEEEEeCCCc-cceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence              11114556777777766433 223444334444566666655566666666665443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF14339 DUF4394: Domain of unknown function (DUF4394)

Probab=89.40  E-value=15  Score=33.35  Aligned_cols=37  Identities=27%  Similarity=0.424  Sum_probs=31.3

Q ss_pred             CcceEEEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEc
Q 015463          131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSL  167 (406)
Q Consensus       131 ~~p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l  167 (406)
                      .+..||.+-+.+|.||--....+||.+|+.++..+.+
T Consensus        27 e~l~GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~v   63 (236)
T PF14339_consen   27 ESLVGIDFRPANGQLYGLGSTGRLYTINPATGAATPV   63 (236)
T ss_pred             CeEEEEEeecCCCCEEEEeCCCcEEEEECCCCeEEEe
Confidence            4467999998899999887778999999999987665

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=89.38  E-value=26  Score=35.44  Aligned_cols=118  Identities=15%  Similarity=0.132  Sum_probs=65.1

Q ss_pred             eEEEEeCCCCeEEEecccCCCcceEEEecCCCEE-EEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCc-eEECCCCCE
Q 015463          231 RVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFF-VFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDN-VRTNEKGEF  308 (406)
Q Consensus       231 ~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l-~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~-i~~d~~G~l  308 (406)
                      .|+.++.++....+-+..-.-.+.++++++++-. .|..---..+..|++++      .++.+++--|.| +.+++.|++
T Consensus       252 ~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~------~~v~df~egpRN~~~fnp~g~i  325 (566)
T KOG2315|consen  252 TLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG------KPVFDFPEGPRNTAFFNPHGNI  325 (566)
T ss_pred             eEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC------CEeEeCCCCCccceEECCCCCE
Confidence            4888887744444434433344678888887543 33333345788888764      233344333666 667999995


Q ss_pred             E-EEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCCEEEEE
Q 015463          309 W-VAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVL  369 (406)
Q Consensus       309 w-v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~  369 (406)
                      . +|..+....-..+.  +-..++.+.++...             +..++.+.|+|+.+..-
T Consensus       326 i~lAGFGNL~G~mEvw--Dv~n~K~i~~~~a~-------------~tt~~eW~PdGe~flTA  372 (566)
T KOG2315|consen  326 ILLAGFGNLPGDMEVW--DVPNRKLIAKFKAA-------------NTTVFEWSPDGEYFLTA  372 (566)
T ss_pred             EEEeecCCCCCceEEE--eccchhhccccccC-------------CceEEEEcCCCcEEEEE
Confidence            4 44332211100000  12236666665433             23478888999877654

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=89.18  E-value=20  Score=33.93  Aligned_cols=141  Identities=16%  Similarity=0.210  Sum_probs=64.4

Q ss_pred             CcceEEEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccccc
Q 015463          131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIP  210 (406)
Q Consensus       131 ~~p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~  210 (406)
                      +.|.++.... ++..+++.....||+=.-.+...+.+.....    ..++++...+||.+....+.              
T Consensus       104 gs~~~i~~l~-~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~----gs~~~~~r~~dG~~vavs~~--------------  164 (302)
T PF14870_consen  104 GSPFGITALG-DGSAELAGDRGAIYRTTDGGKTWQAVVSETS----GSINDITRSSDGRYVAVSSR--------------  164 (302)
T ss_dssp             S-EEEEEEEE-TTEEEEEETT--EEEESSTTSSEEEEE-S--------EEEEEE-TTS-EEEEETT--------------
T ss_pred             CCeeEEEEcC-CCcEEEEcCCCcEEEeCCCCCCeeEcccCCc----ceeEeEEECCCCcEEEEECc--------------
Confidence            5577776554 5677777766667766544444444433222    34566777788875544432              


Q ss_pred             ccccccCCCCCCCcccCCCCeEE-EEeCCCCeEEEecc-cCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCccee
Q 015463          211 LQLCSSLNDPSPIKITKDTGRVL-KYDPTTKQTTVLLR-NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLE  288 (406)
Q Consensus       211 ~~~~~e~~~~~~~~~~~~~g~l~-~~d~~t~~~~~~~~-~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~  288 (406)
                                         |.++ ..|+.....+.... .-..-+.+.+++|+. +|+.. .++.|..-+ ..   ...+
T Consensus       165 -------------------G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~-lw~~~-~Gg~~~~s~-~~---~~~~  219 (302)
T PF14870_consen  165 -------------------GNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN-LWMLA-RGGQIQFSD-DP---DDGE  219 (302)
T ss_dssp             -------------------SSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS--EEEEE-TTTEEEEEE--T---TEEE
T ss_pred             -------------------ccEEEEecCCCccceEEccCccceehhceecCCCC-EEEEe-CCcEEEEcc-CC---CCcc
Confidence                               4454 34553223333332 223445678888875 55554 334554443 11   1122


Q ss_pred             eeec----C--CCC-CCceEECCCCCEEEEEccC
Q 015463          289 AFAI----L--PGY-PDNVRTNEKGEFWVAIHCR  315 (406)
Q Consensus       289 ~~~~----l--~g~-pd~i~~d~~G~lwv~~~~~  315 (406)
                      .+..    .  .++ --.++..+++.+|++..++
T Consensus       220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G  253 (302)
T PF14870_consen  220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG  253 (302)
T ss_dssp             EE---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred             ccccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence            2221    1  111 1234667788899988765

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.08  E-value=36  Score=36.67  Aligned_cols=153  Identities=16%  Similarity=0.241  Sum_probs=92.1

Q ss_pred             cCcceEEEcCCCCeeEEEecCCEEEEEeCC--c-eeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcE
Q 015463           69 QGPESMAFDPLGRGPYTGVADGRILFWDGL--K-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL  145 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L  145 (406)
                      ...-++.+.|.-=.+.++.++|.|--||-.  . +..|                      .+| .|..-|+.|.+ .+-|
T Consensus        10 sRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rF----------------------deH-dGpVRgv~FH~-~qpl   65 (1202)
T KOG0292|consen   10 SRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRF----------------------DEH-DGPVRGVDFHP-TQPL   65 (1202)
T ss_pred             ccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhh----------------------hcc-CCccceeeecC-CCCe
Confidence            344566777765556778999999888865  1 1111                      112 35567999999 8899


Q ss_pred             EEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCc
Q 015463          146 YIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIK  224 (406)
Q Consensus       146 ~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  224 (406)
                      +|...+ ..|-.++-++.+.  +.+. -| -+.++..+.++.+ .=|+-..|                            
T Consensus        66 FVSGGDDykIkVWnYk~rrc--lftL-~G-HlDYVRt~~FHhe-yPWIlSAS----------------------------  112 (1202)
T KOG0292|consen   66 FVSGGDDYKIKVWNYKTRRC--LFTL-LG-HLDYVRTVFFHHE-YPWILSAS----------------------------  112 (1202)
T ss_pred             EEecCCccEEEEEeccccee--hhhh-cc-ccceeEEeeccCC-CceEEEcc----------------------------
Confidence            998654 4566666655432  2111 11 1345666666654 34554433                            


Q ss_pred             ccCCCCeEEEEeCCCCeEEEecccCC-CcceEEEecCCCEEEEEeCCCCeEEEEEeeCC
Q 015463          225 ITKDTGRVLKYDPTTKQTTVLLRNLQ-FPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE  282 (406)
Q Consensus       225 ~~~~~g~l~~~d~~t~~~~~~~~~~~-~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~  282 (406)
                         .+..+..+|-+++.....+++.. +.-+-++.|-++ ++|+.+-...|.+++++|-
T Consensus       113 ---DDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED-lIVSaSLDQTVRVWDisGL  167 (1202)
T KOG0292|consen  113 ---DDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED-LIVSASLDQTVRVWDISGL  167 (1202)
T ss_pred             ---CCCeEEEEeccCCceEEEEecCceEEEeeccCCccc-eEEEecccceEEEEeecch
Confidence               12346667777776665555532 223445777665 5577777788888888874

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=89.03  E-value=6.7  Score=39.14  Aligned_cols=81  Identities=21%  Similarity=0.156  Sum_probs=49.2

Q ss_pred             CeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCC--eEEEEEeeCCCCcceeeeecCCCCCCceEECCCCC
Q 015463          230 GRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVG--RLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE  307 (406)
Q Consensus       230 g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~--~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~  307 (406)
                      -.||.+|..+++...+.+.......-.++|||+.++++....+  .|++++++|...   ..+..-.+...+-..++||.
T Consensus       262 ~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~---~riT~~~~~~~~p~~SpdG~  338 (425)
T COG0823         262 PDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV---TRLTFSGGGNSNPVWSPDGD  338 (425)
T ss_pred             ccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce---eEeeccCCCCcCccCCCCCC
Confidence            3589999988886665544333334568999999988865444  588888876432   22221112222445567787


Q ss_pred             EEEEEc
Q 015463          308 FWVAIH  313 (406)
Q Consensus       308 lwv~~~  313 (406)
                      ..+-..
T Consensus       339 ~i~~~~  344 (425)
T COG0823         339 KIVFES  344 (425)
T ss_pred             EEEEEe
Confidence            555443

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=89.00  E-value=19  Score=33.25  Aligned_cols=108  Identities=13%  Similarity=0.111  Sum_probs=65.9

Q ss_pred             cCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCC
Q 015463           65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT  142 (406)
Q Consensus        65 ~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~  142 (406)
                      ++.-....++|+.|.|+.|-+++.+..+..+...  .+.-++..                    |...+...++++.. +
T Consensus        58 ~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~l--------------------EGHEnEVK~Vaws~-s  116 (312)
T KOG0645|consen   58 DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATL--------------------EGHENEVKCVAWSA-S  116 (312)
T ss_pred             ccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeee--------------------eccccceeEEEEcC-C
Confidence            3444667899999999988889999988888654  44444322                    22245577899998 6


Q ss_pred             CcEEE-EeCCCcEEEEeCC-CCeEEEcccccCCcccccccceEEcCCCCEEEEeC
Q 015463          143 GDLYI-ADAYFGLMKVGPE-GGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDS  195 (406)
Q Consensus       143 g~L~V-ad~~~gl~~~d~~-~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~  195 (406)
                      |++.. +..++.++.+..+ .+++....-..+  -...+-.+..+|.-.|.|+-+
T Consensus       117 G~~LATCSRDKSVWiWe~deddEfec~aVL~~--HtqDVK~V~WHPt~dlL~S~S  169 (312)
T KOG0645|consen  117 GNYLATCSRDKSVWIWEIDEDDEFECIAVLQE--HTQDVKHVIWHPTEDLLFSCS  169 (312)
T ss_pred             CCEEEEeeCCCeEEEEEecCCCcEEEEeeecc--ccccccEEEEcCCcceeEEec
Confidence            66544 4334555555433 344544322111  112345567777667777764

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=88.64  E-value=23  Score=33.92  Aligned_cols=150  Identities=15%  Similarity=0.084  Sum_probs=80.3

Q ss_pred             ceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE-eC
Q 015463           72 ESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA-DA  150 (406)
Q Consensus        72 e~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va-d~  150 (406)
                      =+++..|+.++.-+|..|..-+.|+...-. ++..       |           .++ ......+.|.. +|.+... +.
T Consensus        68 Favsl~P~~~l~aTGGgDD~AflW~~~~ge-~~~e-------l-----------tgH-KDSVt~~~Fsh-dgtlLATGdm  126 (399)
T KOG0296|consen   68 FAVSLHPNNNLVATGGGDDLAFLWDISTGE-FAGE-------L-----------TGH-KDSVTCCSFSH-DGTLLATGDM  126 (399)
T ss_pred             EEEEeCCCCceEEecCCCceEEEEEccCCc-ceeE-------e-----------cCC-CCceEEEEEcc-CceEEEecCC
Confidence            355566777766677777777777654100 1100       0           111 12345667876 5654433 33


Q ss_pred             CCcEEEEeCCCCeEEE-cccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCC
Q 015463          151 YFGLMKVGPEGGLATS-LATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDT  229 (406)
Q Consensus       151 ~~gl~~~d~~~~~~~~-l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~  229 (406)
                      .+.|..+..+++..+. +...     ...+.=+..++.+.+.++-+                                .+
T Consensus       127 sG~v~v~~~stg~~~~~~~~e-----~~dieWl~WHp~a~illAG~--------------------------------~D  169 (399)
T KOG0296|consen  127 SGKVLVFKVSTGGEQWKLDQE-----VEDIEWLKWHPRAHILLAGS--------------------------------TD  169 (399)
T ss_pred             CccEEEEEcccCceEEEeecc-----cCceEEEEecccccEEEeec--------------------------------CC
Confidence            3446666665554332 2111     11122234566666666533                                35


Q ss_pred             CeEEEEeCCCCeEEEeccc-CCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          230 GRVLKYDPTTKQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       230 g~l~~~d~~t~~~~~~~~~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                      |.++.|....+....+..+ -...+.=.+.|||+.++...+ .+.|.+++++
T Consensus       170 GsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~-dgti~~Wn~k  220 (399)
T KOG0296|consen  170 GSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD-DGTIIVWNPK  220 (399)
T ss_pred             CcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec-CceEEEEecC
Confidence            7898888776433333333 222334457899998876655 5778888866

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=88.55  E-value=20  Score=33.04  Aligned_cols=160  Identities=16%  Similarity=0.057  Sum_probs=85.7

Q ss_pred             ccceecc--CcccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEE
Q 015463           59 NSEIKFL--NQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGL  136 (406)
Q Consensus        59 ~~~~~~~--~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi  136 (406)
                      +.|++..  |.--..+++.+|.+-..+.+|+.|..+..||-+.-+.++...                     .......+
T Consensus        41 nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k---------------------~~~~Vk~~   99 (327)
T KOG0643|consen   41 NGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK---------------------TNSPVKRV   99 (327)
T ss_pred             CCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee---------------------cCCeeEEE
Confidence            4455543  333345888888777779999999988888866212222110                     01113466


Q ss_pred             EEeCCCCcEEEEeCCC------cEEEEeCCCCe--------EEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhh
Q 015463          137 RFDKKTGDLYIADAYF------GLMKVGPEGGL--------ATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRR  202 (406)
Q Consensus       137 ~~d~~~g~L~Vad~~~------gl~~~d~~~~~--------~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~  202 (406)
                      -|+. +|++.++...+      -|..+|.....        +..+...     -..++....++-|...++         
T Consensus       100 ~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~-----~skit~a~Wg~l~~~ii~---------  164 (327)
T KOG0643|consen  100 DFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP-----DSKITSALWGPLGETIIA---------  164 (327)
T ss_pred             eecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC-----ccceeeeeecccCCEEEE---------
Confidence            7887 78876665432      14444433111        1111110     122334444444444443         


Q ss_pred             ccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEeccc--CCCcceEEEecCCCEEEEEeCCCCeEEEEE
Q 015463          203 QMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRN--LQFPNGLSLSKDKSFFVFCEGSVGRLHKYW  278 (406)
Q Consensus       203 ~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~--~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~  278 (406)
                                             +..+|.|-+||..+|+..+-...  -..-|.+++++|.. .+++.+....-..++
T Consensus       165 -----------------------Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T-~FiT~s~Dttakl~D  218 (327)
T KOG0643|consen  165 -----------------------GHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT-YFITGSKDTTAKLVD  218 (327)
T ss_pred             -----------------------ecCCCcEEEEEcccCceeeechhhhccccccccccCCcc-eEEecccCccceeee
Confidence                                   33468899999998754333211  23457789999985 445544333333344

>PRK13616 lipoprotein LpqB; Provisional

Probab=88.00  E-value=37  Score=35.49  Aligned_cols=38  Identities=16%  Similarity=-0.039  Sum_probs=23.1

Q ss_pred             cccCCC-cceEEEecCCCEEEEEeCCCCeEEEEEeeCCC
Q 015463          246 LRNLQF-PNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEK  283 (406)
Q Consensus       246 ~~~~~~-~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~  283 (406)
                      ...+.. +..+++..|+..+...+.....++++.++|..
T Consensus       492 ~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~  530 (591)
T PRK13616        492 GPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSN  530 (591)
T ss_pred             ecccCCccccceEecCCEEEEEecCCCCceEEEecCCcc
Confidence            334443 35677887776443333334569999998753

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=87.89  E-value=17  Score=34.51  Aligned_cols=123  Identities=19%  Similarity=0.294  Sum_probs=64.8

Q ss_pred             eEEEEeCCCCcEEEEeCC-CcEEEEeCCCCeEEEcccccC-------CcccccccceEEc----CCCCEEEEeCC-Cchh
Q 015463          134 LGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAE-------GVPLRFTNDLDID----DEGNVYFTDSS-TNYQ  200 (406)
Q Consensus       134 ~gi~~d~~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~-------~~~~~~~~~l~~d----~dG~ly~t~~~-~~~~  200 (406)
                      ++|..+. +|+++|+... ..|+++++++|++.=......       +..+..-.+..+-    .+++|-+=|-. ... 
T Consensus       147 NsV~~~~-~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~~~~~-  224 (299)
T PF14269_consen  147 NSVDKDD-DGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNANSDF-  224 (299)
T ss_pred             eeeeecC-CccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCCCCCC-
Confidence            4677776 7888887654 679999998887643222110       1112233333333    34444443321 000 


Q ss_pred             hhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcc--------eEEEecCCCEEEEEeCCCC
Q 015463          201 RRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPN--------GLSLSKDKSFFVFCEGSVG  272 (406)
Q Consensus       201 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~n--------gi~l~~d~~~l~v~~t~~~  272 (406)
                                            -......++++.+|+++.+.+.+......+.        .+..-++|+ +++.+...+
T Consensus       225 ----------------------~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn-~li~~g~~g  281 (299)
T PF14269_consen  225 ----------------------NGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGN-VLIGWGNNG  281 (299)
T ss_pred             ----------------------CCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCC-EEEecCCCc
Confidence                                  0003346889999999776655432210111        234445565 446666666


Q ss_pred             eEEEEEeeC
Q 015463          273 RLHKYWLIG  281 (406)
Q Consensus       273 ~i~~~~~~g  281 (406)
                      ++.-|+.+|
T Consensus       282 ~~~E~~~~G  290 (299)
T PF14269_consen  282 RISEFTPDG  290 (299)
T ss_pred             eEEEECCCC
Confidence            676666443

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=87.84  E-value=8.2  Score=40.15  Aligned_cols=152  Identities=18%  Similarity=0.127  Sum_probs=86.2

Q ss_pred             cceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcE-EE
Q 015463           71 PESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL-YI  147 (406)
Q Consensus        71 pe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L-~V  147 (406)
                      -.++++++|+..|++....+-+..|...  .+...-                    ...+ .+....|+|++ .+.| -.
T Consensus        65 ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irsw--------------------Ka~H-e~Pvi~ma~~~-~g~LlAt  122 (775)
T KOG0319|consen   65 ITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSW--------------------KAIH-EAPVITMAFDP-TGTLLAT  122 (775)
T ss_pred             hheeeecCCccEEEEeeccceEEEEEcccchHhHhH--------------------hhcc-CCCeEEEEEcC-CCceEEe
Confidence            3567888888888888877766556544  111000                    0001 23346899998 5533 34


Q ss_pred             EeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463          148 ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK  227 (406)
Q Consensus       148 ad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  227 (406)
                      +++.+.+..+|.+.+..+......+|    -+..+.+.++-+.|+--+                              +.
T Consensus       123 ggaD~~v~VWdi~~~~~th~fkG~gG----vVssl~F~~~~~~~lL~s------------------------------g~  168 (775)
T KOG0319|consen  123 GGADGRVKVWDIKNGYCTHSFKGHGG----VVSSLLFHPHWNRWLLAS------------------------------GA  168 (775)
T ss_pred             ccccceEEEEEeeCCEEEEEecCCCc----eEEEEEeCCccchhheee------------------------------cC
Confidence            44446678888887776654433333    245566666544332221                              34


Q ss_pred             CCCeEEEEeCCCCeEE--EecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEe
Q 015463          228 DTGRVLKYDPTTKQTT--VLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWL  279 (406)
Q Consensus       228 ~~g~l~~~d~~t~~~~--~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~  279 (406)
                      .++.+..||..++...  .+........++++++|+..++... ...-+..+++
T Consensus       169 ~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~-RDkvi~vwd~  221 (775)
T KOG0319|consen  169 TDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVG-RDKVIIVWDL  221 (775)
T ss_pred             CCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEec-cCcEEEEeeh
Confidence            4678888998866541  1122234456899999977664443 2334555555

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=87.71  E-value=2.7  Score=26.87  Aligned_cols=29  Identities=17%  Similarity=0.349  Sum_probs=20.2

Q ss_pred             eEEEEeCCCCeEE-EecccCCCcceEEEec
Q 015463          231 RVLKYDPTTKQTT-VLLRNLQFPNGLSLSK  259 (406)
Q Consensus       231 ~l~~~d~~t~~~~-~~~~~~~~~ngi~l~~  259 (406)
                      .+.+-+.++...+ .+.+.+..|+||++++
T Consensus        13 ~I~~a~~dGs~~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen   13 SIERANLDGSNRRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             EEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred             EEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence            5666666655544 4457789999999864

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=87.49  E-value=23  Score=32.53  Aligned_cols=101  Identities=12%  Similarity=0.121  Sum_probs=58.8

Q ss_pred             CcceEEEcCC-CCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463           70 GPESMAFDPL-GRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (406)
Q Consensus        70 gpe~i~~d~~-g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va  148 (406)
                      ..|.+++++. .+++.+.+.+..|.+|+...-+.....                    +.. +.-.-+...|+++.+.++
T Consensus        66 svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i--------------------~~~-~eni~i~wsp~g~~~~~~  124 (313)
T KOG1407|consen   66 SVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARI--------------------ETK-GENINITWSPDGEYIAVG  124 (313)
T ss_pred             chhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEe--------------------ecc-CcceEEEEcCCCCEEEEe
Confidence            4577788864 445667777888888886522222111                    111 112345677744555666


Q ss_pred             eCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCC
Q 015463          149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSS  196 (406)
Q Consensus       149 d~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~  196 (406)
                      +....|..+|..+.++..  .   .....+.|.+....+++++|-+.+
T Consensus       125 ~kdD~it~id~r~~~~~~--~---~~~~~e~ne~~w~~~nd~Fflt~G  167 (313)
T KOG1407|consen  125 NKDDRITFIDARTYKIVN--E---EQFKFEVNEISWNNSNDLFFLTNG  167 (313)
T ss_pred             cCcccEEEEEecccceee--h---hcccceeeeeeecCCCCEEEEecC
Confidence            655678888866543321  1   112346778888878888887753

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=87.32  E-value=38  Score=34.79  Aligned_cols=62  Identities=11%  Similarity=0.098  Sum_probs=36.2

Q ss_pred             cceEEEecCCCEEEEEe--CCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCC-CCEEEEEccC
Q 015463          252 PNGLSLSKDKSFFVFCE--GSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEK-GEFWVAIHCR  315 (406)
Q Consensus       252 ~ngi~l~~d~~~l~v~~--t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~-G~lwv~~~~~  315 (406)
                      .+.+.+..+|+++-.+.  ..+.+|..+.++..+..  ..|....|.+..+.+-+. -.++|++...
T Consensus       524 i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ--~PF~kskG~vq~v~FHPs~p~lfVaTq~~  588 (733)
T KOG0650|consen  524 IRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ--SPFRKSKGLVQRVKFHPSKPYLFVATQRS  588 (733)
T ss_pred             cceeeeecCCceEEEeccCCCcceEEEEeccccccc--CchhhcCCceeEEEecCCCceEEEEeccc
Confidence            34567777887764442  23467888888733222  345444566666666443 3477877543

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=87.23  E-value=48  Score=35.86  Aligned_cols=23  Identities=13%  Similarity=0.255  Sum_probs=20.2

Q ss_pred             CCcEEEEeCCCcEEEEeCCCCeE
Q 015463          142 TGDLYIADAYFGLMKVGPEGGLA  164 (406)
Q Consensus       142 ~g~L~Vad~~~gl~~~d~~~~~~  164 (406)
                      +|.||+++..+.|+.+|.++|+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~  216 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKE  216 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcE
Confidence            68999999888899999998864

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=87.17  E-value=26  Score=32.81  Aligned_cols=109  Identities=15%  Similarity=0.059  Sum_probs=72.6

Q ss_pred             ceEEEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccccccc
Q 015463          133 PLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQ  212 (406)
Q Consensus       133 p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~  212 (406)
                      ...|.|++..+.|.|+.+.+.|..|+......+....  .+.|   +-+-++.++-.+|+++.                 
T Consensus        16 IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~--~~~p---lL~c~F~d~~~~~~G~~-----------------   73 (323)
T KOG1036|consen   16 ISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK--HGAP---LLDCAFADESTIVTGGL-----------------   73 (323)
T ss_pred             eeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee--cCCc---eeeeeccCCceEEEecc-----------------
Confidence            3467888767889999887777777765543322111  1222   22445555667888764                 


Q ss_pred             ccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          213 LCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       213 ~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                                      +|.|.+||..++....+...-....+|..++ +...+++..+..+|..++..
T Consensus        74 ----------------dg~vr~~Dln~~~~~~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R  124 (323)
T KOG1036|consen   74 ----------------DGQVRRYDLNTGNEDQIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPR  124 (323)
T ss_pred             ----------------CceEEEEEecCCcceeeccCCCceEEEEeec-cCCeEEEcccCccEEEEecc
Confidence                            3789999999998877765555556777765 33466888888888888754

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.02  E-value=3.4  Score=44.86  Aligned_cols=204  Identities=16%  Similarity=0.177  Sum_probs=95.5

Q ss_pred             eEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCC-CcEEEEeCCC
Q 015463           83 PYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAY-FGLMKVGPEG  161 (406)
Q Consensus        83 ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~-~gl~~~d~~~  161 (406)
                      |-.|..||.|..|++..+  +....   .+...         ......|...|+.|.+..+++..+.+. +.|+.+|...
T Consensus        83 IaGG~edG~I~ly~p~~~--~~~~~---~~~la---------~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn  148 (1049)
T KOG0307|consen   83 IAGGLEDGNIVLYDPASI--IANAS---EEVLA---------TKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNK  148 (1049)
T ss_pred             eeccccCCceEEecchhh--ccCcc---hHHHh---------hhcccCCceeeeeccccCCceeeccCCCCcEEEeccCC
Confidence            566788999999987632  00000   00000         001113667899999856666655444 4599999764


Q ss_pred             CeEEEcccccCCcccccccceEEcCC-CCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCC
Q 015463          162 GLATSLATEAEGVPLRFTNDLDIDDE-GNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTK  240 (406)
Q Consensus       162 ~~~~~l~~~~~~~~~~~~~~l~~d~d-G~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~  240 (406)
                      -+ +.+... .......+..|...+. -.|+.+                                +..+|+...+|.+.+
T Consensus       149 ~~-tP~~~~-~~~~~~eI~~lsWNrkvqhILAS--------------------------------~s~sg~~~iWDlr~~  194 (1049)
T KOG0307|consen  149 PE-TPFTPG-SQAPPSEIKCLSWNRKVSHILAS--------------------------------GSPSGRAVIWDLRKK  194 (1049)
T ss_pred             cC-CCCCCC-CCCCcccceEeccchhhhHHhhc--------------------------------cCCCCCceeccccCC
Confidence            21 111100 0001112222222221 122222                                334578888888754


Q ss_pred             eE-EEeccc--CCCcceEEEecCCCEEEEEeCCCCe---EEEEEeeCCCCcceeeeecCCCCCCceE---EC-CCCCEEE
Q 015463          241 QT-TVLLRN--LQFPNGLSLSKDKSFFVFCEGSVGR---LHKYWLIGEKAGNLEAFAILPGYPDNVR---TN-EKGEFWV  310 (406)
Q Consensus       241 ~~-~~~~~~--~~~~ngi~l~~d~~~l~v~~t~~~~---i~~~~~~g~~~~~~~~~~~l~g~pd~i~---~d-~~G~lwv  310 (406)
                      +- ..+.+.  -...+++++.||..+-+++.+...+   |..+++.-.. ...+++   .++-.||.   .. .|-++.+
T Consensus       195 ~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as-sP~k~~---~~H~~GilslsWc~~D~~lll  270 (1049)
T KOG0307|consen  195 KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS-SPLKIL---EGHQRGILSLSWCPQDPRLLL  270 (1049)
T ss_pred             CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC-Cchhhh---cccccceeeeccCCCCchhhh
Confidence            22 122211  1335689999987765555554433   3333332110 111111   23333332   12 2224555


Q ss_pred             EEccCCcchhhhhhcChhhhhhhhccCcccee
Q 015463          311 AIHCRRSLYSHLMALYPKIRHFLLKLPISAKT  342 (406)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  342 (406)
                      +......++.+    .+..++++..+|....+
T Consensus       271 SsgkD~~ii~w----N~~tgEvl~~~p~~~nW  298 (1049)
T KOG0307|consen  271 SSGKDNRIICW----NPNTGEVLGELPAQGNW  298 (1049)
T ss_pred             cccCCCCeeEe----cCCCceEeeecCCCCcc
Confidence            55444333222    45567777777775443

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=86.98  E-value=9.2  Score=36.39  Aligned_cols=48  Identities=10%  Similarity=0.114  Sum_probs=32.1

Q ss_pred             eEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          231 RVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       231 ~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                      .+-.++..|.++.....+  .-.|||-..=...+.|+.+..+.|..+++.
T Consensus       341 TikvW~~st~efvRtl~g--HkRGIAClQYr~rlvVSGSSDntIRlwdi~  388 (499)
T KOG0281|consen  341 TIKVWSTSTCEFVRTLNG--HKRGIACLQYRDRLVVSGSSDNTIRLWDIE  388 (499)
T ss_pred             eEEEEeccceeeehhhhc--ccccceehhccCeEEEecCCCceEEEEecc
Confidence            467778877776554433  335676555455678888887888888766

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=86.16  E-value=16  Score=36.57  Aligned_cols=111  Identities=14%  Similarity=0.081  Sum_probs=68.1

Q ss_pred             EEEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccccccccc
Q 015463          135 GLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLC  214 (406)
Q Consensus       135 gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~  214 (406)
                      ...+.++...|+|+.....|-++|......+.-.. ... .......|++.+|-++-|+..+                  
T Consensus       470 SckL~pdgrtLivGGeastlsiWDLAapTprikae-lts-sapaCyALa~spDakvcFsccs------------------  529 (705)
T KOG0639|consen  470 SCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAE-LTS-SAPACYALAISPDAKVCFSCCS------------------  529 (705)
T ss_pred             eeEecCCCceEEeccccceeeeeeccCCCcchhhh-cCC-cchhhhhhhcCCccceeeeecc------------------
Confidence            34455534568887666678888876543222111 111 1123566888899999998754                  


Q ss_pred             ccCCCCCCCcccCCCCeEEEEeCCCCeEEEeccc-CCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          215 SSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       215 ~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                                    +|.|..||..+..+..-..+ -..+..|.+++||..|| +.--.+.|..+++.
T Consensus       530 --------------dGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklW-TGGlDntvRcWDlr  581 (705)
T KOG0639|consen  530 --------------DGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLW-TGGLDNTVRCWDLR  581 (705)
T ss_pred             --------------CCcEEEEEcccceeeecccCCCCCceeEEecCCCceee-cCCCccceeehhhh
Confidence                          47899999886543332222 23467799999998765 43334677777765

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=85.89  E-value=21  Score=33.84  Aligned_cols=144  Identities=12%  Similarity=0.106  Sum_probs=78.2

Q ss_pred             CCcEEEEeCC-CcEEEEeCCCCeEEEcccccC-CcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCC
Q 015463          142 TGDLYIADAY-FGLMKVGPEGGLATSLATEAE-GVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLND  219 (406)
Q Consensus       142 ~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~-~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~  219 (406)
                      +-+||.+++. .-|..+|.-+|+.+.-....+ -.......+|++.+||.-.|+-..                       
T Consensus       122 ~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-----------------------  178 (406)
T KOG2919|consen  122 STNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-----------------------  178 (406)
T ss_pred             ccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-----------------------
Confidence            4567777665 458888887777653222111 112345668999999965554321                       


Q ss_pred             CCCCcccCCCCeEEEEeC-CCCeE-EEe---ccc----CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeee
Q 015463          220 PSPIKITKDTGRVLKYDP-TTKQT-TVL---LRN----LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAF  290 (406)
Q Consensus       220 ~~~~~~~~~~g~l~~~d~-~t~~~-~~~---~~~----~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~  290 (406)
                                ..|..||. ..|+. .++   ..+    ...-..++++|-....+...+..+++-.|.-.+.     +..
T Consensus       179 ----------rcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-----~pl  243 (406)
T KOG2919|consen  179 ----------RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-----RPL  243 (406)
T ss_pred             ----------ceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC-----Cce
Confidence                      23555554 22322 111   111    1112356788876667777777788888875532     122


Q ss_pred             ecCCCCCCce---EECCCCC-EEEEEccCCcchhhhh
Q 015463          291 AILPGYPDNV---RTNEKGE-FWVAIHCRRSLYSHLM  323 (406)
Q Consensus       291 ~~l~g~pd~i---~~d~~G~-lwv~~~~~~~~~~~~~  323 (406)
                      .-+.|.-.||   ..-++|+ ||.+....-.+..+.|
T Consensus       244 ~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDi  280 (406)
T KOG2919|consen  244 QLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDI  280 (406)
T ss_pred             eeecccCCCeeeEEeccCcCeecccccCCCeEEEEee
Confidence            2222334444   4567777 7777665544444433

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=85.52  E-value=14  Score=35.83  Aligned_cols=179  Identities=16%  Similarity=0.235  Sum_probs=98.7

Q ss_pred             ceEEEcCCCCeeEEEecCCEEEEEeCCc--eeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEe
Q 015463           72 ESMAFDPLGRGPYTGVADGRILFWDGLK--WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (406)
Q Consensus        72 e~i~~d~~g~~ly~g~~~g~I~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad  149 (406)
                      -.+.+.++|+.|.+|+..|..-.|+...  ++.+.                     .++ ..-.-++.... +|+-.|..
T Consensus       100 ~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtil---------------------QaH-Ds~Vr~m~ws~-~g~wmiSg  156 (464)
T KOG0284|consen  100 NVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETIL---------------------QAH-DSPVRTMKWSH-NGTWMISG  156 (464)
T ss_pred             eeEEEcCCCceeEeecccccEEEecCceeeHHHHh---------------------hhh-cccceeEEEcc-CCCEEEEc
Confidence            5677889999999999999888887641  11111                     111 12234677777 56554544


Q ss_pred             CCCcEE-EEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCC
Q 015463          150 AYFGLM-KVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKD  228 (406)
Q Consensus       150 ~~~gl~-~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  228 (406)
                      ..+|.. .+++.-..++.+.    ...-..+.++++.++...++|.+.                                
T Consensus       157 D~gG~iKyWqpnmnnVk~~~----ahh~eaIRdlafSpnDskF~t~Sd--------------------------------  200 (464)
T KOG0284|consen  157 DKGGMIKYWQPNMNNVKIIQ----AHHAEAIRDLAFSPNDSKFLTCSD--------------------------------  200 (464)
T ss_pred             CCCceEEecccchhhhHHhh----HhhhhhhheeccCCCCceeEEecC--------------------------------
Confidence            344544 3455433222221    111235778999988888887653                                


Q ss_pred             CCeEEEEeCCCCeEEEeccc-CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCC---CceEECC
Q 015463          229 TGRVLKYDPTTKQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYP---DNVRTNE  304 (406)
Q Consensus       229 ~g~l~~~d~~t~~~~~~~~~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~p---d~i~~d~  304 (406)
                      +|.+..+|..-.+-+..+.+ ...+..+++.|.. .++++....+-|..++.   +.++  .+..+.+.-   -.+.+.+
T Consensus       201 Dg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDp---rSg~--cl~tlh~HKntVl~~~f~~  274 (464)
T KOG0284|consen  201 DGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDP---RSGS--CLATLHGHKNTVLAVKFNP  274 (464)
T ss_pred             CCeEEEEeccCCchhheeccCCCCcceeccCCcc-ceeEEccCCceeEeecC---CCcc--hhhhhhhccceEEEEEEcC
Confidence            46777777654433333332 3445678888855 46566554454444443   3332  222232322   2355678


Q ss_pred             CCCEEEEEccC
Q 015463          305 KGEFWVAIHCR  315 (406)
Q Consensus       305 ~G~lwv~~~~~  315 (406)
                      +|++.++....
T Consensus       275 n~N~Llt~skD  285 (464)
T KOG0284|consen  275 NGNWLLTGSKD  285 (464)
T ss_pred             CCCeeEEccCC
Confidence            88766665443

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.51  E-value=21  Score=34.63  Aligned_cols=71  Identities=23%  Similarity=0.347  Sum_probs=43.0

Q ss_pred             cccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEeccc--CCCcc
Q 015463          176 LRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRN--LQFPN  253 (406)
Q Consensus       176 ~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~--~~~~n  253 (406)
                      ++.+.+++++.||++..-.+                                -+|.|..|+..+-+.-.+...  ..+..
T Consensus       281 ~~siSsl~VS~dGkf~AlGT--------------------------------~dGsVai~~~~~lq~~~~vk~aH~~~VT  328 (398)
T KOG0771|consen  281 FKSISSLAVSDDGKFLALGT--------------------------------MDGSVAIYDAKSLQRLQYVKEAHLGFVT  328 (398)
T ss_pred             cCcceeEEEcCCCcEEEEec--------------------------------cCCcEEEEEeceeeeeEeehhhheeeee
Confidence            45688999999998655332                                147788888765554444322  22557


Q ss_pred             eEEEecCCCEEEEEeCCCCeEEEEEe
Q 015463          254 GLSLSKDKSFFVFCEGSVGRLHKYWL  279 (406)
Q Consensus       254 gi~l~~d~~~l~v~~t~~~~i~~~~~  279 (406)
                      +++++||.+.+. +-....+.....+
T Consensus       329 ~ltF~Pdsr~~~-svSs~~~~~v~~l  353 (398)
T KOG0771|consen  329 GLTFSPDSRYLA-SVSSDNEAAVTKL  353 (398)
T ss_pred             eEEEcCCcCccc-ccccCCceeEEEE
Confidence            899999987542 2233344444443

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=85.16  E-value=9.4  Score=34.46  Aligned_cols=168  Identities=15%  Similarity=0.031  Sum_probs=75.5

Q ss_pred             ccccceeccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCc-CCcc
Q 015463           57 LQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHI-CGRP  133 (406)
Q Consensus        57 l~~~~~~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p  133 (406)
                      +..+..+-. ...+=..|+..++|. +|.-. ++.+++..+.  .........    .            .+... =++=
T Consensus        23 ~~~a~~iG~-gw~~~~~i~~~P~g~-lY~I~-~~~lY~~~~~~~~~~~~~~~~----~------------~Ig~g~W~~F   83 (229)
T PF14517_consen   23 SDRAITIGS-GWNNFRDIAAGPNGR-LYAIR-NDGLYRGSPSSSGGNTWDSGS----K------------QIGDGGWNSF   83 (229)
T ss_dssp             HHHSEEEES-S-TT-SEEEE-TTS--EEEEE-TTEEEEES---STT--HHHH-----E------------EEE-S-GGG-
T ss_pred             cchhhhcCc-cccccceEEEcCCce-EEEEE-CCceEEecCCccCcccccccC----c------------ccccCcccce
Confidence            445555544 245566788888887 56544 4578877322  100000000    0            00000 0122


Q ss_pred             eEEEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEccc----ccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccc
Q 015463          134 LGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLAT----EAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENI  209 (406)
Q Consensus       134 ~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~----~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~  209 (406)
                      ..|.+++ +|.||..+....|++..+.+..-.....    ...+.--+....|..+++|.||.-+..             
T Consensus        84 ~~i~~d~-~G~LYaV~~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~GvLY~i~~d-------------  149 (229)
T PF14517_consen   84 KFIFFDP-TGVLYAVTPDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGVLYAITPD-------------  149 (229)
T ss_dssp             SEEEE-T-TS-EEEEETT-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS-EEEEETT-------------
T ss_pred             eEEEecC-CccEEEeccccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCccEEEEcCC-------------
Confidence            3688898 8999988877678888764332222211    111122334566888999999988753             


Q ss_pred             cccccccCCCCCCCcccCCCCeEEEE-eCCCCeE-----EEe--cccCCCcceEEEecCCCEEEEEeCCCCeEEEEEe
Q 015463          210 PLQLCSSLNDPSPIKITKDTGRVLKY-DPTTKQT-----TVL--LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWL  279 (406)
Q Consensus       210 ~~~~~~e~~~~~~~~~~~~~g~l~~~-d~~t~~~-----~~~--~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~  279 (406)
                                          |++++. .|..+.-     ..+  ..+-....-|..++++. ||.+ ..++.|+|+..
T Consensus       150 --------------------g~~~~~~~p~~~~~~W~~~s~~v~~~gw~~~~~i~~~~~g~-L~~V-~~~G~lyr~~~  205 (229)
T PF14517_consen  150 --------------------GRLYRRYRPDGGSDRWLSGSGLVGGGGWDSFHFIFFSPDGN-LWAV-KSNGKLYRGRP  205 (229)
T ss_dssp             --------------------E-EEEE---SSTT--HHHH-EEEESSSGGGEEEEEE-TTS--EEEE--ETTEEEEES-
T ss_pred             --------------------CceEEeCCCCCCCCccccccceeccCCcccceEEeeCCCCc-EEEE-ecCCEEeccCC
Confidence                                567776 4443211     111  12222344577778775 5555 34678887653

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=85.14  E-value=37  Score=32.66  Aligned_cols=84  Identities=13%  Similarity=0.160  Sum_probs=45.0

Q ss_pred             CeEEEEeCCCCeEEEeccc-CCCcceE-EEecCCCEEEEE---eCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECC
Q 015463          230 GRVLKYDPTTKQTTVLLRN-LQFPNGL-SLSKDKSFFVFC---EGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNE  304 (406)
Q Consensus       230 g~l~~~d~~t~~~~~~~~~-~~~~ngi-~l~~d~~~l~v~---~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~  304 (406)
                      ..+|.||.++-+.-.-.+. -..+.|+ |+++.....|++   .++.+.|..|+...-  .....+.-=.|--.-+++++
T Consensus       106 e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl--~~v~~I~aH~~~lAalafs~  183 (391)
T KOG2110|consen  106 ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL--QPVNTINAHKGPLAALAFSP  183 (391)
T ss_pred             ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc--eeeeEEEecCCceeEEEECC
Confidence            4599999976543222222 2456654 577766544443   334577888886532  11111111112234567889


Q ss_pred             CCCEEEEEccC
Q 015463          305 KGEFWVAIHCR  315 (406)
Q Consensus       305 ~G~lwv~~~~~  315 (406)
                      +|++.++....
T Consensus       184 ~G~llATASeK  194 (391)
T KOG2110|consen  184 DGTLLATASEK  194 (391)
T ss_pred             CCCEEEEeccC
Confidence            99877665433

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=85.06  E-value=45  Score=33.51  Aligned_cols=83  Identities=14%  Similarity=0.139  Sum_probs=50.9

Q ss_pred             CCeEEEEeCCCCeEEEe-cccC-CCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCCC
Q 015463          229 TGRVLKYDPTTKQTTVL-LRNL-QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKG  306 (406)
Q Consensus       229 ~g~l~~~d~~t~~~~~~-~~~~-~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G  306 (406)
                      .|.|-.||..+.....- .... .-..||+++|.+..|+++--...+|+.|+....+... .+..+-|  -..+++.++|
T Consensus       186 ~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~-~l~y~~P--lstvaf~~~G  262 (673)
T KOG4378|consen  186 KGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD-RLTYSHP--LSTVAFSECG  262 (673)
T ss_pred             CCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc-eeeecCC--cceeeecCCc
Confidence            57788888764332211 1222 2346999999999999987777899999976322222 2211111  2356778888


Q ss_pred             CEEEEEcc
Q 015463          307 EFWVAIHC  314 (406)
Q Consensus       307 ~lwv~~~~  314 (406)
                      .+.++...
T Consensus       263 ~~L~aG~s  270 (673)
T KOG4378|consen  263 TYLCAGNS  270 (673)
T ss_pred             eEEEeecC
Confidence            86666543

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=85.03  E-value=39  Score=33.87  Aligned_cols=53  Identities=17%  Similarity=0.191  Sum_probs=35.4

Q ss_pred             CCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCC
Q 015463          229 TGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE  282 (406)
Q Consensus       229 ~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~  282 (406)
                      +.+|+.||...++...-+..-.--..++++++|-+ +++.+.+++|+.|++.+.
T Consensus       230 Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~-L~aG~s~G~~i~YD~R~~  282 (673)
T KOG4378|consen  230 DKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTY-LCAGNSKGELIAYDMRST  282 (673)
T ss_pred             cceEEEeecccccccceeeecCCcceeeecCCceE-EEeecCCceEEEEecccC
Confidence            35799999875543221111122246899998864 567788999999999864

>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]

Probab=85.03  E-value=31  Score=31.67  Aligned_cols=96  Identities=17%  Similarity=0.266  Sum_probs=52.5

Q ss_pred             cEEEEeCCCCeEEEcccc--cCCcccccccceEEcC--C-CCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463          153 GLMKVGPEGGLATSLATE--AEGVPLRFTNDLDIDD--E-GNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK  227 (406)
Q Consensus       153 gl~~~d~~~~~~~~l~~~--~~~~~~~~~~~l~~d~--d-G~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  227 (406)
                      -+|.+|++.+.++.+...  ......+.+.+++..+  . |.+|+-...                               
T Consensus       127 ~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~-------------------------------  175 (364)
T COG4247         127 VFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNR-------------------------------  175 (364)
T ss_pred             EEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEec-------------------------------
Confidence            378899988777766543  2233455677776543  2 656654321                               


Q ss_pred             CCCeEEEE---eCCCCeEE-EecccCC---CcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          228 DTGRVLKY---DPTTKQTT-VLLRNLQ---FPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       228 ~~g~l~~~---d~~t~~~~-~~~~~~~---~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                      ..|-+-.|   |...|++. .+.+.+.   ...|+..+..-.+||++|. .-.||+|..+
T Consensus       176 ~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~tQTEG~VaDdEtG~LYIaeE-dvaiWK~~Ae  234 (364)
T COG4247         176 RQGDIAQYKLIDQGNGKVGTKLVRQFKIPTQTEGMVADDETGFLYIAEE-DVAIWKYEAE  234 (364)
T ss_pred             CCCceeEEEEEecCCceEcceeeEeeecCCcccceeeccccceEEEeec-cceeeecccC
Confidence            11222222   22223221 1122222   3457766666667999886 4789999876

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=84.96  E-value=13  Score=36.10  Aligned_cols=34  Identities=18%  Similarity=0.265  Sum_probs=26.0

Q ss_pred             cCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC
Q 015463           65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL   98 (406)
Q Consensus        65 ~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~   98 (406)
                      -+.-.-+-.+++.++++.+.+++.+..++.||..
T Consensus       120 r~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~  153 (434)
T KOG1009|consen  120 RGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVH  153 (434)
T ss_pred             cccccchhhhhccCCCceeeeeeccceEEEEEec
Confidence            3344556778898999878888888888888866

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=84.93  E-value=34  Score=32.08  Aligned_cols=80  Identities=14%  Similarity=0.169  Sum_probs=52.8

Q ss_pred             cceEEEcC-CCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463           71 PESMAFDP-LGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (406)
Q Consensus        71 pe~i~~d~-~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va  148 (406)
                      ..+++++| ..+++-+|++||.|..|+-. .-.... .                  ......+.++.+++..+...++.+
T Consensus        30 IS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-k------------------a~~~~~~PvL~v~WsddgskVf~g   90 (347)
T KOG0647|consen   30 ISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-K------------------AQQSHDGPVLDVCWSDDGSKVFSG   90 (347)
T ss_pred             hheeEeccccCceEEecccCCceEEEEEecCCcccc-h------------------hhhccCCCeEEEEEccCCceEEee
Confidence            35677777 45545589999998888643 100000 0                  112224557899998744457888


Q ss_pred             eCCCcEEEEeCCCCeEEEccc
Q 015463          149 DAYFGLMKVGPEGGLATSLAT  169 (406)
Q Consensus       149 d~~~gl~~~d~~~~~~~~l~~  169 (406)
                      ...+.+-.+|..+++...+..
T Consensus        91 ~~Dk~~k~wDL~S~Q~~~v~~  111 (347)
T KOG0647|consen   91 GCDKQAKLWDLASGQVSQVAA  111 (347)
T ss_pred             ccCCceEEEEccCCCeeeeee
Confidence            888889999999998776643

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=84.92  E-value=34  Score=32.07  Aligned_cols=148  Identities=17%  Similarity=0.191  Sum_probs=84.3

Q ss_pred             cCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcc-eEEEEeCCCCcEEE
Q 015463           69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRP-LGLRFDKKTGDLYI  147 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~gi~~d~~~g~L~V  147 (406)
                      .+-.++-+++.++.|.++++||.+..++..... .                     ..+...+.| +..+|.. +..+|+
T Consensus        14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~-l---------------------~~~~~~~~plL~c~F~d-~~~~~~   70 (323)
T KOG1036|consen   14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS-L---------------------KLKFKHGAPLLDCAFAD-ESTIVT   70 (323)
T ss_pred             hceeeEEEcCcCCcEEEEeccCcEEEEeccchh-h---------------------hhheecCCceeeeeccC-CceEEE
Confidence            345677777766668999999998888765110 0                     000011223 4667775 678999


Q ss_pred             EeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463          148 ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK  227 (406)
Q Consensus       148 ad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  227 (406)
                      ++..+.|.++|..++....+.+...+     +.+|.....-+..++.+        |                       
T Consensus        71 G~~dg~vr~~Dln~~~~~~igth~~~-----i~ci~~~~~~~~vIsgs--------W-----------------------  114 (323)
T KOG1036|consen   71 GGLDGQVRRYDLNTGNEDQIGTHDEG-----IRCIEYSYEVGCVISGS--------W-----------------------  114 (323)
T ss_pred             eccCceEEEEEecCCcceeeccCCCc-----eEEEEeeccCCeEEEcc--------c-----------------------
Confidence            99888899999998876555433221     23333333222333332        1                       


Q ss_pred             CCCeEEEEeCCCCeEEEecccCCCcc-eEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          228 DTGRVLKYDPTTKQTTVLLRNLQFPN-GLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       228 ~~g~l~~~d~~t~~~~~~~~~~~~~n-gi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                       ++.+-.+|+....   .......++ --+++-.++.|+|. +...++..|++.
T Consensus       115 -D~~ik~wD~R~~~---~~~~~d~~kkVy~~~v~g~~LvVg-~~~r~v~iyDLR  163 (323)
T KOG1036|consen  115 -DKTIKFWDPRNKV---VVGTFDQGKKVYCMDVSGNRLVVG-TSDRKVLIYDLR  163 (323)
T ss_pred             -CccEEEEeccccc---cccccccCceEEEEeccCCEEEEe-ecCceEEEEEcc
Confidence             3567777876421   111111222 12344456666664 446788888876

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=84.86  E-value=10  Score=37.87  Aligned_cols=36  Identities=22%  Similarity=0.410  Sum_probs=31.3

Q ss_pred             eccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC
Q 015463           63 KFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL   98 (406)
Q Consensus        63 ~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~   98 (406)
                      -+.|.-.|..+|.+.++|..||+|.-|..+..||..
T Consensus       546 qfqGhtDGascIdis~dGtklWTGGlDntvRcWDlr  581 (705)
T KOG0639|consen  546 QFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLR  581 (705)
T ss_pred             cccCCCCCceeEEecCCCceeecCCCccceeehhhh
Confidence            345666788999999999999999999999999876

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=84.75  E-value=4.5  Score=25.23  Aligned_cols=30  Identities=20%  Similarity=0.295  Sum_probs=20.2

Q ss_pred             CCeEEEEeCCCCeEEEecccCCCcceEEEe
Q 015463          229 TGRVLKYDPTTKQTTVLLRNLQFPNGLSLS  258 (406)
Q Consensus       229 ~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~  258 (406)
                      .+.|..+|+.+++...-..-...|.+++++
T Consensus        13 ~~~v~~id~~~~~~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276        13 SNTVSVIDTATNKVIATIPVGGYPFGVAVS   42 (42)
T ss_pred             CCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence            367999999887665444444667777653

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=84.71  E-value=43  Score=33.02  Aligned_cols=119  Identities=17%  Similarity=0.138  Sum_probs=59.9

Q ss_pred             EEEEeCCCCc-EEEE-eCCC----cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCE-EEEeCCCchhhhccccc
Q 015463          135 GLRFDKKTGD-LYIA-DAYF----GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV-YFTDSSTNYQRRQMQKE  207 (406)
Q Consensus       135 gi~~d~~~g~-L~Va-d~~~----gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~l-y~t~~~~~~~~~~~~~~  207 (406)
                      ++.+++ +|+ +.++ +..+    .|+.+|.++|+...  .....   .....+...+||+. |.+...... +..    
T Consensus       128 ~~~~Sp-dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~--d~i~~---~~~~~~~W~~d~~~~~y~~~~~~~-~~~----  196 (414)
T PF02897_consen  128 GFSVSP-DGKRLAYSLSDGGSEWYTLRVFDLETGKFLP--DGIEN---PKFSSVSWSDDGKGFFYTRFDEDQ-RTS----  196 (414)
T ss_dssp             EEEETT-TSSEEEEEEEETTSSEEEEEEEETTTTEEEE--EEEEE---EESEEEEECTTSSEEEEEECSTTT-SS-----
T ss_pred             eeeECC-CCCEEEEEecCCCCceEEEEEEECCCCcCcC--Ccccc---cccceEEEeCCCCEEEEEEeCccc-ccc----
Confidence            466777 555 3333 2222    38899998885432  22111   11223788888754 344322100 000    


Q ss_pred             cccccccccCCCCCCCcccCCCCeEEEEeCCCCeEE--EecccCCC---cceEEEecCCCEEEEEeCCC---CeEEEEEe
Q 015463          208 NIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTT--VLLRNLQF---PNGLSLSKDKSFFVFCEGSV---GRLHKYWL  279 (406)
Q Consensus       208 ~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~--~~~~~~~~---~ngi~l~~d~~~l~v~~t~~---~~i~~~~~  279 (406)
                              +         ....-.|+++...+...+  .+.+....   .-++..++|++++++.....   ..++.+++
T Consensus       197 --------~---------~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~  259 (414)
T PF02897_consen  197 --------D---------SGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDL  259 (414)
T ss_dssp             --------C---------CGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEEC
T ss_pred             --------c---------CCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEec
Confidence                    0         001235888887766433  33322222   33678899999988764432   45777776


Q ss_pred             eC
Q 015463          280 IG  281 (406)
Q Consensus       280 ~g  281 (406)
                      ..
T Consensus       260 ~~  261 (414)
T PF02897_consen  260 DD  261 (414)
T ss_dssp             CC
T ss_pred             cc
Confidence            64

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=84.09  E-value=25  Score=32.86  Aligned_cols=116  Identities=15%  Similarity=0.148  Sum_probs=74.4

Q ss_pred             cCCcceEEEEeCCCCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccc
Q 015463          129 ICGRPLGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKE  207 (406)
Q Consensus       129 ~~~~p~gi~~d~~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~  207 (406)
                      ..|..+-+.|+| +|..++.... +.|+.++..+. .+.+... .+ -...+.++...+||+..++.+.           
T Consensus        46 h~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gd-ceN~~~l-kg-HsgAVM~l~~~~d~s~i~S~gt-----------  110 (338)
T KOG0265|consen   46 HKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGD-CENFWVL-KG-HSGAVMELHGMRDGSHILSCGT-----------  110 (338)
T ss_pred             CcceEEEEEECC-CCCeEeecCCcceEEEEecccc-ccceeee-cc-ccceeEeeeeccCCCEEEEecC-----------
Confidence            356678889999 8887776544 56777775433 2222111 01 1134678888899988887653           


Q ss_pred             cccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec-ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          208 NIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       208 ~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                                           +-++..+|.++|+...-. ..-.+.|.++-+.-|-.++.+....+.+..++..
T Consensus       111 ---------------------Dk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R  163 (338)
T KOG0265|consen  111 ---------------------DKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR  163 (338)
T ss_pred             ---------------------CceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeec
Confidence                                 357999999999765433 2334556666555566677776666777777765

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=83.93  E-value=6.4  Score=24.50  Aligned_cols=42  Identities=14%  Similarity=0.100  Sum_probs=27.3

Q ss_pred             cCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEEC
Q 015463          259 KDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTN  303 (406)
Q Consensus       259 ~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d  303 (406)
                      ||++.+|+++...+.|..++...   +...........|.+++++
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~---~~~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTAT---NKVIATIPVGGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCC---CeEEEEEECCCCCceEEeC
Confidence            57889999998889999988642   2211122334457777653

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PHA03098 kelch-like protein; Provisional

Probab=83.82  E-value=55  Score=33.58  Aligned_cols=77  Identities=14%  Similarity=0.119  Sum_probs=42.5

Q ss_pred             CCcEEEEeCC-------CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccccccccc
Q 015463          142 TGDLYIADAY-------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLC  214 (406)
Q Consensus       142 ~g~L~Vad~~-------~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~  214 (406)
                      ++.+||....       +.+.++|+.+++.+.+......  . .-.. ++.-+|.||+.........             
T Consensus       389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~--r-~~~~-~~~~~~~iyv~GG~~~~~~-------------  451 (534)
T PHA03098        389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPIS--H-YGGC-AIYHDGKIYVIGGISYIDN-------------  451 (534)
T ss_pred             CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcc--c-cCce-EEEECCEEEEECCccCCCC-------------
Confidence            6788886431       2488999998877654322111  1 1112 2233678888653210000             


Q ss_pred             ccCCCCCCCcccCCCCeEEEEeCCCCeEEEec
Q 015463          215 SSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL  246 (406)
Q Consensus       215 ~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~  246 (406)
                                 ......+++||+.+++++.+.
T Consensus       452 -----------~~~~~~v~~yd~~~~~W~~~~  472 (534)
T PHA03098        452 -----------IKVYNIVESYNPVTNKWTELS  472 (534)
T ss_pred             -----------CcccceEEEecCCCCceeeCC
Confidence                       001134999999998887654

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=83.61  E-value=40  Score=32.47  Aligned_cols=111  Identities=18%  Similarity=0.206  Sum_probs=62.5

Q ss_pred             ceEE-EEeCCCCcEEEEeCC----CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccc
Q 015463          133 PLGL-RFDKKTGDLYIADAY----FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKE  207 (406)
Q Consensus       133 p~gi-~~d~~~g~L~Vad~~----~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~  207 (406)
                      |.|+ ++.+..++-|+|-..    +-|+.+|..+=+-........    ..+..|+++++|++..|.+.           
T Consensus       129 ~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~----~~lAalafs~~G~llATASe-----------  193 (391)
T KOG2110|consen  129 PKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHK----GPLAALAFSPDGTLLATASE-----------  193 (391)
T ss_pred             ccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecC----CceeEEEECCCCCEEEEecc-----------
Confidence            4443 455534455555332    347777765322111111111    23567999999999888754           


Q ss_pred             cccccccccCCCCCCCcccCCCCeEEE-EeCCCCe-EEEecccCCCc--ceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          208 NIPLQLCSSLNDPSPIKITKDTGRVLK-YDPTTKQ-TTVLLRNLQFP--NGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       208 ~~~~~~~~e~~~~~~~~~~~~~g~l~~-~d~~t~~-~~~~~~~~~~~--ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                                           .|.|.| |...+|+ +..+..+....  ..+++++|+++|-++ .....|+.+.++
T Consensus       194 ---------------------KGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~s-S~TeTVHiFKL~  248 (391)
T KOG2110|consen  194 ---------------------KGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAAS-SNTETVHIFKLE  248 (391)
T ss_pred             ---------------------CceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEe-cCCCeEEEEEec
Confidence                                 355544 3434443 34444444322  368899999977665 445788888776

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=83.47  E-value=49  Score=32.74  Aligned_cols=119  Identities=16%  Similarity=0.153  Sum_probs=61.9

Q ss_pred             CCcceEEEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccccCC-----cccc---cccceEEcCCCCEEEEeCCCchhh
Q 015463          130 CGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEG-----VPLR---FTNDLDIDDEGNVYFTDSSTNYQR  201 (406)
Q Consensus       130 ~~~p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~-----~~~~---~~~~l~~d~dG~ly~t~~~~~~~~  201 (406)
                      ++.+-.++|-. +..+..+...+.|+.++....+.........+     .+.+   .+++|++-+.-++..+.+.+    
T Consensus       327 ~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~----  401 (479)
T KOG0299|consen  327 EGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWS----  401 (479)
T ss_pred             CCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCC----
Confidence            34556666664 45566665555577777654432111111111     1111   56667766655666654421    


Q ss_pred             hccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec--ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEe
Q 015463          202 RQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL--RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWL  279 (406)
Q Consensus       202 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~--~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~  279 (406)
                                                +.=+|+.....-.++..+.  .-..+.|.++++.+++++++.---..|+-|++.
T Consensus       402 --------------------------G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~  455 (479)
T KOG0299|consen  402 --------------------------GCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWC  455 (479)
T ss_pred             --------------------------CceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEecccccccceeeE
Confidence                                      1123454444322333331  122456899999999988776444456666654

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=83.37  E-value=40  Score=31.67  Aligned_cols=107  Identities=16%  Similarity=0.151  Sum_probs=62.6

Q ss_pred             eEEEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCccc-ccccceEEcCCCCEEEEeCCCchhhhcccccccccc
Q 015463          134 LGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPL-RFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQ  212 (406)
Q Consensus       134 ~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~-~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~  212 (406)
                      ..+.+.  +...|+++...||..+|..+-...++....   +. ....++.+. -.-.|+++..                
T Consensus        90 ~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~l---nt~gyaygv~vs-Gn~aYVadld----------------  147 (370)
T COG5276          90 ADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFL---NTDGYAYGVYVS-GNYAYVADLD----------------  147 (370)
T ss_pred             heeEec--ccEEEEEcCCCceEEEeccCCCCcceeccc---cCCceEEEEEec-CCEEEEeecc----------------
Confidence            345555  568999999999999997764322221110   11 223334443 1257888743                


Q ss_pred             ccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCc----ceEEEecCCCEEEEEeCCCCeEEEEEeeCC
Q 015463          213 LCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFP----NGLSLSKDKSFFVFCEGSVGRLHKYWLIGE  282 (406)
Q Consensus       213 ~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~----ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~  282 (406)
                                       .+++.+|..+-+.-++......+    .-+++|  |++-|++.. .+++...++..+
T Consensus       148 -----------------dgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~-d~GL~ivDVSnp  201 (370)
T COG5276         148 -----------------DGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWR-DGGLTIVDVSNP  201 (370)
T ss_pred             -----------------CcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEe-CCCeEEEEccCC
Confidence                             34777877655444443333333    345665  777888854 578888888754

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=83.28  E-value=51  Score=32.80  Aligned_cols=61  Identities=20%  Similarity=0.269  Sum_probs=35.1

Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcc--eeeee---------------cCCCCCCceEECCCCC-EEEEEc
Q 015463          253 NGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGN--LEAFA---------------ILPGYPDNVRTNEKGE-FWVAIH  313 (406)
Q Consensus       253 ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~--~~~~~---------------~l~g~pd~i~~d~~G~-lwv~~~  313 (406)
                      .-|.+|-|.++||++....+.|..|++..+...+  .+++.               .+.|-|.-+.++-||+ +||++.
T Consensus       315 tDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  315 TDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             --EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred             EeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence            4678999999999999999999999998753221  11221               1345577888888997 999874

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=82.91  E-value=31  Score=32.75  Aligned_cols=160  Identities=16%  Similarity=0.180  Sum_probs=81.8

Q ss_pred             cccCcceEEEcCCCCeeEEEecCCEEEEEeCC---ce-eEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCC
Q 015463           67 QIQGPESMAFDPLGRGPYTGVADGRILFWDGL---KW-TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT  142 (406)
Q Consensus        67 ~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~  142 (406)
                      .+.+..|+++.+||..||+|- +.-|..++..   .. ..++....                ..+...+-...+++.|.+
T Consensus       157 e~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~----------------~k~gq~giisc~a~sP~~  219 (406)
T KOG2919|consen  157 EYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTK----------------GKFGQKGIISCFAFSPMD  219 (406)
T ss_pred             hhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhc----------------ccccccceeeeeeccCCC
Confidence            567889999999999888875 3457667652   11 11110000                000111223346677633


Q ss_pred             -CcEEEEeCCC--cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCC
Q 015463          143 -GDLYIADAYF--GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLND  219 (406)
Q Consensus       143 -g~L~Vad~~~--gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~  219 (406)
                       +.+-++...+  ||+.-+.. +-...+..     ....+..|...++|+-+|+.+                        
T Consensus       220 ~~~~a~gsY~q~~giy~~~~~-~pl~llgg-----h~gGvThL~~~edGn~lfsGa------------------------  269 (406)
T KOG2919|consen  220 SKTLAVGSYGQRVGIYNDDGR-RPLQLLGG-----HGGGVTHLQWCEDGNKLFSGA------------------------  269 (406)
T ss_pred             CcceeeecccceeeeEecCCC-Cceeeecc-----cCCCeeeEEeccCcCeecccc------------------------
Confidence             3556666554  55555432 11222221     123567888899997555432                        


Q ss_pred             CCCCcccCCCCeEEEEeCCCCeEEEe-c-ccCCCcc-eE--EEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463          220 PSPIKITKDTGRVLKYDPTTKQTTVL-L-RNLQFPN-GL--SLSKDKSFFVFCEGSVGRLHKYWLIG  281 (406)
Q Consensus       220 ~~~~~~~~~~g~l~~~d~~t~~~~~~-~-~~~~~~n-gi--~l~~d~~~l~v~~t~~~~i~~~~~~g  281 (406)
                             +..-.|+++|...-.--++ + ......| -|  .++|++++| .+....+.|.++++++
T Consensus       270 -------Rk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~L-asG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  270 -------RKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEIL-ASGDTDGSVRVWDLKD  328 (406)
T ss_pred             -------cCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCcee-eccCCCccEEEEecCC
Confidence                   1134588888752211111 1 1111122 23  345667654 5554567888888764

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=82.90  E-value=47  Score=32.48  Aligned_cols=87  Identities=18%  Similarity=0.121  Sum_probs=46.6

Q ss_pred             CeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCC-----CceEECC
Q 015463          230 GRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYP-----DNVRTNE  304 (406)
Q Consensus       230 g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~p-----d~i~~d~  304 (406)
                      +.|-.||..+.....-.........+.++.++..++.+ +-...+..+++.+..  -...|. -+|+-     .-+.+++
T Consensus       322 kkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLss-sRDdtl~viDlRt~e--I~~~~s-A~g~k~asDwtrvvfSp  397 (459)
T KOG0288|consen  322 KKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSS-SRDDTLKVIDLRTKE--IRQTFS-AEGFKCASDWTRVVFSP  397 (459)
T ss_pred             cceEEEeccCCceeeEeecCcceeeEeeccCCeEEeee-cCCCceeeeeccccc--EEEEee-ccccccccccceeEECC
Confidence            45777775555444333333345567788888887776 445677777765321  111221 12221     1245677


Q ss_pred             CCCEEEEEccCCcchh
Q 015463          305 KGEFWVAIHCRRSLYS  320 (406)
Q Consensus       305 ~G~lwv~~~~~~~~~~  320 (406)
                      +|.+-.+....+.++.
T Consensus       398 d~~YvaAGS~dgsv~i  413 (459)
T KOG0288|consen  398 DGSYVAAGSADGSVYI  413 (459)
T ss_pred             CCceeeeccCCCcEEE
Confidence            7776555554444443

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=82.40  E-value=3.8  Score=25.57  Aligned_cols=36  Identities=14%  Similarity=-0.037  Sum_probs=27.1

Q ss_pred             eccCcccCcceEEEcCCCC-eeEEEecCCEEEEEeCC
Q 015463           63 KFLNQIQGPESMAFDPLGR-GPYTGVADGRILFWDGL   98 (406)
Q Consensus        63 ~~~~~~~gpe~i~~d~~g~-~ly~g~~~g~I~~~~~~   98 (406)
                      +...++..|.++++|+.++ ++|+....+.|.+.+.+
T Consensus         3 ~~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~   39 (43)
T smart00135        3 LLSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLD   39 (43)
T ss_pred             EEECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCC
Confidence            4455788999999998755 56778877888777643

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=82.27  E-value=68  Score=33.52  Aligned_cols=58  Identities=16%  Similarity=0.147  Sum_probs=39.9

Q ss_pred             ceEEEEeCCCCcEEEEeCCCcEEEEeCCCCe-EEEcccccCCcccccccceEEcCCCCEEEEeCC
Q 015463          133 PLGLRFDKKTGDLYIADAYFGLMKVGPEGGL-ATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSS  196 (406)
Q Consensus       133 p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~-~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~  196 (406)
                      .+.++|.| +|.-.+-.+++.++.+|+..|. +.++...     ...++.++..+||..+.+.++
T Consensus        15 i~d~afkP-DGsqL~lAAg~rlliyD~ndG~llqtLKgH-----KDtVycVAys~dGkrFASG~a   73 (1081)
T KOG1538|consen   15 INDIAFKP-DGTQLILAAGSRLLVYDTSDGTLLQPLKGH-----KDTVYCVAYAKDGKRFASGSA   73 (1081)
T ss_pred             hheeEECC-CCceEEEecCCEEEEEeCCCcccccccccc-----cceEEEEEEccCCceeccCCC
Confidence            56789999 6654444467899999987663 2333211     235788999999999887654

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=82.15  E-value=37  Score=30.42  Aligned_cols=29  Identities=7%  Similarity=0.068  Sum_probs=22.1

Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEEeeCC
Q 015463          253 NGLSLSKDKSFFVFCEGSVGRLHKYWLIGE  282 (406)
Q Consensus       253 ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~  282 (406)
                      ..++++|.|+ |+++.........|++.|.
T Consensus       235 aav~vdpsgr-ll~sg~~dssc~lydirg~  263 (350)
T KOG0641|consen  235 AAVAVDPSGR-LLASGHADSSCMLYDIRGG  263 (350)
T ss_pred             EEEEECCCcc-eeeeccCCCceEEEEeeCC
Confidence            3578888886 6677776778889998864

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=82.08  E-value=4.3  Score=25.93  Aligned_cols=39  Identities=10%  Similarity=0.081  Sum_probs=28.5

Q ss_pred             EEEEEeCCCC-eEEEEEeeCCCCcceeeeecCCCCCCceEEC
Q 015463          263 FFVFCEGSVG-RLHKYWLIGEKAGNLEAFAILPGYPDNVRTN  303 (406)
Q Consensus       263 ~l~v~~t~~~-~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d  303 (406)
                      .+||++.... .|.+.+++|..  ...++.+.-..|.+|++|
T Consensus         2 ~iYWtD~~~~~~I~~a~~dGs~--~~~vi~~~l~~P~giaVD   41 (42)
T PF00058_consen    2 KIYWTDWSQDPSIERANLDGSN--RRTVISDDLQHPEGIAVD   41 (42)
T ss_dssp             EEEEEETTTTEEEEEEETTSTS--EEEEEESSTSSEEEEEEE
T ss_pred             EEEEEECCCCcEEEEEECCCCC--eEEEEECCCCCcCEEEEC
Confidence            5899999999 99999988743  333444444569999887

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=82.02  E-value=34  Score=34.01  Aligned_cols=44  Identities=18%  Similarity=0.261  Sum_probs=32.5

Q ss_pred             ccccccceeccCcc--cCcceEEEcCCCCeeEEEecCCEEEEEeCC
Q 015463           55 NLLQNSEIKFLNQI--QGPESMAFDPLGRGPYTGVADGRILFWDGL   98 (406)
Q Consensus        55 ~~l~~~~~~~~~~~--~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~   98 (406)
                      -.+..++.-+.-.+  +||-.+-...+|+.+.+|...|.|.-+|..
T Consensus       114 Vdi~sa~k~f~L~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~  159 (545)
T KOG1272|consen  114 VDIASATKHFDLSLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWV  159 (545)
T ss_pred             ccHHhHHhhccccccccCCeeeeecCCccEEEecCCccceeeeecc
Confidence            33444444443333  799999999999989999999999888865

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=81.90  E-value=32  Score=31.31  Aligned_cols=108  Identities=17%  Similarity=0.266  Sum_probs=63.9

Q ss_pred             ceEEEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEE-cCCCCEEEEeCCCchhhhccccccccc
Q 015463          133 PLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDI-DDEGNVYFTDSSTNYQRRQMQKENIPL  211 (406)
Q Consensus       133 p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~-d~dG~ly~t~~~~~~~~~~~~~~~~~~  211 (406)
                      .+.|-+||..+.++.|..+.-++.+|.++|+++......    -.++..++- .+++.|.-                   
T Consensus       117 INam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGH----tDYvH~vv~R~~~~qils-------------------  173 (325)
T KOG0649|consen  117 INAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGH----TDYVHSVVGRNANGQILS-------------------  173 (325)
T ss_pred             cceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCC----cceeeeeeecccCcceee-------------------
Confidence            467889986788888875566999999999887543221    123444443 33444433                   


Q ss_pred             cccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCc------ce---EEEecCCCEEEEEeCCCCeEEEEEe
Q 015463          212 QLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFP------NG---LSLSKDKSFFVFCEGSVGRLHKYWL  279 (406)
Q Consensus       212 ~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~------ng---i~l~~d~~~l~v~~t~~~~i~~~~~  279 (406)
                                    +..+|.+..+|.+|++-....+....+      +|   .|++-+++.++ +.. +..+..+++
T Consensus       174 --------------G~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlv-CGg-Gp~lslwhL  234 (325)
T KOG0649|consen  174 --------------GAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLV-CGG-GPKLSLWHL  234 (325)
T ss_pred             --------------cCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEE-ecC-CCceeEEec
Confidence                          445688888999888755544332222      22   45666676554 332 234444444

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=81.37  E-value=42  Score=30.47  Aligned_cols=100  Identities=13%  Similarity=0.100  Sum_probs=54.2

Q ss_pred             CcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCC
Q 015463          143 GDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSP  222 (406)
Q Consensus       143 g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  222 (406)
                      ..+..+...+.+..||...|....   ..-|.   -++++.+.+||+.-...+-                          
T Consensus       156 heIvaGS~DGtvRtydiR~G~l~s---Dy~g~---pit~vs~s~d~nc~La~~l--------------------------  203 (307)
T KOG0316|consen  156 HEIVAGSVDGTVRTYDIRKGTLSS---DYFGH---PITSVSFSKDGNCSLASSL--------------------------  203 (307)
T ss_pred             cEEEeeccCCcEEEEEeecceeeh---hhcCC---cceeEEecCCCCEEEEeec--------------------------
Confidence            344444444567788877664321   11122   3678899999986665431                          


Q ss_pred             CcccCCCCeEEEEeCCCCeEEEecccCCCc---ceEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463          223 IKITKDTGRVLKYDPTTKQTTVLLRNLQFP---NGLSLSKDKSFFVFCEGSVGRLHKYWLIG  281 (406)
Q Consensus       223 ~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~---ngi~l~~d~~~l~v~~t~~~~i~~~~~~g  281 (406)
                            ++.|..+|.+||++-..-.+....   --.++.. .....++.+..+.++.|++..
T Consensus       204 ------~stlrLlDk~tGklL~sYkGhkn~eykldc~l~q-sdthV~sgSEDG~Vy~wdLvd  258 (307)
T KOG0316|consen  204 ------DSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQ-SDTHVFSGSEDGKVYFWDLVD  258 (307)
T ss_pred             ------cceeeecccchhHHHHHhcccccceeeeeeeecc-cceeEEeccCCceEEEEEecc
Confidence                  245666788877643222222111   1233332 334556666667788887753

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=81.35  E-value=23  Score=34.21  Aligned_cols=92  Identities=17%  Similarity=0.214  Sum_probs=56.8

Q ss_pred             CcEEEEeCC--CcEEEEeCCCCeEEEcccccCCcccccccc-eEEcCC-CCEEEEeCCCchhhhccccccccccccccCC
Q 015463          143 GDLYIADAY--FGLMKVGPEGGLATSLATEAEGVPLRFTND-LDIDDE-GNVYFTDSSTNYQRRQMQKENIPLQLCSSLN  218 (406)
Q Consensus       143 g~L~Vad~~--~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~-l~~d~d-G~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~  218 (406)
                      +-||+....  ..|+.++.+++..+.+....    . .+.. +.+|.+ +.|||+....                     
T Consensus       249 ~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~----~-~V~~i~~~d~~~~~iyf~a~~~---------------------  302 (353)
T PF00930_consen  249 EFLWISERDGYRHLYLYDLDGGKPRQLTSGD----W-EVTSILGWDEDNNRIYFTANGD---------------------  302 (353)
T ss_dssp             EEEEEEETTSSEEEEEEETTSSEEEESS-SS----S--EEEEEEEECTSSEEEEEESSG---------------------
T ss_pred             EEEEEEEcCCCcEEEEEcccccceeccccCc----e-eecccceEcCCCCEEEEEecCC---------------------
Confidence            346777632  35999999988766554321    1 1223 456665 4788886531                     


Q ss_pred             CCCCCcccCCCCeEEEEeCC-CCeEEEecccCCCcceEEEecCCCEEEEE
Q 015463          219 DPSPIKITKDTGRVLKYDPT-TKQTTVLLRNLQFPNGLSLSKDKSFFVFC  267 (406)
Q Consensus       219 ~~~~~~~~~~~g~l~~~d~~-t~~~~~~~~~~~~~ngi~l~~d~~~l~v~  267 (406)
                             ....-.||+++.+ +++.+.+.........+++|||++.+...
T Consensus       303 -------~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~  345 (353)
T PF00930_consen  303 -------NPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDT  345 (353)
T ss_dssp             -------GTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred             -------CCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEE
Confidence                   1112359999999 88887776543333479999999876544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=81.30  E-value=4.5  Score=24.67  Aligned_cols=33  Identities=33%  Similarity=0.562  Sum_probs=26.7

Q ss_pred             ccCcccCcceEEEcCCCCeeEEEecCCEEEEEe
Q 015463           64 FLNQIQGPESMAFDPLGRGPYTGVADGRILFWD   96 (406)
Q Consensus        64 ~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~   96 (406)
                      +.+.-....++++.++++.+.++..|+.|..|+
T Consensus         7 ~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    7 FRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            344555678999999999889999999988775

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=80.93  E-value=1.4  Score=27.65  Aligned_cols=20  Identities=30%  Similarity=0.715  Sum_probs=16.8

Q ss_pred             ccccceEEcCCCCEEEEeCC
Q 015463          177 RFTNDLDIDDEGNVYFTDSS  196 (406)
Q Consensus       177 ~~~~~l~~d~dG~ly~t~~~  196 (406)
                      ..+++|++|++|++|++-.+
T Consensus        13 ~~~~~IavD~~GNiYv~G~T   32 (38)
T PF06739_consen   13 DYGNGIAVDSNGNIYVTGYT   32 (38)
T ss_pred             eeEEEEEECCCCCEEEEEee
Confidence            35889999999999998643

SBBP stands for Seven Bladed Beta Propeller.

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=80.89  E-value=55  Score=31.51  Aligned_cols=77  Identities=16%  Similarity=0.318  Sum_probs=47.9

Q ss_pred             ccCcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcE
Q 015463           68 IQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL  145 (406)
Q Consensus        68 ~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L  145 (406)
                      ...-|-+.+-|.+..+.+|+.+|.++-|...  ....+. .+  .+..|+              +|     .|-++..++
T Consensus       148 ~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~-~G--h~~~ct--------------~G-----~f~pdGKr~  205 (399)
T KOG0296|consen  148 VEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVM-SG--HNSPCT--------------CG-----EFIPDGKRI  205 (399)
T ss_pred             cCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEe-cC--CCCCcc--------------cc-----cccCCCceE
Confidence            3445666778889989999999999988755  221111 11  111121              23     244534567


Q ss_pred             EEEeCCCcEEEEeCCCCeEEE
Q 015463          146 YIADAYFGLMKVGPEGGLATS  166 (406)
Q Consensus       146 ~Vad~~~gl~~~d~~~~~~~~  166 (406)
                      ..+.....|..+++++++...
T Consensus       206 ~tgy~dgti~~Wn~ktg~p~~  226 (399)
T KOG0296|consen  206 LTGYDDGTIIVWNPKTGQPLH  226 (399)
T ss_pred             EEEecCceEEEEecCCCceeE
Confidence            777666678999999986543

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=80.75  E-value=33  Score=33.64  Aligned_cols=112  Identities=13%  Similarity=0.043  Sum_probs=64.5

Q ss_pred             EEEEeCCCCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCC-CEEEEeCCCchhhhcccccccccc
Q 015463          135 GLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRQMQKENIPLQ  212 (406)
Q Consensus       135 gi~~d~~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~  212 (406)
                      .+++.+....|+.+-.. ..|..+|..++. ........ .--..++++++.+-+ .|..|.++                
T Consensus       232 DV~~h~~h~~lF~sv~dd~~L~iwD~R~~~-~~~~~~~~-ah~~~vn~~~fnp~~~~ilAT~S~----------------  293 (422)
T KOG0264|consen  232 DVAWHPLHEDLFGSVGDDGKLMIWDTRSNT-SKPSHSVK-AHSAEVNCVAFNPFNEFILATGSA----------------  293 (422)
T ss_pred             hhhccccchhhheeecCCCeEEEEEcCCCC-CCCccccc-ccCCceeEEEeCCCCCceEEeccC----------------
Confidence            34455434556654443 457788876431 11111111 112347888988855 44444332                


Q ss_pred             ccccCCCCCCCcccCCCCeEEEEeCCCCeEEEe-ccc-CCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          213 LCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVL-LRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       213 ~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~-~~~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                                      +++|..+|+..-..... ..+ -.....|.+||+.+.++.+....+|+.++++.
T Consensus       294 ----------------D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls  347 (422)
T KOG0264|consen  294 ----------------DKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS  347 (422)
T ss_pred             ----------------CCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence                            47898898864322111 111 12235788999999999888778899999876

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=80.30  E-value=8.2  Score=39.62  Aligned_cols=111  Identities=13%  Similarity=0.041  Sum_probs=62.7

Q ss_pred             ceEEEEeCCC-CcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccc
Q 015463          133 PLGLRFDKKT-GDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPL  211 (406)
Q Consensus       133 p~gi~~d~~~-g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~  211 (406)
                      ...|+|.+-. +-|.++.+...|-.+|..+.+...-.....    ..+-+++..+||+...+...               
T Consensus       680 I~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHt----dqIf~~AWSpdGr~~AtVcK---------------  740 (1012)
T KOG1445|consen  680 ITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHT----DQIFGIAWSPDGRRIATVCK---------------  740 (1012)
T ss_pred             EEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCc----CceeEEEECCCCcceeeeec---------------
Confidence            4556666532 335556555678888877654322111111    23568899999988877543               


Q ss_pred             cccccCCCCCCCcccCCCCeEEEEeCCCCeEEEeccc-CCCcc--eEEEecCCCEEEEEeCCC---CeEEEEEe
Q 015463          212 QLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRN-LQFPN--GLSLSKDKSFFVFCEGSV---GRLHKYWL  279 (406)
Q Consensus       212 ~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~~n--gi~l~~d~~~l~v~~t~~---~~i~~~~~  279 (406)
                                       +|+|..|+|..++..+.... .....  -|.+.=|++.++++...+   ..|..|+.
T Consensus       741 -----------------Dg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~A  797 (1012)
T KOG1445|consen  741 -----------------DGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDA  797 (1012)
T ss_pred             -----------------CceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhh
Confidence                             58999999987765443211 11111  244555777666665432   23555553

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=80.18  E-value=32  Score=37.04  Aligned_cols=79  Identities=18%  Similarity=0.304  Sum_probs=43.4

Q ss_pred             CCeEEEEeCCCCeEEEec-ccCC-----CcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCC---c
Q 015463          229 TGRVLKYDPTTKQTTVLL-RNLQ-----FPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPD---N  299 (406)
Q Consensus       229 ~g~l~~~d~~t~~~~~~~-~~~~-----~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd---~  299 (406)
                      ..+|+++||.-..-+.+. ....     .-.++|-+.+|..  +..+..+.|..|+..|.++.+     .+||+-+   +
T Consensus       551 ~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~i--avgs~~G~IRLyd~~g~~AKT-----~lp~lG~pI~~  623 (794)
T PF08553_consen  551 DNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYI--AVGSNKGDIRLYDRLGKRAKT-----ALPGLGDPIIG  623 (794)
T ss_pred             CCceEEeccCCCCCceeeccccccccCCCceEEEecCCceE--EEEeCCCcEEeecccchhhhh-----cCCCCCCCeeE
Confidence            367999999753211111 1111     1235666666643  333456788888755433222     1455433   5


Q ss_pred             eEECCCCCEEEEEcc
Q 015463          300 VRTNEKGEFWVAIHC  314 (406)
Q Consensus       300 i~~d~~G~lwv~~~~  314 (406)
                      |.+..||+..+|+..
T Consensus       624 iDvt~DGkwilaTc~  638 (794)
T PF08553_consen  624 IDVTADGKWILATCK  638 (794)
T ss_pred             EEecCCCcEEEEeec
Confidence            678899987677644

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	406
2fp8_A	322	Structure Of Strictosidine Synthase, The Biosynthet		9e-38
2v91_A	302	Structure Of Strictosidine Synthase In Complex With		2e-37
2fpb_A	322	Structure Of Strictosidine Synthase, The Biosynthet		6e-36
3hlh_A	314	Diisopropyl Fluorophosphatase (Dfpase), Active Site		5e-04
3hli_A	314	Diisopropyl Fluorophosphatase (Dfpase), Active Site		5e-04
2iax_A	312	Crystal Structure Of Squid Ganglion Dfpase D232s Mu		8e-04
2iaq_A	312	Crystal Structure Of Squid Ganglion Dfpase S271a Mu		9e-04
1e1a_A	314	Crystal Structure Of Dfpase From Loligo Vulgaris Le		9e-04
2iao_A	312	Crystal Structure Of Squid Ganglion Dfpase E37q Mut		9e-04
2iap_A	312	Crystal Structure Of Squid Ganglion Dfpase E21q Mut		9e-04

>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322

Iteration: 1
 Score =  154 bits (389), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 110/343 (32%), Positives = 162/343 (47%), Gaps = 58/343 (16%)
Query: 70  GPESMAFDPLGRGPYTGVADGRILFWDGLK--WTDFAFTSN--NRSELCNPKPIATSYLK 125
            P S  FD   +G YT V DGR++ ++G    + DFA+ S   N++  C     A    +
Sbjct: 20  APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKA-FCENSTDA----E 74
Query: 126 NEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDID 185
              +CGR   + ++ +   LYI D Y+ L  VG EGG AT LAT  +GVP ++   + +D
Sbjct: 75  KRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVD 134
Query: 186 DE-GNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKD-TGRVLKYDPTTKQTT 243
              G VYFTD ST Y  R +Q+                I  T D TGR++KYDP+TK+TT
Sbjct: 135 QRTGIVYFTDVSTLYDDRGVQQ----------------IMDTSDKTGRLIKYDPSTKETT 178
Query: 244 VLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTN 303
           +LL+ L  P G  +S D SF +  E    ++ KYWL G K G  E    +P  P N++ N
Sbjct: 179 LLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRN 237
Query: 304 EKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEG 363
             G FWV                            S+      ++ GR+    +K+   G
Sbjct: 238 ADGHFWV----------------------------SSSEELDGNMHGRVDPKGIKFDEFG 269
Query: 364 KILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVA--VYD 404
            IL+V+        +   +++E DG L++G++    V   VYD
Sbjct: 270 NILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYD 312

>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With Strictosidine Length = 302

Iteration: 1
 Score =  153 bits (387), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 106/338 (31%), Positives = 159/338 (47%), Gaps = 54/338 (15%)
Query: 70  GPESMAFDPLGRGPYTGVADGRILFWDGLK--WTDFAFTSNNRSE-LCNPKPIATSYLKN 126
            P S  FD   +G YT V DGR++ ++G    + DFA+ S   ++  C     A    + 
Sbjct: 11  APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDA----EK 66
Query: 127 EHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD 186
             +CGR   + ++ +   LYI D Y+ L  VG EGG AT LAT  +GVP ++   + +D 
Sbjct: 67  RPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQ 126
Query: 187 E-GNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKD-TGRVLKYDPTTKQTTV 244
             G VYFTD ST Y  R +Q+                I  T D TGR++KYDP+TK+TT+
Sbjct: 127 RTGIVYFTDVSTLYDDRGVQQ----------------IMDTSDKTGRLIKYDPSTKETTL 170
Query: 245 LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNE 304
           LL+ L  P G  +S D SF +  E    ++ KYWL G K G  E    +P  P N++ N 
Sbjct: 171 LLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNA 229
Query: 305 KGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGK 364
            G FWV                            S+      ++ GR+    +K+   G 
Sbjct: 230 DGHFWV----------------------------SSSEELDGNMHGRVDPKGIKFDEFGN 261
Query: 365 ILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAV 402
           IL+V+        +   +++E DG L++G++    V +
Sbjct: 262 ILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGI 299

>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322

Iteration: 1
 Score =  148 bits (373), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 108/343 (31%), Positives = 156/343 (45%), Gaps = 58/343 (16%)
Query: 70  GPESMAFDPLGRGPYTGVADGRILFWDGLK--WTDFAFTSN--NRSELCNPKPIATSYLK 125
            P S  FD   +G YT V DGR+  ++G    + DFA+ S   N++  C     A    +
Sbjct: 20  APNSFTFDSTNKGFYTSVQDGRVXKYEGPNSGFVDFAYASPYWNKA-FCENSTDA----E 74
Query: 126 NEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDID 185
              +CGR   + ++ +    YI D Y+ L  VG EGG AT LAT  +GVP ++   + +D
Sbjct: 75  KRPLCGRTYDISYNLQNNQXYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVD 134
Query: 186 DE-GNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKD-TGRVLKYDPTTKQTT 243
              G VYFTD ST Y  R +Q+                I  T D TGR+ KYDP+TK+TT
Sbjct: 135 QRTGIVYFTDVSTLYDDRGVQQ----------------IXDTSDKTGRLXKYDPSTKETT 178
Query: 244 VLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTN 303
           +L + L  P G  +S D SF +  E    ++ KYWL G K G  E    +P  P N++ N
Sbjct: 179 LLXKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRN 237
Query: 304 EKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEG 363
             G FWV+         H                            GR+    +K+   G
Sbjct: 238 ADGHFWVSSSEELDGNXH----------------------------GRVDPKGIKFDEFG 269
Query: 364 KILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVA--VYD 404
            IL+V+        +   +++E DG L++G++    V   VYD
Sbjct: 270 NILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYD 312

>pdb|3HLH|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), Active Site Mutants Length = 314

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 20/128 (15%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
           G P G + D+    L++AD   GL+ V  +G        ++EG  ++  ND   D EGN+
Sbjct: 71  GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 130
Query: 191 YFTDSSTNYQRRQMQKENIPLQLCSSLNDP-SPIKITKDTGRVLKYDPTTKQTTVLLRNL 249
           + T  +          E  P    +S+ +    I      G++++ D             
Sbjct: 131 WITAPAG---------EVAPADATASMQEKFGSIYCFTTDGQMIQVDTA----------F 171
Query: 250 QFPNGLSL 257
           QFPNG+++
Sbjct: 172 QFPNGIAV 179

>pdb|3HLI|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), Active Site Mutants Length = 314

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 20/128 (15%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
           G P G + D+    L++AD   GL+ V  +G        ++EG  ++  ND   D EGN+
Sbjct: 71  GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 130
Query: 191 YFTDSSTNYQRRQMQKENIPLQLCSSLNDP-SPIKITKDTGRVLKYDPTTKQTTVLLRNL 249
           + T  +          E  P    +S+ +    I      G++++ D             
Sbjct: 131 WITAPAG---------EVAPADATASMQEKFGSIYCFTTDGQMIQVDTA----------F 171
Query: 250 QFPNGLSL 257
           QFPNG+++
Sbjct: 172 QFPNGIAV 179

>pdb|2IAX|A Chain A, Crystal Structure Of Squid Ganglion Dfpase D232s Mutant Length = 312

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 20/128 (15%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
           G P G + D+    L++AD   GL+ V  +G        ++EG  ++  ND   D EGN+
Sbjct: 69  GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 191 YFTDSSTNYQRRQMQKENIPLQLCSSLNDP-SPIKITKDTGRVLKYDPTTKQTTVLLRNL 249
           + T  +          E  P     S+ +    I      G++++ D             
Sbjct: 129 WITAPAG---------EVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTA----------F 169
Query: 250 QFPNGLSL 257
           QFPNG+++
Sbjct: 170 QFPNGIAV 177

>pdb|2IAQ|A Chain A, Crystal Structure Of Squid Ganglion Dfpase S271a Mutant Length = 312

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 20/128 (15%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
           G P G + D+    L++AD   GL+ V  +G        ++EG  ++  ND   D EGN+
Sbjct: 69  GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 191 YFTDSSTNYQRRQMQKENIPLQLCSSLNDP-SPIKITKDTGRVLKYDPTTKQTTVLLRNL 249
           + T  +          E  P     S+ +    I      G++++ D             
Sbjct: 129 WITAPAG---------EVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTA----------F 169
Query: 250 QFPNGLSL 257
           QFPNG+++
Sbjct: 170 QFPNGIAV 177

>pdb|1E1A|A Chain A, Crystal Structure Of Dfpase From Loligo Vulgaris Length = 314

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 20/128 (15%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
           G P G + D+    L++AD   GL+ V  +G        ++EG  ++  ND   D EGN+
Sbjct: 71  GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 130
Query: 191 YFTDSSTNYQRRQMQKENIPLQLCSSLNDP-SPIKITKDTGRVLKYDPTTKQTTVLLRNL 249
           + T  +          E  P     S+ +    I      G++++ D             
Sbjct: 131 WITAPAG---------EVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTA----------F 171
Query: 250 QFPNGLSL 257
           QFPNG+++
Sbjct: 172 QFPNGIAV 179

>pdb|2IAO|A Chain A, Crystal Structure Of Squid Ganglion Dfpase E37q Mutant Length = 312

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 20/128 (15%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
           G P G + D+    L++AD   GL+ V  +G        ++EG  ++  ND   D EGN+
Sbjct: 69  GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 191 YFTDSSTNYQRRQMQKENIPLQLCSSLNDP-SPIKITKDTGRVLKYDPTTKQTTVLLRNL 249
           + T  +          E  P     S+ +    I      G++++ D             
Sbjct: 129 WITAPAG---------EVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTA----------F 169
Query: 250 QFPNGLSL 257
           QFPNG+++
Sbjct: 170 QFPNGIAV 177

>pdb|2IAP|A Chain A, Crystal Structure Of Squid Ganglion Dfpase E21q Mutant Length = 312

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 20/128 (15%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
           G P G + D+    L++AD   GL+ V  +G        ++EG  ++  ND   D EGN+
Sbjct: 69  GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 191 YFTDSSTNYQRRQMQKENIPLQLCSSLNDP-SPIKITKDTGRVLKYDPTTKQTTVLLRNL 249
           + T  +          E  P     S+ +    I      G++++ D             
Sbjct: 129 WITAPAG---------EVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTA----------F 169
Query: 250 QFPNGLSL 257
           QFPNG+++
Sbjct: 170 QFPNGIAV 177

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	406
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	1e-106
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	2e-34
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	3e-30
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	5e-15
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	7e-14
2p4o_A	306	Hypothetical protein; putative lactonase, structur	1e-13
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	9e-13
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	1e-10
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	9e-10
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	1e-12
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	2e-12
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	4e-12
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	1e-11
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	1e-10
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	3e-07
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	2e-05
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	4e-04
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	6e-05
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	3e-04
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	3e-04

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Length = 322

 Score =  315 bits (809), Expect = e-106
 Identities = 101/350 (28%), Positives = 154/350 (44%), Gaps = 50/350 (14%)

Query: 60  SEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFW--DGLKWTDFAFTSNNRSELCNPK 117
            EI        P S  FD   +G YT V DGR++ +      + DFA+ S   ++     
Sbjct: 10  KEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCEN 69

Query: 118 PIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLR 177
                  +   +CGR   + ++ +   LYI D Y+ L  VG EGG AT LAT  +GVP +
Sbjct: 70  STDA---EKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFK 126

Query: 178 FTNDLDIDDE-GNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYD 236
           +   + +D   G VYFTD ST Y  R +Q+                   +  TGR++KYD
Sbjct: 127 WLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD---------------TSDKTGRLIKYD 171

Query: 237 PTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGY 296
           P+TK+TT+LL+ L  P G  +S D SF +  E    ++ KYWL G K G  E    +P  
Sbjct: 172 PSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN- 230

Query: 297 PDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMA 356
           P N++ N  G FWV+                                   ++ GR+    
Sbjct: 231 PGNIKRNADGHFWVSSSEELDG----------------------------NMHGRVDPKG 262

Query: 357 VKYSPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDLS 406
           +K+   G IL+V+        +   +++E DG L++G++    V +    
Sbjct: 263 IKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYD 312

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Length = 314

 Score =  128 bits (324), Expect = 2e-34
 Identities = 58/325 (17%), Positives = 99/325 (30%), Gaps = 58/325 (17%)

Query: 69  QGPESMAFDPLGR-------GPYTGVADGRILFWD--GLKWTDFAFTSNNRSELCNPKPI 119
            G E   FD  G            G   G IL  D    K T       N          
Sbjct: 18  PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVN---------- 67

Query: 120 ATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFT 179
                      G P G + D+    L++AD   GL+ V  +G        ++EG  ++  
Sbjct: 68  --------GYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGC 119

Query: 180 NDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTT 239
           ND   D EGN++ T  +         +                  + +  G +  +    
Sbjct: 120 NDCAFDYEGNLWITAPAGEVAPADYTR-----------------SMQEKFGSIYCFTTDG 162

Query: 240 KQTTVLLRNLQFPNGLSLSKD----KSFFVFCEGSVGRLHKYWLIGE-KAGNLEAFAILP 294
           +    +    QFPNG+++           +  E    +L  Y + G  K  N + +  +P
Sbjct: 163 Q-MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP 221

Query: 295 ----GYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGG 350
               G  D +  +E     VA        SH+    P      +++    +    +H   
Sbjct: 222 GTHEGGADGMDFDEDNNLLVANWGS----SHIEVFGPDGGQPKMRIRCPFEKPSNLHFKP 277

Query: 351 RLHAMAVKYSPEGKILQVLEDSKGK 375
           +   + V       + +      GK
Sbjct: 278 QTKTIFVTEHENNAVWKFEWQRNGK 302

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* Length = 355

 Score =  118 bits (296), Expect = 3e-30
 Identities = 57/349 (16%), Positives = 95/349 (27%), Gaps = 64/349 (18%)

Query: 69  QGPESMAFDP------------LGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNP 116
            G E +   P             G   +     G+IL  D              SEL   
Sbjct: 50  NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMD------LNEKEPAVSEL--E 101

Query: 117 KPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKV----GPEGGLATSLATEAE 172
               T  + + +  G    +  D  T  L + +       V      E   +        
Sbjct: 102 IIGNTLDISSFNPHGISTFIDDDN-TVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160

Query: 173 GVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRV 232
              L   ND+      + Y T+    +    ++   + L L                  V
Sbjct: 161 HKLLPSVNDIVAVGPEHFYATNDHY-FIDPYLKSWEMHLGLA--------------WSFV 205

Query: 233 LKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI 292
             Y P      V+     F NG+++S D  +    E    ++H Y               
Sbjct: 206 TYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS 263

Query: 293 LPGYPDNVR-TNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGR 351
                DN+      G+ WV  H          A  P     +L++               
Sbjct: 264 FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSE-VLRIQD------------- 309

Query: 352 LHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFV 400
                   S E K+  V  ++ G V++  +      GKL +G+V    +
Sbjct: 310 ------ILSEEPKVTVVYAEN-GTVLQGSTVAAVYKGKLLIGTVFHKAL 351

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Length = 333

 Score = 74.4 bits (183), Expect = 5e-15
 Identities = 33/194 (17%), Positives = 62/194 (31%), Gaps = 40/194 (20%)

Query: 131 GRPLGLRFDKKTGDLYIAD-----AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDID 185
             P  ++  K  G L++       +  G+      G     +  +         +D+  D
Sbjct: 87  ANPAAIKIHKD-GRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLS--TAYCIDDMVFD 143

Query: 186 DEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVL 245
            +G  YFTD          +                    T   G V    P  +  T +
Sbjct: 144 SKGGFYFTD---------FRG-----------------YSTNPLGGVYYVSPDFRTVTPI 177

Query: 246 LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKY------WLIGEKAGNLEAFAILPGYPDN 299
           ++N+   NG++LS D+      E +  RLH+         I      +  +      PD+
Sbjct: 178 IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDS 237

Query: 300 VRTNEKGEFWVAIH 313
              +     +VA++
Sbjct: 238 CCIDSDDNLYVAMY 251

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Length = 296

 Score = 70.9 bits (174), Expect = 7e-14
 Identities = 36/191 (18%), Positives = 64/191 (33%), Gaps = 25/191 (13%)

Query: 131 GRPLGLRFDKKTGDLYIAD-AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN 189
               G   +K+ G L         L +    GG   S+A   EG  L   ND+ +  +G+
Sbjct: 69  HHQNGHCLNKQ-GHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS 127

Query: 190 VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNL 249
           ++F+D    Y   + ++                         V +  P     +  +R+ 
Sbjct: 128 LWFSD--PTYGIDKPEEGYGGEM-------------ELPGRWVFRLAPDGT-LSAPIRDR 171

Query: 250 QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE-KAGNLEAFA-ILPGYPDNVRTNEKGE 307
             PNGL+     +  V  +      H+Y L    +         + PG  D +R +  G 
Sbjct: 172 VKPNGLAFLPSGNLLV-SDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL 230

Query: 308 FWVA----IHC 314
            W +    +H 
Sbjct: 231 IWASAGDGVHV 241

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306

 Score = 70.0 bits (171), Expect = 1e-13
 Identities = 38/246 (15%), Positives = 61/246 (24%), Gaps = 52/246 (21%)

Query: 71  PESMAFDPLGRGPYTGVADGRILFWD--GLKWTDFAFTSNNRSELCNPKPIATSYLKNEH 128
            E++A  P G    T    G I+     G      A                        
Sbjct: 34  LENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATVE--------------------- 71

Query: 129 ICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG 188
             G+  GL F    GDL         + V        ++ T        F N +    + 
Sbjct: 72  --GKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT 128

Query: 189 NVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRN 248
                DS                           I + + +G +    P   ++      
Sbjct: 129 QYLTADSYRGAIWL--------------------IDVVQPSGSIWLEHPMLARSNS---E 165

Query: 249 LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE-KAGNLEAFAILPGYPDNVRTNEKGE 307
             FP    L +  +F          L +  +    K G  E F       D+   + +G 
Sbjct: 166 SVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTN-IDDFAFDVEGN 224

Query: 308 FWVAIH 313
            + A H
Sbjct: 225 LYGATH 230

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 67.4 bits (165), Expect = 9e-13
 Identities = 35/265 (13%), Positives = 78/265 (29%), Gaps = 44/265 (16%)

Query: 61  EIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIA 120
           E+   NQ  GP  +     G+   T      I   +              +E   P P  
Sbjct: 7   ELNLTNQDTGPYGITVSDKGKVWITQHKANMISCIN---------LDGKITEYPLPTPD- 56

Query: 121 TSYLKNEHICGRPLGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFT 179
                      + + L      G+++  +     + ++  +G +        +  P    
Sbjct: 57  ----------AKVMCLTIS-SDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAP---- 101

Query: 180 NDLDIDDEGNVYFTDSSTNY-QRRQMQKENIPLQLCSSLNDPSPIKITKD---------T 229
             +     G+++FT+ + N   R     +    +L +  + PS I +  D          
Sbjct: 102 YGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNALWFTENQN 161

Query: 230 GRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLE 288
             + +   +   T   +      P G++   D + +   E    ++ +       +G + 
Sbjct: 162 NAIGRITESGDITEFKIPTPASGPVGITKGNDDALWF-VEIIGNKIGRI----TTSGEIT 216

Query: 289 AFAILPG--YPDNVRTNEKGEFWVA 311
            F I      P  +      + W  
Sbjct: 217 EFKIPTPNARPHAITAGAGIDLWFT 241

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 25/227 (11%), Positives = 54/227 (23%), Gaps = 37/227 (16%)

Query: 60  SEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPI 119
            E    N    P  +   P G   +T +   RI                   E   P   
Sbjct: 90  KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRIT---------DDGKIREYELPNKG 140

Query: 120 ATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRF 178
                        P  +        L+  +     + ++   G +           P   
Sbjct: 141 -----------SYPSFITLGSD-NALWFTENQNNAIGRITESGDITEF----KIPTPASG 184

Query: 179 TNDLDIDDEGNVYFTDSSTNY-QRRQMQKENIPLQLCSSLNDPSPIKITKD--------- 228
              +   ++  ++F +   N   R     E    ++ +    P  I              
Sbjct: 185 PVGITKGNDDALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITAGAGIDLWFTEWG 244

Query: 229 TGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRL 274
             ++ +           +      P+G+    +  +F      +G+L
Sbjct: 245 ANKIGRLTSNNIIEEYPIQIKSAEPHGICFDGETIWFAMECDKIGKL 291

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 58.1 bits (141), Expect = 9e-10
 Identities = 25/225 (11%), Positives = 63/225 (28%), Gaps = 46/225 (20%)

Query: 69  QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEH 128
                +     G   +T  A  +I                   E   P P          
Sbjct: 57  AKVMCLTISSDGEVWFTENAANKIGRIT---------KKGIIKEYTLPNP---------- 97

Query: 129 ICGRPLGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDE 187
               P G+      GD++  +     + ++  +G +           P    + + +  +
Sbjct: 98  -DSAPYGITEGP-NGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYP----SFITLGSD 151

Query: 188 GNVYFTDSSTNYQRR-----QMQKENIPLQLCSSLNDPSPIKITKD---------TGRVL 233
             ++FT++  N   R      + +  IP    +  + P  I    D           ++ 
Sbjct: 152 NALWFTENQNNAIGRITESGDITEFKIP----TPASGPVGITKGNDDALWFVEIIGNKIG 207

Query: 234 KYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKY 277
           +   + + T   +      P+ ++       +    G+  ++ + 
Sbjct: 208 RITTSGEITEFKIPTPNARPHAITAGAGIDLWFTEWGA-NKIGRL 251

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Length = 305

 Score = 67.4 bits (165), Expect = 1e-12
 Identities = 32/194 (16%), Positives = 53/194 (27%), Gaps = 27/194 (13%)

Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
               G   D +   L   +     +      G A  L     G  L   NDL +  +G +
Sbjct: 86  AFTNGNAVDAQ-QRLVHCEHGRRAITRSDADGQAHLLVGRYAGKRLNSPNDLIVARDGAI 144

Query: 191 YFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQ 250
           +FTD     ++        P                     V +  P        + +L 
Sbjct: 145 WFTDPPFGLRKPSQGCPADPEL---------------AHHSVYRLPPDGSPLQR-MADLD 188

Query: 251 FPNGLSLSKDKSFFVFCEGSVGRLHKYWL-----IGEKAGNLEAFA-ILPGYPDNVRTNE 304
            PNGL+ S D+      +          +           +   FA +  G PD    + 
Sbjct: 189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDR 248

Query: 305 KGEFWVA----IHC 314
            G  W +    +  
Sbjct: 249 GGWLWSSSGTGVCV 262

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 27/198 (13%), Positives = 57/198 (28%), Gaps = 28/198 (14%)

Query: 130 CGRPLGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG 188
              P G+   +  G ++        +  +   G +        +         L +   G
Sbjct: 19  DSGPYGITSSED-GKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKV----MCLIVSSLG 73

Query: 189 NVYFTDSSTNY-QRRQMQKENIPLQLCSSLNDPSPIKITKD---------TGRVLKYDPT 238
           +++FT++  N   +   +       L    + P  I    +           R+ K    
Sbjct: 74  DIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD 133

Query: 239 TKQTTVLL-RNLQFPNGLSLSKDKSFFV--FCEGSVGRLHKYWLIGEKAGNLEAFAILPG 295
                  L     +P  ++L  D + +       S+GR+          G LE + +   
Sbjct: 134 GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRIT-------NTGKLEEYPLPTN 186

Query: 296 --YPDNVRTNEKGEFWVA 311
              P  + +   G  W  
Sbjct: 187 AAAPVGITSGNDGALWFV 204

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 38/269 (14%), Positives = 78/269 (28%), Gaps = 52/269 (19%)

Query: 61  EIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIA 120
           E        GP  +     G+  +T     +I   D          S    E   P P  
Sbjct: 12  EFNLSIPDSGPYGITSSEDGKVWFTQHKANKISSLD---------QSGRIKEFEVPTPD- 61

Query: 121 TSYLKNEHICGRPLGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFT 179
                      + + L      GD++  +     + K+  +GG            P    
Sbjct: 62  ----------AKVMCLIVS-SLGDIWFTENGANKIGKLSKKGGFTEY----PLPQPDSGP 106

Query: 180 NDLDIDDEGNVYFTDSSTNYQRR-----QMQKENIPLQLCSSLNDPSPIKITKD------ 228
             +     G+++FT  + +   +      + + ++P +     + P+ I +  D      
Sbjct: 107 YGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNK----GSYPAFITLGSDNALWFT 162

Query: 229 ---TGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKA 284
                 + +   T K     L  N   P G++   D + +   E    ++ +        
Sbjct: 163 ENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGALWF-VEIMGNKIGRI----TTT 217

Query: 285 GNLEAFAIL--PGYPDNVRTNEKGEFWVA 311
           G +  + I      P  +   +  E W  
Sbjct: 218 GEISEYDIPTPNARPHAITAGKNSEIWFT 246

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 31/265 (11%), Positives = 80/265 (30%), Gaps = 52/265 (19%)

Query: 69  QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEH 128
                +               G I F      T+      N+    + K   T Y   + 
Sbjct: 62  AKVMCLIVSS----------LGDIWF------TE---NGANKIGKLSKKGGFTEYPLPQ- 101

Query: 129 ICGRPLGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDE 187
               P G+      GD++        + K+  +G +              +   + +  +
Sbjct: 102 PDSGPYGITEGL-NGDIWFTQLNGDRIGKLTADGTIYEY----DLPNKGSYPAFITLGSD 156

Query: 188 GNVYFTDSSTNYQRR-----QMQKENIPLQLCSSLNDPSPIKITKD---------TGRVL 233
             ++FT++  N   R     ++++  +P    ++   P  I    D           ++ 
Sbjct: 157 NALWFTENQNNSIGRITNTGKLEEYPLP----TNAAAPVGITSGNDGALWFVEIMGNKIG 212

Query: 234 KYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI 292
           +   T + +   +      P+ ++  K+   +   E    ++ +          ++ + +
Sbjct: 213 RITTTGEISEYDIPTPNARPHAITAGKNSEIWF-TEWGANQIGRI----TNDNTIQEYQL 267

Query: 293 LPG--YPDNVRTNEKGEFWVAIHCR 315
                 P  +   + G  W A+ C+
Sbjct: 268 QTENAEPHGITFGKDGSVWFALKCK 292

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 29/217 (13%), Positives = 58/217 (26%), Gaps = 37/217 (17%)

Query: 70  GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHI 129
           GP  +              +G I F      T     + +R            Y      
Sbjct: 105 GPYGITEGL----------NGDIWF------TQ---LNGDRIGKLTADGTIYEYDLPNKG 145

Query: 130 CGRPLGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG 188
              P  +        L+  +     + ++   G L           P      +   ++G
Sbjct: 146 -SYPAFITLGSD-NALWFTENQNNSIGRITNTGKLEEYPLPTNAAAP----VGITSGNDG 199

Query: 189 NVYFTDSSTNY-QRRQMQKENIPLQLCSSLNDPSPIKITKD---------TGRVLKYDPT 238
            ++F +   N   R     E     + +    P  I   K+           ++ +    
Sbjct: 200 ALWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND 259

Query: 239 TKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRL 274
                  L      P+G++  KD S +   +  +G+L
Sbjct: 260 NTIQEYQLQTENAEPHGITFGKDGSVWFALKCKIGKL 296

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 47/265 (17%), Positives = 85/265 (32%), Gaps = 52/265 (19%)

Query: 65  LNQIQGPESMAFDPLGRGPYTGVAD----GRILFWDGLKWTDFAFTSNNRSELCNPKPIA 120
           ++    P  +A D  G   Y  V      GR++              N            
Sbjct: 20  IDFRLSPSGVAVDSAGN-VY--VTSEGMYGRVVKLATGSTGTTVLPFNGLY--------- 67

Query: 121 TSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTN 180
                      +P GL  D   G +Y+ D    ++ +       T L  +    P     
Sbjct: 68  -----------QPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYP----E 111

Query: 181 DLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQL--CSSLNDPSPIKITK-------DTG- 230
            L +D +G VY  D   N +  ++   +    +   + LNDP  + +         DT  
Sbjct: 112 GLAVDTQGAVYVADRG-NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDN 170

Query: 231 -RVLKYDPTTKQTTVL-LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLE 288
            RV+K +  +    VL   ++  P G+++ +  + +V  E +  ++ K            
Sbjct: 171 NRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYV-TEHNTNQVVKL----LAGSTTS 225

Query: 289 AFAILPG--YPDNVRTNEKGEFWVA 311
                 G   P  V  +     +VA
Sbjct: 226 TVLPFTGLNTPLAVAVDSDRTVYVA 250

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 38/210 (18%), Positives = 75/210 (35%), Gaps = 36/210 (17%)

Query: 59  NSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKP 118
           + +   ++ +  P+ +A D LG   Y               WTD   +  NR E+ N   
Sbjct: 74  SVQNVVVSGLLSPDGLACDWLGEKLY---------------WTD---SETNRIEVSNLDG 115

Query: 119 IATSYLKNEHICGRPLGLRFDKKTGDLYIAD--AYFGLMKVGPEGGLATSLATEAEGVPL 176
                L  + +  +P  +  D  +G +Y  D      + + G +G     +       P 
Sbjct: 116 SLRKVLFWQEL-DQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWP- 173

Query: 177 RFTNDLDIDDEGN-VYFTDSSTNYQRRQ-MQKENIPLQLCSSLNDPSPIKITKD------ 228
              N L +D E   +Y+ D+  N+  +  +   N    +  SL  P  + + +D      
Sbjct: 174 ---NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTD 230

Query: 229 --TGRVLKYDPTT-KQTTVLLRNLQFPNGL 255
             T  +L  +  T +    +  ++  P  +
Sbjct: 231 WSTHSILACNKYTGEGLREIHSDIFSPMDI 260

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 41.7 bits (97), Expect = 4e-04
 Identities = 37/206 (17%), Positives = 67/206 (32%), Gaps = 35/206 (16%)

Query: 59  NSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKP 118
            S+     QI  P+ +A D + R  Y               WTD   T  +R E+     
Sbjct: 382 GSQFVVTAQIAHPDGIAVDWVARNLY---------------WTD---TGTDRIEVTRLNG 423

Query: 119 IATSYLKNEHICGRPLGLRFDKKTGDLYIADA--YFGLMKVGPEGGLATSLATEAEGVPL 176
                L +E +   P  +  D   G +Y  D      + +   +G     L   + G P 
Sbjct: 424 TMRKILISEDL-EEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWP- 481

Query: 177 RFTNDLDID-DEGNVYFTDSSTNY-QRRQMQKENIPLQLCSSLNDPSPIKITKD------ 228
              N L +D DEG +Y+ D+ T+  +          + +   +       +  D      
Sbjct: 482 ---NGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDYVYWTD 538

Query: 229 --TGRVLKYDPTTKQTTVLLRNLQFP 252
                + +    + +  V++  L   
Sbjct: 539 WQRRSIERVHKRSAEREVIIDQLPDL 564

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score = 43.5 bits (102), Expect = 6e-05
 Identities = 42/219 (19%), Positives = 68/219 (31%), Gaps = 38/219 (17%)

Query: 52  DDKNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRS 111
           D  + + + +      IQ P+ +A D +    Y               WTD   +     
Sbjct: 60  DRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIY---------------WTD---SVLGTV 101

Query: 112 ELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD--AYFGLMKVGPEGGLATSLAT 169
            + + K +    L  E+   +P  +  D   G +Y  D      + K G  G    SL T
Sbjct: 102 SVADTKGVKRKTLFRENG-SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 160

Query: 170 EAEGVPLRFTNDLDID-DEGNVYFTDSSTNYQRR-QMQKENIPLQLCSSLNDPSPIKITK 227
           E    P    N + +D   G +Y+ DS  +      +   N    L        P  +  
Sbjct: 161 ENIQWP----NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV 216

Query: 228 DTGRVLKYD-----------PTTKQTTVLLRNLQFPNGL 255
              +V   D            T     +L  NL  P  +
Sbjct: 217 FEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDM 255

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 13/79 (16%)

Query: 132 RPLGLRFDKKTGDLYIADAYFG--LMKVGPEGGLATSLA--------TEAEGVPLRFTN- 180
           +P G+  D+  G+ YI D + G  L K+    G  +++A         +   +   F   
Sbjct: 324 QPNGMTVDE-DGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYP 382

Query: 181 -DLDIDDEGNVYFTDSSTN 198
            D+  D EG  +  ++   
Sbjct: 383 YDICYDGEGGYWIAEAWGK 401

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 34/221 (15%), Positives = 71/221 (32%), Gaps = 46/221 (20%)

Query: 52  DDKNLLQNSEIKFLNQIQGPESMAFDPLGRGPY--------TGVA--DG---RILFWDGL 98
           D  + + + +      IQ P+ +A D +    Y          VA   G   + LF +  
Sbjct: 142 DRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG 201

Query: 99  K---------------WTDFAFTSNNRSELC-----NPKPIATSYLKNEHICGRPLGLRF 138
                           WTD+   +  + +       +   + T  +        P G+  
Sbjct: 202 SKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGVDIYSLVTENI------QWPNGITL 253

Query: 139 DKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSST 197
           D  +G LY  D+    +  +   GG   ++  + + +   F   L +  E  V++TD   
Sbjct: 254 DLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPF--SLAV-FEDKVFWTDIIN 310

Query: 198 NYQRRQMQKENIPLQ-LCSSLNDPSPIKITKDTGRVLKYDP 237
                  +     +  L  +L  P  + +  +  +    + 
Sbjct: 311 EAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNW 351

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	406
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	100.0
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	99.96
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.94
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.93
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.91
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.9
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.86
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.85
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.84
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.82
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.8
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.79
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.78
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.77
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.77
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.77
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.77
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.76
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.75
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.75
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.74
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.72
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.72
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.71
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.71
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.7
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.7
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.69
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.68
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.66
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.65
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.64
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.64
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.62
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.62
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.61
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.61
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.61
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.6
3ott_A	758	Two-component system sensor histidine kinase; beta	99.59
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.59
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.58
3ott_A	758	Two-component system sensor histidine kinase; beta	99.57
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.56
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.54
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.54
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.54
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.53
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.52
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	99.5
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.5
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.49
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.49
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.49
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.48
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.48
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.48
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.47
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.46
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.46
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.42
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.42
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.41
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.39
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.39
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.38
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.37
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.37
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.37
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.36
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.35
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.35
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.35
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.28
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.26
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.25
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.25
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.25
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.23
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.19
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.18
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.17
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	99.15
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.15
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.13
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.12
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.11
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.11
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.06
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.06
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.05
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.05
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.05
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.05
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.0
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.97
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.97
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.94
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	98.93
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.92
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.9
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.88
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.88
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.87
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.84
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.82
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.79
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.77
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	98.76
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.75
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.75
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.75
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.75
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	98.75
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.73
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.72
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.71
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	98.7
3ow8_A	321	WD repeat-containing protein 61; structural genomi	98.69
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.67
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.65
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.65
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.62
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.62
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	98.61
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.61
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.61
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	98.6
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.59
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.58
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.58
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.56
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.55
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.52
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.52
3ow8_A	321	WD repeat-containing protein 61; structural genomi	98.52
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.51
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.5
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.49
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	98.49
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.47
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.47
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.47
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.45
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.45
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.45
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	98.44
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.42
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	98.41
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	98.41
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.4
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	98.4
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.4
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.39
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.39
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	98.38
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.38
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	98.37
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.34
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.33
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.33
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.33
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.33
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.32
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.31
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	98.31
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.31
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.3
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.3
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.3
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	98.29
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	98.28
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.28
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	98.28
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.27
3jrp_A	379	Fusion protein of protein transport protein SEC13	98.25
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.24
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	98.23
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.23
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	98.23
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	98.21
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	98.2
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.2
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.2
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.19
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	98.16
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.15
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.15
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.15
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.14
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.13
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	98.13
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	98.12
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.11
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	98.11
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	98.1
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.1
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.1
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	98.09
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	98.09
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	98.07
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.05
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	98.05
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	98.04
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	98.03
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.02
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	98.02
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	97.99
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	97.99
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	97.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	97.97
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.95
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	97.95
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	97.94
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.94
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	97.94
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	97.93
2pm7_B	297	Protein transport protein SEC13, protein transport	97.92
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	97.92
3jrp_A	379	Fusion protein of protein transport protein SEC13	97.91
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	97.9
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	97.89
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	97.89
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	97.87
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.87
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	97.87
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	97.86
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	97.85
3jro_A	753	Fusion protein of protein transport protein SEC13	97.85
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	97.84
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	97.84
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	97.83
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	97.82
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	97.81
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	97.81
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	97.81
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	97.79
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	97.79
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	97.77
1k32_A	1045	Tricorn protease; protein degradation, substrate g	97.76
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	97.74
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	97.73
1k32_A	1045	Tricorn protease; protein degradation, substrate g	97.72
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	97.71
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.71
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	97.7
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	97.7
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	97.7
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	97.7
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	97.67
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.67
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.66
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.64
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	97.62
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	97.62
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	97.59
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	97.58
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.55
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.53
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	97.53
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.5
3jro_A	753	Fusion protein of protein transport protein SEC13	97.5
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	97.48
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	97.47
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	97.46
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	97.44
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.42
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	97.4
2pm7_B	297	Protein transport protein SEC13, protein transport	97.39
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	97.37
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.31
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.27
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.25
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	97.25
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	97.24
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	97.23
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	97.21
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	97.18
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	97.15
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	97.14
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.13
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	97.01
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	97.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	96.95
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	96.93
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	96.89
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	96.85
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.84
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.81
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	96.78
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	96.77
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	96.73
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	96.7
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	96.69
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	96.64
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	96.59
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.57
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.51
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.49
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	96.48
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	96.45
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	96.2
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.19
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.12
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.1
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.08
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	96.07
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.04
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	96.0
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	95.92
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	95.88
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	95.85
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	95.84
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	95.69
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	95.37
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	95.27
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	95.03
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	94.93
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	94.37
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	94.1
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	92.94
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	92.52
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	92.31
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	91.8
3a0f_A	763	Xyloglucanase; beta-propeller, hydrolase; 2.50A {G	90.03
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	89.15
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	87.45
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	85.89
3a0f_A	763	Xyloglucanase; beta-propeller, hydrolase; 2.50A {G	84.94
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	84.93
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	83.38
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	82.22
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	81.04

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=100.00  E-value=3.7e-32  Score=259.17  Aligned_cols=295  Identities=34%  Similarity=0.635  Sum_probs=222.0

Q ss_pred             ccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCc-cccCCCCCcccccccCCcCCcceEEEEeC
Q 015463           64 FLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRS-ELCNPKPIATSYLKNEHICGRPLGLRFDK  140 (406)
Q Consensus        64 ~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~gi~~d~  140 (406)
                      ..+++.+||++++|++|+++|+++.+++|++++.+  .++.+........ ..|.+...    ......+++|.||++++
T Consensus        14 ~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~p~gi~~~~   89 (322)
T 2fp8_A           14 IEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTD----AEKRPLCGRTYDISYNL   89 (322)
T ss_dssp             EECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCC----GGGHHHHCCEEEEEEET
T ss_pred             cCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccc----hhccccCCCCceEEEcC
Confidence            34678899999999999889999999999999876  4555543211000 01111000    01112356799999995


Q ss_pred             CCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcC-CCCEEEEeCCCchhhhccccccccccccccCCC
Q 015463          141 KTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKENIPLQLCSSLND  219 (406)
Q Consensus       141 ~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~  219 (406)
                      ++|+|||++...+|+++|+++++++.+.....+.++..|+++++|+ +|++|+++....+..+++      ...+++   
T Consensus        90 ~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~------~~~~~~---  160 (322)
T 2fp8_A           90 QNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGV------QQIMDT---  160 (322)
T ss_dssp             TTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCH------HHHHHH---
T ss_pred             CCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCccccccccc------ceehcc---
Confidence            4789999998889999999887766665544555677899999999 999999997533322222      222333   


Q ss_pred             CCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCc
Q 015463          220 PSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDN  299 (406)
Q Consensus       220 ~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~  299 (406)
                            ....|+|+++|+++++.+.+...+..|+||++++|++.+|++++..++|++|++++...+..+.+.+++| |++
T Consensus       161 ------~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~g  233 (322)
T 2fp8_A          161 ------SDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGN  233 (322)
T ss_dssp             ------TCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEE
T ss_pred             ------cCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCC
Confidence                  3456889999999898888777888999999999999999999988999999998766666677777778 999


Q ss_pred             eEECCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCCEEEEEECCCCCeeec
Q 015463          300 VRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKA  379 (406)
Q Consensus       300 i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~~  379 (406)
                      +++|++|++||+....+..+                 +..           ...+.++++|++|+.+..+..++|..+..
T Consensus       234 i~~d~~G~l~va~~~~~~~~-----------------~~~-----------~~~~~v~~~d~~G~~~~~~~~~~g~~~~~  285 (322)
T 2fp8_A          234 IKRNADGHFWVSSSEELDGN-----------------MHG-----------RVDPKGIKFDEFGNILEVIPLPPPFAGEH  285 (322)
T ss_dssp             EEECTTSCEEEEEEEETTSS-----------------TTS-----------CEEEEEEEECTTSCEEEEEECCTTTTTSC
T ss_pred             eEECCCCCEEEEecCccccc-----------------ccC-----------CCccEEEEECCCCCEEEEEECCCCCcccc
Confidence            99999999999986532211                 000           12346899999999999998888765566


Q ss_pred             eeEEEEeCCEEEEecCCCCeEEEEeCC
Q 015463          380 ISEVEEKDGKLWMGSVLMPFVAVYDLS  406 (406)
Q Consensus       380 ~s~~~~~~g~Ly~Gs~~~~~i~~~~~~  406 (406)
                      ++.+...+|+||+++..+++|.++++.
T Consensus       286 ~~~~~~~~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          286 FEQIQEHDGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             CCEEEEETTEEEEECSSCSEEEEEEC-
T ss_pred             ceEEEEeCCEEEEeecCCCceEEEecc
Confidence            777777899999999999999999863

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=99.96  E-value=1.1e-26  Score=222.65  Aligned_cols=279  Identities=18%  Similarity=0.222  Sum_probs=197.0

Q ss_pred             cCcccCcceEEEcCCCCeeEEEe-------------cCCEEEEEeCC----ceeEEEeecCCCccccCCCCCcccccccC
Q 015463           65 LNQIQGPESMAFDPLGRGPYTGV-------------ADGRILFWDGL----KWTDFAFTSNNRSELCNPKPIATSYLKNE  127 (406)
Q Consensus        65 ~~~~~gpe~i~~d~~g~~ly~g~-------------~~g~I~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (406)
                      ++...|||+|+++++|. +|+++             .+|+|++++.+    +.+++.....                ...
T Consensus        46 ~~~~~G~EDi~~~~~G~-~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~----------------~~~  108 (355)
T 3sre_A           46 KGIDNGSEDLEILPNGL-AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGN----------------TLD  108 (355)
T ss_dssp             TTCCSCCCEEEECTTSE-EEEEECCC-----------CCEEEEEETTSSSCCEEECEEECS----------------SCC
T ss_pred             CCCCCCcceeEEcCCCe-EEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCC----------------CCC
Confidence            44357999999999886 89997             68999999975    3333332210                011


Q ss_pred             CcCCcceEEEEeCC-CC--cEEEEeCCC-----cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCch
Q 015463          128 HICGRPLGLRFDKK-TG--DLYIADAYF-----GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNY  199 (406)
Q Consensus       128 ~~~~~p~gi~~d~~-~g--~L~Vad~~~-----gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~  199 (406)
                      ....+|+||.+..+ +|  +|||+++..     +|++++++++.... .....+.+++.+|+++++++|.+|+++... +
T Consensus       109 ~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~-~~~~~g~~~~~pND~~v~~~G~fyvt~~~~-f  186 (355)
T 3sre_A          109 ISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLH-LKTIRHKLLPSVNDIVAVGPEHFYATNDHY-F  186 (355)
T ss_dssp             GGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEE-EEEECCTTCSSEEEEEEEETTEEEEEESCS-C
T ss_pred             cCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEE-EeccccCCCCCCceEEEeCCCCEEecCCcE-e
Confidence            12468999998552 34  699998864     39999998775444 445567789999999999999999998531 0


Q ss_pred             hhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEe
Q 015463          200 QRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWL  279 (406)
Q Consensus       200 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~  279 (406)
                      ....+     ...+.++         ..+.|+|++||+.  +++++.+++..||||+++||++.+|++++..++|++|++
T Consensus       187 td~~~-----~~~e~~~---------~~~~g~vyr~d~~--~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~  250 (355)
T 3sre_A          187 IDPYL-----KSWEMHL---------GLAWSFVTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEK  250 (355)
T ss_dssp             SSHHH-----HHHHHHT---------TCCCEEEEEECTT--CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             CCccc-----ccchhhc---------cCCccEEEEEECC--eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEE
Confidence            00000     0011111         3456899999994  677788999999999999999999999999999999999


Q ss_pred             eCC-CCcceeeeecCCCCCCceEECC-CCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEE
Q 015463          280 IGE-KAGNLEAFAILPGYPDNVRTNE-KGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAV  357 (406)
Q Consensus       280 ~g~-~~~~~~~~~~l~g~pd~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~  357 (406)
                      +.. +.+..++| +++|.|||+++|+ +|++|++...+...              +.++....          .....+.
T Consensus       251 ~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~--------------v~~~~P~~----------~~~s~v~  305 (355)
T 3sre_A          251 HANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMR--------------IFFYDAEN----------PPGSEVL  305 (355)
T ss_dssp             CTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHH--------------HHSCCTTS----------CCCEEEE
T ss_pred             CCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCceE--------------EEEECCCC----------CCCCEEE
Confidence            742 33444556 6789999999999 59999987532111              11111100          0112355


Q ss_pred             EEC----CCCCEEEEEECCCCCeeeceeEEEEeCCEEEEecCCCCeEEEEeC
Q 015463          358 KYS----PEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDL  405 (406)
Q Consensus       358 ~~d----~~g~~~~~~~~~~g~~~~~~s~~~~~~g~Ly~Gs~~~~~i~~~~~  405 (406)
                      ++.    +++++...|.+ +|+.+...|.+.+.+|+||+||+..+ +..|+|
T Consensus       306 rI~~~~~~~~~v~~v~~d-dG~~l~~~T~a~~~~g~L~iGsv~~~-~l~c~~  355 (355)
T 3sre_A          306 RIQDILSEEPKVTVVYAE-NGTVLQGSTVAAVYKGKLLIGTVFHK-ALYCDL  355 (355)
T ss_dssp             EEECTTSSSCEEEEEEEE-CSSSCCSEEEEEEETTEEEEEESSSC-EEEEEC
T ss_pred             EEEccCCCCcEEEEEEEc-CCCEEEeeEEEEEECCEEEEEEcCCC-ceeccC
Confidence            554    57888889987 89888888888899999999999888 555654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.94  E-value=1.8e-24  Score=204.23  Aligned_cols=258  Identities=17%  Similarity=0.229  Sum_probs=191.3

Q ss_pred             cceeccCcccCcceEEEcCCCC-eeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEE
Q 015463           60 SEIKFLNQIQGPESMAFDPLGR-GPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLR  137 (406)
Q Consensus        60 ~~~~~~~~~~gpe~i~~d~~g~-~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~  137 (406)
                      .+++. .++..+|+++++++|+ ++|+++.+++|++++.+ +.+.+...                       .+.|.+++
T Consensus        37 ~~~l~-~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~-----------------------~~~~~gl~   92 (305)
T 3dr2_A           37 LLTLY-DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDA-----------------------TAFTNGNA   92 (305)
T ss_dssp             CEEEE-CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEES-----------------------CSCEEEEE
T ss_pred             eEEEe-cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCC-----------------------CCccceee
Confidence            34443 4577899999999998 78899999999999876 44444321                       24589999


Q ss_pred             EeCCCCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccccccccccc
Q 015463          138 FDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSS  216 (406)
Q Consensus       138 ~d~~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e  216 (406)
                      +++ +|+||+++.. ++|.+++++ ++++.+.....+.+++.+++++++++|++|++|+..+... ++  ++.  .... 
T Consensus        93 ~d~-dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~-~~--~~~--~~~~-  164 (305)
T 3dr2_A           93 VDA-QQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRK-PS--QGC--PADP-  164 (305)
T ss_dssp             ECT-TSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSC-GG--GSC--CCCC-
T ss_pred             ECC-CCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccc-cc--ccc--cccc-
Confidence            999 8999999976 689999997 6666665555566678899999999999999986321100 00  000  0000 


Q ss_pred             CCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCC-----CeEEEEEeeCCCCcceeeee
Q 015463          217 LNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV-----GRLHKYWLIGEKAGNLEAFA  291 (406)
Q Consensus       217 ~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~-----~~i~~~~~~g~~~~~~~~~~  291 (406)
                               ....++|+++|+++++++.+. .+..++|+++++|++.+|++++..     ++|++|++++......+.+.
T Consensus       165 ---------~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~  234 (305)
T 3dr2_A          165 ---------ELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFA  234 (305)
T ss_dssp             ---------SSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEE
T ss_pred             ---------ccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEE
Confidence                     122467999999888887777 778899999999999999999863     79999998754333344555


Q ss_pred             c-CCCCCCceEECCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCCEEEEEE
Q 015463          292 I-LPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLE  370 (406)
Q Consensus       292 ~-l~g~pd~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~  370 (406)
                      + ..+.|+++++|++|++|+++..+                                        |.+|+++|+.+..+.
T Consensus       235 ~~~~~~pdgi~~d~~G~lwv~~~~g----------------------------------------v~~~~~~g~~~~~~~  274 (305)
T 3dr2_A          235 SVPDGLPDGFCVDRGGWLWSSSGTG----------------------------------------VCVFDSDGQLLGHIP  274 (305)
T ss_dssp             CCSSSCCCSEEECTTSCEEECCSSE----------------------------------------EEEECTTSCEEEEEE
T ss_pred             ECCCCCCCeEEECCCCCEEEecCCc----------------------------------------EEEECCCCCEEEEEE
Confidence            4 46789999999999999998332                                        788999999998887


Q ss_pred             CCCCCeeeceeEEEE--eCCEEEEecCCCCeEEEEeCC
Q 015463          371 DSKGKVVKAISEVEE--KDGKLWMGSVLMPFVAVYDLS  406 (406)
Q Consensus       371 ~~~g~~~~~~s~~~~--~~g~Ly~Gs~~~~~i~~~~~~  406 (406)
                      .+.+     ++.+..  .++.||+++  ...+++++++
T Consensus       275 ~~~~-----~~~~~f~~d~~~L~it~--~~~l~~~~~~  305 (305)
T 3dr2_A          275 TPGT-----ASNCTFDQAQQRLFITG--GPCLWMLPLP  305 (305)
T ss_dssp             CSSC-----CCEEEECTTSCEEEEEE--TTEEEEEECC
T ss_pred             CCCc-----eeEEEEeCCCCEEEEEc--CCeEEEEECC
Confidence            6543     222322  446899998  4789998874

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.93  E-value=2e-23  Score=195.77  Aligned_cols=253  Identities=18%  Similarity=0.241  Sum_probs=186.7

Q ss_pred             cCcccCcceEEEcCCCC-eeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCC
Q 015463           65 LNQIQGPESMAFDPLGR-GPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT  142 (406)
Q Consensus        65 ~~~~~gpe~i~~d~~g~-~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~  142 (406)
                      ..++..||+++++++|+ ++|+++.+++|++++.+ ..+.+..                       ..+.|.+|++++ +
T Consensus        24 ~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~-----------------------~~~~~~~l~~~~-d   79 (296)
T 3e5z_A           24 ADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMH-----------------------PSHHQNGHCLNK-Q   79 (296)
T ss_dssp             ECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEES-----------------------SCSSEEEEEECT-T
T ss_pred             ecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEEC-----------------------CCCCcceeeECC-C
Confidence            34678899999999998 88999999999999987 4333321                       135689999999 8


Q ss_pred             CcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCC
Q 015463          143 GDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPS  221 (406)
Q Consensus       143 g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~  221 (406)
                      |+||+++.. .+|+++|+++++++.+.....+.+...+++++++++|++|++++..+... .+  ++  .....      
T Consensus        80 g~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~-~~--~~--~~~~~------  148 (296)
T 3e5z_A           80 GHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDK-PE--EG--YGGEM------  148 (296)
T ss_dssp             CCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHC-GG--GS--SCCCC------
T ss_pred             CcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccc-cc--cc--ccccc------
Confidence            999999976 68999999888877665444455567899999999999999986311100 00  00  00000      


Q ss_pred             CCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeC-CCC-cceeeeecCCCCCCc
Q 015463          222 PIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG-EKA-GNLEAFAILPGYPDN  299 (406)
Q Consensus       222 ~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g-~~~-~~~~~~~~l~g~pd~  299 (406)
                          ....++|++++++ ++.+.+...+..++++++++|++.+ ++++..++|++|+++. .+. ...+.+....+.|++
T Consensus       149 ----~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~  222 (296)
T 3e5z_A          149 ----ELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDG  222 (296)
T ss_dssp             ----CSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCS
T ss_pred             ----cCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCe
Confidence                1124689999998 7777777788889999999999988 9999889999999862 222 223444224578999


Q ss_pred             eEECCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCCEEEEEECCCCCeeec
Q 015463          300 VRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKA  379 (406)
Q Consensus       300 i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~~  379 (406)
                      +++|++|++||+. .+                                       .|.+++++|+.+..+..+.+     
T Consensus       223 i~~d~~G~l~v~~-~~---------------------------------------~v~~~~~~g~~~~~~~~~~~-----  257 (296)
T 3e5z_A          223 LRVDAGGLIWASA-GD---------------------------------------GVHVLTPDGDELGRVLTPQT-----  257 (296)
T ss_dssp             EEEBTTSCEEEEE-TT---------------------------------------EEEEECTTSCEEEEEECSSC-----
T ss_pred             EEECCCCCEEEEc-CC---------------------------------------eEEEECCCCCEEEEEECCCC-----
Confidence            9999999999999 32                                       27889999999988876554     


Q ss_pred             eeEEEE--eC-CEEEEecCCCCeEEEEeC
Q 015463          380 ISEVEE--KD-GKLWMGSVLMPFVAVYDL  405 (406)
Q Consensus       380 ~s~~~~--~~-g~Ly~Gs~~~~~i~~~~~  405 (406)
                      ++.+..  .+ ++||+++  .+++.++++
T Consensus       258 ~~~~~f~~~d~~~L~v~t--~~~l~~~~~  284 (296)
T 3e5z_A          258 TSNLCFGGPEGRTLYMTV--STEFWSIET  284 (296)
T ss_dssp             CCEEEEESTTSCEEEEEE--TTEEEEEEC
T ss_pred             ceeEEEECCCCCEEEEEc--CCeEEEEEc
Confidence            223322  23 5899998  478999886

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.91  E-value=2.7e-22  Score=188.70  Aligned_cols=247  Identities=14%  Similarity=0.185  Sum_probs=180.0

Q ss_pred             cceeccCcccCcceEEEcCC-CCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEE
Q 015463           60 SEIKFLNQIQGPESMAFDPL-GRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGL  136 (406)
Q Consensus        60 ~~~~~~~~~~gpe~i~~d~~-g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi  136 (406)
                      .+.+......-+|+++++++ +.++|++..+++|++++.+  ....+.                        ....|.++
T Consensus         4 ~~~~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~------------------------~~~~~~~i   59 (297)
T 3g4e_A            4 IECVLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVT------------------------MDAPVSSV   59 (297)
T ss_dssp             EEEEECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE------------------------CSSCEEEE
T ss_pred             EEEEeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEe------------------------CCCceEEE
Confidence            35556677889999999984 6677888899999999987  222221                        02458899


Q ss_pred             EEeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccccccccccc
Q 015463          137 RFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSS  216 (406)
Q Consensus       137 ~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e  216 (406)
                      ++++ +|+||+++ ..+|+++|+++++++.+.....+.+...++++++|++|++|+++......           .... 
T Consensus        60 ~~~~-dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~-----------~~~~-  125 (297)
T 3g4e_A           60 ALRQ-SGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETA-----------PAVL-  125 (297)
T ss_dssp             EEBT-TSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSB-----------TTBC-
T ss_pred             EECC-CCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccc-----------cccc-
Confidence            9998 88999998 57999999999988776654444556789999999999999998431100           0000 


Q ss_pred             CCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee--CCCCcceeeeecC-
Q 015463          217 LNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI--GEKAGNLEAFAIL-  293 (406)
Q Consensus       217 ~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~--g~~~~~~~~~~~l-  293 (406)
                               ....++|++++++ ++...+...+..+||+++++|++.+|++++..++|++|+++  .......+++.+. 
T Consensus       126 ---------~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~  195 (297)
T 3g4e_A          126 ---------ERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLE  195 (297)
T ss_dssp             ---------CTTCEEEEEECTT-SCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECC
T ss_pred             ---------cCCCcEEEEEECC-CCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECC
Confidence                     1235789999986 56666677778899999999999999999988999999974  2222233455443 


Q ss_pred             --CCCCCceEECCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCC-CCEEEEEE
Q 015463          294 --PGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPE-GKILQVLE  370 (406)
Q Consensus       294 --~g~pd~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~  370 (406)
                        .+.|+++++|++|++||+...+.                                      .|.++|++ |+.+..+.
T Consensus       196 ~~~~~p~g~~~d~~G~lwva~~~~~--------------------------------------~v~~~d~~tG~~~~~i~  237 (297)
T 3g4e_A          196 KEEQIPDGMCIDAEGKLWVACYNGG--------------------------------------RVIRLDPVTGKRLQTVK  237 (297)
T ss_dssp             GGGCEEEEEEEBTTSCEEEEEETTT--------------------------------------EEEEECTTTCCEEEEEE
T ss_pred             CCCCCCCeeEECCCCCEEEEEcCCC--------------------------------------EEEEEcCCCceEEEEEE
Confidence              46899999999999999986541                                      27778887 88877776


Q ss_pred             CCCCCeeeceeEEEEe---CCEEEEecCC
Q 015463          371 DSKGKVVKAISEVEEK---DGKLWMGSVL  396 (406)
Q Consensus       371 ~~~g~~~~~~s~~~~~---~g~Ly~Gs~~  396 (406)
                      .+..    .++.+...   .++||+++-.
T Consensus       238 ~p~~----~~t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          238 LPVD----KTTSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             CSSS----BEEEEEEESGGGCEEEEEEBC
T ss_pred             CCCC----CceEEEEeCCCCCEEEEEcCC
Confidence            5432    23444432   3588888753

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.90  E-value=2.4e-21  Score=182.22  Aligned_cols=260  Identities=22%  Similarity=0.301  Sum_probs=182.1

Q ss_pred             cCcccCcceEEEcCCCCeeEEE--------ecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcce
Q 015463           65 LNQIQGPESMAFDPLGRGPYTG--------VADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPL  134 (406)
Q Consensus        65 ~~~~~gpe~i~~d~~g~~ly~g--------~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  134 (406)
                      ..++..||+++++++|+ +|++        +.+++|++++..  ++..+....                  .....+.|.
T Consensus        14 ~~~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~------------------~~~~~~~~~   74 (314)
T 1pjx_A           14 TEDIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPE------------------VNGYGGIPA   74 (314)
T ss_dssp             ECCCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEECCE------------------ETTEECCEE
T ss_pred             hccCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecc------------------cCCCCCCCc
Confidence            55688999999999998 5655        778999999864  444442200                  001135689


Q ss_pred             EEEEeCCC-CcEEEEeCCCcEEEEeCCCCeEEEc-ccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccccccc
Q 015463          135 GLRFDKKT-GDLYIADAYFGLMKVGPEGGLATSL-ATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQ  212 (406)
Q Consensus       135 gi~~d~~~-g~L~Vad~~~gl~~~d~~~~~~~~l-~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~  212 (406)
                      ++++++ + |+|||++...+|+++|++ ++++.+ .....+.+...++++++|++|++|+++........++      . 
T Consensus        75 ~i~~~~-~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~------~-  145 (314)
T 1pjx_A           75 GCQCDR-DANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADY------T-  145 (314)
T ss_dssp             EEEECS-SSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCC------C-
T ss_pred             eEEEec-CCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccc------c-
Confidence            999998 6 999999987899999998 777665 4333334456799999999999999986321000000      0 


Q ss_pred             ccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEe----cCCCEEEEEeCCCCeEEEEEeeC-CCCcce
Q 015463          213 LCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLS----KDKSFFVFCEGSVGRLHKYWLIG-EKAGNL  287 (406)
Q Consensus       213 ~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~----~d~~~l~v~~t~~~~i~~~~~~g-~~~~~~  287 (406)
                       ...         ....++|+++|++ ++.+.+......+++++++    +|++.+|++++..++|++|++++ .+....
T Consensus       146 -~~~---------~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~  214 (314)
T 1pjx_A          146 -RSM---------QEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK  214 (314)
T ss_dssp             -BTT---------SSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE
T ss_pred             -ccc---------cCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccc
Confidence             000         1234689999998 7777666666788999999    99989999998889999999762 222222


Q ss_pred             eeeecCC----CCCCceEECCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCC-
Q 015463          288 EAFAILP----GYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPE-  362 (406)
Q Consensus       288 ~~~~~l~----g~pd~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~-  362 (406)
                      +.+...+    +.|+++++|++|++|++.....                                      .|.++|++ 
T Consensus       215 ~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~--------------------------------------~i~~~d~~~  256 (314)
T 1pjx_A          215 KVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS--------------------------------------HIEVFGPDG  256 (314)
T ss_dssp             EEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT--------------------------------------EEEEECTTC
T ss_pred             eEEEECCCCCCCCCCceEECCCCCEEEEEcCCC--------------------------------------EEEEEcCCC
Confidence            3444433    5689999999999999985431                                      27778888 


Q ss_pred             CCEEEEEECCCCCeeeceeEEEE-eCCE-EEEecCCCCeEEEEeC
Q 015463          363 GKILQVLEDSKGKVVKAISEVEE-KDGK-LWMGSVLMPFVAVYDL  405 (406)
Q Consensus       363 g~~~~~~~~~~g~~~~~~s~~~~-~~g~-Ly~Gs~~~~~i~~~~~  405 (406)
                      |+.+..+..+..    .++.+.. .+|+ ||+++...+.|.++++
T Consensus       257 g~~~~~~~~~~~----~~~~i~~~~dg~~l~v~~~~~~~l~~~~~  297 (314)
T 1pjx_A          257 GQPKMRIRCPFE----KPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             BSCSEEEECSSS----CEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             CcEeEEEeCCCC----CceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence            777666654322    3444443 3554 9999987789999875

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.86  E-value=1.7e-19  Score=172.01  Aligned_cols=243  Identities=19%  Similarity=0.169  Sum_probs=176.0

Q ss_pred             ccceeccCcccCcceEEEcCC-CCeeEEEecCCEEEEEeCC-c-eeEEEeecCCCccccCCCCCcccccccCCcCCcceE
Q 015463           59 NSEIKFLNQIQGPESMAFDPL-GRGPYTGVADGRILFWDGL-K-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLG  135 (406)
Q Consensus        59 ~~~~~~~~~~~gpe~i~~d~~-g~~ly~g~~~g~I~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g  135 (406)
                      +.+.++......+|+++++++ +.++|+++.+++|++++.+ . .+.+. .                       ...|.+
T Consensus        39 ~~~~~~~~~~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~-~-----------------------~~~v~~   94 (326)
T 2ghs_A           39 AGRVLDETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHA-L-----------------------PFMGSA   94 (326)
T ss_dssp             CCEEEECSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE-C-----------------------SSCEEE
T ss_pred             ceEEeeccCCCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE-C-----------------------CCcceE
Confidence            456777777778999999986 5577888889999999976 2 22221 0                       134788


Q ss_pred             EEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccc
Q 015463          136 LRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCS  215 (406)
Q Consensus       136 i~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~  215 (406)
                      +++++ +|++||++ ..||+++|+++++++.+.....+.+...++++++|++|++|+++.....                
T Consensus        95 i~~~~-dg~l~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~----------------  156 (326)
T 2ghs_A           95 LAKIS-DSKQLIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKA----------------  156 (326)
T ss_dssp             EEEEE-TTEEEEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTC----------------
T ss_pred             EEEeC-CCeEEEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcC----------------
Confidence            99998 89999998 4689999999888776543322334457899999999999998742100                


Q ss_pred             cCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee--CC-CCcceeeeec
Q 015463          216 SLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI--GE-KAGNLEAFAI  292 (406)
Q Consensus       216 e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~--g~-~~~~~~~~~~  292 (406)
                                ....++|++++  +++.+.+......++++++++|++.+|++++..++|++++++  +. .....+.+..
T Consensus       157 ----------~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~  224 (326)
T 2ghs_A          157 ----------ETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFID  224 (326)
T ss_dssp             ----------CTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEE
T ss_pred             ----------CCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEE
Confidence                      11246899999  477777666667789999999999999999888899999975  22 2222344443


Q ss_pred             ---CCCCCCceEECCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCCEEEEE
Q 015463          293 ---LPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVL  369 (406)
Q Consensus       293 ---l~g~pd~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~  369 (406)
                         ..+.|+++++|++|++|+++....                                      .|.+++++|+.+..+
T Consensus       225 ~~~~~~~p~gi~~d~~G~lwva~~~~~--------------------------------------~v~~~d~~g~~~~~i  266 (326)
T 2ghs_A          225 STGIKGGMDGSVCDAEGHIWNARWGEG--------------------------------------AVDRYDTDGNHIARY  266 (326)
T ss_dssp             CTTSSSEEEEEEECTTSCEEEEEETTT--------------------------------------EEEEECTTCCEEEEE
T ss_pred             CCCCCCCCCeeEECCCCCEEEEEeCCC--------------------------------------EEEEECCCCCEEEEE
Confidence               346799999999999999985431                                      277888888887777


Q ss_pred             ECCCCCeeeceeEEEEe--C-CEEEEecCCC
Q 015463          370 EDSKGKVVKAISEVEEK--D-GKLWMGSVLM  397 (406)
Q Consensus       370 ~~~~g~~~~~~s~~~~~--~-g~Ly~Gs~~~  397 (406)
                      ..+..    .++++...  + ++||+++...
T Consensus       267 ~~~~~----~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          267 EVPGK----QTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             ECSCS----BEEEEEEESTTSCEEEEEEBCT
T ss_pred             ECCCC----CcEEEEEecCCCCEEEEEecCC
Confidence            65432    34444432  3 5899987654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.85  E-value=3.5e-19  Score=169.16  Aligned_cols=252  Identities=17%  Similarity=0.207  Sum_probs=175.3

Q ss_pred             cCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCC
Q 015463           65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT  142 (406)
Q Consensus        65 ~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~  142 (406)
                      ......||+++++++|+++++++.+++|++++.+  .++.+...                      ....|.+|++++ +
T Consensus        41 ~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~----------------------~~~~~~~i~~~~-d   97 (333)
T 2dg1_A           41 SKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVS----------------------HKANPAAIKIHK-D   97 (333)
T ss_dssp             ESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC----------------------SSSSEEEEEECT-T
T ss_pred             eccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeC----------------------CCCCcceEEECC-C
Confidence            3456789999999999955568888999999876  33333211                      124588999998 8


Q ss_pred             CcEEEEeCCC-----cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccC
Q 015463          143 GDLYIADAYF-----GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSL  217 (406)
Q Consensus       143 g~L~Vad~~~-----gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~  217 (406)
                      |+|||++...     +|+++|++++..+.+....  .....+++++++++|++|+++.....                  
T Consensus        98 g~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~i~~d~~g~l~v~~~~~~~------------------  157 (333)
T 2dg1_A           98 GRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDL--STAYCIDDMVFDSKGGFYFTDFRGYS------------------  157 (333)
T ss_dssp             SCEEEEECTTSSSCCEEEEECTTSCSCEEEECSS--SSCCCEEEEEECTTSCEEEEECCCBT------------------
T ss_pred             CcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccC--ccCCcccceEECCCCCEEEEeccccc------------------
Confidence            9999998765     8999999988765332211  12356889999999999999853100                  


Q ss_pred             CCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeC--CCCcc--eeeeecC
Q 015463          218 NDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG--EKAGN--LEAFAIL  293 (406)
Q Consensus       218 ~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g--~~~~~--~~~~~~l  293 (406)
                              ....++|+++|+++++.+.+......++++++++|++.+|++++..++|++|+++.  .....  ...+...
T Consensus       158 --------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~  229 (333)
T 2dg1_A          158 --------TNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYF  229 (333)
T ss_dssp             --------TBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEEC
T ss_pred             --------cCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEec
Confidence                    12246799999988777776666667899999999999999988778999999852  11111  1222223


Q ss_pred             C--CCCCceEECCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCCEEEEEEC
Q 015463          294 P--GYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLED  371 (406)
Q Consensus       294 ~--g~pd~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~  371 (406)
                      .  ..|+++++|++|++|+++....                                      .|.++|++|+.+..+..
T Consensus       230 ~~~~~~~~i~~d~~G~l~v~~~~~~--------------------------------------~v~~~d~~g~~~~~~~~  271 (333)
T 2dg1_A          230 TGHEGPDSCCIDSDDNLYVAMYGQG--------------------------------------RVLVFNKRGYPIGQILI  271 (333)
T ss_dssp             CSSSEEEEEEEBTTCCEEEEEETTT--------------------------------------EEEEECTTSCEEEEEEC
T ss_pred             CCCCCCCceEECCCCCEEEEEcCCC--------------------------------------EEEEECCCCCEEEEEEc
Confidence            3  3689999999999999985421                                      26778888888887764


Q ss_pred             CCCC--eeeceeEEEE-eC-CEEEEecCCC-----CeEEEEeC
Q 015463          372 SKGK--VVKAISEVEE-KD-GKLWMGSVLM-----PFVAVYDL  405 (406)
Q Consensus       372 ~~g~--~~~~~s~~~~-~~-g~Ly~Gs~~~-----~~i~~~~~  405 (406)
                      +...  ....++.+.. .+ ++||+++...     ..|.++++
T Consensus       272 ~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~  314 (333)
T 2dg1_A          272 PGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG  314 (333)
T ss_dssp             TTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred             CCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEec
Confidence            4210  0112333333 34 5899988653     26777764

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.84  E-value=9.2e-19  Score=165.33  Aligned_cols=185  Identities=20%  Similarity=0.160  Sum_probs=139.1

Q ss_pred             cCcceEEEcCCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEE
Q 015463           69 QGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~V  147 (406)
                      ..||+++++++|+++++...+++|++++.+ ....+..                       ..+.|.||++++ +|+|||
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~-----------------------~~~~p~gia~~~-dG~l~v   87 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHAT-----------------------VEGKVSGLAFTS-NGDLVA   87 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEE-----------------------CSSEEEEEEECT-TSCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEe-----------------------CCCCceeEEEcC-CCcEEE
Confidence            689999999999955556688999999987 4333221                       135699999998 899999


Q ss_pred             EeCC-C--cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCc
Q 015463          148 ADAY-F--GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIK  224 (406)
Q Consensus       148 ad~~-~--gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  224 (406)
                      ++.. +  .|++++..+++++.+....   ...++++++..+++++|++++.                            
T Consensus        88 ad~~~~~~~v~~~d~~~g~~~~~~~~~---~~~~~~g~~~~~~~~~~v~d~~----------------------------  136 (306)
T 2p4o_A           88 TGWNADSIPVVSLVKSDGTVETLLTLP---DAIFLNGITPLSDTQYLTADSY----------------------------  136 (306)
T ss_dssp             EEECTTSCEEEEEECTTSCEEEEEECT---TCSCEEEEEESSSSEEEEEETT----------------------------
T ss_pred             EeccCCcceEEEEcCCCCeEEEEEeCC---CccccCcccccCCCcEEEEECC----------------------------
Confidence            9965 2  3999998888776654331   1345778888888889999853                            


Q ss_pred             ccCCCCeEEEEeCCCCeEEEe-----------cccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeC-CCCcceeeeec
Q 015463          225 ITKDTGRVLKYDPTTKQTTVL-----------LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG-EKAGNLEAFAI  292 (406)
Q Consensus       225 ~~~~~g~l~~~d~~t~~~~~~-----------~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g-~~~~~~~~~~~  292 (406)
                          .|+|+++|+.+++.++.           ...+..+|||  ++|++.+|++++..++|++|++++ .+.+..+.+..
T Consensus       137 ----~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~  210 (306)
T 2p4o_A          137 ----RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE  210 (306)
T ss_dssp             ----TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE
T ss_pred             ----CCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec
Confidence                37899999986643322           1345678998  889999999999999999999875 23344455554


Q ss_pred             CCCCCCceEECCCCCEEEEEccC
Q 015463          293 LPGYPDNVRTNEKGEFWVAIHCR  315 (406)
Q Consensus       293 l~g~pd~i~~d~~G~lwv~~~~~  315 (406)
                      . ..|+++++|++|++||+....
T Consensus       211 ~-~~P~gi~vd~dG~l~va~~~~  232 (306)
T 2p4o_A          211 Q-TNIDDFAFDVEGNLYGATHIY  232 (306)
T ss_dssp             S-CCCSSEEEBTTCCEEEECBTT
T ss_pred             c-CCCCCeEECCCCCEEEEeCCC
Confidence            4 469999999999999998654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.82  E-value=1.4e-17  Score=154.63  Aligned_cols=244  Identities=16%  Similarity=0.280  Sum_probs=169.0

Q ss_pred             cCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC-ce-eEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCC
Q 015463           65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL-KW-TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT  142 (406)
Q Consensus        65 ~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~  142 (406)
                      .+++..|.+++++++|++++++..+++|.+++.+ .. ..+....                 ........|.+++++..+
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~-----------------~~~~~~~~p~~i~~~~~~   88 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECG-----------------KRDSQLLYPNRVAVVRNS   88 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBS-----------------SSTTCBSSEEEEEEETTT
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccC-----------------CCcccccCceEEEEEcCC
Confidence            4567899999999999944445778999999877 32 2221100                 001113468999995338


Q ss_pred             CcEEEEeC--CCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCC
Q 015463          143 GDLYIADA--YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDP  220 (406)
Q Consensus       143 g~L~Vad~--~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~  220 (406)
                      |+|||++.  ...|.++++++..+..+..    .....|++++++++|++|+++..                        
T Consensus        89 g~l~v~~~~~~~~i~~~d~~g~~~~~~~~----~~~~~~~~i~~~~~g~l~v~~~~------------------------  140 (286)
T 1q7f_A           89 GDIIVTERSPTHQIQIYNQYGQFVRKFGA----TILQHPRGVTVDNKGRIIVVECK------------------------  140 (286)
T ss_dssp             TEEEEEECGGGCEEEEECTTSCEEEEECT----TTCSCEEEEEECTTSCEEEEETT------------------------
T ss_pred             CeEEEEcCCCCCEEEEECCCCcEEEEecC----ccCCCceEEEEeCCCCEEEEECC------------------------
Confidence            99999995  4789999977655444321    23456899999999999999853                        


Q ss_pred             CCCcccCCCCeEEEEeCCCCeEEEec--ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecC--CCC
Q 015463          221 SPIKITKDTGRVLKYDPTTKQTTVLL--RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAIL--PGY  296 (406)
Q Consensus       221 ~~~~~~~~~g~l~~~d~~t~~~~~~~--~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l--~g~  296 (406)
                              .++|++||+++.....+.  ..+..|+++++++|++ +|+++...++|.+|+.++.   ....+...  ...
T Consensus       141 --------~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~---~~~~~~~~g~~~~  208 (286)
T 1q7f_A          141 --------VMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQE-IFISDNRAHCVKVFNYEGQ---YLRQIGGEGITNY  208 (286)
T ss_dssp             --------TTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSE-EEEEEGGGTEEEEEETTCC---EEEEESCTTTSCS
T ss_pred             --------CCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCC-EEEEECCCCEEEEEcCCCC---EEEEEccCCccCC
Confidence                    367999998755555443  3456789999999886 8899887889999997542   11222211  145


Q ss_pred             CCceEECCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCCEEEEEECCCCCe
Q 015463          297 PDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKV  376 (406)
Q Consensus       297 pd~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~  376 (406)
                      |.++++|++|++||+.....                                     ..|..++++|+.+..+...... 
T Consensus       209 p~~i~~d~~G~l~v~~~~~~-------------------------------------~~i~~~~~~g~~~~~~~~~~~~-  250 (286)
T 1q7f_A          209 PIGVGINSNGEILIADNHNN-------------------------------------FNLTIFTQDGQLISALESKVKH-  250 (286)
T ss_dssp             EEEEEECTTCCEEEEECSSS-------------------------------------CEEEEECTTSCEEEEEEESSCC-
T ss_pred             CcEEEECCCCCEEEEeCCCC-------------------------------------EEEEEECCCCCEEEEEcccCCC-
Confidence            88999999999999985431                                     1277789999988887643221 


Q ss_pred             eeceeEE-EEeCCEEEEecCCCCeEEEEeC
Q 015463          377 VKAISEV-EEKDGKLWMGSVLMPFVAVYDL  405 (406)
Q Consensus       377 ~~~~s~~-~~~~g~Ly~Gs~~~~~i~~~~~  405 (406)
                       .....+ ...+|+||+.+. ++.|.++++
T Consensus       251 -~~~~~i~~~~~g~l~vs~~-~~~v~v~~~  278 (286)
T 1q7f_A          251 -AQCFDVALMDDGSVVLASK-DYRLYIYRY  278 (286)
T ss_dssp             -SCEEEEEEETTTEEEEEET-TTEEEEEEC
T ss_pred             -CcceeEEECCCCcEEEECC-CCeEEEEEc
Confidence             123333 345789999975 678887764

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.80  E-value=1.4e-17  Score=152.88  Aligned_cols=233  Identities=21%  Similarity=0.258  Sum_probs=163.5

Q ss_pred             CcceEEEcCCCCeeEE-E-ecCCEEEEEeCCc-eeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEE
Q 015463           70 GPESMAFDPLGRGPYT-G-VADGRILFWDGLK-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~-g-~~~g~I~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~  146 (406)
                      .|++++++++|+ +|+ + ..+++|++++... ..... .                    ......|.+|++++ +|+||
T Consensus        25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~-~--------------------~~~~~~p~~i~~~~-~g~l~   81 (270)
T 1rwi_B           25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVL-P--------------------FNGLYQPQGLAVDG-AGTVY   81 (270)
T ss_dssp             CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EEC-C--------------------CCSCCSCCCEEECT-TCCEE
T ss_pred             CccceEECCCCC-EEEEccCCCCcEEEecCCCcccceE-e--------------------eCCcCCcceeEECC-CCCEE
Confidence            999999999999 777 6 6778999998762 11110 0                    01124688999998 78999


Q ss_pred             EEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCccc
Q 015463          147 IADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKIT  226 (406)
Q Consensus       147 Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~  226 (406)
                      |++..++|+++|++++....+..    ..+..|.+++++++|++|+++..                              
T Consensus        82 v~~~~~~i~~~d~~~~~~~~~~~----~~~~~p~~i~~~~~g~l~v~~~~------------------------------  127 (270)
T 1rwi_B           82 VTDFNNRVVTLAAGSNNQTVLPF----DGLNYPEGLAVDTQGAVYVADRG------------------------------  127 (270)
T ss_dssp             EEETTTEEEEECTTCSCCEECCC----CSCSSEEEEEECTTCCEEEEEGG------------------------------
T ss_pred             EEcCCCEEEEEeCCCceEeeeec----CCcCCCcceEECCCCCEEEEECC------------------------------
Confidence            99986689999998876554321    12356889999999999999853                              


Q ss_pred             CCCCeEEEEeCCCCeEEEe-cccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee-cCCCCCCceEECC
Q 015463          227 KDTGRVLKYDPTTKQTTVL-LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPGYPDNVRTNE  304 (406)
Q Consensus       227 ~~~g~l~~~d~~t~~~~~~-~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~-~l~g~pd~i~~d~  304 (406)
                        .++|++++..+...... ...+..+++++++++++ +|+++...++|.+++.++..   ..... .....|.++++|+
T Consensus       128 --~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~---~~~~~~~~~~~p~~i~~d~  201 (270)
T 1rwi_B          128 --NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNN---QVVLPFTDITAPWGIAVDE  201 (270)
T ss_dssp             --GTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC-EEEEEGGGTEEEEECTTTCC---EEECCCSSCCSEEEEEECT
T ss_pred             --CCEEEEEECCCceeEeeccccCCCceeEEEeCCCC-EEEEECCCCEEEEEecCCCc---eEeecccCCCCceEEEECC
Confidence              26799998765544332 23456789999999987 89998877899999876432   11111 1114588999999


Q ss_pred             CCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCCEEEEEECCCCCeeeceeEEE
Q 015463          305 KGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVE  384 (406)
Q Consensus       305 ~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~~~s~~~  384 (406)
                      +|++|++.....                                      .+.+++++++...... ..+  ......+.
T Consensus       202 ~g~l~v~~~~~~--------------------------------------~v~~~~~~~~~~~~~~-~~~--~~~p~~i~  240 (270)
T 1rwi_B          202 AGTVYVTEHNTN--------------------------------------QVVKLLAGSTTSTVLP-FTG--LNTPLAVA  240 (270)
T ss_dssp             TCCEEEEETTTS--------------------------------------CEEEECTTCSCCEECC-CCS--CSCEEEEE
T ss_pred             CCCEEEEECCCC--------------------------------------cEEEEcCCCCcceeec-cCC--CCCceeEE
Confidence            999999986431                                      2677888876554432 122  12345554


Q ss_pred             E-eCCEEEEecCCCCeEEEEeCC
Q 015463          385 E-KDGKLWMGSVLMPFVAVYDLS  406 (406)
Q Consensus       385 ~-~~g~Ly~Gs~~~~~i~~~~~~  406 (406)
                      . .+|+||++...++.|.++++.
T Consensus       241 ~~~~g~l~v~~~~~~~v~~~~~~  263 (270)
T 1rwi_B          241 VDSDRTVYVADRGNDRVVKLTSL  263 (270)
T ss_dssp             ECTTCCEEEEEGGGTEEEEECCC
T ss_pred             ECCCCCEEEEECCCCEEEEEcCC
Confidence            4 468999999989999998863

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.79  E-value=2.1e-16  Score=146.82  Aligned_cols=234  Identities=14%  Similarity=0.191  Sum_probs=163.8

Q ss_pred             CcccCcceEEEcCCCCeeEEEe-cCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC
Q 015463           66 NQIQGPESMAFDPLGRGPYTGV-ADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (406)
Q Consensus        66 ~~~~gpe~i~~d~~g~~ly~g~-~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g  143 (406)
                      .....|++|++|++|+ +|++. .+++|.+++.+ .+..+...                     .....|.+|++++ +|
T Consensus        17 ~~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~~~~~~~~~~---------------------~~~~~~~~i~~~~-~g   73 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGK-VWFTQHKANKISSLDQSGRIKEFEVP---------------------TPDAKVMCLIVSS-LG   73 (300)
T ss_dssp             STTCCEEEEEECTTSC-EEEEETTTTEEEEECTTSCEEEEECS---------------------STTCCEEEEEECT-TS
T ss_pred             CCCCCcceeeECCCCC-EEEEcCCCCeEEEECCCCceEEEECC---------------------CCCCcceeEEECC-CC
Confidence            4567999999999999 77766 57899999887 44433211                     1135689999998 89


Q ss_pred             cEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCC
Q 015463          144 DLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSP  222 (406)
Q Consensus       144 ~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  222 (406)
                      ++|+++.. ++|+++|++ ++...+....   ....+.+++++++|++|+++..                          
T Consensus        74 ~l~v~~~~~~~v~~~d~~-g~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~--------------------------  123 (300)
T 2qc5_A           74 DIWFTENGANKIGKLSKK-GGFTEYPLPQ---PDSGPYGITEGLNGDIWFTQLN--------------------------  123 (300)
T ss_dssp             CEEEEETTTTEEEEECTT-SCEEEEECSS---TTCCEEEEEECSTTCEEEEETT--------------------------
T ss_pred             CEEEEecCCCeEEEECCC-CCeEEecCCC---CCCCCccceECCCCCEEEEccC--------------------------
Confidence            99999975 579999998 5555432211   1256889999999999999853                          


Q ss_pred             CcccCCCCeEEEEeCCCCeEEEec--ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee--cCCCCCC
Q 015463          223 IKITKDTGRVLKYDPTTKQTTVLL--RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA--ILPGYPD  298 (406)
Q Consensus       223 ~~~~~~~g~l~~~d~~t~~~~~~~--~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~--~l~g~pd  298 (406)
                            .++|+++|++ ++...+.  .....+++++++++++ +|+++...++|++++..+    ....+.  .....|.
T Consensus       124 ------~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~~g----~~~~~~~~~~~~~~~  191 (300)
T 2qc5_A          124 ------GDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRITNTG----KLEEYPLPTNAAAPV  191 (300)
T ss_dssp             ------TTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECTTC----CEEEEECSSTTCCEE
T ss_pred             ------CCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCC-EEEEecCCCeEEEECCCC----cEEEeeCCCCCCCcc
Confidence                  2679999998 6665442  2456789999999987 889988778999998632    222222  1123578


Q ss_pred             ceEECCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCCEEEEEECCCCCeee
Q 015463          299 NVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVK  378 (406)
Q Consensus       299 ~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~  378 (406)
                      ++++|++|++|++.....                                      .+.+++++|+..... .+.+.  .
T Consensus       192 ~i~~d~~g~l~v~~~~~~--------------------------------------~i~~~~~~g~~~~~~-~~~~~--~  230 (300)
T 2qc5_A          192 GITSGNDGALWFVEIMGN--------------------------------------KIGRITTTGEISEYD-IPTPN--A  230 (300)
T ss_dssp             EEEECTTSSEEEEETTTT--------------------------------------EEEEECTTCCEEEEE-CSSTT--C
T ss_pred             eEEECCCCCEEEEccCCC--------------------------------------EEEEEcCCCcEEEEE-CCCCC--C
Confidence            899999999999986431                                      266677776655432 22221  2


Q ss_pred             ceeEEEE-eCCEEEEecCCCCeEEEEeC
Q 015463          379 AISEVEE-KDGKLWMGSVLMPFVAVYDL  405 (406)
Q Consensus       379 ~~s~~~~-~~g~Ly~Gs~~~~~i~~~~~  405 (406)
                      .+..+.. .+|+||+++...+.|.+++.
T Consensus       231 ~~~~i~~d~~g~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          231 RPHAITAGKNSEIWFTEWGANQIGRITN  258 (300)
T ss_dssp             CEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred             CceEEEECCCCCEEEeccCCCeEEEECC
Confidence            3344443 46788888877788888764

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.78  E-value=8.6e-17  Score=159.24  Aligned_cols=241  Identities=14%  Similarity=0.122  Sum_probs=167.7

Q ss_pred             cccCcceEEEcCC---CCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC
Q 015463           67 QIQGPESMAFDPL---GRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK  141 (406)
Q Consensus        67 ~~~gpe~i~~d~~---g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~  141 (406)
                      ++..|++|++|++   |+ ||+....++|++++..  .++.+..                       ...+|.+|++++ 
T Consensus       137 ~~~~P~gvavd~~s~~g~-Lyv~D~~~~I~~id~~~g~v~~~~~-----------------------~~~~P~giavd~-  191 (433)
T 4hw6_A          137 AFDNIWRMMFDPNSNYDD-LYWVGQRDAFRHVDFVNQYVDIKTT-----------------------NIGQCADVNFTL-  191 (433)
T ss_dssp             CCSCCCEEEECTTTTTCE-EEEECBTSCEEEEETTTTEEEEECC-----------------------CCSCEEEEEECT-
T ss_pred             ccCCCceEEEccccCCCE-EEEEeCCCCEEEEECCCCEEEEeec-----------------------CCCCccEEEECC-
Confidence            6789999999984   66 7766554899999985  4443321                       135699999999 


Q ss_pred             CCcEEEEeCC-----CcEEEEeCCCCeEEEcccccCCcccccccceEEcC-CCCEEEEeCCCchhhhccccccccccccc
Q 015463          142 TGDLYIADAY-----FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKENIPLQLCS  215 (406)
Q Consensus       142 ~g~L~Vad~~-----~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~~  215 (406)
                      +|+|||++..     .+++.++..++....  ...  ..+..|+++++|+ +|+||+++..                   
T Consensus       192 dG~lyVad~~~~~~~~gv~~~~~~~~~~~~--~~~--~~~~~P~giavd~~~G~lyv~d~~-------------------  248 (433)
T 4hw6_A          192 NGDMVVVDDQSSDTNTGIYLFTRASGFTER--LSL--CNARGAKTCAVHPQNGKIYYTRYH-------------------  248 (433)
T ss_dssp             TCCEEEEECCSCTTSEEEEEECGGGTTCCE--EEE--EECSSBCCCEECTTTCCEEECBTT-------------------
T ss_pred             CCCEEEEcCCCCcccceEEEEECCCCeecc--ccc--cccCCCCEEEEeCCCCeEEEEECC-------------------
Confidence            7889999973     367778765443210  000  1356899999999 8999999854                   


Q ss_pred             cCCCCCCCcccCCCCeEEEEeCCCCeE-EEec--ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCC--CCcceeee
Q 015463          216 SLNDPSPIKITKDTGRVLKYDPTTKQT-TVLL--RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE--KAGNLEAF  290 (406)
Q Consensus       216 e~~~~~~~~~~~~~g~l~~~d~~t~~~-~~~~--~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~--~~~~~~~~  290 (406)
                                   .++|+++|++++.. +.+.  .....+.++++++|++.+|++++..++|++++.++.  .......+
T Consensus       249 -------------~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~  315 (433)
T 4hw6_A          249 -------------HAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIV  315 (433)
T ss_dssp             -------------CSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEE
T ss_pred             -------------CCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEE
Confidence                         37899999987776 3332  222345689999999999999999999999987632  11112222


Q ss_pred             ec---CCC------------CCCceEE---------CCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeE
Q 015463          291 AI---LPG------------YPDNVRT---------NEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLI  346 (406)
Q Consensus       291 ~~---l~g------------~pd~i~~---------d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  346 (406)
                      ..   ..|            .|.++++         |.+|+|||+....+                              
T Consensus       316 ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~------------------------------  365 (433)
T 4hw6_A          316 CGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSH------------------------------  365 (433)
T ss_dssp             EECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTT------------------------------
T ss_pred             EecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCC------------------------------
Confidence            21   112            3777999         99999999986542                              


Q ss_pred             eecCcceEEEEEECCCCCEEEEEECC--------CC-----CeeeceeEEEE--eCCEEEEecCCCCeEEEEeCC
Q 015463          347 HVGGRLHAMAVKYSPEGKILQVLEDS--------KG-----KVVKAISEVEE--KDGKLWMGSVLMPFVAVYDLS  406 (406)
Q Consensus       347 ~~~~~~~~~v~~~d~~g~~~~~~~~~--------~g-----~~~~~~s~~~~--~~g~Ly~Gs~~~~~i~~~~~~  406 (406)
                              .|.+++++|.+.......        +|     ..+.....+..  .+|+||+....++.|.+++++
T Consensus       366 --------~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          366 --------TVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             --------EEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             --------EEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence                    367788888665554321        11     01233455554  489999999999999998864

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.77  E-value=8e-16  Score=142.76  Aligned_cols=234  Identities=12%  Similarity=0.210  Sum_probs=159.3

Q ss_pred             CcccCcceEEEcCCCCeeEEEec-CCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC
Q 015463           66 NQIQGPESMAFDPLGRGPYTGVA-DGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (406)
Q Consensus        66 ~~~~gpe~i~~d~~g~~ly~g~~-~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g  143 (406)
                      .....|.+|++|++|+ +|+++. +++|.+++.+ .+..+...                     .....|.+|++++ +|
T Consensus        12 ~~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~~~~~~~~~~---------------------~~~~~~~~i~~~~-~g   68 (299)
T 2z2n_A           12 NQDTGPYGITVSDKGK-VWITQHKANMISCINLDGKITEYPLP---------------------TPDAKVMCLTISS-DG   68 (299)
T ss_dssp             SSSCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCEEEEECS---------------------STTCCEEEEEECT-TS
T ss_pred             CcCCCccceEECCCCC-EEEEecCCCcEEEEcCCCCeEEecCC---------------------cccCceeeEEECC-CC
Confidence            3456899999999999 787776 6899999876 43333211                     0135689999998 89


Q ss_pred             cEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCC
Q 015463          144 DLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSP  222 (406)
Q Consensus       144 ~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  222 (406)
                      ++|+++.. ++|++++++ ++++.+...   .....+.+++++++|++|+++..                          
T Consensus        69 ~l~v~~~~~~~i~~~~~~-g~~~~~~~~---~~~~~~~~i~~~~~g~l~v~~~~--------------------------  118 (299)
T 2z2n_A           69 EVWFTENAANKIGRITKK-GIIKEYTLP---NPDSAPYGITEGPNGDIWFTEMN--------------------------  118 (299)
T ss_dssp             CEEEEETTTTEEEEECTT-SCEEEEECS---STTCCEEEEEECTTSCEEEEETT--------------------------
T ss_pred             CEEEeCCCCCeEEEECCC-CcEEEEeCC---CcCCCceeeEECCCCCEEEEecC--------------------------
Confidence            99999874 579999987 445443311   12346889999999999999753                          


Q ss_pred             CcccCCCCeEEEEeCCCCeEEEec--ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee--cCCCCCC
Q 015463          223 IKITKDTGRVLKYDPTTKQTTVLL--RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA--ILPGYPD  298 (406)
Q Consensus       223 ~~~~~~~g~l~~~d~~t~~~~~~~--~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~--~l~g~pd  298 (406)
                            .++|+++|+ +++...+.  .....+++++++++++ +|+++...++|++++..    +....+.  .....|.
T Consensus       119 ------~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~----g~~~~~~~~~~~~~~~  186 (299)
T 2z2n_A          119 ------GNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNA-LWFTENQNNAIGRITES----GDITEFKIPTPASGPV  186 (299)
T ss_dssp             ------TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT----CCEEEEECSSTTCCEE
T ss_pred             ------CceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCC-EEEEeCCCCEEEEEcCC----CcEEEeeCCCCCCcce
Confidence                  367999999 56665442  2345688999999884 78888777899999863    2222221  1123477


Q ss_pred             ceEECCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCCEEEEEECCCCCeee
Q 015463          299 NVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVK  378 (406)
Q Consensus       299 ~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~  378 (406)
                      ++++|++|++|++.....                                      .+.+++++|+... +..+...  .
T Consensus       187 ~i~~~~~g~l~v~~~~~~--------------------------------------~i~~~~~~g~~~~-~~~~~~~--~  225 (299)
T 2z2n_A          187 GITKGNDDALWFVEIIGN--------------------------------------KIGRITTSGEITE-FKIPTPN--A  225 (299)
T ss_dssp             EEEECTTSSEEEEETTTT--------------------------------------EEEEECTTCCEEE-EECSSTT--C
T ss_pred             eEEECCCCCEEEEccCCc--------------------------------------eEEEECCCCcEEE-EECCCCC--C
Confidence            899999999999985431                                      2566677655433 3222111  1


Q ss_pred             ceeEEEE-eCCEEEEecCCCCeEEEEeC
Q 015463          379 AISEVEE-KDGKLWMGSVLMPFVAVYDL  405 (406)
Q Consensus       379 ~~s~~~~-~~g~Ly~Gs~~~~~i~~~~~  405 (406)
                      .+..+.. .+|+||+++...+.|.+++.
T Consensus       226 ~~~~i~~~~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          226 RPHAITAGAGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             CEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred             CceeEEECCCCCEEEeccCCceEEEECC
Confidence            3344443 45778888766777777764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.77  E-value=3.4e-16  Score=145.25  Aligned_cols=231  Identities=10%  Similarity=0.144  Sum_probs=162.2

Q ss_pred             ccCcceEEEcCCCCeeEEEec-CCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcE
Q 015463           68 IQGPESMAFDPLGRGPYTGVA-DGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL  145 (406)
Q Consensus        68 ~~gpe~i~~d~~g~~ly~g~~-~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L  145 (406)
                      ...|.+++++++|+ +|++.. +++|++++.+ .++.+...                     .....|.+|++++ +|+|
T Consensus        56 ~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~~~~~~~~---------------------~~~~~~~~i~~~~-~g~l  112 (299)
T 2z2n_A           56 DAKVMCLTISSDGE-VWFTENAANKIGRITKKGIIKEYTLP---------------------NPDSAPYGITEGP-NGDI  112 (299)
T ss_dssp             TCCEEEEEECTTSC-EEEEETTTTEEEEECTTSCEEEEECS---------------------STTCCEEEEEECT-TSCE
T ss_pred             cCceeeEEECCCCC-EEEeCCCCCeEEEECCCCcEEEEeCC---------------------CcCCCceeeEECC-CCCE
Confidence            46799999999999 677655 7889999976 44443211                     0134689999998 8999


Q ss_pred             EEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCc
Q 015463          146 YIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIK  224 (406)
Q Consensus       146 ~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  224 (406)
                      |+++.. .+|+++|+ +++...+...   .....+++++++++|++|+++..                            
T Consensus       113 ~v~~~~~~~i~~~d~-~g~~~~~~~~---~~~~~~~~i~~~~~g~l~v~~~~----------------------------  160 (299)
T 2z2n_A          113 WFTEMNGNRIGRITD-DGKIREYELP---NKGSYPSFITLGSDNALWFTENQ----------------------------  160 (299)
T ss_dssp             EEEETTTTEEEEECT-TCCEEEEECS---STTCCEEEEEECTTSCEEEEETT----------------------------
T ss_pred             EEEecCCceEEEECC-CCCEEEecCC---CCCCCCceEEEcCCCCEEEEeCC----------------------------
Confidence            999865 67999999 5555443221   12346889999999999999753                            


Q ss_pred             ccCCCCeEEEEeCCCCeEEEe--cccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee-c-CCCCCCce
Q 015463          225 ITKDTGRVLKYDPTTKQTTVL--LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-I-LPGYPDNV  300 (406)
Q Consensus       225 ~~~~~g~l~~~d~~t~~~~~~--~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~-~-l~g~pd~i  300 (406)
                          .++|+++|+ +++...+  ......+.+++++++++ +|+++...++|.+++..+    ....+. . ....|.++
T Consensus       161 ----~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g----~~~~~~~~~~~~~~~~i  230 (299)
T 2z2n_A          161 ----NNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDA-LWFVEIIGNKIGRITTSG----EITEFKIPTPNARPHAI  230 (299)
T ss_dssp             ----TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECTTC----CEEEEECSSTTCCEEEE
T ss_pred             ----CCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCC-EEEEccCCceEEEECCCC----cEEEEECCCCCCCceeE
Confidence                367999999 6776654  23456688999999886 888887778999998632    222221 1 12457889


Q ss_pred             EECCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCCEEEEEECCCCCeeece
Q 015463          301 RTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAI  380 (406)
Q Consensus       301 ~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~~~  380 (406)
                      ++|++|++|++....                                      ..+.+++++|+. ..+..+.+.  ..+
T Consensus       231 ~~~~~g~l~v~~~~~--------------------------------------~~i~~~d~~g~~-~~~~~~~~~--~~~  269 (299)
T 2z2n_A          231 TAGAGIDLWFTEWGA--------------------------------------NKIGRLTSNNII-EEYPIQIKS--AEP  269 (299)
T ss_dssp             EECSTTCEEEEETTT--------------------------------------TEEEEEETTTEE-EEEECSSSS--CCE
T ss_pred             EECCCCCEEEeccCC--------------------------------------ceEEEECCCCce-EEEeCCCCC--Ccc
Confidence            999999999998442                                      126778887653 444333221  123


Q ss_pred             eEEEEeCCEEEEecCCCCeEEEEeC
Q 015463          381 SEVEEKDGKLWMGSVLMPFVAVYDL  405 (406)
Q Consensus       381 s~~~~~~g~Ly~Gs~~~~~i~~~~~  405 (406)
                      ..+...+|+||+++. .+++.+++.
T Consensus       270 ~~i~~~~g~l~v~~~-~~~l~~~~~  293 (299)
T 2z2n_A          270 HGICFDGETIWFAME-CDKIGKLTL  293 (299)
T ss_dssp             EEEEECSSCEEEEET-TTEEEEEEE
T ss_pred             ceEEecCCCEEEEec-CCcEEEEEc
Confidence            444347899999976 689999875

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.77  E-value=8.8e-17  Score=154.16  Aligned_cols=200  Identities=15%  Similarity=0.167  Sum_probs=133.9

Q ss_pred             cCcceEEEcCCCCeeEEEec---CC--EEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC
Q 015463           69 QGPESMAFDPLGRGPYTGVA---DG--RILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~---~g--~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g  143 (406)
                      ..|++++++++|+ +|++..   ++  +|++++......|....   ...|             .....|++|++|+ +|
T Consensus        17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~---~~~~-------------~~~~~p~gv~~d~-~g   78 (343)
T 2qe8_A           17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLIPFPPQS---GNAI-------------ITFDTVLGIKSDG-NG   78 (343)
T ss_dssp             SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEEESCCCC---SSCC-------------CCCSCEEEEEECS-SS
T ss_pred             CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCeecCCCcc---cCcc-------------cceeEeeEEEEcC-CC
Confidence            5899999999999 676632   34  78888722433332100   0001             1246799999999 79


Q ss_pred             cEEEEeCC------CcEEEEeCCCCeE-EEcccc-cCCcccccccceEEcC-CCCEEEEeCCCchhhhcccccccccccc
Q 015463          144 DLYIADAY------FGLMKVGPEGGLA-TSLATE-AEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKENIPLQLC  214 (406)
Q Consensus       144 ~L~Vad~~------~gl~~~d~~~~~~-~~l~~~-~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~  214 (406)
                      +|||+|..      ..|+++|++++++ +.+... ....+..+++++++|+ +|.+|+++++.                 
T Consensus        79 ~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~-----------------  141 (343)
T 2qe8_A           79 IVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAP-----------------  141 (343)
T ss_dssp             EEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCS-----------------
T ss_pred             cEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCcc-----------------
Confidence            99999975      5899999998874 333211 1123345789999996 57999998641                 


Q ss_pred             ccCCCCCCCcccCCCCeEEEEeCCCCeEEEeccc------------------------------CCCcceEEEecCCCEE
Q 015463          215 SSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRN------------------------------LQFPNGLSLSKDKSFF  264 (406)
Q Consensus       215 ~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~------------------------------~~~~ngi~l~~d~~~l  264 (406)
                                  ...++|++||+++++...+..+                              ...++||++++|++.+
T Consensus       142 ------------~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~l  209 (343)
T 2qe8_A          142 ------------DDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWL  209 (343)
T ss_dssp             ------------GGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEE
T ss_pred             ------------CCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEE
Confidence                        0125677777776665443321                              0246899999999999


Q ss_pred             EEEeCCCCeEEEEEeeC---CCCcceeee---e--cCCCCCCceEECCCCCEEEEEccC
Q 015463          265 VFCEGSVGRLHKYWLIG---EKAGNLEAF---A--ILPGYPDNVRTNEKGEFWVAIHCR  315 (406)
Q Consensus       265 ~v~~t~~~~i~~~~~~g---~~~~~~~~~---~--~l~g~pd~i~~d~~G~lwv~~~~~  315 (406)
                      |++++...++++++...   ......+++   .  ...+.|+++++|++|++|++....
T Consensus       210 y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~  268 (343)
T 2qe8_A          210 YLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAH  268 (343)
T ss_dssp             EEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGG
T ss_pred             EEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCC
Confidence            99999888999998541   111111111   1  123579999999999999998654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.77  E-value=3.5e-16  Score=145.23  Aligned_cols=231  Identities=13%  Similarity=0.207  Sum_probs=163.0

Q ss_pred             cccCcceEEEcCCCCeeEEEec-CCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc
Q 015463           67 QIQGPESMAFDPLGRGPYTGVA-DGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (406)
Q Consensus        67 ~~~gpe~i~~d~~g~~ly~g~~-~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~  144 (406)
                      ....|.+|+++++|+ +|++.. +++|++++.+ .+..+...                     .....|.+|++++ +|+
T Consensus        60 ~~~~~~~i~~~~~g~-l~v~~~~~~~v~~~d~~g~~~~~~~~---------------------~~~~~~~~i~~~~-~g~  116 (300)
T 2qc5_A           60 PDAKVMCLIVSSLGD-IWFTENGANKIGKLSKKGGFTEYPLP---------------------QPDSGPYGITEGL-NGD  116 (300)
T ss_dssp             TTCCEEEEEECTTSC-EEEEETTTTEEEEECTTSCEEEEECS---------------------STTCCEEEEEECS-TTC
T ss_pred             CCCcceeEEECCCCC-EEEEecCCCeEEEECCCCCeEEecCC---------------------CCCCCCccceECC-CCC
Confidence            346899999999999 676655 6889999877 44333211                     0125689999998 899


Q ss_pred             EEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCC
Q 015463          145 LYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPI  223 (406)
Q Consensus       145 L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  223 (406)
                      ||+++.. ++|++++++ +++..+...   .....+++++++++|++|+++..                           
T Consensus       117 l~v~~~~~~~i~~~~~~-g~~~~~~~~---~~~~~~~~i~~d~~g~l~v~~~~---------------------------  165 (300)
T 2qc5_A          117 IWFTQLNGDRIGKLTAD-GTIYEYDLP---NKGSYPAFITLGSDNALWFTENQ---------------------------  165 (300)
T ss_dssp             EEEEETTTTEEEEECTT-SCEEEEECS---STTCCEEEEEECTTSSEEEEETT---------------------------
T ss_pred             EEEEccCCCeEEEECCC-CCEEEccCC---CCCCCceeEEECCCCCEEEEecC---------------------------
Confidence            9999974 689999998 555543211   12457889999999999999853                           


Q ss_pred             cccCCCCeEEEEeCCCCeEEEec--ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee--cCCCCCCc
Q 015463          224 KITKDTGRVLKYDPTTKQTTVLL--RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA--ILPGYPDN  299 (406)
Q Consensus       224 ~~~~~~g~l~~~d~~t~~~~~~~--~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~--~l~g~pd~  299 (406)
                           .++|+++|+ +++...+.  .....+.+++++++++ +|+++...++|.+++..+    ....+.  .....|.+
T Consensus       166 -----~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~~g----~~~~~~~~~~~~~~~~  234 (300)
T 2qc5_A          166 -----NNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGA-LWFVEIMGNKIGRITTTG----EISEYDIPTPNARPHA  234 (300)
T ss_dssp             -----TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECTTC----CEEEEECSSTTCCEEE
T ss_pred             -----CCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCC-EEEEccCCCEEEEEcCCC----cEEEEECCCCCCCceE
Confidence                 267999999 56665543  3456788999999884 889888778999998632    222221  11235788


Q ss_pred             eEECCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCCEEEEEECCCCCeeec
Q 015463          300 VRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKA  379 (406)
Q Consensus       300 i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~~  379 (406)
                      +++|++|++|++....                                      ..+.+++++|+.. .+.-+.+.  ..
T Consensus       235 i~~d~~g~l~v~~~~~--------------------------------------~~i~~~~~~g~~~-~~~~~~~~--~~  273 (300)
T 2qc5_A          235 ITAGKNSEIWFTEWGA--------------------------------------NQIGRITNDNTIQ-EYQLQTEN--AE  273 (300)
T ss_dssp             EEECSTTCEEEEETTT--------------------------------------TEEEEECTTSCEE-EEECCSTT--CC
T ss_pred             EEECCCCCEEEeccCC--------------------------------------CeEEEECCCCcEE-EEECCccC--Cc
Confidence            9999999999998542                                      1277888887665 34333222  13


Q ss_pred             eeEEEE-eCCEEEEecCCCCeEEEEeC
Q 015463          380 ISEVEE-KDGKLWMGSVLMPFVAVYDL  405 (406)
Q Consensus       380 ~s~~~~-~~g~Ly~Gs~~~~~i~~~~~  405 (406)
                      +.++.. .+|+||+++. + .|.+++.
T Consensus       274 ~~~i~~~~~g~l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          274 PHGITFGKDGSVWFALK-C-KIGKLNL  298 (300)
T ss_dssp             CCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred             cceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence            444544 4789999998 6 9999875

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.76  E-value=4.3e-16  Score=153.17  Aligned_cols=242  Identities=16%  Similarity=0.100  Sum_probs=165.5

Q ss_pred             CcccCcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC
Q 015463           66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (406)
Q Consensus        66 ~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g  143 (406)
                      .++..|.+|++|++|+++++...+++|.+++.+  .+..+...                       ...|. ++++++++
T Consensus       128 a~~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-----------------------~~~~~-ia~~~~g~  183 (409)
T 3hrp_A          128 AKFKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-----------------------FKGGK-PAVTKDKQ  183 (409)
T ss_dssp             CCCCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-----------------------CCBCB-CEECTTSS
T ss_pred             cccCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-----------------------CCCCc-eeEecCCC
Confidence            357899999999999955566677999999987  33333221                       13355 88998545


Q ss_pred             cEEEEeCCC--cEEEEeCCCCeEEEcccccCCcccccccceEEcC-CCCEEEEeCCCchhhhccccccccccccccCCCC
Q 015463          144 DLYIADAYF--GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDP  220 (406)
Q Consensus       144 ~L~Vad~~~--gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~  220 (406)
                      .||+++...  .|+++++.++................|+++++++ +|.||+++.                         
T Consensus       184 ~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~-------------------------  238 (409)
T 3hrp_A          184 RVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDS-------------------------  238 (409)
T ss_dssp             EEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECT-------------------------
T ss_pred             cEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC-------------------------
Confidence            689988754  7999998866432111111111346789999999 799999763                         


Q ss_pred             CCCcccCCCCeEEEEeCCCCeEEEe----cccCCC--cc-eEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecC
Q 015463          221 SPIKITKDTGRVLKYDPTTKQTTVL----LRNLQF--PN-GLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAIL  293 (406)
Q Consensus       221 ~~~~~~~~~g~l~~~d~~t~~~~~~----~~~~~~--~n-gi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l  293 (406)
                              .++|+++|++++....+    ..+...  |. ++++++++..+|+++...++|++++.++.    ...+...
T Consensus       239 --------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~----~~~~~g~  306 (409)
T 3hrp_A          239 --------NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE----CEWFCGS  306 (409)
T ss_dssp             --------TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC----EEEEEEC
T ss_pred             --------CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC----EEEEEeC
Confidence                    26899999998876655    222222  33 99999987899999999999999987653    2222211


Q ss_pred             ---------------CCCCCceEECCCCCEEEEEc-cCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEE
Q 015463          294 ---------------PGYPDNVRTNEKGEFWVAIH-CRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAV  357 (406)
Q Consensus       294 ---------------~g~pd~i~~d~~G~lwv~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~  357 (406)
                                     -..|.++++|++|++|++.. ..+                                      .|.
T Consensus       307 ~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~--------------------------------------~I~  348 (409)
T 3hrp_A          307 ATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGY--------------------------------------CLR  348 (409)
T ss_dssp             TTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTC--------------------------------------EEE
T ss_pred             CCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCC--------------------------------------EEE
Confidence                           13488999999999999986 442                                      266


Q ss_pred             EEC-CCCCEEEEEECC------CC----CeeeceeEEEE-eCCEEEEecCCCCeEEEEeCC
Q 015463          358 KYS-PEGKILQVLEDS------KG----KVVKAISEVEE-KDGKLWMGSVLMPFVAVYDLS  406 (406)
Q Consensus       358 ~~d-~~g~~~~~~~~~------~g----~~~~~~s~~~~-~~g~Ly~Gs~~~~~i~~~~~~  406 (406)
                      +++ ++|++.......      +|    ..+.....+.. .+|+||+....++.|.++.++
T Consensus       349 ~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          349 KLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             EEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred             EEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence            677 666554443221      11    11234455554 469999999999999998864

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.75  E-value=3.6e-16  Score=166.39  Aligned_cols=236  Identities=13%  Similarity=0.224  Sum_probs=166.4

Q ss_pred             cceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-EEE
Q 015463           71 PESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYI  147 (406)
Q Consensus        71 pe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-L~V  147 (406)
                      ..+|+.|++|+ +|+|+.+++|.+++..  .++.+.......              ..........+|+.|. +|+ |||
T Consensus       359 V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~--------------~~~l~~~~v~~i~~d~-~g~~lWi  422 (795)
T 4a2l_A          359 VSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDES--------------ARGIGSNNIKAVYVDE-KKSLVYI  422 (795)
T ss_dssp             EEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC--------------------CCSCSCEEEEEEET-TTTEEEE
T ss_pred             eEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCc--------------ccCCCCccEEEEEEcC-CCCEEEE
Confidence            46788999999 9999999899999976  455553211000              0000124467889998 899 999


Q ss_pred             EeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463          148 ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK  227 (406)
Q Consensus       148 ad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  227 (406)
                      ++...||+++|+++++++.+.......+...+.+++.|++|+||+++.                                
T Consensus       423 gt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~--------------------------------  470 (795)
T 4a2l_A          423 GTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL--------------------------------  470 (795)
T ss_dssp             EETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES--------------------------------
T ss_pred             EeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec--------------------------------
Confidence            998889999999998887765322222334678899999999999984                                


Q ss_pred             CCCeEEEEeCCCCeEEEeccc-----C--CCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee---cCCCCC
Q 015463          228 DTGRVLKYDPTTKQTTVLLRN-----L--QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA---ILPGYP  297 (406)
Q Consensus       228 ~~g~l~~~d~~t~~~~~~~~~-----~--~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~---~l~g~p  297 (406)
                        ++|++||+++++++.+...     +  .....+..++++. +|++..  ++|++++.++.+.    .+.   ...+++
T Consensus       471 --~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~--~Gl~~~~~~~~~~----~~~~~~~~~~l~  541 (795)
T 4a2l_A          471 --SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKR-LWIGGE--EGLSVFKQEGLDI----QKASILPVSNVT  541 (795)
T ss_dssp             --SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCC-EEEEES--SCEEEEEEETTEE----EECCCSCSCGGG
T ss_pred             --CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCC-EEEEeC--CceEEEeCCCCeE----EEecCCCCCCCC
Confidence              3599999999888776432     2  1234566666664 666653  6899998764322    221   122333


Q ss_pred             C----ceEECCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCCEEEEEECCC
Q 015463          298 D----NVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSK  373 (406)
Q Consensus       298 d----~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~  373 (406)
                      .    .+..|++|++|+++..+                                        +.++|++.+.+..+...+
T Consensus       542 ~~~i~~i~~d~~g~lWigT~~G----------------------------------------l~~~d~~~~~~~~~~~~~  581 (795)
T 4a2l_A          542 KLFTNCIYEASNGIIWVGTREG----------------------------------------FYCFNEKDKQIKRYNTTN  581 (795)
T ss_dssp             GSCEEEEEECTTSCEEEEESSC----------------------------------------EEEEETTTTEEEEECGGG
T ss_pred             CCeeEEEEECCCCCEEEEeCCC----------------------------------------ceeECCCCCcEEEeCCCC
Confidence            3    46789999999999755                                        788998888888887667


Q ss_pred             CCeeeceeEEEEe-CCEEEEecCCCCeEEEEeC
Q 015463          374 GKVVKAISEVEEK-DGKLWMGSVLMPFVAVYDL  405 (406)
Q Consensus       374 g~~~~~~s~~~~~-~g~Ly~Gs~~~~~i~~~~~  405 (406)
                      |.....+.++.++ +|+||+|+  .++|.+++.
T Consensus       582 gl~~~~i~~i~~d~~g~lWi~t--~~Gl~~~~~  612 (795)
T 4a2l_A          582 GLPNNVVYGILEDSFGRLWLST--NRGISCFNP  612 (795)
T ss_dssp             TCSCSCEEEEEECTTSCEEEEE--TTEEEEEET
T ss_pred             CCchhheEEEEECCCCCEEEEc--CCceEEEcC
Confidence            7655567777665 78999999  588998874

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.75  E-value=8.4e-16  Score=152.06  Aligned_cols=240  Identities=13%  Similarity=0.127  Sum_probs=168.0

Q ss_pred             CcccCcceEEEcC--CCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC
Q 015463           66 NQIQGPESMAFDP--LGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK  141 (406)
Q Consensus        66 ~~~~gpe~i~~d~--~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~  141 (406)
                      .++..|+.+++|+  +|+ ||+....++|.+++.+  .++.+..                       ...+|.+|++++ 
T Consensus       134 ~~~~~P~~lavdp~~~g~-Lyv~d~~~~I~~id~~~~~v~~~~~-----------------------~~~~P~~ia~d~-  188 (430)
T 3tc9_A          134 GGFGGAVWLSFDPKNHNH-LYLVGEQHPTRLIDFEKEYVSTVYS-----------------------GLSKVRTICWTH-  188 (430)
T ss_dssp             BCCSCCCEEEEETTEEEE-EEEEEBTEEEEEEETTTTEEEEEEC-----------------------CCSCEEEEEECT-
T ss_pred             cCCCCCCEEEECCCCCCe-EEEEeCCCcEEEEECCCCEEEEEec-----------------------CCCCcceEEEeC-
Confidence            4578999999996  466 7776655899999987  3333321                       145699999999 


Q ss_pred             CCc-EEEEeCCC-----cEEEEeCCCCeE--EEcccccCCcccccccceEEcC-CCCEEEEeCCCchhhhcccccccccc
Q 015463          142 TGD-LYIADAYF-----GLMKVGPEGGLA--TSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKENIPLQ  212 (406)
Q Consensus       142 ~g~-L~Vad~~~-----gl~~~d~~~~~~--~~l~~~~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~  212 (406)
                      +|+ |||++...     .++.++++++..  ..+.      .+..|+++++++ +|+||+++..                
T Consensus       189 ~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~------~~~~p~giavdp~~g~lyv~d~~----------------  246 (430)
T 3tc9_A          189 EADSMIITNDQNNNDRPNNYILTRESGFKVITELT------KGQNCNGAETHPINGELYFNSWN----------------  246 (430)
T ss_dssp             TSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEE------ECSSCCCEEECTTTCCEEEEETT----------------
T ss_pred             CCCEEEEEeCCCCcccceEEEEeCCCceeeeeeec------cCCCceEEEEeCCCCEEEEEECC----------------
Confidence            666 99999742     467777765432  1211      356799999999 8999999864                


Q ss_pred             ccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec--ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCC--Cccee
Q 015463          213 LCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL--RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEK--AGNLE  288 (406)
Q Consensus       213 ~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~--~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~--~~~~~  288 (406)
                                      .++|++|+++++....+.  .....|++++++++++.+|+++...++|++++.++..  .....
T Consensus       247 ----------------~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~  310 (430)
T 3tc9_A          247 ----------------AGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPY  310 (430)
T ss_dssp             ----------------TTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCE
T ss_pred             ----------------CCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceE
Confidence                            378999999987763332  2345799999999999999999999999999987531  11112


Q ss_pred             eeecC---C------------CCCC-ceEE--------CCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeee
Q 015463          289 AFAIL---P------------GYPD-NVRT--------NEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHY  344 (406)
Q Consensus       289 ~~~~l---~------------g~pd-~i~~--------d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  344 (406)
                      .+...   .            ..|. ++++        |++|+|||+....+                            
T Consensus       311 ~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~----------------------------  362 (430)
T 3tc9_A          311 IVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENH----------------------------  362 (430)
T ss_dssp             EEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGT----------------------------
T ss_pred             EEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCc----------------------------
Confidence            22211   1            1366 6776        56799999986431                            


Q ss_pred             eEeecCcceEEEEEECCCCCEEEEEECC--------CC-----CeeeceeEEEEe--CCEEEEecCCCCeEEEEeCC
Q 015463          345 LIHVGGRLHAMAVKYSPEGKILQVLEDS--------KG-----KVVKAISEVEEK--DGKLWMGSVLMPFVAVYDLS  406 (406)
Q Consensus       345 ~~~~~~~~~~~v~~~d~~g~~~~~~~~~--------~g-----~~~~~~s~~~~~--~g~Ly~Gs~~~~~i~~~~~~  406 (406)
                                .|.+++++|++.......        +|     ..+.....+...  +|.||+....++.|.+++++
T Consensus       363 ----------~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          363 ----------CIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             ----------EEEEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             ----------EEEEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence                      377788888766665431        22     012345556544  68999999999999998864

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.74  E-value=3.7e-16  Score=148.79  Aligned_cols=248  Identities=15%  Similarity=0.229  Sum_probs=157.3

Q ss_pred             cccCcceEEEcCCCCeeEEEecCC-------------------------EEEEEeCC--ceeEEEeecCCCccccCCCCC
Q 015463           67 QIQGPESMAFDPLGRGPYTGVADG-------------------------RILFWDGL--KWTDFAFTSNNRSELCNPKPI  119 (406)
Q Consensus        67 ~~~gpe~i~~d~~g~~ly~g~~~g-------------------------~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~  119 (406)
                      ++..|.+++++++|+ +|++...+                         .|++++.+  .+...  ..            
T Consensus        22 ~l~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~--~~------------   86 (329)
T 3fvz_A           22 LPGQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS--SG------------   86 (329)
T ss_dssp             CCSCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE--EC------------
T ss_pred             ecCCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec--cC------------
Confidence            567899999999999 66654433                         58888875  22211  11            


Q ss_pred             cccccccCCcCCcceEEEEeCCCCcEEEEeCC-CcEEEEeCCCC--eEEEcccc-cC---CcccccccceEEcC-CCCEE
Q 015463          120 ATSYLKNEHICGRPLGLRFDKKTGDLYIADAY-FGLMKVGPEGG--LATSLATE-AE---GVPLRFTNDLDIDD-EGNVY  191 (406)
Q Consensus       120 ~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~-~gl~~~d~~~~--~~~~l~~~-~~---~~~~~~~~~l~~d~-dG~ly  191 (406)
                             ......|.+|++++ +|+|||++.. +.|.++++++.  .+..+... ..   ...+..|++|++++ +|++|
T Consensus        87 -------~~~~~~p~gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~ly  158 (329)
T 3fvz_A           87 -------KNLFYLPHGLSIDT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVF  158 (329)
T ss_dssp             -------TTTCSSEEEEEECT-TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEE
T ss_pred             -------CCccCCceEEEECC-CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEE
Confidence                   01135699999998 8999999986 57999999876  33333221 01   23466899999999 89999


Q ss_pred             EEeC-CCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec----------ccCCCcceEEEecC
Q 015463          192 FTDS-STNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL----------RNLQFPNGLSLSKD  260 (406)
Q Consensus       192 ~t~~-~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~----------~~~~~~ngi~l~~d  260 (406)
                      ++++ .                                .++|.+||++......+.          ..+..|++|+++++
T Consensus       159 v~d~~~--------------------------------~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~  206 (329)
T 3fvz_A          159 VSDGYC--------------------------------NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH  206 (329)
T ss_dssp             EEECSS--------------------------------CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETT
T ss_pred             EEeCCC--------------------------------CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC
Confidence            9985 2                                368999997654444442          13456899999999


Q ss_pred             CCEEEEEeCCCCeEEEEEee-CCCCcceeeee-c-CCCCCCceEECCCCCEEEEEccCCcchhhhhhcChhhhhhhhccC
Q 015463          261 KSFFVFCEGSVGRLHKYWLI-GEKAGNLEAFA-I-LPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLP  337 (406)
Q Consensus       261 ~~~l~v~~t~~~~i~~~~~~-g~~~~~~~~~~-~-l~g~pd~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~  337 (406)
                      +..+|+++...++|.+|+.+ |..   ...+. . ....|..+++.+ |.+++.....  .                   
T Consensus       207 ~g~l~v~d~~~~~I~~~~~~~G~~---~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~--~-------------------  261 (329)
T 3fvz_A          207 LDQLCVADRENGRIQCFKTDTKEF---VREIKHASFGRNVFAISYIP-GFLFAVNGKP--Y-------------------  261 (329)
T ss_dssp             TTEEEEEETTTTEEEEEETTTCCE---EEEECCTTTTTCEEEEEEET-TEEEEEECCC--C-------------------
T ss_pred             CCEEEEEECCCCEEEEEECCCCcE---EEEEeccccCCCcceeeecC-CEEEEeCCCE--E-------------------
Confidence            77899999999999999976 321   11111 0 111233444444 4333332110  0                   


Q ss_pred             ccceeeeeEeecCcceEEEEEEC-CCCCEEEEEECCCCCeeeceeEEE-EeCCEEEEecCCCCeEEEEeC
Q 015463          338 ISAKTHYLIHVGGRLHAMAVKYS-PEGKILQVLEDSKGKVVKAISEVE-EKDGKLWMGSVLMPFVAVYDL  405 (406)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~v~~~d-~~g~~~~~~~~~~g~~~~~~s~~~-~~~g~Ly~Gs~~~~~i~~~~~  405 (406)
                                +.......+..++ .+|+.+..+....+. ......+. ..+|+||+....++.|.++++
T Consensus       262 ----------v~~~~~~~v~~~~~~~g~~~~~~~~~~~~-~~~p~~ia~~~dG~lyvad~~~~~I~~~~~  320 (329)
T 3fvz_A          262 ----------FGDQEPVQGFVMNFSSGEIIDVFKPVRKH-FDMPHDIVASEDGTVYIGDAHTNTVWKFTL  320 (329)
T ss_dssp             ----------TTCSCCCCEEEEETTTCCEEEEECCSSSC-CSSEEEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred             ----------eccCCCcEEEEEEcCCCeEEEEEcCCCCc-cCCeeEEEECCCCCEEEEECCCCEEEEEeC
Confidence                      0001111244555 568888777432222 23445554 457899999999999998875

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.72  E-value=1.2e-15  Score=146.91  Aligned_cols=190  Identities=17%  Similarity=0.172  Sum_probs=142.6

Q ss_pred             CcccCcceEEEcC-CCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCC
Q 015463           66 NQIQGPESMAFDP-LGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT  142 (406)
Q Consensus        66 ~~~~gpe~i~~d~-~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~  142 (406)
                      ..+..|+++++|+ ++.++|+...+++|++++.+  ..+.+..                      .....|.||++|..+
T Consensus        70 ~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~----------------------~~~~~p~glavd~~~  127 (349)
T 3v64_C           70 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS----------------------TGLESPGGLAVDWVH  127 (349)
T ss_dssp             CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC----------------------SSCSCCCEEEEETTT
T ss_pred             cCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe----------------------CCCCCccEEEEecCC
Confidence            4567899999995 56667788889999999977  2223211                      113568999999767


Q ss_pred             CcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcC-CCCEEEEeCCCchhhhccccccccccccccCCCC
Q 015463          143 GDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDP  220 (406)
Q Consensus       143 g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~  220 (406)
                      ++||+++.. +.|.++++++...+.+..    ..+..|+++++|+ +|.||+++..                        
T Consensus       128 g~ly~~d~~~~~I~~~~~dG~~~~~l~~----~~l~~P~~iavdp~~g~ly~td~~------------------------  179 (349)
T 3v64_C          128 DKLYWTDSGTSRIEVANLDGAHRKVLLW----QSLEKPRAIALHPMEGTIYWTDWG------------------------  179 (349)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEEC----TTCSCEEEEEEETTTTEEEEEECS------------------------
T ss_pred             CeEEEEcCCCCeEEEEcCCCCceEEEEe----CCCCCcceEEEecCcCeEEEeccC------------------------
Confidence            899999986 579999998765544432    1256799999997 7899999864                        


Q ss_pred             CCCcccCCCCeEEEEeCCCCeEEEec-ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee-cCCCCCC
Q 015463          221 SPIKITKDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPGYPD  298 (406)
Q Consensus       221 ~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~-~l~g~pd  298 (406)
                             ..++|+++++++...+.+. .++..|+||+++++++.|||+++..++|++++++|.   ..+.+. ...+.|+
T Consensus       180 -------~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~---~~~~~~~~~~~~P~  249 (349)
T 3v64_C          180 -------NTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS---HRKAVISQGLPHPF  249 (349)
T ss_dssp             -------SSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECSSCSSEE
T ss_pred             -------CCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC---ceEEEEeCCCCCce
Confidence                   1268999999866555554 567889999999999999999999999999998863   223333 2345799


Q ss_pred             ceEECCCCCEEEEEccCC
Q 015463          299 NVRTNEKGEFWVAIHCRR  316 (406)
Q Consensus       299 ~i~~d~~G~lwv~~~~~~  316 (406)
                      +++++ +|++|++.....
T Consensus       250 giav~-~~~ly~td~~~~  266 (349)
T 3v64_C          250 AITVF-EDSLYWTDWHTK  266 (349)
T ss_dssp             EEEEE-TTEEEEEETTTT
T ss_pred             EEEEE-CCEEEEecCCCC
Confidence            99995 678999886543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.72  E-value=1e-15  Score=162.82  Aligned_cols=232  Identities=13%  Similarity=0.221  Sum_probs=163.2

Q ss_pred             cceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463           71 PESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (406)
Q Consensus        71 pe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va  148 (406)
                      ..+++.|++|+.||+|+.+++|++++.+  .++.+.....                .  .....+..|+.|+ +|+|||+
T Consensus       408 v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~----------------~--l~~~~v~~i~~d~-~g~lwig  468 (795)
T 4a2l_A          408 IKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNS----------------Q--LVNENVYAILPDG-EGNLWLG  468 (795)
T ss_dssp             EEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTS----------------C--CSCSCEEEEEECS-SSCEEEE
T ss_pred             EEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCC----------------C--cCCCeeEEEEECC-CCCEEEE
Confidence            3578888888768999998999999976  4554421100                0  1124567889998 8999999


Q ss_pred             eCCCcEEEEeCCCCeEEEccccc--CCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCccc
Q 015463          149 DAYFGLMKVGPEGGLATSLATEA--EGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKIT  226 (406)
Q Consensus       149 d~~~gl~~~d~~~~~~~~l~~~~--~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~  226 (406)
                      +. .||+++++++++++.+....  .+.....+.++++|++|+||+++.                               
T Consensus       469 t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-------------------------------  516 (795)
T 4a2l_A          469 TL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-------------------------------  516 (795)
T ss_dssp             ES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-------------------------------
T ss_pred             ec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-------------------------------
Confidence            97 79999999998887664321  112234678899999999999984                               


Q ss_pred             CCCCeEEEEeCCCCeEEEecc-----cCC--CcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCc
Q 015463          227 KDTGRVLKYDPTTKQTTVLLR-----NLQ--FPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDN  299 (406)
Q Consensus       227 ~~~g~l~~~d~~t~~~~~~~~-----~~~--~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~  299 (406)
                         ++|++||++++++ .+..     ++.  ..+.++.++++. +|++..  ++|.+|+.+   .+..+.+....|+|++
T Consensus       517 ---~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigT~--~Gl~~~d~~---~~~~~~~~~~~gl~~~  586 (795)
T 4a2l_A          517 ---EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGI-IWVGTR--EGFYCFNEK---DKQIKRYNTTNGLPNN  586 (795)
T ss_dssp             ---SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSC-EEEEES--SCEEEEETT---TTEEEEECGGGTCSCS
T ss_pred             ---CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCC-EEEEeC--CCceeECCC---CCcEEEeCCCCCCchh
Confidence               3599999988877 4321     121  223555556664 666643  389999854   3344555545677776


Q ss_pred             ----eEECCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCCEEEEEECCCCC
Q 015463          300 ----VRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGK  375 (406)
Q Consensus       300 ----i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~  375 (406)
                          +..|++|++|+++..+                                        +.+++++.+.+..|...+|.
T Consensus       587 ~i~~i~~d~~g~lWi~t~~G----------------------------------------l~~~~~~~~~~~~~~~~dGl  626 (795)
T 4a2l_A          587 VVYGILEDSFGRLWLSTNRG----------------------------------------ISCFNPETEKFRNFTESDGL  626 (795)
T ss_dssp             CEEEEEECTTSCEEEEETTE----------------------------------------EEEEETTTTEEEEECGGGTC
T ss_pred             heEEEEECCCCCEEEEcCCc----------------------------------------eEEEcCCCCcEEEcCCcCCC
Confidence                6689999999999654                                        78899998888888877775


Q ss_pred             eeece--eE-EEEeCCEEEEecCCCCeEEEEeC
Q 015463          376 VVKAI--SE-VEEKDGKLWMGSVLMPFVAVYDL  405 (406)
Q Consensus       376 ~~~~~--s~-~~~~~g~Ly~Gs~~~~~i~~~~~  405 (406)
                      ....+  .+ +...+|+||+|+.  +++.+++.
T Consensus       627 ~~~~f~~~~~~~~~~G~l~~g~~--~Gl~~~~p  657 (795)
T 4a2l_A          627 QSNQFNTASYCRTSVGQMYFGGI--NGITTFRP  657 (795)
T ss_dssp             SCSCEEEEEEEECTTSCEEEEET--TEEEEECG
T ss_pred             ccccCccCceeECCCCeEEEecC--CceEEEcH
Confidence            54333  23 3346899999995  78888763

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.71  E-value=7.5e-16  Score=163.62  Aligned_cols=231  Identities=14%  Similarity=0.199  Sum_probs=162.7

Q ss_pred             cceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463           71 PESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (406)
Q Consensus        71 pe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va  148 (406)
                      ..+|+.|++|+ ||+|+.+++|++++..  .++.+...                    ......+..|+.|+ +|+|||+
T Consensus       409 v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~--------------------~~~~~~v~~i~~d~-~g~lwig  466 (781)
T 3v9f_A          409 VLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELE--------------------KNELLDVRVFYEDK-NKKIWIG  466 (781)
T ss_dssp             EEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCST--------------------TTCCCCEEEEEECT-TSEEEEE
T ss_pred             eEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccC--------------------CCCCCeEEEEEECC-CCCEEEE
Confidence            35788888898 9999998899999875  34433210                    00124467888998 8999999


Q ss_pred             eCCCcEEEEeCCCCeEEEccccc-CCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463          149 DAYFGLMKVGPEGGLATSLATEA-EGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK  227 (406)
Q Consensus       149 d~~~gl~~~d~~~~~~~~l~~~~-~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  227 (406)
                      +. .||+++++++++++.+.... .......+.++++|++|+||+++..                               
T Consensus       467 t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~-------------------------------  514 (781)
T 3v9f_A          467 TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFG-------------------------------  514 (781)
T ss_dssp             ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESS-------------------------------
T ss_pred             EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcC-------------------------------
Confidence            97 79999999987765543221 1122356788999999999999853                               


Q ss_pred             CCCeEEEEeCCCCeEEEecc--cCCC--cceEEEecCCCEEEEEeCCCCeE-EEEEeeCCCCcceeeeecCCCCCC----
Q 015463          228 DTGRVLKYDPTTKQTTVLLR--NLQF--PNGLSLSKDKSFFVFCEGSVGRL-HKYWLIGEKAGNLEAFAILPGYPD----  298 (406)
Q Consensus       228 ~~g~l~~~d~~t~~~~~~~~--~~~~--~ngi~l~~d~~~l~v~~t~~~~i-~~~~~~g~~~~~~~~~~~l~g~pd----  298 (406)
                        ++|++||+++++++.+..  ++..  ...++.++++. +|++..  .++ .+|+.+   .+..+.+....|+|+    
T Consensus       515 --~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWi~T~--~Glv~~~d~~---~~~~~~~~~~~gl~~~~i~  586 (781)
T 3v9f_A          515 --GGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQ-MWLATG--EGLVCFPSAR---NFDYQVFQRKEGLPNTHIR  586 (781)
T ss_dssp             --SCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSC-EEEEET--TEEEEESCTT---TCCCEEECGGGTCSCCCCC
T ss_pred             --CCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCC-EEEEEC--CCceEEECCC---CCcEEEccccCCCCCceEE
Confidence              459999999888877643  2322  23555555664 666643  567 888754   334455544456665    


Q ss_pred             ceEECCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCCEEEEEECCCCCeee
Q 015463          299 NVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVK  378 (406)
Q Consensus       299 ~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~  378 (406)
                      ++..|++|+||+++..+                                        +.+|+++.+.+..|...+|....
T Consensus       587 ~i~~d~~g~lW~~t~~G----------------------------------------l~~~~~~~~~~~~~~~~dGl~~~  626 (781)
T 3v9f_A          587 AISEDKNGNIWASTNTG----------------------------------------ISCYITSKKCFYTYDHSNNIPQG  626 (781)
T ss_dssp             EEEECSSSCEEEECSSC----------------------------------------EEEEETTTTEEEEECGGGTCCSS
T ss_pred             EEEECCCCCEEEEcCCc----------------------------------------eEEEECCCCceEEecccCCcccc
Confidence            47789999999998765                                        88899999899999877775433


Q ss_pred             ce---eEEEEeCCEEEEecCCCCeEEEEeC
Q 015463          379 AI---SEVEEKDGKLWMGSVLMPFVAVYDL  405 (406)
Q Consensus       379 ~~---s~~~~~~g~Ly~Gs~~~~~i~~~~~  405 (406)
                      ..   +.+...+|+||+|+.  +++.+++.
T Consensus       627 ~f~~~~~~~~~~G~l~~g~~--~Gl~~f~p  654 (781)
T 3v9f_A          627 SFISGCVTKDHNGLIYFGSI--NGLCFFNP  654 (781)
T ss_dssp             CEEEEEEEECTTSCEEEEET--TEEEEECS
T ss_pred             ccccCceEECCCCEEEEECC--CceEEECh
Confidence            32   233345899999995  78888764

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.71  E-value=1.7e-15  Score=139.62  Aligned_cols=188  Identities=18%  Similarity=0.153  Sum_probs=136.7

Q ss_pred             ccCcceEEEcCC-CCeeEEEecCCEEEEEeCC-c-eeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc
Q 015463           68 IQGPESMAFDPL-GRGPYTGVADGRILFWDGL-K-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (406)
Q Consensus        68 ~~gpe~i~~d~~-g~~ly~g~~~g~I~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~  144 (406)
                      ...|+++++|++ +.++|+...+++|.+++.+ . ...+..                      .....|.+|++++++++
T Consensus        35 ~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~----------------------~~~~~p~~ia~d~~~~~   92 (267)
T 1npe_A           35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR----------------------QDLGSPEGIALDHLGRT   92 (267)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC----------------------TTCCCEEEEEEETTTTE
T ss_pred             CCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE----------------------CCCCCccEEEEEecCCe
Confidence            467999999985 4555566778899999876 2 222210                      01256999999985689


Q ss_pred             EEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcC-CCCEEEEeCCCchhhhccccccccccccccCCCCCC
Q 015463          145 LYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSP  222 (406)
Q Consensus       145 L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  222 (406)
                      ||+++.. +.|.+++.++...+.+...    .+..|+++++|+ +|+||+++..                          
T Consensus        93 lyv~d~~~~~I~~~~~~g~~~~~~~~~----~~~~P~~i~vd~~~g~lyv~~~~--------------------------  142 (267)
T 1npe_A           93 IFWTDSQLDRIEVAKMDGTQRRVLFDT----GLVNPRGIVTDPVRGNLYWTDWN--------------------------  142 (267)
T ss_dssp             EEEEETTTTEEEEEETTSCSCEEEECS----SCSSEEEEEEETTTTEEEEEECC--------------------------
T ss_pred             EEEEECCCCEEEEEEcCCCCEEEEEEC----CCCCccEEEEeeCCCEEEEEECC--------------------------
Confidence            9999986 5799999887654443221    245789999998 5899999853                          


Q ss_pred             CcccCCCCeEEEEeCCCCeEEEec-ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceE
Q 015463          223 IKITKDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVR  301 (406)
Q Consensus       223 ~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~  301 (406)
                          ...++|+++++++...+.+. ..+..|+|++++++++.+||++...++|+++++++.   ....+......|++++
T Consensus       143 ----~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~---~~~~~~~~~~~P~gi~  215 (267)
T 1npe_A          143 ----RDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---GRRKVLEGLQYPFAVT  215 (267)
T ss_dssp             ----SSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE---EEEEEEECCCSEEEEE
T ss_pred             ----CCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC---ceEEEecCCCCceEEE
Confidence                12367999988755444443 567789999999999999999999999999998652   2223333345699999


Q ss_pred             ECCCCCEEEEEccC
Q 015463          302 TNEKGEFWVAIHCR  315 (406)
Q Consensus       302 ~d~~G~lwv~~~~~  315 (406)
                      .| +|.+|++....
T Consensus       216 ~d-~~~lyva~~~~  228 (267)
T 1npe_A          216 SY-GKNLYYTDWKT  228 (267)
T ss_dssp             EE-TTEEEEEETTT
T ss_pred             Ee-CCEEEEEECCC
Confidence            98 68899988654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.70  E-value=3.4e-15  Score=158.55  Aligned_cols=239  Identities=13%  Similarity=0.176  Sum_probs=161.6

Q ss_pred             cceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463           71 PESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (406)
Q Consensus        71 pe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va  148 (406)
                      ..+|+.|++|+ +|+|+.+++|.+++..  .++.+........             ..........+|+.|+ +|+|||+
T Consensus       315 v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~-------------~~~l~~~~v~~i~~d~-~g~lWig  379 (781)
T 3v9f_A          315 ARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMN-------------ESSLSNKVVSSVCDDG-QGKLWIG  379 (781)
T ss_dssp             EEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCC-------------SSCCSSSCEEEEEECT-TSCEEEE
T ss_pred             EEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccc-------------cCCCCCcceEEEEEcC-CCCEEEE
Confidence            35789999998 9999999999999876  4555432110000             0001124467889998 8999999


Q ss_pred             eCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCC
Q 015463          149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKD  228 (406)
Q Consensus       149 d~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  228 (406)
                      +..+||++++++++.++.+... .+.+...+.+++.|++|+||+++..                                
T Consensus       380 t~~~Gl~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~d~~g~lWigt~~--------------------------------  426 (781)
T 3v9f_A          380 TDGGGINVFENGKRVAIYNKEN-RELLSNSVLCSLKDSEGNLWFGTYL--------------------------------  426 (781)
T ss_dssp             EBSSCEEEEETTEEEEECC------CCCSBEEEEEECTTSCEEEEETT--------------------------------
T ss_pred             eCCCcEEEEECCCCeEEEccCC-CCCCCcceEEEEECCCCCEEEEecc--------------------------------
Confidence            9888999999987766655321 1223356788999999999999853                                


Q ss_pred             CCeEEEEeCCCCeEEEeccc-CC--CcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCC------CCCCc
Q 015463          229 TGRVLKYDPTTKQTTVLLRN-LQ--FPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILP------GYPDN  299 (406)
Q Consensus       229 ~g~l~~~d~~t~~~~~~~~~-~~--~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~------g~pd~  299 (406)
                       ++|++||+++++++.+... +.  ....++.++++ .+|+...  ++|++++.++.   ..+.+....      .....
T Consensus       427 -~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g-~lwigt~--~Gl~~~~~~~~---~~~~~~~~~~~~~~~~~i~~  499 (781)
T 3v9f_A          427 -GNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNK-KIWIGTH--AGVFVIDLASK---KVIHHYDTSNSQLLENFVRS  499 (781)
T ss_dssp             -EEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTS-EEEEEET--TEEEEEESSSS---SCCEEECTTTSSCSCSCEEE
T ss_pred             -CCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCC-CEEEEEC--CceEEEeCCCC---eEEecccCcccccccceeEE
Confidence             5799999998888776432 22  22345555444 4666643  68999986532   222332111      22345


Q ss_pred             eEECCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCCEEEEEECCCCCeeec
Q 015463          300 VRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKA  379 (406)
Q Consensus       300 i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~~  379 (406)
                      ++.|++|++|+++...                                       .+++++++++.+..+...++.....
T Consensus       500 i~~d~~g~lWigt~~~---------------------------------------Gl~~~~~~~~~~~~~~~~~~l~~~~  540 (781)
T 3v9f_A          500 IAQDSEGRFWIGTFGG---------------------------------------GVGIYTPDMQLVRKFNQYEGFCSNT  540 (781)
T ss_dssp             EEECTTCCEEEEESSS---------------------------------------CEEEECTTCCEEEEECTTTTCSCSC
T ss_pred             EEEcCCCCEEEEEcCC---------------------------------------CEEEEeCCCCeEEEccCCCCCCCCe
Confidence            7789999999999632                                       1788999888888887666655556


Q ss_pred             eeEEEE-eCCEEEEecCCCCeE-EEEeC
Q 015463          380 ISEVEE-KDGKLWMGSVLMPFV-AVYDL  405 (406)
Q Consensus       380 ~s~~~~-~~g~Ly~Gs~~~~~i-~~~~~  405 (406)
                      +.++.+ .+|+||+|+.  .++ .+++.
T Consensus       541 i~~i~~d~~g~lWi~T~--~Glv~~~d~  566 (781)
T 3v9f_A          541 INQIYRSSKGQMWLATG--EGLVCFPSA  566 (781)
T ss_dssp             EEEEEECTTSCEEEEET--TEEEEESCT
T ss_pred             eEEEEECCCCCEEEEEC--CCceEEECC
Confidence            777776 4789999996  677 87764

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.70  E-value=1.6e-15  Score=147.91  Aligned_cols=190  Identities=17%  Similarity=0.166  Sum_probs=141.5

Q ss_pred             CcccCcceEEEcC-CCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCC
Q 015463           66 NQIQGPESMAFDP-LGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT  142 (406)
Q Consensus        66 ~~~~gpe~i~~d~-~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~  142 (406)
                      ..+..|+++++|+ ++.++|+...+++|++++.+  ..+.+...                      ....|.||++|+.+
T Consensus       113 ~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~----------------------~~~~p~glavd~~~  170 (386)
T 3v65_B          113 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST----------------------GLESPGGLAVDWVH  170 (386)
T ss_dssp             CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS----------------------SCSCCCCEEEETTT
T ss_pred             cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC----------------------CCCCccEEEEEeCC
Confidence            4567899999995 56677788889999999987  23333211                      13468999999767


Q ss_pred             CcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcC-CCCEEEEeCCCchhhhccccccccccccccCCCC
Q 015463          143 GDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDP  220 (406)
Q Consensus       143 g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~  220 (406)
                      ++||+++.. +.|.++++++...+.+..    ..+..|++|++|+ +|.||+++..                        
T Consensus       171 g~lY~~d~~~~~I~~~~~dg~~~~~l~~----~~l~~P~giavdp~~g~ly~td~~------------------------  222 (386)
T 3v65_B          171 DKLYWTDSGTSRIEVANLDGAHRKVLLW----QSLEKPRAIALHPMEGTIYWTDWG------------------------  222 (386)
T ss_dssp             TEEEEEETTTTEEEECBTTSCSCEEEEC----SSCSCEEEEEEETTTTEEEEEECS------------------------
T ss_pred             CeEEEEcCCCCeEEEEeCCCCceEEeec----CCCCCCcEEEEEcCCCeEEEeccC------------------------
Confidence            999999986 579999998765544432    1356799999996 6789999864                        


Q ss_pred             CCCcccCCCCeEEEEeCCCCeEEEe-cccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCc
Q 015463          221 SPIKITKDTGRVLKYDPTTKQTTVL-LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDN  299 (406)
Q Consensus       221 ~~~~~~~~~g~l~~~d~~t~~~~~~-~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~  299 (406)
                             ..++|+++++++...+.+ ..++..|+||+++++++.|||+++..++|++++++|..  ...++....+.|++
T Consensus       223 -------~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~--~~~~~~~~~~~P~g  293 (386)
T 3v65_B          223 -------NTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH--RKAVISQGLPHPFA  293 (386)
T ss_dssp             -------SSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCS--CEEEECSSCSSEEE
T ss_pred             -------CCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe--eEEEEECCCCCceE
Confidence                   126899999986555554 36678899999999999999999999999999987632  22222233457999


Q ss_pred             eEECCCCCEEEEEccC
Q 015463          300 VRTNEKGEFWVAIHCR  315 (406)
Q Consensus       300 i~~d~~G~lwv~~~~~  315 (406)
                      ++++ ++.+|++....
T Consensus       294 iav~-~~~ly~td~~~  308 (386)
T 3v65_B          294 ITVF-EDSLYWTDWHT  308 (386)
T ss_dssp             EEEE-TTEEEEEETTT
T ss_pred             EEEE-CCEEEEeeCCC
Confidence            9995 56788887654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.69  E-value=7.8e-15  Score=141.34  Aligned_cols=171  Identities=16%  Similarity=0.183  Sum_probs=118.6

Q ss_pred             CcccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC---C
Q 015463           66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK---T  142 (406)
Q Consensus        66 ~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~---~  142 (406)
                      .++..|++|+++++|+ +|+....|+|++++.+..+.+.... -                .....+.|+||+++++   +
T Consensus        26 ~~l~~P~~ia~~pdG~-l~V~e~~g~I~~~d~~G~~~~~~~~-v----------------~~~g~~g~~gia~~pdf~~~   87 (354)
T 3a9g_A           26 SDLEVPWSIAPLGGGR-YLVTERPGRLVLISPSGKKLVASFD-V----------------ANVGEAGLLGLALHPEFPKK   87 (354)
T ss_dssp             CSCSCEEEEEEEETTE-EEEEETTTEEEEECSSCEEEEEECC-C----------------CCSTTCSEEEEEECTTTTTS
T ss_pred             CCCCCCeEEEEcCCCe-EEEEeCCCEEEEEeCCCceEeeccc-e----------------eecCCCceeeEEeCCCCCcC
Confidence            4688999999999998 8888888999999765324443211 0                0111356999999984   5


Q ss_pred             CcEEEEeCC--------CcEEEEeCCCC--e---EEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccc
Q 015463          143 GDLYIADAY--------FGLMKVGPEGG--L---ATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENI  209 (406)
Q Consensus       143 g~L~Vad~~--------~gl~~~d~~~~--~---~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~  209 (406)
                      +.|||++..        ..|.+++.+++  .   .+.+...........+++|++++||+||+++......  ..     
T Consensus        88 g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~--~~-----  160 (354)
T 3a9g_A           88 SWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADP--RL-----  160 (354)
T ss_dssp             CEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCG--GG-----
T ss_pred             CEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCC--cc-----
Confidence            899999864        57999998765  1   2333222222334578999999999999997432110  00     


Q ss_pred             cccccccCCCCCCCcccCCCCeEEEEeCCCC--------eEEEecccCCCcceEEEecCCCEEEEEeCCCCe
Q 015463          210 PLQLCSSLNDPSPIKITKDTGRVLKYDPTTK--------QTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGR  273 (406)
Q Consensus       210 ~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~--------~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~  273 (406)
                       .++.           ....|+|+|+++++.        ..+.+..++.+|+|++++++...||+++....+
T Consensus       161 -~~d~-----------~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~  220 (354)
T 3a9g_A          161 -AQDL-----------SSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVG  220 (354)
T ss_dssp             -GTCT-----------TCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSS
T ss_pred             -ccCC-----------CCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCC
Confidence             0000           233589999999854        346778889999999999965569999987665

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.68  E-value=9.6e-15  Score=138.51  Aligned_cols=191  Identities=14%  Similarity=0.135  Sum_probs=138.9

Q ss_pred             cccCcceEEEcCC-CCeeEEEecCCEEEEEeCCce---eEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCC
Q 015463           67 QIQGPESMAFDPL-GRGPYTGVADGRILFWDGLKW---TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT  142 (406)
Q Consensus        67 ~~~gpe~i~~d~~-g~~ly~g~~~g~I~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~  142 (406)
                      .+..|+++++|++ +.++|+...+++|++++.+..   .....                   ........|.||++|..+
T Consensus        28 ~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~-------------------~~~~~~~~p~glavd~~~   88 (316)
T 1ijq_A           28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT-------------------VISRDIQAPDGLAVDWIH   88 (316)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE-------------------EECSSCSCCCEEEEETTT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEE-------------------EEeCCCCCcCEEEEeecC
Confidence            4678999999975 566777888899999987520   00000                   000113568999999657


Q ss_pred             CcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcC-CCCEEEEeCCCchhhhccccccccccccccCCCC
Q 015463          143 GDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDP  220 (406)
Q Consensus       143 g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~  220 (406)
                      ++||+++.. +.|.++++++...+.+...    .+..|+++++|+ +|.||+++..                        
T Consensus        89 ~~ly~~d~~~~~I~~~~~~g~~~~~~~~~----~~~~P~~iavdp~~g~ly~~d~~------------------------  140 (316)
T 1ijq_A           89 SNIYWTDSVLGTVSVADTKGVKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWG------------------------  140 (316)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSEEEEEEC----TTCCEEEEEEETTTTEEEEEECS------------------------
T ss_pred             CeEEEEECCCCEEEEEeCCCCceEEEEEC----CCCCcceEEeCCCCCEEEEEccC------------------------
Confidence            899999986 5799999987765554331    245789999996 7899999853                        


Q ss_pred             CCCcccCCCCeEEEEeCCCCeEEEec-ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeec---CCCC
Q 015463          221 SPIKITKDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI---LPGY  296 (406)
Q Consensus       221 ~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~---l~g~  296 (406)
                             ..++|+++++++...+.+. ..+..|+|++++++++.+||+++..++|.+++++|.   ..+.+..   ..+.
T Consensus       141 -------~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~---~~~~~~~~~~~~~~  210 (316)
T 1ijq_A          141 -------TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG---NRKTILEDEKRLAH  210 (316)
T ss_dssp             -------SSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEEECTTTTSS
T ss_pred             -------CCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC---ceEEEeecCCccCC
Confidence                   1268999999755555443 567889999999999999999999999999998863   2334432   2356


Q ss_pred             CCceEECCCCCEEEEEccC
Q 015463          297 PDNVRTNEKGEFWVAIHCR  315 (406)
Q Consensus       297 pd~i~~d~~G~lwv~~~~~  315 (406)
                      |++++++ +|++|++....
T Consensus       211 P~giav~-~~~ly~~d~~~  228 (316)
T 1ijq_A          211 PFSLAVF-EDKVFWTDIIN  228 (316)
T ss_dssp             EEEEEEE-TTEEEEEETTT
T ss_pred             cEEEEEE-CCEEEEEECCC
Confidence            9999997 47888887654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.66  E-value=3.8e-14  Score=134.90  Aligned_cols=220  Identities=13%  Similarity=0.146  Sum_probs=148.0

Q ss_pred             ccCcceEEEcCCCCeeEEEe-cCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEE
Q 015463           68 IQGPESMAFDPLGRGPYTGV-ADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (406)
Q Consensus        68 ~~gpe~i~~d~~g~~ly~g~-~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~  146 (406)
                      ...|++++++++|. +|++. .++.|.++|....+........               ........|.+|+++  ++.||
T Consensus        83 ~~~p~~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~~g---------------~~~~~~~~p~~i~~~--~~~ly  144 (328)
T 3dsm_A           83 FTSPRYIHFLSDEK-AYVTQIWDYRIFIINPKTYEITGYIECP---------------DMDMESGSTEQMVQY--GKYVY  144 (328)
T ss_dssp             CSSEEEEEEEETTE-EEEEEBSCSEEEEEETTTTEEEEEEECT---------------TCCTTTCBCCCEEEE--TTEEE
T ss_pred             CCCCcEEEEeCCCe-EEEEECCCCeEEEEECCCCeEEEEEEcC---------------CccccCCCcceEEEE--CCEEE
Confidence            46899999988886 88887 8899999998722211111100               000001368899994  78999


Q ss_pred             EEeC--CCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCc
Q 015463          147 IADA--YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIK  224 (406)
Q Consensus       147 Vad~--~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  224 (406)
                      |++.  .+.|..+|++++++......     ...|++++++++|++|+++..... ...|                    
T Consensus       145 v~~~~~~~~v~viD~~t~~~~~~i~~-----g~~p~~i~~~~dG~l~v~~~~~~~-~~~~--------------------  198 (328)
T 3dsm_A          145 VNCWSYQNRILKIDTETDKVVDELTI-----GIQPTSLVMDKYNKMWTITDGGYE-GSPY--------------------  198 (328)
T ss_dssp             EEECTTCCEEEEEETTTTEEEEEEEC-----SSCBCCCEECTTSEEEEEBCCBCT-TCSS--------------------
T ss_pred             EEcCCCCCEEEEEECCCCeEEEEEEc-----CCCccceEEcCCCCEEEEECCCcc-CCcc--------------------
Confidence            9986  46799999998875432211     135789999999999999854100 0000                    


Q ss_pred             ccCCCCeEEEEeCCCCeEEEecc--cCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecC-CCCCCceE
Q 015463          225 ITKDTGRVLKYDPTTKQTTVLLR--NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAIL-PGYPDNVR  301 (406)
Q Consensus       225 ~~~~~g~l~~~d~~t~~~~~~~~--~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l-~g~pd~i~  301 (406)
                       ....+.|+++|++++++.....  ....|+++++++|++.+|+++.   .|++++.++.+... ..+... ...|++++
T Consensus       199 -~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~~~~-~~~~~~~~~~p~gi~  273 (328)
T 3dsm_A          199 -GYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN---DIWRMPVEADRVPV-RPFLEFRDTKYYGLT  273 (328)
T ss_dssp             -CBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS---SEEEEETTCSSCCS-SCSBCCCSSCEEEEE
T ss_pred             -ccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc---EEEEEECCCCceee-eeeecCCCCceEEEE
Confidence             1124789999999888754322  1247899999999999999864   89999876433221 122221 35699999


Q ss_pred             ECC-CCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCCEEEEEE
Q 015463          302 TNE-KGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLE  370 (406)
Q Consensus       302 ~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~  370 (406)
                      +|+ +|++||+.....                                  ...+.|.+||++|+.+..+.
T Consensus       274 vdp~~g~lyva~~~~y----------------------------------~~~~~V~v~d~~g~~~~~i~  309 (328)
T 3dsm_A          274 VNPNNGEVYVADAIDY----------------------------------QQQGIVYRYSPQGKLIDEFY  309 (328)
T ss_dssp             ECTTTCCEEEEECTTS----------------------------------SSEEEEEEECTTCCEEEEEE
T ss_pred             EcCCCCeEEEEccccc----------------------------------ccCCEEEEECCCCCEEEEEE
Confidence            997 788999983220                                  11235888999999888875

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.65  E-value=1.5e-14  Score=137.31  Aligned_cols=189  Identities=17%  Similarity=0.177  Sum_probs=139.6

Q ss_pred             CcccCcceEEEcC-CCCeeEEEecCCEEEEEeCC-ce--eEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC
Q 015463           66 NQIQGPESMAFDP-LGRGPYTGVADGRILFWDGL-KW--TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK  141 (406)
Q Consensus        66 ~~~~gpe~i~~d~-~g~~ly~g~~~g~I~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~  141 (406)
                      .++..|.++.+|+ ++.++|+...+++|++++.+ ..  +.+...                      ....|.||++|..
T Consensus        32 ~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~----------------------~l~~p~glavd~~   89 (318)
T 3sov_A           32 GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS----------------------GLLSPDGLACDWL   89 (318)
T ss_dssp             EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE----------------------CCSCCCEEEEETT
T ss_pred             cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcC----------------------CCCCccEEEEEcC
Confidence            3456788899986 56777888889999999876 21  111111                      1356899999975


Q ss_pred             CCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcC-CCCEEEEeCCCchhhhccccccccccccccCCC
Q 015463          142 TGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKENIPLQLCSSLND  219 (406)
Q Consensus       142 ~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~  219 (406)
                      +++||++|.. +.|.++++++...+.+..    ..+..|+++++|+ +|.||+++..                       
T Consensus        90 ~g~ly~~d~~~~~I~~~~~dG~~~~~l~~----~~~~~P~giavdp~~g~ly~td~~-----------------------  142 (318)
T 3sov_A           90 GEKLYWTDSETNRIEVSNLDGSLRKVLFW----QELDQPRAIALDPSSGFMYWTDWG-----------------------  142 (318)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEEC----SSCSSEEEEEEEGGGTEEEEEECS-----------------------
T ss_pred             CCeEEEEECCCCEEEEEECCCCcEEEEEe----CCCCCccEEEEeCCCCEEEEEecC-----------------------
Confidence            8999999986 579999998765554432    2356799999997 6899999853                       


Q ss_pred             CCCCcccCCCCeEEEEeCCCCeEEEe-cccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeec-CCCCC
Q 015463          220 PSPIKITKDTGRVLKYDPTTKQTTVL-LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI-LPGYP  297 (406)
Q Consensus       220 ~~~~~~~~~~g~l~~~d~~t~~~~~~-~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~-l~g~p  297 (406)
                              ..++|+++++++...+.+ ..++..||||+++++++.+||+++..++|++++++|.   ..+.+.. ..+.|
T Consensus       143 --------~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~---~~~~~~~~~~~~P  211 (318)
T 3sov_A          143 --------EVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT---NRQAVVKGSLPHP  211 (318)
T ss_dssp             --------SSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECSCCSCE
T ss_pred             --------CCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC---ceEEEecCCCCCc
Confidence                    136899999986554444 4678899999999999999999999999999998863   2234443 34679


Q ss_pred             CceEECCCCCEEEEEccC
Q 015463          298 DNVRTNEKGEFWVAIHCR  315 (406)
Q Consensus       298 d~i~~d~~G~lwv~~~~~  315 (406)
                      ++++++.+ .+|++....
T Consensus       212 ~glav~~~-~lywtd~~~  228 (318)
T 3sov_A          212 FALTLFED-ILYWTDWST  228 (318)
T ss_dssp             EEEEEETT-EEEEEETTT
T ss_pred             eEEEEeCC-EEEEEecCC
Confidence            99999854 566666543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.64  E-value=1.9e-14  Score=131.84  Aligned_cols=186  Identities=22%  Similarity=0.311  Sum_probs=134.4

Q ss_pred             CcccCcceEEEcCCCCeeEEEecCCEEEEEeCC-c-eeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC
Q 015463           66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDGL-K-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (406)
Q Consensus        66 ~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g  143 (406)
                      .....|.+|+++++|+ +|++..+++|++++.+ . ...+..                      .....|.+|++++ +|
T Consensus        64 ~~~~~p~~i~~~~~g~-l~v~~~~~~i~~~d~~~~~~~~~~~----------------------~~~~~p~~i~~~~-~g  119 (270)
T 1rwi_B           64 NGLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQTVLPF----------------------DGLNYPEGLAVDT-QG  119 (270)
T ss_dssp             CSCCSCCCEEECTTCC-EEEEETTTEEEEECTTCSCCEECCC----------------------CSCSSEEEEEECT-TC
T ss_pred             CCcCCcceeEECCCCC-EEEEcCCCEEEEEeCCCceEeeeec----------------------CCcCCCcceEECC-CC
Confidence            3456899999999999 7777668899999876 2 111100                      1124689999998 89


Q ss_pred             cEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCC
Q 015463          144 DLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSP  222 (406)
Q Consensus       144 ~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  222 (406)
                      +|||++.. ++|++++..+.......    ...+..|++++++++|++|+++..                          
T Consensus       120 ~l~v~~~~~~~i~~~~~~~~~~~~~~----~~~~~~p~~i~~~~~g~l~v~~~~--------------------------  169 (270)
T 1rwi_B          120 AVYVADRGNNRVVKLAAGSKTQTVLP----FTGLNDPDGVAVDNSGNVYVTDTD--------------------------  169 (270)
T ss_dssp             CEEEEEGGGTEEEEECTTCCSCEECC----CCSCCSCCCEEECTTCCEEEEEGG--------------------------
T ss_pred             CEEEEECCCCEEEEEECCCceeEeec----cccCCCceeEEEeCCCCEEEEECC--------------------------
Confidence            99999875 57999986654333221    122457899999999999999853                          


Q ss_pred             CcccCCCCeEEEEeCCCCeEEEe-cccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee-cCCCCCCce
Q 015463          223 IKITKDTGRVLKYDPTTKQTTVL-LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPGYPDNV  300 (406)
Q Consensus       223 ~~~~~~~g~l~~~d~~t~~~~~~-~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~-~l~g~pd~i  300 (406)
                            .++|++||++++..... ...+..+.++++++++ .+|+++...++|.+++.++...   .... .....|.++
T Consensus       170 ------~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~~---~~~~~~~~~~p~~i  239 (270)
T 1rwi_B          170 ------NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTTS---TVLPFTGLNTPLAV  239 (270)
T ss_dssp             ------GTEEEEECTTTCCEEECCCSSCCSEEEEEECTTC-CEEEEETTTSCEEEECTTCSCC---EECCCCSCSCEEEE
T ss_pred             ------CCEEEEEecCCCceEeecccCCCCceEEEECCCC-CEEEEECCCCcEEEEcCCCCcc---eeeccCCCCCceeE
Confidence                  26799999987765543 2345778999999998 6899998888999998764321   1111 111358899


Q ss_pred             EECCCCCEEEEEccC
Q 015463          301 RTNEKGEFWVAIHCR  315 (406)
Q Consensus       301 ~~d~~G~lwv~~~~~  315 (406)
                      ++|++|++|++....
T Consensus       240 ~~~~~g~l~v~~~~~  254 (270)
T 1rwi_B          240 AVDSDRTVYVADRGN  254 (270)
T ss_dssp             EECTTCCEEEEEGGG
T ss_pred             EECCCCCEEEEECCC
Confidence            999999999998654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.64  E-value=1.5e-13  Score=132.22  Aligned_cols=195  Identities=13%  Similarity=0.168  Sum_probs=139.4

Q ss_pred             CCcceEEEEeCCCCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcC-CCCEEEEeCCCchhhhccccc
Q 015463          130 CGRPLGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKE  207 (406)
Q Consensus       130 ~~~p~gi~~d~~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~  207 (406)
                      ..+|.|+++|+.++.||++|.. +.|++++++++..+.+...    .+..|.++++|. +|+||+++..           
T Consensus        72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~----~~~~p~glavd~~~g~ly~~d~~-----------  136 (349)
T 3v64_C           72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST----GLESPGGLAVDWVHDKLYWTDSG-----------  136 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS----SCSCCCEEEEETTTTEEEEEETT-----------
T ss_pred             CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC----CCCCccEEEEecCCCeEEEEcCC-----------
Confidence            3569999999768999999976 5699999988765544321    245689999996 7899999964           


Q ss_pred             cccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec-ccCCCcceEEEecCCCEEEEEeCCC-CeEEEEEeeCCCCc
Q 015463          208 NIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSV-GRLHKYWLIGEKAG  285 (406)
Q Consensus       208 ~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~~ngi~l~~d~~~l~v~~t~~-~~i~~~~~~g~~~~  285 (406)
                                           .++|.++++++...+.+. ..+..|++++++|++..+||++... .+|++++++|..  
T Consensus       137 ---------------------~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~--  193 (349)
T 3v64_C          137 ---------------------TSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--  193 (349)
T ss_dssp             ---------------------TTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--
T ss_pred             ---------------------CCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC--
Confidence                                 367999998866555544 5678899999999888999999987 899999988632  


Q ss_pred             ceeeee-cCCCCCCceEECC-CCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCC
Q 015463          286 NLEAFA-ILPGYPDNVRTNE-KGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEG  363 (406)
Q Consensus       286 ~~~~~~-~l~g~pd~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g  363 (406)
                       .+.+. ..-..|+++++|+ +|+||++....+                                      .|.+++.+|
T Consensus       194 -~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~--------------------------------------~I~~~~~dG  234 (349)
T 3v64_C          194 -RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHH--------------------------------------VIERANLDG  234 (349)
T ss_dssp             -CEESCCSSCSCEEEEEEETTTTEEEEEETTTT--------------------------------------EEEEEETTS
T ss_pred             -cEEEEECCCCCcceEEEeCCCCEEEEEECCCC--------------------------------------EEEEEeCCC
Confidence             22232 2234699999995 677999975432                                      255666666


Q ss_pred             CEEEEEECCCCCeeeceeEEEEeCCEEEEecCCCCeEEEEe
Q 015463          364 KILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYD  404 (406)
Q Consensus       364 ~~~~~~~~~~g~~~~~~s~~~~~~g~Ly~Gs~~~~~i~~~~  404 (406)
                      ...+.+....   .....++...+++||+....++.|.+++
T Consensus       235 ~~~~~~~~~~---~~~P~giav~~~~ly~td~~~~~V~~~~  272 (349)
T 3v64_C          235 SHRKAVISQG---LPHPFAITVFEDSLYWTDWHTKSINSAN  272 (349)
T ss_dssp             CSCEEEECSS---CSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             CceEEEEeCC---CCCceEEEEECCEEEEecCCCCeEEEEE
Confidence            5433332211   1123344446788888888888888876

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.62  E-value=2.7e-13  Score=132.10  Aligned_cols=195  Identities=13%  Similarity=0.178  Sum_probs=139.8

Q ss_pred             CCcceEEEEeCCCCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcC-CCCEEEEeCCCchhhhccccc
Q 015463          130 CGRPLGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKE  207 (406)
Q Consensus       130 ~~~p~gi~~d~~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~  207 (406)
                      ..+|.|+++|+.++.||++|.. +.|++++++++..+.+...    .+..|+++++|. +|+||+++..           
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~----~~~~p~glavd~~~g~lY~~d~~-----------  179 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST----GLESPGGLAVDWVHDKLYWTDSG-----------  179 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS----SCSCCCCEEEETTTTEEEEEETT-----------
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC----CCCCccEEEEEeCCCeEEEEcCC-----------
Confidence            3569999999768899999976 5699999998766554321    245689999996 6899999964           


Q ss_pred             cccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEe-cccCCCcceEEEecCCCEEEEEeCCC-CeEEEEEeeCCCCc
Q 015463          208 NIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVL-LRNLQFPNGLSLSKDKSFFVFCEGSV-GRLHKYWLIGEKAG  285 (406)
Q Consensus       208 ~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~-~~~~~~~ngi~l~~d~~~l~v~~t~~-~~i~~~~~~g~~~~  285 (406)
                                           .++|.++++++...+.+ ..++..|++|+++|++..+||++... .+|++++++|..  
T Consensus       180 ---------------------~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~--  236 (386)
T 3v65_B          180 ---------------------TSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--  236 (386)
T ss_dssp             ---------------------TTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--
T ss_pred             ---------------------CCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC--
Confidence                                 25789999876654444 45678899999999999999999887 899999987632  


Q ss_pred             ceeeee-cCCCCCCceEEC-CCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCC
Q 015463          286 NLEAFA-ILPGYPDNVRTN-EKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEG  363 (406)
Q Consensus       286 ~~~~~~-~l~g~pd~i~~d-~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g  363 (406)
                       ...+. .....|++|++| .+++||++....+                                      .|.+++.+|
T Consensus       237 -~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~--------------------------------------~I~~~d~dG  277 (386)
T 3v65_B          237 -RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHH--------------------------------------VIERANLDG  277 (386)
T ss_dssp             -CEEEECSSCSCEEEEEEEGGGTEEEEEETTTT--------------------------------------EEEEECTTS
T ss_pred             -cEEEEECCCCCeeeEEEeCCCCEEEEEECCCC--------------------------------------EEEEEeCCC
Confidence             22232 233469999999 4677999975431                                      266677776


Q ss_pred             CEEEEEECCCCCeeeceeEEEEeCCEEEEecCCCCeEEEEe
Q 015463          364 KILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYD  404 (406)
Q Consensus       364 ~~~~~~~~~~g~~~~~~s~~~~~~g~Ly~Gs~~~~~i~~~~  404 (406)
                      ...+.+... +  .....++...+++||+....++.|.+++
T Consensus       278 ~~~~~~~~~-~--~~~P~giav~~~~ly~td~~~~~V~~~~  315 (386)
T 3v65_B          278 SHRKAVISQ-G--LPHPFAITVFEDSLYWTDWHTKSINSAN  315 (386)
T ss_dssp             CSCEEEECS-S--CSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             CeeEEEEEC-C--CCCceEEEEECCEEEEeeCCCCeEEEEE
Confidence            543333221 1  1123344446778888888888888876

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.62  E-value=6.8e-14  Score=134.68  Aligned_cols=211  Identities=17%  Similarity=0.175  Sum_probs=135.8

Q ss_pred             CcccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC---C
Q 015463           66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK---T  142 (406)
Q Consensus        66 ~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~---~  142 (406)
                      .++..|++|+++++|+ +|+....|+|++++....+.+....                 ......+.|+||+++++   +
T Consensus        28 ~~l~~P~~ia~~pdG~-l~V~e~~g~I~~i~~g~~~~~~~~~-----------------v~~~g~~~p~gia~~pdf~~~   89 (352)
T 2ism_A           28 GGLEVPWALAFLPDGG-MLIAERPGRIRLFREGRLSTYAELS-----------------VYHRGESGLLGLALHPRFPQE   89 (352)
T ss_dssp             CCCSCEEEEEECTTSC-EEEEETTTEEEEEETTEEEEEEECC-----------------CCCSTTCSEEEEEECTTTTTS
T ss_pred             CCCCCceEEEEcCCCe-EEEEeCCCeEEEEECCCccEeecce-----------------EeecCCCCceeEEECCCCCCC
Confidence            3578999999999999 8888888999999833433333211                 00111456999999984   4


Q ss_pred             CcEEEEeCC------CcEEEEeCCCCeE---EEcccccC--CcccccccceEEcCCCCEEEEeCCCchhhhccccccccc
Q 015463          143 GDLYIADAY------FGLMKVGPEGGLA---TSLATEAE--GVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPL  211 (406)
Q Consensus       143 g~L~Vad~~------~gl~~~d~~~~~~---~~l~~~~~--~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~  211 (406)
                      +.|||++..      ..|.+++.+++.+   +.+.....  ......+++|++++||+||+++......  ..      .
T Consensus        90 g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~--~~------~  161 (352)
T 2ism_A           90 PYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYER--EL------A  161 (352)
T ss_dssp             CEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCG--GG------G
T ss_pred             CEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCC--cc------c
Confidence            899999874      5799999876532   23332222  2235678999999999999997532110  00      0


Q ss_pred             cccccCCCCCCCcccCCCCeEEEEeCCC-------------CeEEEecccCCCcceEEEecCCCEEEEEeCCCCe-----
Q 015463          212 QLCSSLNDPSPIKITKDTGRVLKYDPTT-------------KQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGR-----  273 (406)
Q Consensus       212 ~~~~e~~~~~~~~~~~~~g~l~~~d~~t-------------~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~-----  273 (406)
                      ++.           ....|+|+++++++             ...+.+..++.+|+|++++++...||+++...++     
T Consensus       162 ~d~-----------~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~  230 (352)
T 2ism_A          162 QDL-----------ASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYG  230 (352)
T ss_dssp             GCT-----------TCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------C
T ss_pred             cCC-----------CCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCC
Confidence            000           23358999999985             2445677788999999999966679999987665     


Q ss_pred             ---EEEEEeeCCCCcce------------eeeecC--CCCCCceEECCCCCEEEEEccC
Q 015463          274 ---LHKYWLIGEKAGNL------------EAFAIL--PGYPDNVRTNEKGEFWVAIHCR  315 (406)
Q Consensus       274 ---i~~~~~~g~~~~~~------------~~~~~l--~g~pd~i~~d~~G~lwv~~~~~  315 (406)
                         |.++. .|.+.+..            ......  ...|.++++ .+|++|++...+
T Consensus       231 ~dei~~i~-~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~-~~G~l~v~~~~~  287 (352)
T 2ism_A          231 HDEVNLIV-PGGNYGWPRVVGRGNDPRYRDPLYFWPQGFPPGNLAF-FRGDLYVAGLRG  287 (352)
T ss_dssp             CCEEEEEC-TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCEEEEEE-ETTEEEEEETTT
T ss_pred             CeEEEEec-cCCcCCCCcccCCCCCCCCcCCeEecCCCCCCcceEE-ECCEEEEEECCC
Confidence               44432 23222211            111111  124678888 578899987654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.61  E-value=5.3e-14  Score=145.34  Aligned_cols=189  Identities=17%  Similarity=0.128  Sum_probs=146.3

Q ss_pred             cCcccCcceEEEcC-CCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC
Q 015463           65 LNQIQGPESMAFDP-LGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK  141 (406)
Q Consensus        65 ~~~~~gpe~i~~d~-~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~  141 (406)
                      ..++..|.+|++|+ ++.++|+...+++|++++.+  ..+.+...                      ....|.||++|..
T Consensus        33 ~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~----------------------g~~~P~GlAvD~~   90 (628)
T 4a0p_A           33 LTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF----------------------GLDYPEGMAVDWL   90 (628)
T ss_dssp             CCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS----------------------SCSCCCEEEEETT
T ss_pred             cCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeC----------------------CCCCcceEEEEeC
Confidence            34677899999997 46666778889999999876  33333211                      1356999999976


Q ss_pred             CCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcC-CCCEEEEeCCCchhhhccccccccccccccCCC
Q 015463          142 TGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKENIPLQLCSSLND  219 (406)
Q Consensus       142 ~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~  219 (406)
                      .++||++|.. +.|.+++++++..+.+..    ..+..|++|++|+ +|.||+++.+                       
T Consensus        91 ~~~LY~tD~~~~~I~v~~~dG~~~~~l~~----~~l~~P~~iavdp~~G~lY~tD~g-----------------------  143 (628)
T 4a0p_A           91 GKNLYWADTGTNRIEVSKLDGQHRQVLVW----KDLDSPRALALDPAEGFMYWTEWG-----------------------  143 (628)
T ss_dssp             TTEEEEEETTTTEEEEEETTSTTCEEEEC----SSCCCEEEEEEETTTTEEEEEECS-----------------------
T ss_pred             CCEEEEEECCCCEEEEEecCCCcEEEEEe----CCCCCcccEEEccCCCeEEEeCCC-----------------------
Confidence            7899999986 569999998776555432    2356799999997 7999999953                       


Q ss_pred             CCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCc
Q 015463          220 PSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDN  299 (406)
Q Consensus       220 ~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~  299 (406)
                              ..++|+++++++...+.+...+..|+||+++++++.|||+++..++|++++++|...   +++......|.+
T Consensus       144 --------~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~---~v~~~~l~~P~g  212 (628)
T 4a0p_A          144 --------GKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR---EVIADDLPHPFG  212 (628)
T ss_dssp             --------SSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEEECCSCEEE
T ss_pred             --------CCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce---EEeeccCCCceE
Confidence                    136899999987777777788999999999999999999999999999999987422   455543456999


Q ss_pred             eEECCCCCEEEEEcc
Q 015463          300 VRTNEKGEFWVAIHC  314 (406)
Q Consensus       300 i~~d~~G~lwv~~~~  314 (406)
                      ++++. +++|++...
T Consensus       213 lav~~-~~ly~tD~~  226 (628)
T 4a0p_A          213 LTQYQ-DYIYWTDWS  226 (628)
T ss_dssp             EEEET-TEEEEEETT
T ss_pred             EEEEC-CEEEEecCC
Confidence            99986 678888653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.61  E-value=1.2e-13  Score=135.23  Aligned_cols=189  Identities=15%  Similarity=0.144  Sum_probs=138.8

Q ss_pred             CcccCcceEEEcC-CCCeeEEEecCCEEEEEeCCc------eeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEE
Q 015463           66 NQIQGPESMAFDP-LGRGPYTGVADGRILFWDGLK------WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRF  138 (406)
Q Consensus        66 ~~~~gpe~i~~d~-~g~~ly~g~~~g~I~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~  138 (406)
                      ..+..|.+|++|+ ++.++|+...+++|++++.+.      .+.+.                      ......|.||++
T Consensus       109 ~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~----------------------~~~~~~p~glav  166 (400)
T 3p5b_L          109 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI----------------------SRDIQAPDGLAV  166 (400)
T ss_dssp             CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE----------------------CSSCSCEEEEEE
T ss_pred             cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE----------------------eCCCCCcccEEE
Confidence            4567899999996 566677788889999998762      11111                      112456999999


Q ss_pred             eCCCCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcC-CCCEEEEeCCCchhhhcccccccccccccc
Q 015463          139 DKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKENIPLQLCSS  216 (406)
Q Consensus       139 d~~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e  216 (406)
                      |..+++||++|.. +.|.+++++++..+.+...    .+..|++|++|+ +|.||+++..                    
T Consensus       167 D~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~----~~~~P~~iavdp~~g~ly~td~~--------------------  222 (400)
T 3p5b_L          167 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWG--------------------  222 (400)
T ss_dssp             ETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC----SSCCEEEEEEETTTTEEEEEECS--------------------
T ss_pred             EecCCceEEEECCCCeEEEEeCCCCceEEEEeC----CCCCcceEEEecccCeEEEEeCC--------------------
Confidence            9767899999986 5799999998766655432    355799999997 6899999853                    


Q ss_pred             CCCCCCCcccCCCCeEEEEeCCCCeEEEe-cccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeec---
Q 015463          217 LNDPSPIKITKDTGRVLKYDPTTKQTTVL-LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI---  292 (406)
Q Consensus       217 ~~~~~~~~~~~~~g~l~~~d~~t~~~~~~-~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~---  292 (406)
                                 ..++|++++.++...+.+ ..++..|+||+++++++.|||+++..++|++++++|.   ..+.+..   
T Consensus       223 -----------~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~---~~~~~~~~~~  288 (400)
T 3p5b_L          223 -----------TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG---NRKTILEDEK  288 (400)
T ss_dssp             -----------SSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---CCEEEEECSS
T ss_pred             -----------CCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC---ccEEEEeCCC
Confidence                       125799999986555554 4567899999999999999999999999999998863   2233332   


Q ss_pred             CCCCCCceEECCCCCEEEEEccC
Q 015463          293 LPGYPDNVRTNEKGEFWVAIHCR  315 (406)
Q Consensus       293 l~g~pd~i~~d~~G~lwv~~~~~  315 (406)
                      ..+.|.+++++. +.+|++....
T Consensus       289 ~l~~P~gl~v~~-~~lywtd~~~  310 (400)
T 3p5b_L          289 RLAHPFSLAVFE-DKVFWTDIIN  310 (400)
T ss_dssp             TTSSEEEEEEET-TEEEEEESSS
T ss_pred             CCCCCEEEEEeC-CEEEEecCCC
Confidence            234688999964 4566666544

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.61  E-value=4.5e-13  Score=123.29  Aligned_cols=194  Identities=16%  Similarity=0.160  Sum_probs=137.7

Q ss_pred             CcceEEEEeCCCCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCC-CCEEEEeCCCchhhhcccccc
Q 015463          131 GRPLGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDE-GNVYFTDSSTNYQRRQMQKEN  208 (406)
Q Consensus       131 ~~p~gi~~d~~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~d-G~ly~t~~~~~~~~~~~~~~~  208 (406)
                      .+|.|+++|+++++||+++.. +.|++++++++..+.+..    ..+..|+++++|++ |+||+++..            
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~----~~~~~p~~ia~d~~~~~lyv~d~~------------   99 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR----QDLGSPEGIALDHLGRTIFWTDSQ------------   99 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC----TTCCCEEEEEEETTTTEEEEEETT------------
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE----CCCCCccEEEEEecCCeEEEEECC------------
Confidence            468899999867899999986 569999998775443321    12457899999985 789999864            


Q ss_pred             ccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec-ccCCCcceEEEecCCCEEEEEeCC--CCeEEEEEeeCCCCc
Q 015463          209 IPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGS--VGRLHKYWLIGEKAG  285 (406)
Q Consensus       209 ~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~~ngi~l~~d~~~l~v~~t~--~~~i~~~~~~g~~~~  285 (406)
                                          .++|.+++.++...+.+. .++..|+++++++++..+||++..  .++|++++++|..  
T Consensus       100 --------------------~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~--  157 (267)
T 1npe_A          100 --------------------LDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN--  157 (267)
T ss_dssp             --------------------TTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC--
T ss_pred             --------------------CCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC--
Confidence                                367999998765444443 456789999999988899999976  5799999987532  


Q ss_pred             ceeeee-cCCCCCCceEECCC-CCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCC
Q 015463          286 NLEAFA-ILPGYPDNVRTNEK-GEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEG  363 (406)
Q Consensus       286 ~~~~~~-~l~g~pd~i~~d~~-G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g  363 (406)
                       .+.+. .....|.++++|++ +++|++.....                                      .|.+++.+|
T Consensus       158 -~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~--------------------------------------~I~~~~~~g  198 (267)
T 1npe_A          158 -RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTH--------------------------------------RAECLNPAQ  198 (267)
T ss_dssp             -CEEEECTTCSCEEEEEEETTTTEEEEEETTTT--------------------------------------EEEEEETTE
T ss_pred             -cEEEEECCCCCCcEEEEcCCCCEEEEEECCCC--------------------------------------EEEEEecCC
Confidence             22332 22356999999986 46999986432                                      256667776


Q ss_pred             CEEEEEECCCCCeeeceeEEEEeCCEEEEecCCCCeEEEEeC
Q 015463          364 KILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDL  405 (406)
Q Consensus       364 ~~~~~~~~~~g~~~~~~s~~~~~~g~Ly~Gs~~~~~i~~~~~  405 (406)
                      .....+...-.    ....+...+++||+....++.|.+++.
T Consensus       199 ~~~~~~~~~~~----~P~gi~~d~~~lyva~~~~~~v~~~d~  236 (267)
T 1npe_A          199 PGRRKVLEGLQ----YPFAVTSYGKNLYYTDWKTNSVIAMDL  236 (267)
T ss_dssp             EEEEEEEECCC----SEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             CceEEEecCCC----CceEEEEeCCEEEEEECCCCeEEEEeC
Confidence            54444332111    223444567899999888888988875

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.60  E-value=4.8e-13  Score=133.06  Aligned_cols=245  Identities=15%  Similarity=0.158  Sum_probs=165.2

Q ss_pred             cCcccCcceEEEcC--CCCeeEEEec-CCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEE-
Q 015463           65 LNQIQGPESMAFDP--LGRGPYTGVA-DGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRF-  138 (406)
Q Consensus        65 ~~~~~gpe~i~~d~--~g~~ly~g~~-~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~-  138 (406)
                      ...+..|..|++||  +++ ||+... +++|.+++.+  .++.+.....                   ....+|.+|++ 
T Consensus       135 ~~~~~~p~~la~dp~~~~~-Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~-------------------~~~~~p~~ia~~  194 (496)
T 3kya_A          135 CCGFSDNGRLAFDPLNKDH-LYICYDGHKAIQLIDLKNRMLSSPLNINT-------------------IPTNRIRSIAFN  194 (496)
T ss_dssp             CBCCCSEEEEEEETTEEEE-EEEEEETEEEEEEEETTTTEEEEEECCTT-------------------SSCSBEEEEEEC
T ss_pred             ccccCCCCEEEEccCCCCE-EEEEECCCCeEEEEECCCCEEEEEEccCc-------------------cccCCCcEEEEe
Confidence            55677899999997  355 777655 4789999976  4544432210                   11357999999 


Q ss_pred             ------eCCCCc-EEEEeCCC-------cEEEEeCCC-CeEE------EcccccCCcccccccceEEcC-CCCEEEEeCC
Q 015463          139 ------DKKTGD-LYIADAYF-------GLMKVGPEG-GLAT------SLATEAEGVPLRFTNDLDIDD-EGNVYFTDSS  196 (406)
Q Consensus       139 ------d~~~g~-L~Vad~~~-------gl~~~d~~~-~~~~------~l~~~~~~~~~~~~~~l~~d~-dG~ly~t~~~  196 (406)
                            ++ +|+ |||++...       .++.++++. +.+.      .+.      .+..|+++++++ +|.||+++..
T Consensus       195 ~~~~~~d~-~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~------~~~~p~giavdp~~g~LYvtd~~  267 (496)
T 3kya_A          195 KKIEGYAD-EAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA------AYKQCNGATIHPINGELYFNSYE  267 (496)
T ss_dssp             CCBTTTBC-TTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE------EESCCCCEEECTTTCCEEEEETT
T ss_pred             ecccccCC-CCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeec------cCCCceEEEEcCCCCeEEEEECC
Confidence                  98 565 99999864       378887554 2321      111      245789999999 7899999864


Q ss_pred             CchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCC-------CCeE------------EEe--cccCCCcceE
Q 015463          197 TNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPT-------TKQT------------TVL--LRNLQFPNGL  255 (406)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~-------t~~~------------~~~--~~~~~~~ngi  255 (406)
                                                      .++|++||++       ++..            +.+  ......|.+|
T Consensus       268 --------------------------------~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~i  315 (496)
T 3kya_A          268 --------------------------------KGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQI  315 (496)
T ss_dssp             --------------------------------TTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEE
T ss_pred             --------------------------------CCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEE
Confidence                                            3789999997       5654            122  1223457899


Q ss_pred             EEecCCCEEEEEeCCCCeEEEEEeeCCCC--cceeeeec---CCC------------CCC-ceEEC-------CCCCEEE
Q 015463          256 SLSKDKSFFVFCEGSVGRLHKYWLIGEKA--GNLEAFAI---LPG------------YPD-NVRTN-------EKGEFWV  310 (406)
Q Consensus       256 ~l~~d~~~l~v~~t~~~~i~~~~~~g~~~--~~~~~~~~---l~g------------~pd-~i~~d-------~~G~lwv  310 (406)
                      +++++++.+|++++.+++|++++.++...  .....++.   ..|            .|. +++.|       .+|+|||
T Consensus       316 a~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyV  395 (496)
T 3kya_A          316 FIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYF  395 (496)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEE
T ss_pred             EEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEE
Confidence            99999999999999999999988775321  11123321   112            366 67776       6789999


Q ss_pred             EEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCCEEEEEECC--------------CC--
Q 015463          311 AIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDS--------------KG--  374 (406)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~--------------~g--  374 (406)
                      +....+                                      .|.+++++|.+....-..              +|  
T Consensus       396 aD~~N~--------------------------------------rIr~i~~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~  437 (496)
T 3kya_A          396 VDRLNF--------------------------------------CVRKVTPEGIVSTYAGRGASTSLADGNQWGTDDGDL  437 (496)
T ss_dssp             EEGGGT--------------------------------------EEEEECTTCBEEEEEESCTTHHHHHSCSCCCCCEET
T ss_pred             EECCCC--------------------------------------EEEEEeCCCCEEEEecccccccccCccccccCCCCc
Confidence            986542                                      367788888665554321              22  


Q ss_pred             ---CeeeceeEEEEe--CCEEEEecCCCCeEEEEeCC
Q 015463          375 ---KVVKAISEVEEK--DGKLWMGSVLMPFVAVYDLS  406 (406)
Q Consensus       375 ---~~~~~~s~~~~~--~g~Ly~Gs~~~~~i~~~~~~  406 (406)
                         ..+...+.+...  +|.||+....+++|.+++++
T Consensus       438 ~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~  474 (496)
T 3kya_A          438 REVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISME  474 (496)
T ss_dssp             TTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             hhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECC
Confidence               012345566544  38999999999999998763

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=99.59  E-value=1.3e-13  Score=145.85  Aligned_cols=187  Identities=15%  Similarity=0.101  Sum_probs=117.4

Q ss_pred             ceEEEcCCCCeeEEEecCCEEEEEeCC-----ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEE
Q 015463           72 ESMAFDPLGRGPYTGVADGRILFWDGL-----KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (406)
Q Consensus        72 e~i~~d~~g~~ly~g~~~g~I~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~  146 (406)
                      .+|+.|++|+ +|+|+. +++++++..     .++.+.... .               ...........|..|. +|+||
T Consensus       327 ~~i~~D~~g~-lWiGt~-~Gl~~~~~~~~~~~~~~~~~~~~-~---------------~~~l~~~~v~~i~~d~-~g~lW  387 (758)
T 3ott_A          327 YSLFRDSKGF-YWFGGA-NGLIRFTDPAGERHDAIWYRMGD-K---------------TYPLSHNRIRHIYEDK-EQQLW  387 (758)
T ss_dssp             EEEEECTTCC-EEEEET-TEEEEESCTTSSCCCCEEECTTC-S---------------SSCCSCSCEEEEEECT-TSCEE
T ss_pred             EEEEEcCCCC-EEEeeC-CcceeecccccccceeEEeccCC-c---------------CCCCCCCceEEEEECC-CCCEE
Confidence            5788899999 999995 579999765     122221100 0               0001124467888998 89999


Q ss_pred             EEeCCCcEEEEeCCCCeEEEcccccC-C-cccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCc
Q 015463          147 IADAYFGLMKVGPEGGLATSLATEAE-G-VPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIK  224 (406)
Q Consensus       147 Vad~~~gl~~~d~~~~~~~~l~~~~~-~-~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  224 (406)
                      |++. .||+++++++++++.+..... + .+...+.+++.|++|+||+++..                            
T Consensus       388 igt~-~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~----------------------------  438 (758)
T 3ott_A          388 IATD-GSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCL----------------------------  438 (758)
T ss_dssp             EEET-TEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESS----------------------------
T ss_pred             EEeC-CcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECC----------------------------
Confidence            9994 699999999988876642211 1 12345778999999999999853                            


Q ss_pred             ccCCCCeEEEEeCCC------CeEE---Ee--cccCCC--cceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee
Q 015463          225 ITKDTGRVLKYDPTT------KQTT---VL--LRNLQF--PNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA  291 (406)
Q Consensus       225 ~~~~~g~l~~~d~~t------~~~~---~~--~~~~~~--~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~  291 (406)
                           ++|++||+++      +.+.   .+  ..++..  ...+..++++. +|+...+.++|.+++.+.   +..+.+.
T Consensus       439 -----~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWi~~~t~~Gl~~~d~~~---~~~~~~~  509 (758)
T 3ott_A          439 -----GGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGN-VWVLLYNNKGIDKINPRT---REVTKLF  509 (758)
T ss_dssp             -----SCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSC-EEEEETTCSSEEEEETTT---TEEEEEC
T ss_pred             -----CceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCC-EEEEccCCCCcEEEeCCC---CceEEec
Confidence                 5699998763      2221   11  122322  23455555564 666222247899998642   3333332


Q ss_pred             -c-CC--CCCCceEECCCCCEEEEEccC
Q 015463          292 -I-LP--GYPDNVRTNEKGEFWVAIHCR  315 (406)
Q Consensus       292 -~-l~--g~pd~i~~d~~G~lwv~~~~~  315 (406)
                       + +.  ..+..+..|++|+||+++..+
T Consensus       510 ~~~~~~~~~~~~i~~d~~g~lWigt~~G  537 (758)
T 3ott_A          510 ADELTGEKSPNYLLCDEDGLLWVGFHGG  537 (758)
T ss_dssp             TTTSCGGGCEEEEEECTTSCEEEEETTE
T ss_pred             CCCcCCCcccceEEECCCCCEEEEecCc
Confidence             1 11  234457889999999999655

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.59  E-value=8.3e-14  Score=129.05  Aligned_cols=184  Identities=14%  Similarity=0.279  Sum_probs=130.8

Q ss_pred             cccCcceEEE-cCCCCeeEEEec--CCEEEEEeCC-cee-EEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC
Q 015463           67 QIQGPESMAF-DPLGRGPYTGVA--DGRILFWDGL-KWT-DFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK  141 (406)
Q Consensus        67 ~~~gpe~i~~-d~~g~~ly~g~~--~g~I~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~  141 (406)
                      .+..|.++++ +++|+ +|++..  +++|.+++.+ ... .+.  .                    .....|.+|++++ 
T Consensus        75 ~~~~p~~i~~~~~~g~-l~v~~~~~~~~i~~~d~~g~~~~~~~--~--------------------~~~~~~~~i~~~~-  130 (286)
T 1q7f_A           75 QLLYPNRVAVVRNSGD-IIVTERSPTHQIQIYNQYGQFVRKFG--A--------------------TILQHPRGVTVDN-  130 (286)
T ss_dssp             CBSSEEEEEEETTTTE-EEEEECGGGCEEEEECTTSCEEEEEC--T--------------------TTCSCEEEEEECT-
T ss_pred             cccCceEEEEEcCCCe-EEEEcCCCCCEEEEECCCCcEEEEec--C--------------------ccCCCceEEEEeC-
Confidence            4567999999 57777 777764  7899999866 322 220  0                    0124689999999 


Q ss_pred             CCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCC
Q 015463          142 TGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDP  220 (406)
Q Consensus       142 ~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~  220 (406)
                      +|++||++.. +.|+++++++..+..+...   ..+..|++++++++|++|+++..                        
T Consensus       131 ~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~---~~~~~p~~i~~~~~g~l~v~~~~------------------------  183 (286)
T 1q7f_A          131 KGRIIVVECKVMRVIIFDQNGNVLHKFGCS---KHLEFPNGVVVNDKQEIFISDNR------------------------  183 (286)
T ss_dssp             TSCEEEEETTTTEEEEECTTSCEEEEEECT---TTCSSEEEEEECSSSEEEEEEGG------------------------
T ss_pred             CCCEEEEECCCCEEEEEcCCCCEEEEeCCC---CccCCcEEEEECCCCCEEEEECC------------------------
Confidence            8999999875 5799999876655544221   23456899999999999999853                        


Q ss_pred             CCCcccCCCCeEEEEeCCCCeEEEeccc--CCCcceEEEecCCCEEEEEeCCCC-eEEEEEeeCCCCcceeeeec-C-CC
Q 015463          221 SPIKITKDTGRVLKYDPTTKQTTVLLRN--LQFPNGLSLSKDKSFFVFCEGSVG-RLHKYWLIGEKAGNLEAFAI-L-PG  295 (406)
Q Consensus       221 ~~~~~~~~~g~l~~~d~~t~~~~~~~~~--~~~~ngi~l~~d~~~l~v~~t~~~-~i~~~~~~g~~~~~~~~~~~-l-~g  295 (406)
                              .++|.+||+++.....+...  +..|.++++++|++ +|+++...+ +|.+|+.++.   ....+.. . ..
T Consensus       184 --------~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~-l~v~~~~~~~~i~~~~~~g~---~~~~~~~~~~~~  251 (286)
T 1q7f_A          184 --------AHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQDGQ---LISALESKVKHA  251 (286)
T ss_dssp             --------GTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTTSC---EEEEEEESSCCS
T ss_pred             --------CCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCC-EEEEeCCCCEEEEEECCCCC---EEEEEcccCCCC
Confidence                    26799999976555555322  46789999999985 888887765 9999986542   1222221 1 12


Q ss_pred             CCCceEECCCCCEEEEEc
Q 015463          296 YPDNVRTNEKGEFWVAIH  313 (406)
Q Consensus       296 ~pd~i~~d~~G~lwv~~~  313 (406)
                      .|.+++++++|++||+..
T Consensus       252 ~~~~i~~~~~g~l~vs~~  269 (286)
T 1q7f_A          252 QCFDVALMDDGSVVLASK  269 (286)
T ss_dssp             CEEEEEEETTTEEEEEET
T ss_pred             cceeEEECCCCcEEEECC
Confidence            467899999999999953

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.58  E-value=1.2e-12  Score=124.09  Aligned_cols=198  Identities=12%  Similarity=0.162  Sum_probs=134.3

Q ss_pred             CCcceEEEEeCCCCcEEEEeCC-CcEEEEeCCC----CeEEEcccccCCcccccccceEEcC-CCCEEEEeCCCchhhhc
Q 015463          130 CGRPLGLRFDKKTGDLYIADAY-FGLMKVGPEG----GLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQ  203 (406)
Q Consensus       130 ~~~p~gi~~d~~~g~L~Vad~~-~gl~~~d~~~----~~~~~l~~~~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~  203 (406)
                      ..+|.|+++|+.++.||++|.. +.|+++++++    ...+.+..    ..+..|.++++|. +|+||+++..       
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~----~~~~~p~glavd~~~~~ly~~d~~-------   97 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS----RDIQAPDGLAVDWIHSNIYWTDSV-------   97 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC----SSCSCCCEEEEETTTTEEEEEETT-------
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe----CCCCCcCEEEEeecCCeEEEEECC-------
Confidence            4669999999867899999986 5799999886    22222211    1245789999995 7799999864       


Q ss_pred             cccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec-ccCCCcceEEEecCCCEEEEEeCCC-CeEEEEEeeC
Q 015463          204 MQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSV-GRLHKYWLIG  281 (406)
Q Consensus       204 ~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~~ngi~l~~d~~~l~v~~t~~-~~i~~~~~~g  281 (406)
                                               .++|.++++++...+.+. ..+..|++++++|++..+||++... ++|++++++|
T Consensus        98 -------------------------~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG  152 (316)
T 1ijq_A           98 -------------------------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  152 (316)
T ss_dssp             -------------------------TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             -------------------------CCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC
Confidence                                     367999999866655554 4678899999999888999999865 7999999876


Q ss_pred             CCCcceeeee-cCCCCCCceEECC-CCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEE
Q 015463          282 EKAGNLEAFA-ILPGYPDNVRTNE-KGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKY  359 (406)
Q Consensus       282 ~~~~~~~~~~-~l~g~pd~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~  359 (406)
                      ..   .+.+. ..-..|+++++|+ +++||++.....                                      .|.++
T Consensus       153 ~~---~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~--------------------------------------~I~~~  191 (316)
T 1ijq_A          153 VD---IYSLVTENIQWPNGITLDLLSGRLYWVDSKLH--------------------------------------SISSI  191 (316)
T ss_dssp             CC---EEEEECSSCSCEEEEEEETTTTEEEEEETTTT--------------------------------------EEEEE
T ss_pred             CC---eEEEEECCCCCceEEEEeccCCEEEEEECCCC--------------------------------------eEEEE
Confidence            32   22333 2235699999995 567999875431                                      25556


Q ss_pred             CCCCCEEEEEECCCCCeeeceeEEEEeCCEEEEecCCCCeEEEEeC
Q 015463          360 SPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDL  405 (406)
Q Consensus       360 d~~g~~~~~~~~~~g~~~~~~s~~~~~~g~Ly~Gs~~~~~i~~~~~  405 (406)
                      +.+|+..+.+....+. .....++...+++||+....++.|.+++.
T Consensus       192 d~dg~~~~~~~~~~~~-~~~P~giav~~~~ly~~d~~~~~V~~~~~  236 (316)
T 1ijq_A          192 DVNGGNRKTILEDEKR-LAHPFSLAVFEDKVFWTDIINEAIFSANR  236 (316)
T ss_dssp             ETTSCSCEEEEECTTT-TSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             ecCCCceEEEeecCCc-cCCcEEEEEECCEEEEEECCCCeEEEEeC
Confidence            6666444443221111 11223344456788888877778877763

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=99.57  E-value=3e-13  Score=143.13  Aligned_cols=228  Identities=18%  Similarity=0.226  Sum_probs=145.1

Q ss_pred             cceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463           71 PESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (406)
Q Consensus        71 pe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va  148 (406)
                      ..+|+.|++|+ ||+|+ +++|++++.+  .++.+......                ..........|..|. +|+|||+
T Consensus       375 v~~i~~d~~g~-lWigt-~~GL~~~~~~~~~~~~~~~~~~~----------------~~~~~~~v~~i~~d~-~g~lWig  435 (758)
T 3ott_A          375 IRHIYEDKEQQ-LWIAT-DGSINRYDYATRQFIHYNIVDNT----------------GTYNTNWTYYIFEDT-AGQLWIS  435 (758)
T ss_dssp             EEEEEECTTSC-EEEEE-TTEEEEEETTTTEEEEEEEECCC------------------CBSSSEEEEEECT-TSEEEEE
T ss_pred             eEEEEECCCCC-EEEEe-CCcHhhcCcCCCcEEEeecCCCc----------------CCCCCceEEEEEEcC-CCCEEEE
Confidence            46788999998 99999 5689999976  55555432110                000123466788888 8999999


Q ss_pred             eCCCcEEEEeCCC------CeEE---EcccccCCcccccccceEEcCCCCEEE--EeCCCchhhhccccccccccccccC
Q 015463          149 DAYFGLMKVGPEG------GLAT---SLATEAEGVPLRFTNDLDIDDEGNVYF--TDSSTNYQRRQMQKENIPLQLCSSL  217 (406)
Q Consensus       149 d~~~gl~~~d~~~------~~~~---~l~~~~~~~~~~~~~~l~~d~dG~ly~--t~~~~~~~~~~~~~~~~~~~~~~e~  217 (406)
                      +..+||+++++++      +.+.   .+. ...+.+...+.++..|++|+||+  ++.                      
T Consensus       436 T~~~Gl~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~i~~i~~d~~g~lWi~~~t~----------------------  492 (758)
T 3ott_A          436 TCLGGIFVVDKHKLMQSTSGQYIAEQNYS-VHNGLSGMFINQIIPDNEGNVWVLLYNN----------------------  492 (758)
T ss_dssp             ESSSCEEEEEHHHHHHCCSSEEECSEEEC-GGGTCSCSCEEEEEECTTSCEEEEETTC----------------------
T ss_pred             ECCCceEEEccccccccCCcceecccccc-cccccccceeeeEEEcCCCCEEEEccCC----------------------
Confidence            9888999999763      2221   111 11233334678899999999999  432                      


Q ss_pred             CCCCCCcccCCCCeEEEEeCCCCeEEEecc-cC---CCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecC
Q 015463          218 NDPSPIKITKDTGRVLKYDPTTKQTTVLLR-NL---QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAIL  293 (406)
Q Consensus       218 ~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~-~~---~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l  293 (406)
                                  ++|++||+++++++.+.. .+   ..++.+..+.++. +|++.  .++|.+|+.+..   ..+.+. .
T Consensus       493 ------------~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~-lWigt--~~Gl~~~~~~~~---~~~~~~-~  553 (758)
T 3ott_A          493 ------------KGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGL-LWVGF--HGGVMRINPKDE---SQQSIS-F  553 (758)
T ss_dssp             ------------SSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSC-EEEEE--TTEEEEECC--C---CCCBCC-C
T ss_pred             ------------CCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCC-EEEEe--cCceEEEecCCC---ceEEec-c
Confidence                        459999999998887642 22   1234566665564 66664  358999986532   222222 2


Q ss_pred             CCCCCc----eEECCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCCEEEEE
Q 015463          294 PGYPDN----VRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVL  369 (406)
Q Consensus       294 ~g~pd~----i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~  369 (406)
                      .|+|.+    +..+ +|+||+++..+                                        +.+||++...+..+
T Consensus       554 ~gl~~~~i~~i~~~-~g~lWi~t~~G----------------------------------------l~~~~~~~~~~~~~  592 (758)
T 3ott_A          554 GSFSNNEILSMTCV-KNSIWVSTTNG----------------------------------------LWIIDRKTMDARQQ  592 (758)
T ss_dssp             CC---CCEEEEEEE-TTEEEEEESSC----------------------------------------EEEEETTTCCEEEC
T ss_pred             cCCCccceEEEEEC-CCCEEEECCCC----------------------------------------eEEEcCCCceeEEe
Confidence            355543    4445 89999999766                                        78888887766666


Q ss_pred             ECCCCCeeeceeEEEE-eCCEEEEecCCCCeEEEEeC
Q 015463          370 EDSKGKVVKAISEVEE-KDGKLWMGSVLMPFVAVYDL  405 (406)
Q Consensus       370 ~~~~g~~~~~~s~~~~-~~g~Ly~Gs~~~~~i~~~~~  405 (406)
                      .-+++. +.  ..+.. .+|+||+|+.  +++.+++.
T Consensus       593 ~~~~~~-~~--~~~~~~~~G~l~fG~~--~Gl~~f~p  624 (758)
T 3ott_A          593 NMTNKR-FT--SLLFDPKEDCVYLGGA--DGFGISHS  624 (758)
T ss_dssp             --CCCC-CS--EEEEETTTTEEEEECB--SEEEEEEC
T ss_pred             cCCCCc-ee--eeEEECCCCcEEEecC--CceEEECh
Confidence            434432 11  22333 4899999995  68887764

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.56  E-value=1.1e-12  Score=135.34  Aligned_cols=192  Identities=17%  Similarity=0.112  Sum_probs=142.3

Q ss_pred             CcccCcceEEEcC-CCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCC
Q 015463           66 NQIQGPESMAFDP-LGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT  142 (406)
Q Consensus        66 ~~~~gpe~i~~d~-~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~  142 (406)
                      .++..|.+|++|+ +|.++|+....++|+|++.+  ..+.+..                      ...+.|.||++|...
T Consensus       346 ~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~----------------------~~~~~p~GlAvD~~~  403 (619)
T 3s94_A          346 EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVT----------------------AQIAHPDGIAVDWVA  403 (619)
T ss_dssp             SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC----------------------SSCSCCCEEEEETTT
T ss_pred             cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEE----------------------CCCCCcCceEEeccc
Confidence            4567788999997 56666777888999999877  3333321                      113679999999657


Q ss_pred             CcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcC-CCCEEEEeCCCchhhhccccccccccccccCCCC
Q 015463          143 GDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDP  220 (406)
Q Consensus       143 g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~  220 (406)
                      ++||++|.. +.|.+++.++...+.+..    ..+..|++|++|+ +|.||++|.+.                       
T Consensus       404 ~~lY~tD~~~~~I~v~~~~G~~~~~l~~----~~l~~P~~iavdp~~G~ly~tD~g~-----------------------  456 (619)
T 3s94_A          404 RNLYWTDTGTDRIEVTRLNGTMRKILIS----EDLEEPRAIVLDPMVGYMYWTDWGE-----------------------  456 (619)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEEC----TTCCSEEEEEEETTTTEEEEEECSS-----------------------
T ss_pred             CcEEEEeCCCCcEEEEeCCCCeEEEEEE----CCCCCeeeEEEEcCCCcEEEecCCC-----------------------
Confidence            899999987 568888888775555432    2367899999998 59999999641                       


Q ss_pred             CCCcccCCCCeEEEEeCCCCeEEEec-ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCc
Q 015463          221 SPIKITKDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDN  299 (406)
Q Consensus       221 ~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~  299 (406)
                              .++|.+.+.++...+.+. ..+..|+||+++++++.|||+++..++|.+++++|...  ..++......|.+
T Consensus       457 --------~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~--~~~~~~~l~~P~g  526 (619)
T 3s94_A          457 --------IPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGR--RVLVEDKIPHIFG  526 (619)
T ss_dssp             --------SCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC--EEEEECCCCSSCC
T ss_pred             --------CCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCce--EEEeccCCCCcEE
Confidence                    367999988755444443 46889999999999999999999999999999986422  2223233346999


Q ss_pred             eEECCCCCEEEEEccCCc
Q 015463          300 VRTNEKGEFWVAIHCRRS  317 (406)
Q Consensus       300 i~~d~~G~lwv~~~~~~~  317 (406)
                      ++++.+ .+|++....+.
T Consensus       527 lav~~~-~ly~tD~~~~~  543 (619)
T 3s94_A          527 FTLLGD-YVYWTDWQRRS  543 (619)
T ss_dssp             EEEETT-EEEEECTTSSC
T ss_pred             EEEECC-EEEEeecCCCe
Confidence            999754 89998765433

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.54  E-value=2e-12  Score=126.58  Aligned_cols=197  Identities=12%  Similarity=0.165  Sum_probs=134.6

Q ss_pred             CCcceEEEEeCCCCcEEEEeCC-CcEEEEeCCCCe----EEEcccccCCcccccccceEEcC-CCCEEEEeCCCchhhhc
Q 015463          130 CGRPLGLRFDKKTGDLYIADAY-FGLMKVGPEGGL----ATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQ  203 (406)
Q Consensus       130 ~~~p~gi~~d~~~g~L~Vad~~-~gl~~~d~~~~~----~~~l~~~~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~  203 (406)
                      ...|.+|++|..++.||++|.. +.|+++++++..    ...+.    ...+..|.+|++|. .|+||+++..       
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~----~~~~~~p~glavD~~~~~lY~~d~~-------  179 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI----SRDIQAPDGLAVDWIHSNIYWTDSV-------  179 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE----CSSCSCEEEEEEETTTTEEEEEETT-------
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE----eCCCCCcccEEEEecCCceEEEECC-------
Confidence            4568999999867899999986 569999987632    22222    12345789999997 7899999964       


Q ss_pred             cccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec-ccCCCcceEEEecCCCEEEEEeCCC-CeEEEEEeeC
Q 015463          204 MQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSV-GRLHKYWLIG  281 (406)
Q Consensus       204 ~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~~ngi~l~~d~~~l~v~~t~~-~~i~~~~~~g  281 (406)
                                               .++|.+++++++..+.+. ..+..|++|+++|.+..+||++... .+|++++++|
T Consensus       180 -------------------------~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG  234 (400)
T 3p5b_L          180 -------------------------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  234 (400)
T ss_dssp             -------------------------TTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS
T ss_pred             -------------------------CCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC
Confidence                                     368999999877666554 4778899999999888999999763 7899999886


Q ss_pred             CCCcceeeee-cCCCCCCceEECC-CCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEE
Q 015463          282 EKAGNLEAFA-ILPGYPDNVRTNE-KGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKY  359 (406)
Q Consensus       282 ~~~~~~~~~~-~l~g~pd~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~  359 (406)
                      ..   ...+. ..-..|.+|++|. +++||++.....                                      .|.++
T Consensus       235 ~~---~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~--------------------------------------~I~~~  273 (400)
T 3p5b_L          235 VD---IYSLVTENIQWPNGITLDLLSGRLYWVDSKLH--------------------------------------SISSI  273 (400)
T ss_dssp             CS---CEEEECSSCSCEEEEEEETTTTEEEEEETTTT--------------------------------------EEEEE
T ss_pred             Cc---cEEEEECCCCceEEEEEEeCCCEEEEEECCCC--------------------------------------EEEEE
Confidence            32   22232 2235699999994 567999875431                                      25556


Q ss_pred             CCCCCEEEEEECCCCCeeeceeEEEEeCCEEEEecCCCCeEEEEe
Q 015463          360 SPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYD  404 (406)
Q Consensus       360 d~~g~~~~~~~~~~g~~~~~~s~~~~~~g~Ly~Gs~~~~~i~~~~  404 (406)
                      |.+|...+.+....+. .....++...+++||+....++.|.+++
T Consensus       274 d~dG~~~~~~~~~~~~-l~~P~gl~v~~~~lywtd~~~~~V~~~~  317 (400)
T 3p5b_L          274 DVNGGNRKTILEDEKR-LAHPFSLAVFEDKVFWTDIINEAIFSAN  317 (400)
T ss_dssp             ETTSCCCEEEEECSST-TSSEEEEEEETTEEEEEESSSCSEEEEE
T ss_pred             eCCCCccEEEEeCCCC-CCCCEEEEEeCCEEEEecCCCCeEEEEE
Confidence            6666544443322111 1123344446778888877777777776

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.54  E-value=4.6e-13  Score=127.26  Aligned_cols=148  Identities=18%  Similarity=0.266  Sum_probs=109.2

Q ss_pred             cCCcceEEEEeCCCCcEEEEeCCC-------------------------cEEEEeCCCCeEEEcccccCCcccccccceE
Q 015463          129 ICGRPLGLRFDKKTGDLYIADAYF-------------------------GLMKVGPEGGLATSLATEAEGVPLRFTNDLD  183 (406)
Q Consensus       129 ~~~~p~gi~~d~~~g~L~Vad~~~-------------------------gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~  183 (406)
                      ..+.|.+|++++ +|++||++..+                         .|+++|++++++....   ....+..|++++
T Consensus        22 ~l~~v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~---~~~~~~~p~gia   97 (329)
T 3fvz_A           22 LPGQVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS---GKNLFYLPHGLS   97 (329)
T ss_dssp             CCSCEEEEEECT-TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE---CTTTCSSEEEEE
T ss_pred             ecCCceEEEECC-CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc---CCCccCCceEEE
Confidence            367799999999 89999999875                         4999999877664321   223466899999


Q ss_pred             EcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCC--eEEEec---------ccCCCc
Q 015463          184 IDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTK--QTTVLL---------RNLQFP  252 (406)
Q Consensus       184 ~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~--~~~~~~---------~~~~~~  252 (406)
                      ++++|++|+++..                                .++|++||+++.  .+..+.         ..+..|
T Consensus        98 ~d~~g~l~v~d~~--------------------------------~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P  145 (329)
T 3fvz_A           98 IDTDGNYWVTDVA--------------------------------LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQP  145 (329)
T ss_dssp             ECTTSCEEEEETT--------------------------------TTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSE
T ss_pred             ECCCCCEEEEECC--------------------------------CCEEEEEeCCCCeEEEEEecccCCCCCCccccCCC
Confidence            9999999999864                                367999998765  344442         335579


Q ss_pred             ceEEEecCCCEEEEEeC-CCCeEEEEEeeCCCCcceeeeec-C---------CCCCCceEECCC-CCEEEEEccC
Q 015463          253 NGLSLSKDKSFFVFCEG-SVGRLHKYWLIGEKAGNLEAFAI-L---------PGYPDNVRTNEK-GEFWVAIHCR  315 (406)
Q Consensus       253 ngi~l~~d~~~l~v~~t-~~~~i~~~~~~g~~~~~~~~~~~-l---------~g~pd~i~~d~~-G~lwv~~~~~  315 (406)
                      ++|++++++..+|++++ ..++|.+++.+|..   ...+.. .         ...|.++++|++ |++||+....
T Consensus       146 ~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~---~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~  217 (329)
T 3fvz_A          146 TDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKF---VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADREN  217 (329)
T ss_dssp             EEEEECTTTCCEEEEECSSCCEEEEECTTSCE---EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTT
T ss_pred             cEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCE---EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCC
Confidence            99999995556999997 68899999865431   111211 0         124889999998 8999998654

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.54  E-value=1.2e-12  Score=128.47  Aligned_cols=191  Identities=18%  Similarity=0.252  Sum_probs=133.6

Q ss_pred             ccCcceEEEcCCCCeeEEEecCC--EEEEEeCC-cee--EEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCC
Q 015463           68 IQGPESMAFDPLGRGPYTGVADG--RILFWDGL-KWT--DFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT  142 (406)
Q Consensus        68 ~~gpe~i~~d~~g~~ly~g~~~g--~I~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~  142 (406)
                      ...|. ++++++|+.+|+...++  +|++++.. .+.  .+....                   .....+|.++++++++
T Consensus       171 ~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~-------------------~~~~~~p~~iav~p~~  230 (409)
T 3hrp_A          171 FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLG-------------------STFSGKIGAVALDETE  230 (409)
T ss_dssp             CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECC-------------------TTSCSCCCBCEECTTS
T ss_pred             CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeecc-------------------chhcCCcEEEEEeCCC
Confidence            45677 99999998888887655  89999876 322  221100                   1124678999999877


Q ss_pred             CcEEEEeCCCcEEEEeCCCCeEEEcccc-cCCccccccc-ceEEcC-CCCEEEEeCCCchhhhccccccccccccccCCC
Q 015463          143 GDLYIADAYFGLMKVGPEGGLATSLATE-AEGVPLRFTN-DLDIDD-EGNVYFTDSSTNYQRRQMQKENIPLQLCSSLND  219 (406)
Q Consensus       143 g~L~Vad~~~gl~~~d~~~~~~~~l~~~-~~~~~~~~~~-~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~  219 (406)
                      |+||+++..+.|+++|++++....+... ..+.....|. ++++++ +|+||+++..                       
T Consensus       231 g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~-----------------------  287 (409)
T 3hrp_A          231 EWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN-----------------------  287 (409)
T ss_dssp             SEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT-----------------------
T ss_pred             CeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC-----------------------
Confidence            9999988766799999998876554211 1111112244 999999 6899999864                       


Q ss_pred             CCCCcccCCCCeEEEEeCCCCeEEEecc-c--------------CCCcceEEEecCCCEEEEEeC-CCCeEEEEEeeCCC
Q 015463          220 PSPIKITKDTGRVLKYDPTTKQTTVLLR-N--------------LQFPNGLSLSKDKSFFVFCEG-SVGRLHKYWLIGEK  283 (406)
Q Consensus       220 ~~~~~~~~~~g~l~~~d~~t~~~~~~~~-~--------------~~~~ngi~l~~d~~~l~v~~t-~~~~i~~~~~~g~~  283 (406)
                               .++|++++++.. ...+.. .              +..|+|+++++|++ +|++++ .+++|.++++..  
T Consensus       288 ---------~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~~~~~--  354 (409)
T 3hrp_A          288 ---------LSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKLDILD--  354 (409)
T ss_dssp             ---------TTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEEEEEETTT--
T ss_pred             ---------CCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEEECCC--
Confidence                     367999998744 444332 1              56799999999997 999999 899999998432  


Q ss_pred             CcceeeeecC---------------CCCCCceEECCCCCEEEEEccC
Q 015463          284 AGNLEAFAIL---------------PGYPDNVRTNEKGEFWVAIHCR  315 (406)
Q Consensus       284 ~~~~~~~~~l---------------~g~pd~i~~d~~G~lwv~~~~~  315 (406)
                       +....+...               -..|.++++|++|+|||+....
T Consensus       355 -G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n  400 (409)
T 3hrp_A          355 -GYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWG  400 (409)
T ss_dssp             -TEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTT
T ss_pred             -CEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCC
Confidence             222222211               1358899999999999998655

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.53  E-value=6.7e-13  Score=136.94  Aligned_cols=191  Identities=17%  Similarity=0.180  Sum_probs=136.9

Q ss_pred             eccCcccCcceEEEcC-CCCeeEEEecCCEEEEEeCC-c--eeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEE
Q 015463           63 KFLNQIQGPESMAFDP-LGRGPYTGVADGRILFWDGL-K--WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRF  138 (406)
Q Consensus        63 ~~~~~~~gpe~i~~d~-~g~~ly~g~~~g~I~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~  138 (406)
                      +...++..|.+|++++ ++.++|+...+++|.+++.+ .  .+.+..                      .....|.||++
T Consensus        34 ~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~----------------------~~~~~P~GlAv   91 (619)
T 3s94_A           34 IVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV----------------------SGLLSPDGLAC   91 (619)
T ss_dssp             --CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEEC----------------------SSCSCEEEEEE
T ss_pred             EEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEe----------------------CCCCCcCeEEE
Confidence            3445678899999997 45566778888999999876 2  122211                      11356999999


Q ss_pred             eCCCCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcC-CCCEEEEeCCCchhhhcccccccccccccc
Q 015463          139 DKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKENIPLQLCSS  216 (406)
Q Consensus       139 d~~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e  216 (406)
                      |..+++||+++.. +.|.+++.++...+.+..    ..+..|++|++|+ +|.||+||..                    
T Consensus        92 D~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~----~~l~~P~~Iavdp~~g~ly~tD~g--------------------  147 (619)
T 3s94_A           92 DWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW----QELDQPRAIALDPSSGFMYWTDWG--------------------  147 (619)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCSCEEEEC----SSCSCCCCEEEETTTTEEEEEECS--------------------
T ss_pred             EecCCEEEEEeCCCCEEEEEECCCCCEEEEEe----CCCCCCceEEEecCCCeEEEeccC--------------------
Confidence            9867899999987 568899998876555542    2356799999998 5899999953                    


Q ss_pred             CCCCCCCcccCCCCeEEEEeCCCCeEEEec-ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeec-CC
Q 015463          217 LNDPSPIKITKDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI-LP  294 (406)
Q Consensus       217 ~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~-l~  294 (406)
                                 ..++|.+.++++...+.+. ..+..|+||+++++++.|||+++..++|++++++|..   .+.+.. ..
T Consensus       148 -----------~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~---~~~~~~~~~  213 (619)
T 3s94_A          148 -----------EVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN---RQAVVKGSL  213 (619)
T ss_dssp             -----------SSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCE---EC-------
T ss_pred             -----------CCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCc---cEEEEeCCC
Confidence                       1367999998865555554 5788999999999999999999999999999988632   222222 23


Q ss_pred             CCCCceEECCCCCEEEEEcc
Q 015463          295 GYPDNVRTNEKGEFWVAIHC  314 (406)
Q Consensus       295 g~pd~i~~d~~G~lwv~~~~  314 (406)
                      ..|.+++++.+ ++|++...
T Consensus       214 ~~P~gi~~~~~-~ly~td~~  232 (619)
T 3s94_A          214 PHPFALTLFED-ILYWTDWS  232 (619)
T ss_dssp             --CCCEEESSS-EEEEECTT
T ss_pred             CCceEEEEeCC-EEEEecCC
Confidence            46999999866 77777543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.52  E-value=1.2e-11  Score=117.86  Aligned_cols=213  Identities=14%  Similarity=0.115  Sum_probs=133.2

Q ss_pred             ccCcccCcceEEEcCCCCeeEEEec-CCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeC
Q 015463           64 FLNQIQGPESMAFDPLGRGPYTGVA-DGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK  140 (406)
Q Consensus        64 ~~~~~~gpe~i~~d~~g~~ly~g~~-~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~  140 (406)
                      +..++..|++|++.++|+ +|+... .|+|++++.+  ..+.+.....                ......+.++||++++
T Consensus        27 va~gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~~~----------------v~~~g~~GllGia~~P   89 (347)
T 3das_A           27 VATGLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEVPG----------------VSPSGEGGLLGIALSP   89 (347)
T ss_dssp             EECCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTT----------------CCCBTTBSEEEEEECT
T ss_pred             eecCCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeecccCc----------------eeecCCCCceeeEecc
Confidence            355789999999999999 777766 8999999865  3333322110                0111246699999997


Q ss_pred             C---CCcEEEEeC---CCcEEEEeCCCC--------eEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccc
Q 015463          141 K---TGDLYIADA---YFGLMKVGPEGG--------LATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQK  206 (406)
Q Consensus       141 ~---~g~L~Vad~---~~gl~~~d~~~~--------~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~  206 (406)
                      +   ++.||++.+   .+.|.|+..+.+        ..+.+..........+...|++++||.|||+.........    
T Consensus        90 df~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~----  165 (347)
T 3das_A           90 DYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGL----  165 (347)
T ss_dssp             THHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGG----
T ss_pred             ccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCcc----
Confidence            3   588999743   357999977652        1233332222233457788999999999999643111000    


Q ss_pred             ccccccccccCCCCCCCcccCCCCeEEEEeCCCC--------eEEEecccCCCcceEEEecCCCEEEEEeCCCC---eEE
Q 015463          207 ENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTK--------QTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVG---RLH  275 (406)
Q Consensus       207 ~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~--------~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~---~i~  275 (406)
                          .++.           ....|+|+|+++++.        ..+++..++.+|+|+++++++ .||++|....   .|.
T Consensus       166 ----~qd~-----------~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G-~L~~~d~g~~~~deln  229 (347)
T 3das_A          166 ----SQDR-----------KSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQ-RLFASEFGQDTWDELN  229 (347)
T ss_dssp             ----TTCT-----------TCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTC-CEEEEECCSSSCEEEE
T ss_pred             ----ccCC-----------CCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCC-CEEEEecCCCCCceee
Confidence                0000           223588999999854        346778899999999999976 5899997653   344


Q ss_pred             EEEeeCCCCcceee------------eecC-C--CCCCceEECCCCCEEEEEccC
Q 015463          276 KYWLIGEKAGNLEA------------FAIL-P--GYPDNVRTNEKGEFWVAIHCR  315 (406)
Q Consensus       276 ~~~~~g~~~~~~~~------------~~~l-~--g~pd~i~~d~~G~lwv~~~~~  315 (406)
                      ++. .|.+.|....            .... +  .-|.++++. +|.+|++...+
T Consensus       230 ~i~-~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~~  282 (347)
T 3das_A          230 AIK-PGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYA-EGSVWMAGLRG  282 (347)
T ss_dssp             EEC-TTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEE-TTEEEEEESTT
T ss_pred             EEc-CCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEE-cCceeeccccC
Confidence            432 3333322111            0010 1  135577775 57888876543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=99.50  E-value=2.6e-12  Score=120.49  Aligned_cols=200  Identities=13%  Similarity=0.078  Sum_probs=128.0

Q ss_pred             cCcccCcceEEEcCCCCeeEEEe-cCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEE---
Q 015463           65 LNQIQGPESMAFDPLGRGPYTGV-ADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRF---  138 (406)
Q Consensus        65 ~~~~~gpe~i~~d~~g~~ly~g~-~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~---  138 (406)
                      ...-..||++.+|+....+|++. ++|+|.++++.  ..+++ ... +...             .......|.||.+   
T Consensus         9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~-~~s~-------------~g~~~~~~sGl~~~~~   73 (334)
T 2p9w_A            9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VID-GASS-------------NGDGEQQMSGLSLLTH   73 (334)
T ss_dssp             CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCT-TTCC-------------SSCCSEEEEEEEESSS
T ss_pred             cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecC-Cccc-------------cCCCcceeeEEEEecc
Confidence            34446899999997555588876 78999999987  33333 211 1000             0001234789999   


Q ss_pred             eCCCCcEEEE-eC-------------CCcEEEEeCC---CCeEEEcccc---cC------CcccccccceEEcCCCCEEE
Q 015463          139 DKKTGDLYIA-DA-------------YFGLMKVGPE---GGLATSLATE---AE------GVPLRFTNDLDIDDEGNVYF  192 (406)
Q Consensus       139 d~~~g~L~Va-d~-------------~~gl~~~d~~---~~~~~~l~~~---~~------~~~~~~~~~l~~d~dG~ly~  192 (406)
                      |+ +|+|||+ +.             ...|+++|++   +++.......   ..      +.....+|++++|++|++|+
T Consensus        74 D~-~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYV  152 (334)
T 2p9w_A           74 DN-SKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYV  152 (334)
T ss_dssp             SS-CCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEE
T ss_pred             CC-CCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEE
Confidence            78 6999994 42             3569999988   5543322211   11      11334699999999999999


Q ss_pred             EeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec------ccCCCcceEEEecCCCEEEE
Q 015463          193 TDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL------RNLQFPNGLSLSKDKSFFVF  266 (406)
Q Consensus       193 t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~------~~~~~~ngi~l~~d~~~l~v  266 (406)
                      +++.                               +.+.|++++++......+.      .....+|||++.||++.|++
T Consensus       153 t~s~-------------------------------~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv  201 (334)
T 2p9w_A          153 AFAL-------------------------------GMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIA  201 (334)
T ss_dssp             EEEE-------------------------------SSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEE
T ss_pred             eCCC-------------------------------CCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEE
Confidence            9852                               1167999999866555432      12344789999999999999


Q ss_pred             EeCCCCeEEEEEeeCCCCcceeee--e---cCCCCCCce-EECCCCCE-EEEEc
Q 015463          267 CEGSVGRLHKYWLIGEKAGNLEAF--A---ILPGYPDNV-RTNEKGEF-WVAIH  313 (406)
Q Consensus       267 ~~t~~~~i~~~~~~g~~~~~~~~~--~---~l~g~pd~i-~~d~~G~l-wv~~~  313 (406)
                      .++ .++|+++++..+..-...+-  .   .+. .|++| ....+|++ +|+..
T Consensus       202 ~~~-~g~L~~fD~~~pv~~~v~~~~~G~~~~~~-~~dgilp~~~~G~vllV~~~  253 (334)
T 2p9w_A          202 FGG-PRALTAFDVSKPYAWPEPVKINGDFGTLS-GTEKIVTVPVGNESVLVGAR  253 (334)
T ss_dssp             ESS-SSSEEEEECSSSSCCCEECEESSCCCCCT-TEEEEEEEEETTEEEEEEEE
T ss_pred             EcC-CCeEEEEcCCCCcceeecccccCCccccc-CcccccccccCCEEEEEEcC
Confidence            998 89999999873211001000  0   112 36775 55668886 66553

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.50  E-value=8e-12  Score=131.84  Aligned_cols=197  Identities=12%  Similarity=0.157  Sum_probs=134.0

Q ss_pred             CCcceEEEEeCCCCcEEEEeCC-CcEEEEeCCCCe----EEEcccccCCcccccccceEEcCCC-CEEEEeCCCchhhhc
Q 015463          130 CGRPLGLRFDKKTGDLYIADAY-FGLMKVGPEGGL----ATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRQ  203 (406)
Q Consensus       130 ~~~p~gi~~d~~~g~L~Vad~~-~gl~~~d~~~~~----~~~l~~~~~~~~~~~~~~l~~d~dG-~ly~t~~~~~~~~~~  203 (406)
                      ...|.+|+++..+++||++|.. +.|++++.++..    .+.+.    ...+..|.+|++|..+ +||++++.       
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi----~~~l~~P~GLAvD~~~~~LY~tD~~-------  491 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI----SRDIQAPDGLAVDWIHSNIYWTDSV-------  491 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE----CSSCSCCCEEEEETTTTEEEEEETT-------
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEE----ecCCCCcceeeeeecCCcEEEEecC-------
Confidence            3568999999867899999987 468999987632    12221    2235679999999754 99999964       


Q ss_pred             cccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec-ccCCCcceEEEecCCCEEEEEeCCC-CeEEEEEeeC
Q 015463          204 MQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSV-GRLHKYWLIG  281 (406)
Q Consensus       204 ~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~~ngi~l~~d~~~l~v~~t~~-~~i~~~~~~g  281 (406)
                                               .++|.++++++...+++. ..+..|++|++++.+..|||++... .+|++++++|
T Consensus       492 -------------------------~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG  546 (791)
T 3m0c_C          492 -------------------------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  546 (791)
T ss_dssp             -------------------------TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             -------------------------CCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC
Confidence                                     368999999877666654 5678899999999988999999765 7999999876


Q ss_pred             CCCcceeeee-cCCCCCCceEEC-CCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEE
Q 015463          282 EKAGNLEAFA-ILPGYPDNVRTN-EKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKY  359 (406)
Q Consensus       282 ~~~~~~~~~~-~l~g~pd~i~~d-~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~  359 (406)
                      ..   ...+. .....|.+|++| .+|+||++.....                                      .|.++
T Consensus       547 ~~---~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~--------------------------------------~I~~~  585 (791)
T 3m0c_C          547 VD---IYSLVTENIQWPNGITLDLLSGRLYWVDSKLH--------------------------------------SISSI  585 (791)
T ss_dssp             CC---EEEEECSSCSCEEEEEEETTTTEEEEEETTTT--------------------------------------EEEEE
T ss_pred             Cc---eEEEEeCCCCCceEEEEecCCCeEEEEeCCCC--------------------------------------cEEEE
Confidence            32   22333 223569999999 5677999875431                                      14455


Q ss_pred             CCCCCEEEEEECCCCCeeeceeEEEEeCCEEEEecCCCCeEEEEe
Q 015463          360 SPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYD  404 (406)
Q Consensus       360 d~~g~~~~~~~~~~g~~~~~~s~~~~~~g~Ly~Gs~~~~~i~~~~  404 (406)
                      +.+|.....+....+. .....++...+++||+....++.|.+++
T Consensus       586 d~dG~~~~~v~~~~~~-l~~P~glav~~~~lYwtD~~~~~I~~~d  629 (791)
T 3m0c_C          586 DVNGGNRKTILEDEKR-LAHPFSLAVFEDKVFWTDIINEAIFSAN  629 (791)
T ss_dssp             ETTSCSCEEEEECTTT-TSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             ecCCCceEEEecCCCc-cCCCCEEEEeCCEEEEEECCCCEEEEEe
Confidence            5665444333322221 1122344446667777777777777765

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.49  E-value=2.2e-11  Score=114.62  Aligned_cols=214  Identities=14%  Similarity=0.124  Sum_probs=132.9

Q ss_pred             CCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCCCcEEEEe
Q 015463           79 LGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVG  158 (406)
Q Consensus        79 ~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~~gl~~~d  158 (406)
                      +|+ +|+++.+++|++++.+....+.....                     ......+++++ +|+||+++..++|+++|
T Consensus       107 ~~~-l~v~t~~~~l~~~d~~g~~~~~~~~~---------------------~~~~~~~~~~~-~g~l~vgt~~~~l~~~d  163 (330)
T 3hxj_A          107 EDI-LYVTSMDGHLYAINTDGTEKWRFKTK---------------------KAIYATPIVSE-DGTIYVGSNDNYLYAIN  163 (330)
T ss_dssp             TTE-EEEECTTSEEEEECTTSCEEEEEECS---------------------SCCCSCCEECT-TSCEEEECTTSEEEEEC
T ss_pred             CCE-EEEEecCCEEEEEcCCCCEEEEEcCC---------------------CceeeeeEEcC-CCEEEEEcCCCEEEEEC
Confidence            555 89998888899998762111111110                     01122346676 78899998778999999


Q ss_pred             CCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCC
Q 015463          159 PEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPT  238 (406)
Q Consensus       159 ~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~  238 (406)
                      +++.....+..  .   ...+..+++|++|++|+++ .                                  +|+++|++
T Consensus       164 ~~g~~~~~~~~--~---~~~~~~~~~d~~g~l~v~t-~----------------------------------~l~~~d~~  203 (330)
T 3hxj_A          164 PDGTEKWRFKT--N---DAITSAASIGKDGTIYFGS-D----------------------------------KVYAINPD  203 (330)
T ss_dssp             TTSCEEEEEEC--S---SCCCSCCEECTTCCEEEES-S----------------------------------SEEEECTT
T ss_pred             CCCCEeEEEec--C---CCceeeeEEcCCCEEEEEe-C----------------------------------EEEEECCC
Confidence            88333222221  1   2245677888899999986 3                                  49999954


Q ss_pred             CCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCCCCEEEEEccCCcc
Q 015463          239 TKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSL  318 (406)
Q Consensus       239 t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~lwv~~~~~~~~  318 (406)
                      +...............+++++++. +|++.. .+.|++++.++.   ....+....+.+..+.+|.+|++|+++..+   
T Consensus       204 g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~-~~gl~~~~~~g~---~~~~~~~~~~~~~~~~~~~~g~l~v~t~~g---  275 (330)
T 3hxj_A          204 GTEKWNFYAGYWTVTRPAISEDGT-IYVTSL-DGHLYAINPDGT---EKWRFKTGKRIESSPVIGNTDTIYFGSYDG---  275 (330)
T ss_dssp             SCEEEEECCSSCCCSCCEECTTSC-EEEEET-TTEEEEECTTSC---EEEEEECSSCCCSCCEECTTSCEEEECTTC---
T ss_pred             CcEEEEEccCCcceeceEECCCCe-EEEEcC-CCeEEEECCCCC---EeEEeeCCCCccccceEcCCCeEEEecCCC---
Confidence            333333333333455677777764 666643 578988864332   111222223345667888899999998653   


Q ss_pred             hhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCCEEEEEECCCCCeeeceeEEEE-eCCEEEEecCCC
Q 015463          319 YSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEE-KDGKLWMGSVLM  397 (406)
Q Consensus       319 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~~~s~~~~-~~g~Ly~Gs~~~  397 (406)
                                                          .+.++|++|+.+..+..+..    .+.++.. .+|+||+|+. +
T Consensus       276 ------------------------------------gl~~~d~~g~~~~~~~~~~~----~~~~~~~d~~g~l~~gt~-~  314 (330)
T 3hxj_A          276 ------------------------------------HLYAINPDGTEKWNFETGSW----IIATPVIDENGTIYFGTR-N  314 (330)
T ss_dssp             ------------------------------------EEEEECTTSCEEEEEECSSC----CCSCCEECTTCCEEEECT-T
T ss_pred             ------------------------------------CEEEECCCCcEEEEEEcCCc----cccceEEcCCCEEEEEcC-C
Confidence                                                38889999998888764322    2344444 7899999996 4


Q ss_pred             CeEEEEe
Q 015463          398 PFVAVYD  404 (406)
Q Consensus       398 ~~i~~~~  404 (406)
                      ..+...+
T Consensus       315 G~~~~~~  321 (330)
T 3hxj_A          315 GKFYALF  321 (330)
T ss_dssp             SCEEEEE
T ss_pred             CeEEEEe
Confidence            4444443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.49  E-value=1.2e-12  Score=123.83  Aligned_cols=185  Identities=15%  Similarity=0.197  Sum_probs=126.9

Q ss_pred             cCcceEEEcC-CCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcE
Q 015463           69 QGPESMAFDP-LGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL  145 (406)
Q Consensus        69 ~gpe~i~~d~-~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L  145 (406)
                      ..|.+|++++ +|+ ||++...++|++++.+  .++.+......                  .....|.++++++++|+|
T Consensus        80 ~~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~~~~~~~~~~------------------~~~~~p~~i~~d~~~G~l  140 (322)
T 2fp8_A           80 GRTYDISYNLQNNQ-LYIVDCYYHLSVVGSEGGHATQLATSVDG------------------VPFKWLYAVTVDQRTGIV  140 (322)
T ss_dssp             CCEEEEEEETTTTE-EEEEETTTEEEEECTTCEECEEEESEETT------------------EECSCEEEEEECTTTCCE
T ss_pred             CCCceEEEcCCCCc-EEEEECCCCEEEEeCCCCEEEEecccCCC------------------CcccccceEEEecCCCEE
Confidence            4689999997 777 8988777789999876  33444321100                  113568999999745899


Q ss_pred             EEEeCC------------------CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhcccc
Q 015463          146 YIADAY------------------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQK  206 (406)
Q Consensus       146 ~Vad~~------------------~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~  206 (406)
                      ||++..                  .+|+++|+++++++.+..     .+..|++|+++++|+ ||++++.          
T Consensus       141 ~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-----~~~~p~gia~~~dg~~lyv~d~~----------  205 (322)
T 2fp8_A          141 YFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK-----ELHVPGGAEVSADSSFVLVAEFL----------  205 (322)
T ss_dssp             EEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE-----EESCCCEEEECTTSSEEEEEEGG----------
T ss_pred             EEECCcccccccccceehcccCCCceEEEEeCCCCEEEEecc-----CCccCcceEECCCCCEEEEEeCC----------
Confidence            999864                  359999998887665432     245799999999986 9999853          


Q ss_pred             ccccccccccCCCCCCCcccCCCCeEEEEeCCC---CeEEEecccCCCcceEEEecCCCEEEEEeCC----------CCe
Q 015463          207 ENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTT---KQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS----------VGR  273 (406)
Q Consensus       207 ~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t---~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~----------~~~  273 (406)
                                            .++|++|+.++   ++.+.+.. +..|+|++++++|+ +|++...          .++
T Consensus       206 ----------------------~~~I~~~~~~~~~~~~~~~~~~-~~gP~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~  261 (322)
T 2fp8_A          206 ----------------------SHQIVKYWLEGPKKGTAEVLVK-IPNPGNIKRNADGH-FWVSSSEELDGNMHGRVDPK  261 (322)
T ss_dssp             ----------------------GTEEEEEESSSTTTTCEEEEEE-CSSEEEEEECTTSC-EEEEEEEETTSSTTSCEEEE
T ss_pred             ----------------------CCeEEEEECCCCcCCccceEEe-CCCCCCeEECCCCC-EEEEecCcccccccCCCccE
Confidence                                  26799999875   34444433 22399999999996 8888754          467


Q ss_pred             EEEEEeeCCCCcceeeeecCC----CCCCceEECCCCCEEEEEccC
Q 015463          274 LHKYWLIGEKAGNLEAFAILP----GYPDNVRTNEKGEFWVAIHCR  315 (406)
Q Consensus       274 i~~~~~~g~~~~~~~~~~~l~----g~pd~i~~d~~G~lwv~~~~~  315 (406)
                      |.+++.+|.   ..+.+..-.    ..|.+++. .+|+|||+....
T Consensus       262 v~~~d~~G~---~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~  303 (322)
T 2fp8_A          262 GIKFDEFGN---ILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFH  303 (322)
T ss_dssp             EEEECTTSC---EEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSC
T ss_pred             EEEECCCCC---EEEEEECCCCCccccceEEEE-eCCEEEEeecCC
Confidence            888886532   122232211    23556666 478999997543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.49  E-value=3e-12  Score=135.12  Aligned_cols=193  Identities=14%  Similarity=0.122  Sum_probs=137.4

Q ss_pred             CcccCcceEEEcC-CCCeeEEEecCCEEEEEeCCcee---EEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC
Q 015463           66 NQIQGPESMAFDP-LGRGPYTGVADGRILFWDGLKWT---DFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK  141 (406)
Q Consensus        66 ~~~~gpe~i~~d~-~g~~ly~g~~~g~I~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~  141 (406)
                      ..+..|.+|++|. ++.++|+...+++|++++.+...   ....                   ........|.||++|..
T Consensus       421 ~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~-------------------vi~~~l~~P~GLAvD~~  481 (791)
T 3m0c_C          421 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT-------------------VISRDIQAPDGLAVDWI  481 (791)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE-------------------EECSSCSCCCEEEEETT
T ss_pred             cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeE-------------------EEecCCCCcceeeeeec
Confidence            4577899999997 56667778888999999876210   0000                   01112467999999985


Q ss_pred             CCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCC-CCEEEEeCCCchhhhccccccccccccccCCC
Q 015463          142 TGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDE-GNVYFTDSSTNYQRRQMQKENIPLQLCSSLND  219 (406)
Q Consensus       142 ~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~d-G~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~  219 (406)
                      .++||++|.. +.|.++++++...+.+...    .+..|++|++|+. |.||++++..                      
T Consensus       482 ~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~----~l~~P~gIaVDp~~g~LYwtD~g~----------------------  535 (791)
T 3m0c_C          482 HSNIYWTDSVLGTVSVADTKGVKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWGT----------------------  535 (791)
T ss_dssp             TTEEEEEETTTTEEEEEETTSSSEEEEEEC----TTCCEEEEEEETTTTEEEEEECSS----------------------
T ss_pred             CCcEEEEecCCCeEEEEeCCCCeEEEEEeC----CCCCcceEEEecCCCCEEEecCCC----------------------
Confidence            6799999987 5699999998776665432    2456999999984 8999999641                      


Q ss_pred             CCCCcccCCCCeEEEEeCCCCeEEEec-ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeec-C--CC
Q 015463          220 PSPIKITKDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI-L--PG  295 (406)
Q Consensus       220 ~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~-l--~g  295 (406)
                               .++|.+++.++...+++. .++..|+||+++++++.|||++...++|++++++|..   ...+.. .  -.
T Consensus       536 ---------~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~---~~~v~~~~~~l~  603 (791)
T 3m0c_C          536 ---------PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN---RKTILEDEKRLA  603 (791)
T ss_dssp             ---------SCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEEECTTTTS
T ss_pred             ---------CCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc---eEEEecCCCccC
Confidence                     257999999866555554 5678999999999899999999999999999988642   222322 1  12


Q ss_pred             CCCceEECCCCCEEEEEccCC
Q 015463          296 YPDNVRTNEKGEFWVAIHCRR  316 (406)
Q Consensus       296 ~pd~i~~d~~G~lwv~~~~~~  316 (406)
                      .|.+|+++ .++||++.....
T Consensus       604 ~P~glav~-~~~lYwtD~~~~  623 (791)
T 3m0c_C          604 HPFSLAVF-EDKVFWTDIINE  623 (791)
T ss_dssp             SEEEEEEE-TTEEEEEETTTT
T ss_pred             CCCEEEEe-CCEEEEEECCCC
Confidence            46677775 347888765443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.48  E-value=1.3e-13  Score=144.32  Aligned_cols=195  Identities=14%  Similarity=0.122  Sum_probs=133.9

Q ss_pred             CcccCcceEEEcCC-CCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc
Q 015463           66 NQIQGPESMAFDPL-GRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (406)
Q Consensus        66 ~~~~gpe~i~~d~~-g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~  144 (406)
                      ..+..|++|+++++ +.++|+...+++|++++.+....    ......            ........|.||++|..+++
T Consensus       403 ~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~----~~~~~~------------~i~~~~~~P~glavD~~~g~  466 (699)
T 1n7d_A          403 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG----VSSYDT------------VISRDIQAPDGLAVDWIHSN  466 (699)
T ss_dssp             CCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-----CCCCC------------BCCSCC--CCCEECCCSSSB
T ss_pred             ccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCC----CcceEE------------EEeCCCCCcceEEEEeeCCc
Confidence            35678999999975 45555667778999998652000    000000            11112356899999965789


Q ss_pred             EEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcC-CCCEEEEeCCCchhhhccccccccccccccCCCCCC
Q 015463          145 LYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSP  222 (406)
Q Consensus       145 L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  222 (406)
                      ||+++.. +.|.+++++++..+.+...    .+..|++|++|+ +|.||+++..                          
T Consensus       467 LY~tD~~~~~I~v~d~dg~~~~~l~~~----~~~~P~giavDp~~g~ly~td~~--------------------------  516 (699)
T 1n7d_A          467 IYWTDSVLGTVSVADTKGVKRKTLFRE----QGSKPRAIVVDPVHGFMYWTDWG--------------------------  516 (699)
T ss_dssp             CEECCTTTSCEEEEBSSSCCEEEECCC----SSCCCCCEECCSSSSCCEECCCS--------------------------
T ss_pred             EEEEeccCCeEEEEecCCCceEEEEeC----CCCCcceEEEccCCCcEEEcccC--------------------------
Confidence            9999876 5799999988766554321    245789999998 5799999853                          


Q ss_pred             CcccCCCCeEEEEeCCCCeEEEe-cccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeec---CCCCCC
Q 015463          223 IKITKDTGRVLKYDPTTKQTTVL-LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI---LPGYPD  298 (406)
Q Consensus       223 ~~~~~~~g~l~~~d~~t~~~~~~-~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~---l~g~pd  298 (406)
                           ..++|+++++++...+++ ...+..|+||+++++++.|||+++..++|++++++|.   ..+.+..   ..+.|.
T Consensus       517 -----~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~---~~~~~~~~~~~~~~P~  588 (699)
T 1n7d_A          517 -----TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG---NRKTILEDEKRLAHPF  588 (699)
T ss_dssp             -----SSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS---CCEEECCCSSSCSSCC
T ss_pred             -----CCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC---ceEEEEecCCcCCCce
Confidence                 125788888775444444 3568889999999999999999999999999998763   2233332   235699


Q ss_pred             ceEECCCCCEEEEEccC
Q 015463          299 NVRTNEKGEFWVAIHCR  315 (406)
Q Consensus       299 ~i~~d~~G~lwv~~~~~  315 (406)
                      ++++|.+ ++|++....
T Consensus       589 glavd~~-~lywtd~~~  604 (699)
T 1n7d_A          589 SLAVFED-KVFWTDIIN  604 (699)
T ss_dssp             CCEEETT-EEEEECSTT
T ss_pred             EeEEECC-EEEEEeCCC
Confidence            9999876 566665443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.48  E-value=8.3e-12  Score=116.25  Aligned_cols=183  Identities=13%  Similarity=0.154  Sum_probs=125.0

Q ss_pred             ccCcceEEEcCCCCeeEEEec-CCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc
Q 015463           68 IQGPESMAFDPLGRGPYTGVA-DGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (406)
Q Consensus        68 ~~gpe~i~~d~~g~~ly~g~~-~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~  144 (406)
                      ...|.+++++++|+ +|++.. +++|++++..  +++.+.....                  .....+|.++++++ +|+
T Consensus        68 ~~~~~~l~~~~dg~-l~v~~~~~~~i~~~d~~~g~~~~~~~~~~------------------~~~~~~~~~i~~d~-~G~  127 (296)
T 3e5z_A           68 SHHQNGHCLNKQGH-LIACSHGLRRLERQREPGGEWESIADSFE------------------GKKLNSPNDVCLAP-DGS  127 (296)
T ss_dssp             CSSEEEEEECTTCC-EEEEETTTTEEEEECSTTCCEEEEECEET------------------TEECCCCCCEEECT-TSC
T ss_pred             CCCcceeeECCCCc-EEEEecCCCeEEEEcCCCCcEEEEeeccC------------------CCCCCCCCCEEECC-CCC
Confidence            35689999999999 677665 5899999974  4444432110                  01135688999999 899


Q ss_pred             EEEEeC------------------CCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccc
Q 015463          145 LYIADA------------------YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQK  206 (406)
Q Consensus       145 L~Vad~------------------~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~  206 (406)
                      ||+++.                  ..+|++++++ ++++.+..     ....++++++++||+++++++.          
T Consensus       128 l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~-----~~~~~~gi~~s~dg~~lv~~~~----------  191 (296)
T 3e5z_A          128 LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIR-----DRVKPNGLAFLPSGNLLVSDTG----------  191 (296)
T ss_dssp             EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEEC-----CCSSEEEEEECTTSCEEEEETT----------
T ss_pred             EEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeec-----CCCCCccEEECCCCCEEEEeCC----------
Confidence            999764                  2479999988 55554432     2346889999999988777653          


Q ss_pred             ccccccccccCCCCCCCcccCCCCeEEEEeCC-CCeE----EEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463          207 ENIPLQLCSSLNDPSPIKITKDTGRVLKYDPT-TKQT----TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  281 (406)
Q Consensus       207 ~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~-t~~~----~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g  281 (406)
                                            .++|++|+.+ +++.    +.+......|.++++++|++ +|++.  .++|.+|+.+|
T Consensus       192 ----------------------~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~--~~~v~~~~~~g  246 (296)
T 3e5z_A          192 ----------------------DNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA--GDGVHVLTPDG  246 (296)
T ss_dssp             ----------------------TTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE--TTEEEEECTTS
T ss_pred             ----------------------CCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc--CCeEEEECCCC
Confidence                                  3678888875 4554    22222334678999999996 77876  68999998753


Q ss_pred             CCCcceeeeecCCCCCCceEE-CCCCC-EEEEEccC
Q 015463          282 EKAGNLEAFAILPGYPDNVRT-NEKGE-FWVAIHCR  315 (406)
Q Consensus       282 ~~~~~~~~~~~l~g~pd~i~~-d~~G~-lwv~~~~~  315 (406)
                      .   ....+..-.+ |.++++ +++|+ ||+++..+
T Consensus       247 ~---~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~  278 (296)
T 3e5z_A          247 D---ELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE  278 (296)
T ss_dssp             C---EEEEEECSSC-CCEEEEESTTSCEEEEEETTE
T ss_pred             C---EEEEEECCCC-ceeEEEECCCCCEEEEEcCCe
Confidence            2   1222222223 888888 46665 99998653

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.48  E-value=8.4e-12  Score=118.27  Aligned_cols=195  Identities=14%  Similarity=0.136  Sum_probs=134.0

Q ss_pred             CcceEEEEeCCCCcEEEEeCC-CcEEEEeCCCCeE-EEcccccCCcccccccceEEcC-CCCEEEEeCCCchhhhccccc
Q 015463          131 GRPLGLRFDKKTGDLYIADAY-FGLMKVGPEGGLA-TSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKE  207 (406)
Q Consensus       131 ~~p~gi~~d~~~g~L~Vad~~-~gl~~~d~~~~~~-~~l~~~~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~  207 (406)
                      ..|.++.++..++.||++|.. +.|++++++++.. +.+..    ..+..|.++++|. +|+||+++..           
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~----~~l~~p~glavd~~~g~ly~~d~~-----------   99 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV----SGLLSPDGLACDWLGEKLYWTDSE-----------   99 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEE----ECCSCCCEEEEETTTTEEEEEETT-----------
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEc----CCCCCccEEEEEcCCCeEEEEECC-----------
Confidence            457889999767899999986 5699999987632 11111    1245689999995 7899999864           


Q ss_pred             cccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec-ccCCCcceEEEecCCCEEEEEeCC-CCeEEEEEeeCCCCc
Q 015463          208 NIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGS-VGRLHKYWLIGEKAG  285 (406)
Q Consensus       208 ~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~~ngi~l~~d~~~l~v~~t~-~~~i~~~~~~g~~~~  285 (406)
                                           .++|.++++++...+.+. ..+..|+|+++++++..+||++.. ..+|++++++|..  
T Consensus       100 ---------------------~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~--  156 (318)
T 3sov_A          100 ---------------------TNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS--  156 (318)
T ss_dssp             ---------------------TTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS--
T ss_pred             ---------------------CCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC--
Confidence                                 368999999866555554 678889999999988899999965 5899999987632  


Q ss_pred             ceeeee-cCCCCCCceEECC-CCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCC
Q 015463          286 NLEAFA-ILPGYPDNVRTNE-KGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEG  363 (406)
Q Consensus       286 ~~~~~~-~l~g~pd~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g  363 (406)
                       .+.+. ..-..|+++++|+ +++||++.....                                      .|.+++.+|
T Consensus       157 -~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~--------------------------------------~I~~~d~dG  197 (318)
T 3sov_A          157 -RFIIINSEIYWPNGLTLDYEEQKLYWADAKLN--------------------------------------FIHKSNLDG  197 (318)
T ss_dssp             -CEEEECSSCSCEEEEEEETTTTEEEEEETTTT--------------------------------------EEEEEETTS
T ss_pred             -eEEEEECCCCCccEEEEeccCCEEEEEECCCC--------------------------------------EEEEEcCCC
Confidence             22232 2234699999996 677999975432                                      255556665


Q ss_pred             CEEEEEECCCCCeeeceeEEEEeCCEEEEecCCCCeEEEEeC
Q 015463          364 KILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDL  405 (406)
Q Consensus       364 ~~~~~~~~~~g~~~~~~s~~~~~~g~Ly~Gs~~~~~i~~~~~  405 (406)
                      ...+.+....   .....++...++.||+....+..|.+++.
T Consensus       198 ~~~~~~~~~~---~~~P~glav~~~~lywtd~~~~~V~~~~~  236 (318)
T 3sov_A          198 TNRQAVVKGS---LPHPFALTLFEDILYWTDWSTHSILACNK  236 (318)
T ss_dssp             CSCEEEECSC---CSCEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             CceEEEecCC---CCCceEEEEeCCEEEEEecCCCeEEEEEC
Confidence            4433333211   11223344456677777777777777764

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.47  E-value=6.3e-12  Score=129.83  Aligned_cols=198  Identities=13%  Similarity=0.132  Sum_probs=141.0

Q ss_pred             cCcccCcceEEEcCC-CCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC
Q 015463           65 LNQIQGPESMAFDPL-GRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK  141 (406)
Q Consensus        65 ~~~~~gpe~i~~d~~-g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~  141 (406)
                      ..++..+-++++|+. +.++|+....++|++++.+  ....+.....                ......+.|.||++|..
T Consensus       336 ~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~----------------~~~~~~~~p~glAvD~~  399 (628)
T 4a0p_A          336 IHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSV----------------PSQNLEIQPYDLSIDIY  399 (628)
T ss_dssp             CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC------------------------CCCEEEEEEETT
T ss_pred             ehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEccc----------------ccccccCCcceEEeecc
Confidence            345667888999974 5667778888999999876  2223321100                00011457999999986


Q ss_pred             CCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcC-CCCEEEEeCCCchhhhccccccccccccccCCC
Q 015463          142 TGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKENIPLQLCSSLND  219 (406)
Q Consensus       142 ~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~  219 (406)
                      .++||++|.. +.|..++.++...+.+...    .+..|++|++|+ +|.||+++..                       
T Consensus       400 ~~nLY~td~~~~~I~v~~~~G~~~~~l~~~----~l~~Pr~iavdp~~g~ly~tD~g-----------------------  452 (628)
T 4a0p_A          400 SRYIYWTCEATNVINVTRLDGRSVGVVLKG----EQDRPRAVVVNPEKGYMYFTNLQ-----------------------  452 (628)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCEEEEEEEC----TTCCEEEEEEETTTTEEEEEEEE-----------------------
T ss_pred             CCeEEEEcCCCCEEEEEECCCCeEEEEEeC----CCCceeeEEEecCCCeEEEeecC-----------------------
Confidence            6889999987 4577888876654444322    245799999998 8999999853                       


Q ss_pred             CCCCcccCCCCeEEEEeCCCCeEEEec-ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee-cCCCCC
Q 015463          220 PSPIKITKDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPGYP  297 (406)
Q Consensus       220 ~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~-~l~g~p  297 (406)
                             ...++|++.++++...+.+. ..+..|+||+++++++.|||+++..++|.+++++|..   .+++. .....|
T Consensus       453 -------~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~---r~~~~~~~~~~P  522 (628)
T 4a0p_A          453 -------ERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGAN---RIVLEDSNILQP  522 (628)
T ss_dssp             -------TTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEECSSCSCE
T ss_pred             -------CCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc---eEEEEcCCCCCc
Confidence                   11137999999866555554 4688999999999999999999998999999998742   33443 233569


Q ss_pred             CceEECCCCCEEEEEccCC
Q 015463          298 DNVRTNEKGEFWVAIHCRR  316 (406)
Q Consensus       298 d~i~~d~~G~lwv~~~~~~  316 (406)
                      .+++++. |++|++.....
T Consensus       523 ~glav~~-~~ly~tD~~~~  540 (628)
T 4a0p_A          523 VGLTVFE-NWLYWIDKQQQ  540 (628)
T ss_dssp             EEEEEET-TEEEEEETTTT
T ss_pred             EEEEEEC-CEEEEEECCCC
Confidence            9999976 78988886543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.46  E-value=9.8e-11  Score=110.82  Aligned_cols=191  Identities=14%  Similarity=0.157  Sum_probs=127.7

Q ss_pred             cCcceEEEcCCCCeeEEEec-------CCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC
Q 015463           69 QGPESMAFDPLGRGPYTGVA-------DGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK  141 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~-------~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~  141 (406)
                      .+|.+++++++|+.+|++..       ++.|+.++....+.....                     .....|.+++++++
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~---------------------~~~~~~~~~~~s~d   99 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAI---------------------HNDLKPFGATINNT   99 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEE---------------------EESSCCCSEEEETT
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEE---------------------ecCCCcceEEECCC
Confidence            47889999999988888874       467999987622111111                     01245788999993


Q ss_pred             CCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCc-----ccccccceEEcCCCC-EEEEeCCCchhhhcccccccccccc
Q 015463          142 TGDLYIADAY-FGLMKVGPEGGLATSLATEAEGV-----PLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLC  214 (406)
Q Consensus       142 ~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~-----~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~  214 (406)
                      ++.+|+++.. +.|..+|.++++.........+.     ....+.+++++++|+ +|+++..                  
T Consensus       100 g~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~------------------  161 (353)
T 3vgz_A          100 TQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG------------------  161 (353)
T ss_dssp             TTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES------------------
T ss_pred             CCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC------------------
Confidence            3449999875 57999999888753322211111     112367899999986 7777621                  


Q ss_pred             ccCCCCCCCcccCCCCeEEEEeCCCCeEEEecc-cCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeec-
Q 015463          215 SSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLR-NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI-  292 (406)
Q Consensus       215 ~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~-~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~-  292 (406)
                                   ..+.|+.+|.++++...... ....++++++++|++.+|++.. .+.|+.+++...+.  ...+.. 
T Consensus       162 -------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-~~~i~~~d~~~~~~--~~~~~~~  225 (353)
T 3vgz_A          162 -------------KESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNA-DGELITIDTADNKI--LSRKKLL  225 (353)
T ss_dssp             -------------SSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECT-TSEEEEEETTTTEE--EEEEECC
T ss_pred             -------------CCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcC-CCeEEEEECCCCeE--EEEEEcC
Confidence                         13679999999888766554 3445889999999999988865 67899988653211  111111 


Q ss_pred             ---CCCCCCceEECCCCC-EEEEEcc
Q 015463          293 ---LPGYPDNVRTNEKGE-FWVAIHC  314 (406)
Q Consensus       293 ---l~g~pd~i~~d~~G~-lwv~~~~  314 (406)
                         ....+.+++++++|+ +|++...
T Consensus       226 ~~~~~~~~~~~~~s~dg~~l~~~~~~  251 (353)
T 3vgz_A          226 DDGKEHFFINISLDTARQRAFITDSK  251 (353)
T ss_dssp             CSSSCCCEEEEEEETTTTEEEEEESS
T ss_pred             CCCCCcccceEEECCCCCEEEEEeCC
Confidence               123455688999998 7777654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.46  E-value=1.5e-11  Score=116.79  Aligned_cols=185  Identities=16%  Similarity=0.091  Sum_probs=125.5

Q ss_pred             cCcceEEEcCCCCeeEEEec-CCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEE
Q 015463           69 QGPESMAFDPLGRGPYTGVA-DGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~V  147 (406)
                      ..|++++++ ++. +|+... ++.|..+|....+.+....                     ....|.+|++++ +|.|||
T Consensus        44 ~~~~~i~~~-~~~-lyv~~~~~~~v~viD~~t~~~~~~i~---------------------~~~~p~~i~~~~-~g~lyv   99 (328)
T 3dsm_A           44 DVAQSMVIR-DGI-GWIVVNNSHVIFAIDINTFKEVGRIT---------------------GFTSPRYIHFLS-DEKAYV   99 (328)
T ss_dssp             SCEEEEEEE-TTE-EEEEEGGGTEEEEEETTTCCEEEEEE---------------------CCSSEEEEEEEE-TTEEEE
T ss_pred             ccceEEEEE-CCE-EEEEEcCCCEEEEEECcccEEEEEcC---------------------CCCCCcEEEEeC-CCeEEE
Confidence            457899885 344 777655 6889999987222221111                     135589999987 689999


Q ss_pred             Ee-CCCcEEEEeCCCCeEEEccc-ccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcc
Q 015463          148 AD-AYFGLMKVGPEGGLATSLAT-EAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKI  225 (406)
Q Consensus       148 ad-~~~gl~~~d~~~~~~~~l~~-~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  225 (406)
                      ++ ..+.|.++|++++++..... .........|.++++ .++.+|+++.+                             
T Consensus       100 ~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~-----------------------------  149 (328)
T 3dsm_A          100 TQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWS-----------------------------  149 (328)
T ss_dssp             EEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECT-----------------------------
T ss_pred             EECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCC-----------------------------
Confidence            99 55789999999887653221 111122346888998 57899999742                             


Q ss_pred             cCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCC----------CeEEEEEeeCCCCcceeeeecCC-
Q 015463          226 TKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV----------GRLHKYWLIGEKAGNLEAFAILP-  294 (406)
Q Consensus       226 ~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~----------~~i~~~~~~g~~~~~~~~~~~l~-  294 (406)
                        ..+.|.++|++++++.........|+++++++|++ +|++....          ++|++++.+.   ++.......+ 
T Consensus       150 --~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t---~~v~~~~~~~~  223 (328)
T 3dsm_A          150 --YQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAET---FTVEKQFKFKL  223 (328)
T ss_dssp             --TCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTT---TEEEEEEECCT
T ss_pred             --CCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCC---CeEEEEEecCC
Confidence              12679999999988765554456789999999987 66766543          6899998653   2222112232 


Q ss_pred             -CCCCceEECCCCC-EEEEEc
Q 015463          295 -GYPDNVRTNEKGE-FWVAIH  313 (406)
Q Consensus       295 -g~pd~i~~d~~G~-lwv~~~  313 (406)
                       ..|.+++++++|+ +|++..
T Consensus       224 g~~p~~la~~~d~~~lyv~~~  244 (328)
T 3dsm_A          224 GDWPSEVQLNGTRDTLYWINN  244 (328)
T ss_dssp             TCCCEEEEECTTSCEEEEESS
T ss_pred             CCCceeEEEecCCCEEEEEcc
Confidence             3689999998766 777653

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.42  E-value=1.7e-11  Score=114.44  Aligned_cols=183  Identities=14%  Similarity=0.189  Sum_probs=125.7

Q ss_pred             cCcceEEEcCC-CCeeEEEecCCEEEEEeCC-ceeEE-EeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcE
Q 015463           69 QGPESMAFDPL-GRGPYTGVADGRILFWDGL-KWTDF-AFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL  145 (406)
Q Consensus        69 ~gpe~i~~d~~-g~~ly~g~~~g~I~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L  145 (406)
                      ..|.+++++++ |+ +|+++..++|++++.+ ++..+ ....                  .......|.++++++ +|++
T Consensus        71 ~~~~~i~~~~~~g~-l~v~~~~~~l~~~d~~g~~~~~~~~~~------------------~~~~~~~~~~i~~d~-~g~l  130 (314)
T 1pjx_A           71 GIPAGCQCDRDANQ-LFVADMRLGLLVVQTDGTFEEIAKKDS------------------EGRRMQGCNDCAFDY-EGNL  130 (314)
T ss_dssp             CCEEEEEECSSSSE-EEEEETTTEEEEEETTSCEEECCSBCT------------------TSCBCBCCCEEEECT-TSCE
T ss_pred             CCCceEEEecCCCc-EEEEECCCCEEEEeCCCCEEEEEeccC------------------CCccccCCcCEEECC-CCCE
Confidence            56899999999 77 8888877789999976 33322 1100                  001134588999999 8999


Q ss_pred             EEEeCC----------------CcEEEEeCCCCeEEEcccccCCcccccccceEEc----CCC-CEEEEeCCCchhhhcc
Q 015463          146 YIADAY----------------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDID----DEG-NVYFTDSSTNYQRRQM  204 (406)
Q Consensus       146 ~Vad~~----------------~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d----~dG-~ly~t~~~~~~~~~~~  204 (406)
                      |+++..                .+|++++++ ++++.+...     ...+++++++    ++| .+|+++..        
T Consensus       131 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~-----~~~~~~i~~~~~~d~dg~~l~v~~~~--------  196 (314)
T 1pjx_A          131 WITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA-----FQFPNGIAVRHMNDGRPYQLIVAETP--------  196 (314)
T ss_dssp             EEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE-----ESSEEEEEEEECTTSCEEEEEEEETT--------
T ss_pred             EEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC-----CCCcceEEEecccCCCCCEEEEEECC--------
Confidence            999874                379999987 555543221     3357888998    999 68999753        


Q ss_pred             ccccccccccccCCCCCCCcccCCCCeEEEEeCC-CCeEE---Eec--cc-C-CCcceEEEecCCCEEEEEeCCCCeEEE
Q 015463          205 QKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPT-TKQTT---VLL--RN-L-QFPNGLSLSKDKSFFVFCEGSVGRLHK  276 (406)
Q Consensus       205 ~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~-t~~~~---~~~--~~-~-~~~ngi~l~~d~~~l~v~~t~~~~i~~  276 (406)
                                              .++|++||.+ +++..   .+.  .. . ..+.++++++|++ +|++....++|.+
T Consensus       197 ------------------------~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~~~~~i~~  251 (314)
T 1pjx_A          197 ------------------------TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEV  251 (314)
T ss_dssp             ------------------------TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEE
T ss_pred             ------------------------CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC-EEEEEcCCCEEEE
Confidence                                    3679999865 45432   111  11 1 4578999999885 7788766789999


Q ss_pred             EEee-CCCCcceeeeecCC-CCCCceEECCCCC-EEEEEcc
Q 015463          277 YWLI-GEKAGNLEAFAILP-GYPDNVRTNEKGE-FWVAIHC  314 (406)
Q Consensus       277 ~~~~-g~~~~~~~~~~~l~-g~pd~i~~d~~G~-lwv~~~~  314 (406)
                      ++.+ +..   ...+ ..+ ..|.+++++++|+ +|++...
T Consensus       252 ~d~~~g~~---~~~~-~~~~~~~~~i~~~~dg~~l~v~~~~  288 (314)
T 1pjx_A          252 FGPDGGQP---KMRI-RCPFEKPSNLHFKPQTKTIFVTEHE  288 (314)
T ss_dssp             ECTTCBSC---SEEE-ECSSSCEEEEEECTTSSEEEEEETT
T ss_pred             EcCCCCcE---eEEE-eCCCCCceeEEECCCCCEEEEEeCC
Confidence            9865 321   1122 222 4578899999999 9999865

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.42  E-value=1.4e-10  Score=110.20  Aligned_cols=194  Identities=15%  Similarity=0.144  Sum_probs=123.7

Q ss_pred             cccCcceEEEcCCCCeeEEEec---CCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC
Q 015463           67 QIQGPESMAFDPLGRGPYTGVA---DGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK  141 (406)
Q Consensus        67 ~~~gpe~i~~d~~g~~ly~g~~---~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~  141 (406)
                      ....|..++++++|+ +|+...   ++.|+.|+.+  ..+.+....                    .....|.++++++ 
T Consensus        38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~--------------------~~~~~p~~~a~sp-   95 (347)
T 3hfq_A           38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVV--------------------APGTPPAYVAVDE-   95 (347)
T ss_dssp             ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEE--------------------EESCCCSEEEEET-
T ss_pred             ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeee--------------------cCCCCCEEEEECC-
Confidence            346899999999999 887765   4788888754  333332110                    1135688999999 


Q ss_pred             CCc-EEEEeCC-CcEEEEeCC-CCeEEEcccc-cCCc------ccccccceEEcCCCCEEEEeCCCchhhhccccccccc
Q 015463          142 TGD-LYIADAY-FGLMKVGPE-GGLATSLATE-AEGV------PLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPL  211 (406)
Q Consensus       142 ~g~-L~Vad~~-~gl~~~d~~-~~~~~~l~~~-~~~~------~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~  211 (406)
                      +|+ ||+++.. +.+..++.+ ++..+.+... ..+.      ....+..+++++||++|+++..               
T Consensus        96 dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~---------------  160 (347)
T 3hfq_A           96 ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG---------------  160 (347)
T ss_dssp             TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT---------------
T ss_pred             CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC---------------
Confidence            565 8888854 457677753 3444433221 1111      1234678999999998888753               


Q ss_pred             cccccCCCCCCCcccCCCCeEEEEeCC-CCeEEEec----ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcc
Q 015463          212 QLCSSLNDPSPIKITKDTGRVLKYDPT-TKQTTVLL----RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGN  286 (406)
Q Consensus       212 ~~~~e~~~~~~~~~~~~~g~l~~~d~~-t~~~~~~~----~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~  286 (406)
                                       .+.+..|+.+ ++++....    .....+++++++||++.+|++....+.+..|+++.. .+.
T Consensus       161 -----------------~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-~g~  222 (347)
T 3hfq_A          161 -----------------SDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ-TGA  222 (347)
T ss_dssp             -----------------TTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETT-TTE
T ss_pred             -----------------CCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCC-CCc
Confidence                             2567777766 55554321    222357789999999999998888888888887731 222


Q ss_pred             eeee---ecCC------CCCCceEECCCCC-EEEEEccC
Q 015463          287 LEAF---AILP------GYPDNVRTNEKGE-FWVAIHCR  315 (406)
Q Consensus       287 ~~~~---~~l~------g~pd~i~~d~~G~-lwv~~~~~  315 (406)
                      .+..   ...+      ..|..++++++|+ +|++....
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~  261 (347)
T 3hfq_A          223 FTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGY  261 (347)
T ss_dssp             EEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETT
T ss_pred             eEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCC
Confidence            2222   1122      1255689999998 77776543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.41  E-value=1.9e-11  Score=114.75  Aligned_cols=187  Identities=12%  Similarity=0.118  Sum_probs=127.0

Q ss_pred             cCcceEEEcCCCCeeEEEecC-CEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEE
Q 015463           69 QGPESMAFDPLGRGPYTGVAD-GRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~~-g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~  146 (406)
                      ..|.++++|++|+ +|++.+. ++|.+++.+ .++.+......                  ...+.|.++++++ +|++|
T Consensus        86 ~~~~gl~~d~dG~-l~v~~~~~~~v~~~~~~g~~~~~~~~~~~------------------~~~~~~~~i~~d~-dG~l~  145 (305)
T 3dr2_A           86 AFTNGNAVDAQQR-LVHCEHGRRAITRSDADGQAHLLVGRYAG------------------KRLNSPNDLIVAR-DGAIW  145 (305)
T ss_dssp             SCEEEEEECTTSC-EEEEETTTTEEEEECTTSCEEEEECEETT------------------EECSCCCCEEECT-TSCEE
T ss_pred             CccceeeECCCCC-EEEEECCCCEEEEECCCCCEEEEEeccCC------------------CccCCCCCEEECC-CCCEE
Confidence            4689999999999 7877654 789999877 55444322110                  1135688999999 89999


Q ss_pred             EEeC------------------CCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccc
Q 015463          147 IADA------------------YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKE  207 (406)
Q Consensus       147 Vad~------------------~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~  207 (406)
                      ++|.                  ..+|+++|+++++++.+.      .+..++++++++||+ ||++++...         
T Consensus       146 ~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~------~~~~p~gl~~spdg~~lyv~~~~~~---------  210 (305)
T 3dr2_A          146 FTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA------DLDHPNGLAFSPDEQTLYVSQTPEQ---------  210 (305)
T ss_dssp             EECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE------EESSEEEEEECTTSSEEEEEECCC----------
T ss_pred             EeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe------cCCCCcceEEcCCCCEEEEEecCCc---------
Confidence            9752                  247999999888766543      245689999999996 999985310         


Q ss_pred             cccccccccCCCCCCCcccCCCCeEEEEeCCCCeE---EEec-ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCC
Q 015463          208 NIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQT---TVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEK  283 (406)
Q Consensus       208 ~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~---~~~~-~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~  283 (406)
                                        ....++|++|+.+++.+   +.+. .....|.|++++++++ +|++.  .++|++|+.+|..
T Consensus       211 ------------------~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~--~~gv~~~~~~g~~  269 (305)
T 3dr2_A          211 ------------------GHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSS--GTGVCVFDSDGQL  269 (305)
T ss_dssp             --------------------CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECC--SSEEEEECTTSCE
T ss_pred             ------------------CCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEec--CCcEEEECCCCCE
Confidence                              01125688888765432   1222 1234578999999997 77765  4679999875431


Q ss_pred             CcceeeeecCCCCCCceEECCCCC-EEEEEccC
Q 015463          284 AGNLEAFAILPGYPDNVRTNEKGE-FWVAIHCR  315 (406)
Q Consensus       284 ~~~~~~~~~l~g~pd~i~~d~~G~-lwv~~~~~  315 (406)
                      .   ..+ ..+..|.+++++++|+ ||+++..+
T Consensus       270 ~---~~~-~~~~~~~~~~f~~d~~~L~it~~~~  298 (305)
T 3dr2_A          270 L---GHI-PTPGTASNCTFDQAQQRLFITGGPC  298 (305)
T ss_dssp             E---EEE-ECSSCCCEEEECTTSCEEEEEETTE
T ss_pred             E---EEE-ECCCceeEEEEeCCCCEEEEEcCCe
Confidence            1   112 2344588899987764 99998643

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.39  E-value=1e-10  Score=110.71  Aligned_cols=189  Identities=14%  Similarity=0.145  Sum_probs=132.7

Q ss_pred             cceEEEcCCCCeeEEEe--cCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463           71 PESMAFDPLGRGPYTGV--ADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (406)
Q Consensus        71 pe~i~~d~~g~~ly~g~--~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va  148 (406)
                      |.+++++++|+.+|++.  .++.|+.++....+......                    .....|.++++++++..||++
T Consensus       143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~--------------------~~~~~~~~~~~s~dg~~l~~~  202 (353)
T 3vgz_A          143 PRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ--------------------NTGKMSTGLALDSEGKRLYTT  202 (353)
T ss_dssp             EEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC--------------------CCCTTCCCCEEETTTTEEEEE
T ss_pred             CceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec--------------------CCCCccceEEECCCCCEEEEE
Confidence            78899999999888876  36889999987222221111                    012347789999844568998


Q ss_pred             eCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463          149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK  227 (406)
Q Consensus       149 d~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  227 (406)
                      +..+.|+.+|..+++...........+...+.+++++++|+ +|+++..                               
T Consensus       203 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-------------------------------  251 (353)
T 3vgz_A          203 NADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK-------------------------------  251 (353)
T ss_dssp             CTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS-------------------------------
T ss_pred             cCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC-------------------------------
Confidence            87778999999988754332221112334677899999986 7777642                               


Q ss_pred             CCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCCCC
Q 015463          228 DTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE  307 (406)
Q Consensus       228 ~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~  307 (406)
                       .+.|+.||.++++...... ...+.++++++|++.+|++....+.|..++...   ++........+.|.+++++++|+
T Consensus       252 -~~~v~~~d~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~---~~~~~~~~~~~~~~~~~~s~dg~  326 (353)
T 3vgz_A          252 -AAEVLVVDTRNGNILAKVA-APESLAVLFNPARNEAYVTHRQAGKVSVIDAKS---YKVVKTFDTPTHPNSLALSADGK  326 (353)
T ss_dssp             -SSEEEEEETTTCCEEEEEE-CSSCCCEEEETTTTEEEEEETTTTEEEEEETTT---TEEEEEEECCSEEEEEEECTTSC
T ss_pred             -CCEEEEEECCCCcEEEEEE-cCCCceEEECCCCCEEEEEECCCCeEEEEECCC---CeEEEEEecCCCCCeEEEcCCCC
Confidence             3679999998887654333 234678999999999999988788999998653   22211223445688899999998


Q ss_pred             -EEEEEccC
Q 015463          308 -FWVAIHCR  315 (406)
Q Consensus       308 -lwv~~~~~  315 (406)
                       +|++...+
T Consensus       327 ~l~v~~~~~  335 (353)
T 3vgz_A          327 TLYVSVKQK  335 (353)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEccc
Confidence             89988654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.39  E-value=1.9e-11  Score=115.50  Aligned_cols=183  Identities=14%  Similarity=0.207  Sum_probs=125.4

Q ss_pred             cCcceEEEcCCCCeeEEEecC-----CEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC
Q 015463           69 QGPESMAFDPLGRGPYTGVAD-----GRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK  141 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~~-----g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~  141 (406)
                      ..|.+++++++|+ +|+++..     ++|++++.+  ..+.+....                    .....|.++++++ 
T Consensus        87 ~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--------------------~~~~~~~~i~~d~-  144 (333)
T 2dg1_A           87 ANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNLQDIIEDL--------------------STAYCIDDMVFDS-  144 (333)
T ss_dssp             SSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSCEEEECSS--------------------SSCCCEEEEEECT-
T ss_pred             CCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEEEEEEccC--------------------ccCCcccceEECC-
Confidence            5689999999998 7776654     489999876  333221100                    0134688999999 


Q ss_pred             CCcEEEEeCC-------CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccc
Q 015463          142 TGDLYIADAY-------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQL  213 (406)
Q Consensus       142 ~g~L~Vad~~-------~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~  213 (406)
                      +|++|+++..       .+|+++++++++++.+...     ...+++++++++|+ +|+++..                 
T Consensus       145 ~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~i~~~~dg~~l~v~~~~-----------------  202 (333)
T 2dg1_A          145 KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN-----ISVANGIALSTDEKVLWVTETT-----------------  202 (333)
T ss_dssp             TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE-----ESSEEEEEECTTSSEEEEEEGG-----------------
T ss_pred             CCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC-----CCcccceEECCCCCEEEEEeCC-----------------
Confidence            8999999874       4799999988776654321     33578999999996 9998742                 


Q ss_pred             cccCCCCCCCcccCCCCeEEEEeCCC-C-eEEEe-------cccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCC
Q 015463          214 CSSLNDPSPIKITKDTGRVLKYDPTT-K-QTTVL-------LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKA  284 (406)
Q Consensus       214 ~~e~~~~~~~~~~~~~g~l~~~d~~t-~-~~~~~-------~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~  284 (406)
                                     .++|++||.++ + ....+       ..+...+.++++++|++ +|++....++|.+++.++.  
T Consensus       203 ---------------~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~~g~--  264 (333)
T 2dg1_A          203 ---------------ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQGRVLVFNKRGY--  264 (333)
T ss_dssp             ---------------GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEETTTEEEEECTTSC--
T ss_pred             ---------------CCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCC-EEEEEcCCCEEEEECCCCC--
Confidence                           25788888753 2 23211       11224678999999986 7787766689999986432  


Q ss_pred             cceeeeecCC----C---CCCceEECCCC-CEEEEEccC
Q 015463          285 GNLEAFAILP----G---YPDNVRTNEKG-EFWVAIHCR  315 (406)
Q Consensus       285 ~~~~~~~~l~----g---~pd~i~~d~~G-~lwv~~~~~  315 (406)
                       ....+. .+    |   .|.+++++++| .||+++..+
T Consensus       265 -~~~~~~-~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          265 -PIGQIL-IPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             -EEEEEE-CTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             -EEEEEE-cCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence             122222 22    2   58899998886 699998764

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.38  E-value=3.5e-11  Score=118.92  Aligned_cols=153  Identities=11%  Similarity=0.113  Sum_probs=108.8

Q ss_pred             CCcceEEEEeCC--CCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccc
Q 015463          130 CGRPLGLRFDKK--TGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKE  207 (406)
Q Consensus       130 ~~~p~gi~~d~~--~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~  207 (406)
                      ..+|.+|++|++  +|+|||+|..+.|.+++++++.++.+..     .+..|++++++++|+||+++....         
T Consensus       138 ~~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-----~~~~P~giavd~dG~lyVad~~~~---------  203 (433)
T 4hw6_A          138 FDNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-----NIGQCADVNFTLNGDMVVVDDQSS---------  203 (433)
T ss_dssp             CSCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-----CCSCEEEEEECTTCCEEEEECCSC---------
T ss_pred             cCCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-----CCCCccEEEECCCCCEEEEcCCCC---------
Confidence            467999999972  5999999987789999998888776543     356799999999999999996410         


Q ss_pred             cccccccccCCCCCCCcccCCCCeEEEEeCCCCeE-EEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcc
Q 015463          208 NIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQT-TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGN  286 (406)
Q Consensus       208 ~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~-~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~  286 (406)
                                         ....+++.+++..+.. ......+..|+++++++++..+||++...++|++++.++... .
T Consensus       204 -------------------~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~-~  263 (433)
T 4hw6_A          204 -------------------DTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTL-T  263 (433)
T ss_dssp             -------------------TTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCE-E
T ss_pred             -------------------cccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeE-E
Confidence                               0012366676654322 112235778999999996667999999889999998752111 0


Q ss_pred             eeeeec-CCCCCCceEECCCCC-EEEEEccCC
Q 015463          287 LEAFAI-LPGYPDNVRTNEKGE-FWVAIHCRR  316 (406)
Q Consensus       287 ~~~~~~-l~g~pd~i~~d~~G~-lwv~~~~~~  316 (406)
                      ..++.. ..+.+.++++|++|+ ||++....+
T Consensus       264 ~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~  295 (433)
T 4hw6_A          264 EEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH  295 (433)
T ss_dssp             EEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred             EEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence            122221 223455799999998 999986543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.37  E-value=2.7e-11  Score=113.24  Aligned_cols=184  Identities=16%  Similarity=0.161  Sum_probs=125.8

Q ss_pred             cCcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEE
Q 015463           69 QGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~  146 (406)
                      ..|.+++++++|+ +|+++ +++|++++.+  .++.+......                  ....+|.++++|+ +|++|
T Consensus        54 ~~~~~i~~~~dG~-l~v~~-~~~l~~~d~~~g~~~~~~~~~~~------------------~~~~~~~di~~d~-dG~l~  112 (297)
T 3g4e_A           54 APVSSVALRQSGG-YVATI-GTKFCALNWKEQSAVVLATVDND------------------KKNNRFNDGKVDP-AGRYF  112 (297)
T ss_dssp             SCEEEEEEBTTSS-EEEEE-TTEEEEEETTTTEEEEEEECCTT------------------CSSEEEEEEEECT-TSCEE
T ss_pred             CceEEEEECCCCC-EEEEE-CCeEEEEECCCCcEEEEEecCCC------------------CCCCCCCCEEECC-CCCEE
Confidence            4688999999999 88887 5689999976  44444332110                  1135688999999 89999


Q ss_pred             EEeCC------------CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccc
Q 015463          147 IADAY------------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQL  213 (406)
Q Consensus       147 Vad~~------------~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~  213 (406)
                      +++..            .+|+++++++ +...+..     .+..+|++++++||+ +|++++.                 
T Consensus       113 ~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~-----~~~~pngi~~spdg~~lyv~~~~-----------------  169 (297)
T 3g4e_A          113 AGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFD-----QVDISNGLDWSLDHKIFYYIDSL-----------------  169 (297)
T ss_dssp             EEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEE-----EESBEEEEEECTTSCEEEEEEGG-----------------
T ss_pred             EecCCcccccccccCCCcEEEEEECCC-CEEEEee-----ccccccceEEcCCCCEEEEecCC-----------------
Confidence            99842            3699999874 3443322     235689999999995 8998853                 


Q ss_pred             cccCCCCCCCcccCCCCeEEEEeC--CCCeEE---Eec---ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCc
Q 015463          214 CSSLNDPSPIKITKDTGRVLKYDP--TTKQTT---VLL---RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAG  285 (406)
Q Consensus       214 ~~e~~~~~~~~~~~~~g~l~~~d~--~t~~~~---~~~---~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~  285 (406)
                                     .++|++|+.  +++...   .+.   .....|.|++++++++ +|++....++|.+|+.+.   +
T Consensus       170 ---------------~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d~~t---G  230 (297)
T 3g4e_A          170 ---------------SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRLDPVT---G  230 (297)
T ss_dssp             ---------------GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEECTTT---C
T ss_pred             ---------------CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEEcCCC---c
Confidence                           256887764  566542   222   2234688999999984 888887778999998652   2


Q ss_pred             ceeeeecCC-CCCCceEEC-CCC-CEEEEEccC
Q 015463          286 NLEAFAILP-GYPDNVRTN-EKG-EFWVAIHCR  315 (406)
Q Consensus       286 ~~~~~~~l~-g~pd~i~~d-~~G-~lwv~~~~~  315 (406)
                      +......++ ..|.++++. +++ .|||++...
T Consensus       231 ~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~  263 (297)
T 3g4e_A          231 KRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARD  263 (297)
T ss_dssp             CEEEEEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred             eEEEEEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence            222222343 357788886 565 499998754

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.37  E-value=7.7e-11  Score=113.30  Aligned_cols=172  Identities=12%  Similarity=0.176  Sum_probs=112.2

Q ss_pred             CcccCcceEEEcCCCCeeEEEecCCEEEEEeCC-cee-EEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC--
Q 015463           66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDGL-KWT-DFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK--  141 (406)
Q Consensus        66 ~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~--  141 (406)
                      .++..|.+|+++++|+.+|+....|+|++++.+ ... .+....    .            ......+.++||+++++  
T Consensus        15 ~~l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~----~------------v~~~g~~g~~gia~~pdf~   78 (353)
T 2g8s_A           15 DKLDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVP----D------------VWAHGQGGLLDVVLAPDFA   78 (353)
T ss_dssp             EEESSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCC----C------------CCCSTTCSEEEEEECTTHH
T ss_pred             CCCCCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCc----c------------cccCCCCCceeEEECCCCC
Confidence            368899999999999845666678999999866 221 121110    0            01112356899999984  


Q ss_pred             -CCcEEEEeCC--------CcEEEEeCCCC--e---EEEcccccCC--cccccccceEEcCCCCEEEEeCCCchhhhccc
Q 015463          142 -TGDLYIADAY--------FGLMKVGPEGG--L---ATSLATEAEG--VPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQ  205 (406)
Q Consensus       142 -~g~L~Vad~~--------~gl~~~d~~~~--~---~~~l~~~~~~--~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~  205 (406)
                       ++.|||++..        ..|.+++.+.+  .   .+.+......  .....+++|++++||.||++.......  .. 
T Consensus        79 ~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~--~~-  155 (353)
T 2g8s_A           79 QSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQR--PT-  155 (353)
T ss_dssp             HHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCG--GG-
T ss_pred             CCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCC--Cc-
Confidence             6899999753        35888876533  2   2223222221  234568899999999999997432110  00 


Q ss_pred             cccccccccccCCCCCCCcccCCCCeEEEEeCCCC-------------eEEEecccCCCcceEEEecCCCEEEEEeCCCC
Q 015463          206 KENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTK-------------QTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVG  272 (406)
Q Consensus       206 ~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~-------------~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~  272 (406)
                           .++.           ....|+|+|+++++.             ..+.+..++..|.|++++++...||+++....
T Consensus       156 -----~q~~-----------~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~  219 (353)
T 2g8s_A          156 -----AQDL-----------DKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPR  219 (353)
T ss_dssp             -----GGCT-----------TSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSB
T ss_pred             -----cCCC-----------CCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCC
Confidence                 0110           233588999999854             34567788899999999996667999987643

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.37  E-value=1e-10  Score=109.95  Aligned_cols=216  Identities=13%  Similarity=0.078  Sum_probs=132.3

Q ss_pred             ceEEEcCCCCeeEEEecCCEEEEEeCC-c-eeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEe
Q 015463           72 ESMAFDPLGRGPYTGVADGRILFWDGL-K-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (406)
Q Consensus        72 e~i~~d~~g~~ly~g~~~g~I~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad  149 (406)
                      .+++++++|+ +|+++.+  |++++.. . ...+...                       ........+.  +++||+++
T Consensus        63 ~~~~~~~~g~-l~v~t~~--l~~~d~~g~~~~~~~~~-----------------------~~~~~~~~~~--~~~l~v~t  114 (330)
T 3hxj_A           63 CRPSIGKDGT-IYFGSDK--VYAINPDGTEKWRFDTK-----------------------KAIVSDFTIF--EDILYVTS  114 (330)
T ss_dssp             ECCEETTTTE-ECCSSCE--EEEECCCGGGGGGSCC----------------------------CCEEEE--TTEEEEEC
T ss_pred             cceEEecCCc-EEEecCc--EEEECCCCcEEEEEECC-----------------------CCcccCceEE--CCEEEEEe
Confidence            4667777777 8888765  8888754 1 1011000                       0001122333  68999998


Q ss_pred             CCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCC
Q 015463          150 AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDT  229 (406)
Q Consensus       150 ~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~  229 (406)
                      ..++|+++|++ ++....... .   ......++++++|++|+++..                                 
T Consensus       115 ~~~~l~~~d~~-g~~~~~~~~-~---~~~~~~~~~~~~g~l~vgt~~---------------------------------  156 (330)
T 3hxj_A          115 MDGHLYAINTD-GTEKWRFKT-K---KAIYATPIVSEDGTIYVGSND---------------------------------  156 (330)
T ss_dssp             TTSEEEEECTT-SCEEEEEEC-S---SCCCSCCEECTTSCEEEECTT---------------------------------
T ss_pred             cCCEEEEEcCC-CCEEEEEcC-C---CceeeeeEEcCCCEEEEEcCC---------------------------------
Confidence            87899999998 443221111 1   123566788989999998743                                 


Q ss_pred             CeEEEEeCCCCeEE-EecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCCCCE
Q 015463          230 GRVLKYDPTTKQTT-VLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEF  308 (406)
Q Consensus       230 g~l~~~d~~t~~~~-~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~l  308 (406)
                      ++|++||++ ++.. .+.........+++++++. +|++.   +.|++++..|.   ..-.+.........++.|++|++
T Consensus       157 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~v~t---~~l~~~d~~g~---~~~~~~~~~~~~~~~~~~~~g~l  228 (330)
T 3hxj_A          157 NYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT-IYFGS---DKVYAINPDGT---EKWNFYAGYWTVTRPAISEDGTI  228 (330)
T ss_dssp             SEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC-EEEES---SSEEEECTTSC---EEEEECCSSCCCSCCEECTTSCE
T ss_pred             CEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE-EEEEe---CEEEEECCCCc---EEEEEccCCcceeceEECCCCeE
Confidence            679999998 5443 3322222344566666665 66654   78998883321   11111111233567888999999


Q ss_pred             EEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCCEEEEEECCCCCeeeceeEEE-EeC
Q 015463          309 WVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVE-EKD  387 (406)
Q Consensus       309 wv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~~~s~~~-~~~  387 (406)
                      |+++..+                                       .+++++++|+.+..+....+.    .+.+. ..+
T Consensus       229 ~v~t~~~---------------------------------------gl~~~~~~g~~~~~~~~~~~~----~~~~~~~~~  265 (330)
T 3hxj_A          229 YVTSLDG---------------------------------------HLYAINPDGTEKWRFKTGKRI----ESSPVIGNT  265 (330)
T ss_dssp             EEEETTT---------------------------------------EEEEECTTSCEEEEEECSSCC----CSCCEECTT
T ss_pred             EEEcCCC---------------------------------------eEEEECCCCCEeEEeeCCCCc----cccceEcCC
Confidence            9998643                                       277889999998887654332    22233 347


Q ss_pred             CEEEEecCCCCeEEEEeC
Q 015463          388 GKLWMGSVLMPFVAVYDL  405 (406)
Q Consensus       388 g~Ly~Gs~~~~~i~~~~~  405 (406)
                      |+||+|+. ..+|.+++.
T Consensus       266 g~l~v~t~-~ggl~~~d~  282 (330)
T 3hxj_A          266 DTIYFGSY-DGHLYAINP  282 (330)
T ss_dssp             SCEEEECT-TCEEEEECT
T ss_pred             CeEEEecC-CCCEEEECC
Confidence            89999996 457888873

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.36  E-value=2e-11  Score=127.76  Aligned_cols=198  Identities=12%  Similarity=0.154  Sum_probs=133.6

Q ss_pred             CCcceEEEEeCCCCcEEEEeCC-CcEEEEeCCC----CeEEEcccccCCcccccccceEEc-CCCCEEEEeCCCchhhhc
Q 015463          130 CGRPLGLRFDKKTGDLYIADAY-FGLMKVGPEG----GLATSLATEAEGVPLRFTNDLDID-DEGNVYFTDSSTNYQRRQ  203 (406)
Q Consensus       130 ~~~p~gi~~d~~~g~L~Vad~~-~gl~~~d~~~----~~~~~l~~~~~~~~~~~~~~l~~d-~dG~ly~t~~~~~~~~~~  203 (406)
                      ..+|.+|++++.++.||++|.. +.|+++++++    .....+.    ...+..|.+|++| ..|+||+++..       
T Consensus       405 ~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i----~~~~~~P~glavD~~~g~LY~tD~~-------  473 (699)
T 1n7d_A          405 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI----SRDIQAPDGLAVDWIHSNIYWTDSV-------  473 (699)
T ss_dssp             CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC----CSCC--CCCEECCCSSSBCEECCTT-------
T ss_pred             CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEE----eCCCCCcceEEEEeeCCcEEEEecc-------
Confidence            4678999999867899999876 5799999876    2211111    1224568899999 47799999854       


Q ss_pred             cccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec-ccCCCcceEEEecCCCEEEEEeCCC-CeEEEEEeeC
Q 015463          204 MQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSV-GRLHKYWLIG  281 (406)
Q Consensus       204 ~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~~ngi~l~~d~~~l~v~~t~~-~~i~~~~~~g  281 (406)
                                               .++|.+++++++..+++. .++..|++|++++++..|||++... ++|++++++|
T Consensus       474 -------------------------~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG  528 (699)
T 1n7d_A          474 -------------------------LGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  528 (699)
T ss_dssp             -------------------------TSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS
T ss_pred             -------------------------CCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC
Confidence                                     367999999877666654 4578899999999888999998765 7899998876


Q ss_pred             CCCcceeeee-cCCCCCCceEECCC-CCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEE
Q 015463          282 EKAGNLEAFA-ILPGYPDNVRTNEK-GEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKY  359 (406)
Q Consensus       282 ~~~~~~~~~~-~l~g~pd~i~~d~~-G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~  359 (406)
                      ..   .+++. .....|++|++|++ ++||++.....                                      .|.++
T Consensus       529 ~~---~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~--------------------------------------~I~~~  567 (699)
T 1n7d_A          529 VD---IYSLVTENIQWPNGITLDLLSGRLYWVDSKLH--------------------------------------SISSI  567 (699)
T ss_dssp             CC---CCEESCSSCSSCCCEEECTTTCCEEEEETTTT--------------------------------------EEEEE
T ss_pred             CC---eeEEEeCCCCCccEEEEeccCCEEEEEecCCC--------------------------------------eEEEE
Confidence            32   12222 22356999999965 67999885431                                      25556


Q ss_pred             CCCCCEEEEEECCCCCeeeceeEEEEeCCEEEEecCCCCeEEEEeC
Q 015463          360 SPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDL  405 (406)
Q Consensus       360 d~~g~~~~~~~~~~g~~~~~~s~~~~~~g~Ly~Gs~~~~~i~~~~~  405 (406)
                      +.+|...+.+....+. .....++....++||+.....+.|.+++.
T Consensus       568 d~dG~~~~~~~~~~~~-~~~P~glavd~~~lywtd~~~~~V~~~d~  612 (699)
T 1n7d_A          568 DVNGGNRKTILEDEKR-LAHPFSLAVFEDKVFWTDIINEAIFSANR  612 (699)
T ss_dssp             CSSSSCCEEECCCSSS-CSSCCCCEEETTEEEEECSTTTCEEEEET
T ss_pred             ccCCCceEEEEecCCc-CCCceEeEEECCEEEEEeCCCCeEEEEEc
Confidence            6666544444321111 11223333455688888877788887763

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.35  E-value=3.6e-11  Score=118.78  Aligned_cols=151  Identities=15%  Similarity=0.182  Sum_probs=110.1

Q ss_pred             CCcceEEEEeC-CCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccc
Q 015463          130 CGRPLGLRFDK-KTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKE  207 (406)
Q Consensus       130 ~~~p~gi~~d~-~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~  207 (406)
                      ...|.+|++|+ ++++||+++..+.|.++|++++.++.+..     ....|++|+++++|+ ||+++...+         
T Consensus       136 ~~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-----~~~~P~~ia~d~~G~~lyvad~~~~---------  201 (430)
T 3tc9_A          136 FGGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-----GLSKVRTICWTHEADSMIITNDQNN---------  201 (430)
T ss_dssp             CSCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-----CCSCEEEEEECTTSSEEEEEECCSC---------
T ss_pred             CCCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-----CCCCcceEEEeCCCCEEEEEeCCCC---------
Confidence            46799999996 36999999987789999999887776543     345799999999998 999996421         


Q ss_pred             cccccccccCCCCCCCcccCCCCeEEEEeCCCCeE-EEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcc
Q 015463          208 NIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQT-TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGN  286 (406)
Q Consensus       208 ~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~-~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~  286 (406)
                                         .....++.++++.+.. ......+..|+++++++++..+|+++...++|++++.++...  
T Consensus       202 -------------------~~~~~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~--  260 (430)
T 3tc9_A          202 -------------------NDRPNNYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET--  260 (430)
T ss_dssp             -------------------TTSEEEEEEEGGGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE--
T ss_pred             -------------------cccceEEEEeCCCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE--
Confidence                               1112467777654322 112234678999999996667999999999999999764321  


Q ss_pred             eeeee-cCCCCCCceEECCCCC-EEEEEccC
Q 015463          287 LEAFA-ILPGYPDNVRTNEKGE-FWVAIHCR  315 (406)
Q Consensus       287 ~~~~~-~l~g~pd~i~~d~~G~-lwv~~~~~  315 (406)
                      ...+. ...+.|.++++|++|+ +|++....
T Consensus       261 ~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~  291 (430)
T 3tc9_A          261 TPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQ  291 (430)
T ss_dssp             EEEEECSSSSCCEEEEECTTSSEEEEEETTT
T ss_pred             EEEEEcCCCCcceeEEEcCCCCEEEEEECCC
Confidence            12222 1224699999999999 99997654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.35  E-value=9.2e-11  Score=112.03  Aligned_cols=195  Identities=15%  Similarity=0.136  Sum_probs=130.8

Q ss_pred             CcccCcceEEEcCCCCeeEEEec-----CCEEEEEeCC--c-eeEEEeecCCCccccCCCCCcccccccCCcCCcceEEE
Q 015463           66 NQIQGPESMAFDPLGRGPYTGVA-----DGRILFWDGL--K-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLR  137 (406)
Q Consensus        66 ~~~~gpe~i~~d~~g~~ly~g~~-----~g~I~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~  137 (406)
                      +.+..|.++++|++|+++++++.     .++|++++.+  + ...+.... .                .......|.+++
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~-~----------------~~~~~~~~~~v~  126 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPP-P----------------ITLSNSFVNDLA  126 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCT-T----------------TSCTTCCCCEEE
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECCh-h----------------hcccccccceEE
Confidence            45789999999999985555554     5799999976  3 22332111 0                001134578999


Q ss_pred             EeCCCCcEEEEeC---C-CcEEEEeCCCCeEEEcccc------------cCCccc-------------ccccceEEcCCC
Q 015463          138 FDKKTGDLYIADA---Y-FGLMKVGPEGGLATSLATE------------AEGVPL-------------RFTNDLDIDDEG  188 (406)
Q Consensus       138 ~d~~~g~L~Vad~---~-~gl~~~d~~~~~~~~l~~~------------~~~~~~-------------~~~~~l~~d~dG  188 (406)
                      ++++++.+||++.   . .+|+++|+++++...+...            .++..+             ..+++|++++||
T Consensus       127 vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg  206 (343)
T 2qe8_A          127 VDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN  206 (343)
T ss_dssp             EETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTS
T ss_pred             EecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCC
Confidence            9975689999997   3 6899999987765543211            011111             247899999999


Q ss_pred             -CEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCC---Ce---------EEEecccCCCcceE
Q 015463          189 -NVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTT---KQ---------TTVLLRNLQFPNGL  255 (406)
Q Consensus       189 -~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t---~~---------~~~~~~~~~~~ngi  255 (406)
                       .+|+++..                                ..+|++++...   +.         +..+ .....|+|+
T Consensus       207 ~~ly~~~~~--------------------------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-g~~g~pdgi  253 (343)
T 2qe8_A          207 EWLYLSPMH--------------------------------STSMYRIKSADLSNLQLTDAELGSKIERY-SEKPICDGI  253 (343)
T ss_dssp             CEEEEEESS--------------------------------CSEEEEEEHHHHTCTTCCHHHHHTTCEEE-EECCSCSCE
T ss_pred             CEEEEEeCC--------------------------------CCeEEEEEHHHhcCCCCChhhhhcceEec-ccCCCCceE
Confidence             59998754                                14688887421   10         1111 123478999


Q ss_pred             EEecCCCEEEEEeCCCCeEEEEEe-eCCCCcceeeeecC--CCCCCceEECCCCCEEEEEccC
Q 015463          256 SLSKDKSFFVFCEGSVGRLHKYWL-IGEKAGNLEAFAIL--PGYPDNVRTNEKGEFWVAIHCR  315 (406)
Q Consensus       256 ~l~~d~~~l~v~~t~~~~i~~~~~-~g~~~~~~~~~~~l--~g~pd~i~~d~~G~lwv~~~~~  315 (406)
                      ++++|+ .+|+++...++|.+++. .|    +...+...  ...|++++++++|++||+....
T Consensus       254 a~d~~G-~l~va~~~~~~V~~~d~~~G----~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~  311 (343)
T 2qe8_A          254 SIDKDH-NIYVGDLAHSAIGVITSADR----AYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQL  311 (343)
T ss_dssp             EECTTC-CEEEEEGGGTEEEEEETTTT----EEEEEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred             EECCCC-CEEEEccCCCeEEEEECCCC----CEEEEEECCceecCCeeEECCCCcEEEEeCcc
Confidence            999987 58999988899999997 33    33333332  2469999999999999998643

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.35  E-value=1e-09  Score=103.04  Aligned_cols=182  Identities=9%  Similarity=-0.008  Sum_probs=117.9

Q ss_pred             ccCcceEEEcCCCCeeEEEec-CCEEEEEeCC--ce-eEEEeecCCCccccCCCCCcccccccCCcCCcceE-EEEeCCC
Q 015463           68 IQGPESMAFDPLGRGPYTGVA-DGRILFWDGL--KW-TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLG-LRFDKKT  142 (406)
Q Consensus        68 ~~gpe~i~~d~~g~~ly~g~~-~g~I~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g-i~~d~~~  142 (406)
                      ...| +++++++|+.+|+... ++.|+.++..  .. .....                       ....|.. +++++ +
T Consensus        40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-----------------------~~~~~~~~~~~s~-d   94 (331)
T 3u4y_A           40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ-----------------------EGQSSMADVDITP-D   94 (331)
T ss_dssp             CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEE-----------------------ECSSCCCCEEECT-T
T ss_pred             CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecc-----------------------cCCCCccceEECC-C
Confidence            4556 9999999987777655 7899999976  32 11111                       1234666 89999 5


Q ss_pred             Cc-EEEEeCCC----cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhcccccccccccccc
Q 015463          143 GD-LYIADAYF----GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSS  216 (406)
Q Consensus       143 g~-L~Vad~~~----gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e  216 (406)
                      |+ |+ +....    .|..+|.++++.......     ...++++++++||+ +|+++..                    
T Consensus        95 g~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~~-----~~~~~~~~~spdg~~l~~~~~~--------------------  148 (331)
T 3u4y_A           95 DQFAV-TVTGLNHPFNMQSYSFLKNKFISTIPI-----PYDAVGIAISPNGNGLILIDRS--------------------  148 (331)
T ss_dssp             SSEEE-ECCCSSSSCEEEEEETTTTEEEEEEEC-----CTTEEEEEECTTSSCEEEEEET--------------------
T ss_pred             CCEEE-EecCCCCcccEEEEECCCCCeEEEEEC-----CCCccceEECCCCCEEEEEecC--------------------
Confidence            65 56 44443    699999988865432211     12468999999995 8888642                    


Q ss_pred             CCCCCCCcccCCCCe-EEEEeCCC-CeE----EEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcc-eee
Q 015463          217 LNDPSPIKITKDTGR-VLKYDPTT-KQT----TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGN-LEA  289 (406)
Q Consensus       217 ~~~~~~~~~~~~~g~-l~~~d~~t-~~~----~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~-~~~  289 (406)
                                  .+. +..|+.+. +..    .........+.++++++|++.+|++....+.|..+++...+... ...
T Consensus       149 ------------~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~  216 (331)
T 3u4y_A          149 ------------SANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNA  216 (331)
T ss_dssp             ------------TTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEE
T ss_pred             ------------CCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeee
Confidence                        123 43333221 222    11223345678999999999999998878899999976432200 111


Q ss_pred             eecCCCCCCceEECCCCC-EEEEEc
Q 015463          290 FAILPGYPDNVRTNEKGE-FWVAIH  313 (406)
Q Consensus       290 ~~~l~g~pd~i~~d~~G~-lwv~~~  313 (406)
                      + .....|.+++++++|+ +|++..
T Consensus       217 ~-~~~~~~~~~~~spdg~~l~v~~~  240 (331)
T 3u4y_A          217 V-GTNNLPGTIVVSRDGSTVYVLTE  240 (331)
T ss_dssp             E-ECSSCCCCEEECTTSSEEEEECS
T ss_pred             c-cCCCCCceEEECCCCCEEEEEEc
Confidence            1 2345688999999999 777754

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.28  E-value=3.2e-09  Score=98.35  Aligned_cols=217  Identities=12%  Similarity=0.061  Sum_probs=143.1

Q ss_pred             CCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCCCcEEEE
Q 015463           79 LGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKV  157 (406)
Q Consensus        79 ~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~~gl~~~  157 (406)
                      .|++++++..+++|+.++.+ .-.........                    ...+.++++.+ +|+++++ ..++++.+
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~--------------------~~~~~~~~~~p-dG~ilvs-~~~~V~~~   61 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEK--------------------GWECNSVAATK-AGEILFS-YSKGAKMI   61 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCT--------------------TCCCCEEEECT-TSCEEEE-CBSEEEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCc--------------------cCCCcCeEECC-CCCEEEe-CCCCEEEE
Confidence            35668888999999999985 22222111100                    12467888998 8999994 46789999


Q ss_pred             eCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeC
Q 015463          158 GPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDP  237 (406)
Q Consensus       158 d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~  237 (406)
                      |+++..+..+... .   ...++++.+.+||+++++++.                               ..++++.+|+
T Consensus        62 d~~G~~~W~~~~~-~---~~~~~~~~~~~dG~~lv~~~~-------------------------------~~~~v~~vd~  106 (276)
T 3no2_A           62 TRDGRELWNIAAP-A---GCEMQTARILPDGNALVAWCG-------------------------------HPSTILEVNM  106 (276)
T ss_dssp             CTTSCEEEEEECC-T---TCEEEEEEECTTSCEEEEEES-------------------------------TTEEEEEECT
T ss_pred             CCCCCEEEEEcCC-C---CccccccEECCCCCEEEEecC-------------------------------CCCEEEEEeC
Confidence            9965555544321 1   123556788899999999742                               1367899998


Q ss_pred             CCCeEEEec--cc----CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee-cCCCCCCceEECCCCCEEE
Q 015463          238 TTKQTTVLL--RN----LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPGYPDNVRTNEKGEFWV  310 (406)
Q Consensus       238 ~t~~~~~~~--~~----~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~-~l~g~pd~i~~d~~G~lwv  310 (406)
                      +.+.+..+.  ..    ...+.+++..+|++.+ ++....++|..++.+|.     .++. ..++.|.++...++|+++|
T Consensus       107 ~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~l-v~~~~~~~v~~~d~~G~-----~~w~~~~~~~~~~~~~~~~g~~~v  180 (276)
T 3no2_A          107 KGEVLSKTEFETGIERPHAQFRQINKNKKGNYL-VPLFATSEVREIAPNGQ-----LLNSVKLSGTPFSSAFLDNGDCLV  180 (276)
T ss_dssp             TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEE-EEETTTTEEEEECTTSC-----EEEEEECSSCCCEEEECTTSCEEE
T ss_pred             CCCEEEEEeccCCCCcccccccCceECCCCCEE-EEecCCCEEEEECCCCC-----EEEEEECCCCccceeEcCCCCEEE
Confidence            655444432  11    2345678888999855 66777889999987642     1222 3345678888889999998


Q ss_pred             EEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCC-CCEEEEEECCC--CCeeeceeEEE-Ee
Q 015463          311 AIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPE-GKILQVLEDSK--GKVVKAISEVE-EK  386 (406)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~~~~--g~~~~~~s~~~-~~  386 (406)
                      +....                                      ..++++|++ |++++.+...+  +..+..++++. ..
T Consensus       181 ~~~~~--------------------------------------~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~  222 (276)
T 3no2_A          181 ACGDA--------------------------------------HCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQ  222 (276)
T ss_dssp             ECBTT--------------------------------------SEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECT
T ss_pred             EeCCC--------------------------------------CeEEEEeCcCCcEEEEecCCCCCCccccccccceEcC
Confidence            86543                                      137889998 99999986432  22233344443 46


Q ss_pred             CCEEEEecCC
Q 015463          387 DGKLWMGSVL  396 (406)
Q Consensus       387 ~g~Ly~Gs~~  396 (406)
                      +|++|++++.
T Consensus       223 ~G~i~v~~~~  232 (276)
T 3no2_A          223 NGGLYICNWQ  232 (276)
T ss_dssp             TSCEEEEEEC
T ss_pred             CCCEEEEecc
Confidence            8899999863

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.26  E-value=4.2e-10  Score=111.88  Aligned_cols=160  Identities=13%  Similarity=0.153  Sum_probs=112.6

Q ss_pred             CCcceEEEEeC-CCCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEE-------cCCCC-EEEEeCCCch
Q 015463          130 CGRPLGLRFDK-KTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDI-------DDEGN-VYFTDSSTNY  199 (406)
Q Consensus       130 ~~~p~gi~~d~-~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~-------d~dG~-ly~t~~~~~~  199 (406)
                      ...|.+|++|+ ++++|||++.. ++|.++|++++.++.+..... ..+..|++|++       +++|+ ||+++.....
T Consensus       138 ~~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~-~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~  216 (496)
T 3kya_A          138 FSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINT-IPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGK  216 (496)
T ss_dssp             CCSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTT-SSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTT
T ss_pred             cCCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCc-cccCCCcEEEEeecccccCCCCCEEEEEeCCCCC
Confidence            45699999997 36899999875 679999999998887754322 24667999999       99997 9999864210


Q ss_pred             hhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCC-CeEE-----EecccCCCcceEEEecCCCEEEEEeCCCCe
Q 015463          200 QRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTT-KQTT-----VLLRNLQFPNGLSLSKDKSFFVFCEGSVGR  273 (406)
Q Consensus       200 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t-~~~~-----~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~  273 (406)
                      .                          ...-.++.++++. +++.     ........|++++++++++.||+++...++
T Consensus       217 ~--------------------------~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~  270 (496)
T 3kya_A          217 G--------------------------DESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQ  270 (496)
T ss_dssp             G--------------------------GGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTE
T ss_pred             c--------------------------ccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCE
Confidence            0                          0012477776554 2331     122245689999999988899999998899


Q ss_pred             EEEEEee-------CCCC------c----ceeeeec-CCCCCCceEECCCCC-EEEEEccCC
Q 015463          274 LHKYWLI-------GEKA------G----NLEAFAI-LPGYPDNVRTNEKGE-FWVAIHCRR  316 (406)
Q Consensus       274 i~~~~~~-------g~~~------~----~~~~~~~-l~g~pd~i~~d~~G~-lwv~~~~~~  316 (406)
                      |++++++       +...      .    ..+++.. ..+.|.+++++++|+ +||+....+
T Consensus       271 V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h  332 (496)
T 3kya_A          271 VFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNH  332 (496)
T ss_dssp             EEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTT
T ss_pred             EEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCC
Confidence            9999987       3322      0    1122321 224578999999999 899986553

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.25  E-value=4.3e-09  Score=97.42  Aligned_cols=223  Identities=13%  Similarity=0.090  Sum_probs=142.2

Q ss_pred             cCcceEEEcCCCCeeEEEecCCEEEEEeCC-c-eeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEE
Q 015463           69 QGPESMAFDPLGRGPYTGVADGRILFWDGL-K-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~  146 (406)
                      ..+.+++++++|+ +++ +.+++|+.++++ + +-++..  ..                    ...+.+..+.+ +|+++
T Consensus        37 ~~~~~~~~~pdG~-ilv-s~~~~V~~~d~~G~~~W~~~~--~~--------------------~~~~~~~~~~~-dG~~l   91 (276)
T 3no2_A           37 WECNSVAATKAGE-ILF-SYSKGAKMITRDGRELWNIAA--PA--------------------GCEMQTARILP-DGNAL   91 (276)
T ss_dssp             CCCCEEEECTTSC-EEE-ECBSEEEEECTTSCEEEEEEC--CT--------------------TCEEEEEEECT-TSCEE
T ss_pred             CCCcCeEECCCCC-EEE-eCCCCEEEECCCCCEEEEEcC--CC--------------------CccccccEECC-CCCEE
Confidence            3588999999999 555 567889999986 2 112211  00                    01245667777 89999


Q ss_pred             EEeCC--CcEEEEeCCCCeEEEcccccC-CcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCC
Q 015463          147 IADAY--FGLMKVGPEGGLATSLATEAE-GVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPI  223 (406)
Q Consensus       147 Vad~~--~gl~~~d~~~~~~~~l~~~~~-~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  223 (406)
                      |++..  ..++.+++++..+..+..... ..+...+..++++++|++++++..                           
T Consensus        92 v~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~---------------------------  144 (276)
T 3no2_A           92 VAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA---------------------------  144 (276)
T ss_dssp             EEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT---------------------------
T ss_pred             EEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC---------------------------
Confidence            98765  468899997766555432111 123345778889999999998753                           


Q ss_pred             cccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee-CCCCcceeeee--cCCC----C
Q 015463          224 KITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI-GEKAGNLEAFA--ILPG----Y  296 (406)
Q Consensus       224 ~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~-g~~~~~~~~~~--~l~g----~  296 (406)
                           .++|+.||++.+.+..+.. ...+.+++..++++.+ ++....++|..++.+ |..   .-.+.  ++++    .
T Consensus       145 -----~~~v~~~d~~G~~~w~~~~-~~~~~~~~~~~~g~~~-v~~~~~~~v~~~d~~tG~~---~w~~~~~~~~~~~l~~  214 (276)
T 3no2_A          145 -----TSEVREIAPNGQLLNSVKL-SGTPFSSAFLDNGDCL-VACGDAHCFVQLNLESNRI---VRRVNANDIEGVQLFF  214 (276)
T ss_dssp             -----TTEEEEECTTSCEEEEEEC-SSCCCEEEECTTSCEE-EECBTTSEEEEECTTTCCE---EEEEEGGGSBSCCCSE
T ss_pred             -----CCEEEEECCCCCEEEEEEC-CCCccceeEcCCCCEE-EEeCCCCeEEEEeCcCCcE---EEEecCCCCCCccccc
Confidence                 4789999998444444332 2456778888888754 555666789998866 321   01111  1222    2


Q ss_pred             CCceEECCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCCEEEEEECCCCCe
Q 015463          297 PDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKV  376 (406)
Q Consensus       297 pd~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~  376 (406)
                      |.++...++|+++|+...++.....                            ......+++++++|++++.|.+...  
T Consensus       215 ~~~~~~~~~G~i~v~~~~g~~~~~~----------------------------~~~~~~~~~~~~~g~~~W~~~~~~~--  264 (276)
T 3no2_A          215 VAQLFPLQNGGLYICNWQGHDREAG----------------------------KGKHPQLVEIDSEGKVVWQLNDKVK--  264 (276)
T ss_dssp             EEEEEECTTSCEEEEEECTTCTTGG----------------------------GSCCCSEEEECTTSBEEEEECCTTT--
T ss_pred             cccceEcCCCCEEEEeccCcccccc----------------------------ccCCceEEEECCCCCEEEEecCccc--
Confidence            6788889999999998644211000                            0012238899999999999975433  


Q ss_pred             eeceeEE
Q 015463          377 VKAISEV  383 (406)
Q Consensus       377 ~~~~s~~  383 (406)
                      +..+|.+
T Consensus       265 ~~~~~~~  271 (276)
T 3no2_A          265 FGMISTI  271 (276)
T ss_dssp             SCCCCEE
T ss_pred             ccceeee
Confidence            3455554

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.25  E-value=2e-08  Score=96.50  Aligned_cols=184  Identities=13%  Similarity=0.171  Sum_probs=127.6

Q ss_pred             cCcceEEEcCCCCeeE-EEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEE
Q 015463           69 QGPESMAFDPLGRGPY-TGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly-~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~V  147 (406)
                      ..|.+++++++|+.+| ++..++.|..|+....+......                     ....+.++++++++..|++
T Consensus        32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~---------------------~~~~v~~~~~spdg~~l~~   90 (391)
T 1l0q_A           32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP---------------------AGSSPQGVAVSPDGKQVYV   90 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE---------------------CSSSEEEEEECTTSSEEEE
T ss_pred             CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE---------------------CCCCccceEECCCCCEEEE
Confidence            3578999999998665 55688999999976211111110                     0235789999994445778


Q ss_pred             EeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCCCCCCcc
Q 015463          148 ADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKI  225 (406)
Q Consensus       148 ad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  225 (406)
                      +... +.|..+|.++++.......     ...+.+++++++|+ +|++...                             
T Consensus        91 ~~~~~~~v~v~d~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~~~-----------------------------  136 (391)
T 1l0q_A           91 TNMASSTLSVIDTTSNTVAGTVKT-----GKSPLGLALSPDGKKLYVTNNG-----------------------------  136 (391)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEEC-----SSSEEEEEECTTSSEEEEEETT-----------------------------
T ss_pred             EECCCCEEEEEECCCCeEEEEEeC-----CCCcceEEECCCCCEEEEEeCC-----------------------------
Confidence            8765 6799999998865443221     12467899999996 6677542                             


Q ss_pred             cCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCC
Q 015463          226 TKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEK  305 (406)
Q Consensus       226 ~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~  305 (406)
                         .+.|+.+|..+++..........+..+++++|++.++++....+.|..+++...   ...........+..++++++
T Consensus       137 ---~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~~  210 (391)
T 1l0q_A          137 ---DKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN---SVIDTVKVEAAPSGIAVNPE  210 (391)
T ss_dssp             ---TTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEECSSEEEEEEECTT
T ss_pred             ---CCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC---eEEEEEecCCCccceEECCC
Confidence               378999999988876655555667899999999999888877789999987532   21111222334667888999


Q ss_pred             CC-EEEEEc
Q 015463          306 GE-FWVAIH  313 (406)
Q Consensus       306 G~-lwv~~~  313 (406)
                      |+ +|++..
T Consensus       211 g~~l~~~~~  219 (391)
T 1l0q_A          211 GTKAYVTNV  219 (391)
T ss_dssp             SSEEEEEEE
T ss_pred             CCEEEEEec
Confidence            87 666653

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.25  E-value=7.2e-09  Score=98.22  Aligned_cols=200  Identities=14%  Similarity=0.101  Sum_probs=125.7

Q ss_pred             ccCcceEEEcCCCCeeEEEe-cCCEEEEEeCC---ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC
Q 015463           68 IQGPESMAFDPLGRGPYTGV-ADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (406)
Q Consensus        68 ~~gpe~i~~d~~g~~ly~g~-~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g  143 (406)
                      ...|.+++++++|+.+|++. .++.|..|+.+   ....+..........           ........|.++++++ +|
T Consensus        85 ~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p-----------~~~~~~~~~~~~~~sp-dg  152 (347)
T 3hfq_A           85 GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGP-----------RPEQDGSHIHYTDLTP-DN  152 (347)
T ss_dssp             SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCS-----------STTCSSCCEEEEEECT-TS
T ss_pred             CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCC-----------CccccCCCceEEEECC-CC
Confidence            45789999999999888877 56888877753   333332211100000           0001134578899999 77


Q ss_pred             cEEEEeCCC-cEEEEeCC-CCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCCC
Q 015463          144 DLYIADAYF-GLMKVGPE-GGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDP  220 (406)
Q Consensus       144 ~L~Vad~~~-gl~~~d~~-~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~  220 (406)
                      ++|+++... .|..++.+ ++++...... .......|+++++++||+ +|+++..                        
T Consensus       153 ~l~v~~~~~~~v~~~~~~~~g~~~~~~~~-~~~~g~~p~~~~~spdg~~l~v~~~~------------------------  207 (347)
T 3hfq_A          153 RLAVIDLGSDKVYVYNVSDAGQLSEQSVL-TMEAGFGPRHLVFSPDGQYAFLAGEL------------------------  207 (347)
T ss_dssp             CEEEEETTTTEEEEEEECTTSCEEEEEEE-ECCTTCCEEEEEECTTSSEEEEEETT------------------------
T ss_pred             cEEEEeCCCCEEEEEEECCCCcEEEeeeE-EcCCCCCCceEEECCCCCEEEEEeCC------------------------
Confidence            799998764 58788876 5554433211 111123577899999997 8887643                        


Q ss_pred             CCCcccCCCCe--EEEEeCCCCeEEEec--ccC-------CCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceee
Q 015463          221 SPIKITKDTGR--VLKYDPTTKQTTVLL--RNL-------QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEA  289 (406)
Q Consensus       221 ~~~~~~~~~g~--l~~~d~~t~~~~~~~--~~~-------~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~  289 (406)
                              .+.  ++.++..+++.+...  ...       ..+.+++++||++.+|++....+.|..|+++..  +..+.
T Consensus       208 --------~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~--g~~~~  277 (347)
T 3hfq_A          208 --------SSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD--GHLTL  277 (347)
T ss_dssp             --------TTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG--GCEEE
T ss_pred             --------CCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC--CcEEE
Confidence                    134  455555456654332  111       236679999999999999877789999988621  22233


Q ss_pred             eec--C-CCCCCceEECCCCC-EEEEEcc
Q 015463          290 FAI--L-PGYPDNVRTNEKGE-FWVAIHC  314 (406)
Q Consensus       290 ~~~--l-~g~pd~i~~d~~G~-lwv~~~~  314 (406)
                      ...  . ...|.+++++++|+ +|++...
T Consensus       278 ~~~~~~~~~~~~~~~~spdg~~l~v~~~~  306 (347)
T 3hfq_A          278 IQQISTEGDFPRDFDLDPTEAFVVVVNQN  306 (347)
T ss_dssp             EEEEECSSSCCCEEEECTTSSEEEEEETT
T ss_pred             eEEEecCCCCcCeEEECCCCCEEEEEEcC
Confidence            322  2 33689999999998 6776643

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.23  E-value=1e-08  Score=96.12  Aligned_cols=190  Identities=15%  Similarity=0.226  Sum_probs=119.4

Q ss_pred             cCcceEEEcCCCCeeEEEecC-CEEEEEeCC----ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC
Q 015463           69 QGPESMAFDPLGRGPYTGVAD-GRILFWDGL----KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~~-g~I~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g  143 (406)
                      ..|.+++++++|+.+|++..+ +.|..|+.+    ..+.+....                     ..+.|.++++++ +|
T Consensus        38 ~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~s~-dg   95 (343)
T 1ri6_A           38 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA---------------------LPGSLTHISTDH-QG   95 (343)
T ss_dssp             SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE---------------------CSSCCSEEEECT-TS
T ss_pred             CCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccc---------------------cCCCCcEEEEcC-CC
Confidence            478999999999988888776 888876643    333222111                     123688999999 55


Q ss_pred             c-EEEEeCCC-cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCCC
Q 015463          144 D-LYIADAYF-GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDP  220 (406)
Q Consensus       144 ~-L~Vad~~~-gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~  220 (406)
                      + ||++.... .|..++.+.+...........  ...+.+++++++|+ +|+++..                        
T Consensus        96 ~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~------------------------  149 (343)
T 1ri6_A           96 QFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG--LDGCHSANISPDNRTLWVPALK------------------------  149 (343)
T ss_dssp             SEEEEEETTTTEEEEEEEETTEEEEEEEEECC--CTTBCCCEECTTSSEEEEEEGG------------------------
T ss_pred             CEEEEEecCCCeEEEEECCCCccccccccccC--CCCceEEEECCCCCEEEEecCC------------------------
Confidence            5 88887644 477787733322111111111  12478899999996 7776522                        


Q ss_pred             CCCcccCCCCeEEEEeCCC-CeEEEe------cccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCccee---ee
Q 015463          221 SPIKITKDTGRVLKYDPTT-KQTTVL------LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLE---AF  290 (406)
Q Consensus       221 ~~~~~~~~~g~l~~~d~~t-~~~~~~------~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~---~~  290 (406)
                              .+.|..||..+ ++....      ......+.++++++|++.+|++....+.|..++++.. .+..+   .+
T Consensus       150 --------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~-~g~~~~~~~~  220 (343)
T 1ri6_A          150 --------QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDP-HGNIECVQTL  220 (343)
T ss_dssp             --------GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCT-TSCCEEEEEE
T ss_pred             --------CCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCC-CCcEEEEeec
Confidence                    26788888776 655321      1223467789999999999999877789999988531 12221   12


Q ss_pred             ecCC-C-----CCCceEECCCCC-EEEEEccC
Q 015463          291 AILP-G-----YPDNVRTNEKGE-FWVAIHCR  315 (406)
Q Consensus       291 ~~l~-g-----~pd~i~~d~~G~-lwv~~~~~  315 (406)
                      ...+ +     .+..++++++|+ +|++....
T Consensus       221 ~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~  252 (343)
T 1ri6_A          221 DMMPENFSDTRWAADIHITPDGRHLYACDRTA  252 (343)
T ss_dssp             ECSCTTCCSCCCEEEEEECTTSSEEEEEETTT
T ss_pred             cccCccccccCCccceEECCCCCEEEEEecCC
Confidence            2121 1     233588999997 66666433

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.19  E-value=1.2e-09  Score=103.51  Aligned_cols=181  Identities=16%  Similarity=0.167  Sum_probs=120.2

Q ss_pred             CcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEE
Q 015463           70 GPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~V  147 (406)
                      .|.+++++++|+ +|+++. .+|++++.+  .++.+.....                  .....++.++++|+ +|++|+
T Consensus        91 ~v~~i~~~~dg~-l~v~~~-~gl~~~d~~~g~~~~~~~~~~------------------~~~~~~~~~i~~d~-~G~l~v  149 (326)
T 2ghs_A           91 MGSALAKISDSK-QLIASD-DGLFLRDTATGVLTLHAELES------------------DLPGNRSNDGRMHP-SGALWI  149 (326)
T ss_dssp             CEEEEEEEETTE-EEEEET-TEEEEEETTTCCEEEEECSST------------------TCTTEEEEEEEECT-TSCEEE
T ss_pred             cceEEEEeCCCe-EEEEEC-CCEEEEECCCCcEEEEeeCCC------------------CCCCCCCCCEEECC-CCCEEE
Confidence            578899999998 788774 469999975  4444422110                  01134688999999 899999


Q ss_pred             EeCC-------CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCC
Q 015463          148 ADAY-------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLND  219 (406)
Q Consensus       148 ad~~-------~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~  219 (406)
                      ++..       .+|++++  +++++.+...     ...++++++++||+ +|++++.                       
T Consensus       150 ~~~~~~~~~~~~~l~~~~--~g~~~~~~~~-----~~~~~~i~~s~dg~~lyv~~~~-----------------------  199 (326)
T 2ghs_A          150 GTMGRKAETGAGSIYHVA--KGKVTKLFAD-----ISIPNSICFSPDGTTGYFVDTK-----------------------  199 (326)
T ss_dssp             EEEETTCCTTCEEEEEEE--TTEEEEEEEE-----ESSEEEEEECTTSCEEEEEETT-----------------------
T ss_pred             EeCCCcCCCCceEEEEEe--CCcEEEeeCC-----CcccCCeEEcCCCCEEEEEECC-----------------------
Confidence            9852       4799999  4665544321     23578999999994 8998753                       


Q ss_pred             CCCCcccCCCCeEEEEeCC--CC-eE---EEec---ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeee
Q 015463          220 PSPIKITKDTGRVLKYDPT--TK-QT---TVLL---RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAF  290 (406)
Q Consensus       220 ~~~~~~~~~~g~l~~~d~~--t~-~~---~~~~---~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~  290 (406)
                               .++|++||.+  ++ +.   +.+.   .....+.++++++++. +|++....++|.+|+.++.   ....+
T Consensus       200 ---------~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~~g~---~~~~i  266 (326)
T 2ghs_A          200 ---------VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTDGN---HIARY  266 (326)
T ss_dssp             ---------TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTTCC---EEEEE
T ss_pred             ---------CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCC-EEEEEeCCCEEEEECCCCC---EEEEE
Confidence                     2678888864  55 32   2221   1234578999999885 7787766689999986432   11122


Q ss_pred             ecCCC-CCCceEEC-CCC-CEEEEEccC
Q 015463          291 AILPG-YPDNVRTN-EKG-EFWVAIHCR  315 (406)
Q Consensus       291 ~~l~g-~pd~i~~d-~~G-~lwv~~~~~  315 (406)
                       .++. .|.+++++ +++ .+||++...
T Consensus       267 -~~~~~~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          267 -EVPGKQTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             -ECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             -ECCCCCcEEEEEecCCCCEEEEEecCC
Confidence             2322 36678886 665 499998654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.18  E-value=4.4e-08  Score=93.32  Aligned_cols=194  Identities=11%  Similarity=0.130  Sum_probs=116.7

Q ss_pred             cccCcceEEEcCCCCeeEEEecC----CEEE--EEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEE
Q 015463           67 QIQGPESMAFDPLGRGPYTGVAD----GRIL--FWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRF  138 (406)
Q Consensus        67 ~~~gpe~i~~d~~g~~ly~g~~~----g~I~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~  138 (406)
                      ....|..++++++|+.+|++..+    +.|.  .++.+  ..+.+....                    .....|..+++
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~--------------------~~~~~p~~~~~  107 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQK--------------------TMGADPCYLTT  107 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEE--------------------CSSSCEEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEec--------------------cCCCCcEEEEE
Confidence            45789999999999988988774    6774  44543  233332211                    11345788888


Q ss_pred             eCCCCcEEEEeCC-CcEEEEeCCC-CeEEEcccc--cCC-------cccccccceEEcCCCC-EEEEeCCCchhhhcccc
Q 015463          139 DKKTGDLYIADAY-FGLMKVGPEG-GLATSLATE--AEG-------VPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQK  206 (406)
Q Consensus       139 d~~~g~L~Vad~~-~gl~~~d~~~-~~~~~l~~~--~~~-------~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~  206 (406)
                      +  +..||+++.. +.+..++.+. +.+..+...  ..+       .....+.++++++||+ +|+++..          
T Consensus       108 d--g~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~----------  175 (361)
T 3scy_A          108 N--GKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG----------  175 (361)
T ss_dssp             C--SSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT----------
T ss_pred             C--CCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC----------
Confidence            3  6679999865 3477777653 222211110  011       0122457799999997 8887743          


Q ss_pred             ccccccccccCCCCCCCcccCCCCeEEEE--eCCCC----e-E-------EEecccCCCcceEEEecCCCEEEEEeCCCC
Q 015463          207 ENIPLQLCSSLNDPSPIKITKDTGRVLKY--DPTTK----Q-T-------TVLLRNLQFPNGLSLSKDKSFFVFCEGSVG  272 (406)
Q Consensus       207 ~~~~~~~~~e~~~~~~~~~~~~~g~l~~~--d~~t~----~-~-------~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~  272 (406)
                                            .+.+..|  +..++    + +       .........+.+++++||++.+|++....+
T Consensus       176 ----------------------~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~  233 (361)
T 3scy_A          176 ----------------------TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGG  233 (361)
T ss_dssp             ----------------------TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTC
T ss_pred             ----------------------CCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCC
Confidence                                  2345444  55443    2 2       112233456788999999999999987778


Q ss_pred             eEEEEEeeCCCCcceeeeecCC---CCCCceEECCCCC-EEEEEcc
Q 015463          273 RLHKYWLIGEKAGNLEAFAILP---GYPDNVRTNEKGE-FWVAIHC  314 (406)
Q Consensus       273 ~i~~~~~~g~~~~~~~~~~~l~---g~pd~i~~d~~G~-lwv~~~~  314 (406)
                      .|..|+++.........+...+   ..|..++++++|+ +|++...
T Consensus       234 ~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~  279 (361)
T 3scy_A          234 TVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL  279 (361)
T ss_dssp             EEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS
T ss_pred             eEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC
Confidence            9999998732111111111111   1245789999998 6666654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.17  E-value=1.3e-08  Score=95.38  Aligned_cols=183  Identities=10%  Similarity=0.048  Sum_probs=116.8

Q ss_pred             EcCCCCeeE-EEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-EEEEeCC
Q 015463           76 FDPLGRGPY-TGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYIADAY  151 (406)
Q Consensus        76 ~d~~g~~ly-~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-L~Vad~~  151 (406)
                      ++.+++.+| +...++.|..++..  +.......                      ....| ++++++ +|+ ||++...
T Consensus         5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~----------------------~~~~~-~~~~s~-dg~~l~~~~~~   60 (331)
T 3u4y_A            5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQITL----------------------GYDFV-DTAITS-DCSNVVVTSDF   60 (331)
T ss_dssp             --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEEC----------------------CCCEE-EEEECS-SSCEEEEEEST
T ss_pred             EcCCCCEEEEEecCCCeEEEEeCcccceeeeEEc----------------------cCCcc-eEEEcC-CCCEEEEEeCC
Confidence            334444445 45667899999976  22221111                      02335 899999 565 8998874


Q ss_pred             -CcEEEEeCCCCeE-EEcccccCCcccccccc-eEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCC
Q 015463          152 -FGLMKVGPEGGLA-TSLATEAEGVPLRFTND-LDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKD  228 (406)
Q Consensus       152 -~gl~~~d~~~~~~-~~l~~~~~~~~~~~~~~-l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  228 (406)
                       ..|+.+|.++++. ......     ...+.. ++++++|+..++...                             ...
T Consensus        61 ~~~i~~~d~~~~~~~~~~~~~-----~~~~~~~~~~s~dg~~l~~~~~-----------------------------~~~  106 (331)
T 3u4y_A           61 CQTLVQIETQLEPPKVVAIQE-----GQSSMADVDITPDDQFAVTVTG-----------------------------LNH  106 (331)
T ss_dssp             TCEEEEEECSSSSCEEEEEEE-----CSSCCCCEEECTTSSEEEECCC-----------------------------SSS
T ss_pred             CCeEEEEECCCCceeEEeccc-----CCCCccceEECCCCCEEEEecC-----------------------------CCC
Confidence             6799999988875 222111     123556 899999975554321                             101


Q ss_pred             CCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCe-EEEEEeeCCCC-cce-eeeecCCCCCCceEECCC
Q 015463          229 TGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGR-LHKYWLIGEKA-GNL-EAFAILPGYPDNVRTNEK  305 (406)
Q Consensus       229 ~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~-i~~~~~~g~~~-~~~-~~~~~l~g~pd~i~~d~~  305 (406)
                      .+.|..+|.++++..........+++++++||++.+|++....+. |..|+++.... ... .........|.+++++++
T Consensus       107 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spd  186 (331)
T 3u4y_A          107 PFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPD  186 (331)
T ss_dssp             SCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTT
T ss_pred             cccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCC
Confidence            127999999988876655555667899999999999998876677 88888763211 011 111122334788999999


Q ss_pred             CC-EEEEEccCC
Q 015463          306 GE-FWVAIHCRR  316 (406)
Q Consensus       306 G~-lwv~~~~~~  316 (406)
                      |+ +|++.....
T Consensus       187 g~~l~v~~~~~~  198 (331)
T 3u4y_A          187 GNFAFVANLIGN  198 (331)
T ss_dssp             SSEEEEEETTTT
T ss_pred             CCEEEEEeCCCC
Confidence            98 888875543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=99.15  E-value=1.3e-09  Score=108.17  Aligned_cols=182  Identities=12%  Similarity=0.147  Sum_probs=114.6

Q ss_pred             CcccCcceEEEcCCCCeeEEEecCC-EEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC-
Q 015463           66 NQIQGPESMAFDPLGRGPYTGVADG-RILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK-  141 (406)
Q Consensus        66 ~~~~gpe~i~~d~~g~~ly~g~~~g-~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~-  141 (406)
                      .++..|.+|+++++|+ +|++...| +|++++..  ..+.+......    .          ......+.++||+++++ 
T Consensus        24 ~~l~~P~~~a~~pdG~-l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~----~----------~~~~g~~Gllgia~~Pdf   88 (454)
T 1cru_A           24 SNLNKPHALLWGPDNQ-IWLTERATGKILRVNPESGSVKTVFQVPEI----V----------NDADGQNGLLGFAFHPDF   88 (454)
T ss_dssp             CCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTC----C----------CCTTSSCSEEEEEECTTT
T ss_pred             CCCCCceEEEEcCCCc-EEEEEcCCCEEEEEECCCCcEeEEecCCcc----c----------cccCCCCceeEEEECCCc
Confidence            4688999999999999 77777765 79999864  34444322110    0          00012456899999985 


Q ss_pred             --CCcEEEEeCC-------------CcEEEEeCCCC--e---EEEcccccCCcccccccceEEcCCCCEEEEeCCCchhh
Q 015463          142 --TGDLYIADAY-------------FGLMKVGPEGG--L---ATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQR  201 (406)
Q Consensus       142 --~g~L~Vad~~-------------~gl~~~d~~~~--~---~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~  201 (406)
                        ++.|||+.+.             ..|++++.+.+  .   .+.+............+.|++++||+||++........
T Consensus        89 ~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~  168 (454)
T 1cru_A           89 KNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQ  168 (454)
T ss_dssp             TTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTS
T ss_pred             CcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCC
Confidence              7899999852             36888876432  2   23333322233356789999999999999965321100


Q ss_pred             hccccccccccccccCCCCCC---------CcccCCCCeEEEEeCCCC-----------eEEEecccCCCcceEEEecCC
Q 015463          202 RQMQKENIPLQLCSSLNDPSP---------IKITKDTGRVLKYDPTTK-----------QTTVLLRNLQFPNGLSLSKDK  261 (406)
Q Consensus       202 ~~~~~~~~~~~~~~e~~~~~~---------~~~~~~~g~l~~~d~~t~-----------~~~~~~~~~~~~ngi~l~~d~  261 (406)
                      ..         .+.+..+.+.         -......|+|+|+++++.           ..+.+..++.+|.|+++++++
T Consensus       169 ~~---------~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp~G  239 (454)
T 1cru_A          169 LA---------YLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNG  239 (454)
T ss_dssp             GG---------GTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTS
T ss_pred             cc---------ccccccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECCCC
Confidence            00         0000000000         000123589999999865           456788899999999999976


Q ss_pred             CEEEEEeCCCC
Q 015463          262 SFFVFCEGSVG  272 (406)
Q Consensus       262 ~~l~v~~t~~~  272 (406)
                       .||+++....
T Consensus       240 -~L~~~d~g~~  249 (454)
T 1cru_A          240 -KLLQSEQGPN  249 (454)
T ss_dssp             -CEEEEEECSS
T ss_pred             -CEEEEecCCC
Confidence             5889987543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.15  E-value=3.5e-09  Score=101.60  Aligned_cols=154  Identities=17%  Similarity=0.179  Sum_probs=103.3

Q ss_pred             CcceEEEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccc-cCCcccccccceEEcCC----CCEEEEeCCCchhhhccc
Q 015463          131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATE-AEGVPLRFTNDLDIDDE----GNVYFTDSSTNYQRRQMQ  205 (406)
Q Consensus       131 ~~p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~-~~~~~~~~~~~l~~d~d----G~ly~t~~~~~~~~~~~~  205 (406)
                      ..|.+|++++ +|+|||++..+.|++++  +++.+.+... ........+++|+++++    |.||++++...       
T Consensus        31 ~~P~~ia~~p-dG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~-------  100 (352)
T 2ism_A           31 EVPWALAFLP-DGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAE-------  100 (352)
T ss_dssp             SCEEEEEECT-TSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECT-------
T ss_pred             CCceEEEEcC-CCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCC-------
Confidence            5699999999 89999999888899998  3444433221 11112457899999997    89999974200       


Q ss_pred             cccccccccccCCCCCCCcccCCCCeEEEEeCCCCe---EEEecc-------cCCCcceEEEecCCCEEEEEeC------
Q 015463          206 KENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQ---TTVLLR-------NLQFPNGLSLSKDKSFFVFCEG------  269 (406)
Q Consensus       206 ~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~---~~~~~~-------~~~~~ngi~l~~d~~~l~v~~t------  269 (406)
                                          ....++|++++.++++   .+.+..       ....++++++++|+ .||++..      
T Consensus       101 --------------------~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G~~~~~~  159 (352)
T 2ism_A          101 --------------------GGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTGEVYERE  159 (352)
T ss_dssp             --------------------TSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECCCTTCGG
T ss_pred             --------------------CCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEECCCCCCc
Confidence                                0001578888876542   223322       23467899999999 5888852      


Q ss_pred             -------CCCeEEEEEeeCCCC----------cceeeeecCCCCCCceEECC-CCCEEEEEccC
Q 015463          270 -------SVGRLHKYWLIGEKA----------GNLEAFAILPGYPDNVRTNE-KGEFWVAIHCR  315 (406)
Q Consensus       270 -------~~~~i~~~~~~g~~~----------~~~~~~~~l~g~pd~i~~d~-~G~lwv~~~~~  315 (406)
                             ..++|+|++.+|.-.          ...+++......|.++++|+ +|+||++....
T Consensus       160 ~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~  223 (352)
T 2ism_A          160 LAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGP  223 (352)
T ss_dssp             GGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC
T ss_pred             cccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCC
Confidence                   136899999876210          13345553223489999999 89999998754

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.13  E-value=2.3e-08  Score=95.90  Aligned_cols=191  Identities=13%  Similarity=0.101  Sum_probs=113.7

Q ss_pred             cccCcceEEEcCCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC
Q 015463           67 QIQGPESMAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (406)
Q Consensus        67 ~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g  143 (406)
                      ....|..++++++|+.+|++..+ .|..|+.+   +........                     ..+.|..+++++ +|
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~---------------------~~g~~~~~~~sp-dg   94 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHP---------------------IGGHPRANDADT-NT   94 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEE---------------------CCSSGGGGCTTS-CC
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEee---------------------cCCCCccEEECC-CC
Confidence            34579999999999988888776 78777642   222211100                     012356677888 67


Q ss_pred             c-EE--EEe-------------CCCcEEEEeCC-CCeEE-EcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhcc
Q 015463          144 D-LY--IAD-------------AYFGLMKVGPE-GGLAT-SLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQM  204 (406)
Q Consensus       144 ~-L~--Vad-------------~~~gl~~~d~~-~~~~~-~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~  204 (406)
                      + ||  +++             ..+.+..++.+ .++.. .+... .......+.++++++||+ +|+++..        
T Consensus        95 ~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~spdG~~l~~~~~~--------  165 (365)
T 1jof_A           95 RAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNY-EYQENTGIHGMVFDPTETYLYSADLT--------  165 (365)
T ss_dssp             EEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEE-ECCTTCCEEEEEECTTSSEEEEEETT--------
T ss_pred             CEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeE-EeCCCCcceEEEECCCCCEEEEEcCC--------
Confidence            6 34  332             22335555543 23332 22110 000124578899999996 7777642        


Q ss_pred             ccccccccccccCCCCCCCcccCCCCeEEEEeCC-CCeEEEec--c---cCCCcceEEEecCCCEEEEEeCCCCeEEEEE
Q 015463          205 QKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPT-TKQTTVLL--R---NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYW  278 (406)
Q Consensus       205 ~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~-t~~~~~~~--~---~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~  278 (406)
                                              .+.|..|+.+ +++.+.+.  .   ....|.+++++||++.+|++....+.|..|+
T Consensus       166 ------------------------~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~  221 (365)
T 1jof_A          166 ------------------------ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYV  221 (365)
T ss_dssp             ------------------------TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             ------------------------CCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEE
Confidence                                    2568888876 67654331  1   1346788999999999999887667888877


Q ss_pred             eeCCCCccee----eeecCC----C---------CCCceE-ECCCCC-EEEEEcc
Q 015463          279 LIGEKAGNLE----AFAILP----G---------YPDNVR-TNEKGE-FWVAIHC  314 (406)
Q Consensus       279 ~~g~~~~~~~----~~~~l~----g---------~pd~i~-~d~~G~-lwv~~~~  314 (406)
                      .+. ..+...    .+..++    |         .|.+++ +++||+ +|++...
T Consensus       222 ~~~-~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~  275 (365)
T 1jof_A          222 IDP-ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA  275 (365)
T ss_dssp             ECT-TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred             EeC-CCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC
Confidence            652 122211    122222    1         356788 999998 6776543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.12  E-value=3.5e-09  Score=99.30  Aligned_cols=184  Identities=8%  Similarity=-0.029  Sum_probs=121.5

Q ss_pred             cCcceEEEcCCCCeeEEEecC---CEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC
Q 015463           69 QGPESMAFDPLGRGPYTGVAD---GRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~~---g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g  143 (406)
                      ..|.+|+++++|+ +|+....   .+|++++..  .++.+....                     ....+.|++... ++
T Consensus        72 ~~p~gia~~~dG~-l~vad~~~~~~~v~~~d~~~g~~~~~~~~~---------------------~~~~~~g~~~~~-~~  128 (306)
T 2p4o_A           72 GKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGTVETLLTLP---------------------DAIFLNGITPLS-DT  128 (306)
T ss_dssp             SEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSCEEEEEECT---------------------TCSCEEEEEESS-SS
T ss_pred             CCceeEEEcCCCc-EEEEeccCCcceEEEEcCCCCeEEEEEeCC---------------------CccccCcccccC-CC
Confidence            3689999999999 7776532   368998754  444443221                     123467888776 78


Q ss_pred             cEEEEeCC-CcEEEEeCCCCeEEEc--ccc----cCCcccccccceEEcCCC-CEEEEeCCCchhhhccccccccccccc
Q 015463          144 DLYIADAY-FGLMKVGPEGGLATSL--ATE----AEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRQMQKENIPLQLCS  215 (406)
Q Consensus       144 ~L~Vad~~-~gl~~~d~~~~~~~~l--~~~----~~~~~~~~~~~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~~  215 (406)
                      ++|+++.. +.|+++|+.+++.+..  ...    .....+..+++|  +++| .+|++++.                   
T Consensus       129 ~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~-------------------  187 (306)
T 2p4o_A          129 QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE-------------------  187 (306)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT-------------------
T ss_pred             cEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC-------------------
Confidence            89999964 6799999987533221  110    111234578888  4555 79999864                   


Q ss_pred             cCCCCCCCcccCCCCeEEEEeCCC-Ce---EEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee
Q 015463          216 SLNDPSPIKITKDTGRVLKYDPTT-KQ---TTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA  291 (406)
Q Consensus       216 e~~~~~~~~~~~~~g~l~~~d~~t-~~---~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~  291 (406)
                                   .++|++|+.+. ++   .+.+. .+..|.|+++++||+ +|+++...++|.+++.+|    +.....
T Consensus       188 -------------~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~-l~va~~~~~~V~~~~~~G----~~~~~~  248 (306)
T 2p4o_A          188 -------------KMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGN-LYGATHIYNSVVRIAPDR----STTIIA  248 (306)
T ss_dssp             -------------TTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCC-EEEECBTTCCEEEECTTC----CEEEEE
T ss_pred             -------------CCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCC-EEEEeCCCCeEEEECCCC----CEEEEe
Confidence                         36799998764 32   22222 235799999999995 799988889999998653    222221


Q ss_pred             --cCC-CCCCceEEC---CCC-CEEEEEccC
Q 015463          292 --ILP-GYPDNVRTN---EKG-EFWVAIHCR  315 (406)
Q Consensus       292 --~l~-g~pd~i~~d---~~G-~lwv~~~~~  315 (406)
                        ..+ ..|.+++++   +++ .|||+...+
T Consensus       249 ~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          249 QAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             CGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             ecccccCCceEEEEecccCCCCEEEEECCCC
Confidence              222 358899997   674 599998754

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.11  E-value=7.1e-08  Score=90.30  Aligned_cols=189  Identities=10%  Similarity=0.088  Sum_probs=119.6

Q ss_pred             CcceEEEcCCCCeeEEEec-CCEEEEEeC---CceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcE
Q 015463           70 GPESMAFDPLGRGPYTGVA-DGRILFWDG---LKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL  145 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~-~g~I~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L  145 (406)
                      .|.+++++++|+.+|++.. ++.|..|+.   ..........                     ....|.++++++++..|
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~---------------------~~~~~~~~~~s~dg~~l  143 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE---------------------GLDGCHSANISPDNRTL  143 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC---------------------CCTTBCCCEECTTSSEE
T ss_pred             CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc---------------------CCCCceEEEECCCCCEE
Confidence            7899999999997777665 777888876   2111111110                     12347788999943458


Q ss_pred             EEEe-CCCcEEEEeCCC-CeEEEcc--cccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCCC
Q 015463          146 YIAD-AYFGLMKVGPEG-GLATSLA--TEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDP  220 (406)
Q Consensus       146 ~Vad-~~~gl~~~d~~~-~~~~~l~--~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~  220 (406)
                      |+++ ..+.|..++..+ +++....  .. .......+.+++++++|+ +|+++..                        
T Consensus       144 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~pdg~~l~~~~~~------------------------  198 (343)
T 1ri6_A          144 WVPALKQDRICLFTVSDDGHLVAQDPAEV-TTVEGAGPRHMVFHPNEQYAYCVNEL------------------------  198 (343)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEEE-ECSTTCCEEEEEECTTSSEEEEEETT------------------------
T ss_pred             EEecCCCCEEEEEEecCCCceeeeccccc-ccCCCCCcceEEECCCCCEEEEEeCC------------------------
Confidence            8887 446788888876 6554322  11 011123577899999997 7777632                        


Q ss_pred             CCCcccCCCCeEEEEeC--CCCeEEEe--cc----c---CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceee
Q 015463          221 SPIKITKDTGRVLKYDP--TTKQTTVL--LR----N---LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEA  289 (406)
Q Consensus       221 ~~~~~~~~~g~l~~~d~--~t~~~~~~--~~----~---~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~  289 (406)
                              .+.+..|+.  .+++.+..  ..    +   ...+.++++++|++.+|++....+.|..|+++.. .+..+.
T Consensus       199 --------~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~-~~~~~~  269 (343)
T 1ri6_A          199 --------NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSED-GSVLSK  269 (343)
T ss_dssp             --------TTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-SCCEEE
T ss_pred             --------CCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCC-CCceEE
Confidence                    256777776  34543322  11    1   1234479999999999988877789999998621 122222


Q ss_pred             ee--cCCCCCCceEECCCCC-EEEEEc
Q 015463          290 FA--ILPGYPDNVRTNEKGE-FWVAIH  313 (406)
Q Consensus       290 ~~--~l~g~pd~i~~d~~G~-lwv~~~  313 (406)
                      ..  ...+.|.+++++++|+ +|++..
T Consensus       270 ~~~~~~~~~~~~~~~s~dg~~l~~~~~  296 (343)
T 1ri6_A          270 EGFQPTETQPRGFNVDHSGKYLIAAGQ  296 (343)
T ss_dssp             EEEEECSSSCCCEEECTTSSEEEEECT
T ss_pred             eeeecCCCccceEEECCCCCEEEEecC
Confidence            22  2334588999999998 566553

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.11  E-value=1.1e-08  Score=98.12  Aligned_cols=193  Identities=14%  Similarity=0.072  Sum_probs=118.5

Q ss_pred             cccCcceEEEcCC---CCeeEEEec----C----CEEEEEeCC-c------eeEEEeecCCCccccCCCCCcccccccCC
Q 015463           67 QIQGPESMAFDPL---GRGPYTGVA----D----GRILFWDGL-K------WTDFAFTSNNRSELCNPKPIATSYLKNEH  128 (406)
Q Consensus        67 ~~~gpe~i~~d~~---g~~ly~g~~----~----g~I~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (406)
                      ...+|.+|+++++   +..+|+...    +    .+|+|++.+ .      .+.+....+.                  .
T Consensus        71 g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~------------------~  132 (354)
T 3a9g_A           71 GEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPG------------------A  132 (354)
T ss_dssp             TTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEEC------------------C
T ss_pred             CCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCC------------------C
Confidence            3468999999987   444887654    2    689999754 2      1122111000                  0


Q ss_pred             cCCcceEEEEeCCCCcEEEEeCC--------------CcEEEEeCCCC--------eEEEcccccCCcccccccceEEcC
Q 015463          129 ICGRPLGLRFDKKTGDLYIADAY--------------FGLMKVGPEGG--------LATSLATEAEGVPLRFTNDLDIDD  186 (406)
Q Consensus       129 ~~~~p~gi~~d~~~g~L~Vad~~--------------~gl~~~d~~~~--------~~~~l~~~~~~~~~~~~~~l~~d~  186 (406)
                      ....+.+|+|++ +|.|||++..              ..|+|+++++.        ..+.+..     -+..|+++++|+
T Consensus       133 ~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~-----G~rnp~Gla~d~  206 (354)
T 3a9g_A          133 YIHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSY-----GHRNPQGIDWHR  206 (354)
T ss_dssp             SSCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEE-----CCSCCCEEEECT
T ss_pred             CCcCCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEE-----ccCCcceEEEeC
Confidence            122367899999 8999998632              35999998764        1111111     245789999999


Q ss_pred             -CCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCC--------------CC---eEEEeccc
Q 015463          187 -EGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPT--------------TK---QTTVLLRN  248 (406)
Q Consensus       187 -dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~--------------t~---~~~~~~~~  248 (406)
                       +|+||+++......                             ..|.++.+.              .+   -...+...
T Consensus       207 ~~g~l~v~d~g~~~~-----------------------------dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~  257 (354)
T 3a9g_A          207 ASGVMVATEHGPVGH-----------------------------DEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSE  257 (354)
T ss_dssp             TTCCEEEEECCSSSC-----------------------------CEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTC
T ss_pred             CCCCEEEEecCCCCC-----------------------------cEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCC
Confidence             89999998652210                             011111110              00   00111122


Q ss_pred             CCCcceEEEe-------cCCCEEEEEeCCCCeEEEEEeeCC-CCcceeeee-cCCCCCCceEECCCCCEEEEEc
Q 015463          249 LQFPNGLSLS-------KDKSFFVFCEGSVGRLHKYWLIGE-KAGNLEAFA-ILPGYPDNVRTNEKGEFWVAIH  313 (406)
Q Consensus       249 ~~~~ngi~l~-------~d~~~l~v~~t~~~~i~~~~~~g~-~~~~~~~~~-~l~g~pd~i~~d~~G~lwv~~~  313 (406)
                      ...|.|+++.       .++ .+|+++...++|+++.+++. +....+.+. ...+.|.++++++||.|||++.
T Consensus       258 ~~ap~G~~~y~g~~fp~~~G-~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          258 TWAPSGASFVHGDMFPGLRG-WLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             CCCEEEEEECCSSSCGGGTT-EEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             CcCCcceEEECCCCCcccCC-cEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            3457888884       345 68899998899999998753 122223333 3346789999999999999985

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.06  E-value=5.7e-08  Score=90.74  Aligned_cols=186  Identities=13%  Similarity=0.014  Sum_probs=113.5

Q ss_pred             CcceEEEcCCCCeeEEE-ecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463           70 GPESMAFDPLGRGPYTG-VADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g-~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va  148 (406)
                      .|.+++++++|+.+|+. ..++.|..++....+........               ........|.++++++++..||++
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~s~dg~~l~~~   99 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLS---------------TPEERVKSLFGAALSPDGKTLAIY   99 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECC---------------BTTEEEECTTCEEECTTSSEEEEE
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcC---------------CcccccccccceEECCCCCEEEEE
Confidence            48999999999766665 45689999997621111111000               000001257889999843478888


Q ss_pred             e------------CCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccc
Q 015463          149 D------------AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCS  215 (406)
Q Consensus       149 d------------~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~  215 (406)
                      +            ....|..+|.++++.......  +   ..+.++++++||+ +|+++                     
T Consensus       100 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~---~~~~~~~~s~dg~~l~~~~---------------------  153 (337)
T 1pby_B          100 ESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA--P---RQITMLAWARDGSKLYGLG---------------------  153 (337)
T ss_dssp             EEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC--C---SSCCCEEECTTSSCEEEES---------------------
T ss_pred             ecccccccccccccCceEEEEECCCCcEEEEEeC--C---CCcceeEECCCCCEEEEeC---------------------
Confidence            5            346799999988765432221  1   2477899999996 77773                     


Q ss_pred             cCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCC-----------------------
Q 015463          216 SLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVG-----------------------  272 (406)
Q Consensus       216 e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~-----------------------  272 (406)
                                    +.++.+|.++++..........+..+++++|++.+|++....+                       
T Consensus       154 --------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (337)
T 1pby_B          154 --------------RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRT  219 (337)
T ss_dssp             --------------SSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEE
T ss_pred             --------------CeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeecccccccccccccccc
Confidence                          4699999988876544333222334577899888877654433                       


Q ss_pred             eEEEEEeeCCCCcceeeeecCCCCCCceEECCCCC-EEEE
Q 015463          273 RLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE-FWVA  311 (406)
Q Consensus       273 ~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~-lwv~  311 (406)
                      .|+.+++...+.. ...+......|.+++++++|+ +|++
T Consensus       220 ~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~  258 (337)
T 1pby_B          220 GLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA  258 (337)
T ss_dssp             EEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred             ceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe
Confidence            3466665432211 111112233466789999997 5666

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.06  E-value=2.1e-08  Score=91.87  Aligned_cols=143  Identities=14%  Similarity=0.122  Sum_probs=96.2

Q ss_pred             cceEEEEeCCCCcEEEEeCC---CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccc
Q 015463          132 RPLGLRFDKKTGDLYIADAY---FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKEN  208 (406)
Q Consensus       132 ~p~gi~~d~~~g~L~Vad~~---~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~  208 (406)
                      .|.||++++ ++.||+++..   ..|..+|++++++..-... +.  ..+..+++.+ ++.+|+++..            
T Consensus        22 f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l-~~--~~fgeGi~~~-g~~lyv~t~~------------   84 (266)
T 2iwa_A           22 FTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKM-DD--SYFGEGLTLL-NEKLYQVVWL------------   84 (266)
T ss_dssp             CEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEEC-CT--TCCEEEEEEE-TTEEEEEETT------------
T ss_pred             CcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEec-CC--CcceEEEEEe-CCEEEEEEec------------
Confidence            478999998 6899999853   5799999999876542211 11  2345567776 4589999853            


Q ss_pred             ccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCccee
Q 015463          209 IPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLE  288 (406)
Q Consensus       209 ~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~  288 (406)
                                          .+.++.||+++.+...-...- .+.|..+++|++.+|+++ ..+.|+.++.+..+.-. .
T Consensus        85 --------------------~~~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~-~  141 (266)
T 2iwa_A           85 --------------------KNIGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSD-GTSILYEIDPHTFKLIK-K  141 (266)
T ss_dssp             --------------------CSEEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEEC-SSSEEEEECTTTCCEEE-E
T ss_pred             --------------------CCEEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEEC-CCCeEEEEECCCCcEEE-E
Confidence                                378999999988654333211 467788889999999998 57899999865322111 1


Q ss_pred             eeecCC----CCCCceEECCCCCEEEEEccC
Q 015463          289 AFAILP----GYPDNVRTNEKGEFWVAIHCR  315 (406)
Q Consensus       289 ~~~~l~----g~pd~i~~d~~G~lwv~~~~~  315 (406)
                      +-....    ..|+.+.+. +|.+|++....
T Consensus       142 I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~  171 (266)
T 2iwa_A          142 HNVKYNGHRVIRLNELEYI-NGEVWANIWQT  171 (266)
T ss_dssp             EECEETTEECCCEEEEEEE-TTEEEEEETTS
T ss_pred             EEECCCCcccccceeEEEE-CCEEEEecCCC
Confidence            111111    135667766 78999887543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.05  E-value=4.4e-08  Score=89.25  Aligned_cols=190  Identities=11%  Similarity=0.132  Sum_probs=123.2

Q ss_pred             CcccCcceEEEcCCCCeeEE-EecCCEEEEEeCC-cee-EEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCC
Q 015463           66 NQIQGPESMAFDPLGRGPYT-GVADGRILFWDGL-KWT-DFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT  142 (406)
Q Consensus        66 ~~~~gpe~i~~d~~g~~ly~-g~~~g~I~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~  142 (406)
                      +-...+.+++++++++.||+ ...+++|++++.. .+. .+..                      ..+..+-||+++. +
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l----------------------~g~~D~EGIa~~~-~   80 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPL----------------------DFVKDLETIEYIG-D   80 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEEC----------------------SSCSSEEEEEECS-T
T ss_pred             CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEec----------------------CCCCChHHeEEeC-C
Confidence            33356899999988777886 6667899999987 222 2211                      1135688999997 8


Q ss_pred             CcEEEEeCC-CcEEEEeCCCC-eEEEcccc---c-CCcccccccceEEcCCC-CEEEEeCCCchhhhccccccccccccc
Q 015463          143 GDLYIADAY-FGLMKVGPEGG-LATSLATE---A-EGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRQMQKENIPLQLCS  215 (406)
Q Consensus       143 g~L~Vad~~-~gl~~~d~~~~-~~~~l~~~---~-~~~~~~~~~~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~~  215 (406)
                      +.+||++.. ++++.++.... .+..+...   . .........+|+.|+++ ++|++...                   
T Consensus        81 g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~-------------------  141 (255)
T 3qqz_A           81 NQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEK-------------------  141 (255)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEES-------------------
T ss_pred             CEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECc-------------------
Confidence            889999765 56777764322 22211111   1 11223346789999877 79997632                   


Q ss_pred             cCCCCCCCcccCCCCeEEEEe--CCCCeEEEec-------ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcc
Q 015463          216 SLNDPSPIKITKDTGRVLKYD--PTTKQTTVLL-------RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGN  286 (406)
Q Consensus       216 e~~~~~~~~~~~~~g~l~~~d--~~t~~~~~~~-------~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~  286 (406)
                                  ...+|+.++  +.+..+....       ..+..+.+++++|....+|+......+|..++.+|.    
T Consensus       142 ------------~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~----  205 (255)
T 3qqz_A          142 ------------NPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE----  205 (255)
T ss_dssp             ------------SSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC----
T ss_pred             ------------CCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC----
Confidence                        123588887  2222333331       123457899999998889999888899999987753    


Q ss_pred             eeeeecCC-C---------CCCceEECCCCCEEEEEc
Q 015463          287 LEAFAILP-G---------YPDNVRTNEKGEFWVAIH  313 (406)
Q Consensus       287 ~~~~~~l~-g---------~pd~i~~d~~G~lwv~~~  313 (406)
                      ...+..+. |         .|.||++|++|++||+.-
T Consensus       206 ~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE  242 (255)
T 3qqz_A          206 VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSE  242 (255)
T ss_dssp             EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEET
T ss_pred             EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcC
Confidence            22222222 1         478999999999999963

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.05  E-value=4e-08  Score=93.49  Aligned_cols=154  Identities=16%  Similarity=0.156  Sum_probs=104.2

Q ss_pred             CCcceEEEEeCCCCcEEEEeC-CCcEEEEeCCCCeEEEcccc--cCCcccccccceEEcC----CCCEEEEeCCCchhhh
Q 015463          130 CGRPLGLRFDKKTGDLYIADA-YFGLMKVGPEGGLATSLATE--AEGVPLRFTNDLDIDD----EGNVYFTDSSTNYQRR  202 (406)
Q Consensus       130 ~~~p~gi~~d~~~g~L~Vad~-~~gl~~~d~~~~~~~~l~~~--~~~~~~~~~~~l~~d~----dG~ly~t~~~~~~~~~  202 (406)
                      ...|.+|++.+ +|+|||+.. .+.|+++++++++.+.+...  ........+.+|++++    +|.||++.+.      
T Consensus        31 L~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~------  103 (347)
T 3das_A           31 LNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS------  103 (347)
T ss_dssp             CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC------
T ss_pred             CCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec------
Confidence            35699999999 899999998 56799999877765543221  1112245678999998    4899997532      


Q ss_pred             ccccccccccccccCCCCCCCcccCCCCeEEEEeCCCC--------eEEEecc-----cCCCcceEEEecCCCEEEEEeC
Q 015463          203 QMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTK--------QTTVLLR-----NLQFPNGLSLSKDKSFFVFCEG  269 (406)
Q Consensus       203 ~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~--------~~~~~~~-----~~~~~ngi~l~~d~~~l~v~~t  269 (406)
                                              ...++|.||....+        +.+++..     ..++.+.|++.+|+. ||++.-
T Consensus       104 ------------------------~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~G  158 (347)
T 3das_A          104 ------------------------ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTG  158 (347)
T ss_dssp             ------------------------SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECB
T ss_pred             ------------------------CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEEC
Confidence                                    11357888866541        2333332     234556799999995 888731


Q ss_pred             -------------CCCeEEEEEeeCCCCc-----ceeeeecCCCCCCceEECCCCCEEEEEccC
Q 015463          270 -------------SVGRLHKYWLIGEKAG-----NLEAFAILPGYPDNVRTNEKGEFWVAIHCR  315 (406)
Q Consensus       270 -------------~~~~i~~~~~~g~~~~-----~~~~~~~l~g~pd~i~~d~~G~lwv~~~~~  315 (406)
                                   ..++|+|++.+|.-..     ..+++......|.++++|++|.||++.+..
T Consensus       159 d~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~  222 (347)
T 3das_A          159 ESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQ  222 (347)
T ss_dssp             CTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEECCS
T ss_pred             CCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEecCC
Confidence                         2578999998763110     235665422348999999999999998754

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.05  E-value=1.9e-07  Score=89.50  Aligned_cols=173  Identities=15%  Similarity=0.181  Sum_probs=117.0

Q ss_pred             eeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-EEEEeC-CCcEEEEeC
Q 015463           82 GPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYIADA-YFGLMKVGP  159 (406)
Q Consensus        82 ~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-L~Vad~-~~gl~~~d~  159 (406)
                      ++.++..++.|..|+....+......                     ....+.++++++ +|+ |+++.. .+.|..+|.
T Consensus         4 l~vs~~~d~~v~v~d~~~~~~~~~~~---------------------~~~~~~~~~~s~-dg~~l~~~~~~d~~i~v~d~   61 (391)
T 1l0q_A            4 AYIANSESDNISVIDVTSNKVTATIP---------------------VGSNPMGAVISP-DGTKVYVANAHSNDVSIIDT   61 (391)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEE---------------------CSSSEEEEEECT-TSSEEEEEEGGGTEEEEEET
T ss_pred             EEEEcCCCCEEEEEECCCCeEEEEee---------------------cCCCcceEEECC-CCCEEEEECCCCCeEEEEEC
Confidence            35567788999999976222111110                     023478899999 565 667663 467999999


Q ss_pred             CCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCC
Q 015463          160 EGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPT  238 (406)
Q Consensus       160 ~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~  238 (406)
                      ++++.......  +   ..+.+++++++|+ +|++...                                .+.|..||.+
T Consensus        62 ~~~~~~~~~~~--~---~~v~~~~~spdg~~l~~~~~~--------------------------------~~~v~v~d~~  104 (391)
T 1l0q_A           62 ATNNVIATVPA--G---SSPQGVAVSPDGKQVYVTNMA--------------------------------SSTLSVIDTT  104 (391)
T ss_dssp             TTTEEEEEEEC--S---SSEEEEEECTTSSEEEEEETT--------------------------------TTEEEEEETT
T ss_pred             CCCeEEEEEEC--C---CCccceEECCCCCEEEEEECC--------------------------------CCEEEEEECC
Confidence            88865433221  1   1578899999996 6677532                                3779999999


Q ss_pred             CCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCCCC-EEEEEccCC
Q 015463          239 TKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE-FWVAIHCRR  316 (406)
Q Consensus       239 t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~-lwv~~~~~~  316 (406)
                      +++..........+.++++++|++.++++....+.|..+++...   +..........|..++++++|+ +|++.....
T Consensus       105 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~  180 (391)
T 1l0q_A          105 SNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK---AVINTVSVGRSPKGIAVTPDGTKVYVANFDSM  180 (391)
T ss_dssp             TTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEECCSSEEEEEECTTSSEEEEEETTTT
T ss_pred             CCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEEecCCCcceEEECCCCCEEEEEeCCCC
Confidence            98876665555567899999999999888887889999987532   2111112233467788899987 667655443

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.05  E-value=1.2e-07  Score=92.41  Aligned_cols=254  Identities=11%  Similarity=0.091  Sum_probs=154.2

Q ss_pred             CcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEe
Q 015463           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad  149 (406)
                      ...++++.++|+.++++..++.|..|+.+..+......                    .....+.++++++++..++++.
T Consensus       171 ~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~l~~~~  230 (433)
T 3bws_A          171 FVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVD--------------------LTGKWSKILLYDPIRDLVYCSN  230 (433)
T ss_dssp             EEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEE--------------------CSSSSEEEEEEETTTTEEEEEE
T ss_pred             ceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEc--------------------CCCCCeeEEEEcCCCCEEEEEe
Confidence            34568888889877778888999999976211111110                    1124578899998444566777


Q ss_pred             CC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463          150 AY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK  227 (406)
Q Consensus       150 ~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  227 (406)
                      .. +.|..+|.++++.......     ...+.+++++++|+ +|++......              +           ..
T Consensus       231 ~~~~~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~g~~l~~~~~~~~~--------------~-----------~~  280 (433)
T 3bws_A          231 WISEDISVIDRKTKLEIRKTDK-----IGLPRGLLLSKDGKELYIAQFSASN--------------Q-----------ES  280 (433)
T ss_dssp             TTTTEEEEEETTTTEEEEECCC-----CSEEEEEEECTTSSEEEEEEEESCT--------------T-----------CS
T ss_pred             cCCCcEEEEECCCCcEEEEecC-----CCCceEEEEcCCCCEEEEEECCCCc--------------c-----------cc
Confidence            43 6799999988765332211     12378899999995 5555421000              0           01


Q ss_pred             CCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCCCC
Q 015463          228 DTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE  307 (406)
Q Consensus       228 ~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~  307 (406)
                      .+|.|+.||..+++..........+.++++++|++.+|++....+.|..+++.+.   +..........+..++++++|+
T Consensus       281 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~---~~~~~~~~~~~~~~~~~s~dg~  357 (433)
T 3bws_A          281 GGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK---KVQKSIPVFDKPNTIALSPDGK  357 (433)
T ss_dssp             CCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT---EEEEEEECSSSEEEEEECTTSS
T ss_pred             CCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC---cEEEEecCCCCCCeEEEcCCCC
Confidence            3578999999888765544333466789999999999999888889999997632   2111112334467889999998


Q ss_pred             -EEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECC-CCCEEEEEECCCCCeeeceeEEEE
Q 015463          308 -FWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSP-EGKILQVLEDSKGKVVKAISEVEE  385 (406)
Q Consensus       308 -lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~g~~~~~~s~~~~  385 (406)
                       +|++........          ...+              ..+...+.+..+|. +++.+..+.. ..    .+..+..
T Consensus       358 ~l~~~~~~~~~~~----------~~~~--------------~~g~~dg~v~~~d~~~~~~~~~~~~-~~----~~~~~~~  408 (433)
T 3bws_A          358 YLYVSCRGPNHPT----------EGYL--------------KKGLVLGKVYVIDTTTDTVKEFWEA-GN----QPTGLDV  408 (433)
T ss_dssp             EEEEEECCCCCTT----------TCTT--------------SCCSSCCEEEEEETTTTEEEEEEEC-SS----SEEEEEE
T ss_pred             EEEEEecCCCccc----------cccc--------------cccccceEEEEEECCCCcEEEEecC-CC----CCceEEE
Confidence             677664331110          0000              01122334666665 4666666543 11    2333433


Q ss_pred             -eC-CEEEEecCCCCeEEEEeC
Q 015463          386 -KD-GKLWMGSVLMPFVAVYDL  405 (406)
Q Consensus       386 -~~-g~Ly~Gs~~~~~i~~~~~  405 (406)
                       .+ ..|++++...+.|.++++
T Consensus       409 s~dg~~l~~~~~~d~~i~v~~~  430 (433)
T 3bws_A          409 SPDNRYLVISDFLDHQIRVYRR  430 (433)
T ss_dssp             CTTSCEEEEEETTTTEEEEEEE
T ss_pred             cCCCCEEEEEECCCCeEEEEEe
Confidence             23 467777765777877765

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.00  E-value=1.6e-07  Score=95.41  Aligned_cols=188  Identities=14%  Similarity=0.090  Sum_probs=121.3

Q ss_pred             cceEEEcCCCCeeEEEecCCEEEEEeC--CceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeC----CCCc
Q 015463           71 PESMAFDPLGRGPYTGVADGRILFWDG--LKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK----KTGD  144 (406)
Q Consensus        71 pe~i~~d~~g~~ly~g~~~g~I~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~----~~g~  144 (406)
                      |.+++++++|+.+|++..++.|..|+.  ...+.+....                     .+..|.++++++    ++..
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~---------------------~g~~p~~va~sp~~~~dg~~  239 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK---------------------IGIEARSVESSKFKGYEDRY  239 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE---------------------CCSEEEEEEECCSTTCTTTE
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe---------------------cCCCcceEEeCCCcCCCCCE
Confidence            789999999999999999999999998  4322222111                     134588999998    7778


Q ss_pred             EEEEeC-CCcEEEEeCCCCeEEEcccc----cCC---cccccccceEEcCCCCEEEEeCCCchhhhcccccccccccccc
Q 015463          145 LYIADA-YFGLMKVGPEGGLATSLATE----AEG---VPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSS  216 (406)
Q Consensus       145 L~Vad~-~~gl~~~d~~~~~~~~l~~~----~~~---~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e  216 (406)
                      ||++.. ...|..+|..+++.......    ..+   .+...+..++++++|..++..                      
T Consensus       240 l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs----------------------  297 (543)
T 1nir_A          240 TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN----------------------  297 (543)
T ss_dssp             EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE----------------------
T ss_pred             EEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEE----------------------
Confidence            999985 46788999887765332211    011   012246678888877544433                      


Q ss_pred             CCCCCCCcccCCCCeEEEEeCCCCeEEE--ecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCC
Q 015463          217 LNDPSPIKITKDTGRVLKYDPTTKQTTV--LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILP  294 (406)
Q Consensus       217 ~~~~~~~~~~~~~g~l~~~d~~t~~~~~--~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~  294 (406)
                               ...+|.|..+|..+.+...  ....-.++.+++++||++++|++....+.|..++.+.   ++........
T Consensus       298 ---------~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t---g~l~~~i~~g  365 (543)
T 1nir_A          298 ---------VKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD---RRLSALVDVG  365 (543)
T ss_dssp             ---------ETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT---TEEEEEEECS
T ss_pred             ---------ECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCC---CeEEEeeccC
Confidence                     1225789999987653211  1223457889999999999999887778999988653   2211111211


Q ss_pred             CC--C-CceE-ECCC-CCEEEEEc
Q 015463          295 GY--P-DNVR-TNEK-GEFWVAIH  313 (406)
Q Consensus       295 g~--p-d~i~-~d~~-G~lwv~~~  313 (406)
                      ..  | .+.. .+++ |.+|++..
T Consensus       366 ~~ph~g~g~~~~~p~~g~~~~s~~  389 (543)
T 1nir_A          366 KTPHPGRGANFVHPKYGPVWSTSH  389 (543)
T ss_dssp             SSBCCTTCEEEEETTTEEEEEEEB
T ss_pred             CCCCCCCCcccCCCCCccEEEecc
Confidence            11  2 2333 3555 77898875

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.97  E-value=7.1e-08  Score=87.57  Aligned_cols=153  Identities=17%  Similarity=0.180  Sum_probs=107.2

Q ss_pred             CcceEEEcCCCCeeEEEec-CCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463           70 GPESMAFDPLGRGPYTGVA-DGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va  148 (406)
                      ..|+++.+  |+.+|+.++ ++.++.+|.+..+.+....                  .   .+...|++.|  ++.||++
T Consensus        88 FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~~ti~------------------~---~~eG~glt~d--g~~L~~S  142 (262)
T 3nol_A           88 FGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQVRSFN------------------Y---DGEGWGLTHN--DQYLIMS  142 (262)
T ss_dssp             CEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEEEEEE------------------C---SSCCCCEEEC--SSCEEEC
T ss_pred             ceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEEEEEE------------------C---CCCceEEecC--CCEEEEE
Confidence            34778875  345888875 6889999987433332221                  0   1235677766  5789999


Q ss_pred             eCCCcEEEEeCCCCeEEE-cccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463          149 DAYFGLMKVGPEGGLATS-LATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK  227 (406)
Q Consensus       149 d~~~gl~~~d~~~~~~~~-l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  227 (406)
                      +....|..+|+++.++.. +.....+.+...+|.+... +|.||+..+.                               
T Consensus       143 dGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~-------------------------------  190 (262)
T 3nol_A          143 DGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQ-------------------------------  190 (262)
T ss_dssp             CSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT-------------------------------
T ss_pred             CCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEcc-------------------------------
Confidence            976789999999876533 2222345677778888876 8999998753                               


Q ss_pred             CCCeEEEEeCCCCeEEEecc--cC-----------CCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          228 DTGRVLKYDPTTKQTTVLLR--NL-----------QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       228 ~~g~l~~~d~~t~~~~~~~~--~~-----------~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                       .+.|.++|++++++....+  ++           .-+||||++++++.+||+.-.=.+++.+.+.
T Consensus       191 -~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev~~~  255 (262)
T 3nol_A          191 -TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEITLT  255 (262)
T ss_dssp             -SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred             -CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEEEEEe
Confidence             2579999999998765432  11           2469999999999999987544567666654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.97  E-value=7e-07  Score=84.91  Aligned_cols=198  Identities=15%  Similarity=0.124  Sum_probs=116.9

Q ss_pred             cCcceEEEcCCCCeeEEEe-cCCEEEEEeCC---ceeEEE---eecCCCccccCCCCCcccccccCCcCCcceEEEEeCC
Q 015463           69 QGPESMAFDPLGRGPYTGV-ADGRILFWDGL---KWTDFA---FTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK  141 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~-~~g~I~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~  141 (406)
                      ..|..+++  +|+.+|+.. .++.|..|+..   ....+.   .......  .          ........|.++++++ 
T Consensus       100 ~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~--~----------~~~~~~~~~~~~~~sp-  164 (361)
T 3scy_A          100 ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGP--D----------KERQTMPHLHCVRITP-  164 (361)
T ss_dssp             SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCS--C----------TTTCSSCCEEEEEECT-
T ss_pred             CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCC--C----------ccccCCCcceEEEECC-
Confidence            46778887  677677766 46778877753   111110   0000000  0          0001134468899999 


Q ss_pred             CCc-EEEEeCC-CcEEEE--eCCCC----e-EEEc--ccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccc
Q 015463          142 TGD-LYIADAY-FGLMKV--GPEGG----L-ATSL--ATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENI  209 (406)
Q Consensus       142 ~g~-L~Vad~~-~gl~~~--d~~~~----~-~~~l--~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~  209 (406)
                      +|+ ||+++.. +.+..+  +..++    + +...  ...........+.++++++||+ +|+++..             
T Consensus       165 dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-------------  231 (361)
T 3scy_A          165 DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI-------------  231 (361)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-------------
T ss_pred             CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC-------------
Confidence            665 8998865 445555  44443    2 2111  0000011123577899999996 7777632             


Q ss_pred             cccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec------ccCCCcceEEEecCCCEEEEEeCC-CCeEEEEEeeCC
Q 015463          210 PLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL------RNLQFPNGLSLSKDKSFFVFCEGS-VGRLHKYWLIGE  282 (406)
Q Consensus       210 ~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~------~~~~~~ngi~l~~d~~~l~v~~t~-~~~i~~~~~~g~  282 (406)
                                         .+.|..|+.++++.+.+.      .....+.+++++||++++|++... .+.|..|+++. 
T Consensus       232 -------------------~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~-  291 (361)
T 3scy_A          232 -------------------GGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDE-  291 (361)
T ss_dssp             -------------------TCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECT-
T ss_pred             -------------------CCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcC-
Confidence                               356888887777664432      122345689999999999999877 67888888752 


Q ss_pred             CCcceeeeec--CCCCCCceEECCCCC-EEEEEcc
Q 015463          283 KAGNLEAFAI--LPGYPDNVRTNEKGE-FWVAIHC  314 (406)
Q Consensus       283 ~~~~~~~~~~--l~g~pd~i~~d~~G~-lwv~~~~  314 (406)
                      ..+..+....  ....|.+++++++|+ +|++...
T Consensus       292 ~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~  326 (361)
T 3scy_A          292 TNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRD  326 (361)
T ss_dssp             TTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETT
T ss_pred             CCCcEEEeeEecCCCCCceEEECCCCCEEEEEECC
Confidence            1223222221  234689999999998 6776643

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.94  E-value=7.1e-08  Score=88.35  Aligned_cols=158  Identities=15%  Similarity=0.090  Sum_probs=111.7

Q ss_pred             cccCcceEEEcCCCCeeEEEec-CCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcE
Q 015463           67 QIQGPESMAFDPLGRGPYTGVA-DGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL  145 (406)
Q Consensus        67 ~~~gpe~i~~d~~g~~ly~g~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L  145 (406)
                      .-..+|+++.+  |+.+|+.+. ++.+..+|.+..+.+....                  ..  .+.+.|++.|  ++.|
T Consensus        64 ~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~------------------~g--~~~g~glt~D--g~~l  119 (266)
T 2iwa_A           64 DSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFT------------------HQ--MKDGWGLATD--GKIL  119 (266)
T ss_dssp             TTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEE------------------CC--SSSCCEEEEC--SSSE
T ss_pred             CCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEE------------------CC--CCCeEEEEEC--CCEE
Confidence            33466888886  344787765 6899999987433333221                  00  1234566655  5789


Q ss_pred             EEEeCCCcEEEEeCCCCeEEE-cccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCc
Q 015463          146 YIADAYFGLMKVGPEGGLATS-LATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIK  224 (406)
Q Consensus       146 ~Vad~~~gl~~~d~~~~~~~~-l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  224 (406)
                      |+++..+.|..+|+++.+... +.....+.+...+|.+... +|.+|++...                            
T Consensus       120 ~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~----------------------------  170 (266)
T 2iwa_A          120 YGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQ----------------------------  170 (266)
T ss_dssp             EEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT----------------------------
T ss_pred             EEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCC----------------------------
Confidence            999966789999999876433 3222334566678998888 7899998753                            


Q ss_pred             ccCCCCeEEEEeCCCCeEEEecc--cC------------CCcceEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463          225 ITKDTGRVLKYDPTTKQTTVLLR--NL------------QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  281 (406)
Q Consensus       225 ~~~~~g~l~~~d~~t~~~~~~~~--~~------------~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g  281 (406)
                          .+.|.++|++++++.....  ++            ..+|||+++++++.+||+.....+++.+++..
T Consensus       171 ----~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          171 ----TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             ----SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             ----CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence                3679999999998755432  22            35699999999999999998888999998763

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=98.93  E-value=2.1e-07  Score=89.31  Aligned_cols=191  Identities=14%  Similarity=0.090  Sum_probs=126.6

Q ss_pred             CcceEEEEeCCCCcEEEEeCCC----------------cEEEEeCCCC--eEE-Ecc--cccCCcccccccceEEc-C--
Q 015463          131 GRPLGLRFDKKTGDLYIADAYF----------------GLMKVGPEGG--LAT-SLA--TEAEGVPLRFTNDLDID-D--  186 (406)
Q Consensus       131 ~~p~gi~~d~~~g~L~Vad~~~----------------gl~~~d~~~~--~~~-~l~--~~~~~~~~~~~~~l~~d-~--  186 (406)
                      -.++++.+|+ .|+|||-|.+.                .|+.+|..++  ++. .+.  ... -.+..+.+++++| .  
T Consensus        87 vsV~~v~iD~-~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~-~~~~S~l~di~VD~~~~  164 (381)
T 3q6k_A           87 TSIYQPVIDD-CRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRL-VEKPTYFGGFAVDVANP  164 (381)
T ss_dssp             SCEEEEEECT-TCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGG-CCCGGGEEEEEEEESCT
T ss_pred             EEeeEEEEcC-CCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHh-cccCCccceEEEecccC
Confidence            4478999998 89999999761                3889999988  543 322  111 1234678999999 2  


Q ss_pred             -----CCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccC------------
Q 015463          187 -----EGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNL------------  249 (406)
Q Consensus       187 -----dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~------------  249 (406)
                           ++.+|++|+.                                .++|++||.++++...+.+..            
T Consensus       165 ~~~c~~~~aYItD~~--------------------------------~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~  212 (381)
T 3q6k_A          165 KGDCSETFVYITNFL--------------------------------RGALFIYDHKKQDSWNVTHPTFKAERPTKFDYG  212 (381)
T ss_dssp             TTTSCSEEEEEEETT--------------------------------TTEEEEEETTTTEEEEEECGGGSCCSCEEEEET
T ss_pred             CCCCCccEEEEEcCC--------------------------------CCcEEEEECCCCcEEEEccCCCccccCcceEEC
Confidence                 4689999964                                256999999888776654211            


Q ss_pred             -------CCcceEEEecC----CCEEEEEeCCCCeEEEEEee---CCC-CcceeeeecCCCCCCc--eEEC-CCCCEEEE
Q 015463          250 -------QFPNGLSLSKD----KSFFVFCEGSVGRLHKYWLI---GEK-AGNLEAFAILPGYPDN--VRTN-EKGEFWVA  311 (406)
Q Consensus       250 -------~~~ngi~l~~d----~~~l~v~~t~~~~i~~~~~~---g~~-~~~~~~~~~l~g~pd~--i~~d-~~G~lwv~  311 (406)
                             ....||+|+++    ++.||+.-..+.+++++..+   .+. ....+.+.+.....++  +++| .+|++|++
T Consensus       213 G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~  292 (381)
T 3q6k_A          213 GKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFA  292 (381)
T ss_dssp             TEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEE
T ss_pred             CEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEE
Confidence                   13468999998    89999999888899998743   221 2223333333212454  5676 88999999


Q ss_pred             EccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCC------CEEEEEECCCCCeeeceeEEEE
Q 015463          312 IHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEG------KILQVLEDSKGKVVKAISEVEE  385 (406)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g------~~~~~~~~~~g~~~~~~s~~~~  385 (406)
                      ....                                      ..|.++++++      +.-...+++ ..  ...+.+..
T Consensus       293 ~~~~--------------------------------------~aI~~w~~~~~~~~~~n~~~l~~d~-~l--~~pd~~~i  331 (381)
T 3q6k_A          293 EANT--------------------------------------KQVSCWNTQKMPLRMKNTDVVYTSS-RF--VFGTDISV  331 (381)
T ss_dssp             ESSS--------------------------------------SEEEEEETTSCSBCGGGEEEEEECT-TC--CSEEEEEE
T ss_pred             eccC--------------------------------------CeEEEEeCCCCccccCceEEEEECC-Cc--cccCeEEE
Confidence            8544                                      2377777776      234444554 32  24555554


Q ss_pred             -eCCEEEEecCC
Q 015463          386 -KDGKLWMGSVL  396 (406)
Q Consensus       386 -~~g~Ly~Gs~~  396 (406)
                       .+|+||+-+..
T Consensus       332 ~~~g~Lwv~sn~  343 (381)
T 3q6k_A          332 DSKGGLWFMSNG  343 (381)
T ss_dssp             CTTSCEEEEECS
T ss_pred             CCCCeEEEEECc
Confidence             57899997743

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.92  E-value=3.2e-07  Score=89.21  Aligned_cols=184  Identities=16%  Similarity=0.165  Sum_probs=124.1

Q ss_pred             ccCcceEEEcCCCCeeEEEe-cCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEE
Q 015463           68 IQGPESMAFDPLGRGPYTGV-ADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (406)
Q Consensus        68 ~~gpe~i~~d~~g~~ly~g~-~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~  146 (406)
                      ...|.+++++++|+.+|+.. .++.|..|+....+......                     ..+.|.++++++++..|+
T Consensus       211 ~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~---------------------~~~~~~~~~~~~~g~~l~  269 (433)
T 3bws_A          211 GKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD---------------------KIGLPRGLLLSKDGKELY  269 (433)
T ss_dssp             SSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC---------------------CCSEEEEEEECTTSSEEE
T ss_pred             CCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec---------------------CCCCceEEEEcCCCCEEE
Confidence            34678999999998776654 68999999976222221110                     124478999998444677


Q ss_pred             EEeC--------CCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCC-CEEEEeCCCchhhhccccccccccccccC
Q 015463          147 IADA--------YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRQMQKENIPLQLCSSL  217 (406)
Q Consensus       147 Vad~--------~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~~e~  217 (406)
                      ++..        .+.|+.+|..+++.......     ...+.+++++++| .+|++...                     
T Consensus       270 ~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~g~~l~~~~~~---------------------  323 (433)
T 3bws_A          270 IAQFSASNQESGGGRLGIYSMDKEKLIDTIGP-----PGNKRHIVSGNTENKIYVSDMC---------------------  323 (433)
T ss_dssp             EEEEESCTTCSCCEEEEEEETTTTEEEEEEEE-----EECEEEEEECSSTTEEEEEETT---------------------
T ss_pred             EEECCCCccccCCCeEEEEECCCCcEEeeccC-----CCCcceEEECCCCCEEEEEecC---------------------
Confidence            7773        34688999988765433211     1246788999999 47787543                     


Q ss_pred             CCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCC--------------CeEEEEEeeCCC
Q 015463          218 NDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--------------GRLHKYWLIGEK  283 (406)
Q Consensus       218 ~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~--------------~~i~~~~~~g~~  283 (406)
                                 ++.+..||.++++..........+.++++++|++.++++....              +.|+.+++..  
T Consensus       324 -----------~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~--  390 (433)
T 3bws_A          324 -----------CSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT--  390 (433)
T ss_dssp             -----------TTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT--
T ss_pred             -----------CCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC--
Confidence                       4789999999887665555556678999999999999887653              3888888653  


Q ss_pred             CcceeeeecCCCCCCceEECCCCCEEEEE
Q 015463          284 AGNLEAFAILPGYPDNVRTNEKGEFWVAI  312 (406)
Q Consensus       284 ~~~~~~~~~l~g~pd~i~~d~~G~lwv~~  312 (406)
                       ++..........+..++++++|+..++.
T Consensus       391 -~~~~~~~~~~~~~~~~~~s~dg~~l~~~  418 (433)
T 3bws_A          391 -DTVKEFWEAGNQPTGLDVSPDNRYLVIS  418 (433)
T ss_dssp             -TEEEEEEECSSSEEEEEECTTSCEEEEE
T ss_pred             -CcEEEEecCCCCCceEEEcCCCCEEEEE
Confidence             2211111223456788999999854433

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.90  E-value=3.4e-07  Score=85.94  Aligned_cols=215  Identities=16%  Similarity=0.070  Sum_probs=112.4

Q ss_pred             CcceEEEcCCCCeeEEE-ecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463           70 GPESMAFDPLGRGPYTG-VADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g-~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va  148 (406)
                      .|.+++++++|+.+|+. ..++.|+.++...-+.........              ........|.++++++++..||++
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~--------------~~~~~~~~~~~~~~spdg~~l~~~  109 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS--------------VPGEVGRSMYSFAISPDGKEVYAT  109 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCC--------------STTEEEECSSCEEECTTSSEEEEE
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccc--------------ccccccccccceEECCCCCEEEEE
Confidence            68999999999867765 467899999976211111110000              000001236789999844467887


Q ss_pred             eCC------------CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccc-ccccccccc
Q 015463          149 DAY------------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQK-ENIPLQLCS  215 (406)
Q Consensus       149 d~~------------~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~-~~~~~~~~~  215 (406)
                      ...            ..|+.+|.++++..........  ...+.++++++||++|+++..    ...|.. .+. ....+
T Consensus       110 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~l~~~~~~----i~~~d~~~~~-~~~~~  182 (349)
T 1jmx_B          110 VNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM--PRQVYLMRAADDGSLYVAGPD----IYKMDVKTGK-YTVAL  182 (349)
T ss_dssp             EEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC--CSSCCCEEECTTSCEEEESSS----EEEECTTTCC-EEEEE
T ss_pred             cccccccccccccCCCeEEEEECCCccccceeeeccC--CCcccceeECCCCcEEEccCc----EEEEeCCCCc-eeccc
Confidence            743            5789999876542211111111  124678889999998886421    000100 000 00000


Q ss_pred             cCCC-CC---------CCcc-cC-------------------------CCCeEEEEeCCCCeEEEec--ccCCCcceEEE
Q 015463          216 SLND-PS---------PIKI-TK-------------------------DTGRVLKYDPTTKQTTVLL--RNLQFPNGLSL  257 (406)
Q Consensus       216 e~~~-~~---------~~~~-~~-------------------------~~g~l~~~d~~t~~~~~~~--~~~~~~ngi~l  257 (406)
                      .... ..         .++. ..                         ....++.+|..+++++.+.  ..-..+.++++
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (349)
T 1jmx_B          183 PLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLR  262 (349)
T ss_dssp             CSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEE
T ss_pred             cccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEe
Confidence            0000 00         0000 00                         0011233555555544332  11234567888


Q ss_pred             ec-CCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCCCC-EEEE
Q 015463          258 SK-DKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE-FWVA  311 (406)
Q Consensus       258 ~~-d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~-lwv~  311 (406)
                      ++ |++.+|++   .+.|++++++.   ++........+.|.+++++++|+ +|++
T Consensus       263 sp~dg~~l~~~---~~~v~~~d~~~---~~~~~~~~~~~~~~~~~~s~dg~~l~~~  312 (349)
T 1jmx_B          263 SPKDPNQIYGV---LNRLAKYDLKQ---RKLIKAANLDHTYYCVAFDKKGDKLYLG  312 (349)
T ss_dssp             CSSCTTEEEEE---ESEEEEEETTT---TEEEEEEECSSCCCEEEECSSSSCEEEE
T ss_pred             cCCCCCEEEEE---cCeEEEEECcc---CeEEEEEcCCCCccceEECCCCCEEEEe
Confidence            99 99988887   46899998753   22111222345578899998886 6764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.88  E-value=1.2e-06  Score=88.93  Aligned_cols=182  Identities=9%  Similarity=-0.039  Sum_probs=119.9

Q ss_pred             EEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCCCcE
Q 015463           75 AFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGL  154 (406)
Q Consensus        75 ~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~~gl  154 (406)
                      +++++|.++.++..++.|..||....+.+....                     ....|++++++++...||+++..+.|
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~---------------------~g~~~~~v~~spdg~~l~v~~~d~~V  202 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVID---------------------TGYAVHISRMSASGRYLLVIGRDARI  202 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEE---------------------CSTTEEEEEECTTSCEEEEEETTSEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEe---------------------cCcccceEEECCCCCEEEEECCCCeE
Confidence            467788755556778899999976221111110                     01237899999955578999988889


Q ss_pred             EEEeC--CCCeEEEcccccCCcccccccceEEcC----CCC-EEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463          155 MKVGP--EGGLATSLATEAEGVPLRFTNDLDIDD----EGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK  227 (406)
Q Consensus       155 ~~~d~--~~~~~~~l~~~~~~~~~~~~~~l~~d~----dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  227 (406)
                      ..+|.  .+++...  ....+   ..|..+++++    ||+ +|+++..                               
T Consensus       203 ~v~D~~~~t~~~~~--~i~~g---~~p~~va~sp~~~~dg~~l~v~~~~-------------------------------  246 (543)
T 1nir_A          203 DMIDLWAKEPTKVA--EIKIG---IEARSVESSKFKGYEDRYTIAGAYW-------------------------------  246 (543)
T ss_dssp             EEEETTSSSCEEEE--EEECC---SEEEEEEECCSTTCTTTEEEEEEEE-------------------------------
T ss_pred             EEEECcCCCCcEEE--EEecC---CCcceEEeCCCcCCCCCEEEEEEcc-------------------------------
Confidence            99999  6665322  11112   3578999999    985 6666521                               


Q ss_pred             CCCeEEEEeCCCCeEEEeccc------------CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCC
Q 015463          228 DTGRVLKYDPTTKQTTVLLRN------------LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPG  295 (406)
Q Consensus       228 ~~g~l~~~d~~t~~~~~~~~~------------~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g  295 (406)
                       .+.+..+|..+++.......            -..+.++++++|+..++++....+.|+.++....+.-....+ ....
T Consensus       247 -~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~  324 (543)
T 1nir_A          247 -PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAP  324 (543)
T ss_dssp             -SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCS
T ss_pred             -CCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCc
Confidence             26688889888765443321            113457899999999999988889999999764322111111 2345


Q ss_pred             CCCceEECCCCC-EEEEEccC
Q 015463          296 YPDNVRTNEKGE-FWVAIHCR  315 (406)
Q Consensus       296 ~pd~i~~d~~G~-lwv~~~~~  315 (406)
                      .|.+++++++|+ ++++....
T Consensus       325 ~~~~~~~spdg~~l~va~~~~  345 (543)
T 1nir_A          325 FLHDGGWDSSHRYFMTAANNS  345 (543)
T ss_dssp             SCCCEEECTTSCEEEEEEGGG
T ss_pred             CccCceECCCCCEEEEEecCC
Confidence            688999999999 56665443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.88  E-value=2.5e-07  Score=84.07  Aligned_cols=152  Identities=22%  Similarity=0.272  Sum_probs=106.2

Q ss_pred             CcceEEEcCCCCeeEEEec-CCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463           70 GPESMAFDPLGRGPYTGVA-DGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va  148 (406)
                      ..|+++.+.  +.+|+.++ ++.++.+|.+..+.+....                  .   .+.+.|++.|  ++.||++
T Consensus        97 FgeGit~~g--~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~------------------~---~~eGwGLt~D--g~~L~vS  151 (268)
T 3nok_A           97 FAEGLASDG--ERLYQLTWTEGLLFTWSGMPPQRERTTR------------------Y---SGEGWGLCYW--NGKLVRS  151 (268)
T ss_dssp             CEEEEEECS--SCEEEEESSSCEEEEEETTTTEEEEEEE------------------C---SSCCCCEEEE--TTEEEEE
T ss_pred             ceeEEEEeC--CEEEEEEccCCEEEEEECCcCcEEEEEe------------------C---CCceeEEecC--CCEEEEE
Confidence            347888863  34888764 6889999987444333221                  0   1335788877  5799999


Q ss_pred             eCCCcEEEEeCCCCeEEE-cccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463          149 DAYFGLMKVGPEGGLATS-LATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK  227 (406)
Q Consensus       149 d~~~gl~~~d~~~~~~~~-l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  227 (406)
                      +....|..+|+++.++.. +.....+.+..++|.|... +|.||+..+.                               
T Consensus       152 dGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~-------------------------------  199 (268)
T 3nok_A          152 DGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWH-------------------------------  199 (268)
T ss_dssp             CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT-------------------------------
T ss_pred             CCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECC-------------------------------
Confidence            976789999999876543 2222355667788888877 8899998753                               


Q ss_pred             CCCeEEEEeCCCCeEEEecc--c------------CCCcceEEEecCCCEEEEEeCCCCeEEEEEe
Q 015463          228 DTGRVLKYDPTTKQTTVLLR--N------------LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWL  279 (406)
Q Consensus       228 ~~g~l~~~d~~t~~~~~~~~--~------------~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~  279 (406)
                       ...|.++|++++++....+  +            ..-+||||++++++.+|++.-.=.+++.+.+
T Consensus       200 -s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev~~  264 (268)
T 3nok_A          200 -SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEVRL  264 (268)
T ss_dssp             -CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEEEEE
T ss_pred             -CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEEEEE
Confidence             2579999999998765421  1            1256999999999999998654345665543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.87  E-value=3.6e-07  Score=82.22  Aligned_cols=153  Identities=17%  Similarity=0.155  Sum_probs=107.7

Q ss_pred             CcceEEEcCCCCeeEEEe-cCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463           70 GPESMAFDPLGRGPYTGV-ADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~-~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va  148 (406)
                      ..|+++.+  |+.+|..+ .++.++++|.+..+.+....                     ..+.+.|++.|  ++.||++
T Consensus        66 fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~~~ti~---------------------~~~~Gwglt~d--g~~L~vS  120 (243)
T 3mbr_X           66 FGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTPRARFR---------------------YPGEGWALTSD--DSHLYMS  120 (243)
T ss_dssp             CEEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEEEEE---------------------CSSCCCEEEEC--SSCEEEE
T ss_pred             ceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcEEEEEe---------------------CCCCceEEeeC--CCEEEEE
Confidence            44888876  34488775 46889999987444433221                     02346788765  5799999


Q ss_pred             eCCCcEEEEeCCCCeEEE-cccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463          149 DAYFGLMKVGPEGGLATS-LATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK  227 (406)
Q Consensus       149 d~~~gl~~~d~~~~~~~~-l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  227 (406)
                      +....|..+|+++.++.. +.....+.+..++|.+... +|.||+..+.                               
T Consensus       121 dgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~-------------------------------  168 (243)
T 3mbr_X          121 DGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWL-------------------------------  168 (243)
T ss_dssp             CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT-------------------------------
T ss_pred             CCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECC-------------------------------
Confidence            987889999999876532 3223356667778888876 8899988753                               


Q ss_pred             CCCeEEEEeCCCCeEEEec--cc------------CCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          228 DTGRVLKYDPTTKQTTVLL--RN------------LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       228 ~~g~l~~~d~~t~~~~~~~--~~------------~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                       +..|.++|++++++....  .+            ..-+||||++++++.+||+.-.=.+++.+.+.
T Consensus       169 -s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~~~  234 (243)
T 3mbr_X          169 -TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIRLT  234 (243)
T ss_dssp             -TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEEEC
T ss_pred             -CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEEEe
Confidence             257999999999876542  11            12469999999999999987544567766654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.84  E-value=5.7e-06  Score=76.80  Aligned_cols=185  Identities=9%  Similarity=-0.018  Sum_probs=120.6

Q ss_pred             CcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEE
Q 015463           70 GPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~V  147 (406)
                      ...++++.++++.++++..+|.|..|+..  .........                    ........+++.+++..|++
T Consensus        99 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--------------------~~~~~i~~~~~~~~~~~l~~  158 (337)
T 1gxr_A           99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT--------------------SSAPACYALAISPDSKVCFS  158 (337)
T ss_dssp             BEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEE--------------------CSSSCEEEEEECTTSSEEEE
T ss_pred             cEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecc--------------------cCCCceEEEEECCCCCEEEE
Confidence            45678999999989999999999999876  211111110                    11234568899983345666


Q ss_pred             EeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463          148 ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK  227 (406)
Q Consensus       148 ad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  227 (406)
                      +...+.|..+|.++++.......    ....+.++++.++|+..++.+.                               
T Consensus       159 ~~~dg~v~~~d~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~-------------------------------  203 (337)
T 1gxr_A          159 CCSDGNIAVWDLHNQTLVRQFQG----HTDGASCIDISNDGTKLWTGGL-------------------------------  203 (337)
T ss_dssp             EETTSCEEEEETTTTEEEEEECC----CSSCEEEEEECTTSSEEEEEET-------------------------------
T ss_pred             EeCCCcEEEEeCCCCceeeeeec----ccCceEEEEECCCCCEEEEEec-------------------------------
Confidence            76667799999887754332211    1234678899999977666432                               


Q ss_pred             CCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCCCC
Q 015463          228 DTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE  307 (406)
Q Consensus       228 ~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~  307 (406)
                       +|.+..||..+++.............++++++++.+++... .+.|..+++...+   ...+..-.+....++++++|+
T Consensus       204 -dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~i~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~  278 (337)
T 1gxr_A          204 -DNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGME-SSNVEVLHVNKPD---KYQLHLHESCVLSLKFAYCGK  278 (337)
T ss_dssp             -TSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEET-TSCEEEEETTSSC---EEEECCCSSCEEEEEECTTSS
T ss_pred             -CCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcC-CCcEEEEECCCCC---eEEEcCCccceeEEEECCCCC
Confidence             47899999988876554443445578999999998877654 5788888876432   112222223345677888998


Q ss_pred             EEEEEcc
Q 015463          308 FWVAIHC  314 (406)
Q Consensus       308 lwv~~~~  314 (406)
                      +.++...
T Consensus       279 ~l~~~~~  285 (337)
T 1gxr_A          279 WFVSTGK  285 (337)
T ss_dssp             EEEEEET
T ss_pred             EEEEecC
Confidence            6665543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.82  E-value=4.7e-07  Score=89.76  Aligned_cols=179  Identities=14%  Similarity=0.132  Sum_probs=107.4

Q ss_pred             cCcccCcceEEEcCCCC-eeEEEecCCEEEEEeCC-ce--eEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeC
Q 015463           65 LNQIQGPESMAFDPLGR-GPYTGVADGRILFWDGL-KW--TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK  140 (406)
Q Consensus        65 ~~~~~gpe~i~~d~~g~-~ly~g~~~g~I~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~  140 (406)
                      ..++..|.+|++.++|. .+|+....|+|++++.+ ..  +.+......   ...+        ......+.++||++++
T Consensus        10 a~gL~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~---~~~g--------~~~~~e~Gllgia~~P   78 (463)
T 2wg3_C           10 VSGLRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKL---VQSG--------IKGGDERGLLSLAFHP   78 (463)
T ss_dssp             EEEESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTT---BCCC--------CSSSCCCSEEEEEECT
T ss_pred             ccCCCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcce---eccC--------ccccCCCcceeeEeCC
Confidence            34689999999999984 38888889999999765 21  122221100   0000        0001135589999998


Q ss_pred             C---CCcEEEEeCC-------------CcEEEEeCCCC--------eEEEcccccCCcccccccceEEcCCCCEEEEeCC
Q 015463          141 K---TGDLYIADAY-------------FGLMKVGPEGG--------LATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSS  196 (406)
Q Consensus       141 ~---~g~L~Vad~~-------------~gl~~~d~~~~--------~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~  196 (406)
                      +   ++.|||+.+.             ..|.|+....+        ..+.+..............|++++||.||++...
T Consensus        79 ~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           79 NYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             THHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence            3   4789998542             25777765421        1222222211122356678999999999999754


Q ss_pred             CchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCC--------------------eEEEecccCCCcceEE
Q 015463          197 TNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTK--------------------QTTVLLRNLQFPNGLS  256 (406)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~--------------------~~~~~~~~~~~~ngi~  256 (406)
                      ........    ...+++           ....|.|+|+|+++.                    +.+++..++.+|.|++
T Consensus       159 ~~~~~~~~----~~~q~~-----------~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla  223 (463)
T 2wg3_C          159 GMITLDDM----EEMDGL-----------SDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCA  223 (463)
T ss_dssp             TTCCHHHH----HHCTTC-----------CSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEE
T ss_pred             CCCCCCcc----ccccCc-----------CCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEE
Confidence            22100000    000000           233589999999863                    3467888999999999


Q ss_pred             EecC-----CC-EEEEEeC
Q 015463          257 LSKD-----KS-FFVFCEG  269 (406)
Q Consensus       257 l~~d-----~~-~l~v~~t  269 (406)
                      ++++     ++ .+|.++.
T Consensus       224 ~dp~tg~~~G~l~~~~~D~  242 (463)
T 2wg3_C          224 VDRHPTDININLTILCSDS  242 (463)
T ss_dssp             EESSCSSTTCSEEEEEECC
T ss_pred             ECCCCCCcccceEEEeccc
Confidence            9987     23 4666664

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.79  E-value=3.5e-06  Score=80.53  Aligned_cols=155  Identities=11%  Similarity=0.111  Sum_probs=92.7

Q ss_pred             CcceEEEEeCCCCc-EEEEeCCCcEEEEeCC-CCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccc
Q 015463          131 GRPLGLRFDKKTGD-LYIADAYFGLMKVGPE-GGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKE  207 (406)
Q Consensus       131 ~~p~gi~~d~~~g~-L~Vad~~~gl~~~d~~-~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~  207 (406)
                      ..|..+++++ +|+ ||+++.. .+..++.+ +++...+.....+   ..+.++++++||+ +|+...+.+- ...+   
T Consensus        40 ~~~~~~a~sp-dg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~---g~~~~~~~spdg~~l~~~~~~~~~-~~~~---  110 (365)
T 1jof_A           40 EPISWMTFDH-ERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG---GHPRANDADTNTRAIFLLAAKQPP-YAVY---  110 (365)
T ss_dssp             CCCSEEEECT-TSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC---SSGGGGCTTSCCEEEEEEECSSTT-CCEE---
T ss_pred             CCCcEEEECC-CCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC---CCCccEEECCCCCEEEEEEecCCc-ceec---
Confidence            3578899999 565 8888876 78888875 6665433221111   1367789999998 3443221000 0000   


Q ss_pred             cccccccccCCCCCCCcccC----CCCeEEEEeCC-CCeEEEec-----ccCCCcceEEEecCCCEEEEEeCCCCeEEEE
Q 015463          208 NIPLQLCSSLNDPSPIKITK----DTGRVLKYDPT-TKQTTVLL-----RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKY  277 (406)
Q Consensus       208 ~~~~~~~~e~~~~~~~~~~~----~~g~l~~~d~~-t~~~~~~~-----~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~  277 (406)
                                        ..    ..|.+..|+.+ +++.....     .....+++++++||++.+|+++...++|+.|
T Consensus       111 ------------------~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~  172 (365)
T 1jof_A          111 ------------------ANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTH  172 (365)
T ss_dssp             ------------------EEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             ------------------cceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEE
Confidence                              00    13455555543 24443221     1345688999999999999998777899999


Q ss_pred             EeeCCCCcceeeee--cC---CCCCCceEECCCCC-EEEEEcc
Q 015463          278 WLIGEKAGNLEAFA--IL---PGYPDNVRTNEKGE-FWVAIHC  314 (406)
Q Consensus       278 ~~~g~~~~~~~~~~--~l---~g~pd~i~~d~~G~-lwv~~~~  314 (406)
                      +++.  .++.....  ..   ...|..++++++|+ +|++...
T Consensus       173 ~~~~--~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~  213 (365)
T 1jof_A          173 RKLA--SGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA  213 (365)
T ss_dssp             EECT--TSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT
T ss_pred             EECC--CCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECC
Confidence            9861  12222111  21   23488899999997 6777643

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.77  E-value=5.2e-07  Score=81.96  Aligned_cols=190  Identities=17%  Similarity=0.190  Sum_probs=119.2

Q ss_pred             eEEEEeCCCCcEEEEeCCC-cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccccccc
Q 015463          134 LGLRFDKKTGDLYIADAYF-GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQ  212 (406)
Q Consensus       134 ~gi~~d~~~g~L~Vad~~~-gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~  212 (406)
                      .||.++  ++.||+++... .|.++|++++++..-.  .+.  ..+..+++++ .++||+.+..                
T Consensus        58 qGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~--~~FgeGit~~-g~~Ly~ltw~----------------  114 (268)
T 3nok_A           58 QGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME--RLG--NIFAEGLASD-GERLYQLTWT----------------  114 (268)
T ss_dssp             EEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE--ECT--TCCEEEEEEC-SSCEEEEESS----------------
T ss_pred             ceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCC--CcceeEEEEe-CCEEEEEEcc----------------
Confidence            589998  58999999874 5889999998753322  122  1244567776 4589999853                


Q ss_pred             ccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeec
Q 015463          213 LCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI  292 (406)
Q Consensus       213 ~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~  292 (406)
                                      .+.++.||+++.+...-...  .+.|..+++|++.||+++ +.++|+.++.+..+.-. .+-..
T Consensus       115 ----------------~~~v~V~D~~Tl~~~~ti~~--~~eGwGLt~Dg~~L~vSd-Gs~~l~~iDp~T~~v~~-~I~V~  174 (268)
T 3nok_A          115 ----------------EGLLFTWSGMPPQRERTTRY--SGEGWGLCYWNGKLVRSD-GGTMLTFHEPDGFALVG-AVQVK  174 (268)
T ss_dssp             ----------------SCEEEEEETTTTEEEEEEEC--SSCCCCEEEETTEEEEEC-SSSEEEEECTTTCCEEE-EEECE
T ss_pred             ----------------CCEEEEEECCcCcEEEEEeC--CCceeEEecCCCEEEEEC-CCCEEEEEcCCCCeEEE-EEEeC
Confidence                            37899999998876543322  234566668899999997 57899999865321111 11111


Q ss_pred             CCC----CCCceEECCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCC-CCEEE
Q 015463          293 LPG----YPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPE-GKILQ  367 (406)
Q Consensus       293 l~g----~pd~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~  367 (406)
                      ..+    +++.+... +|.+|++.....                                      .|.++|++ |+++.
T Consensus       175 ~~g~~v~~lNeLe~~-dG~lyanvw~s~--------------------------------------~I~vIDp~TG~V~~  215 (268)
T 3nok_A          175 LRGQPVELINELECA-NGVIYANIWHSS--------------------------------------DVLEIDPATGTVVG  215 (268)
T ss_dssp             ETTEECCCEEEEEEE-TTEEEEEETTCS--------------------------------------EEEEECTTTCBEEE
T ss_pred             CCCcccccccccEEe-CCEEEEEECCCC--------------------------------------eEEEEeCCCCcEEE
Confidence            111    23445554 789998885431                                      26677874 67766


Q ss_pred             EEECCC--------C-CeeeceeEEEE--eCCEEEEecCCCCeEEEEeC
Q 015463          368 VLEDSK--------G-KVVKAISEVEE--KDGKLWMGSVLMPFVAVYDL  405 (406)
Q Consensus       368 ~~~~~~--------g-~~~~~~s~~~~--~~g~Ly~Gs~~~~~i~~~~~  405 (406)
                      .+.-..        . .......++..  ..++||+.+-..|.++.+.+
T Consensus       216 ~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev~~  264 (268)
T 3nok_A          216 VIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEVRL  264 (268)
T ss_dssp             EEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEEEEE
T ss_pred             EEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEEEEE
Confidence            664210        0 00012233433  25789999999999988765

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=98.76  E-value=2.1e-05  Score=72.86  Aligned_cols=189  Identities=15%  Similarity=0.096  Sum_probs=117.9

Q ss_pred             cCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCC
Q 015463           65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT  142 (406)
Q Consensus        65 ~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~  142 (406)
                      .+.-....++++.++|+.+.+++.+|.|..|+..  ......  .                    ........+++.+ +
T Consensus        20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~--~--------------------~h~~~v~~~~~~~-~   76 (312)
T 4ery_A           20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI--S--------------------GHKLGISDVAWSS-D   76 (312)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE--C--------------------CCSSCEEEEEECT-T
T ss_pred             cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhh--c--------------------cCCCceEEEEEcC-C
Confidence            4444566889999999988899999999999865  221111  0                    0123467889998 5


Q ss_pred             Cc-EEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCC
Q 015463          143 GD-LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPS  221 (406)
Q Consensus       143 g~-L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~  221 (406)
                      ++ |..+...+.|..+|.++++........    ...+..+++.++|++.++.+.                         
T Consensus        77 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~s~~~-------------------------  127 (312)
T 4ery_A           77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGH----SNYVFCCNFNPQSNLIVSGSF-------------------------  127 (312)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEEEEEECC----SSCEEEEEECSSSSEEEEEET-------------------------
T ss_pred             CCEEEEECCCCEEEEEECCCCcEEEEEcCC----CCCEEEEEEcCCCCEEEEEeC-------------------------
Confidence            55 455555566888998877543222111    124677889999987776532                         


Q ss_pred             CCcccCCCCeEEEEeCCCCeEEEeccc-CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecC-CCCCCc
Q 015463          222 PIKITKDTGRVLKYDPTTKQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAIL-PGYPDN  299 (406)
Q Consensus       222 ~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l-~g~pd~  299 (406)
                             +|.+..||..+++....... ......++++++++.++.+. ..+.|..+++...+  ....+... ......
T Consensus       128 -------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~  197 (312)
T 4ery_A          128 -------DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS-YDGLCRIWDTASGQ--CLKTLIDDDNPPVSF  197 (312)
T ss_dssp             -------TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCC--EEEEECCSSCCCEEE
T ss_pred             -------CCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCc--eeeEEeccCCCceEE
Confidence                   47799999987765443332 23346789999998776554 45788888865321  11112111 111234


Q ss_pred             eEECCCCCEEEEEccC
Q 015463          300 VRTNEKGEFWVAIHCR  315 (406)
Q Consensus       300 i~~d~~G~lwv~~~~~  315 (406)
                      ++++++|++.++....
T Consensus       198 ~~~~~~~~~l~~~~~d  213 (312)
T 4ery_A          198 VKFSPNGKYILAATLD  213 (312)
T ss_dssp             EEECTTSSEEEEEETT
T ss_pred             EEECCCCCEEEEEcCC
Confidence            6788888866665443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.75  E-value=8.8e-07  Score=83.06  Aligned_cols=141  Identities=13%  Similarity=0.073  Sum_probs=93.6

Q ss_pred             EEEEeCCCCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhcccccccccc
Q 015463          135 GLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQ  212 (406)
Q Consensus       135 gi~~d~~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~  212 (406)
                      |+++.. ++.+|++... +.|..+|.++++....... ..  ...+..++++++|+ +|++...                
T Consensus         4 g~~~~~-~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-~~--~~~~~~~~~s~dg~~~~v~~~~----------------   63 (349)
T 1jmx_B            4 GPALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVM-PD--KFGPGTAMMAPDNRTAYVLNNH----------------   63 (349)
T ss_dssp             CCCCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEEC-SS--CCSSCEEEECTTSSEEEEEETT----------------
T ss_pred             cccccC-CCEEEEEeCCCCeEEEEECCCCcEEEEEec-CC--CCCCceeEECCCCCEEEEEeCC----------------
Confidence            345565 7788887655 5799999988865432221 11  11477899999996 7777632                


Q ss_pred             ccccCCCCCCCcccCCCCeEEEEeCCCCeEEEeccc-------CCCcceEEEecCCCEEEEEeCC-----------CCeE
Q 015463          213 LCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRN-------LQFPNGLSLSKDKSFFVFCEGS-----------VGRL  274 (406)
Q Consensus       213 ~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-------~~~~ngi~l~~d~~~l~v~~t~-----------~~~i  274 (406)
                                      .+.|+.+|.++++.......       ...+.++++++|++.++++...           .+.|
T Consensus        64 ----------------~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i  127 (349)
T 1jmx_B           64 ----------------YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRL  127 (349)
T ss_dssp             ----------------TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEE
T ss_pred             ----------------CCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeE
Confidence                            36799999998876543322       1237899999999999988743           4789


Q ss_pred             EEEEeeCCCCcceeeeecCCCCCCceEECCCCCEEEE
Q 015463          275 HKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVA  311 (406)
Q Consensus       275 ~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~lwv~  311 (406)
                      +.+++...+..........+..+..++++++|++|++
T Consensus       128 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~l~~~  164 (349)
T 1jmx_B          128 EVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA  164 (349)
T ss_dssp             EEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE
T ss_pred             EEEECCCccccceeeeccCCCcccceeECCCCcEEEc
Confidence            9999864322211111123334677889999998885

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.75  E-value=3.5e-06  Score=82.26  Aligned_cols=179  Identities=12%  Similarity=0.062  Sum_probs=114.3

Q ss_pred             CcceEEEcCCCCeeEEEecCC---EEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc
Q 015463           70 GPESMAFDPLGRGPYTGVADG---RILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~~g---~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~  144 (406)
                      ...++++.++|+.++++..++   .|+.++..  +...+..                       ..+....+++++ +|+
T Consensus       180 ~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~-----------------------~~~~~~~~~~sp-dg~  235 (415)
T 2hqs_A          180 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-----------------------FPRHNGAPAFSP-DGS  235 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC-----------------------CSSCEEEEEECT-TSS
T ss_pred             cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeec-----------------------CCCcccCEEEcC-CCC
Confidence            456789999999777776664   89999876  2222211                       023456789999 666


Q ss_pred             -EEEEeCC---CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCC
Q 015463          145 -LYIADAY---FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLND  219 (406)
Q Consensus       145 -L~Vad~~---~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~  219 (406)
                       |+++...   ..|+.+|.++++...+....     ..+..+++.+||+ |+++...                       
T Consensus       236 ~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~l~~~s~~-----------------------  287 (415)
T 2hqs_A          236 KLAFALSKTGSLNLYVMDLASGQIRQVTDGR-----SNNTEPTWFPDSQNLAFTSDQ-----------------------  287 (415)
T ss_dssp             EEEEEECTTSSCEEEEEETTTCCEEECCCCS-----SCEEEEEECTTSSEEEEEECT-----------------------
T ss_pred             EEEEEEecCCCceEEEEECCCCCEEeCcCCC-----CcccceEECCCCCEEEEEECC-----------------------
Confidence             5544332   34999999988776553221     2356788999997 5555421                       


Q ss_pred             CCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCC--CCeEEEEEeeCCCCcceeeeecCCCCC
Q 015463          220 PSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS--VGRLHKYWLIGEKAGNLEAFAILPGYP  297 (406)
Q Consensus       220 ~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~--~~~i~~~~~~g~~~~~~~~~~~l~g~p  297 (406)
                             .....|+.+|..+++.+.+.........++++||++.++++...  ...|+.+++.+.   ....+... ...
T Consensus       288 -------~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~---~~~~l~~~-~~~  356 (415)
T 2hqs_A          288 -------AGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG---GVQVLSST-FLD  356 (415)
T ss_dssp             -------TSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC---CEEECCCS-SSC
T ss_pred             -------CCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC---CEEEecCC-CCc
Confidence                   11236999999988766654333445578999999988877653  347888887642   22222211 234


Q ss_pred             CceEECCCCCEEEE
Q 015463          298 DNVRTNEKGEFWVA  311 (406)
Q Consensus       298 d~i~~d~~G~lwv~  311 (406)
                      ..++++++|+..+.
T Consensus       357 ~~~~~spdg~~l~~  370 (415)
T 2hqs_A          357 ETPSLAPNGTMVIY  370 (415)
T ss_dssp             EEEEECTTSSEEEE
T ss_pred             CCeEEcCCCCEEEE
Confidence            56778899984443

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.75  E-value=2.3e-06  Score=79.69  Aligned_cols=157  Identities=13%  Similarity=0.026  Sum_probs=98.5

Q ss_pred             eeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC-cEEEEeCC-CcEEEEeC
Q 015463           82 GPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG-DLYIADAY-FGLMKVGP  159 (406)
Q Consensus        82 ~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g-~L~Vad~~-~gl~~~d~  159 (406)
                      .++++..++.|..++....+......                  .....++|.++++++ +| .+|++... +.|..+|.
T Consensus         3 ~~v~~~~~~~v~~~d~~~~~~~~~~~------------------~~~~~~~~~~~~~s~-dg~~l~v~~~~~~~v~~~d~   63 (337)
T 1pby_B            3 YILAPARPDKLVVIDTEKMAVDKVIT------------------IADAGPTPMVPMVAP-GGRIAYATVNKSESLVKIDL   63 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEE------------------CTTCTTCCCCEEECT-TSSEEEEEETTTTEEEEEET
T ss_pred             EEEEcCCCCeEEEEECCCCcEEEEEE------------------cCCCCCCccceEEcC-CCCEEEEEeCCCCeEEEEEC
Confidence            47778889999999976222221110                  000001588899999 55 68888765 56999999


Q ss_pred             CCCeEEE-cccccCCcccccccceEEcCCC-CEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeC
Q 015463          160 EGGLATS-LATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDP  237 (406)
Q Consensus       160 ~~~~~~~-l~~~~~~~~~~~~~~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~  237 (406)
                      .+++... +.....+.....+.+++++++| .+|+++....... .+         .           ....+.|..+|.
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~-~~---------~-----------~~~~~~i~v~d~  122 (337)
T 1pby_B           64 VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLEL-TH---------F-----------EVQPTRVALYDA  122 (337)
T ss_dssp             TTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECS-SC---------E-----------EECCCEEEEEET
T ss_pred             CCCCeEeeEEcCCcccccccccceEECCCCCEEEEEeccccccc-cc---------c-----------cccCceEEEEEC
Confidence            8876543 2211111112257889999999 5777752100000 00         0           002478999999


Q ss_pred             CCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463          238 TTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  281 (406)
Q Consensus       238 ~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g  281 (406)
                      ++++..........+.++++++|++.++++   .+.|+.+++.+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~---~~~i~~~d~~~  163 (337)
T 1pby_B          123 ETLSRRKAFEAPRQITMLAWARDGSKLYGL---GRDLHVMDPEA  163 (337)
T ss_dssp             TTTEEEEEEECCSSCCCEEECTTSSCEEEE---SSSEEEEETTT
T ss_pred             CCCcEEEEEeCCCCcceeEECCCCCEEEEe---CCeEEEEECCC
Confidence            988765554444567899999999999887   36799998753

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.75  E-value=1.4e-06  Score=83.31  Aligned_cols=162  Identities=10%  Similarity=0.017  Sum_probs=97.0

Q ss_pred             cceEEEcCCCCeeEEEec------CCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc
Q 015463           71 PESMAFDPLGRGPYTGVA------DGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (406)
Q Consensus        71 pe~i~~d~~g~~ly~g~~------~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~  144 (406)
                      ..++++.+||+.|.+++.      +|.|..++...-...       ...|..        ...+ ......+++.+ ++.
T Consensus        45 V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~-------~~~~~~--------~~~~-~~~V~~~~~s~-d~~  107 (357)
T 4g56_B           45 IGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN-------ESLCTA--------GVQT-EAGVTDVAWVS-EKG  107 (357)
T ss_dssp             EEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---C-------GGGCSE--------EEEC-SSCEEEEEEET-TTE
T ss_pred             EEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcc-------eeEecc--------cCCC-CCCEEEEEEcC-CCC
Confidence            478999999997888775      667777764310000       000000        0011 23367899999 788


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCc
Q 015463          145 LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIK  224 (406)
Q Consensus       145 L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  224 (406)
                      ++++...+.|..+|..+++...............+.++++.++|+..++.+.                            
T Consensus       108 ~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~----------------------------  159 (357)
T 4g56_B          108 ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGK----------------------------  159 (357)
T ss_dssp             EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEET----------------------------
T ss_pred             EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeC----------------------------
Confidence            8888877778888877664322111100001235788999999988776532                            


Q ss_pred             ccCCCCeEEEEeCCCCeEEEeccc-CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463          225 ITKDTGRVLKYDPTTKQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  281 (406)
Q Consensus       225 ~~~~~g~l~~~d~~t~~~~~~~~~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g  281 (406)
                          +|.|..+|.++++....... ....+.++++++++.++++....+.|..+++..
T Consensus       160 ----dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~  213 (357)
T 4g56_B          160 ----DFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK  213 (357)
T ss_dssp             ----TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTS
T ss_pred             ----CCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCC
Confidence                46799999998876554433 234568899998876666665567788877653

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=98.75  E-value=1.3e-07  Score=90.68  Aligned_cols=159  Identities=16%  Similarity=0.142  Sum_probs=101.4

Q ss_pred             CCcceEEEEeCCCCc-EEEEeCCCcEEEEeCCCCeEEEcccc--cCCcccccccceEEcC----CCCEEEEeCCCchhhh
Q 015463          130 CGRPLGLRFDKKTGD-LYIADAYFGLMKVGPEGGLATSLATE--AEGVPLRFTNDLDIDD----EGNVYFTDSSTNYQRR  202 (406)
Q Consensus       130 ~~~p~gi~~d~~~g~-L~Vad~~~gl~~~d~~~~~~~~l~~~--~~~~~~~~~~~l~~d~----dG~ly~t~~~~~~~~~  202 (406)
                      ...|.+|++++ +|+ |||++..+.|+++++++...+.+...  ........+.+|++++    +|.||++.+....   
T Consensus        17 l~~P~~i~~~p-dG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~---   92 (353)
T 2g8s_A           17 LDHPWALAFLP-DNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGD---   92 (353)
T ss_dssp             ESSEEEEEECS-TTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECS---
T ss_pred             CCCcEEEEEcC-CCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCC---
Confidence            35699999999 899 99999887899999764321222211  0011123568999998    5899999742100   


Q ss_pred             ccccccccccccccCCCCCCCcccCCCCeEEEEeCCCC-----eEEEeccc-------CCCcceEEEecCCCEEEEEeCC
Q 015463          203 QMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTK-----QTTVLLRN-------LQFPNGLSLSKDKSFFVFCEGS  270 (406)
Q Consensus       203 ~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~-----~~~~~~~~-------~~~~ngi~l~~d~~~l~v~~t~  270 (406)
                                   +         +....+|.+++.+.+     ..+++...       .++++++++++|+ .||++.-.
T Consensus        93 -------------~---------g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd  149 (353)
T 2g8s_A           93 -------------D---------GKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGE  149 (353)
T ss_dssp             -------------S---------SCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECC
T ss_pred             -------------C---------CCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECC
Confidence                         0         000246888766433     23333322       3447799999999 68898522


Q ss_pred             -------------CCeEEEEEeeCCCC----------cceeeeecCCCCCCceEECC-CCCEEEEEccC
Q 015463          271 -------------VGRLHKYWLIGEKA----------GNLEAFAILPGYPDNVRTNE-KGEFWVAIHCR  315 (406)
Q Consensus       271 -------------~~~i~~~~~~g~~~----------~~~~~~~~l~g~pd~i~~d~-~G~lwv~~~~~  315 (406)
                                   .++|+|++.+|.-.          ...+++......|.++++|+ +|+||++....
T Consensus       150 ~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~  218 (353)
T 2g8s_A          150 NNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGP  218 (353)
T ss_dssp             TTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECS
T ss_pred             CCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCC
Confidence                         35899999876310          13455553223488999998 89999997653

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.73  E-value=1.1e-05  Score=75.82  Aligned_cols=197  Identities=9%  Similarity=0.124  Sum_probs=116.8

Q ss_pred             cCcccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc
Q 015463           65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (406)
Q Consensus        65 ~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~  144 (406)
                      .+.-....++++.++|+.+++++.+|.|..|+...........                    ...+....+++++ +++
T Consensus        29 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--------------------~h~~~v~~~~~~~-~~~   87 (369)
T 3zwl_B           29 TGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLD--------------------GHTGTIWSIDVDC-FTK   87 (369)
T ss_dssp             ECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEEC--------------------CCSSCEEEEEECT-TSS
T ss_pred             EEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhh--------------------hcCCcEEEEEEcC-CCC
Confidence            4444566889999999989999999999999866212211111                    1124467899998 555


Q ss_pred             -EEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCC
Q 015463          145 -LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPI  223 (406)
Q Consensus       145 -L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  223 (406)
                       |+.+...+.|..+|.++++.......     ...+..+++.++|...++.....                         
T Consensus        88 ~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~~~-------------------------  137 (369)
T 3zwl_B           88 YCVTGSADYSIKLWDVSNGQCVATWKS-----PVPVKRVEFSPCGNYFLAILDNV-------------------------  137 (369)
T ss_dssp             EEEEEETTTEEEEEETTTCCEEEEEEC-----SSCEEEEEECTTSSEEEEEECCB-------------------------
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEeec-----CCCeEEEEEccCCCEEEEecCCc-------------------------
Confidence             55555556699999887765432221     12467889999998776653210                         


Q ss_pred             cccCCCCeEEEEeCCCCeE------------EEec--ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceee
Q 015463          224 KITKDTGRVLKYDPTTKQT------------TVLL--RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEA  289 (406)
Q Consensus       224 ~~~~~~g~l~~~d~~t~~~------------~~~~--~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~  289 (406)
                        ....|.+..||..++..            ..+.  .+......++++++++.++++. ..+.|..|++... ......
T Consensus       138 --~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~-~~~~~~  213 (369)
T 3zwl_B          138 --MKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGH-KDGKISKYDVSNN-YEYVDS  213 (369)
T ss_dssp             --TTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEE-TTSEEEEEETTTT-TEEEEE
T ss_pred             --cCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEc-CCCEEEEEECCCC-cEeEEE
Confidence              11125566666544321            1111  1112456788999998876665 4578999987531 111112


Q ss_pred             eecCCCCCCceEECCCCCEEEEEccCC
Q 015463          290 FAILPGYPDNVRTNEKGEFWVAIHCRR  316 (406)
Q Consensus       290 ~~~l~g~pd~i~~d~~G~lwv~~~~~~  316 (406)
                      +..-.+....++++++|++.++.....
T Consensus       214 ~~~~~~~v~~~~~~~~~~~l~~~~~d~  240 (369)
T 3zwl_B          214 IDLHEKSISDMQFSPDLTYFITSSRDT  240 (369)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EecCCCceeEEEECCCCCEEEEecCCc
Confidence            221223345677888888665554333

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.72  E-value=6.9e-06  Score=83.60  Aligned_cols=192  Identities=14%  Similarity=0.108  Sum_probs=121.1

Q ss_pred             cCcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEe----CCC
Q 015463           69 QGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFD----KKT  142 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d----~~~  142 (406)
                      ..|++++++++|+.+|++..++.|..||..  ..+.+...                     ..+..|.+++++    +++
T Consensus       197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i---------------------~~G~~P~~ia~s~~~~pDG  255 (567)
T 1qks_A          197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI---------------------KIGSEARSIETSKMEGWED  255 (567)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEE---------------------ECCSEEEEEEECCSTTCTT
T ss_pred             CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEE---------------------ecCCCCceeEEccccCCCC
Confidence            368899999999999999999999999973  22222211                     113568999999    545


Q ss_pred             CcEEEEeCC-CcEEEEeCCCCeEEEc-ccc---cCC---cccccccceEEcCCCCEEEEeCCCchhhhcccccccccccc
Q 015463          143 GDLYIADAY-FGLMKVGPEGGLATSL-ATE---AEG---VPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLC  214 (406)
Q Consensus       143 g~L~Vad~~-~gl~~~d~~~~~~~~l-~~~---~~~---~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~  214 (406)
                      ..+||++.. +.+..+|..+.+.... ...   .++   .+...+..++..+++..|+..                    
T Consensus       256 k~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~--------------------  315 (567)
T 1qks_A          256 KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN--------------------  315 (567)
T ss_dssp             TEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE--------------------
T ss_pred             CEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEE--------------------
Confidence            578998876 6788999877654322 111   111   011134456666665544433                    


Q ss_pred             ccCCCCCCCcccCCCCeEEEEeCCCCeEEEe--cccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeec
Q 015463          215 SSLNDPSPIKITKDTGRVLKYDPTTKQTTVL--LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI  292 (406)
Q Consensus       215 ~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~--~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~  292 (406)
                                 ...+|.|..+|..+.+....  ...-.++.++.+++|++++|++....+.|..++.+..   +..-...
T Consensus       316 -----------~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~---kl~~~i~  381 (567)
T 1qks_A          316 -----------VKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG---KLVAIED  381 (567)
T ss_dssp             -----------ETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT---EEEEEEE
T ss_pred             -----------ecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCC---cEEEEEe
Confidence                       22358899998876432111  2234567889999999999999888899999997632   2111122


Q ss_pred             C-CCCC---CceE-ECCC-CCEEEEEccC
Q 015463          293 L-PGYP---DNVR-TNEK-GEFWVAIHCR  315 (406)
Q Consensus       293 l-~g~p---d~i~-~d~~-G~lwv~~~~~  315 (406)
                      . ...|   .+.. ++++ |.+|++...+
T Consensus       382 vgg~~Phpg~g~~~~~p~~g~v~~t~~~g  410 (567)
T 1qks_A          382 TGGQTPHPGRGANFVHPTFGPVWATSHMG  410 (567)
T ss_dssp             CSSSSBCCTTCEEEEETTTEEEEEEEBSS
T ss_pred             ccCcCCCCccceeeECCCCCcEEEeCCCC
Confidence            2 2223   3543 4665 6799877533

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.71  E-value=1.1e-05  Score=73.33  Aligned_cols=197  Identities=13%  Similarity=0.155  Sum_probs=122.8

Q ss_pred             CcceEEEEeCCCCcEEEE-eCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccc
Q 015463          131 GRPLGLRFDKKTGDLYIA-DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENI  209 (406)
Q Consensus       131 ~~p~gi~~d~~~g~L~Va-d~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~  209 (406)
                      ..+-||+++++++.||+. +....|+++|+++...+.+.  ..+  ...+.+|+++.+|.+|+++..             
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~--l~g--~~D~EGIa~~~~g~~~vs~E~-------------   89 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIP--LDF--VKDLETIEYIGDNQFVISDER-------------   89 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEE--CSS--CSSEEEEEECSTTEEEEEETT-------------
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEe--cCC--CCChHHeEEeCCCEEEEEECC-------------
Confidence            458899999866789974 44467999999844333332  122  245778999999999998642             


Q ss_pred             cccccccCCCCCCCcccCCCCeEEEEeCCCCe-EE---EecccC------CCcceEEEecCCCEEEEEeCCCC-eEEEEE
Q 015463          210 PLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQ-TT---VLLRNL------QFPNGLSLSKDKSFFVFCEGSVG-RLHKYW  278 (406)
Q Consensus       210 ~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~-~~---~~~~~~------~~~ngi~l~~d~~~l~v~~t~~~-~i~~~~  278 (406)
                                         .++|+.|+..... ..   ...-.+      ....|++++++++.+|++..... +|+.++
T Consensus        90 -------------------~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~  150 (255)
T 3qqz_A           90 -------------------DYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN  150 (255)
T ss_dssp             -------------------TTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred             -------------------CCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc
Confidence                               2556666533222 11   111111      12269999999988888765433 677776


Q ss_pred             eeCC-CCcceeeeec------C-CCCCCceEECCC-CCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeec
Q 015463          279 LIGE-KAGNLEAFAI------L-PGYPDNVRTNEK-GEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVG  349 (406)
Q Consensus       279 ~~g~-~~~~~~~~~~------l-~g~pd~i~~d~~-G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  349 (406)
                        |. ......+..+      . -.-+.++++|+. |++||-....+                                 
T Consensus       151 --g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~---------------------------------  195 (255)
T 3qqz_A          151 --GLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESR---------------------------------  195 (255)
T ss_dssp             --STTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTT---------------------------------
T ss_pred             --ccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCC---------------------------------
Confidence              32 1112222211      0 112578888864 66888775441                                 


Q ss_pred             CcceEEEEEECCCCCEEEEEECCCCC-----eeeceeEEEE-eCCEEEEecCCCCeEEEEe
Q 015463          350 GRLHAMAVKYSPEGKILQVLEDSKGK-----VVKAISEVEE-KDGKLWMGSVLMPFVAVYD  404 (406)
Q Consensus       350 ~~~~~~v~~~d~~g~~~~~~~~~~g~-----~~~~~s~~~~-~~g~Ly~Gs~~~~~i~~~~  404 (406)
                           .++.+|.+|+++..+.-..|.     .+.....+.. .+|+||+.+= .|.++++.
T Consensus       196 -----~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE-~n~~y~f~  250 (255)
T 3qqz_A          196 -----ALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSE-PNRFYRFT  250 (255)
T ss_dssp             -----EEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEET-TTEEEEEE
T ss_pred             -----eEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcC-CceEEEEE
Confidence                 388899999988777644442     2345556654 5789999864 67888875

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=98.70  E-value=2.5e-07  Score=91.70  Aligned_cols=164  Identities=12%  Similarity=0.199  Sum_probs=102.8

Q ss_pred             CCcceEEEEeCCCCcEEEEeCCC-cEEEEeCCCCeEEEcccccCC----cccccccceEEcC----CCCEEEEeCCCchh
Q 015463          130 CGRPLGLRFDKKTGDLYIADAYF-GLMKVGPEGGLATSLATEAEG----VPLRFTNDLDIDD----EGNVYFTDSSTNYQ  200 (406)
Q Consensus       130 ~~~p~gi~~d~~~g~L~Vad~~~-gl~~~d~~~~~~~~l~~~~~~----~~~~~~~~l~~d~----dG~ly~t~~~~~~~  200 (406)
                      ...|.+|++++ +|+|||++... .|++++..+++.+.+......    .....+.+|++++    +|.||++.+.....
T Consensus        26 l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence            35699999999 89999999875 499999876665544321111    0123466899998    78999997420000


Q ss_pred             hhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCC--e---EEEecc-----cCCCcceEEEecCCCEEEEEeCC
Q 015463          201 RRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTK--Q---TTVLLR-----NLQFPNGLSLSKDKSFFVFCEGS  270 (406)
Q Consensus       201 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~--~---~~~~~~-----~~~~~ngi~l~~d~~~l~v~~t~  270 (406)
                      ...-           .         .....+|++++.+.+  +   .+++.+     ..+++++|++++|+. ||++.-.
T Consensus       105 ~~~~-----------~---------~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~Gd  163 (454)
T 1cru_A          105 STDK-----------E---------LPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIGD  163 (454)
T ss_dssp             C--C-----------C---------SCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEECC
T ss_pred             CCcc-----------c---------cccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEECC
Confidence            0000           0         000246888765432  2   233332     245678999999996 8887431


Q ss_pred             --------------------------------CCeEEEEEeeCCCC-c-------ceeeeecCCCCCCceEECCCCCEEE
Q 015463          271 --------------------------------VGRLHKYWLIGEKA-G-------NLEAFAILPGYPDNVRTNEKGEFWV  310 (406)
Q Consensus       271 --------------------------------~~~i~~~~~~g~~~-~-------~~~~~~~l~g~pd~i~~d~~G~lwv  310 (406)
                                                      .++|+|++.+|.-. +       ..++++.-...|.++++|++|+||+
T Consensus       164 ~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp~G~L~~  243 (454)
T 1cru_A          164 QGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGKLLQ  243 (454)
T ss_dssp             TTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSCEEE
T ss_pred             CCCCCccccccccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECCCCCEEE
Confidence                                            36799999876311 1       2456653223478899999999999


Q ss_pred             EEccC
Q 015463          311 AIHCR  315 (406)
Q Consensus       311 ~~~~~  315 (406)
                      +.+..
T Consensus       244 ~d~g~  248 (454)
T 1cru_A          244 SEQGP  248 (454)
T ss_dssp             EEECS
T ss_pred             EecCC
Confidence            98643

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=98.69  E-value=4.4e-05  Score=71.51  Aligned_cols=191  Identities=14%  Similarity=0.068  Sum_probs=119.0

Q ss_pred             cCcccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc
Q 015463           65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (406)
Q Consensus        65 ~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~  144 (406)
                      .+.-.+..++.+.+++..+.+++.++.|..|+...-+.+.....                    .......+++.+ +++
T Consensus        77 ~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~--------------------~~~~~~~~~~sp-dg~  135 (321)
T 3ow8_A           77 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDA--------------------GPVDAWTLAFSP-DSQ  135 (321)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC--------------------CTTCCCCEEECT-TSS
T ss_pred             ccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeC--------------------CCccEEEEEECC-CCC
Confidence            34444567888889998888999999999999762122111110                    012345688998 565


Q ss_pred             E-EEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCC
Q 015463          145 L-YIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPI  223 (406)
Q Consensus       145 L-~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  223 (406)
                      . ..+...+.+..++.++++.......    ....+..+++.++|++.++.+.                           
T Consensus       136 ~l~~g~~dg~v~i~~~~~~~~~~~~~~----~~~~v~~~~~spdg~~lasg~~---------------------------  184 (321)
T 3ow8_A          136 YLATGTHVGKVNIFGVESGKKEYSLDT----RGKFILSIAYSPDGKYLASGAI---------------------------  184 (321)
T ss_dssp             EEEEECTTSEEEEEETTTCSEEEEEEC----SSSCEEEEEECTTSSEEEEEET---------------------------
T ss_pred             EEEEEcCCCcEEEEEcCCCceeEEecC----CCceEEEEEECCCCCEEEEEcC---------------------------
Confidence            4 4444446688888887654332211    1234678899999987776432                           


Q ss_pred             cccCCCCeEEEEeCCCCeEEEecccC-CCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEE
Q 015463          224 KITKDTGRVLKYDPTTKQTTVLLRNL-QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRT  302 (406)
Q Consensus       224 ~~~~~~g~l~~~d~~t~~~~~~~~~~-~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~  302 (406)
                           +|.|..||..+++......+. ...+.++++||++.++. ....+.|..+++...+  ....+..-.+....+++
T Consensus       185 -----dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s-~s~dg~i~iwd~~~~~--~~~~~~~h~~~v~~~~~  256 (321)
T 3ow8_A          185 -----DGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVT-ASDDGYIKIYDVQHAN--LAGTLSGHASWVLNVAF  256 (321)
T ss_dssp             -----TSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEE-ECTTSCEEEEETTTCC--EEEEECCCSSCEEEEEE
T ss_pred             -----CCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEE-EcCCCeEEEEECCCcc--eeEEEcCCCCceEEEEE
Confidence                 477999999888765444433 33578999999986644 4556778888875321  11111111122345778


Q ss_pred             CCCCCEEEEEccC
Q 015463          303 NEKGEFWVAIHCR  315 (406)
Q Consensus       303 d~~G~lwv~~~~~  315 (406)
                      .++|.+.++....
T Consensus       257 sp~~~~l~s~s~D  269 (321)
T 3ow8_A          257 CPDDTHFVSSSSD  269 (321)
T ss_dssp             CTTSSEEEEEETT
T ss_pred             CCCCCEEEEEeCC
Confidence            8899877665544

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.67  E-value=5.7e-07  Score=84.28  Aligned_cols=163  Identities=11%  Similarity=0.122  Sum_probs=106.9

Q ss_pred             CcceEEEEeCCCCcEEEEeCC-CcEEEEeCCCCeEEEcc-cccC--CcccccccceEE---cCCCCEEEE-eCCCchhhh
Q 015463          131 GRPLGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLA-TEAE--GVPLRFTNDLDI---DDEGNVYFT-DSSTNYQRR  202 (406)
Q Consensus       131 ~~p~gi~~d~~~g~L~Vad~~-~gl~~~d~~~~~~~~l~-~~~~--~~~~~~~~~l~~---d~dG~ly~t-~~~~~~~~~  202 (406)
                      .-|.++++|..++.+|+++.+ .+|.+++++++....+. ....  +.+...+.+|.+   |++|+||+. +.+..+...
T Consensus        13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~   92 (334)
T 2p9w_A           13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA   92 (334)
T ss_dssp             CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred             cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence            447789998778999999976 67999999876554431 1111  344446789999   789999994 422111100


Q ss_pred             ccccccccccccccCCCCCCCcccCCCCeEEEEeCC---CCeEEEecc--------------cCCCcceEEEecCCCEEE
Q 015463          203 QMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPT---TKQTTVLLR--------------NLQFPNGLSLSKDKSFFV  265 (406)
Q Consensus       203 ~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~---t~~~~~~~~--------------~~~~~ngi~l~~d~~~l~  265 (406)
                      ..                 +   ..+...|++||+.   +++.....+              ....+|.++++++|+ .|
T Consensus        93 g~-----------------~---~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aY  151 (334)
T 2p9w_A           93 DQ-----------------S---SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SY  151 (334)
T ss_dssp             SC-----------------C---SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EE
T ss_pred             cc-----------------c---cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC-EE
Confidence            00                 0   1234679999988   665433321              223589999999986 78


Q ss_pred             EEeCCC-CeEEEEEeeCCCCcceeeee-c------CCCCCCceEECCCCCEEEEEccCCcc
Q 015463          266 FCEGSV-GRLHKYWLIGEKAGNLEAFA-I------LPGYPDNVRTNEKGEFWVAIHCRRSL  318 (406)
Q Consensus       266 v~~t~~-~~i~~~~~~g~~~~~~~~~~-~------l~g~pd~i~~d~~G~lwv~~~~~~~~  318 (406)
                      |+++.. ..|++++.+|...   ..+. .      ..| ++||+..++|++.++....+..
T Consensus       152 Vt~s~~~~~I~rV~pdG~~~---~~~~~~~~~~~~~~G-~nGIv~~pdg~~Liv~~~~g~L  208 (334)
T 2p9w_A          152 VAFALGMPAIARVSADGKTV---STFAWESGNGGQRPG-YSGITFDPHSNKLIAFGGPRAL  208 (334)
T ss_dssp             EEEEESSCEEEEECTTSCCE---EEEEECCCCSSSCCS-CSEEEEETTTTEEEEESSSSSE
T ss_pred             EeCCCCCCeEEEEeCCCCEE---eeeeecCCCcccccC-cceEEEeCCCCEEEEEcCCCeE
Confidence            988888 8999999886422   2221 1      122 7899999999876666544443

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.65  E-value=3e-05  Score=73.97  Aligned_cols=198  Identities=13%  Similarity=0.072  Sum_probs=124.4

Q ss_pred             ccCcceEEEcCCC-CeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCC-C
Q 015463           68 IQGPESMAFDPLG-RGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT-G  143 (406)
Q Consensus        68 ~~gpe~i~~d~~g-~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~-g  143 (406)
                      -....++++.++| +.+.++..+|.|..|+..  ........                    ....+...++++.+++ .
T Consensus        73 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------------------~~h~~~v~~~~~~~~~~~  132 (383)
T 3ei3_B           73 DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQG--------------------MGPGDAITGMKFNQFNTN  132 (383)
T ss_dssp             SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECC--------------------CSTTCBEEEEEEETTEEE
T ss_pred             CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeec--------------------CCcCCceeEEEeCCCCCC
Confidence            3456789999998 788999999999999876  22221110                    0113446789998733 3


Q ss_pred             cEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCC
Q 015463          144 DLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPI  223 (406)
Q Consensus       144 ~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  223 (406)
                      .|+.+...+.|..+|.++.....+.....  ....+.++++.++|++.++.+.                           
T Consensus       133 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~---------------------------  183 (383)
T 3ei3_B          133 QLFVSSIRGATTLRDFSGSVIQVFAKTDS--WDYWYCCVDVSVSRQMLATGDS---------------------------  183 (383)
T ss_dssp             EEEEEETTTEEEEEETTSCEEEEEECCCC--SSCCEEEEEEETTTTEEEEEET---------------------------
T ss_pred             EEEEEeCCCEEEEEECCCCceEEEeccCC--CCCCeEEEEECCCCCEEEEECC---------------------------
Confidence            45566655678899988766555432211  1234778899999987766432                           


Q ss_pred             cccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCC-cceeeeecCCCCCCceEE
Q 015463          224 KITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKA-GNLEAFAILPGYPDNVRT  302 (406)
Q Consensus       224 ~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~-~~~~~~~~l~g~pd~i~~  302 (406)
                           +|.|..||........+.........++++++++.++++....+.|..+++...+. +.........+....+++
T Consensus       184 -----d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  258 (383)
T 3ei3_B          184 -----TGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYF  258 (383)
T ss_dssp             -----TSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEE
T ss_pred             -----CCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEE
Confidence                 47899999865555555444455678999999984445545567888888764221 111111122333456778


Q ss_pred             CC-CCCEEEEEccCCcch
Q 015463          303 NE-KGEFWVAIHCRRSLY  319 (406)
Q Consensus       303 d~-~G~lwv~~~~~~~~~  319 (406)
                      ++ +|.+.++........
T Consensus       259 s~~~~~~l~~~~~d~~i~  276 (383)
T 3ei3_B          259 NPTDSTKLLTTDQRNEIR  276 (383)
T ss_dssp             CTTTSCEEEEEESSSEEE
T ss_pred             cCCCCCEEEEEcCCCcEE
Confidence            88 888666655444433

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.65  E-value=3.8e-05  Score=72.38  Aligned_cols=155  Identities=6%  Similarity=-0.035  Sum_probs=98.0

Q ss_pred             CcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-EE
Q 015463           70 GPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LY  146 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-L~  146 (406)
                      ...+++++++|+.++++..+|.|..|+..  .+.......                    ........+++.+ +++ |+
T Consensus        10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~--------------------~h~~~v~~~~~~~-~~~~l~   68 (372)
T 1k8k_C           10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK--------------------EHNGQVTGVDWAP-DSNRIV   68 (372)
T ss_dssp             CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE--------------------CCSSCEEEEEEET-TTTEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeec--------------------CCCCcccEEEEeC-CCCEEE
Confidence            45788999999988889899999999865  222222111                    1124467899998 555 55


Q ss_pred             EEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCccc
Q 015463          147 IADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKIT  226 (406)
Q Consensus       147 Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~  226 (406)
                      .+...+.|..+|.++++.........  ....+.++++.++|++.++.+.                              
T Consensus        69 ~~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~------------------------------  116 (372)
T 1k8k_C           69 TCGTDRNAYVWTLKGRTWKPTLVILR--INRAARCVRWAPNEKKFAVGSG------------------------------  116 (372)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEECCC--CSSCEEEEEECTTSSEEEEEET------------------------------
T ss_pred             EEcCCCeEEEEECCCCeeeeeEEeec--CCCceeEEEECCCCCEEEEEeC------------------------------
Confidence            55555668888887775332211111  1234778899999976666432                              


Q ss_pred             CCCCeEEEEeCCCCe----EEEeccc-CCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          227 KDTGRVLKYDPTTKQ----TTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       227 ~~~g~l~~~d~~t~~----~~~~~~~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                        +|.+..||..+++    ...+... ......++++++++.++.+. ..+.|..|++.
T Consensus       117 --d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~~~d~~  172 (372)
T 1k8k_C          117 --SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS-CDFKCRIFSAY  172 (372)
T ss_dssp             --TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE-TTSCEEEEECC
T ss_pred             --CCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc-CCCCEEEEEcc
Confidence              3557666665554    2222222 23456899999998776654 45778888854

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.62  E-value=1.6e-05  Score=73.68  Aligned_cols=184  Identities=10%  Similarity=-0.028  Sum_probs=120.3

Q ss_pred             CcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEe
Q 015463           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad  149 (406)
                      ...++++.++++.+++++.+|.|..|+....+......                    ...+.+..+++++++..|+++.
T Consensus       143 ~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~--------------------~~~~~i~~~~~~~~~~~l~~~~  202 (337)
T 1gxr_A          143 ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ--------------------GHTDGASCIDISNDGTKLWTGG  202 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC--------------------CCSSCEEEEEECTTSSEEEEEE
T ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeee--------------------cccCceEEEEECCCCCEEEEEe
Confidence            34678899999988999999999999976222221111                    0124467899998334566666


Q ss_pred             CCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCC
Q 015463          150 AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDT  229 (406)
Q Consensus       150 ~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~  229 (406)
                      ..+.|..+|.++++.......     ...+..+++.++|.+.++.+.                                +
T Consensus       203 ~dg~i~~~d~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~--------------------------------~  245 (337)
T 1gxr_A          203 LDNTVRSWDLREGRQLQQHDF-----TSQIFSLGYCPTGEWLAVGME--------------------------------S  245 (337)
T ss_dssp             TTSEEEEEETTTTEEEEEEEC-----SSCEEEEEECTTSSEEEEEET--------------------------------T
T ss_pred             cCCcEEEEECCCCceEeeecC-----CCceEEEEECCCCCEEEEEcC--------------------------------C
Confidence            667799999887764432211     123677889999976665432                                3


Q ss_pred             CeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCCCCEE
Q 015463          230 GRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFW  309 (406)
Q Consensus       230 g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~lw  309 (406)
                      |.+..||..+++...+.........+++++|++.++.+. ..+.|..+++...   .........+....++++++|++.
T Consensus       246 ~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l  321 (337)
T 1gxr_A          246 SNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTG-KDNLLNAWRTPYG---ASIFQSKESSSVLSCDISVDDKYI  321 (337)
T ss_dssp             SCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTC---CEEEEEECSSCEEEEEECTTSCEE
T ss_pred             CcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEec-CCCcEEEEECCCC---eEEEEecCCCcEEEEEECCCCCEE
Confidence            679999998887666554445567899999999776554 4678888887532   111111223334567788888866


Q ss_pred             EEEcc
Q 015463          310 VAIHC  314 (406)
Q Consensus       310 v~~~~  314 (406)
                      ++...
T Consensus       322 ~~~~~  326 (337)
T 1gxr_A          322 VTGSG  326 (337)
T ss_dssp             EEEET
T ss_pred             EEecC
Confidence            65443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.62  E-value=4.2e-06  Score=80.17  Aligned_cols=76  Identities=13%  Similarity=0.205  Sum_probs=52.5

Q ss_pred             CCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCCCC
Q 015463          229 TGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE  307 (406)
Q Consensus       229 ~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~  307 (406)
                      .+.|..+|.++++......... +.+++++||++.+|++..  +.|..++.+..+......+......|.+++++++|+
T Consensus       285 ~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~--~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          285 AAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG--GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             CSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS--SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             CceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC--CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            3479999999887655443334 999999999999998763  889999865321011111122344688999999885

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=98.61  E-value=4.6e-05  Score=76.75  Aligned_cols=184  Identities=13%  Similarity=0.137  Sum_probs=114.1

Q ss_pred             cCcceEEEcCCCCeeEEEecCCEEEEEeCCc--eeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-E
Q 015463           69 QGPESMAFDPLGRGPYTGVADGRILFWDGLK--WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-L  145 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-L  145 (406)
                      ....++++.++++.+.++..+|.|..|+...  ...+.                       .....+.++++.+ +++ |
T Consensus       304 ~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~-----------------------~~~~~v~~~~~s~-~g~~l  359 (577)
T 2ymu_A          304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLT-----------------------GHSSSVWGVAFSP-DGQTI  359 (577)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEEC-----------------------CCSSCEEEEEECT-TSSEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEe-----------------------CCCCCEEEEEECC-CCCEE
Confidence            3456789999999888999999999998762  21110                       0123467889998 565 4


Q ss_pred             EEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcc
Q 015463          146 YIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKI  225 (406)
Q Consensus       146 ~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  225 (406)
                      ..+...+.+..++..+..+..+...     ...+.++++.+||+..++.+.                             
T Consensus       360 ~~~~~dg~v~~~~~~~~~~~~~~~~-----~~~v~~~~~s~dg~~l~~~~~-----------------------------  405 (577)
T 2ymu_A          360 ASASDDKTVKLWNRNGQLLQTLTGH-----SSSVRGVAFSPDGQTIASASD-----------------------------  405 (577)
T ss_dssp             EEEETTSEEEEEETTCCEEEEEECC-----SSCEEEEEECTTSSCEEEEET-----------------------------
T ss_pred             EEEeCCCEEEEEcCCCCEEEEecCC-----CCCeEEEEECCCCCEEEEEeC-----------------------------
Confidence            4555545577788765544443221     124678999999976665432                             


Q ss_pred             cCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCC
Q 015463          226 TKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEK  305 (406)
Q Consensus       226 ~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~  305 (406)
                         ++.|..||........+...-....+++++||++.+..+. ..+.|..++..+.   ....+..-.+....++++++
T Consensus       406 ---d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~d~~v~~w~~~~~---~~~~~~~~~~~v~~~~~spd  478 (577)
T 2ymu_A          406 ---DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASAS-DDKTVKLWNRNGQ---LLQTLTGHSSSVRGVAFSPD  478 (577)
T ss_dssp             ---TSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTSC---EEEEEECCSSCEEEEEECTT
T ss_pred             ---CCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEc-CCCEEEEEECCCC---EEEEEcCCCCCEEEEEEcCC
Confidence               3678888876444444433334456899999998776654 4567877775432   11122111222345778899


Q ss_pred             CCEEEEEccCCc
Q 015463          306 GEFWVAIHCRRS  317 (406)
Q Consensus       306 G~lwv~~~~~~~  317 (406)
                      |++.++......
T Consensus       479 ~~~las~~~d~~  490 (577)
T 2ymu_A          479 GQTIASASDDKT  490 (577)
T ss_dssp             SCEEEEEETTSE
T ss_pred             CCEEEEEeCCCE
Confidence            987776554433

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.61  E-value=1.5e-05  Score=77.93  Aligned_cols=96  Identities=13%  Similarity=-0.054  Sum_probs=63.2

Q ss_pred             CCCCeeEEEecC-----CEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeC--
Q 015463           78 PLGRGPYTGVAD-----GRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA--  150 (406)
Q Consensus        78 ~~g~~ly~g~~~-----g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~--  150 (406)
                      ++++.+|+....     +.|..+|....+.+...                     ..+..| +|+++++...|||++.  
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I---------------------~vG~~P-gia~SpDgk~lyVan~~~  139 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMT---------------------DGGFLP-HPVAAEDGSFFAQASTVF  139 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEE---------------------EECSSC-EEEECTTSSCEEEEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEE---------------------ECCCCC-ceEECCCCCEEEEEeccc
Confidence            466668887653     68999998733333221                     113558 9999996667999984  


Q ss_pred             --------CCcEEEEeCCCCeEEEccccc-CCc--ccccccceEEcCCC-CEEEEeC
Q 015463          151 --------YFGLMKVGPEGGLATSLATEA-EGV--PLRFTNDLDIDDEG-NVYFTDS  195 (406)
Q Consensus       151 --------~~gl~~~d~~~~~~~~l~~~~-~~~--~~~~~~~l~~d~dG-~ly~t~~  195 (406)
                              .+.|..+|..+.++..-.... ...  ....|..+++++|| .+|+++.
T Consensus       140 ~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~  196 (426)
T 3c75_H          140 ERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQF  196 (426)
T ss_dssp             EETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEEC
T ss_pred             cccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEec
Confidence                    245999999987653211111 010  12468899999999 6899863

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.61  E-value=5.9e-06  Score=80.61  Aligned_cols=197  Identities=12%  Similarity=0.081  Sum_probs=113.5

Q ss_pred             cccCcceEEEcCCCCeeEEEecC------CEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeC
Q 015463           67 QIQGPESMAFDPLGRGPYTGVAD------GRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK  140 (406)
Q Consensus        67 ~~~gpe~i~~d~~g~~ly~g~~~------g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~  140 (406)
                      +...|..++..++| ++.+...+      |+|..+|.+..+....-..+                 ....+.++.+.+.+
T Consensus       136 g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~-----------------~~~~~~~Yd~~~~p  197 (462)
T 2ece_A          136 GYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEID-----------------RGDQYLAYDFWWNL  197 (462)
T ss_dssp             CEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSB-----------------CTTCCCCCCEEEET
T ss_pred             CCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccC-----------------CCCccccceEEECC
Confidence            34579999999998 34433333      68999997733333221100                 00123355677788


Q ss_pred             CCCcEEEEeC--------------------CCcEEEEeCCCCeEEEcccccCCcccccccceEE--cCCC-CEEEEeC-C
Q 015463          141 KTGDLYIADA--------------------YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDI--DDEG-NVYFTDS-S  196 (406)
Q Consensus       141 ~~g~L~Vad~--------------------~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~--d~dG-~ly~t~~-~  196 (406)
                       +++..++..                    .+.|..+|.++++...-..  -+.....|..+.+  +++| ..|++.. +
T Consensus       198 -~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~--vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~  274 (462)
T 2ece_A          198 -PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT--LGEENRMALELRPLHDPTKLMGFINMVVS  274 (462)
T ss_dssp             -TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE--SCTTEEEEEEEEECSSTTCCEEEEEEEEE
T ss_pred             -CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe--cCCCCCccceeEeeECCCCCEEEEEEeee
Confidence             555444442                    4679999998775432111  1212234566655  8888 5777653 0


Q ss_pred             CchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec-----c-----c-----------CCCcceE
Q 015463          197 TNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL-----R-----N-----------LQFPNGL  255 (406)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-----~-----~-----------~~~~ngi  255 (406)
                      .                            ....+.|++|..+.++++...     .     .           ...+.+|
T Consensus       275 ~----------------------------~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I  326 (462)
T 2ece_A          275 L----------------------------KDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDI  326 (462)
T ss_dssp             T----------------------------TTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred             c----------------------------cCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEE
Confidence            0                            001234443333234332211     0     0           1346789


Q ss_pred             EEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeec---------------CCCCCCceEECCCCC-EEEEE
Q 015463          256 SLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI---------------LPGYPDNVRTNEKGE-FWVAI  312 (406)
Q Consensus       256 ~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~---------------l~g~pd~i~~d~~G~-lwv~~  312 (406)
                      .+|+|+++||++....+.|..|++..+...+..-...               +.|.|.++.+++||+ +||+.
T Consensus       327 ~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          327 DISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             EECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            9999999999999999999999986332111111111               224599999999998 67765

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=98.60  E-value=6.3e-05  Score=75.76  Aligned_cols=181  Identities=13%  Similarity=0.104  Sum_probs=113.2

Q ss_pred             CcceEEEcCCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-EEE
Q 015463           70 GPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYI  147 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-L~V  147 (406)
                      ...++++.++|+.+.++..+|.|..++.. +......                      .....+.++++++ +++ |..
T Consensus       346 ~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~----------------------~~~~~v~~~~~s~-dg~~l~~  402 (577)
T 2ymu_A          346 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT----------------------GHSSSVRGVAFSP-DGQTIAS  402 (577)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEE----------------------CCSSCEEEEEECT-TSSCEEE
T ss_pred             CEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEec----------------------CCCCCeEEEEECC-CCCEEEE
Confidence            44678999999988899999999988865 2211110                      0123467899998 555 555


Q ss_pred             EeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463          148 ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK  227 (406)
Q Consensus       148 ad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  227 (406)
                      +...+.|..+|..+..+..+...     ...+.++++.+|+.+.++.+.                               
T Consensus       403 ~~~d~~v~~~~~~~~~~~~~~~~-----~~~v~~~~~s~d~~~l~~~~~-------------------------------  446 (577)
T 2ymu_A          403 ASDDKTVKLWNRNGQLLQTLTGH-----SSSVWGVAFSPDDQTIASASD-------------------------------  446 (577)
T ss_dssp             EETTSEEEEECTTCCEEEEEECC-----SSCEEEEEECTTSSEEEEEET-------------------------------
T ss_pred             EeCCCEEEEEeCCCCEEEEecCC-----CCCeEEEEECCCCCEEEEEcC-------------------------------
Confidence            55556688888765544443221     124678899999987776432                               


Q ss_pred             CCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCCCC
Q 015463          228 DTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE  307 (406)
Q Consensus       228 ~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~  307 (406)
                       ++.+..||........+.........++++||++.+..+. ..+.|..++..+.   ....+..-.+-...++++++|+
T Consensus       447 -d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~-~d~~i~iw~~~~~---~~~~~~~h~~~v~~l~~s~dg~  521 (577)
T 2ymu_A          447 -DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS-DDKTVKLWNRNGQ---LLQTLTGHSSSVRGVAFSPDGQ  521 (577)
T ss_dssp             -TSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEE-TTSEEEEEETTSC---EEEEEECCSSCEEEEEECTTSS
T ss_pred             -CCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCCEEEEEcCCCC---EEEEEeCCCCCEEEEEEcCCCC
Confidence             3678888876555555443334457899999999776554 4567777775432   1112211112234567889998


Q ss_pred             EEEEEcc
Q 015463          308 FWVAIHC  314 (406)
Q Consensus       308 lwv~~~~  314 (406)
                      +.++...
T Consensus       522 ~l~s~~~  528 (577)
T 2ymu_A          522 TIASASD  528 (577)
T ss_dssp             CEEEEET
T ss_pred             EEEEEEC
Confidence            6665543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.59  E-value=5.8e-06  Score=80.67  Aligned_cols=258  Identities=10%  Similarity=0.012  Sum_probs=140.1

Q ss_pred             CCCCeeEE-EecCCEEEEEeCC----ceeEEEeecCCCccccCCCCCccccccc-CC-cCCcceEEEEeCCCCcEEEEeC
Q 015463           78 PLGRGPYT-GVADGRILFWDGL----KWTDFAFTSNNRSELCNPKPIATSYLKN-EH-ICGRPLGLRFDKKTGDLYIADA  150 (406)
Q Consensus        78 ~~g~~ly~-g~~~g~I~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~p~gi~~d~~~g~L~Vad~  150 (406)
                      .+++.+|+ +..+++|+.+|..    +.+.. ...+    .|          +. +. ...+|+++...+ +| +||+..
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~-k~ie----~~----------~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~  155 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKII-KVIE----PE----------EVKKVSGYSRLHTVHCGP-DA-IYISAL  155 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEE-EEEC----HH----------HHHHHHCEEEEEEEEECS-SC-EEEEEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceee-eeec----hh----------hcccccCCCcccceeECC-Ce-EEEEcC
Confidence            56676776 4667899999854    11111 1110    00          00 01 124799999998 77 999765


Q ss_pred             C-------CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeC-CCchhhhccccccccccccccCCCCCC
Q 015463          151 Y-------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDS-STNYQRRQMQKENIPLQLCSSLNDPSP  222 (406)
Q Consensus       151 ~-------~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~-~~~~~~~~~~~~~~~~~~~~e~~~~~~  222 (406)
                      +       +++..+|.++.++..-... ++.+..+..++-..+++++.++.. ..-.....    |-...++ +      
T Consensus       156 g~~~g~~~g~v~vlD~~T~~v~~~~~~-~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~----g~~~~~~-~------  223 (462)
T 2ece_A          156 GNEEGEGPGGILMLDHYSFEPLGKWEI-DRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIED----GLKLEHL-K------  223 (462)
T ss_dssp             EETTSCSCCEEEEECTTTCCEEEECCS-BCTTCCCCCCEEEETTTTEEEECBCCCHHHHTT----CCCTTTH-H------
T ss_pred             CCcCCCCCCeEEEEECCCCeEEEEEcc-CCCCccccceEEECCCCCEEEEccCcCcccccc----ccchhhh-h------
Confidence            4       3799999998775432221 222344567788889988666652 10000000    0000000 0      


Q ss_pred             CcccCCCCeEEEEeCCCCeEEEeccc---CCCcceEEE--ecCCCEEEEEeC-----CCCeEEEEEeeCCCCcceeee--
Q 015463          223 IKITKDTGRVLKYDPTTKQTTVLLRN---LQFPNGLSL--SKDKSFFVFCEG-----SVGRLHKYWLIGEKAGNLEAF--  290 (406)
Q Consensus       223 ~~~~~~~g~l~~~d~~t~~~~~~~~~---~~~~ngi~l--~~d~~~l~v~~t-----~~~~i~~~~~~g~~~~~~~~~--  290 (406)
                         .....+|..||.++++...-..-   -..|..|.+  +||++..|++..     ..+.|+++..++.......++  
T Consensus       224 ---~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi  300 (462)
T 2ece_A          224 ---DRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEI  300 (462)
T ss_dssp             ---HHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEE
T ss_pred             ---hccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeC
Confidence               12357899999988764432221   134566766  999999999876     678888877653211111111  


Q ss_pred             -----e-cC----------CCCCCceEECCCCC-EEEEEccCCcchhhhhhcChhhhhhhhccCcccee--ee---eEee
Q 015463          291 -----A-IL----------PGYPDNVRTNEKGE-FWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKT--HY---LIHV  348 (406)
Q Consensus       291 -----~-~l----------~g~pd~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~---~~~~  348 (406)
                           . .+          ++.|..|.+++||+ |||+......+....+. .+...+++.+++.....  +.   ...+
T Consensus       301 ~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~-d~~~~~lv~~I~tGG~~~~~~~~~G~~~  379 (462)
T 2ece_A          301 PAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS-NPFKPVLTGKVKLGGIFHRADHPAGHKL  379 (462)
T ss_dssp             CCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS-STTSCEEEEEEECBTTTTCBCCTTSCCC
T ss_pred             CCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec-CCCCcEEEEEEEeCCeeccccccccccC
Confidence                 0 11          25688999999998 89998765444332222 23233444444332100  00   0000


Q ss_pred             cCcceEEEEEECCCCCEEEEEE
Q 015463          349 GGRLHAMAVKYSPEGKILQVLE  370 (406)
Q Consensus       349 ~~~~~~~v~~~d~~g~~~~~~~  370 (406)
                      .+.++  -++++++|+.+.+-+
T Consensus       380 ~ggPr--~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          380 TGAPQ--MLEISRDGRRVYVTN  399 (462)
T ss_dssp             CSCCC--CEEECTTSSEEEEEC
T ss_pred             CCCCC--EEEEcCCCCEEEEEc
Confidence            00122  356789998887754

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.58  E-value=3e-05  Score=75.64  Aligned_cols=143  Identities=13%  Similarity=0.111  Sum_probs=91.6

Q ss_pred             CcceEEEEeCCCCc-EEEEeCCC---cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccc
Q 015463          131 GRPLGLRFDKKTGD-LYIADAYF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQ  205 (406)
Q Consensus       131 ~~p~gi~~d~~~g~-L~Vad~~~---gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~  205 (406)
                      .....+++++ +|+ |..+....   .|+.+|.++++...+... .    ..+..+++.+||+ |+++.+.         
T Consensus       179 ~~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~-~----~~~~~~~~spdg~~la~~~~~---------  243 (415)
T 2hqs_A          179 QPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASF-P----RHNGAPAFSPDGSKLAFALSK---------  243 (415)
T ss_dssp             SCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEEEECC-S----SCEEEEEECTTSSEEEEEECT---------
T ss_pred             CcceeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCcEEEeecC-C----CcccCEEEcCCCCEEEEEEec---------
Confidence            3456789999 565 55554433   699999998876654322 1    2466889999997 5555432         


Q ss_pred             cccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCC--CeEEEEEeeCCC
Q 015463          206 KENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEK  283 (406)
Q Consensus       206 ~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~--~~i~~~~~~g~~  283 (406)
                                           .....|+.+|.++++...+.........++++||++.++++....  .+|+.+++.+.+
T Consensus       244 ---------------------~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~  302 (415)
T 2hqs_A          244 ---------------------TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA  302 (415)
T ss_dssp             ---------------------TSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred             ---------------------CCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC
Confidence                                 123469999999888776654444556789999999887776432  378888876432


Q ss_pred             CcceeeeecCCCCCCceEECCCCCEEEEE
Q 015463          284 AGNLEAFAILPGYPDNVRTNEKGEFWVAI  312 (406)
Q Consensus       284 ~~~~~~~~~l~g~pd~i~~d~~G~lwv~~  312 (406)
                         ...+....+....++++++|+..+..
T Consensus       303 ---~~~l~~~~~~~~~~~~spdG~~l~~~  328 (415)
T 2hqs_A          303 ---PQRITWEGSQNQDADVSSDGKFMVMV  328 (415)
T ss_dssp             ---CEECCCSSSEEEEEEECTTSSEEEEE
T ss_pred             ---EEEEecCCCcccCeEECCCCCEEEEE
Confidence               22221111223356788999854443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.58  E-value=3.3e-06  Score=82.64  Aligned_cols=224  Identities=11%  Similarity=0.008  Sum_probs=122.6

Q ss_pred             cCcceEEEcCCCCeeEEEec----------CCEEEEEeCCceeEEEeec-CCCccccCCCCCcccccccCCcCCcceEEE
Q 015463           69 QGPESMAFDPLGRGPYTGVA----------DGRILFWDGLKWTDFAFTS-NNRSELCNPKPIATSYLKNEHICGRPLGLR  137 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~----------~g~I~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~  137 (406)
                      ..| +|++++||+.+|++..          ++.|..+|....+...... .+.              ........|.+++
T Consensus       119 ~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~--------------~r~~~g~~P~~~~  183 (426)
T 3c75_H          119 FLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDA--------------PRFLVGTYQWMNA  183 (426)
T ss_dssp             SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC--------------CCCCBSCCGGGSE
T ss_pred             CCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCc--------------cccccCCCcceEE
Confidence            368 9999999999999863          5679999887322221110 000              0001135689999


Q ss_pred             EeCCCCcEEEEeCC--CcEEEEeCCCCeEEEcccccCCcccccccc----eEEcCCCCEEEEeCCCchhh----hccccc
Q 015463          138 FDKKTGDLYIADAY--FGLMKVGPEGGLATSLATEAEGVPLRFTND----LDIDDEGNVYFTDSSTNYQR----RQMQKE  207 (406)
Q Consensus       138 ~d~~~g~L~Vad~~--~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~----l~~d~dG~ly~t~~~~~~~~----~~~~~~  207 (406)
                      ++++...|||+...  +.|..+|..++++..-.. ..+.....+.+    ++..++|++.+-+.....-.    ..+...
T Consensus       184 ~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~-v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~  262 (426)
T 3c75_H          184 LTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLD-VPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTE  262 (426)
T ss_dssp             ECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE-CCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCT
T ss_pred             EcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEE-cCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccC
Confidence            99955679999853  579999999887542111 11111112222    56667886555443211000    000000


Q ss_pred             ccccccccc-CCCCCCCcccCCCCeEEEEeCCCCeEEEecc-------c---CCCcce---EEEecCCCEEEEEeCC---
Q 015463          208 NIPLQLCSS-LNDPSPIKITKDTGRVLKYDPTTKQTTVLLR-------N---LQFPNG---LSLSKDKSFFVFCEGS---  270 (406)
Q Consensus       208 ~~~~~~~~e-~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~-------~---~~~~ng---i~l~~d~~~l~v~~t~---  270 (406)
                      ..++..... ..+...++.....|.++.+|..++.......       .   ...|.|   +++++|++.+|++...   
T Consensus       263 ~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~  342 (426)
T 3c75_H          263 DELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDE  342 (426)
T ss_dssp             TSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCT
T ss_pred             CCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccc
Confidence            000000000 0111222223345678888876555433211       0   012333   8999999999998631   


Q ss_pred             ------CCeEEEEEeeCCCCcceeeee--cCCCCCCceEECCCCC-EEEEEc
Q 015463          271 ------VGRLHKYWLIGEKAGNLEAFA--ILPGYPDNVRTNEKGE-FWVAIH  313 (406)
Q Consensus       271 ------~~~i~~~~~~g~~~~~~~~~~--~l~g~pd~i~~d~~G~-lwv~~~  313 (406)
                            .+.|++++.+..     ++..  .+++.|.++++++||+ +|...+
T Consensus       343 gthk~~s~~VsVID~~T~-----kvv~~I~vg~~P~gia~spDg~~~lyv~n  389 (426)
T 3c75_H          343 WKHKAASRFVVVLNAETG-----ERINKIELGHEIDSINVSQDAEPLLYALS  389 (426)
T ss_dssp             TCTTSCEEEEEEEETTTC-----CEEEEEEEEEEECEEEECCSSSCEEEEEE
T ss_pred             ccccCCCCEEEEEECCCC-----eEEEEEECCCCcCeEEEccCCCEEEEEEc
Confidence                  347999986532     2222  2345699999999998 666655

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.56  E-value=1.9e-05  Score=71.42  Aligned_cols=146  Identities=13%  Similarity=0.109  Sum_probs=90.9

Q ss_pred             CcceEEEEeCCCCcEEEEeCCCcEEEEeCCC-CeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccc
Q 015463          131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEG-GLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENI  209 (406)
Q Consensus       131 ~~p~gi~~d~~~g~L~Vad~~~gl~~~d~~~-~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~  209 (406)
                      +.+.++++++ +|+.++......|+.+|.++ ++...+...   .....+.++++.++|+..+.....            
T Consensus        42 ~~v~~~~~sp-dg~~l~~~~~~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~spdg~~l~~~~~~------------  105 (297)
T 2ojh_A           42 ELFEAPNWSP-DGKYLLLNSEGLLYRLSLAGDPSPEKVDTG---FATICNNDHGISPDGALYAISDKV------------  105 (297)
T ss_dssp             SCCEEEEECT-TSSEEEEEETTEEEEEESSSCCSCEECCCT---TCCCBCSCCEECTTSSEEEEEECT------------
T ss_pred             cceEeeEECC-CCCEEEEEcCCeEEEEeCCCCCCceEeccc---cccccccceEECCCCCEEEEEEeC------------
Confidence            3466889999 67755555567899999988 766554322   112356789999999755554310            


Q ss_pred             cccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCC--eEEEEEeeCCCCcce
Q 015463          210 PLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVG--RLHKYWLIGEKAGNL  287 (406)
Q Consensus       210 ~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~--~i~~~~~~g~~~~~~  287 (406)
                                      ......|+.++..+++...+... .....+++++|++.++++....+  +||.+++.+   +..
T Consensus       106 ----------------~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~---~~~  165 (297)
T 2ojh_A          106 ----------------EFGKSAIYLLPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS---GVE  165 (297)
T ss_dssp             ----------------TTSSCEEEEEETTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTT---CCE
T ss_pred             ----------------CCCcceEEEEECCCCceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCC---Ccc
Confidence                            11236799999887776555433 23667899999998876554344  455555442   222


Q ss_pred             eeeecCCCCCCceEECCCCC-EEEEE
Q 015463          288 EAFAILPGYPDNVRTNEKGE-FWVAI  312 (406)
Q Consensus       288 ~~~~~l~g~pd~i~~d~~G~-lwv~~  312 (406)
                      ..+....+....+..+++|+ ++++.
T Consensus       166 ~~~~~~~~~~~~~~~s~dg~~l~~~~  191 (297)
T 2ojh_A          166 TRLTHGEGRNDGPDYSPDGRWIYFNS  191 (297)
T ss_dssp             EECCCSSSCEEEEEECTTSSEEEEEE
T ss_pred             eEcccCCCccccceECCCCCEEEEEe
Confidence            22322333445677888998 44444

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.55  E-value=2e-05  Score=75.30  Aligned_cols=215  Identities=13%  Similarity=0.091  Sum_probs=118.1

Q ss_pred             CCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCCCcEEEE
Q 015463           79 LGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKV  157 (406)
Q Consensus        79 ~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~~gl~~~  157 (406)
                      ++. +|+++.++.|+.+|.+ .-.........                  .....|   .++  ++.+|+++..++|+.+
T Consensus       103 ~~~-v~v~~~~g~l~a~d~~tG~~~W~~~~~~------------------~~~~~p---~~~--~~~v~v~~~~g~l~~~  158 (376)
T 3q7m_A          103 GGH-VYIGSEKAQVYALNTSDGTVAWQTKVAG------------------EALSRP---VVS--DGLVLIHTSNGQLQAL  158 (376)
T ss_dssp             TTE-EEEEETTSEEEEEETTTCCEEEEEECSS------------------CCCSCC---EEE--TTEEEEECTTSEEEEE
T ss_pred             CCE-EEEEcCCCEEEEEECCCCCEEEEEeCCC------------------ceEcCC---EEE--CCEEEEEcCCCeEEEE
Confidence            454 9999999999999976 22222211100                  001223   233  6899999877789999


Q ss_pred             eCCCCeEEEcccccCCcc--cccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEE
Q 015463          158 GPEGGLATSLATEAEGVP--LRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKY  235 (406)
Q Consensus       158 d~~~~~~~~l~~~~~~~~--~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~  235 (406)
                      |+++|+..-.... ....  .......+++ +|.+|++...                                 |.|+.+
T Consensus       159 d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~-~~~v~~g~~~---------------------------------g~l~~~  203 (376)
T 3q7m_A          159 NEADGAVKWTVNL-DMPSLSLRGESAPTTA-FGAAVVGGDN---------------------------------GRVSAV  203 (376)
T ss_dssp             ETTTCCEEEEEEC-CC-----CCCCCCEEE-TTEEEECCTT---------------------------------TEEEEE
T ss_pred             ECCCCcEEEEEeC-CCCceeecCCCCcEEE-CCEEEEEcCC---------------------------------CEEEEE
Confidence            9988764321111 1111  1111223344 6788887642                                 679999


Q ss_pred             eCCCCeEEEecccCCCc-------------ceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee-cCCCCCCceE
Q 015463          236 DPTTKQTTVLLRNLQFP-------------NGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPGYPDNVR  301 (406)
Q Consensus       236 d~~t~~~~~~~~~~~~~-------------ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~-~l~g~pd~i~  301 (406)
                      |+++|+..-.... ..+             ....+  ++..+|+.. ..+.+..++.+.   ++. .+. ...+ ...+.
T Consensus       204 d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~-~~g~l~~~d~~t---G~~-~w~~~~~~-~~~~~  274 (376)
T 3q7m_A          204 LMEQGQMIWQQRI-SQATGSTEIDRLSDVDTTPVV--VNGVVFALA-YNGNLTALDLRS---GQI-MWKRELGS-VNDFI  274 (376)
T ss_dssp             ETTTCCEEEEEEC-CC-----------CCCCCCEE--ETTEEEEEC-TTSCEEEEETTT---CCE-EEEECCCC-EEEEE
T ss_pred             ECCCCcEEEEEec-ccCCCCcccccccccCCCcEE--ECCEEEEEe-cCcEEEEEECCC---CcE-EeeccCCC-CCCce
Confidence            9988876432211 111             11122  244676664 457888888652   221 121 1211 23344


Q ss_pred             ECCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECC-CCCEEEEEECCCCCeeece
Q 015463          302 TNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSP-EGKILQVLEDSKGKVVKAI  380 (406)
Q Consensus       302 ~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~g~~~~~~  380 (406)
                      .+ ++++|+++..+                                       .++++|+ +|+.+.......+.   ..
T Consensus       275 ~~-~~~l~~~~~~g---------------------------------------~l~~~d~~tG~~~w~~~~~~~~---~~  311 (376)
T 3q7m_A          275 VD-GNRIYLVDQND---------------------------------------RVMALTIDGGVTLWTQSDLLHR---LL  311 (376)
T ss_dssp             EE-TTEEEEEETTC---------------------------------------CEEEEETTTCCEEEEECTTTTS---CC
T ss_pred             EE-CCEEEEEcCCC---------------------------------------eEEEEECCCCcEEEeecccCCC---cc
Confidence            43 67899988643                                       1667775 47776665422222   22


Q ss_pred             eEEEEeCCEEEEecCCCCeEEEEeC
Q 015463          381 SEVEEKDGKLWMGSVLMPFVAVYDL  405 (406)
Q Consensus       381 s~~~~~~g~Ly~Gs~~~~~i~~~~~  405 (406)
                      +.....+++||+++. ...|..+|.
T Consensus       312 ~~~~~~~~~l~v~~~-~g~l~~~d~  335 (376)
T 3q7m_A          312 TSPVLYNGNLVVGDS-EGYLHWINV  335 (376)
T ss_dssp             CCCEEETTEEEEECT-TSEEEEEET
T ss_pred             cCCEEECCEEEEEeC-CCeEEEEEC
Confidence            233346788888876 456777764

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.52  E-value=0.0001  Score=69.38  Aligned_cols=196  Identities=11%  Similarity=0.052  Sum_probs=115.5

Q ss_pred             ccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC
Q 015463           64 FLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (406)
Q Consensus        64 ~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g  143 (406)
                      +.+......++++.++|+.+.+++.+|.|..|+...........                    ........+++.+ ++
T Consensus        51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~--------------------~~~~~v~~~~~s~-~~  109 (340)
T 1got_B           51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIP--------------------LRSSWVMTCAYAP-SG  109 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE--------------------CSSSCEEEEEECT-TS
T ss_pred             ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEee--------------------cCCccEEEEEECC-CC
Confidence            34555566889999999989999999999999865211111110                    0123356789998 56


Q ss_pred             cE-EEEeCCCcEEEEeCCCCe--EEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCC
Q 015463          144 DL-YIADAYFGLMKVGPEGGL--ATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDP  220 (406)
Q Consensus       144 ~L-~Vad~~~gl~~~d~~~~~--~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~  220 (406)
                      ++ ..+...+.+..++..++.  .+.... ..+. ...+..+.+.+++.+..+..                         
T Consensus       110 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~~-~~~h-~~~v~~~~~~~~~~l~s~s~-------------------------  162 (340)
T 1got_B          110 NYVACGGLDNICSIYNLKTREGNVRVSRE-LAGH-TGYLSCCRFLDDNQIVTSSG-------------------------  162 (340)
T ss_dssp             SEEEEEETTCEEEEEETTTCSBSCEEEEE-EECC-SSCEEEEEEEETTEEEEEET-------------------------
T ss_pred             CEEEEEeCCCeEEEEECccCCCcceeEEE-ecCC-CccEEEEEECCCCcEEEEEC-------------------------
Confidence            54 445555667788876542  111110 0110 12355666666776544432                         


Q ss_pred             CCCcccCCCCeEEEEeCCCCeEEEecccC-CCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCc
Q 015463          221 SPIKITKDTGRVLKYDPTTKQTTVLLRNL-QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDN  299 (406)
Q Consensus       221 ~~~~~~~~~g~l~~~d~~t~~~~~~~~~~-~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~  299 (406)
                              ++.+..||..+++......+. .....++++|+++.++ +....+.|..+++....  ....+..-.+....
T Consensus       163 --------d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-sg~~d~~v~~wd~~~~~--~~~~~~~h~~~v~~  231 (340)
T 1got_B          163 --------DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV-SGACDASAKLWDVREGM--CRQTFTGHESDINA  231 (340)
T ss_dssp             --------TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE-EEETTSCEEEEETTTCS--EEEEECCCSSCEEE
T ss_pred             --------CCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEE-EEeCCCcEEEEECCCCe--eEEEEcCCcCCEEE
Confidence                    367999999888765443332 3456889999998654 44456788888865321  11122111222345


Q ss_pred             eEECCCCCEEEEEccCCcc
Q 015463          300 VRTNEKGEFWVAIHCRRSL  318 (406)
Q Consensus       300 i~~d~~G~lwv~~~~~~~~  318 (406)
                      ++++++|++.++......+
T Consensus       232 v~~~p~~~~l~s~s~d~~v  250 (340)
T 1got_B          232 ICFFPNGNAFATGSDDATC  250 (340)
T ss_dssp             EEECTTSSEEEEEETTSCE
T ss_pred             EEEcCCCCEEEEEcCCCcE
Confidence            7788999877766554443

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.52  E-value=3.9e-05  Score=72.32  Aligned_cols=184  Identities=11%  Similarity=0.035  Sum_probs=117.2

Q ss_pred             cceEEEcCCCCeeEEEecCCEEEEEeCC-c---eeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEE
Q 015463           71 PESMAFDPLGRGPYTGVADGRILFWDGL-K---WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (406)
Q Consensus        71 pe~i~~d~~g~~ly~g~~~g~I~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~  146 (406)
                      ..++++.++|+.+.++..++.|..|+.. .   ........                    ...+....+.+.+ ++.+.
T Consensus       100 v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~--------------------~h~~~v~~~~~~~-~~~l~  158 (340)
T 1got_B          100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA--------------------GHTGYLSCCRFLD-DNQIV  158 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEE--------------------CCSSCEEEEEEEE-TTEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEec--------------------CCCccEEEEEECC-CCcEE
Confidence            4577899999988899999999999865 1   11111110                    0123355677777 77888


Q ss_pred             EEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCccc
Q 015463          147 IADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKIT  226 (406)
Q Consensus       147 Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~  226 (406)
                      .+...+.|..+|.++++........    ...+.++++.++|+++++.+.                              
T Consensus       159 s~s~d~~i~~wd~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~sg~~------------------------------  204 (340)
T 1got_B          159 TSSGDTTCALWDIETGQQTTTFTGH----TGDVMSLSLAPDTRLFVSGAC------------------------------  204 (340)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCC----SSCEEEEEECTTSSEEEEEET------------------------------
T ss_pred             EEECCCcEEEEECCCCcEEEEEcCC----CCceEEEEECCCCCEEEEEeC------------------------------
Confidence            8877778999999887643322111    124678999999988877532                              


Q ss_pred             CCCCeEEEEeCCCCeEEEeccc-CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCC---CCceEE
Q 015463          227 KDTGRVLKYDPTTKQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGY---PDNVRT  302 (406)
Q Consensus       227 ~~~g~l~~~d~~t~~~~~~~~~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~---pd~i~~  302 (406)
                        +|.+..||..+++......+ ....+.++++|+++.+..+. ..+.|..+++...+  ....+. ....   ...+++
T Consensus       205 --d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~d~~v~iwd~~~~~--~~~~~~-~~~~~~~v~~~~~  278 (340)
T 1got_B          205 --DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS-DDATCRLFDLRADQ--ELMTYS-HDNIICGITSVSF  278 (340)
T ss_dssp             --TSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTE--EEEEEC-CTTCCSCEEEEEE
T ss_pred             --CCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEc-CCCcEEEEECCCCc--EEEEEc-cCCcccceEEEEE
Confidence              47799999887765443332 33457899999998765554 45778888865321  111121 1111   234678


Q ss_pred             CCCCCEEEEEccC
Q 015463          303 NEKGEFWVAIHCR  315 (406)
Q Consensus       303 d~~G~lwv~~~~~  315 (406)
                      +++|++.++....
T Consensus       279 s~~g~~l~~g~~d  291 (340)
T 1got_B          279 SKSGRLLLAGYDD  291 (340)
T ss_dssp             CTTSSEEEEEETT
T ss_pred             CCCCCEEEEECCC
Confidence            8999877665443

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=98.52  E-value=5.3e-05  Score=70.99  Aligned_cols=185  Identities=14%  Similarity=0.094  Sum_probs=117.7

Q ss_pred             CcceEEEcCCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-EEE
Q 015463           70 GPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYI  147 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-L~V  147 (406)
                      ...++++.++|+.+.+++.+|.|..|+.. ........                     ........+++++ +|+ |..
T Consensus       124 ~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~---------------------~~~~~v~~~~~sp-dg~~las  181 (321)
T 3ow8_A          124 DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD---------------------TRGKFILSIAYSP-DGKYLAS  181 (321)
T ss_dssp             CCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEE---------------------CSSSCEEEEEECT-TSSEEEE
T ss_pred             cEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEec---------------------CCCceEEEEEECC-CCCEEEE
Confidence            34578999999989999999999999876 22211111                     0123356889998 565 555


Q ss_pred             EeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463          148 ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK  227 (406)
Q Consensus       148 ad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  227 (406)
                      +...+.|..+|..+++.......    ....+.++++.++|.+.++.+.                               
T Consensus       182 g~~dg~i~iwd~~~~~~~~~~~~----h~~~v~~l~~spd~~~l~s~s~-------------------------------  226 (321)
T 3ow8_A          182 GAIDGIINIFDIATGKLLHTLEG----HAMPIRSLTFSPDSQLLVTASD-------------------------------  226 (321)
T ss_dssp             EETTSCEEEEETTTTEEEEEECC----CSSCCCEEEECTTSCEEEEECT-------------------------------
T ss_pred             EcCCCeEEEEECCCCcEEEEEcc----cCCceeEEEEcCCCCEEEEEcC-------------------------------
Confidence            55556688999988764322111    1124678999999988777543                               


Q ss_pred             CCCeEEEEeCCCCeEEEeccc-CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCCC
Q 015463          228 DTGRVLKYDPTTKQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKG  306 (406)
Q Consensus       228 ~~g~l~~~d~~t~~~~~~~~~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G  306 (406)
                       +|.+..||..+++......+ ......++++||++.++.+. ..+.|..+++...+  ....+..-.+....++++++|
T Consensus       227 -dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s-~D~~v~iwd~~~~~--~~~~~~~h~~~v~~v~~s~~g  302 (321)
T 3ow8_A          227 -DGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSS-SDKSVKVWDVGTRT--CVHTFFDHQDQVWGVKYNGNG  302 (321)
T ss_dssp             -TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTE--EEEEECCCSSCEEEEEECTTS
T ss_pred             -CCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCE--EEEEEcCCCCcEEEEEECCCC
Confidence             46788999887765443333 23356899999998765554 45778888865321  111221112223456788888


Q ss_pred             CEEEEEccC
Q 015463          307 EFWVAIHCR  315 (406)
Q Consensus       307 ~lwv~~~~~  315 (406)
                      ...++....
T Consensus       303 ~~l~s~~~d  311 (321)
T 3ow8_A          303 SKIVSVGDD  311 (321)
T ss_dssp             SEEEEEETT
T ss_pred             CEEEEEeCC
Confidence            877665543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.51  E-value=0.00017  Score=69.26  Aligned_cols=189  Identities=10%  Similarity=-0.000  Sum_probs=104.8

Q ss_pred             cCcceEEEcCCCCeeEEEec----------CCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEE
Q 015463           69 QGPESMAFDPLGRGPYTGVA----------DGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRF  138 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~----------~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~  138 (406)
                      .+| .+++++||+.+|+...          ++.|..+|....+..........             ........|.++++
T Consensus        67 ~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~-------------~~~~~g~~p~~~~~  132 (373)
T 2mad_H           67 FLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDA-------------PRFDVGPYSWMNAN  132 (373)
T ss_pred             CCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCc-------------cccccCCCccceEE
Confidence            468 9999999998999852          46788998763222221110000             00001245889999


Q ss_pred             eCCCCcEEEEeCC--CcEEEEeCCCCeEEEc-ccccCCcccccccceEEcCCC-CEEEEeCCCchhhhcccccccccccc
Q 015463          139 DKKTGDLYIADAY--FGLMKVGPEGGLATSL-ATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRQMQKENIPLQLC  214 (406)
Q Consensus       139 d~~~g~L~Vad~~--~gl~~~d~~~~~~~~l-~~~~~~~~~~~~~~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~  214 (406)
                      +++...||++...  +.|..+| +++++... ..        .+.++.+.++| +.|++.+.                  
T Consensus       133 spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~--------~~~~~~~~~~~~~~~~~~~~------------------  185 (373)
T 2mad_H          133 TPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS--------SPTCYHIHPGAPSTFYLLCA------------------  185 (373)
T ss_pred             CCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC--------CCceEEEEeCCCceEEEEcC------------------
Confidence            9966679999753  5699999 88865321 11        11223344444 56666432                  


Q ss_pred             ccCCCCCCCcccCCCCeEEEEeCCCCeEEEecc-----cCCCc--ceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcce
Q 015463          215 SSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLR-----NLQFP--NGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNL  287 (406)
Q Consensus       215 ~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~-----~~~~~--ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~  287 (406)
                                    +|.+..+|. +++......     .-..+  ...++++++..+|+.. ..+.++.++..+......
T Consensus       186 --------------dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~  249 (373)
T 2mad_H          186 --------------QGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNK  249 (373)
T ss_pred             --------------CCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEe
Confidence                          477888888 665442111     00111  1234556666666654 356888888764321111


Q ss_pred             eeee-------cCCCCCCc---eEECCCCC-EEEEEcc
Q 015463          288 EAFA-------ILPGYPDN---VRTNEKGE-FWVAIHC  314 (406)
Q Consensus       288 ~~~~-------~l~g~pd~---i~~d~~G~-lwv~~~~  314 (406)
                      ..+.       ...-.|++   ++++++|+ +||+...
T Consensus       250 ~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~  287 (373)
T 2mad_H          250 APIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSE  287 (373)
T ss_pred             eeeeecCCcccccceecCceEeEEECCCCCEEEEEecc
Confidence            1111       00113565   77888866 8998753

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.50  E-value=2.6e-05  Score=69.98  Aligned_cols=153  Identities=17%  Similarity=0.151  Sum_probs=102.7

Q ss_pred             ccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecc--cCCCcce
Q 015463          177 RFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLR--NLQFPNG  254 (406)
Q Consensus       177 ~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~--~~~~~ng  254 (406)
                      .+..+|.++. +.+|+++..                              .+...|.++|++++++..-..  ...+..|
T Consensus        21 ~ftqGL~~~~-~~LyestG~------------------------------~g~S~v~~vD~~tgkv~~~~~l~~~~fgeG   69 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGE------------------------------TGRSSVRKVDLETGRILQRAEVPPPYFGAG   69 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECC------------------------------TTSCEEEEEETTTCCEEEEEECCTTCCEEE
T ss_pred             cccccEEEEC-CEEEEECCC------------------------------CCCceEEEEECCCCCEEEEEeCCCCcceeE
Confidence            4677888885 899999842                              123579999999998765432  3334456


Q ss_pred             EEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCCCCEEEEEccCCcchhhhhhcChhhhhhhh
Q 015463          255 LSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLL  334 (406)
Q Consensus       255 i~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~  334 (406)
                      +++  +++.+|+.....+.+++|+.+..+  ....+ ..++.+-+++.| .+++|++..+.                   
T Consensus        70 i~~--~~~~ly~ltw~~~~v~v~D~~tl~--~~~ti-~~~~~Gwglt~d-g~~L~vSdgs~-------------------  124 (243)
T 3mbr_X           70 IVA--WRDRLIQLTWRNHEGFVYDLATLT--PRARF-RYPGEGWALTSD-DSHLYMSDGTA-------------------  124 (243)
T ss_dssp             EEE--ETTEEEEEESSSSEEEEEETTTTE--EEEEE-ECSSCCCEEEEC-SSCEEEECSSS-------------------
T ss_pred             EEE--eCCEEEEEEeeCCEEEEEECCcCc--EEEEE-eCCCCceEEeeC-CCEEEEECCCC-------------------
Confidence            655  567899998888899999965311  11111 234556677765 35799987432                   


Q ss_pred             ccCccceeeeeEeecCcceEEEEEECCC-CCEEEEEEC-CCCCeeeceeEEEEeCCEEEEecCCCCeEEEEeC
Q 015463          335 KLPISAKTHYLIHVGGRLHAMAVKYSPE-GKILQVLED-SKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDL  405 (406)
Q Consensus       335 ~l~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~~-~~g~~~~~~s~~~~~~g~Ly~Gs~~~~~i~~~~~  405 (406)
                                          .+..+|++ .+++....- .+|..+.....+...+|+||...+..+.|.++|.
T Consensus       125 --------------------~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp  177 (243)
T 3mbr_X          125 --------------------VIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDP  177 (243)
T ss_dssp             --------------------EEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTEEEEECT
T ss_pred             --------------------eEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCeEEEEEC
Confidence                                25667876 455555542 2445555555665679999999999999999986

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.49  E-value=1.3e-05  Score=72.68  Aligned_cols=153  Identities=16%  Similarity=0.121  Sum_probs=101.3

Q ss_pred             ccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecc--cCCCcce
Q 015463          177 RFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLR--NLQFPNG  254 (406)
Q Consensus       177 ~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~--~~~~~ng  254 (406)
                      .|..+|.++ +|.||+++..                              .+...|.++|++++++..-..  .-.+..|
T Consensus        43 ~ftqGL~~~-~~~LyestG~------------------------------~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeG   91 (262)
T 3nol_A           43 AFTEGFFYR-NGYFYESTGL------------------------------NGRSSIRKVDIESGKTLQQIELGKRYFGEG   91 (262)
T ss_dssp             CEEEEEEEE-TTEEEEEEEE------------------------------TTEEEEEEECTTTCCEEEEEECCTTCCEEE
T ss_pred             cccceEEEE-CCEEEEECCC------------------------------CCCceEEEEECCCCcEEEEEecCCccceeE
Confidence            356788888 7899999842                              112479999999998755432  2234455


Q ss_pred             EEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCCCCEEEEEccCCcchhhhhhcChhhhhhhh
Q 015463          255 LSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLL  334 (406)
Q Consensus       255 i~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~  334 (406)
                      +++  +++.+|++....+.+++|+.+..+.  ...+ ..++.+.+++.| .+.+|++....                   
T Consensus        92 it~--~g~~ly~ltw~~~~v~v~D~~t~~~--~~ti-~~~~eG~glt~d-g~~L~~SdGs~-------------------  146 (262)
T 3nol_A           92 ISD--WKDKIVGLTWKNGLGFVWNIRNLRQ--VRSF-NYDGEGWGLTHN-DQYLIMSDGTP-------------------  146 (262)
T ss_dssp             EEE--ETTEEEEEESSSSEEEEEETTTCCE--EEEE-ECSSCCCCEEEC-SSCEEECCSSS-------------------
T ss_pred             EEE--eCCEEEEEEeeCCEEEEEECccCcE--EEEE-ECCCCceEEecC-CCEEEEECCCC-------------------
Confidence            655  5778999987788999999753211  1111 234455677765 35689886422                   


Q ss_pred             ccCccceeeeeEeecCcceEEEEEECCC-CCEEEEEEC-CCCCeeeceeEEEEeCCEEEEecCCCCeEEEEeC
Q 015463          335 KLPISAKTHYLIHVGGRLHAMAVKYSPE-GKILQVLED-SKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDL  405 (406)
Q Consensus       335 ~l~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~~-~~g~~~~~~s~~~~~~g~Ly~Gs~~~~~i~~~~~  405 (406)
                                          .+..+|++ .+++....- .+|..+..+..+...+|+||+..+..+.|.++|.
T Consensus       147 --------------------~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp  199 (262)
T 3nol_A          147 --------------------VLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKIVRIDP  199 (262)
T ss_dssp             --------------------EEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEECT
T ss_pred             --------------------eEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEccCCeEEEEEC
Confidence                                26667877 566666543 2345444444555568999999999999999986

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=98.49  E-value=1.2e-06  Score=87.49  Aligned_cols=119  Identities=15%  Similarity=0.154  Sum_probs=83.4

Q ss_pred             CCcceEEEEeCCCCcEEEEeCC----------------------CcEEEEeCCCCe-------EEEcccc----------
Q 015463          130 CGRPLGLRFDKKTGDLYIADAY----------------------FGLMKVGPEGGL-------ATSLATE----------  170 (406)
Q Consensus       130 ~~~p~gi~~d~~~g~L~Vad~~----------------------~gl~~~d~~~~~-------~~~l~~~----------  170 (406)
                      ..||-++.+++.+|.+|++-..                      +.|+++.++++.       ...+...          
T Consensus       383 mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~~  462 (592)
T 4a9v_A          383 MDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTP  462 (592)
T ss_dssp             EECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSG
T ss_pred             ccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccccccc
Confidence            4689999999878999998542                      348999765321       2222210          


Q ss_pred             -------cCCcccccccceEEcCCCCEEE-EeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeE
Q 015463          171 -------AEGVPLRFTNDLDIDDEGNVYF-TDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQT  242 (406)
Q Consensus       171 -------~~~~~~~~~~~l~~d~dG~ly~-t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~  242 (406)
                             ..+..++.|++|++|++|+||| +|.+...            ....+         ......++++++.++++
T Consensus       463 ~~g~~~~~~~~~fnsPDnL~fd~~G~LWf~TD~~~~~------------~g~~~---------~~gnn~v~~~dp~tGel  521 (592)
T 4a9v_A          463 KGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSN------------AGDFA---------GMGNNQMLCADPATGEI  521 (592)
T ss_dssp             GGCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCC------------SGGGT---------TCCSCEEEEECTTTCCE
T ss_pred             ccCccCccccCccCCCCceEECCCCCEEEEeCCCcCc------------ccccc---------ccCCceEEEEeCCCCeE
Confidence                   0123588999999999999999 6654211            00011         22345799999999999


Q ss_pred             EEeccc--CCCcceEEEecCCCEEEEEeC
Q 015463          243 TVLLRN--LQFPNGLSLSKDKSFFVFCEG  269 (406)
Q Consensus       243 ~~~~~~--~~~~ngi~l~~d~~~l~v~~t  269 (406)
                      +.++..  ...++|++++||++.|||+-.
T Consensus       522 ~~fl~~P~~aEpnGiafSPD~ktLfV~vQ  550 (592)
T 4a9v_A          522 RRFMVGPIGCEVTGISFSPDQKTLFVGIQ  550 (592)
T ss_dssp             EEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred             EEEEeCCCCccccCCEECCCCCEEEEEEe
Confidence            888754  356899999999999999854

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.47  E-value=5.9e-05  Score=72.33  Aligned_cols=191  Identities=8%  Similarity=-0.002  Sum_probs=113.5

Q ss_pred             CcceEEEcCCCCeeEEEecCCEEEEEeCCc----eeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-
Q 015463           70 GPESMAFDPLGRGPYTGVADGRILFWDGLK----WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-  144 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-  144 (406)
                      ...++++.++|+.+.++..+|.|..|+...    .......                    ....+....+++.+++++ 
T Consensus        69 ~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~--------------------~~h~~~v~~~~~~~~~~~~  128 (416)
T 2pm9_A           69 KFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARF--------------------SNHSSSVKTVKFNAKQDNV  128 (416)
T ss_dssp             CEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEEC--------------------CCSSSCCCEEEECSSSTTB
T ss_pred             ceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhc--------------------cCCccceEEEEEcCCCCCE
Confidence            456889999999888999999999998652    1111111                    111344678999984255 


Q ss_pred             EEEEeCCCcEEEEeCCCCe------EEEcccccCCcccccccceEEcCC-CCEEEEeCCCchhhhccccccccccccccC
Q 015463          145 LYIADAYFGLMKVGPEGGL------ATSLATEAEGVPLRFTNDLDIDDE-GNVYFTDSSTNYQRRQMQKENIPLQLCSSL  217 (406)
Q Consensus       145 L~Vad~~~gl~~~d~~~~~------~~~l~~~~~~~~~~~~~~l~~d~d-G~ly~t~~~~~~~~~~~~~~~~~~~~~~e~  217 (406)
                      |+.+...+.|..+|..+++      ........ ......+.++++.++ +.++++.+.                     
T Consensus       129 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~---------------------  186 (416)
T 2pm9_A          129 LASGGNNGEIFIWDMNKCTESPSNYTPLTPGQS-MSSVDEVISLAWNQSLAHVFASAGS---------------------  186 (416)
T ss_dssp             EEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCS-CCSSCCCCEEEECSSCTTEEEEESS---------------------
T ss_pred             EEEEcCCCeEEEEECCCCccccccccccccccc-cCCCCCeeEEEeCCCCCcEEEEEcC---------------------
Confidence            4555545668889987764      11111000 111235778999998 577776532                     


Q ss_pred             CCCCCCcccCCCCeEEEEeCCCCeEEEeccc-------CCCcceEEEecCCCEEEEEeCCCC---eEEEEEeeCCCCcce
Q 015463          218 NDPSPIKITKDTGRVLKYDPTTKQTTVLLRN-------LQFPNGLSLSKDKSFFVFCEGSVG---RLHKYWLIGEKAGNL  287 (406)
Q Consensus       218 ~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-------~~~~ngi~l~~d~~~l~v~~t~~~---~i~~~~~~g~~~~~~  287 (406)
                                 +|.|..||..+++.......       ......+++++++..++++....+   .|..+++...... .
T Consensus       187 -----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~-~  254 (416)
T 2pm9_A          187 -----------SNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP-L  254 (416)
T ss_dssp             -----------SSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC-S
T ss_pred             -----------CCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC-c
Confidence                       47799999988765544332       234578999999854555545455   7888887632111 1


Q ss_pred             eeee-cCCCCCCceEECC-CCCEEEEEcc
Q 015463          288 EAFA-ILPGYPDNVRTNE-KGEFWVAIHC  314 (406)
Q Consensus       288 ~~~~-~l~g~pd~i~~d~-~G~lwv~~~~  314 (406)
                      ..+. .-.+....+++++ +|++.++...
T Consensus       255 ~~~~~~~~~~v~~~~~s~~~~~~l~s~~~  283 (416)
T 2pm9_A          255 QTLNQGHQKGILSLDWCHQDEHLLLSSGR  283 (416)
T ss_dssp             BCCCSCCSSCEEEEEECSSCSSCEEEEES
T ss_pred             EEeecCccCceeEEEeCCCCCCeEEEEeC
Confidence            1111 1112234566777 7776555543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.47  E-value=1.3e-05  Score=83.63  Aligned_cols=161  Identities=10%  Similarity=-0.022  Sum_probs=92.8

Q ss_pred             cCcceEEEcCCCCeeEEEec-CC-----EEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcC--CcceEEEE
Q 015463           69 QGPESMAFDPLGRGPYTGVA-DG-----RILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHIC--GRPLGLRF  138 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~-~g-----~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~gi~~  138 (406)
                      ..+.++++++||+.++++.. ++     .|+.++.+  +.+.+.......+.-+..........+.....  .....+++
T Consensus        37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  116 (741)
T 2ecf_A           37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW  116 (741)
T ss_dssp             CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred             CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence            35778999999997877776 77     89999876  33333221100000000000000000000000  12456789


Q ss_pred             eCCCCc-EEEEeCCCcEEEEeCCCC---eEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccccccccc
Q 015463          139 DKKTGD-LYIADAYFGLMKVGPEGG---LATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLC  214 (406)
Q Consensus       139 d~~~g~-L~Vad~~~gl~~~d~~~~---~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~  214 (406)
                      ++ +|+ |+++. ...|+.+|.+++   +.+.+...     ...+..+++.+||+..+..+.                  
T Consensus       117 Sp-Dg~~l~~~~-~~~i~~~d~~~~~~~~~~~l~~~-----~~~~~~~~~SPDG~~la~~~~------------------  171 (741)
T 2ecf_A          117 SP-DAQRLLFPL-GGELYLYDLKQEGKAAVRQLTHG-----EGFATDAKLSPKGGFVSFIRG------------------  171 (741)
T ss_dssp             CT-TSSEEEEEE-TTEEEEEESSSCSTTSCCBCCCS-----SSCEEEEEECTTSSEEEEEET------------------
T ss_pred             CC-CCCEEEEEe-CCcEEEEECCCCCcceEEEcccC-----CcccccccCCCCCCEEEEEeC------------------
Confidence            99 665 55554 478999999887   55443321     123677899999974333221                  


Q ss_pred             ccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCC-----------------cceEEEecCCCEEEEEeC
Q 015463          215 SSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQF-----------------PNGLSLSKDKSFFVFCEG  269 (406)
Q Consensus       215 ~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~-----------------~ngi~l~~d~~~l~v~~t  269 (406)
                                     +.|+.+|.++++...+......                 ..+++++||++.++++..
T Consensus       172 ---------------~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~  228 (741)
T 2ecf_A          172 ---------------RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI  228 (741)
T ss_dssp             ---------------TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE
T ss_pred             ---------------CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEE
Confidence                           4699999988877665432221                 467999999998887743

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.47  E-value=1.4e-05  Score=77.03  Aligned_cols=227  Identities=9%  Similarity=-0.040  Sum_probs=120.5

Q ss_pred             cCcceEEEcCCCCeeEEEe----------cCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEE
Q 015463           69 QGPESMAFDPLGRGPYTGV----------ADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRF  138 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~----------~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~  138 (406)
                      .+|. +++++||+.+|+..          .++.|..||....+......-..+             ........|.++++
T Consensus        79 ~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g-------------~r~~~g~~P~~~a~  144 (386)
T 3sjl_D           79 FLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDA-------------PRFLVGTYPWMTSL  144 (386)
T ss_dssp             SSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC-------------CCCCBSCCGGGEEE
T ss_pred             CCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCc-------------cccccCCCCceEEE
Confidence            4586 99999999899875          246689998873322221100000             00011346999999


Q ss_pred             eCCCCcEEEEeC--CCcEEEEeCCCCeEEEcccccCCcccccccc----eEEcCCCCEEEEeCCC--chhh--hccc-cc
Q 015463          139 DKKTGDLYIADA--YFGLMKVGPEGGLATSLATEAEGVPLRFTND----LDIDDEGNVYFTDSST--NYQR--RQMQ-KE  207 (406)
Q Consensus       139 d~~~g~L~Vad~--~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~----l~~d~dG~ly~t~~~~--~~~~--~~~~-~~  207 (406)
                      ++++..|||+..  .+.|..+|..++++..-.. ..+....+|.+    +++.+||.+.+-+...  +...  .... ..
T Consensus       145 spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~-v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~  223 (386)
T 3sjl_D          145 TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD-VPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE  223 (386)
T ss_dssp             CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE-CCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT
T ss_pred             cCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEE-CCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccc
Confidence            995557999985  3679999999887543211 11211122333    3667788655554321  1100  0000 00


Q ss_pred             cccccccccC-CCCCCCcccCCCCeEEEEeCCCCeEEEeccc----------CCCc---ceEEEecCCCEEEEEeC----
Q 015463          208 NIPLQLCSSL-NDPSPIKITKDTGRVLKYDPTTKQTTVLLRN----------LQFP---NGLSLSKDKSFFVFCEG----  269 (406)
Q Consensus       208 ~~~~~~~~e~-~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~----------~~~~---ngi~l~~d~~~l~v~~t----  269 (406)
                      ..++..-.+. ...+.+......|.++.+|..++..+....-          -..|   ..++++++++.+|++..    
T Consensus       224 ~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~  303 (386)
T 3sjl_D          224 DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDE  303 (386)
T ss_dssp             TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCT
T ss_pred             cccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccc
Confidence            0000000000 0011121123356778888766543332110          0112   34888999999999853    


Q ss_pred             -----CCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCCCC--EEEEEc
Q 015463          270 -----SVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE--FWVAIH  313 (406)
Q Consensus       270 -----~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~--lwv~~~  313 (406)
                           ..++|+.++++..   +..-...+...|.++++++||+  ||++..
T Consensus       304 ~~hk~~~~~V~viD~~t~---kv~~~i~vg~~~~~lavs~D~~~~ly~tn~  351 (386)
T 3sjl_D          304 WRHKTASRFVVVLDAKTG---ERLAKFEMGHEIDSINVSQDEKPLLYALST  351 (386)
T ss_dssp             TCTTSCEEEEEEEETTTC---CEEEEEEEEEEECEEEECSSSSCEEEEEET
T ss_pred             cccCCCCCEEEEEECCCC---eEEEEEECCCCcceEEECCCCCeEEEEEcC
Confidence                 1367999997632   2111222334578999999996  455553

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.45  E-value=2.2e-05  Score=74.84  Aligned_cols=151  Identities=11%  Similarity=0.084  Sum_probs=97.6

Q ss_pred             cceEEEEeCCCCcEEEEe-------------CCCcEEEEeCC--CCeEEEccccc--CCcccccccceEEcC--CC--CE
Q 015463          132 RPLGLRFDKKTGDLYIAD-------------AYFGLMKVGPE--GGLATSLATEA--EGVPLRFTNDLDIDD--EG--NV  190 (406)
Q Consensus       132 ~p~gi~~d~~~g~L~Vad-------------~~~gl~~~d~~--~~~~~~l~~~~--~~~~~~~~~~l~~d~--dG--~l  190 (406)
                      .|-.|++++ +|.+|++.             ..+.|+++|++  +.+.+.+....  .......|.+|.+.+  +|  +|
T Consensus        51 G~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           51 GSEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             CCCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CcceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence            477888988 89999996             34569999987  34555553221  111223677877644  56  58


Q ss_pred             EEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec----ccCCCcceEEEecCCCEEEE
Q 015463          191 YFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL----RNLQFPNGLSLSKDKSFFVF  266 (406)
Q Consensus       191 y~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~----~~~~~~ngi~l~~d~~~l~v  266 (406)
                      |+.+...                            ....-.|++++++++....+.    ..+..+|.+++.++|. +|+
T Consensus       130 ~Vvnh~~----------------------------~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyv  180 (355)
T 3sre_A          130 LVVNHPG----------------------------SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYA  180 (355)
T ss_dssp             EEEECST----------------------------TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEE
T ss_pred             EEEECCC----------------------------CCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEe
Confidence            8887531                            111234899999876654432    3466789999999885 666


Q ss_pred             EeC-----------------CCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCCCC-EEEEEccCCc
Q 015463          267 CEG-----------------SVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE-FWVAIHCRRS  317 (406)
Q Consensus       267 ~~t-----------------~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~-lwv~~~~~~~  317 (406)
                      ++.                 ..++|++|+.     ++.++..+.-..|+||++++||+ +|++....+.
T Consensus       181 t~~~~ftd~~~~~~e~~~~~~~g~vyr~d~-----~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~  244 (355)
T 3sre_A          181 TNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-----NDVRVVAEGFDFANGINISPDGKYVYIAELLAHK  244 (355)
T ss_dssp             EESCSCSSHHHHHHHHHTTCCCEEEEEECT-----TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTE
T ss_pred             cCCcEeCCcccccchhhccCCccEEEEEEC-----CeEEEeecCCcccCcceECCCCCEEEEEeCCCCe
Confidence            653                 2367888864     23344443234699999999996 8999865543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.45  E-value=6.1e-05  Score=71.94  Aligned_cols=223  Identities=13%  Similarity=0.030  Sum_probs=121.5

Q ss_pred             CCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCCCcEEEE
Q 015463           79 LGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKV  157 (406)
Q Consensus        79 ~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~~gl~~~  157 (406)
                      ++. +|+++.+|+|+.++.. .............             ........|   .++  ++.+|++....+|+.+
T Consensus       143 ~~~-v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~-------------~~~~~~~~~---~~~--~~~v~~g~~~g~l~~~  203 (376)
T 3q7m_A          143 DGL-VLIHTSNGQLQALNEADGAVKWTVNLDMPS-------------LSLRGESAP---TTA--FGAAVVGGDNGRVSAV  203 (376)
T ss_dssp             TTE-EEEECTTSEEEEEETTTCCEEEEEECCC------------------CCCCCC---EEE--TTEEEECCTTTEEEEE
T ss_pred             CCE-EEEEcCCCeEEEEECCCCcEEEEEeCCCCc-------------eeecCCCCc---EEE--CCEEEEEcCCCEEEEE
Confidence            444 8999999999999975 2222211110000             000000112   333  5789999877789999


Q ss_pred             eCCCCeEEEccccc--CCc-ccc---cccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCe
Q 015463          158 GPEGGLATSLATEA--EGV-PLR---FTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGR  231 (406)
Q Consensus       158 d~~~~~~~~l~~~~--~~~-~~~---~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~  231 (406)
                      |+++|+..-.....  .+. ...   ......+..+|.+|+++..                                 |+
T Consensus       204 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~---------------------------------g~  250 (376)
T 3q7m_A          204 LMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYN---------------------------------GN  250 (376)
T ss_dssp             ETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTT---------------------------------SC
T ss_pred             ECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecC---------------------------------cE
Confidence            99888653211110  000 000   0111112236789998642                                 67


Q ss_pred             EEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeec-CCC-CCCceEECCCCCEE
Q 015463          232 VLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI-LPG-YPDNVRTNEKGEFW  309 (406)
Q Consensus       232 l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~-l~g-~pd~i~~d~~G~lw  309 (406)
                      |+.+|+++|+..... ......++++  +++.+|+... .+.|+.++.+.   ++..-... +.+ ....... .+|.+|
T Consensus       251 l~~~d~~tG~~~w~~-~~~~~~~~~~--~~~~l~~~~~-~g~l~~~d~~t---G~~~w~~~~~~~~~~~~~~~-~~~~l~  322 (376)
T 3q7m_A          251 LTALDLRSGQIMWKR-ELGSVNDFIV--DGNRIYLVDQ-NDRVMALTIDG---GVTLWTQSDLLHRLLTSPVL-YNGNLV  322 (376)
T ss_dssp             EEEEETTTCCEEEEE-CCCCEEEEEE--ETTEEEEEET-TCCEEEEETTT---CCEEEEECTTTTSCCCCCEE-ETTEEE
T ss_pred             EEEEECCCCcEEeec-cCCCCCCceE--ECCEEEEEcC-CCeEEEEECCC---CcEEEeecccCCCcccCCEE-ECCEEE
Confidence            999999988764322 2223334444  4567888764 57899998653   22111111 111 1222333 357799


Q ss_pred             EEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECC-CCCEEEEEECCCCCeeeceeEEEEeCC
Q 015463          310 VAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSP-EGKILQVLEDSKGKVVKAISEVEEKDG  388 (406)
Q Consensus       310 v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~g~~~~~~s~~~~~~g  388 (406)
                      +++..+                                       .+.++|+ +|+++..+....+.   ..+.....++
T Consensus       323 v~~~~g---------------------------------------~l~~~d~~tG~~~~~~~~~~~~---~~~~~~~~~~  360 (376)
T 3q7m_A          323 VGDSEG---------------------------------------YLHWINVEDGRFVAQQKVDSSG---FQTEPVAADG  360 (376)
T ss_dssp             EECTTS---------------------------------------EEEEEETTTCCEEEEEECCTTC---BCSCCEEETT
T ss_pred             EEeCCC---------------------------------------eEEEEECCCCcEEEEEecCCCc---ceeCCEEECC
Confidence            887544                                       3777884 58888777643332   1233345689


Q ss_pred             EEEEecCCCCeEEEEe
Q 015463          389 KLWMGSVLMPFVAVYD  404 (406)
Q Consensus       389 ~Ly~Gs~~~~~i~~~~  404 (406)
                      +||+++. +..|..++
T Consensus       361 ~l~v~~~-~G~l~~~~  375 (376)
T 3q7m_A          361 KLLIQAK-DGTVYSIT  375 (376)
T ss_dssp             EEEEEBT-TSCEEEEE
T ss_pred             EEEEEeC-CCEEEEEe
Confidence            9999997 45577765

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.45  E-value=9.9e-05  Score=70.61  Aligned_cols=184  Identities=13%  Similarity=0.089  Sum_probs=110.6

Q ss_pred             CcceEEEcCCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463           70 GPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va  148 (406)
                      ...++++.++|+.++++..+|.|..|+.. ......  .                    ........+++.+++..|+++
T Consensus       110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~--~--------------------~~~~~v~~~~~~~~~~~l~~~  167 (425)
T 1r5m_A          110 QVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVL--N--------------------FHRAPIVSVKWNKDGTHIISM  167 (425)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEE--C--------------------CCCSCEEEEEECTTSSEEEEE
T ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeec--c--------------------CCCccEEEEEECCCCCEEEEE
Confidence            45788999999989999999999999854 211111  0                    112446789999833346667


Q ss_pred             eCCCcEEEEeCCCCeEEEcccccCCc-----------ccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccC
Q 015463          149 DAYFGLMKVGPEGGLATSLATEAEGV-----------PLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSL  217 (406)
Q Consensus       149 d~~~gl~~~d~~~~~~~~l~~~~~~~-----------~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~  217 (406)
                      ...+.|..+|..+++...........           ....+..+++.+++.++++..                      
T Consensus       168 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------  225 (425)
T 1r5m_A          168 DVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGP----------------------  225 (425)
T ss_dssp             ETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECG----------------------
T ss_pred             ecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcC----------------------
Confidence            66677999999877643322111100           001166777777776665542                      


Q ss_pred             CCCCCCcccCCCCeEEEEeCCCCeEEEecc-cCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCC
Q 015463          218 NDPSPIKITKDTGRVLKYDPTTKQTTVLLR-NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGY  296 (406)
Q Consensus       218 ~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~-~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~  296 (406)
                                 .|.|..||..+++...... .......++++++++.++.+. ..+.|..+++...+  ....+....+.
T Consensus       226 -----------~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~--~~~~~~~~~~~  291 (425)
T 1r5m_A          226 -----------KGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSAS-DDGTLRIWHGGNGN--SQNCFYGHSQS  291 (425)
T ss_dssp             -----------GGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEE-TTSCEEEECSSSBS--CSEEECCCSSC
T ss_pred             -----------CCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEc-CCCEEEEEECCCCc--cceEecCCCcc
Confidence                       3679999988765433322 223346789999998776655 45778888765321  11122112222


Q ss_pred             CCceEECCCCCEEEEE
Q 015463          297 PDNVRTNEKGEFWVAI  312 (406)
Q Consensus       297 pd~i~~d~~G~lwv~~  312 (406)
                      ...+++.++| ++++.
T Consensus       292 i~~~~~~~~~-~l~~~  306 (425)
T 1r5m_A          292 IVSASWVGDD-KVISC  306 (425)
T ss_dssp             EEEEEEETTT-EEEEE
T ss_pred             EEEEEECCCC-EEEEE
Confidence            3456777788 44433

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=98.44  E-value=0.00035  Score=64.55  Aligned_cols=159  Identities=11%  Similarity=0.078  Sum_probs=101.8

Q ss_pred             ccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC
Q 015463           64 FLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (406)
Q Consensus        64 ~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g  143 (406)
                      +.+.-....++++.++|..+.++..+|.|..|+...........                    ........+++.+ ++
T Consensus         9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~--------------------~~~~~v~~~~~~~-~~   67 (304)
T 2ynn_A            9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQ--------------------VTETPVRAGKFIA-RK   67 (304)
T ss_dssp             EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE--------------------CCSSCEEEEEEEG-GG
T ss_pred             ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEee--------------------ccCCcEEEEEEeC-CC
Confidence            34444566889999999989999999999999976222211111                    0012245678888 55


Q ss_pred             c-EEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCC
Q 015463          144 D-LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSP  222 (406)
Q Consensus       144 ~-L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  222 (406)
                      + |..+...+.|..+|.++++........    ...++++++.+++.+.++.+.                          
T Consensus        68 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~sgs~--------------------------  117 (304)
T 2ynn_A           68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAH----PDYIRSIAVHPTKPYVLSGSD--------------------------  117 (304)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEECC----SSCEEEEEECSSSSEEEEEET--------------------------
T ss_pred             CEEEEECCCCEEEEEECCCCcEEEEEeCC----CCcEEEEEEcCCCCEEEEECC--------------------------
Confidence            5 555665567889998877643221111    134778999999987776532                          


Q ss_pred             CcccCCCCeEEEEeCCCC-eEEEeccc-CCCcceEEEecC-CCEEEEEeCCCCeEEEEEee
Q 015463          223 IKITKDTGRVLKYDPTTK-QTTVLLRN-LQFPNGLSLSKD-KSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       223 ~~~~~~~g~l~~~d~~t~-~~~~~~~~-~~~~ngi~l~~d-~~~l~v~~t~~~~i~~~~~~  280 (406)
                            +|.+..+|.+++ .......+ ......++++|+ +..+ ++....+.|..+++.
T Consensus       118 ------D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l-~sgs~D~~v~iwd~~  171 (304)
T 2ynn_A          118 ------DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF-ASGCLDRTVKVWSLG  171 (304)
T ss_dssp             ------TSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEE-EEEETTSEEEEEETT
T ss_pred             ------CCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEE-EEEeCCCeEEEEECC
Confidence                  467888887765 33333322 234568899984 5544 555556788888864

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.42  E-value=0.00022  Score=67.52  Aligned_cols=184  Identities=10%  Similarity=0.057  Sum_probs=109.3

Q ss_pred             cceEEEcCCCCeeEEEecCCEEEEEeCC--c-eeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcE-E
Q 015463           71 PESMAFDPLGRGPYTGVADGRILFWDGL--K-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL-Y  146 (406)
Q Consensus        71 pe~i~~d~~g~~ly~g~~~g~I~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L-~  146 (406)
                      ..++++.+++. +.+++.+|.|..|+..  + ........                  ..| .+....++|.+ +|++ .
T Consensus        85 v~~~~~s~d~~-l~~~s~dg~v~lWd~~~~~~~~~~~~~~------------------~~H-~~~V~~v~~sp-dg~~l~  143 (344)
T 4gqb_B           85 VADLTWVGERG-ILVASDSGAVELWELDENETLIVSKFCK------------------YEH-DDIVSTVSVLS-SGTQAV  143 (344)
T ss_dssp             EEEEEEETTTE-EEEEETTSEEEEEEECTTSSCEEEEEEE------------------ECC-SSCEEEEEECT-TSSEEE
T ss_pred             EEEEEEeCCCe-EEEEECCCEEEEEeccCCCceeEeeccc------------------cCC-CCCEEEEEECC-CCCEEE
Confidence            45788888876 8899999999999865  1 11111100                  011 24467899999 6654 4


Q ss_pred             EEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCC-CEEEEeCCCchhhhccccccccccccccCCCCCCCcc
Q 015463          147 IADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKI  225 (406)
Q Consensus       147 Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  225 (406)
                      .+...+.|..+|.++++........    ...++.+++.+++ +++++.+.                             
T Consensus       144 sgs~d~~i~iwd~~~~~~~~~~~~h----~~~V~~~~~~~~~~~~l~s~s~-----------------------------  190 (344)
T 4gqb_B          144 SGSKDICIKVWDLAQQVVLSSYRAH----AAQVTCVAASPHKDSVFLSCSE-----------------------------  190 (344)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCC----SSCEEEEEECSSCTTEEEEEET-----------------------------
T ss_pred             EEeCCCeEEEEECCCCcEEEEEcCc----CCceEEEEecCCCCCceeeecc-----------------------------
Confidence            5555566899999887653322111    2346788888887 56665432                             


Q ss_pred             cCCCCeEEEEeCCCCeEEEecc-c--CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEE
Q 015463          226 TKDTGRVLKYDPTTKQTTVLLR-N--LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRT  302 (406)
Q Consensus       226 ~~~~g~l~~~d~~t~~~~~~~~-~--~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~  302 (406)
                         +|.|..+|..+++...... .  ......+++++++..++++....+.|..+++...+.  ...+..-.+....+++
T Consensus       191 ---D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~--~~~~~~h~~~v~~v~f  265 (344)
T 4gqb_B          191 ---DNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC--VLSSAVHSQCVTGLVF  265 (344)
T ss_dssp             ---TSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C--CEEEECCSSCEEEEEE
T ss_pred             ---ccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcE--EEEEcCCCCCEEEEEE
Confidence               4679999988876543321 1  123467888887666666666667888888753211  1112111111234677


Q ss_pred             CCCCC-EEEEEc
Q 015463          303 NEKGE-FWVAIH  313 (406)
Q Consensus       303 d~~G~-lwv~~~  313 (406)
                      .++|. +.++..
T Consensus       266 sp~g~~~lasgs  277 (344)
T 4gqb_B          266 SPHSVPFLASLS  277 (344)
T ss_dssp             CSSSSCCEEEEE
T ss_pred             ccCCCeEEEEEe
Confidence            88875 444433

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=98.41  E-value=0.00034  Score=64.49  Aligned_cols=156  Identities=10%  Similarity=0.057  Sum_probs=101.7

Q ss_pred             cccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-E
Q 015463           67 QIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-L  145 (406)
Q Consensus        67 ~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-L  145 (406)
                      .-....++++.++|+.+.++..+|.|..|+....+......                    ........+.+.+ +++ |
T Consensus        64 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--------------------~~~~~v~~~~~~~-~~~~l  122 (312)
T 4ery_A           64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK--------------------GHSNYVFCCNFNP-QSNLI  122 (312)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--------------------CCSSCEEEEEECS-SSSEE
T ss_pred             CCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEc--------------------CCCCCEEEEEEcC-CCCEE
Confidence            33456789999999989999999999999876211111110                    0123356788988 555 4


Q ss_pred             EEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcc
Q 015463          146 YIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKI  225 (406)
Q Consensus       146 ~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  225 (406)
                      +.+...+.|..+|.++++........    ...+..+++.++|++.++.+.                             
T Consensus       123 ~s~~~d~~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~-----------------------------  169 (312)
T 4ery_A          123 VSGSFDESVRIWDVKTGKCLKTLPAH----SDPVSAVHFNRDGSLIVSSSY-----------------------------  169 (312)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCC----SSCEEEEEECTTSSEEEEEET-----------------------------
T ss_pred             EEEeCCCcEEEEECCCCEEEEEecCC----CCcEEEEEEcCCCCEEEEEeC-----------------------------
Confidence            55555567999998876543221111    124677889999987776532                             


Q ss_pred             cCCCCeEEEEeCCCCeEEE-eccc-CCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          226 TKDTGRVLKYDPTTKQTTV-LLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       226 ~~~~g~l~~~d~~t~~~~~-~~~~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                         +|.+..||..+++... +... ......++++++++.++.+. ..+.|..|++.
T Consensus       170 ---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~  222 (312)
T 4ery_A          170 ---DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDYS  222 (312)
T ss_dssp             ---TSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE-TTTEEEEEETT
T ss_pred             ---CCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc-CCCeEEEEECC
Confidence               4779999988776433 2222 22345688999999776654 46788888875

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=98.41  E-value=0.0001  Score=70.95  Aligned_cols=180  Identities=13%  Similarity=0.071  Sum_probs=107.5

Q ss_pred             EEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-EEEEeCCCc
Q 015463           75 AFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYIADAYFG  153 (406)
Q Consensus        75 ~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-L~Vad~~~g  153 (406)
                      ++.++|+.+.+++.+|.|..|+..........                    ....+....+++.+ +++ |+.+...+.
T Consensus       104 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------------------~~h~~~v~~~~~~~-~~~~l~s~s~d~~  162 (420)
T 3vl1_A          104 TAKLQMRRFILGTTEGDIKVLDSNFNLQREID--------------------QAHVSEITKLKFFP-SGEALISSSQDMQ  162 (420)
T ss_dssp             EECSSSCEEEEEETTSCEEEECTTSCEEEEET--------------------TSSSSCEEEEEECT-TSSEEEEEETTSE
T ss_pred             EEecCCCEEEEEECCCCEEEEeCCCcceeeec--------------------ccccCccEEEEECC-CCCEEEEEeCCCe
Confidence            56788988889999999999987622222111                    01134567899998 555 555655567


Q ss_pred             EEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEE
Q 015463          154 LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVL  233 (406)
Q Consensus       154 l~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~  233 (406)
                      |..+|.++++.......    ....+.++++.++|+..++.+.                                +|.+.
T Consensus       163 i~iwd~~~~~~~~~~~~----h~~~v~~~~~~~~~~~l~s~~~--------------------------------d~~v~  206 (420)
T 3vl1_A          163 LKIWSVKDGSNPRTLIG----HRATVTDIAIIDRGRNVLSASL--------------------------------DGTIR  206 (420)
T ss_dssp             EEEEETTTCCCCEEEEC----CSSCEEEEEEETTTTEEEEEET--------------------------------TSCEE
T ss_pred             EEEEeCCCCcCceEEcC----CCCcEEEEEEcCCCCEEEEEcC--------------------------------CCcEE
Confidence            89999876643221111    1234678899999987776432                                36688


Q ss_pred             EEeCCCCeEEEecccC-------------------------CCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCccee
Q 015463          234 KYDPTTKQTTVLLRNL-------------------------QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLE  288 (406)
Q Consensus       234 ~~d~~t~~~~~~~~~~-------------------------~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~  288 (406)
                      .||..+++........                         .....++++++++.++.. +..+.|..+++...+  ...
T Consensus       207 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~--~~~  283 (420)
T 3vl1_A          207 LWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAG-HVSGVITVHNVFSKE--QTI  283 (420)
T ss_dssp             EEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEE-ETTSCEEEEETTTCC--EEE
T ss_pred             EeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEE-cCCCeEEEEECCCCc--eeE
Confidence            8888877654433211                         122345667888776555 446788888875321  111


Q ss_pred             eee-cCCCCCCceEECCCCC-EEEEEcc
Q 015463          289 AFA-ILPGYPDNVRTNEKGE-FWVAIHC  314 (406)
Q Consensus       289 ~~~-~l~g~pd~i~~d~~G~-lwv~~~~  314 (406)
                      .+. ...+....++++++|. +.++...
T Consensus       284 ~~~~~~~~~v~~~~~~~~~~~~l~~g~~  311 (420)
T 3vl1_A          284 QLPSKFTCSCNSLTVDGNNANYIYAGYE  311 (420)
T ss_dssp             EECCTTSSCEEEEEECSSCTTEEEEEET
T ss_pred             EcccccCCCceeEEEeCCCCCEEEEEeC
Confidence            111 1122234577888887 5554433

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.40  E-value=0.00026  Score=67.97  Aligned_cols=189  Identities=11%  Similarity=-0.026  Sum_probs=116.6

Q ss_pred             cccCcceEEEcC-CCCeeEEEecCCEEEEEeCC-c-e-----eEEEeecCCCccccCCCCCcccccccCCcCCcceEEEE
Q 015463           67 QIQGPESMAFDP-LGRGPYTGVADGRILFWDGL-K-W-----TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRF  138 (406)
Q Consensus        67 ~~~gpe~i~~d~-~g~~ly~g~~~g~I~~~~~~-~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~  138 (406)
                      .-....++++.+ +++.+.+++.+|.|..|+.. . .     ....                    ........+..+++
T Consensus        80 h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~--------------------~~~~h~~~v~~~~~  139 (402)
T 2aq5_A           80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVI--------------------TLEGHTKRVGIVAW  139 (402)
T ss_dssp             CSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSE--------------------EEECCSSCEEEEEE
T ss_pred             CCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceE--------------------EecCCCCeEEEEEE
Confidence            334557899998 88889999999999999865 1 1     0000                    01111345678999


Q ss_pred             eCCCC-c-EEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccccccccccc
Q 015463          139 DKKTG-D-LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSS  216 (406)
Q Consensus       139 d~~~g-~-L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e  216 (406)
                      .+ ++ + |+.+...+.|..+|.++++....... .+ ....+.++++.++|+++++.+.                    
T Consensus       140 ~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~--------------------  196 (402)
T 2aq5_A          140 HP-TAQNVLLSAGCDNVILVWDVGTGAAVLTLGP-DV-HPDTIYSVDWSRDGALICTSCR--------------------  196 (402)
T ss_dssp             CS-SBTTEEEEEETTSCEEEEETTTTEEEEEECT-TT-CCSCEEEEEECTTSSCEEEEET--------------------
T ss_pred             Cc-CCCCEEEEEcCCCEEEEEECCCCCccEEEec-CC-CCCceEEEEECCCCCEEEEEec--------------------
Confidence            98 54 4 55555556799999888764432210 01 1234678999999976666432                    


Q ss_pred             CCCCCCCcccCCCCeEEEEeCCCCeEEEec-ccCC--CcceEEEecCCCEEEEEe--CCCCeEEEEEeeCCCCcceeeee
Q 015463          217 LNDPSPIKITKDTGRVLKYDPTTKQTTVLL-RNLQ--FPNGLSLSKDKSFFVFCE--GSVGRLHKYWLIGEKAGNLEAFA  291 (406)
Q Consensus       217 ~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~--~~ngi~l~~d~~~l~v~~--t~~~~i~~~~~~g~~~~~~~~~~  291 (406)
                                  +|.|..||..+++..... ....  ....+++++|++.++...  ...+.|..+++...+... ....
T Consensus       197 ------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~-~~~~  263 (402)
T 2aq5_A          197 ------------DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPL-SLQE  263 (402)
T ss_dssp             ------------TSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCS-EEEE
T ss_pred             ------------CCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCc-eEEe
Confidence                        478999999888765433 2322  256789999987655442  446788888876432111 1111


Q ss_pred             -cCCCCCCceEECCCCCEEEE
Q 015463          292 -ILPGYPDNVRTNEKGEFWVA  311 (406)
Q Consensus       292 -~l~g~pd~i~~d~~G~lwv~  311 (406)
                       +.......++++++|++.+.
T Consensus       264 ~~~~~~v~~~~~s~~~~~l~~  284 (402)
T 2aq5_A          264 LDTSSGVLLPFFDPDTNIVYL  284 (402)
T ss_dssp             CCCCSSCEEEEEETTTTEEEE
T ss_pred             ccCCCceeEEEEcCCCCEEEE
Confidence             12223456778888886543

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=98.40  E-value=0.0003  Score=65.58  Aligned_cols=193  Identities=10%  Similarity=0.016  Sum_probs=114.0

Q ss_pred             cCcccCcceEEEcCCC-CeeEEEecCCEEEEEeCC--c--e-eEEEeecCCCccccCCCCCcccccccCCcCCcceEEEE
Q 015463           65 LNQIQGPESMAFDPLG-RGPYTGVADGRILFWDGL--K--W-TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRF  138 (406)
Q Consensus        65 ~~~~~gpe~i~~d~~g-~~ly~g~~~g~I~~~~~~--~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~  138 (406)
                      .+.-....++++.+++ +.+.+++.|+.|..|+..  .  . ..+....                    ........+++
T Consensus        14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~--------------------~h~~~v~~~~~   73 (319)
T 3frx_A           14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK--------------------GHSHIVQDCTL   73 (319)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEE--------------------CCSSCEEEEEE
T ss_pred             ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEe--------------------CCcccEEEEEE
Confidence            4444456788888754 778999999999988753  1  1 1111110                    11233567889


Q ss_pred             eCCCCc-EEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccC
Q 015463          139 DKKTGD-LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSL  217 (406)
Q Consensus       139 d~~~g~-L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~  217 (406)
                      .+ +++ |..+...+.|..+|.++++........    ...+.++++.++|.+.++.+.                     
T Consensus        74 s~-dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~s~---------------------  127 (319)
T 3frx_A           74 TA-DGAYALSASWDKTLRLWDVATGETYQRFVGH----KSDVMSVDIDKKASMIISGSR---------------------  127 (319)
T ss_dssp             CT-TSSEEEEEETTSEEEEEETTTTEEEEEEECC----SSCEEEEEECTTSCEEEEEET---------------------
T ss_pred             CC-CCCEEEEEeCCCEEEEEECCCCCeeEEEccC----CCcEEEEEEcCCCCEEEEEeC---------------------
Confidence            98 565 455555567889999887643221111    124678899999988777542                     


Q ss_pred             CCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCC-----EEEEEeCCCCeEEEEEeeCCCCcceeeeec
Q 015463          218 NDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKS-----FFVFCEGSVGRLHKYWLIGEKAGNLEAFAI  292 (406)
Q Consensus       218 ~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~-----~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~  292 (406)
                                 ++.+..+|.++.....+.........+++.+.+.     ..+++....+.|..+++...     +....
T Consensus       128 -----------D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-----~~~~~  191 (319)
T 3frx_A          128 -----------DKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-----QIEAD  191 (319)
T ss_dssp             -----------TSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTT-----EEEEE
T ss_pred             -----------CCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc-----hhhee
Confidence                       4668888887655555443333445677776432     23445455677888876531     11111


Q ss_pred             CCCC---CCceEECCCCCEEEEEccCCcch
Q 015463          293 LPGY---PDNVRTNEKGEFWVAIHCRRSLY  319 (406)
Q Consensus       293 l~g~---pd~i~~d~~G~lwv~~~~~~~~~  319 (406)
                      +.+.   ...++++++|++.++......+.
T Consensus       192 ~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~  221 (319)
T 3frx_A          192 FIGHNSNINTLTASPDGTLIASAGKDGEIM  221 (319)
T ss_dssp             ECCCCSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred             ecCCCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence            2222   23467788998777665544443

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.40  E-value=0.00026  Score=68.16  Aligned_cols=181  Identities=10%  Similarity=-0.003  Sum_probs=116.0

Q ss_pred             cceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeC
Q 015463           71 PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA  150 (406)
Q Consensus        71 pe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~  150 (406)
                      ..++++.++|+.+++++.+|.|..|+...........                    ........+.++  +..++.+..
T Consensus       137 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------------------~~~~~v~~~~~~--~~~l~~~~~  194 (401)
T 4aez_A          137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA--------------------GHQARVGCLSWN--RHVLSSGSR  194 (401)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC--------------------CCSSCEEEEEEE--TTEEEEEET
T ss_pred             EEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEec--------------------CCCCceEEEEEC--CCEEEEEcC
Confidence            4688999999988999999999999876211111111                    112345677786  356777777


Q ss_pred             CCcEEEEeCCCCe--EEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCC
Q 015463          151 YFGLMKVGPEGGL--ATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKD  228 (406)
Q Consensus       151 ~~gl~~~d~~~~~--~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  228 (406)
                      .+.|..+|.....  ...+...     ...+.++++.++|++.++.+.                                
T Consensus       195 dg~i~i~d~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~s~~~--------------------------------  237 (401)
T 4aez_A          195 SGAIHHHDVRIANHQIGTLQGH-----SSEVCGLAWRSDGLQLASGGN--------------------------------  237 (401)
T ss_dssp             TSEEEEEETTSSSCEEEEEECC-----SSCEEEEEECTTSSEEEEEET--------------------------------
T ss_pred             CCCEEEEecccCcceeeEEcCC-----CCCeeEEEEcCCCCEEEEEeC--------------------------------
Confidence            7778899987332  2222111     234678899999987776532                                


Q ss_pred             CCeEEEEeCCCCeEEEec-ccCCCcceEEEecCCCEEEEEeC--CCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCC
Q 015463          229 TGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEG--SVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEK  305 (406)
Q Consensus       229 ~g~l~~~d~~t~~~~~~~-~~~~~~ngi~l~~d~~~l~v~~t--~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~  305 (406)
                      +|.|..||..+++..... ........+++++++..++++..  ..+.|..+++...+  ....+ ...+....++++++
T Consensus       238 d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~--~~~~~-~~~~~v~~~~~s~~  314 (401)
T 4aez_A          238 DNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA--RVNTV-DAGSQVTSLIWSPH  314 (401)
T ss_dssp             TSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC--EEEEE-ECSSCEEEEEECSS
T ss_pred             CCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC--EEEEE-eCCCcEEEEEECCC
Confidence            377999999877654433 33344578999998887877754  46788888875321  11111 22233456778888


Q ss_pred             CCEEEEEc
Q 015463          306 GEFWVAIH  313 (406)
Q Consensus       306 G~lwv~~~  313 (406)
                      |.+.++..
T Consensus       315 ~~~l~~~~  322 (401)
T 4aez_A          315 SKEIMSTH  322 (401)
T ss_dssp             SSEEEEEE
T ss_pred             CCeEEEEe
Confidence            88766643

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.39  E-value=3.6e-05  Score=69.60  Aligned_cols=182  Identities=11%  Similarity=0.024  Sum_probs=110.2

Q ss_pred             CcceEEEcCCCCeeEEEec----CCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC
Q 015463           70 GPESMAFDPLGRGPYTGVA----DGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~----~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g  143 (406)
                      .+.++++.++|+.++++..    ...|+.++..  ..+.+.                       . ......+++.+ ++
T Consensus        86 ~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~-----------------------~-~~~~~~~~~sp-dg  140 (297)
T 2ojh_A           86 CNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMT-----------------------K-NLPSYWHGWSP-DG  140 (297)
T ss_dssp             BCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECC-----------------------S-SSSEEEEEECT-TS
T ss_pred             cccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEee-----------------------c-CCCccceEECC-CC
Confidence            4467899999997777662    4678888764  211110                       0 12256678988 55


Q ss_pred             c-EEEEe-CCC--cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCC
Q 015463          144 D-LYIAD-AYF--GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLN  218 (406)
Q Consensus       144 ~-L~Vad-~~~--gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~  218 (406)
                      + |+++. ...  .|+.++.++++...+...     ...+.+++++++|+ ++++...                      
T Consensus       141 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~~~----------------------  193 (297)
T 2ojh_A          141 KSFTYCGIRDQVFDIYSMDIDSGVETRLTHG-----EGRNDGPDYSPDGRWIYFNSSR----------------------  193 (297)
T ss_dssp             SEEEEEEEETTEEEEEEEETTTCCEEECCCS-----SSCEEEEEECTTSSEEEEEECT----------------------
T ss_pred             CEEEEEECCCCceEEEEEECCCCcceEcccC-----CCccccceECCCCCEEEEEecC----------------------
Confidence            5 55333 333  478888877766554322     12457789999997 5555421                      


Q ss_pred             CCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCC----------CCeEEEEEeeCCCCccee
Q 015463          219 DPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS----------VGRLHKYWLIGEKAGNLE  288 (406)
Q Consensus       219 ~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~----------~~~i~~~~~~g~~~~~~~  288 (406)
                              ....+|+.++..++....+.........+++++|++.++++...          ...|+.+++++.+.....
T Consensus       194 --------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~  265 (297)
T 2ojh_A          194 --------TGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLF  265 (297)
T ss_dssp             --------TSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEE
T ss_pred             --------CCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeee
Confidence                    12356899987777776665443445578899999988776542          246888887643221111


Q ss_pred             eeecCCCCCCceEECCCCCEEEE
Q 015463          289 AFAILPGYPDNVRTNEKGEFWVA  311 (406)
Q Consensus       289 ~~~~l~g~pd~i~~d~~G~lwv~  311 (406)
                      .+....+....+.++++|+..+.
T Consensus       266 ~~~~~~~~~~~~~~spdg~~l~~  288 (297)
T 2ojh_A          266 DLFGGQGTMNSPNWSPDGDEFAY  288 (297)
T ss_dssp             EEEESTTTSCSCCBCTTSSEEEE
T ss_pred             ccCCCCcccccceECCCCCEEEE
Confidence            11122334566788899984433

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.39  E-value=0.00012  Score=70.40  Aligned_cols=188  Identities=9%  Similarity=-0.060  Sum_probs=116.1

Q ss_pred             cceEEEcCCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-EEEE
Q 015463           71 PESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYIA  148 (406)
Q Consensus        71 pe~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-L~Va  148 (406)
                      ..++.+  +++.+++++.+|.|..|+.. .-.......                    ...+...++++.+ +++ |.++
T Consensus       179 v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------------------~~~~~v~~~~~~~-~~~~l~s~  235 (401)
T 4aez_A          179 VGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQ--------------------GHSSEVCGLAWRS-DGLQLASG  235 (401)
T ss_dssp             EEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEE--------------------CCSSCEEEEEECT-TSSEEEEE
T ss_pred             eEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEc--------------------CCCCCeeEEEEcC-CCCEEEEE
Confidence            345566  45668899999999999865 211111110                    1124467899998 554 5566


Q ss_pred             eCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCC-CEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463          149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK  227 (406)
Q Consensus       149 d~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  227 (406)
                      ...+.|..+|..+++.......    ....+.++++.++| .++++.+                              +.
T Consensus       236 ~~d~~v~iwd~~~~~~~~~~~~----~~~~v~~~~~~p~~~~ll~~~~------------------------------gs  281 (401)
T 4aez_A          236 GNDNVVQIWDARSSIPKFTKTN----HNAAVKAVAWCPWQSNLLATGG------------------------------GT  281 (401)
T ss_dssp             ETTSCEEEEETTCSSEEEEECC----CSSCCCEEEECTTSTTEEEEEC------------------------------CT
T ss_pred             eCCCeEEEccCCCCCccEEecC----CcceEEEEEECCCCCCEEEEec------------------------------CC
Confidence            6567799999887654322111    12347789999977 5666542                              11


Q ss_pred             CCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEe-CCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCCC
Q 015463          228 DTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCE-GSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKG  306 (406)
Q Consensus       228 ~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~-t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G  306 (406)
                      .+|.|..||..+++.............++++++++.++.+. ...+.|..|++..........+..-.+....++++++|
T Consensus       282 ~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg  361 (401)
T 4aez_A          282 MDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDG  361 (401)
T ss_dssp             TTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTS
T ss_pred             CCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCC
Confidence            24789999998887655444445567899999999887763 34678888887642111111111122335567889999


Q ss_pred             CEEEEEccC
Q 015463          307 EFWVAIHCR  315 (406)
Q Consensus       307 ~lwv~~~~~  315 (406)
                      .+.++....
T Consensus       362 ~~l~s~~~d  370 (401)
T 4aez_A          362 RILSTAASD  370 (401)
T ss_dssp             SEEEEECTT
T ss_pred             CEEEEEeCC
Confidence            866665443

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=98.38  E-value=0.00076  Score=64.76  Aligned_cols=153  Identities=14%  Similarity=0.047  Sum_probs=97.9

Q ss_pred             cceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeC
Q 015463           71 PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA  150 (406)
Q Consensus        71 pe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~  150 (406)
                      ..++++.++|+.+.++..+|.|..|+....+......                    ........+++.+++..|+.+..
T Consensus       126 v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~--------------------~h~~~v~~~~~~p~~~~l~s~s~  185 (393)
T 1erj_A          126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ--------------------GHEQDIYSLDYFPSGDKLVSGSG  185 (393)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC--------------------CCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc--------------------cCCCCEEEEEEcCCCCEEEEecC
Confidence            3578999999988999999999999976222211111                    01234678899983334555555


Q ss_pred             CCcEEEEeCCCCeEEEcccccCCcccccccceEEcC-CCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCC
Q 015463          151 YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDT  229 (406)
Q Consensus       151 ~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~  229 (406)
                      .+.|..+|..+++.......     ...+..+++.+ +|++.++.+.                                +
T Consensus       186 d~~v~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~s~--------------------------------d  228 (393)
T 1erj_A          186 DRTVRIWDLRTGQCSLTLSI-----EDGVTTVAVSPGDGKYIAAGSL--------------------------------D  228 (393)
T ss_dssp             TSEEEEEETTTTEEEEEEEC-----SSCEEEEEECSTTCCEEEEEET--------------------------------T
T ss_pred             CCcEEEEECCCCeeEEEEEc-----CCCcEEEEEECCCCCEEEEEcC--------------------------------C
Confidence            56788999988765432221     12356778887 7877766432                                4


Q ss_pred             CeEEEEeCCCCeEEEecc-------c-CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463          230 GRVLKYDPTTKQTTVLLR-------N-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  281 (406)
Q Consensus       230 g~l~~~d~~t~~~~~~~~-------~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g  281 (406)
                      |.+..||..+++......       + ......+++++|++.++.. ...+.|..+++..
T Consensus       229 ~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~-s~d~~v~~wd~~~  287 (393)
T 1erj_A          229 RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG-SLDRSVKLWNLQN  287 (393)
T ss_dssp             SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEE-ETTSEEEEEEC--
T ss_pred             CcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEE-eCCCEEEEEECCC
Confidence            678888988776433221       1 1234578999999877554 4467888888753

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.38  E-value=9.2e-05  Score=71.24  Aligned_cols=191  Identities=11%  Similarity=0.053  Sum_probs=117.5

Q ss_pred             ccCcceEEEcCCC-CeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEE
Q 015463           68 IQGPESMAFDPLG-RGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (406)
Q Consensus        68 ~~gpe~i~~d~~g-~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~  146 (406)
                      -....++++.++| +.++++..+|.|..|+...-.......                  .....+....+++++++..|+
T Consensus       131 ~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------------------~~~~~~~v~~~~~~~~~~~l~  192 (402)
T 2aq5_A          131 TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG------------------PDVHPDTIYSVDWSRDGALIC  192 (402)
T ss_dssp             SSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC------------------TTTCCSCEEEEEECTTSSCEE
T ss_pred             CCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe------------------cCCCCCceEEEEECCCCCEEE
Confidence            3455788999997 678899999999999976222221110                  001124467899998333466


Q ss_pred             EEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCccc
Q 015463          147 IADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKIT  226 (406)
Q Consensus       147 Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~  226 (406)
                      ++...+.|..+|.++++......  .+.....+..+++.++|.++++..+                             .
T Consensus       193 ~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~g~~-----------------------------~  241 (402)
T 2aq5_A          193 TSCRDKRVRVIEPRKGTVVAEKD--RPHEGTRPVHAVFVSEGKILTTGFS-----------------------------R  241 (402)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEE--CSSCSSSCCEEEECSTTEEEEEEEC-----------------------------T
T ss_pred             EEecCCcEEEEeCCCCceeeeec--cCCCCCcceEEEEcCCCcEEEEecc-----------------------------C
Confidence            66666779999998876433221  1111123677889999987776521                             1


Q ss_pred             CCCCeEEEEeCCCCeE--EEe-cccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeec--CCCCCCceE
Q 015463          227 KDTGRVLKYDPTTKQT--TVL-LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI--LPGYPDNVR  301 (406)
Q Consensus       227 ~~~g~l~~~d~~t~~~--~~~-~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~--l~g~pd~i~  301 (406)
                      ..++.|..||..+++.  ... .........+++++|++.++++....+.|..|++...+. ....+..  ..+...+++
T Consensus       242 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~-~~~~l~~~~~~~~v~~~~  320 (402)
T 2aq5_A          242 MSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP-FLHYLSMFSSKESQRGMG  320 (402)
T ss_dssp             TCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT-CEEEEEEECCSSCCSEEE
T ss_pred             CCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc-ceEeecccccCCcccceE
Confidence            2247799999876542  111 223344567899999999988876678899998874321 0112221  123455667


Q ss_pred             ECCCCCE
Q 015463          302 TNEKGEF  308 (406)
Q Consensus       302 ~d~~G~l  308 (406)
                      +.++|.+
T Consensus       321 ~sp~~~~  327 (402)
T 2aq5_A          321 YMPKRGL  327 (402)
T ss_dssp             ECCGGGS
T ss_pred             Eeccccc
Confidence            7666654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=98.37  E-value=2.1e-05  Score=76.94  Aligned_cols=191  Identities=14%  Similarity=0.130  Sum_probs=115.1

Q ss_pred             cceEEEcC-CCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEE
Q 015463           71 PESMAFDP-LGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (406)
Q Consensus        71 pe~i~~d~-~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~V  147 (406)
                      ..++++.| ++++|.+|+.+|.|..|+..  ....+...                   ..+ .+...+|+|.+.++++++
T Consensus       122 V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~-------------------~gH-~~~V~~l~f~p~~~~~l~  181 (435)
T 4e54_B          122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKG-------------------IGA-GGSITGLKFNPLNTNQFY  181 (435)
T ss_dssp             EEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECC-------------------CSS-SCCCCEEEECSSCTTEEE
T ss_pred             EEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEc-------------------cCC-CCCEEEEEEeCCCCCEEE
Confidence            45789987 56678899999999999865  21111110                   011 244678999874565554


Q ss_pred             E-eCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCccc
Q 015463          148 A-DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKIT  226 (406)
Q Consensus       148 a-d~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~  226 (406)
                      + ...+.|..+|.+++....+....  .....+..++++++|.+.++.+.                              
T Consensus       182 s~s~D~~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~g~~------------------------------  229 (435)
T 4e54_B          182 ASSMEGTTRLQDFKGNILRVFASSD--TINIWFCSLDVSASSRMVVTGDN------------------------------  229 (435)
T ss_dssp             EECSSSCEEEEETTSCEEEEEECCS--SCSCCCCCEEEETTTTEEEEECS------------------------------
T ss_pred             EEeCCCEEEEeeccCCceeEEeccC--CCCccEEEEEECCCCCEEEEEeC------------------------------
Confidence            4 44456888999887665543321  11234567889999987776532                              


Q ss_pred             CCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCC---CceEEC
Q 015463          227 KDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYP---DNVRTN  303 (406)
Q Consensus       227 ~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~p---d~i~~d  303 (406)
                        +|.|..+|.+++....+.......+.++++|+++.++++....+.|..+++...+..  ..+....+..   ..++++
T Consensus       230 --dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~--~~~~~~~~h~~~v~~~~~s  305 (435)
T 4e54_B          230 --VGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK--ASFLYSLPHRHPVNAACFS  305 (435)
T ss_dssp             --SSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSS--SCCSBCCBCSSCEEECCBC
T ss_pred             --CCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEeccccccc--ceEEEeeeccccccceeEC
Confidence              477889998765544333222345688999998877766655677777876532111  1111111222   234567


Q ss_pred             CCCCEEEEEccCCc
Q 015463          304 EKGEFWVAIHCRRS  317 (406)
Q Consensus       304 ~~G~lwv~~~~~~~  317 (406)
                      ++|++.++......
T Consensus       306 pdg~~l~s~~~D~~  319 (435)
T 4e54_B          306 PDGARLLTTDQKSE  319 (435)
T ss_dssp             TTSSEEEEEESSSC
T ss_pred             CCCCeeEEEcCCCE
Confidence            78876665544333

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.34  E-value=0.00013  Score=75.61  Aligned_cols=212  Identities=13%  Similarity=-0.009  Sum_probs=109.7

Q ss_pred             cCcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEE
Q 015463           69 QGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~  146 (406)
                      ..+.++++++++. +.++ .++.|+.++..  ....+...                       .+.+..+++++ +|+..
T Consensus        82 ~~v~~~~~spd~~-~~~~-~~~~i~~~d~~~~~~~~l~~~-----------------------~~~~~~~~~Sp-dG~~l  135 (706)
T 2z3z_A           82 FPSFRTLDAGRGL-VVLF-TQGGLVGFDMLARKVTYLFDT-----------------------NEETASLDFSP-VGDRV  135 (706)
T ss_dssp             CCCEEEEETTTTE-EEEE-ETTEEEEEETTTTEEEEEECC-----------------------TTCCTTCEECT-TSSEE
T ss_pred             cCceeEEECCCCe-EEEE-ECCEEEEEECCCCceEEccCC-----------------------cccccCCcCCC-CCCEE
Confidence            4578899999944 3333 46899999976  22222111                       12244568888 66543


Q ss_pred             EEeCCCcEEEEeCCC-----CeEEEcccccCCc----------ccccccceEEcCCCCEEEEeCCCchhhhccc-----c
Q 015463          147 IADAYFGLMKVGPEG-----GLATSLATEAEGV----------PLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQ-----K  206 (406)
Q Consensus       147 Vad~~~gl~~~d~~~-----~~~~~l~~~~~~~----------~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~-----~  206 (406)
                      +....+.|+.++.++     ++...+.......          .+..+.++++.+||+..+..+........+.     .
T Consensus       136 a~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~  215 (706)
T 2z3z_A          136 AYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHP  215 (706)
T ss_dssp             EEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCS
T ss_pred             EEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCC
Confidence            333456799999887     7655443221110          1122578899999964433210000000000     0


Q ss_pred             ccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccC---CCcceEEEecCCCEEEEEeCCC----CeEEEEEe
Q 015463          207 ENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNL---QFPNGLSLSKDKSFFVFCEGSV----GRLHKYWL  279 (406)
Q Consensus       207 ~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~---~~~ngi~l~~d~~~l~v~~t~~----~~i~~~~~  279 (406)
                      ........ .-...+   .......|+.+|.++++...+....   .....++++||++.++++....    ..|+.+++
T Consensus       216 ~~~~~~~~-~y~~~g---~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~  291 (706)
T 2z3z_A          216 LEAESKPL-YYPMAG---TPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDA  291 (706)
T ss_dssp             SSCEEEEE-CCCBTT---SCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEET
T ss_pred             CCCceEEe-eCCCCC---CCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEEC
Confidence            00000000 000000   0112356999999988876654321   2345789999999888765432    37788876


Q ss_pred             eCCCCcceeeee-c-CCC---CCCceEECC--CCCEEEEE
Q 015463          280 IGEKAGNLEAFA-I-LPG---YPDNVRTNE--KGEFWVAI  312 (406)
Q Consensus       280 ~g~~~~~~~~~~-~-l~g---~pd~i~~d~--~G~lwv~~  312 (406)
                      .+.+  ....+. . ...   ....+++++  +|++.++.
T Consensus       292 ~~g~--~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~  329 (706)
T 2z3z_A          292 ETGR--FVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQS  329 (706)
T ss_dssp             TTCC--EEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEE
T ss_pred             CCCc--eeeEEEEccCCCeECccCCceeecCCCCEEEEEE
Confidence            5321  222221 1 111   124678888  88844433

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.33  E-value=6.8e-06  Score=83.57  Aligned_cols=142  Identities=11%  Similarity=-0.056  Sum_probs=89.9

Q ss_pred             EEeCC-CCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccc
Q 015463          137 RFDKK-TGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCS  215 (406)
Q Consensus       137 ~~d~~-~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~  215 (406)
                      ++.++ ++.++++....++..+|.++++.+.+....      . .++++++||+.+++.+..                  
T Consensus       116 ~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~------~-~~~~~spDG~~la~~~~~------------------  170 (582)
T 3o4h_A          116 SGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP------G-FGFVSDIRGDLIAGLGFF------------------  170 (582)
T ss_dssp             EEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES------S-CEEEEEEETTEEEEEEEE------------------
T ss_pred             eeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC------C-ceEEECCCCCEEEEEEEc------------------
Confidence            44442 344666666667778898888776654321      1 678899999876644320                  


Q ss_pred             cCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCC-CeEEEEEeeCCCCcceeeeecCC
Q 015463          216 SLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV-GRLHKYWLIGEKAGNLEAFAILP  294 (406)
Q Consensus       216 e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~-~~i~~~~~~g~~~~~~~~~~~l~  294 (406)
                                ....+.|+.+|.++++.+.+.......+.+++||||+.++.++..+ ..|+++++++.   ....+....
T Consensus       171 ----------~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~---~~~~~~~~~  237 (582)
T 3o4h_A          171 ----------GGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG---SVEDLELPS  237 (582)
T ss_dssp             ----------ETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC---CEEECCCSC
T ss_pred             ----------CCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC---cEEEccCCC
Confidence                      1112459999999898887765544457899999999998665432 27888887643   222222212


Q ss_pred             CCCCceE--------ECCCCCEEEEEccCC
Q 015463          295 GYPDNVR--------TNEKGEFWVAIHCRR  316 (406)
Q Consensus       295 g~pd~i~--------~d~~G~lwv~~~~~~  316 (406)
                      +.+.+++        .++||.++++.....
T Consensus       238 ~~~~~~~~~~~~~~~~spdg~~~~~~~~~g  267 (582)
T 3o4h_A          238 KDFSSYRPTAITWLGYLPDGRLAVVARREG  267 (582)
T ss_dssp             SHHHHHCCSEEEEEEECTTSCEEEEEEETT
T ss_pred             cChhhhhhccccceeEcCCCcEEEEEEcCC
Confidence            2223445        889998877765443

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.33  E-value=6.3e-05  Score=78.09  Aligned_cols=146  Identities=12%  Similarity=0.103  Sum_probs=88.9

Q ss_pred             cceEEEEeCCCCc-EEEEeCCC-----cEEEEeCCCC-eEEEcccccCCcccccccceEEcC--CCCEEEEeCCCchhhh
Q 015463          132 RPLGLRFDKKTGD-LYIADAYF-----GLMKVGPEGG-LATSLATEAEGVPLRFTNDLDIDD--EGNVYFTDSSTNYQRR  202 (406)
Q Consensus       132 ~p~gi~~d~~~g~-L~Vad~~~-----gl~~~d~~~~-~~~~l~~~~~~~~~~~~~~l~~d~--dG~ly~t~~~~~~~~~  202 (406)
                      .+..+++.+ +|+ |+++....     .|+.+|.+++ ..+.+...........++++++.+  ||+++++...      
T Consensus       259 ~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~------  331 (706)
T 2z3z_A          259 FLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRR------  331 (706)
T ss_dssp             EEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECT------
T ss_pred             eEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEcc------
Confidence            356789998 665 66654433     6899999988 555543221111112246788988  9976555421      


Q ss_pred             ccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcce-EEEecCCCEEEEEeCCCC----eEEEE
Q 015463          203 QMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNG-LSLSKDKSFFVFCEGSVG----RLHKY  277 (406)
Q Consensus       203 ~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ng-i~l~~d~~~l~v~~t~~~----~i~~~  277 (406)
                                              .+..+|+.++.+++..+.+..+...... +++++|++.++++....+    .|+++
T Consensus       332 ------------------------~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~  387 (706)
T 2z3z_A          332 ------------------------DGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCI  387 (706)
T ss_dssp             ------------------------TSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEE
T ss_pred             ------------------------CCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEE
Confidence                                    1235699999776666666543333334 789999999988876544    78888


Q ss_pred             EeeCCCCcceeeeecCCCCCCceEECCCCCEEEEE
Q 015463          278 WLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAI  312 (406)
Q Consensus       278 ~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~lwv~~  312 (406)
                      ++++..   .+.+... +....++++++|+.++..
T Consensus       388 d~~~~~---~~~l~~~-~~~~~~~~spdg~~l~~~  418 (706)
T 2z3z_A          388 DIKGGK---TKDLTPE-SGMHRTQLSPDGSAIIDI  418 (706)
T ss_dssp             ETTCCC---CEESCCS-SSEEEEEECTTSSEEEEE
T ss_pred             EcCCCC---ceeccCC-CceEEEEECCCCCEEEEE
Confidence            865422   2222211 113356778888865544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.33  E-value=0.00041  Score=72.86  Aligned_cols=192  Identities=9%  Similarity=0.032  Sum_probs=116.6

Q ss_pred             cCcccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc
Q 015463           65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (406)
Q Consensus        65 ~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~  144 (406)
                      .+.-....+++++++|..+.++..+|.|..|+...........                    ...+....+++++++..
T Consensus        10 ~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~--------------------~~~~~v~~~~~s~~~~~   69 (814)
T 3mkq_A           10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQ--------------------VTETPVRAGKFIARKNW   69 (814)
T ss_dssp             EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE--------------------CCSSCEEEEEEEGGGTE
T ss_pred             ecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEe--------------------cCCCcEEEEEEeCCCCE
Confidence            4444567899999999988999999999999965211111111                    01244678999993334


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCc
Q 015463          145 LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIK  224 (406)
Q Consensus       145 L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  224 (406)
                      |.++...+.|..+|.++++........    ...+..+++.++|...++.+.                            
T Consensus        70 l~~~~~dg~i~vw~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~----------------------------  117 (814)
T 3mkq_A           70 IIVGSDDFRIRVFNYNTGEKVVDFEAH----PDYIRSIAVHPTKPYVLSGSD----------------------------  117 (814)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECC----SSCEEEEEECSSSSEEEEEET----------------------------
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEecC----CCCEEEEEEeCCCCEEEEEcC----------------------------
Confidence            666666667899998877543222211    134778899999976555322                            


Q ss_pred             ccCCCCeEEEEeCCCC-eEEEecc-cCCCcceEEEec-CCCEEEEEeCCCCeEEEEEeeCCCCcceeeee-cCCCCCCce
Q 015463          225 ITKDTGRVLKYDPTTK-QTTVLLR-NLQFPNGLSLSK-DKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPGYPDNV  300 (406)
Q Consensus       225 ~~~~~g~l~~~d~~t~-~~~~~~~-~~~~~ngi~l~~-d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~-~l~g~pd~i  300 (406)
                          +|.+..||.+++ ....... .-.....++++| |++.++.+ +..+.|..+++......  ..+. ...+....+
T Consensus       118 ----dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~-~~dg~v~vwd~~~~~~~--~~~~~~~~~~v~~~  190 (814)
T 3mkq_A          118 ----DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG-CLDRTVKVWSLGQSTPN--FTLTTGQERGVNYV  190 (814)
T ss_dssp             ----TSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEE-ETTSEEEEEETTCSSCS--EEEECCCTTCCCEE
T ss_pred             ----CCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCcce--eEEecCCCCCEEEE
Confidence                377888888766 3333332 223456789999 66655444 45678888887532211  1111 111234456


Q ss_pred             EECC--CCCEEEEEccC
Q 015463          301 RTNE--KGEFWVAIHCR  315 (406)
Q Consensus       301 ~~d~--~G~lwv~~~~~  315 (406)
                      +..+  +|.+.++....
T Consensus       191 ~~~~~~~~~~l~~~~~d  207 (814)
T 3mkq_A          191 DYYPLPDKPYMITASDD  207 (814)
T ss_dssp             EECCSTTCCEEEEECTT
T ss_pred             EEEECCCCCEEEEEeCC
Confidence            6666  77766555443

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.33  E-value=0.0001  Score=70.11  Aligned_cols=200  Identities=16%  Similarity=0.067  Sum_probs=109.6

Q ss_pred             EEEcCCCCeeEEEec-CC--EEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463           74 MAFDPLGRGPYTGVA-DG--RILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (406)
Q Consensus        74 i~~d~~g~~ly~g~~-~g--~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va  148 (406)
                      .++.+||+.+++... +|  .|+.++.+  ..+.+...                      ......+.++++++..|+.+
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~----------------------~~~~~~~~~~spdg~~l~~~   98 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEG----------------------RGDNTFGGFLSPDDDALFYV   98 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCS----------------------SCBCSSSCEECTTSSEEEEE
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeC----------------------CCCCccceEEcCCCCEEEEE
Confidence            567889986655554 55  58888876  22222110                      01112245788844457777


Q ss_pred             eCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccc--ccccccccCCCCCCCccc
Q 015463          149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKEN--IPLQLCSSLNDPSPIKIT  226 (406)
Q Consensus       149 d~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~--~~~~~~~e~~~~~~~~~~  226 (406)
                      .....|+++|.++++.+.+.....+.  ........+++|...++......   ++....  ..+....+         .
T Consensus        99 ~~~~~l~~~d~~~g~~~~~~~~~~~~--~~~~~~~~~~dg~~l~~~~~~~~---~~~~~~~~~~~~~~~~---------~  164 (388)
T 3pe7_A           99 KDGRNLMRVDLATLEENVVYQVPAEW--VGYGTWVANSDCTKLVGIEIRRE---DWVPLTDWKKFHEFYF---------T  164 (388)
T ss_dssp             ETTTEEEEEETTTCCEEEEEECCTTE--EEEEEEEECTTSSEEEEEEEEGG---GCCCCCSHHHHHHHGG---------G
T ss_pred             eCCCeEEEEECCCCcceeeeechhhc--ccccceeECCCCCeeccccccCc---ccccccccchhhhhhc---------c
Confidence            66668999999988766544321111  11112345788877765321000   000000  00000111         2


Q ss_pred             CCCCeEEEEeCCCCeEEEecccCCCcceEEEec-CCCEEEEEeCC-----CCeEEEEEeeCCCCcceeeeecCC-C-CCC
Q 015463          227 KDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSK-DKSFFVFCEGS-----VGRLHKYWLIGEKAGNLEAFAILP-G-YPD  298 (406)
Q Consensus       227 ~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~-d~~~l~v~~t~-----~~~i~~~~~~g~~~~~~~~~~~l~-g-~pd  298 (406)
                      .....|+.+|.++++.+.+.........++++| |++.+.++...     ..+|+.++.++...   ..+.... + ...
T Consensus       165 ~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~---~~l~~~~~~~~~~  241 (388)
T 3pe7_A          165 KPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM---RKVKTHAEGESCT  241 (388)
T ss_dssp             CCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC---EESCCCCTTEEEE
T ss_pred             CCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce---EEeeeCCCCcccc
Confidence            234679999999998887765555567899999 99887666543     34899988765321   2221111 0 112


Q ss_pred             ceEECCCCC-E-EEEE
Q 015463          299 NVRTNEKGE-F-WVAI  312 (406)
Q Consensus       299 ~i~~d~~G~-l-wv~~  312 (406)
                      ..+.++||+ | |++.
T Consensus       242 ~~~~spdg~~l~~~~~  257 (388)
T 3pe7_A          242 HEFWVPDGSALVYVSY  257 (388)
T ss_dssp             EEEECTTSSCEEEEEE
T ss_pred             cceECCCCCEEEEEec
Confidence            346788887 4 4444

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.32  E-value=0.00032  Score=71.26  Aligned_cols=175  Identities=10%  Similarity=-0.008  Sum_probs=110.1

Q ss_pred             CeeEEE-ecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCCCcEEEEeC
Q 015463           81 RGPYTG-VADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGP  159 (406)
Q Consensus        81 ~~ly~g-~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~~gl~~~d~  159 (406)
                      +.+|+. ..++.|..+|....+.+....                     ....|++++++++...+||++..+.|..+|.
T Consensus       167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~---------------------~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~  225 (567)
T 1qks_A          167 NLFSVTLRDAGQIALIDGSTYEIKTVLD---------------------TGYAVHISRLSASGRYLFVIGRDGKVNMIDL  225 (567)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEE---------------------CSSCEEEEEECTTSCEEEEEETTSEEEEEET
T ss_pred             ceEEEEeCCCCeEEEEECCCCeEEEEEe---------------------CCCCccceEECCCCCEEEEEcCCCeEEEEEC
Confidence            345554 456899999987222221111                     1345889999995456899987778999998


Q ss_pred             C--CCeEEEcccccCCcccccccceEEc----CCC-CEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeE
Q 015463          160 E--GGLATSLATEAEGVPLRFTNDLDID----DEG-NVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRV  232 (406)
Q Consensus       160 ~--~~~~~~l~~~~~~~~~~~~~~l~~d----~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l  232 (406)
                      .  +.+...  ....+   ..|.+++++    +|| .+|+++..                                .+.+
T Consensus       226 ~~~t~~~v~--~i~~G---~~P~~ia~s~~~~pDGk~l~v~n~~--------------------------------~~~v  268 (567)
T 1qks_A          226 WMKEPTTVA--EIKIG---SEARSIETSKMEGWEDKYAIAGAYW--------------------------------PPQY  268 (567)
T ss_dssp             TSSSCCEEE--EEECC---SEEEEEEECCSTTCTTTEEEEEEEE--------------------------------TTEE
T ss_pred             CCCCCcEeE--EEecC---CCCceeEEccccCCCCCEEEEEEcc--------------------------------CCeE
Confidence            5  543321  11112   247899999    588 57777632                                3678


Q ss_pred             EEEeCCCCeEEEecc--cC----------CCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeee-ecCCCCCCc
Q 015463          233 LKYDPTTKQTTVLLR--NL----------QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAF-AILPGYPDN  299 (406)
Q Consensus       233 ~~~d~~t~~~~~~~~--~~----------~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~-~~l~g~pd~  299 (406)
                      ..+|..+.+......  +.          ....++..++++..++++-...+.|+.++....+  ...+- .....+|.+
T Consensus       269 ~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~--~~~v~~i~~~~~~~d  346 (567)
T 1qks_A          269 VIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN--NLKTTEISAERFLHD  346 (567)
T ss_dssp             EEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS--EEEEEEEECCSSEEE
T ss_pred             EEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCc--cceeeeeeccccccC
Confidence            889988876543321  10          1234677888888888887777899999865322  11111 122335778


Q ss_pred             eEECCCCC-EEEEEccC
Q 015463          300 VRTNEKGE-FWVAIHCR  315 (406)
Q Consensus       300 i~~d~~G~-lwv~~~~~  315 (406)
                      +.+|++|+ +|++....
T Consensus       347 ~~~~pdgr~~~va~~~s  363 (567)
T 1qks_A          347 GGLDGSHRYFITAANAR  363 (567)
T ss_dssp             EEECTTSCEEEEEEGGG
T ss_pred             ceECCCCCEEEEEeCCC
Confidence            88999999 56666544

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.31  E-value=0.00081  Score=64.12  Aligned_cols=195  Identities=10%  Similarity=0.033  Sum_probs=111.7

Q ss_pred             cCcceEEEcCCCC-eeEEEecCCEEEEEeC----Ccee------EEEeecCCCccccCCCCCcccccccCCcCCcceEEE
Q 015463           69 QGPESMAFDPLGR-GPYTGVADGRILFWDG----LKWT------DFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLR  137 (406)
Q Consensus        69 ~gpe~i~~d~~g~-~ly~g~~~g~I~~~~~----~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~  137 (406)
                      ....++++.++|+ .+.+++.+|.|..|+.    ..-.      ........    ...      ........+....++
T Consensus        46 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~----~~~------~~~~~~~~~~v~~~~  115 (425)
T 1r5m_A           46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHP----FAL------SASSGKTTNQVTCLA  115 (425)
T ss_dssp             SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECC----CCC------C------CBCEEEEE
T ss_pred             CceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccc----ccc------cccccCCCCceEEEE
Confidence            4568999999999 8999999999999887    5111      11110000    000      000001133567899


Q ss_pred             EeCCCCc-EEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccccccccccc
Q 015463          138 FDKKTGD-LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSS  216 (406)
Q Consensus       138 ~d~~~g~-L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e  216 (406)
                      +.+ +++ |+++...+.|..++.++.....+...     ...+.++++.++|+..++.+.                    
T Consensus       116 ~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~--------------------  169 (425)
T 1r5m_A          116 WSH-DGNSIVTGVENGELRLWNKTGALLNVLNFH-----RAPIVSVKWNKDGTHIISMDV--------------------  169 (425)
T ss_dssp             ECT-TSSEEEEEETTSCEEEEETTSCEEEEECCC-----CSCEEEEEECTTSSEEEEEET--------------------
T ss_pred             EcC-CCCEEEEEeCCCeEEEEeCCCCeeeeccCC-----CccEEEEEECCCCCEEEEEec--------------------
Confidence            998 555 56666556688899665544443211     234778899999976665432                    


Q ss_pred             CCCCCCCcccCCCCeEEEEeCCCCeEEEecccCC-C---------------cceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          217 LNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQ-F---------------PNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       217 ~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~-~---------------~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                                  +|.+..||..+++......... .               ...+++++++. + ++....+.|..+++.
T Consensus       170 ------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~g~i~~~d~~  235 (425)
T 1r5m_A          170 ------------ENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK-F-VIPGPKGAIFVYQIT  235 (425)
T ss_dssp             ------------TCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTE-E-EEECGGGCEEEEETT
T ss_pred             ------------CCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCE-E-EEEcCCCeEEEEEcC
Confidence                        3678888888776544332211 1               56678888764 3 444556789999876


Q ss_pred             CCCCcceeeeecCCCCCCceEECCCCCEEEEEccC
Q 015463          281 GEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCR  315 (406)
Q Consensus       281 g~~~~~~~~~~~l~g~pd~i~~d~~G~lwv~~~~~  315 (406)
                      ..+.  ...+..-.+....++++++|++.++....
T Consensus       236 ~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  268 (425)
T 1r5m_A          236 EKTP--TGKLIGHHGPISVLEFNDTNKLLLSASDD  268 (425)
T ss_dssp             CSSC--SEEECCCSSCEEEEEEETTTTEEEEEETT
T ss_pred             CCce--eeeeccCCCceEEEEECCCCCEEEEEcCC
Confidence            4211  11121112223456778888865554433

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=98.31  E-value=0.00012  Score=69.18  Aligned_cols=191  Identities=16%  Similarity=0.094  Sum_probs=112.7

Q ss_pred             cceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-EEE
Q 015463           71 PESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYI  147 (406)
Q Consensus        71 pe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-L~V  147 (406)
                      ..++++.++|+.|.++..|+.|..|+..  .+.......                   .........+++++ +|+ |..
T Consensus        19 v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~-------------------~~h~~~v~~~~~sp-~g~~l~s   78 (345)
T 3fm0_A           19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLS-------------------EGHQRTVRKVAWSP-CGNYLAS   78 (345)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEEC-------------------SSCSSCEEEEEECT-TSSEEEE
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeec-------------------cccCCcEEEEEECC-CCCEEEE
Confidence            3578999999988899999999988754  211111000                   01123467899999 565 455


Q ss_pred             EeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463          148 ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK  227 (406)
Q Consensus       148 ad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  227 (406)
                      +...+.+..++..++..+.+... .+ ....+.++++.++|++.++.+.                               
T Consensus        79 ~s~D~~v~iw~~~~~~~~~~~~~-~~-h~~~v~~v~~sp~~~~l~s~s~-------------------------------  125 (345)
T 3fm0_A           79 ASFDATTCIWKKNQDDFECVTTL-EG-HENEVKSVAWAPSGNLLATCSR-------------------------------  125 (345)
T ss_dssp             EETTSCEEEEEECCC-EEEEEEE-CC-CSSCEEEEEECTTSSEEEEEET-------------------------------
T ss_pred             EECCCcEEEEEccCCCeEEEEEc-cC-CCCCceEEEEeCCCCEEEEEEC-------------------------------
Confidence            55556677787766543322211 11 1234788999999988777532                               


Q ss_pred             CCCeEEEEeCCCCeE----EEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCC---CCce
Q 015463          228 DTGRVLKYDPTTKQT----TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGY---PDNV  300 (406)
Q Consensus       228 ~~g~l~~~d~~t~~~----~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~---pd~i  300 (406)
                       ++.+..+|..++..    ..+.........++++|+++.+..+. ..+.|..++....   .......+.+.   ...+
T Consensus       126 -D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s-~d~~i~~w~~~~~---~~~~~~~~~~h~~~v~~l  200 (345)
T 3fm0_A          126 -DKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASAS-YDDTVKLYREEED---DWVCCATLEGHESTVWSL  200 (345)
T ss_dssp             -TSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEE-TTSCEEEEEEETT---EEEEEEEECCCSSCEEEE
T ss_pred             -CCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEe-CCCcEEEEEecCC---CEEEEEEecCCCCceEEE
Confidence             36677777665432    12222223456789999998765554 4567777776532   11111122222   3356


Q ss_pred             EECCCCCEEEEEccCCcch
Q 015463          301 RTNEKGEFWVAIHCRRSLY  319 (406)
Q Consensus       301 ~~d~~G~lwv~~~~~~~~~  319 (406)
                      +++++|++.++....+.+.
T Consensus       201 ~~sp~g~~l~s~s~D~~v~  219 (345)
T 3fm0_A          201 AFDPSGQRLASCSDDRTVR  219 (345)
T ss_dssp             EECTTSSEEEEEETTSCEE
T ss_pred             EECCCCCEEEEEeCCCeEE
Confidence            7888888776655544443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.31  E-value=1.3e-05  Score=80.82  Aligned_cols=257  Identities=14%  Similarity=0.053  Sum_probs=141.6

Q ss_pred             CCCeeEEEe-cCCEEEEEeCCcee--EEEeecCCCccccCCCCCcccccccCCcCCcceEEEEe--CCCCcEEEEeC---
Q 015463           79 LGRGPYTGV-ADGRILFWDGLKWT--DFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFD--KKTGDLYIADA---  150 (406)
Q Consensus        79 ~g~~ly~g~-~~g~I~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d--~~~g~L~Vad~---  150 (406)
                      ||+.+|+.. .+++|.+++.+..+  .+...                     +....|.|+++.  ++.+.+|+++.   
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~i---------------------p~g~~phg~~~~~~p~~~~v~~~~~~~~  158 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEI---------------------PNAKGIHGLRPQKWPRSNYVFCNGEDET  158 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEEC---------------------SSCCSEEEEEECCSSBCSEEEEEECSCE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeC---------------------CCCCCCcceeeeecCCCcEEEEeccccc
Confidence            788788854 46789999988333  22111                     113458999984  65677888842   


Q ss_pred             --------------C-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchh---------hhccc
Q 015463          151 --------------Y-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQ---------RRQMQ  205 (406)
Q Consensus       151 --------------~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~---------~~~~~  205 (406)
                                    + +-+..+|.++.++.--. ...+    .|..+++++||. +|++...+...         ..++.
T Consensus       159 p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI-~Vgg----~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v  233 (595)
T 1fwx_A          159 PLVNDGTNMEDVANYVNVFTAVDADKWEVAWQV-LVSG----NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHI  233 (595)
T ss_dssp             ESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEE-EESS----CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEE
T ss_pred             ccCCCCcccccccccCceEEEEECCCCeEEEEE-EeCC----CccceEECCCCCEEEEEecCcccCcchhhccccccceE
Confidence                          1 24778888876543211 1112    477899999985 66665432110         00000


Q ss_pred             ccc--ccccccccCCCCCCCcccCCCCeEEEEeCCC--CeE-EEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          206 KEN--IPLQLCSSLNDPSPIKITKDTGRVLKYDPTT--KQT-TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       206 ~~~--~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t--~~~-~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                      .-.  ........  +....++    +++-.+|..+  ++. .....--..|.|+.++|||+++|++......|..|+.+
T Consensus       234 ~V~~~~~~~~~v~--~Gk~~~i----~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~  307 (595)
T 1fwx_A          234 VVFNIAEIEKAIA--AGDYQEL----NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVT  307 (595)
T ss_dssp             EEEEHHHHHHHHH--HTCSEEE----TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred             EEeeccceeEecc--CCCeeEE----CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECc
Confidence            000  00000000  0001111    4599999987  433 22333335799999999999999999999999999987


Q ss_pred             CCC------C-cceeeeec--CCCCCCceEECCCCCEEEEEccCCcchhhhhhcC-h-----hhhhhhhccCccceeeee
Q 015463          281 GEK------A-GNLEAFAI--LPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALY-P-----KIRHFLLKLPISAKTHYL  345 (406)
Q Consensus       281 g~~------~-~~~~~~~~--l~g~pd~i~~d~~G~lwv~~~~~~~~~~~~~~~~-~-----~~~~~~~~l~~~~~~~~~  345 (406)
                      ..+      . ....+...  ..-.|..+++|++|++|++..-...+..+.+..- .     ...+.+.+++....+-..
T Consensus       308 ~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~  387 (595)
T 1fwx_A          308 RFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHL  387 (595)
T ss_dssp             GHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEE
T ss_pred             ccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccc
Confidence            311      0 11122322  2234889999999999999875544433222110 0     012344455443332111


Q ss_pred             EeecCcceEEEEEECCCCCEEEEEECCC
Q 015463          346 IHVGGRLHAMAVKYSPEGKILQVLEDSK  373 (406)
Q Consensus       346 ~~~~~~~~~~v~~~d~~g~~~~~~~~~~  373 (406)
                      .+.      .-..++++|+.+.+....+
T Consensus       388 ~~~------~g~t~~~DGk~l~~~Nk~s  409 (595)
T 1fwx_A          388 KTV------MGETLDATNDWLVCLSKFS  409 (595)
T ss_dssp             EET------TTTSTTCCSSEEEEEESCC
T ss_pred             eec------cceEeCCCCCEEEEcCCCC
Confidence            111      1123478888888876433

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.30  E-value=0.00015  Score=69.87  Aligned_cols=211  Identities=12%  Similarity=-0.014  Sum_probs=115.4

Q ss_pred             cCcceEEEcCCCCeeEEEec--CCEEEEEeCCc---eeEEEeec-------CCC--ccccCCCC------Cccccc----
Q 015463           69 QGPESMAFDPLGRGPYTGVA--DGRILFWDGLK---WTDFAFTS-------NNR--SELCNPKP------IATSYL----  124 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~--~g~I~~~~~~~---~~~~~~~~-------~~~--~~~~~~~~------~~~~~~----  124 (406)
                      ..|+.+++++||+.+|+...  ++.|..+|...   ...+....       ...  -..|....      .+....    
T Consensus       137 ~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~  216 (386)
T 3sjl_D          137 TYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH  216 (386)
T ss_dssp             CCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE
T ss_pred             CCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEee
Confidence            36999999999999999864  57899999772   12221100       000  00111100      000000    


Q ss_pred             -ccCCcCCcceE--EEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEccccc--------CCcccccccceEEcCCC-CEEE
Q 015463          125 -KNEHICGRPLG--LRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEA--------EGVPLRFTNDLDIDDEG-NVYF  192 (406)
Q Consensus       125 -~~~~~~~~p~g--i~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~--------~~~~~~~~~~l~~d~dG-~ly~  192 (406)
                       .......+|..  ..++..+|+++..+..+.++.+|..++..+......        .+........+++++++ ++|+
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV  296 (386)
T 3sjl_D          217 TEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL  296 (386)
T ss_dssp             CCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred             cceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEE
Confidence             00001112221  245433676544444556888888766543322110        11111122346777765 7888


Q ss_pred             EeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCC-EEEEEeCCC
Q 015463          193 TDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKS-FFVFCEGSV  271 (406)
Q Consensus       193 t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~-~l~v~~t~~  271 (406)
                      +.....    .+.+                   ..+.+.|+.+|.+|+++.....--..++++++++|++ .||++....
T Consensus       297 ~~~~~~----~~~h-------------------k~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~  353 (386)
T 3sjl_D          297 LVDQRD----EWRH-------------------KTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGD  353 (386)
T ss_dssp             EEEECC----TTCT-------------------TSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTT
T ss_pred             Eecccc----cccc-------------------CCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCC
Confidence            752100    0000                   1123579999999998765543334678999999997 788877777


Q ss_pred             CeEEEEEeeCCCCcceeeeecCCCCCCceEECCC
Q 015463          272 GRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEK  305 (406)
Q Consensus       272 ~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~  305 (406)
                      +.|..++...   ++...-...++.|+.+.+..|
T Consensus       354 ~~VsViD~~t---~k~~~~i~~~~~p~~l~~s~d  384 (386)
T 3sjl_D          354 KTLYIHDAES---GEELRSVNQLGHGPQVITTAD  384 (386)
T ss_dssp             TEEEEEETTT---CCEEEEECCCCSSCCEEEECC
T ss_pred             CeEEEEECCC---CcEEEEecCCCCCceeEECCc
Confidence            8999999652   322222346778888877654

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.30  E-value=6e-05  Score=71.53  Aligned_cols=186  Identities=12%  Similarity=0.089  Sum_probs=110.4

Q ss_pred             cceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEE-Ee
Q 015463           71 PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI-AD  149 (406)
Q Consensus        71 pe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~V-ad  149 (406)
                      ..++++.++|+.+.+++.+|.|..|+...-+.+.....                   + .+....+++.+++..+++ +.
T Consensus       130 V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~-------------------h-~~~V~~~~~~~~~~~~l~s~s  189 (344)
T 4gqb_B          130 VSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRA-------------------H-AAQVTCVAASPHKDSVFLSCS  189 (344)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-------------------C-SSCEEEEEECSSCTTEEEEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC-------------------c-CCceEEEEecCCCCCceeeec
Confidence            46889999999899999999999999762222211110                   1 244677889884445554 44


Q ss_pred             CCCcEEEEeCCCCeEE-EcccccCCcccccccceEEcCC-CCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463          150 AYFGLMKVGPEGGLAT-SLATEAEGVPLRFTNDLDIDDE-GNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK  227 (406)
Q Consensus       150 ~~~gl~~~d~~~~~~~-~l~~~~~~~~~~~~~~l~~d~d-G~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  227 (406)
                      ..+.|..+|..+++.. .+....   ....+..+++.++ ++++++.+                                
T Consensus       190 ~D~~v~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~p~~~~~l~sg~--------------------------------  234 (344)
T 4gqb_B          190 EDNRILLWDTRCPKPASQIGCSA---PGYLPTSLAWHPQQSEVFVFGD--------------------------------  234 (344)
T ss_dssp             TTSCEEEEETTSSSCEEECC-------CCCEEEEEECSSCTTEEEEEE--------------------------------
T ss_pred             cccccccccccccceeeeeecce---eeccceeeeecCCCCcceEEec--------------------------------
Confidence            4567889998876533 222111   1224667888875 46666532                                


Q ss_pred             CCCeEEEEeCCCCeEEEeccc-CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCC---CCceEEC
Q 015463          228 DTGRVLKYDPTTKQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGY---PDNVRTN  303 (406)
Q Consensus       228 ~~g~l~~~d~~t~~~~~~~~~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~---pd~i~~d  303 (406)
                      .+|.|..||..+++......+ ....+.++++||+..++++....+.|..+++..   +  +++. +.|.   ...++++
T Consensus       235 ~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~---~--~~~~-~~~H~~~V~~v~~s  308 (344)
T 4gqb_B          235 ENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL---S--ELFR-SQAHRDFVRDATWS  308 (344)
T ss_dssp             TTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC---C--EEEE-ECCCSSCEEEEEEC
T ss_pred             cCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC---C--cEEE-EcCCCCCEEEEEEe
Confidence            247788999887764332332 234478999999866656555567787777542   2  2221 2222   3456778


Q ss_pred             CCCC-EEEEEccCCc
Q 015463          304 EKGE-FWVAIHCRRS  317 (406)
Q Consensus       304 ~~G~-lwv~~~~~~~  317 (406)
                      ++|. +.++....+.
T Consensus       309 p~~~~llas~s~D~~  323 (344)
T 4gqb_B          309 PLNHSLLTTVGWDHQ  323 (344)
T ss_dssp             SSSTTEEEEEETTSC
T ss_pred             CCCCeEEEEEcCCCe
Confidence            8876 5554443433

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.30  E-value=8.3e-05  Score=69.23  Aligned_cols=187  Identities=11%  Similarity=-0.027  Sum_probs=111.2

Q ss_pred             cCcceEEEcCCCCeeEEEecCCEEEEEeCC--c-eeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-
Q 015463           69 QGPESMAFDPLGRGPYTGVADGRILFWDGL--K-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-  144 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-  144 (406)
                      ....++++.++|+.++++..+|.|..|+..  . .......                   . ........+++.+ +++ 
T Consensus        12 ~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~-------------------~-~~~~~v~~~~~~~-~~~~   70 (342)
T 1yfq_A           12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS-------------------L-RYKHPLLCCNFID-NTDL   70 (342)
T ss_dssp             SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE-------------------E-ECSSCEEEEEEEE-SSSE
T ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceee-------------------e-ecCCceEEEEECC-CCCc
Confidence            345788899999988999999999888754  2 1111110                   0 1124467899998 566 


Q ss_pred             -EEEEeCCCcEEEEeC-CCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCC
Q 015463          145 -LYIADAYFGLMKVGP-EGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSP  222 (406)
Q Consensus       145 -L~Vad~~~gl~~~d~-~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  222 (406)
                       |+++...+.|..+|. ++++...+...   .....+.++++.+ +++.++.+.                          
T Consensus        71 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~---~~~~~v~~l~~~~-~~~l~s~~~--------------------------  120 (342)
T 1yfq_A           71 QIYVGTVQGEILKVDLIGSPSFQALTNN---EANLGICRICKYG-DDKLIAASW--------------------------  120 (342)
T ss_dssp             EEEEEETTSCEEEECSSSSSSEEECBSC---CCCSCEEEEEEET-TTEEEEEET--------------------------
T ss_pred             EEEEEcCCCeEEEEEeccCCceEecccc---CCCCceEEEEeCC-CCEEEEEcC--------------------------
Confidence             677776677999999 88876554321   0123467888888 766665432                          


Q ss_pred             CcccCCCCeEEEEeCCC---------CeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeC-CCCcceeeeec
Q 015463          223 IKITKDTGRVLKYDPTT---------KQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG-EKAGNLEAFAI  292 (406)
Q Consensus       223 ~~~~~~~g~l~~~d~~t---------~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g-~~~~~~~~~~~  292 (406)
                            +|.|..||..+         ++.......-.....+++++++  ++++ +..+.|..|++.. ...........
T Consensus       121 ------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~  191 (342)
T 1yfq_A          121 ------DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVG-MNNSQVQWFRLPLCEDDNGTIEESG  191 (342)
T ss_dssp             ------TSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEE-ESTTEEEEEESSCCTTCCCEEEECS
T ss_pred             ------CCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEE-eCCCeEEEEECCccccccceeeecC
Confidence                  36788887654         3211111222234577888766  4444 4467899998764 22111111112


Q ss_pred             CCCCCCceEECC-CCCEEEEEccC
Q 015463          293 LPGYPDNVRTNE-KGEFWVAIHCR  315 (406)
Q Consensus       293 l~g~pd~i~~d~-~G~lwv~~~~~  315 (406)
                      .......+++++ +|++.++....
T Consensus       192 ~~~~i~~i~~~~~~~~~l~~~~~d  215 (342)
T 1yfq_A          192 LKYQIRDVALLPKEQEGYACSSID  215 (342)
T ss_dssp             CSSCEEEEEECSGGGCEEEEEETT
T ss_pred             CCCceeEEEECCCCCCEEEEEecC
Confidence            233345677888 88866555443

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=98.29  E-value=0.0011  Score=61.53  Aligned_cols=187  Identities=10%  Similarity=0.050  Sum_probs=111.4

Q ss_pred             cCcccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc
Q 015463           65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (406)
Q Consensus        65 ~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~  144 (406)
                      .+.-....++++.++|+.+.+++.|+.|..|+...-+.+....                    ...+....+++++ ++.
T Consensus        62 ~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~--------------------~h~~~v~~~~~~~-~~~  120 (319)
T 3frx_A           62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV--------------------GHKSDVMSVDIDK-KAS  120 (319)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--------------------CCSSCEEEEEECT-TSC
T ss_pred             eCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEc--------------------cCCCcEEEEEEcC-CCC
Confidence            3344455678899999988999999999999976222211111                    0123467889998 555


Q ss_pred             -EEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcC------CCCEEEEeCCCchhhhccccccccccccccC
Q 015463          145 -LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD------EGNVYFTDSSTNYQRRQMQKENIPLQLCSSL  217 (406)
Q Consensus       145 -L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~------dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~  217 (406)
                       |..+...+.|..+|.++.....+...     ...+..+.+.+      ++.+.++.+                      
T Consensus       121 ~l~s~s~D~~i~vwd~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~~~~~~l~s~~----------------------  173 (319)
T 3frx_A          121 MIISGSRDKTIKVWTIKGQCLATLLGH-----NDWVSQVRVVPNEKADDDSVTIISAG----------------------  173 (319)
T ss_dssp             EEEEEETTSCEEEEETTSCEEEEECCC-----SSCEEEEEECCC------CCEEEEEE----------------------
T ss_pred             EEEEEeCCCeEEEEECCCCeEEEEecc-----CCcEEEEEEccCCCCCCCccEEEEEe----------------------
Confidence             45555556688899876655443221     12344555554      333444432                      


Q ss_pred             CCCCCCcccCCCCeEEEEeCCCCeEEEeccc-CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCC
Q 015463          218 NDPSPIKITKDTGRVLKYDPTTKQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGY  296 (406)
Q Consensus       218 ~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~  296 (406)
                                .++.+..+|..+.+......+ ....+.++++||++.+..+. ..+.|..+++...+.  ...+ .....
T Consensus       174 ----------~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~-~dg~i~iwd~~~~~~--~~~~-~~~~~  239 (319)
T 3frx_A          174 ----------NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG-KDGEIMLWNLAAKKA--MYTL-SAQDE  239 (319)
T ss_dssp             ----------TTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEE-TTCEEEEEETTTTEE--EEEE-ECCSC
T ss_pred             ----------CCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCcE--EEEe-cCCCc
Confidence                      247788999887765543333 23457899999998765544 457788888653211  1111 11222


Q ss_pred             CCceEECCCCCEEEEEc
Q 015463          297 PDNVRTNEKGEFWVAIH  313 (406)
Q Consensus       297 pd~i~~d~~G~lwv~~~  313 (406)
                      ...++++++|.+.++..
T Consensus       240 v~~~~~sp~~~~la~~~  256 (319)
T 3frx_A          240 VFSLAFSPNRYWLAAAT  256 (319)
T ss_dssp             EEEEEECSSSSEEEEEE
T ss_pred             EEEEEEcCCCCEEEEEc
Confidence            34567888887655543

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=98.28  E-value=0.00057  Score=66.13  Aligned_cols=186  Identities=14%  Similarity=0.110  Sum_probs=113.1

Q ss_pred             CcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-EEEE
Q 015463           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYIA  148 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-L~Va  148 (406)
                      ...+++++++|+.+.+++.+|.|..|+......+....                    ........+++.+ +++ |..+
T Consensus       152 ~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~--------------------~h~~~V~~v~~~p-~~~~l~s~  210 (410)
T 1vyh_C          152 SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH--------------------GHDHNVSSVSIMP-NGDHIVSA  210 (410)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCC--------------------CCSSCEEEEEECS-SSSEEEEE
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEc--------------------CCCCCEEEEEEeC-CCCEEEEE
Confidence            44788999999988999999999999876322221110                    1123467889998 555 5555


Q ss_pred             eCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCC
Q 015463          149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKD  228 (406)
Q Consensus       149 d~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  228 (406)
                      ...+.|..+|..++........    ....+..+...++|.+.++.+.                                
T Consensus       211 s~D~~i~~wd~~~~~~~~~~~~----h~~~v~~~~~~~~g~~l~s~s~--------------------------------  254 (410)
T 1vyh_C          211 SRDKTIKMWEVQTGYCVKTFTG----HREWVRMVRPNQDGTLIASCSN--------------------------------  254 (410)
T ss_dssp             ETTSEEEEEETTTCCEEEEEEC----CSSCEEEEEECTTSSEEEEEET--------------------------------
T ss_pred             eCCCeEEEEECCCCcEEEEEeC----CCccEEEEEECCCCCEEEEEcC--------------------------------
Confidence            5556788999887754321111    1124677888999988777543                                


Q ss_pred             CCeEEEEeCCCCeEEEeccc-CCCcceEEEecC--------------------CCEEEEEeCCCCeEEEEEeeCCCCcce
Q 015463          229 TGRVLKYDPTTKQTTVLLRN-LQFPNGLSLSKD--------------------KSFFVFCEGSVGRLHKYWLIGEKAGNL  287 (406)
Q Consensus       229 ~g~l~~~d~~t~~~~~~~~~-~~~~ngi~l~~d--------------------~~~l~v~~t~~~~i~~~~~~g~~~~~~  287 (406)
                      +|.+..||..+++....... ....+.++++|+                    +..+ ++....+.|..+++....  ..
T Consensus       255 D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l-~sgs~D~~i~iwd~~~~~--~~  331 (410)
T 1vyh_C          255 DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFL-LSGSRDKTIKMWDVSTGM--CL  331 (410)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEE-EEEETTSEEEEEETTTTE--EE
T ss_pred             CCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEE-EEEeCCCeEEEEECCCCc--eE
Confidence            46788888887765543322 233456778775                    3444 454556788888865321  11


Q ss_pred             eeeecCCCCCCceEECCCCCEEEEEccC
Q 015463          288 EAFAILPGYPDNVRTNEKGEFWVAIHCR  315 (406)
Q Consensus       288 ~~~~~l~g~pd~i~~d~~G~lwv~~~~~  315 (406)
                      ..+..-.+....++++++|.+.++....
T Consensus       332 ~~~~~h~~~v~~v~~~~~g~~l~s~s~D  359 (410)
T 1vyh_C          332 MTLVGHDNWVRGVLFHSGGKFILSCADD  359 (410)
T ss_dssp             EEEECCSSCEEEEEECSSSSCEEEEETT
T ss_pred             EEEECCCCcEEEEEEcCCCCEEEEEeCC
Confidence            1111111223456788888866655433

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.28  E-value=0.00014  Score=75.74  Aligned_cols=211  Identities=9%  Similarity=0.032  Sum_probs=111.9

Q ss_pred             cceEEEcCCCCeeEEEecCCEEEEEeCCcee--EEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463           71 PESMAFDPLGRGPYTGVADGRILFWDGLKWT--DFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (406)
Q Consensus        71 pe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va  148 (406)
                      ..++++++||+.++++.. +.|+.++...-.  ...                    ........+..+++++ +|+..+.
T Consensus       111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~--------------------~l~~~~~~~~~~~~SP-DG~~la~  168 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR--------------------QLTHGEGFATDAKLSP-KGGFVSF  168 (741)
T ss_dssp             SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCC--------------------BCCCSSSCEEEEEECT-TSSEEEE
T ss_pred             cceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEE--------------------EcccCCcccccccCCC-CCCEEEE
Confidence            468899999996666664 889999865210  000                    0111124467889999 6764333


Q ss_pred             eCCCcEEEEeCCCCeEEEcccccCCc------------ccccccceEEcCCCC-EEEEeCCCchhhhccc-----ccccc
Q 015463          149 DAYFGLMKVGPEGGLATSLATEAEGV------------PLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQ-----KENIP  210 (406)
Q Consensus       149 d~~~gl~~~d~~~~~~~~l~~~~~~~------------~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~-----~~~~~  210 (406)
                      ...+.|+.+|.++++...+.......            .+..+.++++.+||+ |+++..... ....+.     .+...
T Consensus       169 ~~~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~-~~~~~~~~~~~p~~~~  247 (741)
T 2ecf_A          169 IRGRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDES-PVPVQKRYEVYADRTD  247 (741)
T ss_dssp             EETTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECT-TSCEEEEEEECSSCEE
T ss_pred             EeCCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCC-CCceEecCCCCCCccc
Confidence            33468999999988776554321110            011257789999996 666532100 000000     00000


Q ss_pred             cccc-ccCCCCCCCcccCCCCeEEEEeCCC-CeEEEeccc---CCCcceEEEecCCCEEEEEeC----CCCeEEEEEeeC
Q 015463          211 LQLC-SSLNDPSPIKITKDTGRVLKYDPTT-KQTTVLLRN---LQFPNGLSLSKDKSFFVFCEG----SVGRLHKYWLIG  281 (406)
Q Consensus       211 ~~~~-~e~~~~~~~~~~~~~g~l~~~d~~t-~~~~~~~~~---~~~~ngi~l~~d~~~l~v~~t----~~~~i~~~~~~g  281 (406)
                      ...+ ..  ..+   .......|+.+|.++ ++...+...   ......+++ +|++.++++..    ....|+.+++.+
T Consensus       248 ~~~~~~~--~~g---~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~  321 (741)
T 2ecf_A          248 VIEQRYP--AAG---DANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLAS  321 (741)
T ss_dssp             EEEEECC--BTT---SCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTT
T ss_pred             ceEeecC--CCC---CCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCC
Confidence            0000 00  000   000112688999988 776655422   223457889 99998887653    124677777653


Q ss_pred             CCCcceeeeec-CCC---CCCceEECCCCCEEEEE
Q 015463          282 EKAGNLEAFAI-LPG---YPDNVRTNEKGEFWVAI  312 (406)
Q Consensus       282 ~~~~~~~~~~~-l~g---~pd~i~~d~~G~lwv~~  312 (406)
                      .+.  ..++.. ..+   ....+++++||+++++.
T Consensus       322 g~~--~~~~~~~~~~~~~~~~~~~~spdg~~~~~~  354 (741)
T 2ecf_A          322 NQQ--RVLAHETSPTWVPLHNSLRFLDDGSILWSS  354 (741)
T ss_dssp             CCE--EEEEEEECSSCCCCCSCCEECTTSCEEEEE
T ss_pred             Cce--EEEEEcCCCCcCCcCCceEECCCCeEEEEe
Confidence            221  112221 112   23467888999855444

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=98.28  E-value=0.00072  Score=64.87  Aligned_cols=160  Identities=13%  Similarity=0.126  Sum_probs=102.0

Q ss_pred             CcccCcceEEEcCCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCC
Q 015463           66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT  142 (406)
Q Consensus        66 ~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~  142 (406)
                      +.-....++++.++|+.+++++.+|.|..|+..   ....+.                       ...+....+++.+ +
T Consensus       137 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-----------------------~h~~~v~~~~~~~-~  192 (420)
T 3vl1_A          137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI-----------------------GHRATVTDIAIID-R  192 (420)
T ss_dssp             SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE-----------------------CCSSCEEEEEEET-T
T ss_pred             cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc-----------------------CCCCcEEEEEEcC-C
Confidence            333456789999999989999999999999876   122221                       1124467899998 5


Q ss_pred             Cc-EEEEeCCCcEEEEeCCCCeEEEcccccCCc--------------------ccccccceEEcCCCCEEEEeCCCchhh
Q 015463          143 GD-LYIADAYFGLMKVGPEGGLATSLATEAEGV--------------------PLRFTNDLDIDDEGNVYFTDSSTNYQR  201 (406)
Q Consensus       143 g~-L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~--------------------~~~~~~~l~~d~dG~ly~t~~~~~~~~  201 (406)
                      ++ |+.+...+.|..+|..+++...........                    ....+..++++++|++.++.+      
T Consensus       193 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------  266 (420)
T 3vl1_A          193 GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH------  266 (420)
T ss_dssp             TTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE------
T ss_pred             CCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc------
Confidence            55 555655566999998877643322110000                    012345566777886655532      


Q ss_pred             hccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec-cc-CCCcceEEEecCCCEEEEEeCCCCeEEEEEe
Q 015463          202 RQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL-RN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWL  279 (406)
Q Consensus       202 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~  279 (406)
                                                .+|.|..||..+++..... .. ......++++++++.++++....+.|..+++
T Consensus       267 --------------------------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~  320 (420)
T 3vl1_A          267 --------------------------VSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDL  320 (420)
T ss_dssp             --------------------------TTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEET
T ss_pred             --------------------------CCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEc
Confidence                                      2477999998877644332 22 2345689999999834444455688999987


Q ss_pred             eC
Q 015463          280 IG  281 (406)
Q Consensus       280 ~g  281 (406)
                      ..
T Consensus       321 ~~  322 (420)
T 3vl1_A          321 RS  322 (420)
T ss_dssp             TC
T ss_pred             CC
Confidence            64

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.27  E-value=6.4e-05  Score=71.62  Aligned_cols=156  Identities=9%  Similarity=-0.071  Sum_probs=92.9

Q ss_pred             eEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEe-
Q 015463           73 SMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD-  149 (406)
Q Consensus        73 ~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad-  149 (406)
                      +++++++|+.|++...++.|+.++..  +.+.+......                    ........+++ ++.++++. 
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~--------------------~~~~~~~~~~~-dg~~l~~~~  143 (388)
T 3pe7_A           85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAE--------------------WVGYGTWVANS-DCTKLVGIE  143 (388)
T ss_dssp             SCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT--------------------EEEEEEEEECT-TSSEEEEEE
T ss_pred             ceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhh--------------------cccccceeECC-CCCeecccc
Confidence            56899999988888888899999976  22222211100                    00011123355 66665531 


Q ss_pred             ----------------------CCCcEEEEeCCCCeEEEcccccCCcccccccceEEcC-CCC-EEEEeCCCchhhhccc
Q 015463          150 ----------------------AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGN-VYFTDSSTNYQRRQMQ  205 (406)
Q Consensus       150 ----------------------~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~-dG~-ly~t~~~~~~~~~~~~  205 (406)
                                            ....|+.+|.++++.+.+....     ..+.++.+.+ ||+ |.++.... .      
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-----~~~~~~~~sp~dg~~l~~~~~~~-~------  211 (388)
T 3pe7_A          144 IRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQEN-----QWLGHPIYRPYDDSTVAFCHEGP-H------  211 (388)
T ss_dssp             EEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEES-----SCEEEEEEETTEEEEEEEEECSC-T------
T ss_pred             ccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCC-----ccccccEECCCCCCEEEEEEecC-C------
Confidence                                  1246999999988877664321     2356788999 885 44443210 0      


Q ss_pred             cccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCC--CcceEEEecCCCEEEE-EeCCCC---eEEEEEe
Q 015463          206 KENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQ--FPNGLSLSKDKSFFVF-CEGSVG---RLHKYWL  279 (406)
Q Consensus       206 ~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~--~~ngi~l~~d~~~l~v-~~t~~~---~i~~~~~  279 (406)
                                          .....+|+.+|.++++.+.+.....  ....++++||++.+++ +.....   .|+++++
T Consensus       212 --------------------~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~  271 (388)
T 3pe7_A          212 --------------------DLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADP  271 (388)
T ss_dssp             --------------------TTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECT
T ss_pred             --------------------CCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEec
Confidence                                0113479999998777766654331  2345789999997744 433222   3888887


Q ss_pred             eC
Q 015463          280 IG  281 (406)
Q Consensus       280 ~g  281 (406)
                      ++
T Consensus       272 ~~  273 (388)
T 3pe7_A          272 ET  273 (388)
T ss_dssp             TT
T ss_pred             CC
Confidence            64

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=98.25  E-value=0.00092  Score=62.72  Aligned_cols=197  Identities=13%  Similarity=0.048  Sum_probs=115.5

Q ss_pred             cCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC-
Q 015463           65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK-  141 (406)
Q Consensus        65 ~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~-  141 (406)
                      .+.-....+++++++|+.+.++..+|.|..|+..  .........                    ...+....+++.++ 
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--------------------~h~~~v~~~~~~~~~   67 (379)
T 3jrp_A            8 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT--------------------GHEGPVWRVDWAHPK   67 (379)
T ss_dssp             EECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC--------------------CCSSCEEEEEECCGG
T ss_pred             cCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEec--------------------CCCCcEEEEEeCCCC
Confidence            3344456788999999988899999999988754  222221111                    11234567888752 


Q ss_pred             -CCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCC--CCEEEEeCCCchhhhccccccccccccccCC
Q 015463          142 -TGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDE--GNVYFTDSSTNYQRRQMQKENIPLQLCSSLN  218 (406)
Q Consensus       142 -~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~d--G~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~  218 (406)
                       ...|+.+...+.|..+|.++++........ + ....+.++++.++  |.+.++.+.                      
T Consensus        68 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~~l~~~~~----------------------  123 (379)
T 3jrp_A           68 FGTILASCSYDGKVLIWKEENGRWSQIAVHA-V-HSASVNSVQWAPHEYGPLLLVASS----------------------  123 (379)
T ss_dssp             GCSEEEEEETTSCEEEEEEETTEEEEEEEEC-C-CSSCEEEEEECCGGGCSEEEEEET----------------------
T ss_pred             CCCEEEEeccCCEEEEEEcCCCceeEeeeec-C-CCcceEEEEeCCCCCCCEEEEecC----------------------
Confidence             234556665566888888877533322211 1 1234778899888  876666432                      


Q ss_pred             CCCCCcccCCCCeEEEEeCCCCe---EEEecccCCCcceEEEec-------------CCCEEEEEeCCCCeEEEEEeeCC
Q 015463          219 DPSPIKITKDTGRVLKYDPTTKQ---TTVLLRNLQFPNGLSLSK-------------DKSFFVFCEGSVGRLHKYWLIGE  282 (406)
Q Consensus       219 ~~~~~~~~~~~g~l~~~d~~t~~---~~~~~~~~~~~ngi~l~~-------------d~~~l~v~~t~~~~i~~~~~~g~  282 (406)
                                +|.+..||..++.   ...+.........+++++             |++.++.+. ..+.|..|++...
T Consensus       124 ----------d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~  192 (379)
T 3jrp_A          124 ----------DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSD  192 (379)
T ss_dssp             ----------TSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEE-TTSCEEEEEEETT
T ss_pred             ----------CCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEe-CCCeEEEEEecCC
Confidence                      3678888887662   122222233446788888             577665554 4678888887643


Q ss_pred             CCcceeeeecCCC---CCCceEECCC---CCEEEEEccCCc
Q 015463          283 KAGNLEAFAILPG---YPDNVRTNEK---GEFWVAIHCRRS  317 (406)
Q Consensus       283 ~~~~~~~~~~l~g---~pd~i~~d~~---G~lwv~~~~~~~  317 (406)
                      ... ......+.+   ....++++++   |++.++......
T Consensus       193 ~~~-~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~  232 (379)
T 3jrp_A          193 AQT-YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT  232 (379)
T ss_dssp             TTE-EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC
T ss_pred             Ccc-eeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCE
Confidence            211 111112222   2345677888   666665544433

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.24  E-value=6.9e-05  Score=71.32  Aligned_cols=187  Identities=10%  Similarity=-0.007  Sum_probs=110.7

Q ss_pred             cceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcE-EEEe
Q 015463           71 PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL-YIAD  149 (406)
Q Consensus        71 pe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L-~Vad  149 (406)
                      ..++++.++|+.+.++..+|.|..|+....+......                    ...+....+++.+++..+ ..+.
T Consensus       142 V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~--------------------~h~~~v~~v~~s~~~~~~~~s~~  201 (357)
T 4g56_B          142 VKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYN--------------------AHSSEVNCVAACPGKDTIFLSCG  201 (357)
T ss_dssp             EEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEEC--------------------CCSSCEEEEEECTTCSSCEEEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc--------------------CCCCCEEEEEEccCCCceeeeec
Confidence            4678999999988999999999999976222221111                    012345678888733334 4454


Q ss_pred             CCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCC-CEEEEeCCCchhhhccccccccccccccCCCCCCCcccCC
Q 015463          150 AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKD  228 (406)
Q Consensus       150 ~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  228 (406)
                      ..+.|..+|.++++.......  ......+..+++.+++ .++++.+                                .
T Consensus       202 ~dg~v~~wd~~~~~~~~~~~~--~~~~~~v~~v~~sp~~~~~la~g~--------------------------------~  247 (357)
T 4g56_B          202 EDGRILLWDTRKPKPATRIDF--CASDTIPTSVTWHPEKDDTFACGD--------------------------------E  247 (357)
T ss_dssp             TTSCEEECCTTSSSCBCBCCC--TTCCSCEEEEEECTTSTTEEEEEE--------------------------------S
T ss_pred             cCCceEEEECCCCceeeeeee--ccccccccchhhhhcccceEEEee--------------------------------c
Confidence            456688888877643221111  1112346778888765 5554432                                1


Q ss_pred             CCeEEEEeCCCCeEEEeccc-CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecC--CCCCCceEECC-
Q 015463          229 TGRVLKYDPTTKQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAIL--PGYPDNVRTNE-  304 (406)
Q Consensus       229 ~g~l~~~d~~t~~~~~~~~~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l--~g~pd~i~~d~-  304 (406)
                      ++.|..||..+++......+ ....+.++++++++.++++....+.|..+++...     +.+..+  .+....+++.+ 
T Consensus       248 d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~-----~~~~~~~H~~~V~~vafsP~  322 (357)
T 4g56_B          248 TGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS-----EVFRDLSHRDFVTGVAWSPL  322 (357)
T ss_dssp             SSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC-----EEEEECCCSSCEEEEEECSS
T ss_pred             ccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC-----cEeEECCCCCCEEEEEEeCC
Confidence            36788899887754333332 2334689999998665555555567877776432     222211  12234567775 


Q ss_pred             CCCEEEEEccCC
Q 015463          305 KGEFWVAIHCRR  316 (406)
Q Consensus       305 ~G~lwv~~~~~~  316 (406)
                      +|.+.++....+
T Consensus       323 d~~~l~s~s~Dg  334 (357)
T 4g56_B          323 DHSKFTTVGWDH  334 (357)
T ss_dssp             STTEEEEEETTS
T ss_pred             CCCEEEEEcCCC
Confidence            687776655443

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=98.23  E-value=0.0013  Score=63.59  Aligned_cols=154  Identities=12%  Similarity=0.138  Sum_probs=100.7

Q ss_pred             cccCcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc
Q 015463           67 QIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (406)
Q Consensus        67 ~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~  144 (406)
                      .-....++++.+++..+.+++.+|.|..|+..  ......                      ....+....+++++ +++
T Consensus       107 h~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l----------------------~~h~~~V~~v~~~~-~~~  163 (410)
T 1vyh_C          107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL----------------------KGHTDSVQDISFDH-SGK  163 (410)
T ss_dssp             CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE----------------------CCCSSCEEEEEECT-TSS
T ss_pred             cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEE----------------------eccCCcEEEEEEcC-CCC
Confidence            33445788999999989999999999999976  211110                      01123467899998 565


Q ss_pred             E-EEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCC
Q 015463          145 L-YIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPI  223 (406)
Q Consensus       145 L-~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  223 (406)
                      + ..+...+.|..+|..+++......   + ....+.++++.++|+..++.+.                           
T Consensus       164 ~l~sgs~D~~i~iwd~~~~~~~~~~~---~-h~~~V~~v~~~p~~~~l~s~s~---------------------------  212 (410)
T 1vyh_C          164 LLASCSADMTIKLWDFQGFECIRTMH---G-HDHNVSSVSIMPNGDHIVSASR---------------------------  212 (410)
T ss_dssp             EEEEEETTSCCCEEETTSSCEEECCC---C-CSSCEEEEEECSSSSEEEEEET---------------------------
T ss_pred             EEEEEeCCCeEEEEeCCCCceeEEEc---C-CCCCEEEEEEeCCCCEEEEEeC---------------------------
Confidence            4 455555668888887765432111   1 1234778999999987776532                           


Q ss_pred             cccCCCCeEEEEeCCCCeEEEecc-cCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          224 KITKDTGRVLKYDPTTKQTTVLLR-NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       224 ~~~~~~g~l~~~d~~t~~~~~~~~-~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                           ++.+..||..+++...... .......+++++|++.+..+. ..+.|..+++.
T Consensus       213 -----D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s-~D~~v~vwd~~  264 (410)
T 1vyh_C          213 -----DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS-NDQTVRVWVVA  264 (410)
T ss_dssp             -----TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETT
T ss_pred             -----CCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEc-CCCeEEEEECC
Confidence                 4779999998876543322 223446788999998665544 45677777765

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.23  E-value=0.00025  Score=66.29  Aligned_cols=198  Identities=13%  Similarity=0.016  Sum_probs=117.3

Q ss_pred             CcceEEEcCCCCeeEEEecC-----CEEEEEeCC---ceeEEEeecCCCccccCCCCCcccccccCCcC--CcceEEEEe
Q 015463           70 GPESMAFDPLGRGPYTGVAD-----GRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHIC--GRPLGLRFD  139 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~~-----g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~gi~~d  139 (406)
                      ...++++.++|+.++++..+     |.|..|+..   ....+.........            ......  .....++++
T Consensus       117 ~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~  184 (369)
T 3zwl_B          117 PVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIH------------KIITHEGLDAATVAGWS  184 (369)
T ss_dssp             CEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSE------------EEECCTTCCCEEEEEEC
T ss_pred             CeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceee------------eccCCcCccceeEEEEc
Confidence            45788999999988888888     889888754   11111111100000            000011  246788898


Q ss_pred             CCCCcEEEEeCCCcEEEEeCCC-CeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCC
Q 015463          140 KKTGDLYIADAYFGLMKVGPEG-GLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLN  218 (406)
Q Consensus       140 ~~~g~L~Vad~~~gl~~~d~~~-~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~  218 (406)
                      ++...|+++...+.|..+|..+ ++........    ...+.++++.++|++.++.+.                      
T Consensus       185 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~----------------------  238 (369)
T 3zwl_B          185 TKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLH----EKSISDMQFSPDLTYFITSSR----------------------  238 (369)
T ss_dssp             GGGCEEEEEETTSEEEEEETTTTTEEEEEEECC----SSCEEEEEECTTSSEEEEEET----------------------
T ss_pred             CCCCEEEEEcCCCEEEEEECCCCcEeEEEEecC----CCceeEEEECCCCCEEEEecC----------------------
Confidence            8333466666667799999887 3332211111    234678899999987666432                      


Q ss_pred             CCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCC-------------eEEEEEeeCCCCc
Q 015463          219 DPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVG-------------RLHKYWLIGEKAG  285 (406)
Q Consensus       219 ~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~-------------~i~~~~~~g~~~~  285 (406)
                                +|.|..||..+++.............++++++++.++++.....             .+..++....  .
T Consensus       239 ----------d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~--~  306 (369)
T 3zwl_B          239 ----------DTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE--E  306 (369)
T ss_dssp             ----------TSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC--C
T ss_pred             ----------CceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC--c
Confidence                      37899999988876655544455678999999998887765432             4555554321  1


Q ss_pred             ceeeeecCCCCCCceEECCCCCEEEEEccCCc
Q 015463          286 NLEAFAILPGYPDNVRTNEKGEFWVAIHCRRS  317 (406)
Q Consensus       286 ~~~~~~~l~g~pd~i~~d~~G~lwv~~~~~~~  317 (406)
                      ....+..-.+....++++++|++.++......
T Consensus       307 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~  338 (369)
T 3zwl_B          307 EIGRVQGHFGPLNTVAISPQGTSYASGGEDGF  338 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             chhheecccCcEEEEEECCCCCEEEEEcCCCe
Confidence            11112111223345778889987776654433

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=98.23  E-value=0.00095  Score=63.31  Aligned_cols=170  Identities=11%  Similarity=0.046  Sum_probs=100.5

Q ss_pred             cCcccCcceEEEcC-CCCeeEEEecCCEEEEEeCC--c-eeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeC
Q 015463           65 LNQIQGPESMAFDP-LGRGPYTGVADGRILFWDGL--K-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK  140 (406)
Q Consensus        65 ~~~~~gpe~i~~d~-~g~~ly~g~~~g~I~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~  140 (406)
                      .+.-....++++.+ +|+.+++++.+|.|..|+..  . ...+....     .+...     .............+++.+
T Consensus        40 ~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-----~~~~~-----~~~~~~~~~~v~~~~~~~  109 (408)
T 4a11_B           40 RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKA-----VCSIG-----RDHPDVHRYSVETVQWYP  109 (408)
T ss_dssp             CCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECE-----EEEEC-----TTCTTCCSSCEEEEEECT
T ss_pred             eccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccc-----ccccc-----ccccccCCCcEEEEEEcc
Confidence            33344567899999 99989999999999999866  1 11111000     00000     000011234567899987


Q ss_pred             CCC-cEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcC---CCCEEEEeCCCchhhhcccccccccccccc
Q 015463          141 KTG-DLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD---EGNVYFTDSSTNYQRRQMQKENIPLQLCSS  216 (406)
Q Consensus       141 ~~g-~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~---dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e  216 (406)
                      +++ .|..+...+.|..+|.++++....... .    ..+..+...+   ++.+.++..                     
T Consensus       110 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~---------------------  163 (408)
T 4a11_B          110 HDTGMFTSSSFDKTLKVWDTNTLQTADVFNF-E----ETVYSHHMSPVSTKHCLVAVGT---------------------  163 (408)
T ss_dssp             TCTTCEEEEETTSEEEEEETTTTEEEEEEEC-S----SCEEEEEECSSCSSCCEEEEEE---------------------
T ss_pred             CCCcEEEEEeCCCeEEEeeCCCCccceeccC-C----CceeeeEeecCCCCCcEEEEEc---------------------
Confidence            344 455665566799999988765433221 1    1234455544   344555432                     


Q ss_pred             CCCCCCCcccCCCCeEEEEeCCCCeEEEecc-cCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463          217 LNDPSPIKITKDTGRVLKYDPTTKQTTVLLR-NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  281 (406)
Q Consensus       217 ~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~-~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g  281 (406)
                                 .+|.|..||..+++...... .......++++++++.++++....+.|..+++..
T Consensus       164 -----------~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~  218 (408)
T 4a11_B          164 -----------RGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRR  218 (408)
T ss_dssp             -----------SSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTC
T ss_pred             -----------CCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCC
Confidence                       13679999988775433332 2234568999999986666656667888888753

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=98.21  E-value=2e-05  Score=74.93  Aligned_cols=191  Identities=9%  Similarity=-0.041  Sum_probs=106.4

Q ss_pred             CcceEEEcCCCCeeEEEecCCEEEEEeCC-c-eeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEE
Q 015463           70 GPESMAFDPLGRGPYTGVADGRILFWDGL-K-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~V  147 (406)
                      ...++++.++|+.+.+++.+|.|..|+.. . +....                    ......+....+++.+++..|..
T Consensus        13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~--------------------~~~~h~~~v~~~~~s~~~~~l~s   72 (377)
T 3dwl_C           13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR--------------------TFSDHDKIVTCVDWAPKSNRIVT   72 (377)
T ss_dssp             CCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC--------------------CBCCCSSCEEEEEECTTTCCEEE
T ss_pred             cEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE--------------------EEecCCceEEEEEEeCCCCEEEE
Confidence            45788999999988888889988888754 1 12111                    11111345678999983334566


Q ss_pred             EeCCCcEEEEeCCCCe----EEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCC
Q 015463          148 ADAYFGLMKVGPEGGL----ATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPI  223 (406)
Q Consensus       148 ad~~~gl~~~d~~~~~----~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  223 (406)
                      +...+.|..+|.++++    ...+..     ....+.++++.++|++.++.+.                           
T Consensus        73 ~s~d~~v~vwd~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~---------------------------  120 (377)
T 3dwl_C           73 CSQDRNAYVYEKRPDGTWKQTLVLLR-----LNRAATFVRWSPNEDKFAVGSG---------------------------  120 (377)
T ss_dssp             EETTSSEEEC------CCCCEEECCC-----CSSCEEEEECCTTSSCCEEEES---------------------------
T ss_pred             EeCCCeEEEEEcCCCCceeeeeEecc-----cCCceEEEEECCCCCEEEEEec---------------------------
Confidence            6656678888887765    222111     1234678888888876555422                           


Q ss_pred             cccCCCCeEEEEeCCCCe----EEEecc-cCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCC-------------c
Q 015463          224 KITKDTGRVLKYDPTTKQ----TTVLLR-NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKA-------------G  285 (406)
Q Consensus       224 ~~~~~~g~l~~~d~~t~~----~~~~~~-~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~-------------~  285 (406)
                           ++.+..||.++++    ...+.. .-.....+++++|++.++... ..+.|..+++.....             .
T Consensus       121 -----d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  194 (377)
T 3dwl_C          121 -----ARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGC-ADRKAYVLSAYVRDVDAKPEASVWGSRLP  194 (377)
T ss_dssp             -----SSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEE-SSSCEEEEEECCSSCC-CCCSCSSCSCCC
T ss_pred             -----CCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEe-CCCEEEEEEEEecccCCCccccccccccc
Confidence                 3668888887665    333333 233457899999998776554 356788888742110             0


Q ss_pred             ceeeeecC--CCCCCceEECCCCCEEEEEccCCcc
Q 015463          286 NLEAFAIL--PGYPDNVRTNEKGEFWVAIHCRRSL  318 (406)
Q Consensus       286 ~~~~~~~l--~g~pd~i~~d~~G~lwv~~~~~~~~  318 (406)
                      ..+....+  .+....++++++|++.++......+
T Consensus       195 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i  229 (377)
T 3dwl_C          195 FNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSV  229 (377)
T ss_dssp             EEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEE
T ss_pred             hhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcE
Confidence            01112122  1123356788999866655444333

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=98.20  E-value=0.0014  Score=59.74  Aligned_cols=182  Identities=13%  Similarity=0.026  Sum_probs=104.5

Q ss_pred             cCcceEEEcCCCCeeEEEecCCEEEEEeCCc---eeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcE
Q 015463           69 QGPESMAFDPLGRGPYTGVADGRILFWDGLK---WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL  145 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L  145 (406)
                      ....++++.++++.++++..+|.|..|+...   ...+.                    ...........+.++  ++.+
T Consensus        60 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~--------------------~~~~~~~~i~~~~~~--~~~l  117 (313)
T 3odt_A           60 GFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLY--------------------TLIGHQGNVCSLSFQ--DGVV  117 (313)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-C--------------------EECCCSSCEEEEEEE--TTEE
T ss_pred             ccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCccc--------------------chhhcccCEEEEEec--CCEE
Confidence            3457889999999899999999998887541   11110                    011112345677785  4677


Q ss_pred             EEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcC-CCCEEEEeCCCchhhhccccccccccccccCCCCCCCc
Q 015463          146 YIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIK  224 (406)
Q Consensus       146 ~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  224 (406)
                      +.+...+.|..+|. ......+...     ...+..++..+ +++..++.+.                            
T Consensus       118 ~~~~~d~~i~~~d~-~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~~~----------------------------  163 (313)
T 3odt_A          118 ISGSWDKTAKVWKE-GSLVYNLQAH-----NASVWDAKVVSFSENKFLTASA----------------------------  163 (313)
T ss_dssp             EEEETTSEEEEEET-TEEEEEEECC-----SSCEEEEEEEETTTTEEEEEET----------------------------
T ss_pred             EEEeCCCCEEEEcC-CcEEEecccC-----CCceeEEEEccCCCCEEEEEEC----------------------------
Confidence            77777677888882 2222222211     12345666655 6666555432                            


Q ss_pred             ccCCCCeEEEEeCCCCeEEEecc-cCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEEC
Q 015463          225 ITKDTGRVLKYDPTTKQTTVLLR-NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTN  303 (406)
Q Consensus       225 ~~~~~g~l~~~d~~t~~~~~~~~-~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d  303 (406)
                          +|.+..||.. .....+.. .......+++++++. + ++....+.|..+++...+  ....+..-.+....++++
T Consensus       164 ----d~~i~i~d~~-~~~~~~~~~~~~~i~~~~~~~~~~-~-~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~  234 (313)
T 3odt_A          164 ----DKTIKLWQND-KVIKTFSGIHNDVVRHLAVVDDGH-F-ISCSNDGLIKLVDMHTGD--VLRTYEGHESFVYCIKLL  234 (313)
T ss_dssp             ----TSCEEEEETT-EEEEEECSSCSSCEEEEEEEETTE-E-EEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEEC
T ss_pred             ----CCCEEEEecC-ceEEEEeccCcccEEEEEEcCCCe-E-EEccCCCeEEEEECCchh--hhhhhhcCCceEEEEEEe
Confidence                3678888843 23333332 334456789999987 4 444456788888875321  111222122334457788


Q ss_pred             CCCCEEEEEccC
Q 015463          304 EKGEFWVAIHCR  315 (406)
Q Consensus       304 ~~G~lwv~~~~~  315 (406)
                      ++|.+..+...+
T Consensus       235 ~~~~l~~~~~dg  246 (313)
T 3odt_A          235 PNGDIVSCGEDR  246 (313)
T ss_dssp             TTSCEEEEETTS
T ss_pred             cCCCEEEEecCC
Confidence            888766655443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.20  E-value=0.0016  Score=62.03  Aligned_cols=63  Identities=5%  Similarity=-0.032  Sum_probs=41.4

Q ss_pred             CcceEEEEeCCCCcEEEEeC----------CCcEEEEeCCCCeEEEcccccCCc--ccccccceEEcCCC-CEEEEe
Q 015463          131 GRPLGLRFDKKTGDLYIADA----------YFGLMKVGPEGGLATSLATEAEGV--PLRFTNDLDIDDEG-NVYFTD  194 (406)
Q Consensus       131 ~~p~gi~~d~~~g~L~Vad~----------~~gl~~~d~~~~~~~~l~~~~~~~--~~~~~~~l~~d~dG-~ly~t~  194 (406)
                      ..| +++++++...||++..          .+.|..+|.++.+...-.....+.  ....|.++++++|| .+|+++
T Consensus        51 ~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n  126 (361)
T 2oiz_A           51 FNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQN  126 (361)
T ss_dssp             EEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEE
T ss_pred             CCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEEC
Confidence            447 9999995557999974          134899998876543211111110  12468899999999 577776

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.20  E-value=0.00023  Score=66.89  Aligned_cols=189  Identities=9%  Similarity=-0.041  Sum_probs=110.8

Q ss_pred             cCcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEE
Q 015463           69 QGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~  146 (406)
                      ....++++.++|+.++++..+|.|..|+..  ........                    ......+..+++.+++..|+
T Consensus        53 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--------------------~~~~~~v~~~~~~~~~~~l~  112 (372)
T 1k8k_C           53 GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVI--------------------LRINRAARCVRWAPNEKKFA  112 (372)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEEC--------------------CCCSSCEEEEEECTTSSEEE
T ss_pred             CcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEe--------------------ecCCCceeEEEECCCCCEEE
Confidence            345789999999988999999999988864  22211110                    01124467899998434466


Q ss_pred             EEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCccc
Q 015463          147 IADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKIT  226 (406)
Q Consensus       147 Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~  226 (406)
                      ++...+.+..+|.+++................+.++++.++|+++++.+.                              
T Consensus       113 ~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------------------------------  162 (372)
T 1k8k_C          113 VGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC------------------------------  162 (372)
T ss_dssp             EEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET------------------------------
T ss_pred             EEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC------------------------------
Confidence            66655667777766554111101111111235778999999987766432                              


Q ss_pred             CCCCeEEEEeCC------------------CCeEEE-ecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcce
Q 015463          227 KDTGRVLKYDPT------------------TKQTTV-LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNL  287 (406)
Q Consensus       227 ~~~g~l~~~d~~------------------t~~~~~-~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~  287 (406)
                        +|.+..||..                  +++... +.........++++++++.++.+. ..+.|..|++...+  ..
T Consensus       163 --dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~--~~  237 (372)
T 1k8k_C          163 --DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS-HDSTVCLADADKKM--AV  237 (372)
T ss_dssp             --TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE-TTTEEEEEEGGGTT--EE
T ss_pred             --CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe-CCCEEEEEECCCCc--ee
Confidence              3667777732                  333332 222233457899999998776665 46788888876321  11


Q ss_pred             eeeecCCCCCCceEECCCCCEEEEE
Q 015463          288 EAFAILPGYPDNVRTNEKGEFWVAI  312 (406)
Q Consensus       288 ~~~~~l~g~pd~i~~d~~G~lwv~~  312 (406)
                      ..+..-.+....++++++|.+.++.
T Consensus       238 ~~~~~~~~~v~~~~~~~~~~~l~~~  262 (372)
T 1k8k_C          238 ATLASETLPLLAVTFITESSLVAAG  262 (372)
T ss_dssp             EEEECSSCCEEEEEEEETTEEEEEE
T ss_pred             EEEccCCCCeEEEEEecCCCEEEEE
Confidence            1222111223456777888766655

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.19  E-value=0.00037  Score=64.94  Aligned_cols=174  Identities=7%  Similarity=0.094  Sum_probs=104.2

Q ss_pred             EeCCCCcEEEEe---C-CCcEEEEeCCCCeEEEcccccCCcccccccceEEcCC-CCEEEEeCCCchhhhcccccccccc
Q 015463          138 FDKKTGDLYIAD---A-YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDE-GNVYFTDSSTNYQRRQMQKENIPLQ  212 (406)
Q Consensus       138 ~d~~~g~L~Vad---~-~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~d-G~ly~t~~~~~~~~~~~~~~~~~~~  212 (406)
                      +.++++.||.++   . ...|++++.++...+.+.... .        .+++.+ +.||+++..                
T Consensus       111 ~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~-~--------~~~~~~g~~iy~t~~g----------------  165 (302)
T 3s25_A          111 ASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHY-L--------FTCNTSDRYFYYNNPK----------------  165 (302)
T ss_dssp             EEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSC-C--------CCSEEETTEEEEECTT----------------
T ss_pred             EEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCC-c--------eEeeEECCEEEEEeCC----------------
Confidence            333367888887   2 346999999987766654331 1        122333 489999742                


Q ss_pred             ccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCC-CeEEEEEeeCCCCcceeeee
Q 015463          213 LCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV-GRLHKYWLIGEKAGNLEAFA  291 (406)
Q Consensus       213 ~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~-~~i~~~~~~g~~~~~~~~~~  291 (406)
                                      ...|++.+.+++..+.+..+   +....++|+++.+|+++... .+|++.+++|..   .+++.
T Consensus       166 ----------------~~~Iy~~~l~g~~~~~l~~~---~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~---~~~Lt  223 (302)
T 3s25_A          166 ----------------NGQLYRYDTASQSEALFYDC---NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPN---PVVLT  223 (302)
T ss_dssp             ----------------TCCEEEEETTTTEEEEEECS---CEEEEEEEETTEEEEEEGGGTTEEEEECSSSCC---CEECS
T ss_pred             ----------------CceEEEEECCCCCEEEEeCC---CccceeeecCCEEEEEEcCCCcEEEEEECCCCC---eEEEe
Confidence                            25699999987776666543   22245678999999997643 589999988642   23332


Q ss_pred             cCCCCCCceEECCCCC-EEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCCEEEEEE
Q 015463          292 ILPGYPDNVRTNEKGE-FWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLE  370 (406)
Q Consensus       292 ~l~g~pd~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~  370 (406)
                      +- .+|   .++++|. ||-+....                                     ...+.+.+.+|...+.+.
T Consensus       224 ~~-~~~---~~~~~g~~Iy~~~~~~-------------------------------------~~~i~~~~~DG~~r~~l~  262 (302)
T 3s25_A          224 EA-NIE---HYNVYGSLIFYQRGGD-------------------------------------NPALCVVKNDGTGFKELA  262 (302)
T ss_dssp             CS-CEE---EEEEETTEEEEEECSS-------------------------------------SCEEEEEETTSCCCEEEE
T ss_pred             CC-Ccc---eEEECCCEEEEEECCC-------------------------------------CcEEEEEECCCCccEEee
Confidence            11 111   2333443 43332211                                     023566677775444433


Q ss_pred             CCCCCeeeceeEEEEeCCEEEEecCCCCeEEEEeC
Q 015463          371 DSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDL  405 (406)
Q Consensus       371 ~~~g~~~~~~s~~~~~~g~Ly~Gs~~~~~i~~~~~  405 (406)
                      ..  .    +..+...+++||+.......|.++++
T Consensus       263 ~~--~----~~~i~i~~d~Iy~td~~~~~i~~~~~  291 (302)
T 3s25_A          263 KG--E----FCNINVTSQYVYFTDFVSNKEYCTST  291 (302)
T ss_dssp             ES--C----EEEEEECSSEEEEEETTTCCEEEEES
T ss_pred             CC--c----cceEEEeCCEEEEEECCCCeEEEEEC
Confidence            21  1    22455678999999988888888775

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=98.16  E-value=0.0021  Score=66.65  Aligned_cols=191  Identities=12%  Similarity=0.077  Sum_probs=116.2

Q ss_pred             cCcccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc
Q 015463           65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (406)
Q Consensus        65 ~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~  144 (406)
                      .+.-....++++.++|+.+.+++.+|.|..|+...-.......                    ...+....+++++++..
T Consensus       427 ~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~--------------------~h~~~v~~~~~s~~~~~  486 (694)
T 3dm0_A          427 TGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV--------------------GHTKDVLSVAFSLDNRQ  486 (694)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--------------------CCSSCEEEEEECTTSSC
T ss_pred             cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEe--------------------CCCCCEEEEEEeCCCCE
Confidence            3444456789999999988999999999999976211111110                    01234678999984344


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCC--CEEEEeCCCchhhhccccccccccccccCCCCCC
Q 015463          145 LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG--NVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSP  222 (406)
Q Consensus       145 L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG--~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  222 (406)
                      |..+...+.|..+|..+.....+.....+ ....+.++++.+++  .+.++.+                           
T Consensus       487 l~s~s~D~~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s---------------------------  538 (694)
T 3dm0_A          487 IVSASRDRTIKLWNTLGECKYTISEGGEG-HRDWVSCVRFSPNTLQPTIVSAS---------------------------  538 (694)
T ss_dssp             EEEEETTSCEEEECTTSCEEEEECSSTTS-CSSCEEEEEECSCSSSCEEEEEE---------------------------
T ss_pred             EEEEeCCCEEEEEECCCCcceeeccCCCC-CCCcEEEEEEeCCCCcceEEEEe---------------------------
Confidence            66666667788898766543333221111 12346788888876  3444432                           


Q ss_pred             CcccCCCCeEEEEeCCCCeEEEecccC-CCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee-cCCCCCCce
Q 015463          223 IKITKDTGRVLKYDPTTKQTTVLLRNL-QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPGYPDNV  300 (406)
Q Consensus       223 ~~~~~~~g~l~~~d~~t~~~~~~~~~~-~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~-~l~g~pd~i  300 (406)
                           .+|.|..+|..+++......+. ...+.+++++|++.+..+ ...+.|..+++...   + .+.. ........+
T Consensus       539 -----~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg-~~Dg~i~iwd~~~~---~-~~~~~~~~~~v~~~  608 (694)
T 3dm0_A          539 -----WDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASG-GKDGVVLLWDLAEG---K-KLYSLEANSVIHAL  608 (694)
T ss_dssp             -----TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSBCEEEETTTT---E-EEECCBCSSCEEEE
T ss_pred             -----CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEE-eCCCeEEEEECCCC---c-eEEEecCCCcEEEE
Confidence                 2477899998887765544332 345789999999876554 44577888886532   1 1111 112223456


Q ss_pred             EECCCCCEEEEEc
Q 015463          301 RTNEKGEFWVAIH  313 (406)
Q Consensus       301 ~~d~~G~lwv~~~  313 (406)
                      +++++|.+.++..
T Consensus       609 ~~sp~~~~l~~~~  621 (694)
T 3dm0_A          609 CFSPNRYWLCAAT  621 (694)
T ss_dssp             EECSSSSEEEEEE
T ss_pred             EEcCCCcEEEEEc
Confidence            7788887665543

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.15  E-value=0.00022  Score=68.03  Aligned_cols=190  Identities=10%  Similarity=0.020  Sum_probs=114.5

Q ss_pred             cceEEEcCCCCeeEEEe--cCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463           71 PESMAFDPLGRGPYTGV--ADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (406)
Q Consensus        71 pe~i~~d~~g~~ly~g~--~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va  148 (406)
                      ..++++.|||+.+.+++  .++.|..|+....+......                    + .+...+++|.+ +|.+++.
T Consensus       136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~--------------------~-~~~V~~v~fsp-dg~~l~s  193 (365)
T 4h5i_A          136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE--------------------T-RGEVKDLHFST-DGKVVAY  193 (365)
T ss_dssp             EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE--------------------C-SSCCCEEEECT-TSSEEEE
T ss_pred             EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC--------------------C-CCceEEEEEcc-CCceEEe
Confidence            34689999999766655  57889999977222221111                    1 23467899999 7887777


Q ss_pred             eCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCC
Q 015463          149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKD  228 (406)
Q Consensus       149 d~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  228 (406)
                      ....++.+++..++........  ......++.+++.++|...++.+..                            ...
T Consensus       194 ~s~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~v~fspdg~~l~~~s~d----------------------------~~~  243 (365)
T 4h5i_A          194 ITGSSLEVISTVTGSCIARKTD--FDKNWSLSKINFIADDTVLIAASLK----------------------------KGK  243 (365)
T ss_dssp             ECSSCEEEEETTTCCEEEEECC--CCTTEEEEEEEEEETTEEEEEEEES----------------------------SSC
T ss_pred             ccceeEEEEEeccCcceeeeec--CCCCCCEEEEEEcCCCCEEEEEecC----------------------------Ccc
Confidence            6677888888776654322111  1112346788999999877765321                            001


Q ss_pred             CCeEEEEeCCCCeEEE-----ecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeec-CCCC---CCc
Q 015463          229 TGRVLKYDPTTKQTTV-----LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI-LPGY---PDN  299 (406)
Q Consensus       229 ~g~l~~~d~~t~~~~~-----~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~-l~g~---pd~  299 (406)
                      ...+..++........     +.......+.++++||++.+.... ..+.|..+++..   +  +.... +.|.   ...
T Consensus       244 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs-~D~~V~iwd~~~---~--~~~~~~~~gH~~~V~~  317 (365)
T 4h5i_A          244 GIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS-NDNSIALVKLKD---L--SMSKIFKQAHSFAITE  317 (365)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE-TTSCEEEEETTT---T--EEEEEETTSSSSCEEE
T ss_pred             eeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc-CCCEEEEEECCC---C--cEEEEecCcccCCEEE
Confidence            1135556655444322     222223346789999999775554 457788888652   2  12221 2333   345


Q ss_pred             eEECCCCCEEEEEccCCcc
Q 015463          300 VRTNEKGEFWVAIHCRRSL  318 (406)
Q Consensus       300 i~~d~~G~lwv~~~~~~~~  318 (406)
                      +++++||++.++.....++
T Consensus       318 v~fSpdg~~laS~S~D~tv  336 (365)
T 4h5i_A          318 VTISPDSTYVASVSAANTI  336 (365)
T ss_dssp             EEECTTSCEEEEEETTSEE
T ss_pred             EEECCCCCEEEEEeCCCeE
Confidence            7889999988877655444

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.15  E-value=0.00081  Score=67.79  Aligned_cols=192  Identities=12%  Similarity=0.008  Sum_probs=110.8

Q ss_pred             cCcceEEEcCCCCeeEEEecCCEEEEEeCCce----eEEEeecCCCccccCCCCCcccccccCCcCCc-ceEEEEeC--C
Q 015463           69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKW----TDFAFTSNNRSELCNPKPIATSYLKNEHICGR-PLGLRFDK--K  141 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~gi~~d~--~  141 (406)
                      ..+.+++++++|+.+.++. ++.|..|+.+..    .....                    .....+. +..+++.+  +
T Consensus        19 ~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~--------------------~~~h~~~~v~~~~~sp~~~   77 (615)
T 1pgu_A           19 NFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQ--------------------FTGHGSSVVTTVKFSPIKG   77 (615)
T ss_dssp             TCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEE--------------------ECTTTTSCEEEEEECSSTT
T ss_pred             CceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceE--------------------EecCCCceEEEEEECcCCC
Confidence            3567889999999666666 788988886521    11111                    1111344 67899998  6


Q ss_pred             CCcEEEEeCCCcEEEEeCCCC------eEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccc
Q 015463          142 TGDLYIADAYFGLMKVGPEGG------LATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCS  215 (406)
Q Consensus       142 ~g~L~Vad~~~gl~~~d~~~~------~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~  215 (406)
                      ...|..+...+.|..+|..++      ..+..... .+ ....+.++++.++|...++....                  
T Consensus        78 ~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~-~~-~~~~v~~~~~s~~~~~l~~~~~~------------------  137 (615)
T 1pgu_A           78 SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEF-QV-LAGPISDISWDFEGRRLCVVGEG------------------  137 (615)
T ss_dssp             CCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEE-EC-CSSCEEEEEECTTSSEEEEEECC------------------
T ss_pred             CCEEEEecCCCEEEEEeCCCCcccccccccccchh-hc-ccccEEEEEEeCCCCEEEEeccC------------------
Confidence            566777776667888887544      22221111 11 12347789999999876664321                  


Q ss_pred             cCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCC
Q 015463          216 SLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPG  295 (406)
Q Consensus       216 e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g  295 (406)
                                ....+.++.+|.. .....+.........++++++++.++++....+.|..+++...+  ....+..-.+
T Consensus       138 ----------~~~~~~v~~~d~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~--~~~~~~~~~~  204 (615)
T 1pgu_A          138 ----------RDNFGVFISWDSG-NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK--FSASDRTHHK  204 (615)
T ss_dssp             ----------SSCSEEEEETTTC-CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE--EEEEECSSSC
T ss_pred             ----------CCCccEEEEEECC-CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc--eeeeecccCC
Confidence                      1113568888732 33333333334457899999998555555566788888854211  1111111111


Q ss_pred             ---CCCceEECCC-CCEEEEEcc
Q 015463          296 ---YPDNVRTNEK-GEFWVAIHC  314 (406)
Q Consensus       296 ---~pd~i~~d~~-G~lwv~~~~  314 (406)
                         ....++++++ |++.++...
T Consensus       205 ~~~~v~~~~~~~~~~~~l~~~~~  227 (615)
T 1pgu_A          205 QGSFVRDVEFSPDSGEFVITVGS  227 (615)
T ss_dssp             TTCCEEEEEECSTTCCEEEEEET
T ss_pred             CCceEEEEEECCCCCCEEEEEeC
Confidence               2335677888 886655443

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.15  E-value=0.0004  Score=67.98  Aligned_cols=191  Identities=9%  Similarity=0.038  Sum_probs=117.6

Q ss_pred             CcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCC---Cc-E
Q 015463           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT---GD-L  145 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~---g~-L  145 (406)
                      .+.+++++++|+.++++..+|.|+.++........        .+..        ......+.+..+++.+ +   +. |
T Consensus       151 ~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~--------~~~~--------~~~~h~~~v~~~~~sp-~~~~~~~l  213 (450)
T 2vdu_B          151 RPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEK--------FTQE--------PILGHVSMLTDVHLIK-DSDGHQFI  213 (450)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSS--------CCCC--------CSEECSSCEEEEEEEE-CTTSCEEE
T ss_pred             CceEEEEcCCCCEEEEEeCCCcEEEEecCCccccc--------ccce--------eeecccCceEEEEEcC-CCCCCcEE
Confidence            45789999999989999999999999864110000        0000        0011134567899998 5   54 5


Q ss_pred             EEEeCCCcEEEEeCCCCeEE-EcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCc
Q 015463          146 YIADAYFGLMKVGPEGGLAT-SLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIK  224 (406)
Q Consensus       146 ~Vad~~~gl~~~d~~~~~~~-~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  224 (406)
                      +.++..+.|..+|..+++.. .+...    ....+.++++. +|.+.++.+.                            
T Consensus       214 ~s~~~d~~i~vwd~~~~~~~~~~~~~----h~~~v~~~~~s-d~~~l~s~~~----------------------------  260 (450)
T 2vdu_B          214 ITSDRDEHIKISHYPQCFIVDKWLFG----HKHFVSSICCG-KDYLLLSAGG----------------------------  260 (450)
T ss_dssp             EEEETTSCEEEEEESCTTCEEEECCC----CSSCEEEEEEC-STTEEEEEES----------------------------
T ss_pred             EEEcCCCcEEEEECCCCceeeeeecC----CCCceEEEEEC-CCCEEEEEeC----------------------------
Confidence            55555567888888766532 21111    12357788999 8887776532                            


Q ss_pred             ccCCCCeEEEEeCCCCeEEEeccc--------------------------CCCcceEEEecCCCEEEEEeCCCCeEEEEE
Q 015463          225 ITKDTGRVLKYDPTTKQTTVLLRN--------------------------LQFPNGLSLSKDKSFFVFCEGSVGRLHKYW  278 (406)
Q Consensus       225 ~~~~~g~l~~~d~~t~~~~~~~~~--------------------------~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~  278 (406)
                          ++.|..||..+++.......                          -.....+++++|++.++++....+.|..|+
T Consensus       261 ----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~  336 (450)
T 2vdu_B          261 ----DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILE  336 (450)
T ss_dssp             ----SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEE
T ss_pred             ----CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence                47899999888764332210                          112357889999999988875678898888


Q ss_pred             eeCCCCcceeeee--cCCCCCCceEECCCCCEEEEEccC
Q 015463          279 LIGEKAGNLEAFA--ILPGYPDNVRTNEKGEFWVAIHCR  315 (406)
Q Consensus       279 ~~g~~~~~~~~~~--~l~g~pd~i~~d~~G~lwv~~~~~  315 (406)
                      +.....+..+...  ...+.+..+++++ +.+|++....
T Consensus       337 ~~~~~~~~l~~~~~~~~~~~v~~~~~~~-~~~~v~~~~~  374 (450)
T 2vdu_B          337 MSEKQKGDLALKQIITFPYNVISLSAHN-DEFQVTLDNK  374 (450)
T ss_dssp             ECSSSTTCEEEEEEEECSSCEEEEEEET-TEEEEEECCT
T ss_pred             eccCCCCceeeccEeccCCceEEEEecC-CcEEEEEecc
Confidence            8211122222222  2234556677877 4588877543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.14  E-value=0.00068  Score=65.07  Aligned_cols=181  Identities=13%  Similarity=0.007  Sum_probs=101.0

Q ss_pred             cCcceEEEcCCCCeeEEEec--CCEEEEEeCCceeEEEe-ecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcE
Q 015463           69 QGPESMAFDPLGRGPYTGVA--DGRILFWDGLKWTDFAF-TSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL  145 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~--~g~I~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L  145 (406)
                      ..|+.++++++|+.+|+...  ++.|..+| +..+.... ..                     .   |-++.+.+...+.
T Consensus       125 ~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~---------------------~---~~~~~~~~~~~~~  179 (373)
T 2mad_H          125 PYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS---------------------S---PTCYHIHPGAPST  179 (373)
T ss_pred             CCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC---------------------C---CceEEEEeCCCce
Confidence            46899999999999999864  47899999 72222211 10                     0   1112333324456


Q ss_pred             EEEeCC-CcEEEEeCCCCeEEEccc--c--cCCcccccccceEEcC-CCCEEEEeCCCchhhhccccccccccccccCCC
Q 015463          146 YIADAY-FGLMKVGPEGGLATSLAT--E--AEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKENIPLQLCSSLND  219 (406)
Q Consensus       146 ~Vad~~-~gl~~~d~~~~~~~~l~~--~--~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~  219 (406)
                      |++... +.+..++. +++......  .  ....+.  .......+ ++.+|+....                       
T Consensus       180 ~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~-----------------------  233 (373)
T 2mad_H          180 FYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNL--LTQPAQANKSGRIVWPVYS-----------------------  233 (373)
T ss_pred             EEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcce--eecceeEecCCEEEEEcCC-----------------------
Confidence            666554 45777777 554331111  0  011110  11122223 3455555422                       


Q ss_pred             CCCCcccCCCCeEEEEeCCCCeEEEec----------ccCCCcce---EEEecCCCEEEEEeCC---------CCeEEEE
Q 015463          220 PSPIKITKDTGRVLKYDPTTKQTTVLL----------RNLQFPNG---LSLSKDKSFFVFCEGS---------VGRLHKY  277 (406)
Q Consensus       220 ~~~~~~~~~~g~l~~~d~~t~~~~~~~----------~~~~~~ng---i~l~~d~~~l~v~~t~---------~~~i~~~  277 (406)
                                +.++.+|..++..+...          .....|.|   +++++|++.+|++...         .+.|+++
T Consensus       234 ----------~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VI  303 (373)
T 2mad_H          234 ----------GKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV  303 (373)
T ss_pred             ----------ceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEE
Confidence                      56777887654322211          01112444   8899999999997542         3579999


Q ss_pred             EeeCCCCcceeeeecCCCCCCceEECCCCC-EEEEEc
Q 015463          278 WLIGEKAGNLEAFAILPGYPDNVRTNEKGE-FWVAIH  313 (406)
Q Consensus       278 ~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~-lwv~~~  313 (406)
                      +.+..   +..-....++.|.++++++||+ +|++.+
T Consensus       304 D~~t~---~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~  337 (373)
T 2mad_H          304 TGLVG---QTSSQISLGHDVDAISVAQDGGPDLYALS  337 (373)
T ss_pred             ECCCC---EEEEEEECCCCcCeEEECCCCCeEEEEEc
Confidence            97532   2111224566799999999999 666654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.13  E-value=0.0018  Score=65.15  Aligned_cols=182  Identities=13%  Similarity=0.131  Sum_probs=108.2

Q ss_pred             cceEEEcC--CCCeeEEEecCCEEEEEeCC-c------eeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC
Q 015463           71 PESMAFDP--LGRGPYTGVADGRILFWDGL-K------WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK  141 (406)
Q Consensus        71 pe~i~~d~--~g~~ly~g~~~g~I~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~  141 (406)
                      ..++++.+  +|+.++++..+|.|..|+.. .      .......                   ..........+++++ 
T Consensus        67 v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~-------------------~~~~~~~v~~~~~s~-  126 (615)
T 1pgu_A           67 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSE-------------------FQVLAGPISDISWDF-  126 (615)
T ss_dssp             EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEE-------------------EECCSSCEEEEEECT-
T ss_pred             EEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccch-------------------hhcccccEEEEEEeC-
Confidence            57899999  99989999999999998763 1      1111100                   011124467899998 


Q ss_pred             CCc-EEEEeCC----CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccc
Q 015463          142 TGD-LYIADAY----FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCS  215 (406)
Q Consensus       142 ~g~-L~Vad~~----~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~  215 (406)
                      +++ |.++...    ..|+.+|. +.....+..     ....+..+++.++|. +.++.+.                   
T Consensus       127 ~~~~l~~~~~~~~~~~~v~~~d~-~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~-------------------  181 (615)
T 1pgu_A          127 EGRRLCVVGEGRDNFGVFISWDS-GNSLGEVSG-----HSQRINACHLKQSRPMRSMTVGD-------------------  181 (615)
T ss_dssp             TSSEEEEEECCSSCSEEEEETTT-CCEEEECCS-----CSSCEEEEEECSSSSCEEEEEET-------------------
T ss_pred             CCCEEEEeccCCCCccEEEEEEC-CCcceeeec-----CCccEEEEEECCCCCcEEEEEeC-------------------
Confidence            555 4444433    24666662 233333321     123477889999986 5554322                   


Q ss_pred             cCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCC----CcceEEEecC-CCEEEEEeCCCCeEEEEEeeCCCCcceeee
Q 015463          216 SLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQ----FPNGLSLSKD-KSFFVFCEGSVGRLHKYWLIGEKAGNLEAF  290 (406)
Q Consensus       216 e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~----~~ngi~l~~d-~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~  290 (406)
                                   +|.+..||..+++.........    ....+++++| ++.++... ..+.|..+++...+  ....+
T Consensus       182 -------------d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~--~~~~~  245 (615)
T 1pgu_A          182 -------------DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG-SDRKISCFDGKSGE--FLKYI  245 (615)
T ss_dssp             -------------TTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE-TTCCEEEEETTTCC--EEEEC
T ss_pred             -------------CCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEe-CCCeEEEEECCCCC--EeEEe
Confidence                         4789999988776654443332    3568999999 88776554 45788888865321  11112


Q ss_pred             -e---cCCCCCCceEECCCCCEEEEEcc
Q 015463          291 -A---ILPGYPDNVRTNEKGEFWVAIHC  314 (406)
Q Consensus       291 -~---~l~g~pd~i~~d~~G~lwv~~~~  314 (406)
                       .   .-.+....++++ +|.+.++...
T Consensus       246 ~~~~~~~~~~v~~~~~~-~~~~l~~~~~  272 (615)
T 1pgu_A          246 EDDQEPVQGGIFALSWL-DSQKFATVGA  272 (615)
T ss_dssp             CBTTBCCCSCEEEEEES-SSSEEEEEET
T ss_pred             cccccccCCceEEEEEc-CCCEEEEEcC
Confidence             1   111223356677 7876665543

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=98.13  E-value=0.0015  Score=66.73  Aligned_cols=82  Identities=20%  Similarity=0.178  Sum_probs=51.3

Q ss_pred             cCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcE-EE
Q 015463           69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL-YI  147 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L-~V  147 (406)
                      ....++++.++|+.+.+++.|+.|..|+...-+..........             ......+.+.++++++ +|.+ ..
T Consensus       191 ~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~-------------~~~~h~~~V~~v~~sp-dg~~l~s  256 (611)
T 1nr0_A          191 KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSL-------------KNVAHSGSVFGLTWSP-DGTKIAS  256 (611)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTS-------------SSCSSSSCEEEEEECT-TSSEEEE
T ss_pred             CceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccc-------------cccccCCCEEEEEECC-CCCEEEE
Confidence            3457899999999888999999999998651111111100000             0001135578999999 6654 44


Q ss_pred             EeCCCcEEEEeCCCCeE
Q 015463          148 ADAYFGLMKVGPEGGLA  164 (406)
Q Consensus       148 ad~~~gl~~~d~~~~~~  164 (406)
                      +...+.|..+|..+++.
T Consensus       257 ~s~D~~v~lWd~~~~~~  273 (611)
T 1nr0_A          257 ASADKTIKIWNVATLKV  273 (611)
T ss_dssp             EETTSEEEEEETTTTEE
T ss_pred             EeCCCeEEEEeCCCCce
Confidence            55556688888877653

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=98.12  E-value=0.0048  Score=58.24  Aligned_cols=199  Identities=13%  Similarity=0.122  Sum_probs=112.6

Q ss_pred             eccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC
Q 015463           63 KFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK  141 (406)
Q Consensus        63 ~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~  141 (406)
                      .+.+.-....++++.++|+.+.+++.||.|..|+.. ........                     ..+.....+++.+ 
T Consensus        59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~---------------------~~~~~v~~~~~sp-  116 (354)
T 2pbi_B           59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVT---------------------MPCTWVMACAYAP-  116 (354)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---------------------CSSSCCCEEEECT-
T ss_pred             EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEe---------------------cCCCCEEEEEECC-
Confidence            345555566889999999989999999999999865 11111110                     0123456889999 


Q ss_pred             CCcEEEEeCC-CcEEEEeCCCCeEEEcccccC--CcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCC
Q 015463          142 TGDLYIADAY-FGLMKVGPEGGLATSLATEAE--GVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLN  218 (406)
Q Consensus       142 ~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~--~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~  218 (406)
                      +|.+.++... +.+..++..............  ......+..+.+.+++...++.+.                      
T Consensus       117 ~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~----------------------  174 (354)
T 2pbi_B          117 SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASG----------------------  174 (354)
T ss_dssp             TSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEET----------------------
T ss_pred             CCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeC----------------------
Confidence            6766555444 445566543221000000000  001124567788888876665432                      


Q ss_pred             CCCCCcccCCCCeEEEEeCCCCeEEEecccC-CCcceEEEecC--CCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCC
Q 015463          219 DPSPIKITKDTGRVLKYDPTTKQTTVLLRNL-QFPNGLSLSKD--KSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPG  295 (406)
Q Consensus       219 ~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~-~~~ngi~l~~d--~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g  295 (406)
                                +|.+..+|.++++......+. .....++++++  ++.+ ++....+.|..+++...+  ....+..-.+
T Consensus       175 ----------D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l-~sgs~Dg~v~~wd~~~~~--~~~~~~~h~~  241 (354)
T 2pbi_B          175 ----------DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF-VSGGCDKKAMVWDMRSGQ--CVQAFETHES  241 (354)
T ss_dssp             ----------TSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEE-EEEETTSCEEEEETTTCC--EEEEECCCSS
T ss_pred             ----------CCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEE-EEEeCCCeEEEEECCCCc--EEEEecCCCC
Confidence                      477999999888764433332 23356777764  5555 444456788888865321  1112211112


Q ss_pred             CCCceEECCCCCEEEEEccCCcc
Q 015463          296 YPDNVRTNEKGEFWVAIHCRRSL  318 (406)
Q Consensus       296 ~pd~i~~d~~G~lwv~~~~~~~~  318 (406)
                      ....++++++|++.++......+
T Consensus       242 ~v~~v~~~p~~~~l~s~s~D~~v  264 (354)
T 2pbi_B          242 DVNSVRYYPSGDAFASGSDDATC  264 (354)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCE
T ss_pred             CeEEEEEeCCCCEEEEEeCCCeE
Confidence            23456778888877665544443

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.11  E-value=0.0017  Score=63.33  Aligned_cols=156  Identities=8%  Similarity=0.028  Sum_probs=97.5

Q ss_pred             CcceEEEcCCCCee-EEEecCCEEEEEeCC-----ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC
Q 015463           70 GPESMAFDPLGRGP-YTGVADGRILFWDGL-----KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (406)
Q Consensus        70 gpe~i~~d~~g~~l-y~g~~~g~I~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g  143 (406)
                      ...+++++++|+.| +++..+|.|..|+..     ....+...                     .....+.++++++++.
T Consensus       104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~---------------------~~~~~v~~~~~sp~~~  162 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF---------------------CFSKRPNAISIAEDDT  162 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE---------------------ECSSCEEEEEECTTSS
T ss_pred             ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc---------------------cCCCCceEEEEcCCCC
Confidence            45789999999975 678889988888743     11222110                     0124567899998444


Q ss_pred             cEEEEeCCCcEEEEeCCCCeEEE-cccccCCcccccccceEEcCC---CCEEEEeCCCchhhhccccccccccccccCCC
Q 015463          144 DLYIADAYFGLMKVGPEGGLATS-LATEAEGVPLRFTNDLDIDDE---GNVYFTDSSTNYQRRQMQKENIPLQLCSSLND  219 (406)
Q Consensus       144 ~L~Vad~~~gl~~~d~~~~~~~~-l~~~~~~~~~~~~~~l~~d~d---G~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~  219 (406)
                      .|++++..+.++.++..++.... ......+ ....+.++++.++   |.+.++.+.                       
T Consensus       163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~~~l~s~~~-----------------------  218 (450)
T 2vdu_B          163 TVIIADKFGDVYSIDINSIPEEKFTQEPILG-HVSMLTDVHLIKDSDGHQFIITSDR-----------------------  218 (450)
T ss_dssp             EEEEEETTSEEEEEETTSCCCSSCCCCCSEE-CSSCEEEEEEEECTTSCEEEEEEET-----------------------
T ss_pred             EEEEEeCCCcEEEEecCCcccccccceeeec-ccCceEEEEEcCCCCCCcEEEEEcC-----------------------
Confidence            56677666678889876654321 0000001 1234778899988   866666432                       


Q ss_pred             CCCCcccCCCCeEEEEeCCCCeEE-Eeccc-CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463          220 PSPIKITKDTGRVLKYDPTTKQTT-VLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  281 (406)
Q Consensus       220 ~~~~~~~~~~g~l~~~d~~t~~~~-~~~~~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g  281 (406)
                               ++.|..||..+++.. .+..+ ......++++ |++.++.+. ..+.|..+++..
T Consensus       219 ---------d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~-~d~~v~vwd~~~  271 (450)
T 2vdu_B          219 ---------DEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAG-GDDKIFAWDWKT  271 (450)
T ss_dssp             ---------TSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEE-SSSEEEEEETTT
T ss_pred             ---------CCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEe-CCCeEEEEECCC
Confidence                     367888888776543 32322 2345789999 998776554 467888888763

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=98.11  E-value=0.0011  Score=62.67  Aligned_cols=186  Identities=11%  Similarity=0.072  Sum_probs=112.4

Q ss_pred             CcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC-CC-cEEE
Q 015463           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK-TG-DLYI  147 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~-~g-~L~V  147 (406)
                      ...++.+.+++..+++++.+|.|..|+...-..+.....                   + ......+.+.+. +| .|+.
T Consensus       156 ~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~-------------------h-~~~v~~~~~~~~~~g~~l~s  215 (354)
T 2pbi_B          156 YLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHG-------------------H-GADVLCLDLAPSETGNTFVS  215 (354)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC-------------------C-SSCEEEEEECCCSSCCEEEE
T ss_pred             cEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcC-------------------C-CCCeEEEEEEeCCCCCEEEE
Confidence            346788888888899999999999999762111111100                   0 123455666542 33 4566


Q ss_pred             EeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463          148 ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK  227 (406)
Q Consensus       148 ad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  227 (406)
                      +...+.|..+|..+++.......    ....++++++.++|.+.++.+.                               
T Consensus       216 gs~Dg~v~~wd~~~~~~~~~~~~----h~~~v~~v~~~p~~~~l~s~s~-------------------------------  260 (354)
T 2pbi_B          216 GGCDKKAMVWDMRSGQCVQAFET----HESDVNSVRYYPSGDAFASGSD-------------------------------  260 (354)
T ss_dssp             EETTSCEEEEETTTCCEEEEECC----CSSCEEEEEECTTSSEEEEEET-------------------------------
T ss_pred             EeCCCeEEEEECCCCcEEEEecC----CCCCeEEEEEeCCCCEEEEEeC-------------------------------
Confidence            66667799999887764322111    1235788999999988777532                               


Q ss_pred             CCCeEEEEeCCCCeEEEeccc---CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECC
Q 015463          228 DTGRVLKYDPTTKQTTVLLRN---LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNE  304 (406)
Q Consensus       228 ~~g~l~~~d~~t~~~~~~~~~---~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~  304 (406)
                       ++.+..||..+++.......   ......++++++++.++... ..+.|..+++....  ....+..-.+....+++++
T Consensus       261 -D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~-~d~~i~vwd~~~~~--~~~~l~~h~~~v~~l~~sp  336 (354)
T 2pbi_B          261 -DATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGY-NDYTINVWDVLKGS--RVSILFGHENRVSTLRVSP  336 (354)
T ss_dssp             -TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCS--EEEEECCCSSCEEEEEECT
T ss_pred             -CCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEE-CCCcEEEEECCCCc--eEEEEECCCCcEEEEEECC
Confidence             46788889877654333221   12345788999998776654 45788888864211  1111111112233567888


Q ss_pred             CCCEEEEEcc
Q 015463          305 KGEFWVAIHC  314 (406)
Q Consensus       305 ~G~lwv~~~~  314 (406)
                      +|.+.++...
T Consensus       337 dg~~l~sgs~  346 (354)
T 2pbi_B          337 DGTAFCSGSW  346 (354)
T ss_dssp             TSSCEEEEET
T ss_pred             CCCEEEEEcC
Confidence            9986666543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=98.10  E-value=0.00058  Score=63.79  Aligned_cols=103  Identities=12%  Similarity=-0.064  Sum_probs=65.4

Q ss_pred             cceEEEcCC----CCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeC-CCCcE
Q 015463           71 PESMAFDPL----GRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK-KTGDL  145 (406)
Q Consensus        71 pe~i~~d~~----g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~-~~g~L  145 (406)
                      ..++++.++    |+.++++..+|.|..|+......+....                    ........+++.+ +...|
T Consensus        72 v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--------------------~~~~~i~~~~~~~~~~~~l  131 (366)
T 3k26_A           72 FYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--------------------GHGNAINELKFHPRDPNLL  131 (366)
T ss_dssp             EEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEE--------------------SCCSCEEEEEECSSCTTEE
T ss_pred             EEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeec--------------------CCCCcEEEEEECCCCCCEE
Confidence            467788877    6678999999999999876211111110                    0124467889987 33445


Q ss_pred             EEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEe
Q 015463          146 YIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTD  194 (406)
Q Consensus       146 ~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~  194 (406)
                      +.+...+.|..+|.++++.........+ ....+.+++++++|+..++.
T Consensus       132 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~  179 (366)
T 3k26_A          132 LSVSKDHALRLWNIQTDTLVAIFGGVEG-HRDEVLSADYDLLGEKIMSC  179 (366)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECSTTS-CSSCEEEEEECTTSSEEEEE
T ss_pred             EEEeCCCeEEEEEeecCeEEEEeccccc-ccCceeEEEECCCCCEEEEe
Confidence            6666667799999987765433211011 12357789999999877665

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.10  E-value=7.3e-05  Score=71.75  Aligned_cols=216  Identities=8%  Similarity=-0.106  Sum_probs=113.8

Q ss_pred             CcceEEEcCCCCeeEEEe----------cCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEe
Q 015463           70 GPESMAFDPLGRGPYTGV----------ADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFD  139 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~----------~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d  139 (406)
                      .| ++++++||+.+|++.          .++.|..||....+..........             .-.....+|.+++++
T Consensus        67 ~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~-------------~~~~~g~~P~~ia~S  132 (368)
T 1mda_H           67 LS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA-------------PRFSVGPRVHIIGNC  132 (368)
T ss_dssp             TC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS-------------CSCCBSCCTTSEEEC
T ss_pred             CC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCc-------------cccccCCCcceEEEc
Confidence            58 899999999899986          357899999873332222110000             000123569999999


Q ss_pred             CCCCcEEEEeCC--CcEEE--EeCCCCeEEEcccccCCcccccccc----eEEcCCCCEEEEeCCC-----c-hhh---h
Q 015463          140 KKTGDLYIADAY--FGLMK--VGPEGGLATSLATEAEGVPLRFTND----LDIDDEGNVYFTDSST-----N-YQR---R  202 (406)
Q Consensus       140 ~~~g~L~Vad~~--~gl~~--~d~~~~~~~~l~~~~~~~~~~~~~~----l~~d~dG~ly~t~~~~-----~-~~~---~  202 (406)
                      +++..|||+...  ..+..  +|+.+  +..+...  +.....+.+    ++..++|.+.+-+...     + ...   .
T Consensus       133 pDGk~lyVan~~~~~~v~V~~iD~~t--v~~i~v~--~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~  208 (368)
T 1mda_H          133 ASSACLLFFLFGSSAAAGLSVPGASD--DQLTKSA--SCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTG  208 (368)
T ss_dssp             TTSSCEEEEECSSSCEEEEEETTTEE--EEEEECS--SCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCT
T ss_pred             CCCCEEEEEccCCCCeEEEEEEchhh--ceEEECC--CceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeee
Confidence            965689999864  45667  78866  3333211  100011111    2333455433333221     0 000   0


Q ss_pred             ccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecc----------cCCCcce---EEEecCCCEEEEEeC
Q 015463          203 QMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLR----------NLQFPNG---LSLSKDKSFFVFCEG  269 (406)
Q Consensus       203 ~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~----------~~~~~ng---i~l~~d~~~l~v~~t  269 (406)
                      .+.....+. .  . .+...++.... +.++.+|..++..+....          ....|.|   +++++|++.+|++..
T Consensus       209 ~i~vg~~P~-~--~-~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~  283 (368)
T 1mda_H          209 AQNCSSQAA-Q--A-NYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTV  283 (368)
T ss_dssp             TSCBCSCCE-E--E-TTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEE
T ss_pred             eeeCCCCcc-c--c-ccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEec
Confidence            000000000 0  0 01111111222 678888886543332211          1112344   889999999999754


Q ss_pred             ---C-----CCeEEEEEeeCCCCcceeeee--cCCCCCCceEECCCCC-EEEEEc
Q 015463          270 ---S-----VGRLHKYWLIGEKAGNLEAFA--ILPGYPDNVRTNEKGE-FWVAIH  313 (406)
Q Consensus       270 ---~-----~~~i~~~~~~g~~~~~~~~~~--~l~g~pd~i~~d~~G~-lwv~~~  313 (406)
                         .     ...+..++++..     ++..  ...+.|.++++++||+ +|++..
T Consensus       284 ~~~~~~~~~~~~~~ViD~~t~-----~vv~~i~vg~~p~gi~~s~Dg~~l~va~~  333 (368)
T 1mda_H          284 EHSRSCLAAAENTSSVTASVG-----QTSGPISNGHDSDAIIAAQDGASDNYANS  333 (368)
T ss_dssp             ECSSCTTSCEEEEEEEESSSC-----CEEECCEEEEEECEEEECCSSSCEEEEEE
T ss_pred             cccCcccccCCCEEEEECCCC-----eEEEEEECCCCcceEEECCCCCEEEEEcc
Confidence               2     246778886532     2222  2334699999999997 899887

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.10  E-value=0.0013  Score=62.51  Aligned_cols=192  Identities=10%  Similarity=-0.044  Sum_probs=106.5

Q ss_pred             eccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCCcee------EEEeecCCCccccCCCCCcccccccCCcCCcceEE
Q 015463           63 KFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWT------DFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGL  136 (406)
Q Consensus        63 ~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi  136 (406)
                      .+.+.-....++++++  +.+++++.+|.|..|+.....      .....                    .........+
T Consensus        11 ~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~--------------------~~h~~~v~~~   68 (397)
T 1sq9_A           11 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH--------------------FVHKSGLHHV   68 (397)
T ss_dssp             ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE--------------------ECCTTCEEEE
T ss_pred             hhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEE--------------------ecCCCcEEEE
Confidence            3344444557888877  568999999999999876111      11100                    0112335788


Q ss_pred             EEeCCC----C---c-EEEEeCCCcEEEEeCCCCe------EEEcccccCCcccccccceEEc----CCCCE-EEEeCCC
Q 015463          137 RFDKKT----G---D-LYIADAYFGLMKVGPEGGL------ATSLATEAEGVPLRFTNDLDID----DEGNV-YFTDSST  197 (406)
Q Consensus       137 ~~d~~~----g---~-L~Vad~~~gl~~~d~~~~~------~~~l~~~~~~~~~~~~~~l~~d----~dG~l-y~t~~~~  197 (406)
                      ++.+ +    +   + |+.+...+.|..++.++++      ...+...........+.++++.    ++|.. +++.+. 
T Consensus        69 ~~~~-~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-  146 (397)
T 1sq9_A           69 DVLQ-AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV-  146 (397)
T ss_dssp             EEEE-EEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEET-
T ss_pred             EEec-ccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeC-
Confidence            8988 5    6   4 4555555668888876655      3332211000002457788998    88876 655422 


Q ss_pred             chhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCC------Ce-EE-----Eec-------ccCCCcceEEEe
Q 015463          198 NYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTT------KQ-TT-----VLL-------RNLQFPNGLSLS  258 (406)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t------~~-~~-----~~~-------~~~~~~ngi~l~  258 (406)
                                                     +|.|..||..+      ++ ..     .+.       ........++++
T Consensus       147 -------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  195 (397)
T 1sq9_A          147 -------------------------------KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS  195 (397)
T ss_dssp             -------------------------------TSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC
T ss_pred             -------------------------------CCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEEC
Confidence                                           36677777665      22 11     221       123345789999


Q ss_pred             cCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeec---C---CCCCCceEECCCCCEEEEEc
Q 015463          259 KDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI---L---PGYPDNVRTNEKGEFWVAIH  313 (406)
Q Consensus       259 ~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~---l---~g~pd~i~~d~~G~lwv~~~  313 (406)
                      +++ .+ ++....+.|..|++...+  ....+..   -   .+....++++++|++.++..
T Consensus       196 ~~~-~l-~~~~~dg~i~i~d~~~~~--~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~  252 (397)
T 1sq9_A          196 ERG-LI-ATGFNNGTVQISELSTLR--PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH  252 (397)
T ss_dssp             TTS-EE-EEECTTSEEEEEETTTTE--EEEEEECCC---CCCCCEEEEEECSSTTEEEEEE
T ss_pred             CCc-eE-EEEeCCCcEEEEECCCCc--eeEEEeccccccccCCccceEEECCCCCEEEEEe
Confidence            999 44 555667889998875321  1111211   1   22334577888888655543

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=98.09  E-value=0.0002  Score=69.13  Aligned_cols=146  Identities=10%  Similarity=-0.004  Sum_probs=84.7

Q ss_pred             EcCCCCeeEEEecCCEEEEEeCC----ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeC-CCCcEEEEeC
Q 015463           76 FDPLGRGPYTGVADGRILFWDGL----KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK-KTGDLYIADA  150 (406)
Q Consensus        76 ~d~~g~~ly~g~~~g~I~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~-~~g~L~Vad~  150 (406)
                      .|.++. ||+|+..| +++++.+    .|+.+....                     .......|++|+ +.++||++..
T Consensus        19 ~d~~g~-l~vgt~~G-l~~~~~~~~g~~W~~~~~~~---------------------~~~~v~~i~~dp~~~~~l~~g~~   75 (394)
T 3b7f_A           19 ESGPVM-LLVATIKG-AWFLASDPARRTWELRGPVF---------------------LGHTIHHIVQDPREPERMLMAAR   75 (394)
T ss_dssp             CCSCCE-EEEEETTE-EEEEEECTTSCSEEEEEEES---------------------TTSEEEEEEECSSSTTCEEEEEE
T ss_pred             CCCCCE-EEEEecCc-eEEEECCCCCCCceECCccC---------------------CCCceEEEEECCCCCCeEEEEec
Confidence            445666 99999876 7777532    455442110                     123467889986 3578999987


Q ss_pred             CC----cEEEEeCCCCeEEEccccc--CCc-------ccccccceEEcC---CCCEEEEeCCCchhhhcccccccccccc
Q 015463          151 YF----GLMKVGPEGGLATSLATEA--EGV-------PLRFTNDLDIDD---EGNVYFTDSSTNYQRRQMQKENIPLQLC  214 (406)
Q Consensus       151 ~~----gl~~~d~~~~~~~~l~~~~--~~~-------~~~~~~~l~~d~---dG~ly~t~~~~~~~~~~~~~~~~~~~~~  214 (406)
                      ..    +|++.+..+...+.+....  ...       ....+..|++++   .+.+|++...                  
T Consensus        76 ~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~------------------  137 (394)
T 3b7f_A           76 TGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSP------------------  137 (394)
T ss_dssp             C--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEET------------------
T ss_pred             CCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecC------------------
Confidence            65    7998876555555543221  111       112345678885   6789997632                  


Q ss_pred             ccCCCCCCCcccCCCCeEEEEeCCCCeEEEeccc-----------------CC--CcceEEEec-CCCEEEEEeCCCCeE
Q 015463          215 SSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRN-----------------LQ--FPNGLSLSK-DKSFFVFCEGSVGRL  274 (406)
Q Consensus       215 ~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-----------------~~--~~ngi~l~~-d~~~l~v~~t~~~~i  274 (406)
                                     ++|++.+..+...+.+...                 ..  ....|++++ +.+.+|+... .+.|
T Consensus       138 ---------------ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~-~ggl  201 (394)
T 3b7f_A          138 ---------------QGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS-SGGV  201 (394)
T ss_dssp             ---------------TEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE-TBEE
T ss_pred             ---------------CcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC-CCCE
Confidence                           5788887765555554311                 00  113566766 3456777643 3567


Q ss_pred             EEEE
Q 015463          275 HKYW  278 (406)
Q Consensus       275 ~~~~  278 (406)
                      ++..
T Consensus       202 ~~s~  205 (394)
T 3b7f_A          202 FEST  205 (394)
T ss_dssp             EEES
T ss_pred             EEEC
Confidence            7664

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=98.09  E-value=0.0016  Score=62.41  Aligned_cols=198  Identities=12%  Similarity=0.139  Sum_probs=119.7

Q ss_pred             cccCcceEEEcCCCCeeEE-Eec---------------CCEEEEEeCCce--e---EEEeecCCCccccCCCCCcccccc
Q 015463           67 QIQGPESMAFDPLGRGPYT-GVA---------------DGRILFWDGLKW--T---DFAFTSNNRSELCNPKPIATSYLK  125 (406)
Q Consensus        67 ~~~gpe~i~~d~~g~~ly~-g~~---------------~g~I~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~  125 (406)
                      .+...-++.+|+.|+ ||+ ++.               .-+|+.+|...-  +   .+....                 .
T Consensus        85 ~lvsV~~v~iD~~~r-LWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~-----------------~  146 (381)
T 3q6k_A           85 ELTSIYQPVIDDCRR-LWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPT-----------------R  146 (381)
T ss_dssp             SSSCEEEEEECTTCE-EEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCG-----------------G
T ss_pred             ceEEeeEEEEcCCCc-EEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCH-----------------H
Confidence            577888999999888 554 432               125677765511  1   221111                 0


Q ss_pred             cCCcCCcceEEEEe-CC------CCcEEEEeCC-CcEEEEeCCCCeEEEcccc-----------cCCccc---ccccceE
Q 015463          126 NEHICGRPLGLRFD-KK------TGDLYIADAY-FGLMKVGPEGGLATSLATE-----------AEGVPL---RFTNDLD  183 (406)
Q Consensus       126 ~~~~~~~p~gi~~d-~~------~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~-----------~~~~~~---~~~~~l~  183 (406)
                      ..........|++| .+      ++..||+|.. .||..+|..+++...+...           ..|.++   ..+.+|+
T Consensus       147 ~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIa  226 (381)
T 3q6k_A          147 LVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGIT  226 (381)
T ss_dssp             GCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEE
T ss_pred             hcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEE
Confidence            00112345688888 31      4568999986 7899999998876655421           112222   2567788


Q ss_pred             EcCC----C-CEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeC------C-CCeEEEecccCCC
Q 015463          184 IDDE----G-NVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDP------T-TKQTTVLLRNLQF  251 (406)
Q Consensus       184 ~d~d----G-~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~------~-t~~~~~~~~~~~~  251 (406)
                      .+++    + .||+...++                                -++|++..      . ...++.+.+....
T Consensus       227 Lsp~~~~~~~~LYf~plss--------------------------------~~ly~V~T~~L~~~~~~~~v~~~G~kg~~  274 (381)
T 3q6k_A          227 LGDRDSEGNRPAYYLAGSA--------------------------------IKVYSVNTKELKQKGGKLNPELLGNRGKY  274 (381)
T ss_dssp             ECCCCTTSCCEEEEEESSC--------------------------------SEEEEEEHHHHSSTTCCCCCEEEEECCTT
T ss_pred             ecCCcCCCCeEEEEEECCC--------------------------------CcEEEEEHHHhhCcchhhceEEeeecCCC
Confidence            8775    3 688886542                                12444321      0 1334444333222


Q ss_pred             cce--EEEecCCCEEEEEeCCCCeEEEEEeeC-C-CCcceeeeec--CCCCCCceEECCCCCEEEEEcc
Q 015463          252 PNG--LSLSKDKSFFVFCEGSVGRLHKYWLIG-E-KAGNLEAFAI--LPGYPDNVRTNEKGEFWVAIHC  314 (406)
Q Consensus       252 ~ng--i~l~~d~~~l~v~~t~~~~i~~~~~~g-~-~~~~~~~~~~--l~g~pd~i~~d~~G~lwv~~~~  314 (406)
                      ..|  .++++....+|+++...+.|.+++..+ + +.++.+++..  .--+|+++.+|.+|.||+..+.
T Consensus       275 s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn~  343 (381)
T 3q6k_A          275 NDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSNG  343 (381)
T ss_dssp             CCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEECS
T ss_pred             CCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEECc
Confidence            344  456533457999999999999999775 3 1244555553  2246999999999999999865

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=98.07  E-value=0.0061  Score=57.01  Aligned_cols=195  Identities=8%  Similarity=-0.021  Sum_probs=110.3

Q ss_pred             cCcccCcceEEE-----cC-CCCeeEEEecCCEEEEEeCC-c-----e-eEEEeecCCCccccCCCCCcccccccCCcCC
Q 015463           65 LNQIQGPESMAF-----DP-LGRGPYTGVADGRILFWDGL-K-----W-TDFAFTSNNRSELCNPKPIATSYLKNEHICG  131 (406)
Q Consensus        65 ~~~~~gpe~i~~-----d~-~g~~ly~g~~~g~I~~~~~~-~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (406)
                      .+.-....++++     .+ +++.+.+++.|+.|..|+.. .     . .....                    ......
T Consensus        18 ~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~--------------------l~~h~~   77 (343)
T 2xzm_R           18 EGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKA--------------------LTGHNH   77 (343)
T ss_dssp             ECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEE--------------------ECCCSS
T ss_pred             ccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccch--------------------hccCCC
Confidence            344444567777     55 78889999999999998754 1     0 01100                    011123


Q ss_pred             cceEEEEeCCCCcEE-EEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccccc
Q 015463          132 RPLGLRFDKKTGDLY-IADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIP  210 (406)
Q Consensus       132 ~p~gi~~d~~~g~L~-Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~  210 (406)
                      ....+++.+ ++.+. .+...+.|..+|.++++........    ...+.++++.++|+..++.+.              
T Consensus        78 ~V~~~~~~~-~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h----~~~v~~v~~sp~~~~l~s~~~--------------  138 (343)
T 2xzm_R           78 FVSDLALSQ-ENCFAISSSWDKTLRLWDLRTGTTYKRFVGH----QSEVYSVAFSPDNRQILSAGA--------------  138 (343)
T ss_dssp             CEEEEEECS-STTEEEEEETTSEEEEEETTSSCEEEEEECC----CSCEEEEEECSSTTEEEEEET--------------
T ss_pred             ceEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCC----CCcEEEEEECCCCCEEEEEcC--------------
Confidence            456889998 66654 4554566888998877543211111    124778999999987776432              


Q ss_pred             ccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecc---cCCCcceEEEecCCC---------EEEEEeCCCCeEEEEE
Q 015463          211 LQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLR---NLQFPNGLSLSKDKS---------FFVFCEGSVGRLHKYW  278 (406)
Q Consensus       211 ~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~---~~~~~ngi~l~~d~~---------~l~v~~t~~~~i~~~~  278 (406)
                                        ++.+..+|...........   .......+++++++.         .++++....+.|..++
T Consensus       139 ------------------d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd  200 (343)
T 2xzm_R          139 ------------------EREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN  200 (343)
T ss_dssp             ------------------TSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE
T ss_pred             ------------------CCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc
Confidence                              3668888876443332221   112235677888762         2344444567787777


Q ss_pred             eeCCCCcceeeeecCCCCCCceEECCCCCEEEEEccCCcch
Q 015463          279 LIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLY  319 (406)
Q Consensus       279 ~~g~~~~~~~~~~~l~g~pd~i~~d~~G~lwv~~~~~~~~~  319 (406)
                      ..+   .....+..-.+....++++++|++.++......+.
T Consensus       201 ~~~---~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~  238 (343)
T 2xzm_R          201 TNF---QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLL  238 (343)
T ss_dssp             TTT---EEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred             CCC---ceeEEEcCccccceEEEECCCCCEEEEEcCCCeEE
Confidence            321   11111211122234567889998776655444443

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.05  E-value=0.0042  Score=68.59  Aligned_cols=192  Identities=11%  Similarity=0.013  Sum_probs=116.5

Q ss_pred             cCcccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc
Q 015463           65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (406)
Q Consensus        65 ~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~  144 (406)
                      .+......+++++++|+.+.+++.+|.|..|+......+....                    ...+....+++++ +|+
T Consensus       612 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~--------------------~h~~~v~~~~~s~-~~~  670 (1249)
T 3sfz_A          612 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIK--------------------AHEDEVLCCAFSS-DDS  670 (1249)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC--------------------CCSSCEEEEEECT-TSS
T ss_pred             ecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEec--------------------cCCCCEEEEEEec-CCC
Confidence            3444556788999999988899999999999976222221111                    1134467899998 555


Q ss_pred             -EEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCC--CCEEEEeCCCchhhhccccccccccccccCCCCC
Q 015463          145 -LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDE--GNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPS  221 (406)
Q Consensus       145 -L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~d--G~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~  221 (406)
                       |..+...+.|..+|..+++........    ...+..+++.++  +.+.++.+                          
T Consensus       671 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~sg~--------------------------  720 (1249)
T 3sfz_A          671 YIATCSADKKVKIWDSATGKLVHTYDEH----SEQVNCCHFTNKSNHLLLATGS--------------------------  720 (1249)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECC----SSCEEEEEECSSSSCCEEEEEE--------------------------
T ss_pred             EEEEEeCCCeEEEEECCCCceEEEEcCC----CCcEEEEEEecCCCceEEEEEe--------------------------
Confidence             555555567999999887643322211    124667788774  34544432                          


Q ss_pred             CCcccCCCCeEEEEeCCCCeEEEeccc-CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceee----ee-----
Q 015463          222 PIKITKDTGRVLKYDPTTKQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEA----FA-----  291 (406)
Q Consensus       222 ~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~----~~-----  291 (406)
                            .+|.+..||..+++......+ ....+.+++++|++.++.+. ..+.|..+++...+....-.    +.     
T Consensus       721 ------~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~  793 (1249)
T 3sfz_A          721 ------NDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCS-ADGTLRLWDVRSANERKSINVKRFFLSSEDP  793 (1249)
T ss_dssp             ------TTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEE-SSSEEEEEEGGGTEEEEEEECCCCC------
T ss_pred             ------CCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEE-CCCeEEEEeCCCCcccceecccccccccCCc
Confidence                  247799999988875544333 23456889999998775554 45788888876321110000    00     


Q ss_pred             --cCCCCCCceEECCCCCEEEEEcc
Q 015463          292 --ILPGYPDNVRTNEKGEFWVAIHC  314 (406)
Q Consensus       292 --~l~g~pd~i~~d~~G~lwv~~~~  314 (406)
                        ........++++++|...++...
T Consensus       794 ~~~~~~~v~~~~~s~dg~~l~~~~~  818 (1249)
T 3sfz_A          794 PEDVEVIVKCCSWSADGDKIIVAAK  818 (1249)
T ss_dssp             --CCCCCBCCCCBCTTSSEEEEEET
T ss_pred             cccccceEEEEEECCCCCEEEEEcC
Confidence              00112345667888886666543

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=98.05  E-value=0.0012  Score=61.33  Aligned_cols=190  Identities=11%  Similarity=0.013  Sum_probs=108.0

Q ss_pred             CcceEEEcCC---CCeeEEEecCCEEEEEeCCcee-EEEeecCCCccccCCCCCcccccccCCcCCcceEEE------Ee
Q 015463           70 GPESMAFDPL---GRGPYTGVADGRILFWDGLKWT-DFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLR------FD  139 (406)
Q Consensus        70 gpe~i~~d~~---g~~ly~g~~~g~I~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~------~d  139 (406)
                      ...++++.++   |+.++++..+|.|..|+..... ......                    ........+.      ++
T Consensus        67 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------------------~~~~~v~~~~~~~~~~~s  126 (357)
T 3i2n_A           67 PIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVK--------------------GHKEIINAIDGIGGLGIG  126 (357)
T ss_dssp             CEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEEC--------------------CCSSCEEEEEEESGGGCC
T ss_pred             cEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEE--------------------ecccceEEEeeccccccC
Confidence            4477888887   6878999999999999876111 111100                    0112344553      34


Q ss_pred             CCCCcEEEEeCCCcEEEEeCCCCe--EEEcccccCCcccccccceE----EcCCCCEEEEeCCCchhhhccccccccccc
Q 015463          140 KKTGDLYIADAYFGLMKVGPEGGL--ATSLATEAEGVPLRFTNDLD----IDDEGNVYFTDSSTNYQRRQMQKENIPLQL  213 (406)
Q Consensus       140 ~~~g~L~Vad~~~gl~~~d~~~~~--~~~l~~~~~~~~~~~~~~l~----~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~  213 (406)
                      +++..|+.+...+.|..+|..+++  ...+.. ..+.....+.+++    +.++|++.++.+.                 
T Consensus       127 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~-----------------  188 (357)
T 3i2n_A          127 EGAPEIVTGSRDGTVKVWDPRQKDDPVANMEP-VQGENKRDCWTVAFGNAYNQEERVVCAGYD-----------------  188 (357)
T ss_dssp             -CCCEEEEEETTSCEEEECTTSCSSCSEEECC-CTTSCCCCEEEEEEECCCC-CCCEEEEEET-----------------
T ss_pred             CCccEEEEEeCCCeEEEEeCCCCCCcceeccc-cCCCCCCceEEEEEEeccCCCCCEEEEEcc-----------------
Confidence            523345556555678899987664  222211 1121122345555    5678877666432                 


Q ss_pred             cccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEec---CCCEEEEEeCCCCeEEEEEeeCCCCcceeee
Q 015463          214 CSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSK---DKSFFVFCEGSVGRLHKYWLIGEKAGNLEAF  290 (406)
Q Consensus       214 ~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~---d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~  290 (406)
                                     +|.|..||..+++.............++++|   +++.++.+. ..+.|..|++...+.-..-.+
T Consensus       189 ---------------d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~  252 (357)
T 3i2n_A          189 ---------------NGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATS-LEGKFHVFDMRTQHPTKGFAS  252 (357)
T ss_dssp             ---------------TSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEE-STTEEEEEEEEEEETTTEEEE
T ss_pred             ---------------CCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEEC-CCCeEEEEeCcCCCcccceee
Confidence                           4789999999887655443344567899999   888776664 467888888764221111111


Q ss_pred             e---cCCCCCCceEECCCCC-EEEEEc
Q 015463          291 A---ILPGYPDNVRTNEKGE-FWVAIH  313 (406)
Q Consensus       291 ~---~l~g~pd~i~~d~~G~-lwv~~~  313 (406)
                      .   .-.+....+++.++|. +.++..
T Consensus       253 ~~~~~~~~~v~~~~~~~~~~~~l~~~~  279 (357)
T 3i2n_A          253 VSEKAHKSTVWQVRHLPQNRELFLTAG  279 (357)
T ss_dssp             EEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred             eccCCCcCCEEEEEECCCCCcEEEEEe
Confidence            0   1122234466778887 444433

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=98.04  E-value=0.0032  Score=58.97  Aligned_cols=189  Identities=12%  Similarity=0.021  Sum_probs=109.0

Q ss_pred             CcccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-
Q 015463           66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-  144 (406)
Q Consensus        66 ~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-  144 (406)
                      +.-....++++.+++..+.+++.++.|..|+...-+.+....                    ...+....+++.+ +++ 
T Consensus        74 ~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~--------------------~h~~~v~~v~~sp-~~~~  132 (343)
T 2xzm_R           74 GHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFV--------------------GHQSEVYSVAFSP-DNRQ  132 (343)
T ss_dssp             CCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEE--------------------CCCSCEEEEEECS-STTE
T ss_pred             cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEc--------------------CCCCcEEEEEECC-CCCE
Confidence            333445788999999988899999999999976211111110                    0123467899998 554 


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCC----------CEEEEeCCCchhhhcccccccccccc
Q 015463          145 LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG----------NVYFTDSSTNYQRRQMQKENIPLQLC  214 (406)
Q Consensus       145 L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG----------~ly~t~~~~~~~~~~~~~~~~~~~~~  214 (406)
                      |..+...+.|..+|..+.........  ......+..+++.+++          .+.++.                    
T Consensus       133 l~s~~~d~~i~~wd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~--------------------  190 (343)
T 2xzm_R          133 ILSAGAEREIKLWNILGECKFSSAEK--ENHSDWVSCVRYSPIMKSANKVQPFAPYFASV--------------------  190 (343)
T ss_dssp             EEEEETTSCEEEEESSSCEEEECCTT--TSCSSCEEEEEECCCCCSCSCCCSSCCEEEEE--------------------
T ss_pred             EEEEcCCCEEEEEeccCCceeeeecc--cCCCceeeeeeeccccccccccCCCCCEEEEE--------------------
Confidence            55566566788898875443322211  0112245667776665          333332                    


Q ss_pred             ccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCC
Q 015463          215 SSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILP  294 (406)
Q Consensus       215 ~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~  294 (406)
                                  ..+|.|..||........+.......+.++++||++.+... ...+.|..+++...... ...+. ..
T Consensus       191 ------------~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sg-s~dg~v~iwd~~~~~~~-~~~~~-~~  255 (343)
T 2xzm_R          191 ------------GWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATG-GKDKKLLIWDILNLTYP-QREFD-AG  255 (343)
T ss_dssp             ------------ETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEE-ETTCEEEEEESSCCSSC-SEEEE-CS
T ss_pred             ------------cCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEE-cCCCeEEEEECCCCccc-ceeec-CC
Confidence                        22478888885533222332223345789999999876554 44678888887321111 11111 11


Q ss_pred             CCCCceEECCCCCEEEEE
Q 015463          295 GYPDNVRTNEKGEFWVAI  312 (406)
Q Consensus       295 g~pd~i~~d~~G~lwv~~  312 (406)
                      .....++++++|.+.++.
T Consensus       256 ~~v~~v~~sp~~~~la~~  273 (343)
T 2xzm_R          256 STINQIAFNPKLQWVAVG  273 (343)
T ss_dssp             SCEEEEEECSSSCEEEEE
T ss_pred             CcEEEEEECCCCCEEEEE
Confidence            223457788888755443

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=98.03  E-value=0.0014  Score=60.20  Aligned_cols=80  Identities=10%  Similarity=-0.071  Sum_probs=51.5

Q ss_pred             eccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC-c---eeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEE
Q 015463           63 KFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL-K---WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRF  138 (406)
Q Consensus        63 ~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~  138 (406)
                      ++.+.-....+++++++|+.+.++..+|.|..|+.. .   .+.....                    .........+++
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--------------------~~~~~~v~~~~~   65 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSW--------------------RAHDSSIVAIDW   65 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEE--------------------ECCSSCEEEEEE
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceeccee--------------------ccCCCcEEEEEE
Confidence            334444566889999999989999999999999855 1   1111111                    111244678888


Q ss_pred             eCC--CCcEEEEeCCCcEEEEeCCCC
Q 015463          139 DKK--TGDLYIADAYFGLMKVGPEGG  162 (406)
Q Consensus       139 d~~--~g~L~Vad~~~gl~~~d~~~~  162 (406)
                      .+.  +..|..+...+.|..+|.+++
T Consensus        66 ~~~~d~~~l~s~~~dg~v~vwd~~~~   91 (351)
T 3f3f_A           66 ASPEYGRIIASASYDKTVKLWEEDPD   91 (351)
T ss_dssp             CCGGGCSEEEEEETTSCEEEEEECTT
T ss_pred             cCCCCCCEEEEEcCCCeEEEEecCCC
Confidence            862  334555555566888887765

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.02  E-value=0.0075  Score=58.66  Aligned_cols=183  Identities=14%  Similarity=0.052  Sum_probs=101.7

Q ss_pred             eEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCCC
Q 015463           73 SMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYF  152 (406)
Q Consensus        73 ~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~~  152 (406)
                      ++.+  +++.+++++.+|.|..|+....+......                    ...+....+++.+ ++.|..+...+
T Consensus       127 ~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~--------------------~h~~~V~~l~~~~-~~~l~s~s~dg  183 (464)
T 3v7d_B          127 CLQF--EDNYVITGADDKMIRVYDSINKKFLLQLS--------------------GHDGGVWALKYAH-GGILVSGSTDR  183 (464)
T ss_dssp             EEEE--ETTEEEEEETTSCEEEEETTTTEEEEEEC--------------------CCSSCEEEEEECS-TTEEEEEETTS
T ss_pred             EEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEe--------------------CCCcCEEEEEEcC-CCEEEEEeCCC
Confidence            4444  45679999999999999976222221111                    1124467888987 67777777777


Q ss_pred             cEEEEeCCCCeEEEcccccCCcccccccceEEc--CCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCC
Q 015463          153 GLMKVGPEGGLATSLATEAEGVPLRFTNDLDID--DEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTG  230 (406)
Q Consensus       153 gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d--~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g  230 (406)
                      .|..+|.++++........    ...+..+++.  +++.+.++.+.                                +|
T Consensus       184 ~i~vwd~~~~~~~~~~~~h----~~~v~~l~~~~~~~~~~l~s~s~--------------------------------d~  227 (464)
T 3v7d_B          184 TVRVWDIKKGCCTHVFEGH----NSTVRCLDIVEYKNIKYIVTGSR--------------------------------DN  227 (464)
T ss_dssp             CEEEEETTTTEEEEEECCC----SSCEEEEEEEESSSCEEEEEEET--------------------------------TS
T ss_pred             CEEEEECCCCcEEEEECCC----CCccEEEEEecCCCCCEEEEEcC--------------------------------CC
Confidence            8999999887643322111    1235556655  46655555432                                35


Q ss_pred             eEEEEeCCCCeEEE-----------------------ecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcce
Q 015463          231 RVLKYDPTTKQTTV-----------------------LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNL  287 (406)
Q Consensus       231 ~l~~~d~~t~~~~~-----------------------~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~  287 (406)
                      .+..+|..+++...                       ...+ ....-.+++++++.++... ..+.|..+++...+  ..
T Consensus       228 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~-~d~~i~vwd~~~~~--~~  303 (464)
T 3v7d_B          228 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG-HMASVRTVSGHGNIVVSGS-YDNTLIVWDVAQMK--CL  303 (464)
T ss_dssp             CEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC-CSSCEEEEEEETTEEEEEE-TTSCEEEEETTTTE--EE
T ss_pred             cEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC-ccceEEEEcCCCCEEEEEe-CCCeEEEEECCCCc--EE
Confidence            56666666543211                       1111 1122345677888776654 45788888865211  11


Q ss_pred             eeeecCCCCCCceEECCCCCEEEEEccCCcc
Q 015463          288 EAFAILPGYPDNVRTNEKGEFWVAIHCRRSL  318 (406)
Q Consensus       288 ~~~~~l~g~pd~i~~d~~G~lwv~~~~~~~~  318 (406)
                      ..+..-.+....++++++|+..++......+
T Consensus       304 ~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i  334 (464)
T 3v7d_B          304 YILSGHTDRIYSTIYDHERKRCISASMDTTI  334 (464)
T ss_dssp             EEECCCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred             EEecCCCCCEEEEEEcCCCCEEEEEeCCCcE
Confidence            1111111223346678888866665544433

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=98.02  E-value=0.00012  Score=69.39  Aligned_cols=190  Identities=6%  Similarity=-0.024  Sum_probs=106.8

Q ss_pred             cCcceEEEcCCCCeeEEEecCCEEEEEeCC--c-eeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcE
Q 015463           69 QGPESMAFDPLGRGPYTGVADGRILFWDGL--K-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL  145 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L  145 (406)
                      ....++++.++|+.+.+++.+|.|..|+..  . +.....                    ..........+++.+++..|
T Consensus        56 ~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~--------------------~~~~~~~v~~~~~~~~~~~l  115 (377)
T 3dwl_C           56 KIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLV--------------------LLRLNRAATFVRWSPNEDKF  115 (377)
T ss_dssp             SCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEE--------------------CCCCSSCEEEEECCTTSSCC
T ss_pred             ceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeE--------------------ecccCCceEEEEECCCCCEE
Confidence            345788999999988999999999999865  2 111111                    11113446788998833456


Q ss_pred             EEEeCCCcEEEEeCCCCe----EEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCC
Q 015463          146 YIADAYFGLMKVGPEGGL----ATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPS  221 (406)
Q Consensus       146 ~Vad~~~gl~~~d~~~~~----~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~  221 (406)
                      +.+...+.|..+|.++++    ...+.    +.....+.++++.++|++.++.+.                         
T Consensus       116 ~~~~~d~~i~iwd~~~~~~~~~~~~~~----~~h~~~v~~~~~~~~~~~l~~~~~-------------------------  166 (377)
T 3dwl_C          116 AVGSGARVISVCYFEQENDWWVSKHLK----RPLRSTILSLDWHPNNVLLAAGCA-------------------------  166 (377)
T ss_dssp             EEEESSSCEEECCC-----CCCCEEEC----SSCCSCEEEEEECTTSSEEEEEES-------------------------
T ss_pred             EEEecCCeEEEEEECCcccceeeeEee----cccCCCeEEEEEcCCCCEEEEEeC-------------------------
Confidence            666666678888887664    22222    111235778999999987766432                         


Q ss_pred             CCcccCCCCeEEEEeCCCC------------------eEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCC
Q 015463          222 PIKITKDTGRVLKYDPTTK------------------QTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEK  283 (406)
Q Consensus       222 ~~~~~~~~g~l~~~d~~t~------------------~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~  283 (406)
                             +|.+..||..++                  +.............++++||++.++.+. ..+.|..+++...+
T Consensus       167 -------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~  238 (377)
T 3dwl_C          167 -------DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAG-HDSSVTIAYPSAPE  238 (377)
T ss_dssp             -------SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEE-TTTEEC-CEECSTT
T ss_pred             -------CCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEe-CCCcEEEEECCCCC
Confidence                   355777775422                  1111111122346789999998776654 45788888876432


Q ss_pred             Ccc--eeeeecCCCCCCceEECCCCCEEEEEccC
Q 015463          284 AGN--LEAFAILPGYPDNVRTNEKGEFWVAIHCR  315 (406)
Q Consensus       284 ~~~--~~~~~~l~g~pd~i~~d~~G~lwv~~~~~  315 (406)
                      ...  ...+..-.+....++++++|.+.++....
T Consensus       239 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~  272 (377)
T 3dwl_C          239 QPPRALITVKLSQLPLRSLLWANESAIVAAGYNY  272 (377)
T ss_dssp             SCEEECCCEECSSSCEEEEEEEETTEEEEEESSS
T ss_pred             CcceeeEeecCCCCceEEEEEcCCCCEEEEEcCC
Confidence            210  11111111223456777888876665443

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=97.99  E-value=0.0049  Score=58.98  Aligned_cols=205  Identities=14%  Similarity=-0.019  Sum_probs=113.4

Q ss_pred             CcceEEEcCCCCeeEEEecCCEEEEEeCC--ce-eEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-E
Q 015463           70 GPESMAFDPLGRGPYTGVADGRILFWDGL--KW-TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-L  145 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-L  145 (406)
                      ...++++.++|+.+.++. ++.+..|+..  .. ..+.............  ..   ............+++.+ +|+ |
T Consensus        66 ~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~--~~---~~~~~~~~~v~~v~~s~-dg~~l  138 (393)
T 1erj_A           66 VVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENL--NT---SSSPSSDLYIRSVCFSP-DGKFL  138 (393)
T ss_dssp             CCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC----------------------CCCCBEEEEEECT-TSSEE
T ss_pred             EEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccc--cc---cccCCCceeEEEEEECC-CCCEE
Confidence            446899999999666665 5678778755  21 1111100000000000  00   00000011246789998 565 4


Q ss_pred             EEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcc
Q 015463          146 YIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKI  225 (406)
Q Consensus       146 ~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  225 (406)
                      ..+...+.|..+|.++++........    ...+.++++.++|...++.+.                             
T Consensus       139 ~s~~~d~~i~iwd~~~~~~~~~~~~h----~~~v~~~~~~p~~~~l~s~s~-----------------------------  185 (393)
T 1erj_A          139 ATGAEDRLIRIWDIENRKIVMILQGH----EQDIYSLDYFPSGDKLVSGSG-----------------------------  185 (393)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCC----SSCEEEEEECTTSSEEEEEET-----------------------------
T ss_pred             EEEcCCCeEEEEECCCCcEEEEEccC----CCCEEEEEEcCCCCEEEEecC-----------------------------
Confidence            55555567889999887654322211    124678999999987776532                             


Q ss_pred             cCCCCeEEEEeCCCCeEEEecccCCCcceEEEec-CCCEEEEEeCCCCeEEEEEeeCCCCcceeeee----cCCCC---C
Q 015463          226 TKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSK-DKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA----ILPGY---P  297 (406)
Q Consensus       226 ~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~-d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~----~l~g~---p  297 (406)
                         ++.+..||..+++.............+++++ |++.+... ...+.|..+++.....  ...+.    ...+.   .
T Consensus       186 ---d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-s~d~~v~iwd~~~~~~--~~~~~~~~~~~~~h~~~v  259 (393)
T 1erj_A          186 ---DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAG-SLDRAVRVWDSETGFL--VERLDSENESGTGHKDSV  259 (393)
T ss_dssp             ---TSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEE-ETTSCEEEEETTTCCE--EEEEC------CCCSSCE
T ss_pred             ---CCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEE-cCCCcEEEEECCCCcE--EEeecccccCCCCCCCCE
Confidence               4779999998887654443334456788888 77766544 4457788887653211  11111    01122   2


Q ss_pred             CceEECCCCCEEEEEccCCcchh
Q 015463          298 DNVRTNEKGEFWVAIHCRRSLYS  320 (406)
Q Consensus       298 d~i~~d~~G~lwv~~~~~~~~~~  320 (406)
                      ..++++++|.+.++....+.+..
T Consensus       260 ~~v~~~~~g~~l~s~s~d~~v~~  282 (393)
T 1erj_A          260 YSVVFTRDGQSVVSGSLDRSVKL  282 (393)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCEEEE
Confidence            34678889987776655444433

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=97.99  E-value=0.00061  Score=62.18  Aligned_cols=150  Identities=9%  Similarity=-0.043  Sum_probs=100.5

Q ss_pred             CcceEEEcC-CCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEE
Q 015463           70 GPESMAFDP-LGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (406)
Q Consensus        70 gpe~i~~d~-~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~V  147 (406)
                      ...++.+.+ +++.+++++.+|.|..|+.. ....+..                      ........+++.+ ++.+++
T Consensus       144 ~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~----------------------~~~~~i~~~~~~~-~~~~~~  200 (313)
T 3odt_A          144 SVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSG----------------------IHNDVVRHLAVVD-DGHFIS  200 (313)
T ss_dssp             CEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECS----------------------SCSSCEEEEEEEE-TTEEEE
T ss_pred             ceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEec----------------------cCcccEEEEEEcC-CCeEEE
Confidence            345666665 78888999999999999855 2222210                      0123466788988 778888


Q ss_pred             EeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463          148 ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK  227 (406)
Q Consensus       148 ad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  227 (406)
                      +...+.|..+|..+++........    ...+..+++.++|.++.+..                                
T Consensus       201 ~~~dg~i~i~d~~~~~~~~~~~~~----~~~i~~~~~~~~~~l~~~~~--------------------------------  244 (313)
T 3odt_A          201 CSNDGLIKLVDMHTGDVLRTYEGH----ESFVYCIKLLPNGDIVSCGE--------------------------------  244 (313)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECC----SSCEEEEEECTTSCEEEEET--------------------------------
T ss_pred             ccCCCeEEEEECCchhhhhhhhcC----CceEEEEEEecCCCEEEEec--------------------------------
Confidence            877778999998876543222111    23477899999997665543                                


Q ss_pred             CCCeEEEEeCCCCeEEEecccC-CCcceEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463          228 DTGRVLKYDPTTKQTTVLLRNL-QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  281 (406)
Q Consensus       228 ~~g~l~~~d~~t~~~~~~~~~~-~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g  281 (406)
                       +|.|..||..+++........ .....+++++|++. +.+ ...+.|..|++..
T Consensus       245 -dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~-~~dg~i~iw~~~~  296 (313)
T 3odt_A          245 -DRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDI-IVG-SSDNLVRIFSQEK  296 (313)
T ss_dssp             -TSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCE-EEE-ETTSCEEEEESCG
T ss_pred             -CCEEEEEECCCCceeEEEeccCceEEEEEEccCCCE-EEE-eCCCcEEEEeCCC
Confidence             378999999888755443332 34568999999983 333 4467888888764

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=97.97  E-value=0.0014  Score=63.39  Aligned_cols=204  Identities=11%  Similarity=0.131  Sum_probs=111.1

Q ss_pred             cCcceEEEcCCCCeeEEEecCCEEEEEeCCcee-----------EEEeecCCCccccCCCCCcccccccCCcCCcceEEE
Q 015463           69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWT-----------DFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLR  137 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~  137 (406)
                      ....+++++++|+.|.+|+.+|.|..|+.....           ..........+        -.+............++
T Consensus        29 ~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~--------~~~~~~~~~~~~V~~l~  100 (447)
T 3dw8_B           29 DIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPE--------FDYLKSLEIEEKINKIR  100 (447)
T ss_dssp             GSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCE--------EEGGGTEEECCCCCEEE
T ss_pred             CcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccccccccc--------ccccccccccCceEEEE
Confidence            345788999999988999999999999865111           11111000000        00000000014467899


Q ss_pred             EeCCC--CcEEEEeCCCcEEEEeCCCCeEEEcc-c-----------------------------------ccCCcccccc
Q 015463          138 FDKKT--GDLYIADAYFGLMKVGPEGGLATSLA-T-----------------------------------EAEGVPLRFT  179 (406)
Q Consensus       138 ~d~~~--g~L~Vad~~~gl~~~d~~~~~~~~l~-~-----------------------------------~~~~~~~~~~  179 (406)
                      +.+++  ..|..+...+.|..++..++...... .                                   .........+
T Consensus       101 ~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  180 (447)
T 3dw8_B          101 WLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHI  180 (447)
T ss_dssp             ECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCC
T ss_pred             EcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcce
Confidence            99832  24666665566777776543321000 0                                   0000112346


Q ss_pred             cceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCC-eEEEe-------c-ccCC
Q 015463          180 NDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTK-QTTVL-------L-RNLQ  250 (406)
Q Consensus       180 ~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~-~~~~~-------~-~~~~  250 (406)
                      .++++.++|+++++. .                                +|.|..||..+. +....       . ..-.
T Consensus       181 ~~~~~~~~~~~l~s~-~--------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  227 (447)
T 3dw8_B          181 NSISINSDYETYLSA-D--------------------------------DLRINLWHLEITDRSFNIVDIKPANMEELTE  227 (447)
T ss_dssp             CEEEECTTSSEEEEE-C--------------------------------SSEEEEEETTEEEEEEEEEECCCSSGGGCCC
T ss_pred             EEEEEcCCCCEEEEe-C--------------------------------CCeEEEEECCCCCceeeeeecccccccccCc
Confidence            788888998877764 2                                477888988732 22221       1 1122


Q ss_pred             CcceEEEecCC-CEEEEEeCCCCeEEEEEeeCCCCc--ceeeeecCC------------CCCCceEECCCCCEEEEEcc
Q 015463          251 FPNGLSLSKDK-SFFVFCEGSVGRLHKYWLIGEKAG--NLEAFAILP------------GYPDNVRTNEKGEFWVAIHC  314 (406)
Q Consensus       251 ~~ngi~l~~d~-~~l~v~~t~~~~i~~~~~~g~~~~--~~~~~~~l~------------g~pd~i~~d~~G~lwv~~~~  314 (406)
                      ....++++|++ +.++. ....+.|..+++...+..  ....+..-.            +....++++++|++.++...
T Consensus       228 ~v~~~~~~p~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  305 (447)
T 3dw8_B          228 VITAAEFHPNSCNTFVY-SSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY  305 (447)
T ss_dssp             CEEEEEECSSCTTEEEE-EETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES
T ss_pred             ceEEEEECCCCCcEEEE-EeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC
Confidence            34678999998 65544 445678888887643211  012232111            12345778899997776555

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=97.97  E-value=0.00066  Score=66.05  Aligned_cols=205  Identities=14%  Similarity=0.090  Sum_probs=115.3

Q ss_pred             cCcceEEEcCC-CCeeEEEecCCEEEEEeCCce-eEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc--
Q 015463           69 QGPESMAFDPL-GRGPYTGVADGRILFWDGLKW-TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD--  144 (406)
Q Consensus        69 ~gpe~i~~d~~-g~~ly~g~~~g~I~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~--  144 (406)
                      ..+.++++.++ ++++++++.+|.|..|+.... ...   ..  ...+..      ..........+.++++++ ++.  
T Consensus       129 ~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~---~~--~~~~~~------~~~~~~h~~~v~~l~~~~-~~~~~  196 (430)
T 2xyi_A          129 GEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKP---EP--SGECQP------DLRLRGHQKEGYGLSWNP-NLNGY  196 (430)
T ss_dssp             SCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSC---CT--TCCCCC------SEEEECCSSCCCCEEECT-TSTTE
T ss_pred             CcEEEEEECCCCCcEEEEECCCCcEEEEECCCccccc---Cc--cccCCC------cEEecCCCCCeEEEEeCC-CCCCe
Confidence            45788999987 667888899999998875410 000   00  000000      000111134467899998 444  


Q ss_pred             EEEEeCCCcEEEEeCCCCeE----EEcccccCCcccccccceEEcC-CCCEEEEeCCCchhhhccccccccccccccCCC
Q 015463          145 LYIADAYFGLMKVGPEGGLA----TSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKENIPLQLCSSLND  219 (406)
Q Consensus       145 L~Vad~~~gl~~~d~~~~~~----~~l~~~~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~  219 (406)
                      |..+...+.|..++..++..    ........+ ....+.++++.+ +++++++.+.                       
T Consensus       197 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~~l~s~~~-----------------------  252 (430)
T 2xyi_A          197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTG-HTAVVEDVAWHLLHESLFGSVAD-----------------------  252 (430)
T ss_dssp             EEEECTTSCEEEEETTSCCBGGGEEECSEEECC-CSSCEEEEEECSSCTTEEEEEET-----------------------
T ss_pred             EEEEeCCCeEEEEeCCCCCCCCceeccceeecC-CCCCEeeeEEeCCCCCEEEEEeC-----------------------
Confidence            55555556688888876321    000011111 123477889988 5677766532                       


Q ss_pred             CCCCcccCCCCeEEEEeCCCCe----EEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCC
Q 015463          220 PSPIKITKDTGRVLKYDPTTKQ----TTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPG  295 (406)
Q Consensus       220 ~~~~~~~~~~g~l~~~d~~t~~----~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g  295 (406)
                               +|.|..||..++.    ...+...-...+.++++++++.++++....+.|..|++..... ....+..-.+
T Consensus       253 ---------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-~~~~~~~h~~  322 (430)
T 2xyi_A          253 ---------DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-KLHSFESHKD  322 (430)
T ss_dssp             ---------TSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-CSEEEECCSS
T ss_pred             ---------CCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-CeEEeecCCC
Confidence                     4789999988652    2223222344678999999987666666678899998763211 1122221222


Q ss_pred             CCCceEECCCCC-EEEEEccCCcch
Q 015463          296 YPDNVRTNEKGE-FWVAIHCRRSLY  319 (406)
Q Consensus       296 ~pd~i~~d~~G~-lwv~~~~~~~~~  319 (406)
                      ....++++++|. ++++....+.+.
T Consensus       323 ~v~~i~~sp~~~~~l~s~~~d~~i~  347 (430)
T 2xyi_A          323 EIFQVQWSPHNETILASSGTDRRLH  347 (430)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCCE
T ss_pred             CEEEEEECCCCCCEEEEEeCCCcEE
Confidence            334567888885 555554443433

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.95  E-value=0.0018  Score=60.19  Aligned_cols=136  Identities=10%  Similarity=0.160  Sum_probs=84.8

Q ss_pred             CCCeeEEEe--cCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCC---
Q 015463           79 LGRGPYTGV--ADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAY---  151 (406)
Q Consensus        79 ~g~~ly~g~--~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~---  151 (406)
                      +|..+|...  .+++|++++.+  ..+.+..                         ..+.-|..+  ++.||.+...   
T Consensus        24 ~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~-------------------------~~~~~i~~~--g~~Iyy~~~~~~~   76 (302)
T 3s25_A           24 SDGEVFFSNTNDNGRLYAMNIDGSNIHKLSN-------------------------DTAMYINAD--KNYVYYVRNNNQK   76 (302)
T ss_dssp             ETTEEEEEEGGGTTEEEEEETTSCSCEEEEE-------------------------EEEEEEEEC--SSEEEEEEECC--
T ss_pred             eCCEEEEEeCCCCceEEEEcCCCCCCEEccC-------------------------CceeeEEEc--CCEEEEEECCCCc
Confidence            344467664  26889999877  3333321                         112334443  4566655432   


Q ss_pred             -----------CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCC
Q 015463          152 -----------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDP  220 (406)
Q Consensus       152 -----------~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~  220 (406)
                                 ..|++++.++++.+.+... .      .+.+.++ ++.||+++.+                        
T Consensus        77 ~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~-~------~~~~s~~-g~~Iy~~~~~------------------------  124 (302)
T 3s25_A           77 ITSQTFFSYDRNSLCRIKRNGHGSTVLDPD-P------CIYASLI-GNYIYYLHYD------------------------  124 (302)
T ss_dssp             ----CCSSCCSEEEEEEETTSCCCEEEECS-C------EEEEEEE-TTEEEEEEES------------------------
T ss_pred             ccccceeccCCCeEEEEeCCCCcceEeecC-C------ccEEEEe-CCEEEEEeec------------------------
Confidence                       3699999998876655432 1      1233443 4589998721                        


Q ss_pred             CCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCC
Q 015463          221 SPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE  282 (406)
Q Consensus       221 ~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~  282 (406)
                           ......|++.+.++...+.+.....    .+++++++.+|+++.....|++.+++|.
T Consensus       125 -----~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~  177 (302)
T 3s25_A          125 -----TQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQ  177 (302)
T ss_dssp             -----SSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTT
T ss_pred             -----CCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCC
Confidence                 1123569999998766666654422    3467899999999887789999998763

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=97.95  E-value=0.00097  Score=63.34  Aligned_cols=164  Identities=15%  Similarity=0.115  Sum_probs=101.5

Q ss_pred             cCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-EEE
Q 015463           69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYI  147 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-L~V  147 (406)
                      ....++++.++| .+++++.+|.|..|+....+.+......  .            ..+.....+..+++++ +++ |++
T Consensus       187 ~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~------------~h~~~~~~i~~i~~~~-~~~~l~~  250 (397)
T 1sq9_A          187 QFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQ--H------------SMINNSNSIRSVKFSP-QGSLLAI  250 (397)
T ss_dssp             CCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECC--C---------------CCCCCEEEEEECS-STTEEEE
T ss_pred             CCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEecc--c------------cccccCCccceEEECC-CCCEEEE
Confidence            456889999999 8999999999999997622222111100  0            0000023467899998 555 455


Q ss_pred             EeCC---CcEEEEeCCCCeEEE-cccccC-C-------cccccccceEEcCCCCEEEEeCCCchhhhccccccccccccc
Q 015463          148 ADAY---FGLMKVGPEGGLATS-LATEAE-G-------VPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCS  215 (406)
Q Consensus       148 ad~~---~gl~~~d~~~~~~~~-l~~~~~-~-------~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~  215 (406)
                      +...   +.|..+|..+++... +..... .       .....+.++++.++|.+.++.+.                   
T Consensus       251 ~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------------------  311 (397)
T 1sq9_A          251 AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW-------------------  311 (397)
T ss_dssp             EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET-------------------
T ss_pred             EecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC-------------------
Confidence            5544   568899987765432 221000 0       01235678899999987776532                   


Q ss_pred             cCCCCCCCcccCCCCeEEEEeCCCCeEEEecc------c----------------CCCcceEEEecCC----------CE
Q 015463          216 SLNDPSPIKITKDTGRVLKYDPTTKQTTVLLR------N----------------LQFPNGLSLSKDK----------SF  263 (406)
Q Consensus       216 e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~------~----------------~~~~ngi~l~~d~----------~~  263 (406)
                                   +|.|..||..+++......      .                ....+.+++++|+          +.
T Consensus       312 -------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~  378 (397)
T 1sq9_A          312 -------------DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNES  378 (397)
T ss_dssp             -------------TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCE
T ss_pred             -------------CCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccce
Confidence                         4789999998876544433      2                2345689999998          45


Q ss_pred             EEEEeCCCCeEEEEEeeC
Q 015463          264 FVFCEGSVGRLHKYWLIG  281 (406)
Q Consensus       264 l~v~~t~~~~i~~~~~~g  281 (406)
                      + ++....+.|..|++.+
T Consensus       379 l-~s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          379 L-CCVCLDRSIRWFREAG  395 (397)
T ss_dssp             E-EEEETTTEEEEEEEEC
T ss_pred             E-EEecCCCcEEEEEcCC
Confidence            5 4444567888888763

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=97.94  E-value=0.0019  Score=66.98  Aligned_cols=157  Identities=14%  Similarity=0.137  Sum_probs=102.5

Q ss_pred             cCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC---cE
Q 015463           69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG---DL  145 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g---~L  145 (406)
                      ....++++.++|+.+.+++.++.|..|+...-........                 ..........+++.+ ++   .|
T Consensus       473 ~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~-----------------~~~h~~~v~~~~~~~-~~~~~~l  534 (694)
T 3dm0_A          473 KDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEG-----------------GEGHRDWVSCVRFSP-NTLQPTI  534 (694)
T ss_dssp             SCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSS-----------------TTSCSSCEEEEEECS-CSSSCEE
T ss_pred             CCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccC-----------------CCCCCCcEEEEEEeC-CCCcceE
Confidence            3457889999999899999999999998652111111100                 001123356788887 43   35


Q ss_pred             EEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcc
Q 015463          146 YIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKI  225 (406)
Q Consensus       146 ~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  225 (406)
                      ..+...+.|..+|..+++........    ...+.+++++++|++.++.+.                             
T Consensus       535 ~s~s~d~~v~vwd~~~~~~~~~~~~h----~~~v~~v~~spdg~~l~sg~~-----------------------------  581 (694)
T 3dm0_A          535 VSASWDKTVKVWNLSNCKLRSTLAGH----TGYVSTVAVSPDGSLCASGGK-----------------------------  581 (694)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCC----SSCEEEEEECTTSSEEEEEET-----------------------------
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEcCC----CCCEEEEEEeCCCCEEEEEeC-----------------------------
Confidence            56666677899998877654322111    234778999999988877542                             


Q ss_pred             cCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463          226 TKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  281 (406)
Q Consensus       226 ~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g  281 (406)
                         +|.|..+|..+++...........+.+++++++..+..+.  .+.|..+++..
T Consensus       582 ---Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--~~~i~iwd~~~  632 (694)
T 3dm0_A          582 ---DGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT--EHGIKIWDLES  632 (694)
T ss_dssp             ---TSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEE--TTEEEEEETTT
T ss_pred             ---CCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEc--CCCEEEEECCC
Confidence               4778889988876544343334457889999998765554  35687777653

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.94  E-value=0.0014  Score=68.74  Aligned_cols=186  Identities=6%  Similarity=-0.095  Sum_probs=112.6

Q ss_pred             CcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC-cEEEE
Q 015463           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG-DLYIA  148 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g-~L~Va  148 (406)
                      ...++++.++|+.+.+++.+|.|..|+...........                    ...+....+++.+ ++ .|.++
T Consensus        57 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~--------------------~~~~~v~~~~~s~-~~~~l~~~  115 (814)
T 3mkq_A           57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE--------------------AHPDYIRSIAVHP-TKPYVLSG  115 (814)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE--------------------CCSSCEEEEEECS-SSSEEEEE
T ss_pred             cEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe--------------------cCCCCEEEEEEeC-CCCEEEEE
Confidence            45788999999989999999999999976211111111                    0124467889998 55 46666


Q ss_pred             eCCCcEEEEeCCCC-eEEEcccccCCcccccccceEEcC-CCCEEEEeCCCchhhhccccccccccccccCCCCCCCccc
Q 015463          149 DAYFGLMKVGPEGG-LATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKIT  226 (406)
Q Consensus       149 d~~~gl~~~d~~~~-~~~~l~~~~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~  226 (406)
                      +..+.|..++.+++ .........    ...+.++++.+ +|++.++.+.                              
T Consensus       116 ~~dg~i~vw~~~~~~~~~~~~~~~----~~~v~~~~~~p~~~~~l~~~~~------------------------------  161 (814)
T 3mkq_A          116 SDDLTVKLWNWENNWALEQTFEGH----EHFVMCVAFNPKDPSTFASGCL------------------------------  161 (814)
T ss_dssp             ETTSEEEEEEGGGTSEEEEEEECC----SSCEEEEEEETTEEEEEEEEET------------------------------
T ss_pred             cCCCEEEEEECCCCceEEEEEcCC----CCcEEEEEEEcCCCCEEEEEeC------------------------------
Confidence            66667888888765 322211111    12467888888 7766665432                              


Q ss_pred             CCCCeEEEEeCCCCeEEEe-cccC-CCcceEEEec--CCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEE
Q 015463          227 KDTGRVLKYDPTTKQTTVL-LRNL-QFPNGLSLSK--DKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRT  302 (406)
Q Consensus       227 ~~~g~l~~~d~~t~~~~~~-~~~~-~~~ngi~l~~--d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~  302 (406)
                        +|.|..||..+++.... .... ...+.+++++  ++..++.+ ...+.|..+++...+  ....+..-.+....+++
T Consensus       162 --dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~--~~~~~~~~~~~v~~~~~  236 (814)
T 3mkq_A          162 --DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA-SDDLTIKIWDYQTKS--CVATLEGHMSNVSFAVF  236 (814)
T ss_dssp             --TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEE-CTTSEEEEEETTTTE--EEEEEECCSSCEEEEEE
T ss_pred             --CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEE-eCCCEEEEEECCCCc--EEEEEcCCCCCEEEEEE
Confidence              37788999876543322 2222 4457788988  88766554 456788888865321  11112111122345677


Q ss_pred             CCCCCEEEEEccC
Q 015463          303 NEKGEFWVAIHCR  315 (406)
Q Consensus       303 d~~G~lwv~~~~~  315 (406)
                      +++|.+.++....
T Consensus       237 ~~~~~~l~~~~~d  249 (814)
T 3mkq_A          237 HPTLPIIISGSED  249 (814)
T ss_dssp             CSSSSEEEEEETT
T ss_pred             cCCCCEEEEEeCC
Confidence            8888866555443

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=97.94  E-value=0.0046  Score=68.33  Aligned_cols=189  Identities=11%  Similarity=-0.004  Sum_probs=114.9

Q ss_pred             cCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc--EE
Q 015463           69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD--LY  146 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~--L~  146 (406)
                      ....+++++++|+.+.+++.+|.|..|+...-+......                    ...+....+++.++.+.  +.
T Consensus       658 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~--------------------~~~~~v~~~~~~~~~~~~~l~  717 (1249)
T 3sfz_A          658 DEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD--------------------EHSEQVNCCHFTNKSNHLLLA  717 (1249)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--------------------CCSSCEEEEEECSSSSCCEEE
T ss_pred             CCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEc--------------------CCCCcEEEEEEecCCCceEEE
Confidence            345788999999988999999999999976211111111                    01233567888763222  33


Q ss_pred             EEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCccc
Q 015463          147 IADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKIT  226 (406)
Q Consensus       147 Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~  226 (406)
                      .+...+.|..+|..+++.......    ....+.++++.++|++.++.+.                              
T Consensus       718 sg~~d~~v~vwd~~~~~~~~~~~~----h~~~v~~~~~sp~~~~l~s~s~------------------------------  763 (1249)
T 3sfz_A          718 TGSNDFFLKLWDLNQKECRNTMFG----HTNSVNHCRFSPDDELLASCSA------------------------------  763 (1249)
T ss_dssp             EEETTSCEEEEETTSSSEEEEECC----CSSCEEEEEECSSTTEEEEEES------------------------------
T ss_pred             EEeCCCeEEEEECCCcchhheecC----CCCCEEEEEEecCCCEEEEEEC------------------------------
Confidence            444446688999887764332211    1234778899999987776532                              


Q ss_pred             CCCCeEEEEeCCCCeEEEeccc--------------CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee-
Q 015463          227 KDTGRVLKYDPTTKQTTVLLRN--------------LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-  291 (406)
Q Consensus       227 ~~~g~l~~~d~~t~~~~~~~~~--------------~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~-  291 (406)
                        +|.|..||..+++.......              ......+++++|++.++++.  .+.+..+++....  ....+. 
T Consensus       764 --dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--~~~v~~~d~~~~~--~~~~~~~  837 (1249)
T 3sfz_A          764 --DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA--KNKVLLFDIHTSG--LLAEIHT  837 (1249)
T ss_dssp             --SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE--TTEEEEEETTTCC--EEEEEEC
T ss_pred             --CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc--CCcEEEEEecCCC--ceeEEcC
Confidence              36788888776654322110              11235678999999887765  4688888865321  111111 


Q ss_pred             cCCCCCCceEECCCCCEEEEEccCCc
Q 015463          292 ILPGYPDNVRTNEKGEFWVAIHCRRS  317 (406)
Q Consensus       292 ~l~g~pd~i~~d~~G~lwv~~~~~~~  317 (406)
                      .-.+....++++++|++.++......
T Consensus       838 ~~~~~v~~~~~sp~~~~l~~~~~dg~  863 (1249)
T 3sfz_A          838 GHHSTIQYCDFSPYDHLAVIALSQYC  863 (1249)
T ss_dssp             SSSSCCCEEEECSSTTEEEEECSSSC
T ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCe
Confidence            11233456778888887666554433

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=97.93  E-value=0.0083  Score=56.05  Aligned_cols=146  Identities=8%  Similarity=-0.005  Sum_probs=89.2

Q ss_pred             CcceEEEEeC--CCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccc
Q 015463          131 GRPLGLRFDK--KTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKEN  208 (406)
Q Consensus       131 ~~p~gi~~d~--~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~  208 (406)
                      +....+++++  ++..+..+...+.|..+|.++++.......   .....+..+++.++|.+.++.+.            
T Consensus       126 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~---~~~~~i~~~~~~pdg~~lasg~~------------  190 (343)
T 3lrv_A          126 NEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA---KSDVEYSSGVLHKDSLLLALYSP------------  190 (343)
T ss_dssp             SCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC---CSSCCCCEEEECTTSCEEEEECT------------
T ss_pred             CCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec---CCCCceEEEEECCCCCEEEEEcC------------
Confidence            3456788876  444455566667799999888765332211   11224778999999988877432            


Q ss_pred             ccccccccCCCCCCCcccCCCCeEEEEeCCCCeEE--Eecc-cCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCC-
Q 015463          209 IPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTT--VLLR-NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKA-  284 (406)
Q Consensus       209 ~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~--~~~~-~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~-  284 (406)
                                          +|.|..||..+++..  .+.. .......++++|++..+..+..  +.|..+++...+. 
T Consensus       191 --------------------dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~--~~v~iwd~~~~~~~  248 (343)
T 3lrv_A          191 --------------------DGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD--QTVVCFDLRKDVGT  248 (343)
T ss_dssp             --------------------TSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES--SBEEEEETTSSTTC
T ss_pred             --------------------CCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC--CeEEEEEcCCCCcc
Confidence                                477999999887643  3322 2334578999999988776653  3888888764321 


Q ss_pred             cceeeeecCCCCCC---ceEECCCCCEEEEEcc
Q 015463          285 GNLEAFAILPGYPD---NVRTNEKGEFWVAIHC  314 (406)
Q Consensus       285 ~~~~~~~~l~g~pd---~i~~d~~G~lwv~~~~  314 (406)
                      .....+. ....+-   .++++++|.+.++...
T Consensus       249 ~~~~~~~-~~~~~~~~~~~~~~~~g~~l~~~s~  280 (343)
T 3lrv_A          249 LAYPTYT-IPEFKTGTVTYDIDDSGKNMIAYSN  280 (343)
T ss_dssp             BSSCCCB-C-----CCEEEEECTTSSEEEEEET
T ss_pred             eeecccc-cccccccceEEEECCCCCEEEEecC
Confidence            1111111 011222   3888999987766443

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=97.92  E-value=0.0027  Score=58.26  Aligned_cols=194  Identities=13%  Similarity=0.061  Sum_probs=105.9

Q ss_pred             cCcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC-CCcE
Q 015463           69 QGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK-TGDL  145 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~-~g~L  145 (406)
                      ..-.+++++++|+.+.+++.|+.|..|+..  ....+..                    .....+....+++.+. ++++
T Consensus        10 ~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~--------------------l~gH~~~V~~v~~s~~~~g~~   69 (297)
T 2pm7_B           10 EMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDT--------------------LTGHEGPVWRVDWAHPKFGTI   69 (297)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEE--------------------ECCCSSCEEEEEECCGGGCSE
T ss_pred             CceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEE--------------------EccccCCeEEEEecCCCcCCE
Confidence            345688999999989999999999998754  1111111                    0111244567888642 2554


Q ss_pred             -EEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCC--CCEEEEeCCCchhhhccccccccccccccCCCCCC
Q 015463          146 -YIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDE--GNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSP  222 (406)
Q Consensus       146 -~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~d--G~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  222 (406)
                       ..+...+.|..+|.++++...+... .+ ....++++++.++  |.+.++.+.                          
T Consensus        70 l~s~s~D~~v~iWd~~~~~~~~~~~~-~~-h~~~v~~v~~~p~~~g~~l~s~s~--------------------------  121 (297)
T 2pm7_B           70 LASCSYDGKVMIWKEENGRWSQIAVH-AV-HSASVNSVQWAPHEYGPMLLVASS--------------------------  121 (297)
T ss_dssp             EEEEETTTEEEEEEBSSSCBCCCEEE-CC-CSSCEEEEEECCGGGCSEEEEEET--------------------------
T ss_pred             EEEEcCCCEEEEEEcCCCceEEEEEe-ec-CCCceeEEEeCcCCCCcEEEEEEC--------------------------
Confidence             4555556788888876642221111 11 1134678888876  766665432                          


Q ss_pred             CcccCCCCeEEEEeCCCCe---EEEecccCCCcceEEEecC-------------CCEEEEEeCCCCeEEEEEeeCCCCcc
Q 015463          223 IKITKDTGRVLKYDPTTKQ---TTVLLRNLQFPNGLSLSKD-------------KSFFVFCEGSVGRLHKYWLIGEKAGN  286 (406)
Q Consensus       223 ~~~~~~~g~l~~~d~~t~~---~~~~~~~~~~~ngi~l~~d-------------~~~l~v~~t~~~~i~~~~~~g~~~~~  286 (406)
                            +|.+..+|..++.   ...+.......+.++++|+             ++.+ ++....+.|..+++..... .
T Consensus       122 ------d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l-~sgs~D~~v~lwd~~~~~~-~  193 (297)
T 2pm7_B          122 ------DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF-VTGGADNLVKIWKYNSDAQ-T  193 (297)
T ss_dssp             ------TSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEE-EEEETTSCEEEEEEETTTT-E
T ss_pred             ------CCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceE-EEEcCCCcEEEEEEcCCCc-e
Confidence                  3667777766542   1122222223456778876             3344 4444556777777763221 1


Q ss_pred             eeeeecCCCCC---CceEECCCC---CEEEEEccCCcc
Q 015463          287 LEAFAILPGYP---DNVRTNEKG---EFWVAIHCRRSL  318 (406)
Q Consensus       287 ~~~~~~l~g~p---d~i~~d~~G---~lwv~~~~~~~~  318 (406)
                      ......+.+..   ..+++++++   .+.++....+.+
T Consensus       194 ~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v  231 (297)
T 2pm7_B          194 YVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTC  231 (297)
T ss_dssp             EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCE
T ss_pred             EEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcE
Confidence            11122233333   346677774   455554444443

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=97.92  E-value=0.0017  Score=61.89  Aligned_cols=156  Identities=15%  Similarity=0.106  Sum_probs=99.1

Q ss_pred             ceEEEcC-CCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE-
Q 015463           72 ESMAFDP-LGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA-  148 (406)
Q Consensus        72 e~i~~d~-~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va-  148 (406)
                      .++.+.+ +++.+.+|+.+|.|..||.. .-..+...                    ....+....+++.+ +++++++ 
T Consensus       209 ~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~--------------------~~h~~~v~~v~~~p-~~~~l~s~  267 (380)
T 3iz6_a          209 LSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY--------------------HGHEGDINSVKFFP-DGQRFGTG  267 (380)
T ss_dssp             EEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEE--------------------CCCSSCCCEEEECT-TSSEEEEE
T ss_pred             EEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEE--------------------CCcCCCeEEEEEec-CCCeEEEE
Confidence            4566654 67878899999999999864 11111100                    01124467899999 6665544 


Q ss_pred             eCCCcEEEEeCCCCeEEEcccccC---CcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcc
Q 015463          149 DAYFGLMKVGPEGGLATSLATEAE---GVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKI  225 (406)
Q Consensus       149 d~~~gl~~~d~~~~~~~~l~~~~~---~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  225 (406)
                      ...+.|..+|..+++.........   ......+..+++.++|.+.++.+.                             
T Consensus       268 s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-----------------------------  318 (380)
T 3iz6_a          268 SDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS-----------------------------  318 (380)
T ss_dssp             CSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT-----------------------------
T ss_pred             cCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEEC-----------------------------
Confidence            444668899998876433221111   112234778999999988877543                             


Q ss_pred             cCCCCeEEEEeCCCCeEEEecc----c-CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463          226 TKDTGRVLKYDPTTKQTTVLLR----N-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  281 (406)
Q Consensus       226 ~~~~g~l~~~d~~t~~~~~~~~----~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g  281 (406)
                         +|.+..||..+++......    + ....+.++++||++.+ ++....+.|..+++.+
T Consensus       319 ---dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          319 ---NGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSAL-CTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             ---TSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEE-EEECTTSCEEEEECCS
T ss_pred             ---CCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEE-EEeeCCCCEEEEecCC
Confidence               4779999987776543221    1 1234689999999876 4555567787777764

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=97.91  E-value=0.0022  Score=60.10  Aligned_cols=193  Identities=11%  Similarity=0.052  Sum_probs=108.0

Q ss_pred             cCcceEEEcCC--CCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC--C
Q 015463           69 QGPESMAFDPL--GRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK--T  142 (406)
Q Consensus        69 ~gpe~i~~d~~--g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~--~  142 (406)
                      ....++++.++  ++.++++..+|.|..|+..  .+.......                    ........+++.++  .
T Consensus        56 ~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--------------------~~~~~v~~~~~~~~~~~  115 (379)
T 3jrp_A           56 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHA--------------------VHSASVNSVQWAPHEYG  115 (379)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEEC--------------------CCSSCEEEEEECCGGGC
T ss_pred             CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeec--------------------CCCcceEEEEeCCCCCC
Confidence            34467888765  8889999999999999865  222222111                    11244678899883  2


Q ss_pred             CcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcC-------------CCCEEEEeCCCchhhhccccccc
Q 015463          143 GDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-------------EGNVYFTDSSTNYQRRQMQKENI  209 (406)
Q Consensus       143 g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~-------------dG~ly~t~~~~~~~~~~~~~~~~  209 (406)
                      ..|+++...+.|..+|..++........ .+ ....+..+++.+             ++.+.++.+.             
T Consensus       116 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------  180 (379)
T 3jrp_A          116 PLLLVASSDGKVSVVEFKENGTTSPIII-DA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA-------------  180 (379)
T ss_dssp             SEEEEEETTSEEEEEECCTTSCCCEEEE-EC-CTTCEEEEEECCCC----------CTTCEEEEEET-------------
T ss_pred             CEEEEecCCCcEEEEecCCCCceeeEEe-cC-CCCceEEEEEcCccccccccccCCCCCCEEEEEeC-------------
Confidence            3456666666788888876521110000 00 112466778877             5766665432             


Q ss_pred             cccccccCCCCCCCcccCCCCeEEEEeCCCCeE--E---EecccCCCcceEEEecC---CCEEEEEeCCCCeEEEEEeeC
Q 015463          210 PLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQT--T---VLLRNLQFPNGLSLSKD---KSFFVFCEGSVGRLHKYWLIG  281 (406)
Q Consensus       210 ~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~--~---~~~~~~~~~ngi~l~~d---~~~l~v~~t~~~~i~~~~~~g  281 (406)
                                         +|.|..||..+++.  .   .+.........++++|+   ++.++.+ ...+.|..|++..
T Consensus       181 -------------------dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~-~~dg~i~iwd~~~  240 (379)
T 3jrp_A          181 -------------------DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV-SQDRTCIIWTQDN  240 (379)
T ss_dssp             -------------------TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE-ETTSCEEEEEESS
T ss_pred             -------------------CCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEE-eCCCEEEEEeCCC
Confidence                               36688887665431  1   11112233568999999   6655444 4567888888764


Q ss_pred             CCCcceeeeecC---CCCCCceEECCCCCEEEEEccCC
Q 015463          282 EKAGNLEAFAIL---PGYPDNVRTNEKGEFWVAIHCRR  316 (406)
Q Consensus       282 ~~~~~~~~~~~l---~g~pd~i~~d~~G~lwv~~~~~~  316 (406)
                      ............   .+....++++++|.+.++.....
T Consensus       241 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  278 (379)
T 3jrp_A          241 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN  278 (379)
T ss_dssp             TTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSS
T ss_pred             CCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCC
Confidence            321111122111   22233567788888555544333

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=97.90  E-value=0.0012  Score=63.48  Aligned_cols=196  Identities=13%  Similarity=0.093  Sum_probs=109.3

Q ss_pred             CcceEEEcC--CCCeeEEEecCC----EEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC
Q 015463           70 GPESMAFDP--LGRGPYTGVADG----RILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK  141 (406)
Q Consensus        70 gpe~i~~d~--~g~~ly~g~~~g----~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~  141 (406)
                      ...+|++|+  .++ +|+++..|    +|++.+..  .|+.+.....-.....         ........+..+|++++.
T Consensus        56 ~v~~i~~dp~~~~~-l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~---------~~~~~~~~~i~~l~~~~~  125 (394)
T 3b7f_A           56 TIHHIVQDPREPER-MLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPE---------GETGRVVDHVFWLTPGHA  125 (394)
T ss_dssp             EEEEEEECSSSTTC-EEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC-------------CCCCCEEEEEEECCT
T ss_pred             ceEEEEECCCCCCe-EEEEecCCCCCccEEEeCCCCCCceECCccccCCCccc---------ccccccccceeEEEeCCC
Confidence            457899998  566 99999887    89998654  6665532100000000         000000123457888852


Q ss_pred             --CCcEEEEeCCCcEEEEeCCCCeEEEccccc--C------------CcccccccceEEcC--CCCEEEEeCCCchhhhc
Q 015463          142 --TGDLYIADAYFGLMKVGPEGGLATSLATEA--E------------GVPLRFTNDLDIDD--EGNVYFTDSSTNYQRRQ  203 (406)
Q Consensus       142 --~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~--~------------~~~~~~~~~l~~d~--dG~ly~t~~~~~~~~~~  203 (406)
                        .+.||++....+|++.+-.+...+.+....  .            +.....+..|++|+  .+.||++...       
T Consensus       126 ~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~-------  198 (394)
T 3b7f_A          126 SEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSS-------  198 (394)
T ss_dssp             TSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEET-------
T ss_pred             CCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECC-------
Confidence              578999987789999976666655543210  0            11122356788886  4689998642       


Q ss_pred             cccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCC-------------CcceEEEecC-CCEEEEEeC
Q 015463          204 MQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQ-------------FPNGLSLSKD-KSFFVFCEG  269 (406)
Q Consensus       204 ~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~-------------~~ngi~l~~d-~~~l~v~~t  269 (406)
                                                ++|++.+..+...+.+.....             ....|+++++ .+.+|+.. 
T Consensus       199 --------------------------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~-  251 (394)
T 3b7f_A          199 --------------------------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN-  251 (394)
T ss_dssp             --------------------------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE-
T ss_pred             --------------------------CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc-
Confidence                                      568887766555555532211             1345677764 35677764 


Q ss_pred             CCCeEEEEEeeCCCCcceeeee-cCCC----CCCceEEC--CCCCEEEEEc
Q 015463          270 SVGRLHKYWLIGEKAGNLEAFA-ILPG----YPDNVRTN--EKGEFWVAIH  313 (406)
Q Consensus       270 ~~~~i~~~~~~g~~~~~~~~~~-~l~g----~pd~i~~d--~~G~lwv~~~  313 (406)
                       ...|++.+-.|.   +.+.+. .++.    +...+++|  ..+.+|+++.
T Consensus       252 -~~gl~~s~D~G~---tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~  298 (394)
T 3b7f_A          252 -HCGIYRMDRREG---VWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPM  298 (394)
T ss_dssp             -TTEEEEEETTTT---EEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEEC
T ss_pred             -CCeEEEeCCCCC---cceECCCCCCCCCccceEEEEECCCCCCEEEEEec
Confidence             357887763331   222221 1221    11135666  4578999874

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=97.89  E-value=0.0022  Score=59.77  Aligned_cols=105  Identities=11%  Similarity=0.097  Sum_probs=66.1

Q ss_pred             cCcccCcceEEEcCC---CCeeEEEecCCEEEEEeCCc-eeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeC
Q 015463           65 LNQIQGPESMAFDPL---GRGPYTGVADGRILFWDGLK-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK  140 (406)
Q Consensus        65 ~~~~~gpe~i~~d~~---g~~ly~g~~~g~I~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~  140 (406)
                      .+.-....++++.++   |+.+++++.+|.|..|+... -..+...                   .....+....+++.+
T Consensus        36 ~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~   96 (368)
T 3mmy_A           36 SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKA-------------------QQMHTGPVLDVCWSD   96 (368)
T ss_dssp             SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEE-------------------EEECSSCEEEEEECT
T ss_pred             cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEE-------------------eccccCCEEEEEECc
Confidence            344455688999998   58899999999999998641 1111000                   000124467899998


Q ss_pred             CCCc-EEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEE--cCCCCEEEEe
Q 015463          141 KTGD-LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDI--DDEGNVYFTD  194 (406)
Q Consensus       141 ~~g~-L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~--d~dG~ly~t~  194 (406)
                       +++ |+.+...+.|..+|.++++...+...     ...+.++++  .++|++.++.
T Consensus        97 -~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~~~  147 (368)
T 3mmy_A           97 -DGSKVFTASCDKTAKMWDLSSNQAIQIAQH-----DAPVKTIHWIKAPNYSCVMTG  147 (368)
T ss_dssp             -TSSEEEEEETTSEEEEEETTTTEEEEEEEC-----SSCEEEEEEEECSSCEEEEEE
T ss_pred             -CCCEEEEEcCCCcEEEEEcCCCCceeeccc-----cCceEEEEEEeCCCCCEEEEc
Confidence             554 56666566789999988876543221     123566777  7777655553

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=97.89  E-value=0.002  Score=66.07  Aligned_cols=149  Identities=13%  Similarity=0.030  Sum_probs=85.4

Q ss_pred             CcceEEEEeCCCCc-EEEEeCC----------CcEEEEeCCC------CeEEEcc-cccCCcccccccceEEcCCCC-EE
Q 015463          131 GRPLGLRFDKKTGD-LYIADAY----------FGLMKVGPEG------GLATSLA-TEAEGVPLRFTNDLDIDDEGN-VY  191 (406)
Q Consensus       131 ~~p~gi~~d~~~g~-L~Vad~~----------~gl~~~d~~~------~~~~~l~-~~~~~~~~~~~~~l~~d~dG~-ly  191 (406)
                      .+..++++++ +|+ |+.+...          ..|+++|.++      ++.+.+. ..     ......+++.+||+ |+
T Consensus       130 ~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~SpDG~~la  203 (662)
T 3azo_A          130 LRWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDA-----HRFVTGPRLSPDGRQAV  203 (662)
T ss_dssp             EEEEEEEEET-TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSC-----SSEECCCEECTTSSEEE
T ss_pred             ccccCcEECC-CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecC-----CCcccCceECCCCCEEE
Confidence            3456789999 554 5555432          3699999988      6666554 21     12456788999996 55


Q ss_pred             EEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCC-CC---eEEEeccc-CCCcceEEEecCCCEEEE
Q 015463          192 FTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPT-TK---QTTVLLRN-LQFPNGLSLSKDKSFFVF  266 (406)
Q Consensus       192 ~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~-t~---~~~~~~~~-~~~~ngi~l~~d~~~l~v  266 (406)
                      ++....  ....|                       ....|+.+|.+ ++   +.+.+..+ ......+++++|++ +++
T Consensus       204 ~~~~~~--~~~~~-----------------------~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~  257 (662)
T 3azo_A          204 WLAWDH--PRMPW-----------------------EGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIV  257 (662)
T ss_dssp             EEEECT--TCCTT-----------------------TCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEE
T ss_pred             EEECCC--CCCCC-----------------------CCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEE
Confidence            554210  00000                       12469999988 56   55555543 24556789999999 555


Q ss_pred             EeCCCC--eEEEEEeeCCCCcceeeeecC---CCC------CCceEECCCCCEEEEEcc
Q 015463          267 CEGSVG--RLHKYWLIGEKAGNLEAFAIL---PGY------PDNVRTNEKGEFWVAIHC  314 (406)
Q Consensus       267 ~~t~~~--~i~~~~~~g~~~~~~~~~~~l---~g~------pd~i~~d~~G~lwv~~~~  314 (406)
                      +....+  +|+++++++.   ..+.+...   .+.      ...+++.++|.+++....
T Consensus       258 ~~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~  313 (662)
T 3azo_A          258 ATDRTGWWNLHRVDPATG---AATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK  313 (662)
T ss_dssp             EECTTSSCEEEEECTTTC---CEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS
T ss_pred             EECCCCCeEEEEEECCCC---ceeecccccccccCccccccCceEeEeCCCEEEEEEEc
Confidence            544344  7888876432   22222110   000      134666677887665543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=97.87  E-value=0.0025  Score=59.02  Aligned_cols=151  Identities=11%  Similarity=-0.009  Sum_probs=96.5

Q ss_pred             cCcceEEEcCCCC-eeEEEecCCEEEEEeC-C--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc
Q 015463           69 QGPESMAFDPLGR-GPYTGVADGRILFWDG-L--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (406)
Q Consensus        69 ~gpe~i~~d~~g~-~ly~g~~~g~I~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~  144 (406)
                      ....++++.++++ .+++++.+|.|..|+. .  ....+..                     .........+++.+ ++.
T Consensus        57 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~---------------------~~~~~~v~~l~~~~-~~~  114 (342)
T 1yfq_A           57 HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTN---------------------NEANLGICRICKYG-DDK  114 (342)
T ss_dssp             SCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBS---------------------CCCCSCEEEEEEET-TTE
T ss_pred             CceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccc---------------------cCCCCceEEEEeCC-CCE
Confidence            3557889999999 8999999999999987 6  2211100                     00124467889998 667


Q ss_pred             EEEEeCCCcEEEEeCCC---------CeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccc
Q 015463          145 LYIADAYFGLMKVGPEG---------GLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCS  215 (406)
Q Consensus       145 L~Vad~~~gl~~~d~~~---------~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~  215 (406)
                      |+.+...+.|..+|..+         ++.  +.. ..  ....+.++++.+++ ++++..                    
T Consensus       115 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~-~~--~~~~v~~~~~~~~~-l~~~~~--------------------  168 (342)
T 1yfq_A          115 LIAASWDGLIEVIDPRNYGDGVIAVKNLN--SNN-TK--VKNKIFTMDTNSSR-LIVGMN--------------------  168 (342)
T ss_dssp             EEEEETTSEEEEECHHHHTTBCEEEEESC--SSS-SS--SCCCEEEEEECSSE-EEEEES--------------------
T ss_pred             EEEEcCCCeEEEEcccccccccccccCCe--eeE-Ee--eCCceEEEEecCCc-EEEEeC--------------------
Confidence            77777767788888654         221  111 11  12346678888877 555543                    


Q ss_pred             cCCCCCCCcccCCCCeEEEEeCCC-Ce--EEEec-ccCCCcceEEEec-CCCEEEEEeCCCCeEEEEEeeC
Q 015463          216 SLNDPSPIKITKDTGRVLKYDPTT-KQ--TTVLL-RNLQFPNGLSLSK-DKSFFVFCEGSVGRLHKYWLIG  281 (406)
Q Consensus       216 e~~~~~~~~~~~~~g~l~~~d~~t-~~--~~~~~-~~~~~~ngi~l~~-d~~~l~v~~t~~~~i~~~~~~g  281 (406)
                                   +|.|..||..+ +.  ..... ..-.....+++++ +++.++++.. .+.|..++.+.
T Consensus       169 -------------d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~-dg~i~i~~~~~  225 (342)
T 1yfq_A          169 -------------NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI-DGRVAVEFFDD  225 (342)
T ss_dssp             -------------TTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET-TSEEEEEECCT
T ss_pred             -------------CCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec-CCcEEEEEEcC
Confidence                         36788999876 33  22222 2223457889999 9987766654 67777777653

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.87  E-value=0.00048  Score=66.05  Aligned_cols=203  Identities=9%  Similarity=-0.058  Sum_probs=110.3

Q ss_pred             cCcceEEEcCCCCeeEEEec--CCEEEE--EeCCceeEEEeec-------CCC--ccccCCCC------Cc----cccc-
Q 015463           69 QGPESMAFDPLGRGPYTGVA--DGRILF--WDGLKWTDFAFTS-------NNR--SELCNPKP------IA----TSYL-  124 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~--~g~I~~--~~~~~~~~~~~~~-------~~~--~~~~~~~~------~~----~~~~-  124 (406)
                      ..|+.+++++||+.+|+...  +..+..  +|......+....       ...  ...|....      .+    .... 
T Consensus       124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~  203 (368)
T 1mda_H          124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVG  203 (368)
T ss_dssp             CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECC
T ss_pred             CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEE
Confidence            46999999999998999865  345666  6654322221000       000  00011000      00    0000 


Q ss_pred             ----ccCCcCCcceEEEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccc-cC-C---cccccccc---eEEcCCC-CEE
Q 015463          125 ----KNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATE-AE-G---VPLRFTND---LDIDDEG-NVY  191 (406)
Q Consensus       125 ----~~~~~~~~p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~-~~-~---~~~~~~~~---l~~d~dG-~ly  191 (406)
                          .......+|.  . .++++.+|+.+. +.++.+|..++..+....- .. .   .....|.+   +++++|| ++|
T Consensus       204 ~~~t~~i~vg~~P~--~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~ly  279 (368)
T 1mda_H          204 AQCTGAQNCSSQAA--Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIM  279 (368)
T ss_dssp             CCSCTTSCBCSCCE--E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEE
T ss_pred             EEeeeeeeCCCCcc--c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEE
Confidence                0011233454  3 443566676666 7899999875433222110 00 0   00112223   7888887 688


Q ss_pred             EEeC-C-CchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeC
Q 015463          192 FTDS-S-TNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEG  269 (406)
Q Consensus       192 ~t~~-~-~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t  269 (406)
                      ++.. . ..              .+           .. .+.+..+|.++++.......-..|+|+++++|++.+|++..
T Consensus       280 V~~~~~~~~--------------~~-----------~~-~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~  333 (368)
T 1mda_H          280 ILTVEHSRS--------------CL-----------AA-AENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANS  333 (368)
T ss_dssp             EEEEECSSC--------------TT-----------SC-EEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEE
T ss_pred             EEeccccCc--------------cc-----------cc-CCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEcc
Confidence            8752 1 00              00           00 13467999998876554433346899999999998888877


Q ss_pred             -CCCeEEEEEeeCCCCcceeeeecCCCCCCceEECC
Q 015463          270 -SVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNE  304 (406)
Q Consensus       270 -~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~  304 (406)
                       ..+.|..+++..   .+....+...+.|+++++..
T Consensus       334 ~~~~~VsVID~~t---~kvv~~I~vg~~P~~i~~~~  366 (368)
T 1mda_H          334 AGTEVLDIYDAAS---DQDQSSVELDKGPESLSVQN  366 (368)
T ss_dssp             TTTTEEEEEESSS---CEEEEECCCCSCCCEEECCC
T ss_pred             CCCCeEEEEECCC---CcEEEEEECCCCCCEEEeec
Confidence             578999999753   22111223456799988754

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=97.87  E-value=0.0059  Score=57.10  Aligned_cols=185  Identities=10%  Similarity=0.006  Sum_probs=108.6

Q ss_pred             CCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCCCcE
Q 015463           78 PLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGL  154 (406)
Q Consensus        78 ~~g~~ly~g~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~~gl  154 (406)
                      .+++.+++|..+|.|..|+..   ....+....                  .......|. ++-...++.+.+-+....+
T Consensus        46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~------------------v~~~~~~~~-~~s~s~D~~i~~w~~~~~~  106 (343)
T 3lrv_A           46 YDKWVCMCRCEDGALHFTQLKDSKTITTITTPN------------------PRTGGEHPA-IISRGPCNRLLLLYPGNQI  106 (343)
T ss_dssp             EEEEEEEEEEETTEEEEEEESSSSCEEEEEEEC------------------CCTTCCCCS-EEEECSTTEEEEEETTTEE
T ss_pred             CCCCEEEEECCCCcEEEEECCCCcEEEEEecCC------------------ceeeeeCCc-eEEecCCCeEEEEEccCce
Confidence            356678999999999999865   222222110                  001112233 3333336777777777777


Q ss_pred             EEEeCCCCeE-EEcccccCCcccccccceEEcC--CCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCe
Q 015463          155 MKVGPEGGLA-TSLATEAEGVPLRFTNDLDIDD--EGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGR  231 (406)
Q Consensus       155 ~~~d~~~~~~-~~l~~~~~~~~~~~~~~l~~d~--dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~  231 (406)
                      ..++..+++. ..+....    ...+.++++.+  +|+++++.+.                                +|.
T Consensus       107 ~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~s~s~--------------------------------dg~  150 (343)
T 3lrv_A          107 TILDSKTNKVLREIEVDS----ANEIIYMYGHNEVNTEYFIWADN--------------------------------RGT  150 (343)
T ss_dssp             EEEETTTCCEEEEEECCC----SSCEEEEECCC---CCEEEEEET--------------------------------TCC
T ss_pred             EEeecCCcceeEEeecCC----CCCEEEEEcCCCCCCCEEEEEeC--------------------------------CCc
Confidence            7788777652 2221111    12467888999  8888876532                                477


Q ss_pred             EEEEeCCCCeEEEeccc--CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeec-CCCCCCceEECCCCCE
Q 015463          232 VLKYDPTTKQTTVLLRN--LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI-LPGYPDNVRTNEKGEF  308 (406)
Q Consensus       232 l~~~d~~t~~~~~~~~~--~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~-l~g~pd~i~~d~~G~l  308 (406)
                      +..||..+++.......  ......++++||+..+. +....+.|..+++...+.-. ..+.. -.+....++++++|.+
T Consensus       151 i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~la-sg~~dg~i~iwd~~~~~~~~-~~~~~~h~~~v~~l~fs~~g~~  228 (343)
T 3lrv_A          151 IGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLA-LYSPDGILDVYNLSSPDQAS-SRFPVDEEAKIKEVKFADNGYW  228 (343)
T ss_dssp             EEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEE-EECTTSCEEEEESSCTTSCC-EECCCCTTSCEEEEEECTTSSE
T ss_pred             EEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEE-EEcCCCEEEEEECCCCCCCc-cEEeccCCCCEEEEEEeCCCCE
Confidence            99999988876443322  22357899999998654 44556789889876432110 12211 1222345778899987


Q ss_pred             EEEEccCCcchh
Q 015463          309 WVAIHCRRSLYS  320 (406)
Q Consensus       309 wv~~~~~~~~~~  320 (406)
                      .++...+ .+..
T Consensus       229 l~s~~~~-~v~i  239 (343)
T 3lrv_A          229 MVVECDQ-TVVC  239 (343)
T ss_dssp             EEEEESS-BEEE
T ss_pred             EEEEeCC-eEEE
Confidence            6665544 4433

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=97.86  E-value=0.00093  Score=63.41  Aligned_cols=155  Identities=12%  Similarity=0.033  Sum_probs=102.1

Q ss_pred             cCcceEEEcC-CCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcE
Q 015463           69 QGPESMAFDP-LGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL  145 (406)
Q Consensus        69 ~gpe~i~~d~-~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L  145 (406)
                      ....++++.+ +++.+++++.+|.|..|+..  ....+....                    ........+++.++...|
T Consensus       119 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--------------------~~~~~v~~~~~~~~~~~l  178 (383)
T 3ei3_B          119 DAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTD--------------------SWDYWYCCVDVSVSRQML  178 (383)
T ss_dssp             CBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCC--------------------CSSCCEEEEEEETTTTEE
T ss_pred             CceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccC--------------------CCCCCeEEEEECCCCCEE
Confidence            3456888988 67778999999999999876  222221100                    012346788999844445


Q ss_pred             EEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCCCCCCc
Q 015463          146 YIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIK  224 (406)
Q Consensus       146 ~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  224 (406)
                      +++...+.|..+|.++..+..+...     ...+.++++.++|. ++++.+.                            
T Consensus       179 ~~~~~d~~i~i~d~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~l~s~~~----------------------------  225 (383)
T 3ei3_B          179 ATGDSTGRLLLLGLDGHEIFKEKLH-----KAKVTHAEFNPRCDWLMATSSV----------------------------  225 (383)
T ss_dssp             EEEETTSEEEEEETTSCEEEEEECS-----SSCEEEEEECSSCTTEEEEEET----------------------------
T ss_pred             EEECCCCCEEEEECCCCEEEEeccC-----CCcEEEEEECCCCCCEEEEEeC----------------------------
Confidence            6666667788999866555444321     23577899999997 6666432                            


Q ss_pred             ccCCCCeEEEEeCCC----CeEEEecccCCCcceEEEec-CCCEEEEEeCCCCeEEEEEeeC
Q 015463          225 ITKDTGRVLKYDPTT----KQTTVLLRNLQFPNGLSLSK-DKSFFVFCEGSVGRLHKYWLIG  281 (406)
Q Consensus       225 ~~~~~g~l~~~d~~t----~~~~~~~~~~~~~ngi~l~~-d~~~l~v~~t~~~~i~~~~~~g  281 (406)
                          +|.+..||..+    ++.............+++++ |++.++.+. ..+.|..|++..
T Consensus       226 ----d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~-~d~~i~iwd~~~  282 (383)
T 3ei3_B          226 ----DATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTD-QRNEIRVYSSYD  282 (383)
T ss_dssp             ----TSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEE-SSSEEEEEETTB
T ss_pred             ----CCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEc-CCCcEEEEECCC
Confidence                36788888876    44433333334557899999 998776654 457899998764

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=97.85  E-value=0.00074  Score=64.33  Aligned_cols=155  Identities=12%  Similarity=0.061  Sum_probs=92.5

Q ss_pred             cceEEEcCCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEe
Q 015463           71 PESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (406)
Q Consensus        71 pe~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad  149 (406)
                      ..++++.++|+.+.+++ ++++.+|+.. .........                   .........++|.+ ++..+++.
T Consensus       179 V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~v~~v~fsp-dg~~l~~~  237 (365)
T 4h5i_A          179 VKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTD-------------------FDKNWSLSKINFIA-DDTVLIAA  237 (365)
T ss_dssp             CCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECC-------------------CCTTEEEEEEEEEE-TTEEEEEE
T ss_pred             eEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeec-------------------CCCCCCEEEEEEcC-CCCEEEEE
Confidence            47899999999555555 5567777654 211111110                   00122356788998 66655443


Q ss_pred             -CCC----cEEEEeCCCCeEEEccc-ccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCC
Q 015463          150 -AYF----GLMKVGPEGGLATSLAT-EAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPI  223 (406)
Q Consensus       150 -~~~----gl~~~d~~~~~~~~l~~-~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  223 (406)
                       ..+    -+..++........... ...+ ....++++++.+||++.++.+.                           
T Consensus       238 s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~V~~~~~Spdg~~lasgs~---------------------------  289 (365)
T 4h5i_A          238 SLKKGKGIVLTKISIKSGNTSVLRSKQVTN-RFKGITSMDVDMKGELAVLASN---------------------------  289 (365)
T ss_dssp             EESSSCCEEEEEEEEETTEEEEEEEEEEES-SCSCEEEEEECTTSCEEEEEET---------------------------
T ss_pred             ecCCcceeEEeecccccceecceeeeeecC-CCCCeEeEEECCCCCceEEEcC---------------------------
Confidence             222    25566655444322111 1111 1234778999999988776532                           


Q ss_pred             cccCCCCeEEEEeCCCCeEEE-ecccCC-CcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          224 KITKDTGRVLKYDPTTKQTTV-LLRNLQ-FPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       224 ~~~~~~g~l~~~d~~t~~~~~-~~~~~~-~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                           ++.|..||.++++... +..+.. ....++++||++.| ++....+.|..+++.
T Consensus       290 -----D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~l-aS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          290 -----DNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYV-ASVSAANTIHIIKLP  342 (365)
T ss_dssp             -----TSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEE-EEEETTSEEEEEECC
T ss_pred             -----CCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEE-EEEeCCCeEEEEEcC
Confidence                 4779999999887543 444433 34789999999866 454556778777764

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=97.85  E-value=0.0024  Score=67.03  Aligned_cols=198  Identities=14%  Similarity=0.079  Sum_probs=114.6

Q ss_pred             cCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCC
Q 015463           65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT  142 (406)
Q Consensus        65 ~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~  142 (406)
                      .+.-....+++++++|+.+.+++.+|.|..|+..  .........                    ...+...++++.++.
T Consensus         6 ~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~--------------------~h~~~V~~l~~s~~~   65 (753)
T 3jro_A            6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT--------------------GHEGPVWRVDWAHPK   65 (753)
T ss_dssp             --CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEEC--------------------CCSSCEEEEEECCTT
T ss_pred             ccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceecc--------------------CCcCceEEEEecCCC
Confidence            3344455778888999988999999999999754  222221111                    112446788887631


Q ss_pred             -Cc-EEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCC--CCEEEEeCCCchhhhccccccccccccccCC
Q 015463          143 -GD-LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDE--GNVYFTDSSTNYQRRQMQKENIPLQLCSSLN  218 (406)
Q Consensus       143 -g~-L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~d--G~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~  218 (406)
                       ++ |..+...+.|..+|..+++........ + ....+.++++.++  |++.++.+.                      
T Consensus        66 ~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~-~-h~~~V~~v~~sp~~~~~~l~sgs~----------------------  121 (753)
T 3jro_A           66 FGTILASCSYDGKVLIWKEENGRWSQIAVHA-V-HSASVNSVQWAPHEYGPLLLVASS----------------------  121 (753)
T ss_dssp             SCSEEEEEETTSCEEEEEEETTEEEEEEEEC-C-CSSCEEEEEECCGGGCSEEEEEET----------------------
T ss_pred             CCCEEEEEeCCCeEEEEECCCCccccccccc-C-CCCCeEEEEECCCCCCCEEEEEeC----------------------
Confidence             54 555655566888898877533322211 1 1234778899888  877766432                      


Q ss_pred             CCCCCcccCCCCeEEEEeCCCCe---EEEecccCCCcceEEEec-------------CCCEEEEEeCCCCeEEEEEeeCC
Q 015463          219 DPSPIKITKDTGRVLKYDPTTKQ---TTVLLRNLQFPNGLSLSK-------------DKSFFVFCEGSVGRLHKYWLIGE  282 (406)
Q Consensus       219 ~~~~~~~~~~~g~l~~~d~~t~~---~~~~~~~~~~~ngi~l~~-------------d~~~l~v~~t~~~~i~~~~~~g~  282 (406)
                                +|.+..||..++.   ...+.........++++|             |++.++.+ ...+.|..+++...
T Consensus       122 ----------dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sg-s~dg~I~iwd~~~~  190 (753)
T 3jro_A          122 ----------DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG-GADNLVKIWKYNSD  190 (753)
T ss_dssp             ----------TSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEE-ETTSCEEEEEEETT
T ss_pred             ----------CCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEE-ECCCeEEEEeccCC
Confidence                      4778888887652   222222223446788888             46666554 44678888887643


Q ss_pred             CCcceeeeecCCC---CCCceEECCC---CCEEEEEccCCcc
Q 015463          283 KAGNLEAFAILPG---YPDNVRTNEK---GEFWVAIHCRRSL  318 (406)
Q Consensus       283 ~~~~~~~~~~l~g---~pd~i~~d~~---G~lwv~~~~~~~~  318 (406)
                      ... ......+.+   ....++++++   |++.++....+.+
T Consensus       191 ~~~-~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I  231 (753)
T 3jro_A          191 AQT-YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC  231 (753)
T ss_dssp             TTE-EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCE
T ss_pred             ccc-ceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEE
Confidence            211 112222222   2345677888   7766665544443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=97.84  E-value=0.0034  Score=60.57  Aligned_cols=167  Identities=8%  Similarity=0.032  Sum_probs=99.5

Q ss_pred             CcccCcceEEEcCCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC-
Q 015463           66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG-  143 (406)
Q Consensus        66 ~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g-  143 (406)
                      +.-....++++.++|+.+.++ .+|.|..|+.. .-..+........             ...........+++++ ++ 
T Consensus       175 ~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~-------------~~~~~~~~v~~~~~~p-~~~  239 (447)
T 3dw8_B          175 AHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPA-------------NMEELTEVITAAEFHP-NSC  239 (447)
T ss_dssp             CCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCS-------------SGGGCCCCEEEEEECS-SCT
T ss_pred             CCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccc-------------cccccCcceEEEEECC-CCC
Confidence            344456889999999977777 89999999976 2222211100000             0111134567899998 55 


Q ss_pred             c-EEEEeCCCcEEEEeCCCCeE-----EEcccccCCcc-------cccccceEEcCCCCEEEEeCCCchhhhcccccccc
Q 015463          144 D-LYIADAYFGLMKVGPEGGLA-----TSLATEAEGVP-------LRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIP  210 (406)
Q Consensus       144 ~-L~Vad~~~gl~~~d~~~~~~-----~~l~~~~~~~~-------~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~  210 (406)
                      + |..+...+.|..+|..+++.     ..+........       ...+.++++.++|.+.++.+               
T Consensus       240 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~---------------  304 (447)
T 3dw8_B          240 NTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD---------------  304 (447)
T ss_dssp             TEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE---------------
T ss_pred             cEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee---------------
Confidence            4 55555556689999887653     33221110000       01577899999998877642               


Q ss_pred             ccccccCCCCCCCcccCCCCeEEEEeCCC-CeEEEecccCCC----------------cceEEEecCCCEEEEEeCCCCe
Q 015463          211 LQLCSSLNDPSPIKITKDTGRVLKYDPTT-KQTTVLLRNLQF----------------PNGLSLSKDKSFFVFCEGSVGR  273 (406)
Q Consensus       211 ~~~~~e~~~~~~~~~~~~~g~l~~~d~~t-~~~~~~~~~~~~----------------~ngi~l~~d~~~l~v~~t~~~~  273 (406)
                                       . |.|..||..+ ++..........                ...+++++|++.+ ++....+.
T Consensus       305 -----------------~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l-~s~s~dg~  365 (447)
T 3dw8_B          305 -----------------Y-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVV-MTGSYNNF  365 (447)
T ss_dssp             -----------------S-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEE-EEECSTTE
T ss_pred             -----------------C-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEE-EEeccCCE
Confidence                             1 6788888875 432111111111                1128999999877 55566788


Q ss_pred             EEEEEeeC
Q 015463          274 LHKYWLIG  281 (406)
Q Consensus       274 i~~~~~~g  281 (406)
                      |..|++..
T Consensus       366 v~iwd~~~  373 (447)
T 3dw8_B          366 FRMFDRNT  373 (447)
T ss_dssp             EEEEETTT
T ss_pred             EEEEEcCC
Confidence            88888764

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=97.84  E-value=0.014  Score=53.56  Aligned_cols=182  Identities=9%  Similarity=-0.040  Sum_probs=105.2

Q ss_pred             cceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-EEEEe
Q 015463           71 PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYIAD  149 (406)
Q Consensus        71 pe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-L~Vad  149 (406)
                      ..++++.++++.+.+++.++.|..|+...-..+....                    ...+....+++.+ ++. |..+.
T Consensus        58 v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~--------------------~h~~~v~~~~~~~-~~~~l~sgs  116 (304)
T 2ynn_A           58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE--------------------AHPDYIRSIAVHP-TKPYVLSGS  116 (304)
T ss_dssp             EEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE--------------------CCSSCEEEEEECS-SSSEEEEEE
T ss_pred             EEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEe--------------------CCCCcEEEEEEcC-CCCEEEEEC
Confidence            3577888899989999999999999976211111110                    0123467899998 555 55555


Q ss_pred             CCCcEEEEeCCCCe-EEEcccccCCcccccccceEEcC-CCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463          150 AYFGLMKVGPEGGL-ATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK  227 (406)
Q Consensus       150 ~~~gl~~~d~~~~~-~~~l~~~~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  227 (406)
                      ..+.|..+|.+++. ......   + ....+.++++.+ ++.+.++.+.                               
T Consensus       117 ~D~~v~lWd~~~~~~~~~~~~---~-h~~~v~~v~~~p~~~~~l~sgs~-------------------------------  161 (304)
T 2ynn_A          117 DDLTVKLWNWENNWALEQTFE---G-HEHFVMCVAFNPKDPSTFASGCL-------------------------------  161 (304)
T ss_dssp             TTSCEEEEEGGGTTEEEEEEC---C-CCSCEEEEEECTTCTTEEEEEET-------------------------------
T ss_pred             CCCeEEEEECCCCcchhhhhc---c-cCCcEEEEEECCCCCCEEEEEeC-------------------------------
Confidence            55678888877652 222111   1 123467889987 5676666432                               


Q ss_pred             CCCeEEEEeCCCCeEE-Eeccc-CCCcceEEEec--CCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCC---ce
Q 015463          228 DTGRVLKYDPTTKQTT-VLLRN-LQFPNGLSLSK--DKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPD---NV  300 (406)
Q Consensus       228 ~~g~l~~~d~~t~~~~-~~~~~-~~~~ngi~l~~--d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd---~i  300 (406)
                       +|.+..||..++... .+..+ ....+.+++++  ++..+ ++....+.|..+++...     +....+.|...   .+
T Consensus       162 -D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~s~D~~i~iWd~~~~-----~~~~~~~~h~~~v~~~  234 (304)
T 2ynn_A          162 -DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYM-ITASDDLTIKIWDYQTK-----SCVATLEGHMSNVSFA  234 (304)
T ss_dssp             -TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEE-EEEETTSEEEEEETTTT-----EEEEEEECCSSCEEEE
T ss_pred             -CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEE-EEEcCCCeEEEEeCCCC-----ccceeeCCCCCCEEEE
Confidence             467888887654322 12211 12334566665  55555 44445678888876532     11222223222   35


Q ss_pred             EECCCCCEEEEEccC
Q 015463          301 RTNEKGEFWVAIHCR  315 (406)
Q Consensus       301 ~~d~~G~lwv~~~~~  315 (406)
                      ++.+++.+.++....
T Consensus       235 ~~~p~~~~l~s~s~D  249 (304)
T 2ynn_A          235 VFHPTLPIIISGSED  249 (304)
T ss_dssp             EECSSSSEEEEEETT
T ss_pred             EECCCCCEEEEEcCC
Confidence            677888866665443

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=97.83  E-value=0.019  Score=52.78  Aligned_cols=187  Identities=11%  Similarity=0.024  Sum_probs=106.2

Q ss_pred             ccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEE
Q 015463           68 IQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (406)
Q Consensus        68 ~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~V  147 (406)
                      -....++++.++|+.++++..++.|..++...........                    ........+.+.+.+..|..
T Consensus        86 ~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~l~s  145 (340)
T 4aow_A           86 SHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV--------------------GHTKDVLSVAFSSDNRQIVS  145 (340)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--------------------CCSSCEEEEEECTTSSCEEE
T ss_pred             CCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeec--------------------CCCCceeEEEEeecCcccee
Confidence            3456789999999989999999999999876211111111                    00122344556663344556


Q ss_pred             EeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCC--CEEEEeCCCchhhhccccccccccccccCCCCCCCcc
Q 015463          148 ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG--NVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKI  225 (406)
Q Consensus       148 ad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG--~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  225 (406)
                      +...+.+..+|..+.........  + ....+..+++..++  .+.++.+                              
T Consensus       146 ~s~d~~~~~~d~~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~~~~~s~~------------------------------  192 (340)
T 4aow_A          146 GSRDKTIKLWNTLGVCKYTVQDE--S-HSEWVSCVRFSPNSSNPIIVSCG------------------------------  192 (340)
T ss_dssp             EETTSCEEEECTTSCEEEEECSS--S-CSSCEEEEEECSCSSSCEEEEEE------------------------------
T ss_pred             ecCCCeEEEEEeCCCceEEEEec--c-ccCcccceEEccCCCCcEEEEEc------------------------------
Confidence            66556678888765543322111  1 11234555665543  4444432                              


Q ss_pred             cCCCCeEEEEeCCCCeEEEecccC-CCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECC
Q 015463          226 TKDTGRVLKYDPTTKQTTVLLRNL-QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNE  304 (406)
Q Consensus       226 ~~~~g~l~~~d~~t~~~~~~~~~~-~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~  304 (406)
                        .++.+..+|..+++......+. ...+.++++||++.++.+. ..+.|..+++...+  ....+ ........+...+
T Consensus       193 --~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~Dg~i~iwd~~~~~--~~~~~-~~~~~v~~~~~~~  266 (340)
T 4aow_A          193 --WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG-KDGQAMLWDLNEGK--HLYTL-DGGDIINALCFSP  266 (340)
T ss_dssp             --TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTCEEEEEETTTTE--EEEEE-ECSSCEEEEEECS
T ss_pred             --CCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEe-CCCeEEEEEeccCc--eeeee-cCCceEEeeecCC
Confidence              1366888998887765544332 2346889999998765554 45788888765321  11111 1112223455667


Q ss_pred             CCCEEEEEc
Q 015463          305 KGEFWVAIH  313 (406)
Q Consensus       305 ~G~lwv~~~  313 (406)
                      ++.+.++..
T Consensus       267 ~~~~~~~~~  275 (340)
T 4aow_A          267 NRYWLCAAT  275 (340)
T ss_dssp             SSSEEEEEE
T ss_pred             CCceeeccC
Confidence            776665554

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=97.82  E-value=0.0022  Score=66.44  Aligned_cols=212  Identities=8%  Similarity=-0.015  Sum_probs=105.5

Q ss_pred             CcceEEEcCCCCeeEEEecC---------CEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEE
Q 015463           70 GPESMAFDPLGRGPYTGVAD---------GRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRF  138 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~~---------g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~  138 (406)
                      ...++++++||+.+.++..+         +.|+.++.+  ..+.+....                    .....+..+++
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~--------------------~~~~~~~~~~~  121 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPE--------------------VSNAKLQYAGW  121 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTT--------------------CCSCCCSBCCB
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCc--------------------cccccccccEE
Confidence            37889999999966666543         677788765  222221100                    00122445678


Q ss_pred             eCCCCc-EEEEeCCCcEEEEeCCCCeEEEccccc-CCc-------------ccccccceEEcCCCC-EEEEeCCCchhhh
Q 015463          139 DKKTGD-LYIADAYFGLMKVGPEGGLATSLATEA-EGV-------------PLRFTNDLDIDDEGN-VYFTDSSTNYQRR  202 (406)
Q Consensus       139 d~~~g~-L~Vad~~~gl~~~d~~~~~~~~l~~~~-~~~-------------~~~~~~~l~~d~dG~-ly~t~~~~~~~~~  202 (406)
                      ++ +|+ |..+. .+.|+.++.++++...+.... .+.             .+..+.++++.+||+ |.++.... -..+
T Consensus       122 SP-dG~~la~~~-~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~-~~~~  198 (723)
T 1xfd_A          122 GP-KGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIND-SRVP  198 (723)
T ss_dssp             CS-STTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEEC-TTSC
T ss_pred             CC-CCCEEEEEE-CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECC-Cccc
Confidence            88 564 44443 468999999887665543221 110             011236789999996 44443110 0000


Q ss_pred             cccc---cc--c-cccccccCCCCCCCcccCCCCeEEEEeCCCCeE-EEeccc------CCCcceEEEecCCCEEEEEe-
Q 015463          203 QMQK---EN--I-PLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQT-TVLLRN------LQFPNGLSLSKDKSFFVFCE-  268 (406)
Q Consensus       203 ~~~~---~~--~-~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~-~~~~~~------~~~~ngi~l~~d~~~l~v~~-  268 (406)
                      .|..   .+  . ....+.- ...+.   ......|+.+|.++++. ..+...      ......++++||++.++... 
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~-~~~G~---~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~  274 (723)
T 1xfd_A          199 IMELPTYTGSIYPTVKPYHY-PKAGS---ENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLN  274 (723)
T ss_dssp             EEEECCCSSSSSCCCEEEEC-CBTTS---CCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEE
T ss_pred             eEEeeccCCcCCCcceeccC-CCCCC---CCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEc
Confidence            0000   00  0 0000000 00000   01123689999988874 443321      12234688999998764442 


Q ss_pred             CC--CCeEEEEEeeCCCCcceeeeec-CCCC----CCceEECCCCC-EEE
Q 015463          269 GS--VGRLHKYWLIGEKAGNLEAFAI-LPGY----PDNVRTNEKGE-FWV  310 (406)
Q Consensus       269 t~--~~~i~~~~~~g~~~~~~~~~~~-l~g~----pd~i~~d~~G~-lwv  310 (406)
                      ..  ...|+.+++.+.+.  ..++.. ..+.    +..+++++||+ |++
T Consensus       275 ~~~~~~~i~~~d~~~g~~--~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  322 (723)
T 1xfd_A          275 RAQNVSILTLCDATTGVC--TKKHEDESEAWLHRQNEEPVFSKDGRKFFF  322 (723)
T ss_dssp             TTSCEEEEEEEETTTCCE--EEEEEEECSSCCCCCCCCCEECTTSCSEEE
T ss_pred             CCCCeEEEEEEeCCCCcc--eEEEEeccCCEEeccCCCceEcCCCCeEEE
Confidence            21  24577777654321  112211 1222    23678889998 444

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=97.81  E-value=0.002  Score=62.52  Aligned_cols=193  Identities=12%  Similarity=0.020  Sum_probs=117.2

Q ss_pred             cCcceEEEcCCCC-eeEEEecCCEEEEEeCCc--e--eEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC
Q 015463           69 QGPESMAFDPLGR-GPYTGVADGRILFWDGLK--W--TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (406)
Q Consensus        69 ~gpe~i~~d~~g~-~ly~g~~~g~I~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g  143 (406)
                      ....++++.+++. .+.++..+|.|..|+...  .  ..+....                 ........+..+++.+.++
T Consensus       182 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-----------------~~~~h~~~v~~v~~~p~~~  244 (430)
T 2xyi_A          182 KEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN-----------------IFTGHTAVVEDVAWHLLHE  244 (430)
T ss_dssp             SCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSE-----------------EECCCSSCEEEEEECSSCT
T ss_pred             CCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccce-----------------eecCCCCCEeeeEEeCCCC
Confidence            3457899998877 789999999999998652  0  0000000                 0111134467899988455


Q ss_pred             cEEEE-eCCCcEEEEeCCCCe----EEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccC
Q 015463          144 DLYIA-DAYFGLMKVGPEGGL----ATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSL  217 (406)
Q Consensus       144 ~L~Va-d~~~gl~~~d~~~~~----~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~  217 (406)
                      +++++ ...+.|..+|..++.    ...+. .    ....++.+++.++|. ++++.+.                     
T Consensus       245 ~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~-~----~~~~v~~i~~~p~~~~~l~tg~~---------------------  298 (430)
T 2xyi_A          245 SLFGSVADDQKLMIWDTRNNNTSKPSHTVD-A----HTAEVNCLSFNPYSEFILATGSA---------------------  298 (430)
T ss_dssp             TEEEEEETTSEEEEEETTCSCSSSCSEEEE-C----CSSCEEEEEECSSCTTEEEEEET---------------------
T ss_pred             CEEEEEeCCCeEEEEECCCCCCCcceeEee-c----CCCCeEEEEeCCCCCCEEEEEeC---------------------
Confidence            66544 445668899987652    11111 1    123478899999885 6665432                     


Q ss_pred             CCCCCCcccCCCCeEEEEeCCCC-e-EEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCc---------c
Q 015463          218 NDPSPIKITKDTGRVLKYDPTTK-Q-TTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAG---------N  286 (406)
Q Consensus       218 ~~~~~~~~~~~~g~l~~~d~~t~-~-~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~---------~  286 (406)
                                 +|.|..||..+. + ...+.........++++|+++.++++....++|..+++......         .
T Consensus       299 -----------dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  367 (430)
T 2xyi_A          299 -----------DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP  367 (430)
T ss_dssp             -----------TSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCC
T ss_pred             -----------CCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCC
Confidence                       477888988762 2 33333233445689999999877777766788888887642110         0


Q ss_pred             eeeeecC---CCCCCceEECCCCC-EEEEEccC
Q 015463          287 LEAFAIL---PGYPDNVRTNEKGE-FWVAIHCR  315 (406)
Q Consensus       287 ~~~~~~l---~g~pd~i~~d~~G~-lwv~~~~~  315 (406)
                      .+.+...   .+.+..++.+++|. +.++....
T Consensus       368 ~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~d  400 (430)
T 2xyi_A          368 PELLFIHGGHTAKISDFSWNPNEPWIICSVSED  400 (430)
T ss_dssp             TTEEEECCCCSSCEEEEEECSSSTTEEEEEETT
T ss_pred             cceEEEcCCCCCCceEEEECCCCCCEEEEEECC
Confidence            1222222   22355678888888 66666544

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=97.81  E-value=0.002  Score=66.07  Aligned_cols=156  Identities=10%  Similarity=-0.076  Sum_probs=93.6

Q ss_pred             CcceEEEcCCCCeeEEEecC----------CEEEEEeCCc------eeEEEeecCCCccccCCCCCcccccccC-CcCCc
Q 015463           70 GPESMAFDPLGRGPYTGVAD----------GRILFWDGLK------WTDFAFTSNNRSELCNPKPIATSYLKNE-HICGR  132 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~~----------g~I~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  132 (406)
                      ...++++++||+.|++...+          ..|+.++.+.      -...                     ... .....
T Consensus       131 ~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---------------------~l~~~~~~~  189 (662)
T 3azo_A          131 RWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR---------------------ELSDDAHRF  189 (662)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE---------------------ESSCSCSSE
T ss_pred             cccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee---------------------EEEecCCCc
Confidence            34678899999977766654          4677777542      1100                     000 11123


Q ss_pred             ceEEEEeCCCCc-EEEEeCC--------CcEEEEeCC-CC---eEEEcccccCCcccccccceEEcCCCCEEEEeCCCch
Q 015463          133 PLGLRFDKKTGD-LYIADAY--------FGLMKVGPE-GG---LATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNY  199 (406)
Q Consensus       133 p~gi~~d~~~g~-L~Vad~~--------~gl~~~d~~-~~---~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~  199 (406)
                      ..++++++ +|+ |+++...        ..|+.+|.+ ++   +.+.+....    ...+..+++.+||++|++...   
T Consensus       190 ~~~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~----~~~~~~~~~spdg~l~~~~~~---  261 (662)
T 3azo_A          190 VTGPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP----EEAIAQAEWAPDGSLIVATDR---  261 (662)
T ss_dssp             ECCCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET----TBCEEEEEECTTSCEEEEECT---
T ss_pred             ccCceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC----CceEcceEECCCCeEEEEECC---
Confidence            44568888 564 5444422        259999988 46   444443221    123567788999998887642   


Q ss_pred             hhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCC---------cceEEEecCCCEEEEEeCC
Q 015463          200 QRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQF---------PNGLSLSKDKSFFVFCEGS  270 (406)
Q Consensus       200 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~---------~ngi~l~~d~~~l~v~~t~  270 (406)
                                                 .+...|+++|.++++.+.+......         ...+++++|++.++.+...
T Consensus       262 ---------------------------~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~  314 (662)
T 3azo_A          262 ---------------------------TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKG  314 (662)
T ss_dssp             ---------------------------TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSS
T ss_pred             ---------------------------CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcC
Confidence                                       1123799999988887766432111         2467888888866665443


Q ss_pred             CCeEEEEEeeC
Q 015463          271 VGRLHKYWLIG  281 (406)
Q Consensus       271 ~~~i~~~~~~g  281 (406)
                      ..+||++++++
T Consensus       315 ~~~l~~~d~~~  325 (662)
T 3azo_A          315 AAVLGILDPES  325 (662)
T ss_dssp             SCEEEEEETTT
T ss_pred             ccEEEEEECCC
Confidence            45677777653

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=97.81  E-value=0.004  Score=63.51  Aligned_cols=190  Identities=11%  Similarity=0.004  Sum_probs=108.2

Q ss_pred             CcceEEEcCCCCeeEEEecCCEEEEEeCC--c-eeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEE
Q 015463           70 GPESMAFDPLGRGPYTGVADGRILFWDGL--K-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~  146 (406)
                      .|.+++++|+|+.+.++. ++.|..++..  . ...+.                      .+ ......++|++ +|++.
T Consensus        20 ~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~----------------------~h-~~~v~~~~~sp-dg~~l   74 (611)
T 1nr0_A           20 TAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYT----------------------EH-SHQTTVAKTSP-SGYYC   74 (611)
T ss_dssp             CCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEEC----------------------CC-SSCEEEEEECT-TSSEE
T ss_pred             ceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEec----------------------CC-CCceEEEEECC-CCcEE
Confidence            577889999999666665 5688888864  1 11110                      11 23467899999 67644


Q ss_pred             -EEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcc
Q 015463          147 -IADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKI  225 (406)
Q Consensus       147 -Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  225 (406)
                       .++..+.|..+|..+++....... .+ ....+.++++++||...++.+..                            
T Consensus        75 asg~~d~~v~lWd~~~~~~~~~~~~-~~-~~~~v~~v~fs~dg~~l~~~~~~----------------------------  124 (611)
T 1nr0_A           75 ASGDVHGNVRIWDTTQTTHILKTTI-PV-FSGPVKDISWDSESKRIAAVGEG----------------------------  124 (611)
T ss_dssp             EEEETTSEEEEEESSSTTCCEEEEE-EC-SSSCEEEEEECTTSCEEEEEECC----------------------------
T ss_pred             EEEeCCCCEEEeECCCCcceeeEee-cc-cCCceEEEEECCCCCEEEEEECC----------------------------
Confidence             455556688888754321111000 01 01247889999999877665321                            


Q ss_pred             cCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCC---CCceEE
Q 015463          226 TKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGY---PDNVRT  302 (406)
Q Consensus       226 ~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~---pd~i~~  302 (406)
                      ....+.++.+|.. .....+.......+.++++|++...+++....+.|..++...   +  +....+.+.   ...+++
T Consensus       125 ~~~~~~v~~wd~~-~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~---~--~~~~~l~~H~~~V~~v~f  198 (611)
T 1nr0_A          125 RERFGHVFLFDTG-TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP---F--KFKSTFGEHTKFVHSVRY  198 (611)
T ss_dssp             SSCSEEEEETTTC-CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT---B--EEEEEECCCSSCEEEEEE
T ss_pred             CCceeEEEEeeCC-CCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCC---C--eEeeeeccccCceEEEEE
Confidence            0112456666642 122222222234568999999876556666667777777432   1  111122333   335678


Q ss_pred             CCCCCEEEEEccCCcchh
Q 015463          303 NEKGEFWVAIHCRRSLYS  320 (406)
Q Consensus       303 d~~G~lwv~~~~~~~~~~  320 (406)
                      +++|++.++......+..
T Consensus       199 spdg~~las~s~D~~i~l  216 (611)
T 1nr0_A          199 NPDGSLFASTGGDGTIVL  216 (611)
T ss_dssp             CTTSSEEEEEETTSCEEE
T ss_pred             CCCCCEEEEEECCCcEEE
Confidence            899998777655544433

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=97.79  E-value=0.0021  Score=60.44  Aligned_cols=158  Identities=8%  Similarity=0.028  Sum_probs=95.4

Q ss_pred             cccCcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc
Q 015463           67 QIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (406)
Q Consensus        67 ~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~  144 (406)
                      .-....++++.++|+.|.+++.++.|..|+..  ....+....                    ...+....+++.+ +++
T Consensus        60 h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~--------------------~h~~~v~~v~~sp-~~~  118 (345)
T 3fm0_A           60 HQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLE--------------------GHENEVKSVAWAP-SGN  118 (345)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEEC--------------------CCSSCEEEEEECT-TSS
T ss_pred             cCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEcc--------------------CCCCCceEEEEeC-CCC
Confidence            33445789999999989999999999888754  222221111                    1124467899998 565


Q ss_pred             E-EEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCC
Q 015463          145 L-YIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPI  223 (406)
Q Consensus       145 L-~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  223 (406)
                      + ..+...+.|..+|.+++..........+ ....+..+++.++|.+.++.+.                           
T Consensus       119 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~s~---------------------------  170 (345)
T 3fm0_A          119 LLATCSRDKSVWVWEVDEEDEYECVSVLNS-HTQDVKHVVWHPSQELLASASY---------------------------  170 (345)
T ss_dssp             EEEEEETTSCEEEEEECTTSCEEEEEEECC-CCSCEEEEEECSSSSCEEEEET---------------------------
T ss_pred             EEEEEECCCeEEEEECCCCCCeEEEEEecC-cCCCeEEEEECCCCCEEEEEeC---------------------------
Confidence            4 4555556688888765432111111111 1124678899999987666432                           


Q ss_pred             cccCCCCeEEEEeCCCCeEEE---ecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEe
Q 015463          224 KITKDTGRVLKYDPTTKQTTV---LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWL  279 (406)
Q Consensus       224 ~~~~~~g~l~~~d~~t~~~~~---~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~  279 (406)
                           ++.+..||..+++...   +.........++++||++.+..+. ..+.|..++.
T Consensus       171 -----d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s-~D~~v~iW~~  223 (345)
T 3fm0_A          171 -----DDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS-DDRTVRIWRQ  223 (345)
T ss_dssp             -----TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEEE
T ss_pred             -----CCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEe-CCCeEEEecc
Confidence                 3567777776665332   222223456899999998776554 3455655554

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=97.79  E-value=0.00073  Score=68.43  Aligned_cols=173  Identities=14%  Similarity=-0.008  Sum_probs=95.8

Q ss_pred             cceEEEcCCCCeeEEEe-cCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEE
Q 015463           71 PESMAFDPLGRGPYTGV-ADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (406)
Q Consensus        71 pe~i~~d~~g~~ly~g~-~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~V  147 (406)
                      ..++++.+||+.|.++. .+|.+..|+.+  ..+.+..                      +.......+++++ +..+|.
T Consensus        24 ~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~----------------------~~~~~~~~~~~sp-d~~l~~   80 (582)
T 3o4h_A           24 KYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNR----------------------EPINSVLDPHYGV-GRVILV   80 (582)
T ss_dssp             EEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCS----------------------SCCSEECEECTTC-SEEEEE
T ss_pred             hheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeec----------------------ccccccccccCCC-CeEEEE
Confidence            46788889998665544 47766555422  2222110                      0012344567777 444566


Q ss_pred             EeC---CC--cEEEEeC--CCCeEEEcccccCCcccccccceEEcCCC--CEEEEeCCCchhhhccccccccccccccCC
Q 015463          148 ADA---YF--GLMKVGP--EGGLATSLATEAEGVPLRFTNDLDIDDEG--NVYFTDSSTNYQRRQMQKENIPLQLCSSLN  218 (406)
Q Consensus       148 ad~---~~--gl~~~d~--~~~~~~~l~~~~~~~~~~~~~~l~~d~dG--~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~  218 (406)
                      ++.   ..  .|+.++.  +++.. .+... .+     ....++.+||  .+|++...                      
T Consensus        81 ~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~-~~-----~~~~~~s~dg~~~~~~s~~~----------------------  131 (582)
T 3o4h_A           81 RDVSKGAEQHALFKVNTSRPGEEQ-RLEAV-KP-----MRILSGVDTGEAVVFTGATE----------------------  131 (582)
T ss_dssp             EECSTTSCCEEEEEEETTSTTCCE-ECTTS-CS-----BEEEEEEECSSCEEEEEECS----------------------
T ss_pred             eccCCCCcceEEEEEeccCCCccc-cccCC-CC-----ceeeeeCCCCCeEEEEecCC----------------------
Confidence            654   12  5778887  65543 33221 11     1233444555  45554432                      


Q ss_pred             CCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCC---CCeEEEEEeeCCCCcceeeeecCCC
Q 015463          219 DPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS---VGRLHKYWLIGEKAGNLEAFAILPG  295 (406)
Q Consensus       219 ~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~---~~~i~~~~~~g~~~~~~~~~~~l~g  295 (406)
                                 +.+..||.++++.+.+.....  ..+++||||+.++.+...   ...|+++++.+.   ..+.+..-.+
T Consensus       132 -----------~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g---~~~~l~~~~~  195 (582)
T 3o4h_A          132 -----------DRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSG---GLRVFDSGEG  195 (582)
T ss_dssp             -----------SCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTC---CCEEECCSSC
T ss_pred             -----------CCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCC---CceEeecCCC
Confidence                       335577888888777654332  788999999998755432   146888887643   2233332233


Q ss_pred             CCCceEECCCCCEEEE
Q 015463          296 YPDNVRTNEKGEFWVA  311 (406)
Q Consensus       296 ~pd~i~~d~~G~lwv~  311 (406)
                      ....+++++||+..++
T Consensus       196 ~~~~~~~SpDG~~l~~  211 (582)
T 3o4h_A          196 SFSSASISPGMKVTAG  211 (582)
T ss_dssp             EEEEEEECTTSCEEEE
T ss_pred             ccccceECCCCCEEEE
Confidence            3356778899985543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=97.77  E-value=0.0023  Score=68.77  Aligned_cols=191  Identities=15%  Similarity=0.054  Sum_probs=118.1

Q ss_pred             cCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463           69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va  148 (406)
                      ....+++++++|+.+.+|+.+|.|..|+..........                    .+ ......++|.+ +..|..+
T Consensus        18 ~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~--------------------~~-~~~V~~l~fsp-g~~L~S~   75 (902)
T 2oaj_A           18 SKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL--------------------ED-RSAIKEMRFVK-GIYLVVI   75 (902)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC--------------------SS-CCCEEEEEEET-TTEEEEE
T ss_pred             CCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc--------------------CC-CCCEEEEEEcC-CCEEEEE
Confidence            45689999999998899999999999987632221111                    01 23357899998 4447777


Q ss_pred             eCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCC
Q 015463          149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKD  228 (406)
Q Consensus       149 d~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  228 (406)
                      ...+.|..+|.++++...-.. .    ...+..++++++|+..++.+.                                
T Consensus        76 s~D~~v~lWd~~~~~~~~~~~-~----~~~V~~v~~sp~g~~l~sgs~--------------------------------  118 (902)
T 2oaj_A           76 NAKDTVYVLSLYSQKVLTTVF-V----PGKITSIDTDASLDWMLIGLQ--------------------------------  118 (902)
T ss_dssp             ETTCEEEEEETTTCSEEEEEE-C----SSCEEEEECCTTCSEEEEEET--------------------------------
T ss_pred             ECcCeEEEEECCCCcEEEEEc-C----CCCEEEEEECCCCCEEEEEcC--------------------------------
Confidence            767789999998775432111 1    124678899999976665322                                


Q ss_pred             CCeEEEEeCCCCeEEEec-----------c-cCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee-c-CC
Q 015463          229 TGRVLKYDPTTKQTTVLL-----------R-NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-I-LP  294 (406)
Q Consensus       229 ~g~l~~~d~~t~~~~~~~-----------~-~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~-~-l~  294 (406)
                      +|.|..||.++++...+.           . .......++++|++...+++....+.| .+++...+.  ...+. . .+
T Consensus       119 dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~--~~~~~~~~~~  195 (902)
T 2oaj_A          119 NGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEI--KQSFIYELPP  195 (902)
T ss_dssp             TSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEE--EEEECCCBCT
T ss_pred             CCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCce--EEEEecccCC
Confidence            477999999887653221           1 112346899999754455555666777 877653211  11121 1 00


Q ss_pred             ----------------CCCCceEECCCCCEEEEEccCCcchhh
Q 015463          295 ----------------GYPDNVRTNEKGEFWVAIHCRRSLYSH  321 (406)
Q Consensus       295 ----------------g~pd~i~~d~~G~lwv~~~~~~~~~~~  321 (406)
                                      +....+++.++|.+.++....+.+..+
T Consensus       196 g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lW  238 (902)
T 2oaj_A          196 FAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFW  238 (902)
T ss_dssp             TCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred             cCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEE
Confidence                            112346778888877776555444443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=97.76  E-value=0.0026  Score=69.37  Aligned_cols=147  Identities=16%  Similarity=0.159  Sum_probs=92.0

Q ss_pred             cceEEEcCCCCeeEEEecCCEEE-EEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-EE
Q 015463           71 PESMAFDPLGRGPYTGVADGRIL-FWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LY  146 (406)
Q Consensus        71 pe~i~~d~~g~~ly~g~~~g~I~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-L~  146 (406)
                      ..++++. +|+.+++.+.+++|+ .++..  ....+.                       .....+..+++++ +|+ |+
T Consensus       340 ~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~-----------------------~~~~~~~~~~~Sp-DG~~la  394 (1045)
T 1k32_A          340 YVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFE-----------------------ENLGNVFAMGVDR-NGKFAV  394 (1045)
T ss_dssp             EEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECC-----------------------CCCCSEEEEEECT-TSSEEE
T ss_pred             EEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEec-----------------------CCccceeeeEECC-CCCEEE
Confidence            3456666 776566666667777 77755  222111                       1124467889999 555 66


Q ss_pred             EEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCc-hhhhccccccccccccccCCCCCCCcc
Q 015463          147 IADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTN-YQRRQMQKENIPLQLCSSLNDPSPIKI  225 (406)
Q Consensus       147 Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~-~~~~~~~~~~~~~~~~~e~~~~~~~~~  225 (406)
                      ++.....|+.+|.++++...+....    ...+.++++.+||+..+..+... +..              .         
T Consensus       395 ~~~~~~~v~~~d~~tg~~~~~~~~~----~~~v~~~~~SpDG~~la~~~~~~~~~~--------------~---------  447 (1045)
T 1k32_A          395 VANDRFEIMTVDLETGKPTVIERSR----EAMITDFTISDNSRFIAYGFPLKHGET--------------D---------  447 (1045)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECS----SSCCCCEEECTTSCEEEEEEEECSSTT--------------C---------
T ss_pred             EECCCCeEEEEECCCCceEEeccCC----CCCccceEECCCCCeEEEEecCccccc--------------c---------
Confidence            6666668999999988776554221    12356889999997554432100 000              0         


Q ss_pred             cCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeC
Q 015463          226 TKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEG  269 (406)
Q Consensus       226 ~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t  269 (406)
                      ....+.|+.+|.++++...+.........+++++|++.+++...
T Consensus       448 ~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~  491 (1045)
T 1k32_A          448 GYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSY  491 (1045)
T ss_dssp             SCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred             CCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEec
Confidence            01135799999998886666555555667899999998887754

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=97.74  E-value=0.00055  Score=63.77  Aligned_cols=154  Identities=12%  Similarity=0.034  Sum_probs=89.5

Q ss_pred             EEcCCCCeeEEEecCCEEEEEeCCcee-EEEeecCCCccccCCCCCcccccccCCcCCcceEEE----EeCCCCcEEEEe
Q 015463           75 AFDPLGRGPYTGVADGRILFWDGLKWT-DFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLR----FDKKTGDLYIAD  149 (406)
Q Consensus        75 ~~d~~g~~ly~g~~~g~I~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~----~d~~~g~L~Vad  149 (406)
                      ++.++++.++++..+|.|..|+..... ........                ..........++    +++++..|+++.
T Consensus       124 ~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~----------------~~~~~~~v~~~~~~~~~~~~~~~l~~~~  187 (357)
T 3i2n_A          124 GIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPV----------------QGENKRDCWTVAFGNAYNQEERVVCAGY  187 (357)
T ss_dssp             GCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCC----------------TTSCCCCEEEEEEECCCC-CCCEEEEEE
T ss_pred             ccCCCccEEEEEeCCCeEEEEeCCCCCCcceecccc----------------CCCCCCceEEEEEEeccCCCCCEEEEEc
Confidence            346788889999999999999876111 11111000                000012244555    456333455555


Q ss_pred             CCCcEEEEeCCCCeEEEcccccCCcccccccceEEcC---CCCEEEEeCCCchhhhccccccccccccccCCCCCCCccc
Q 015463          150 AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD---EGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKIT  226 (406)
Q Consensus       150 ~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~---dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~  226 (406)
                      ..+.|..+|.++++.......     ...+..+++.+   +|+..++.+.                              
T Consensus       188 ~d~~i~i~d~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~l~~~~~------------------------------  232 (357)
T 3i2n_A          188 DNGDIKLFDLRNMALRWETNI-----KNGVCSLEFDRKDISMNKLVATSL------------------------------  232 (357)
T ss_dssp             TTSEEEEEETTTTEEEEEEEC-----SSCEEEEEESCSSSSCCEEEEEES------------------------------
T ss_pred             cCCeEEEEECccCceeeecCC-----CCceEEEEcCCCCCCCCEEEEECC------------------------------
Confidence            556799999988875433211     12467889988   7776665432                              


Q ss_pred             CCCCeEEEEeCCCCeEE-Ee-----cccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463          227 KDTGRVLKYDPTTKQTT-VL-----LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  281 (406)
Q Consensus       227 ~~~g~l~~~d~~t~~~~-~~-----~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g  281 (406)
                        +|.+..||..+++.. .+     .........++++|+++.++++....+.|..+++..
T Consensus       233 --dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  291 (357)
T 3i2n_A          233 --EGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEY  291 (357)
T ss_dssp             --TTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred             --CCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence              367888877654311 01     122234567899999985556656667888888763

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=97.73  E-value=0.017  Score=54.80  Aligned_cols=200  Identities=12%  Similarity=0.089  Sum_probs=108.0

Q ss_pred             ccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC
Q 015463           64 FLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (406)
Q Consensus        64 ~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g  143 (406)
                      +.+.-....++++.++|+.+.+++.||.|..|+............                    .......+++++ +|
T Consensus        62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~--------------------h~~~v~~~~~s~-~g  120 (380)
T 3iz6_a           62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL--------------------HCPWVMECAFAP-NG  120 (380)
T ss_dssp             ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEEC--------------------CCTTCCCCEECT-TS
T ss_pred             ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEec--------------------CCCCEEEEEECC-CC
Confidence            344444567899999999899999999999999762111111100                    022345678998 66


Q ss_pred             cEEEEeC-CCcEEEEeCCCCeEEE----cccccCCcccccccceEEcCCC-CEEEEeCCCchhhhccccccccccccccC
Q 015463          144 DLYIADA-YFGLMKVGPEGGLATS----LATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRQMQKENIPLQLCSSL  217 (406)
Q Consensus       144 ~L~Vad~-~~gl~~~d~~~~~~~~----l~~~~~~~~~~~~~~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~~e~  217 (406)
                      ++.++.. .+.+..++..+.....    ......+- ...+..+.+.+++ ...++.+                      
T Consensus       121 ~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh-~~~v~~~~~~~~~~~~l~s~s----------------------  177 (380)
T 3iz6_a          121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGH-KGYASSCQYVPDQETRLITGS----------------------  177 (380)
T ss_dssp             SEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCC-SSCCCCCBCCSSSSSCEEEEC----------------------
T ss_pred             CEEEEeeCCCcEEEEECCCCccccCCccceeeccCC-CcceEEEEEecCCCCEEEEEC----------------------
Confidence            6554433 3557777765421100    00000110 1234455555543 3333332                      


Q ss_pred             CCCCCCcccCCCCeEEEEeCCCCeEEEecc-c-----CCCcceEEEec-CCCEEEEEeCCCCeEEEEEeeCCCCcceeee
Q 015463          218 NDPSPIKITKDTGRVLKYDPTTKQTTVLLR-N-----LQFPNGLSLSK-DKSFFVFCEGSVGRLHKYWLIGEKAGNLEAF  290 (406)
Q Consensus       218 ~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~-~-----~~~~ngi~l~~-d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~  290 (406)
                                .++.+..||..+++...... .     ......+++.+ +++ ++++....+.|..+++.... .....+
T Consensus       178 ----------~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~sgs~D~~v~~wd~~~~~-~~~~~~  245 (380)
T 3iz6_a          178 ----------GDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNAN-MFISGSCDTTVRLWDLRITS-RAVRTY  245 (380)
T ss_dssp             ----------TTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCC-EEEEEETTSCEEEEETTTTC-CCCEEE
T ss_pred             ----------CCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCC-EEEEEECCCeEEEEECCCCC-cceEEE
Confidence                      24778889988876543321 1     11224566655 555 44555556788888865211 111222


Q ss_pred             ecCCCCCCceEECCCCCEEEEEccCCcch
Q 015463          291 AILPGYPDNVRTNEKGEFWVAIHCRRSLY  319 (406)
Q Consensus       291 ~~l~g~pd~i~~d~~G~lwv~~~~~~~~~  319 (406)
                      ..-.+....+++.++|.+.++......+.
T Consensus       246 ~~h~~~v~~v~~~p~~~~l~s~s~D~~i~  274 (380)
T 3iz6_a          246 HGHEGDINSVKFFPDGQRFGTGSDDGTCR  274 (380)
T ss_dssp             CCCSSCCCEEEECTTSSEEEEECSSSCEE
T ss_pred             CCcCCCeEEEEEecCCCeEEEEcCCCeEE
Confidence            22223355678889998777765554443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=97.72  E-value=0.00097  Score=72.72  Aligned_cols=178  Identities=13%  Similarity=0.059  Sum_probs=110.2

Q ss_pred             CcceEEEc-CCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCC-cceEEEEeCCCCcE
Q 015463           70 GPESMAFD-PLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICG-RPLGLRFDKKTGDL  145 (406)
Q Consensus        70 gpe~i~~d-~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~gi~~d~~~g~L  145 (406)
                      .+.+++++ ++|+.+.++. ++.|+.++..  ....+.                       ...+ .+..+++. ++..|
T Consensus       297 ~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~s-dg~~l  351 (1045)
T 1k32_A          297 SKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVP-----------------------EPLRIRYVRRGGD-TKVAF  351 (1045)
T ss_dssp             GGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECS-----------------------CCSCEEEEEECSS-SEEEE
T ss_pred             ccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEcc-----------------------CCCcceEEeeeEc-CCCeE
Confidence            46889999 9998555554 7888888765  211110                       0012 34456666 34456


Q ss_pred             EEEeCCCcEE-EEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCc
Q 015463          146 YIADAYFGLM-KVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIK  224 (406)
Q Consensus       146 ~Vad~~~gl~-~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  224 (406)
                      +.+.....++ .++.++++.+.+. ..    ...+..+++.+||+..+..+.                            
T Consensus       352 ~~~s~~~~l~~~~d~~~~~~~~l~-~~----~~~~~~~~~SpDG~~la~~~~----------------------------  398 (1045)
T 1k32_A          352 IHGTREGDFLGIYDYRTGKAEKFE-EN----LGNVFAMGVDRNGKFAVVAND----------------------------  398 (1045)
T ss_dssp             EEEETTEEEEEEEETTTCCEEECC-CC----CCSEEEEEECTTSSEEEEEET----------------------------
T ss_pred             EEEECCCceEEEEECCCCCceEec-CC----ccceeeeEECCCCCEEEEECC----------------------------
Confidence            5555556788 8898888766554 11    134678899999975554321                            


Q ss_pred             ccCCCCeEEEEeCCCCeEEEecccCC-CcceEEEecCCCEEEEEeCCC---------CeEEEEEeeCCCCcceeeeecCC
Q 015463          225 ITKDTGRVLKYDPTTKQTTVLLRNLQ-FPNGLSLSKDKSFFVFCEGSV---------GRLHKYWLIGEKAGNLEAFAILP  294 (406)
Q Consensus       225 ~~~~~g~l~~~d~~t~~~~~~~~~~~-~~ngi~l~~d~~~l~v~~t~~---------~~i~~~~~~g~~~~~~~~~~~l~  294 (406)
                          .+.|+.+|.++++...+..... ....++++||++.+.++....         ..|+.+++.+.   ....+....
T Consensus       399 ----~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g---~~~~l~~~~  471 (1045)
T 1k32_A          399 ----RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR---KIFAATTEN  471 (1045)
T ss_dssp             ----TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT---EEEECSCSS
T ss_pred             ----CCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC---cEEEeeCCC
Confidence                2679999999998877663333 347899999999887665422         47888887642   222221111


Q ss_pred             CCCCceEECCCCC-EEEEE
Q 015463          295 GYPDNVRTNEKGE-FWVAI  312 (406)
Q Consensus       295 g~pd~i~~d~~G~-lwv~~  312 (406)
                      .....++++++|+ ++.+.
T Consensus       472 ~~~~~~~~spdG~~l~~~s  490 (1045)
T 1k32_A          472 SHDYAPAFDADSKNLYYLS  490 (1045)
T ss_dssp             SBEEEEEECTTSCEEEEEE
T ss_pred             cccCCceEcCCCCEEEEEe
Confidence            1123466788887 45444

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=97.71  E-value=0.005  Score=59.78  Aligned_cols=153  Identities=14%  Similarity=0.096  Sum_probs=92.3

Q ss_pred             CcceEEEcC-CCCeeEEEecCCEEEEEeCC-c-eeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcE-
Q 015463           70 GPESMAFDP-LGRGPYTGVADGRILFWDGL-K-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL-  145 (406)
Q Consensus        70 gpe~i~~d~-~g~~ly~g~~~g~I~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L-  145 (406)
                      ...++++.+ +++.|++++.||.|..||.. . ...+....                    ........+++++ ++.+ 
T Consensus       166 ~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~-~~~~l  224 (435)
T 4e54_B          166 SITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSD--------------------TINIWFCSLDVSA-SSRMV  224 (435)
T ss_dssp             CCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCS--------------------SCSCCCCCEEEET-TTTEE
T ss_pred             CEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccC--------------------CCCccEEEEEECC-CCCEE
Confidence            347889986 67889999999999999876 2 22221110                    0012234678888 5654 


Q ss_pred             EEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCCCCCCc
Q 015463          146 YIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIK  224 (406)
Q Consensus       146 ~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  224 (406)
                      .+++..+.|..+|.++..+..+...     ...++++++.+++. +.++.+.                            
T Consensus       225 ~~g~~dg~i~~wd~~~~~~~~~~~h-----~~~v~~v~~~p~~~~~~~s~s~----------------------------  271 (435)
T 4e54_B          225 VTGDNVGNVILLNMDGKELWNLRMH-----KKKVTHVALNPCCDWFLATASV----------------------------  271 (435)
T ss_dssp             EEECSSSBEEEEESSSCBCCCSBCC-----SSCEEEEEECTTCSSEEEEEET----------------------------
T ss_pred             EEEeCCCcEeeeccCcceeEEEecc-----cceEEeeeecCCCceEEEEecC----------------------------
Confidence            4555556688999876654332211     13467889998875 4444321                            


Q ss_pred             ccCCCCeEEEEeCCCCeEEE-ec--cc-CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463          225 ITKDTGRVLKYDPTTKQTTV-LL--RN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  281 (406)
Q Consensus       225 ~~~~~g~l~~~d~~t~~~~~-~~--~~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g  281 (406)
                          ++.|..||..+.+... +.  .+ ....+.+++++|++.++.+. ..+.|..|++..
T Consensus       272 ----d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~-~D~~i~iwd~~~  327 (435)
T 4e54_B          272 ----DQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD-QKSEIRVYSASQ  327 (435)
T ss_dssp             ----TSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE-SSSCEEEEESSS
T ss_pred             ----cceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc-CCCEEEEEECCC
Confidence                3556677766543211 11  11 12235678999998776554 457788888753

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.71  E-value=0.0023  Score=60.54  Aligned_cols=80  Identities=18%  Similarity=0.130  Sum_probs=49.0

Q ss_pred             CCeEEEEeCCCCeEEEecccCCCcceEEEec-CCCEEEEEeCCC-----CeEEEEEeeCCCCcceeeeec-CCC-CCCce
Q 015463          229 TGRVLKYDPTTKQTTVLLRNLQFPNGLSLSK-DKSFFVFCEGSV-----GRLHKYWLIGEKAGNLEAFAI-LPG-YPDNV  300 (406)
Q Consensus       229 ~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~-d~~~l~v~~t~~-----~~i~~~~~~g~~~~~~~~~~~-l~g-~pd~i  300 (406)
                      ...|+.+|.++++.+.+.........++++| |++.++++....     .+|+.+++++.+   ...+.. .++ .+..+
T Consensus       167 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~~~~~~~~~~~  243 (396)
T 3c5m_A          167 TCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN---VRKIKEHAEGESCTHE  243 (396)
T ss_dssp             CEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC---CEESSCCCTTEEEEEE
T ss_pred             cceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc---eeEeeccCCCccccce
Confidence            4679999999888777665444556788999 777665554322     479999876432   111211 001 12335


Q ss_pred             EECCCCC-EEEE
Q 015463          301 RTNEKGE-FWVA  311 (406)
Q Consensus       301 ~~d~~G~-lwv~  311 (406)
                      +++++|+ |+.+
T Consensus       244 ~~spdg~~l~~~  255 (396)
T 3c5m_A          244 FWIPDGSAMAYV  255 (396)
T ss_dssp             EECTTSSCEEEE
T ss_pred             EECCCCCEEEEE
Confidence            7788887 4444

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=97.70  E-value=0.015  Score=60.63  Aligned_cols=183  Identities=6%  Similarity=-0.026  Sum_probs=90.6

Q ss_pred             ceEEEcCCCCeeEEEecC---------CEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeC
Q 015463           72 ESMAFDPLGRGPYTGVAD---------GRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK  140 (406)
Q Consensus        72 e~i~~d~~g~~ly~g~~~---------g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~  140 (406)
                      .++.+++||+.+.+++.+         +.++.++..  +.+.+                       ....+.....+++|
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l-----------------------~~~~~~~~~~~~SP  121 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITE-----------------------ERIPNNTQWVTWSP  121 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-----------------------SCCCTTEEEEEECS
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEc-----------------------ccCCCcceeeEECC
Confidence            347889999977776654         455566654  11111                       01112345678898


Q ss_pred             CCCc-EEEEeCCCcEEEEeCCCCeEEEccccc-CCcc-------------cccccceEEcCCCC-EEEEeCCCchhhhcc
Q 015463          141 KTGD-LYIADAYFGLMKVGPEGGLATSLATEA-EGVP-------------LRFTNDLDIDDEGN-VYFTDSSTNYQRRQM  204 (406)
Q Consensus       141 ~~g~-L~Vad~~~gl~~~d~~~~~~~~l~~~~-~~~~-------------~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~  204 (406)
                       +|+ |..+ ..+.|+.++..++..+.+.... ....             +.....+...+||+ |.++.... ...+.|
T Consensus       122 -dG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~-~~v~~~  198 (740)
T 4a5s_A          122 -VGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFND-TEVPLI  198 (740)
T ss_dssp             -STTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEEC-TTCCEE
T ss_pred             -CCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcc-cCCceE
Confidence             565 4333 4567999998888766554221 1101             12234578899996 44442110 000000


Q ss_pred             c----cccc-ccccccc-C-CCCCCCcccCCCCeEEEEeCCC---C---eEEEecc------cCCCcceEEEecCCCEEE
Q 015463          205 Q----KENI-PLQLCSS-L-NDPSPIKITKDTGRVLKYDPTT---K---QTTVLLR------NLQFPNGLSLSKDKSFFV  265 (406)
Q Consensus       205 ~----~~~~-~~~~~~e-~-~~~~~~~~~~~~g~l~~~d~~t---~---~~~~~~~------~~~~~ngi~l~~d~~~l~  265 (406)
                      .    .... ......+ + .+.+   .......|+.+|.++   +   +...+..      .-.....++++||++.++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~yp~~G---~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~  275 (740)
T 4a5s_A          199 EYSFYSDESLQYPKTVRVPYPKAG---AVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISL  275 (740)
T ss_dssp             EEEECCSTTCSSCEEEEEECCBTT---SCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEE
T ss_pred             EEEeecCCCCCCCcceeecCCCCc---CcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEE
Confidence            0    0000 0000000 0 0000   001123689999988   7   5555432      122234678999998544


Q ss_pred             EE-eCCC--CeEEEEEeeCCC
Q 015463          266 FC-EGSV--GRLHKYWLIGEK  283 (406)
Q Consensus       266 v~-~t~~--~~i~~~~~~g~~  283 (406)
                      +. ....  ..|+.+++++.+
T Consensus       276 ~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          276 QWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             EEEESSTTEEEEEEEEEETTT
T ss_pred             EEeCCCCCEEEEEEEECCCCc
Confidence            33 2221  268888887543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=97.70  E-value=0.002  Score=66.87  Aligned_cols=100  Identities=10%  Similarity=-0.020  Sum_probs=58.2

Q ss_pred             cceEEEcCCCCeeEEEec---------CCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC
Q 015463           71 PESMAFDPLGRGPYTGVA---------DGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK  141 (406)
Q Consensus        71 pe~i~~d~~g~~ly~g~~---------~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~  141 (406)
                      ..++++++||+.+.+++.         ++.|+.++.+.-+...                     ..........+++++ 
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~---------------------~~~l~~~~~~~~~SP-  119 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVR---------------------GNELPRPIQYLCWSP-  119 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC---------------------SSCCCSSBCCEEECS-
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccc---------------------ceecCcccccceECC-
Confidence            678999999997666654         5778888765111100                     000012345678999 


Q ss_pred             CCcEEEEeCCCcEEEEeCCCCeEEEccccc-CCcc-------------cccccceEEcCCCCEEE
Q 015463          142 TGDLYIADAYFGLMKVGPEGGLATSLATEA-EGVP-------------LRFTNDLDIDDEGNVYF  192 (406)
Q Consensus       142 ~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~-~~~~-------------~~~~~~l~~d~dG~ly~  192 (406)
                      +|+..+....+.|+.++..+++...+.... ....             +.....++..+||+..+
T Consensus       120 DG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la  184 (719)
T 1z68_A          120 VGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLA  184 (719)
T ss_dssp             STTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEE
T ss_pred             CCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEE
Confidence            665333334568999999887765543211 0000             11225789999996443

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=97.70  E-value=0.0065  Score=56.48  Aligned_cols=164  Identities=9%  Similarity=-0.026  Sum_probs=103.9

Q ss_pred             eeccCcccCcceEEEcCC----CCeeEEEecCCEEEEEeCC---ceeEEEeecCCCccccCCCCCcccccccCCcCCcce
Q 015463           62 IKFLNQIQGPESMAFDPL----GRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPL  134 (406)
Q Consensus        62 ~~~~~~~~gpe~i~~d~~----g~~ly~g~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  134 (406)
                      .+.++.-....++++.++    ...++++..++.|..|+..   ....+.....                  ........
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~------------------~~~~~~v~   73 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVD------------------ADADENFY   73 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEEC------------------SCTTCCEE
T ss_pred             EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccc------------------cCCCCcEE
Confidence            444444455678888863    3457788888889888865   2222221110                  00124467


Q ss_pred             EEEEeCCC----Cc-EEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcC-CCCEEEEeCCCchhhhcccccc
Q 015463          135 GLRFDKKT----GD-LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKEN  208 (406)
Q Consensus       135 gi~~d~~~----g~-L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~  208 (406)
                      .+++.+ +    +. |+++...+.|..+|..+++........    ...+.++++.+ ++++.++.+.            
T Consensus        74 ~~~~~~-~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~l~s~~~------------  136 (366)
T 3k26_A           74 TCAWTY-DSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGH----GNAINELKFHPRDPNLLLSVSK------------  136 (366)
T ss_dssp             EEEEEE-CTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESC----CSCEEEEEECSSCTTEEEEEET------------
T ss_pred             EEEecc-CCCCCCCEEEEecCCCEEEEEEchhceEeeeecCC----CCcEEEEEECCCCCCEEEEEeC------------
Confidence            888887 4    33 556665567899998877543322211    23477889998 8887776432            


Q ss_pred             ccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec----ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463          209 IPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL----RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  281 (406)
Q Consensus       209 ~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~----~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g  281 (406)
                                          +|.|..||..+++.....    ........++++++++.++.+.. .+.|..+++..
T Consensus       137 --------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~  192 (366)
T 3k26_A          137 --------------------DHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGM-DHSLKLWRINS  192 (366)
T ss_dssp             --------------------TSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEET-TSCEEEEESCS
T ss_pred             --------------------CCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecC-CCCEEEEECCC
Confidence                                477999999888765543    22234568899999987766554 57888888763

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.70  E-value=0.001  Score=67.04  Aligned_cols=144  Identities=13%  Similarity=0.090  Sum_probs=94.2

Q ss_pred             cceEEEcCCCCeeEEEecCCEEEEEeCC-c-e-----eEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC
Q 015463           71 PESMAFDPLGRGPYTGVADGRILFWDGL-K-W-----TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (406)
Q Consensus        71 pe~i~~d~~g~~ly~g~~~g~I~~~~~~-~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g  143 (406)
                      -.+++++++|+.|++++.+|.|..|+.. + .     ..+......               ...+ .+....+++.+ +|
T Consensus       132 v~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~---------------~~gh-~~~V~sVawSP-dg  194 (588)
T 2j04_A          132 YHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLS---------------DAGS-KDWVTHIVWYE-DV  194 (588)
T ss_dssp             EEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECS---------------CTTC-CCCEEEEEEET-TE
T ss_pred             EEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecc---------------cccc-cccEEEEEEcC-Cc
Confidence            5689999999999999999999999976 2 1     011111000               0001 24578899999 77


Q ss_pred             cEEEEeCCCcEEEEeCCCCeEEEccccc-CCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCC
Q 015463          144 DLYIADAYFGLMKVGPEGGLATSLATEA-EGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSP  222 (406)
Q Consensus       144 ~L~Vad~~~gl~~~d~~~~~~~~l~~~~-~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  222 (406)
                       |..+..++.+..++.++++........ .+ ....+.++++.  |+..++.+                           
T Consensus       195 -Laass~D~tVrlWd~~~~~~~~~~~tL~~~-h~~~V~svaFs--g~~LASa~---------------------------  243 (588)
T 2j04_A          195 -LVAALSNNSVFSMTVSASSHQPVSRMIQNA-SRRKITDLKIV--DYKVVLTC---------------------------  243 (588)
T ss_dssp             -EEEEETTCCEEEECCCSSSSCCCEEEEECC-CSSCCCCEEEE--TTEEEEEC---------------------------
T ss_pred             -EEEEeCCCeEEEEECCCCccccceeeeccc-ccCcEEEEEEE--CCEEEEEe---------------------------
Confidence             777777788999999877632100000 11 11357788887  45555543                           


Q ss_pred             CcccCCCCeEEEEeCCCCeEEEec-ccCCCcceEEE--ecCCCEEEEEe
Q 015463          223 IKITKDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSL--SKDKSFFVFCE  268 (406)
Q Consensus       223 ~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~~ngi~l--~~d~~~l~v~~  268 (406)
                            .+.+..||.++++...+. ......+++++  ++|+..+.++.
T Consensus       244 ------~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~  286 (588)
T 2j04_A          244 ------PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSN  286 (588)
T ss_dssp             ------SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECS
T ss_pred             ------CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEc
Confidence                  268999999988875555 33344578999  99997666654

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=97.67  E-value=0.0021  Score=61.35  Aligned_cols=200  Identities=9%  Similarity=0.075  Sum_probs=114.9

Q ss_pred             cCcceEEEcCC-CCeeEEEecCCEEEEEeCCcee-------EEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeC
Q 015463           69 QGPESMAFDPL-GRGPYTGVADGRILFWDGLKWT-------DFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK  140 (406)
Q Consensus        69 ~gpe~i~~d~~-g~~ly~g~~~g~I~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~  140 (406)
                      ....++++.++ ++.++++..+|.|..|+.....       .+...                  ...........+++.+
T Consensus       114 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~------------------~~~~~~~~v~~~~~~~  175 (416)
T 2pm9_A          114 SSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPG------------------QSMSSVDEVISLAWNQ  175 (416)
T ss_dssp             SCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCC------------------CSCCSSCCCCEEEECS
T ss_pred             cceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccc------------------cccCCCCCeeEEEeCC
Confidence            34578999987 7878899999999999875111       11000                  0111234567899998


Q ss_pred             CCCcEEEE-eCCCcEEEEeCCCCeEEEcccccCC--cccccccceEEcCCC-CEEEEeCCCchhhhcccccccccccccc
Q 015463          141 KTGDLYIA-DAYFGLMKVGPEGGLATSLATEAEG--VPLRFTNDLDIDDEG-NVYFTDSSTNYQRRQMQKENIPLQLCSS  216 (406)
Q Consensus       141 ~~g~L~Va-d~~~gl~~~d~~~~~~~~l~~~~~~--~~~~~~~~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~~e  216 (406)
                      +++.++++ ...+.|..+|.++++..........  .....+.++++.++| .++++.+..                   
T Consensus       176 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------------------  236 (416)
T 2pm9_A          176 SLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGS-------------------  236 (416)
T ss_dssp             SCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECC-------------------
T ss_pred             CCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECC-------------------
Confidence            42565554 4445699999887754332211100  002357889999987 566554320                   


Q ss_pred             CCCCCCCcccCCCCeEEEEeCCCCe-EEEecc--cCCCcceEEEec-CCCEEEEEeCCCCeEEEEEeeCCCCcceeeeec
Q 015463          217 LNDPSPIKITKDTGRVLKYDPTTKQ-TTVLLR--NLQFPNGLSLSK-DKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI  292 (406)
Q Consensus       217 ~~~~~~~~~~~~~g~l~~~d~~t~~-~~~~~~--~~~~~ngi~l~~-d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~  292 (406)
                                ...+.|..||..++. ......  .......+++++ +++.++.+. ..+.|..+++...  .....+..
T Consensus       237 ----------~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~-~dg~v~~wd~~~~--~~~~~~~~  303 (416)
T 2pm9_A          237 ----------DNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSG-RDNTVLLWNPESA--EQLSQFPA  303 (416)
T ss_dssp             ----------SSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEE-SSSEEEEECSSSC--CEEEEEEC
T ss_pred             ----------CCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEe-CCCCEEEeeCCCC--ccceeecC
Confidence                      011268888887642 211122  223456789998 777665554 4678888886532  11112222


Q ss_pred             CCCCCCceEECCCC-CEEEEEccCCcc
Q 015463          293 LPGYPDNVRTNEKG-EFWVAIHCRRSL  318 (406)
Q Consensus       293 l~g~pd~i~~d~~G-~lwv~~~~~~~~  318 (406)
                      -.+....+++.++| .+.++....+.+
T Consensus       304 ~~~~v~~~~~s~~~~~~l~s~~~d~~i  330 (416)
T 2pm9_A          304 RGNWCFKTKFAPEAPDLFACASFDNKI  330 (416)
T ss_dssp             SSSCCCCEEECTTCTTEEEECCSSSEE
T ss_pred             CCCceEEEEECCCCCCEEEEEecCCcE
Confidence            23345678888888 666665544433

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.67  E-value=0.015  Score=60.30  Aligned_cols=157  Identities=14%  Similarity=0.069  Sum_probs=88.0

Q ss_pred             ceEEEcCCCCeeEEEe-cCC----EEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc
Q 015463           72 ESMAFDPLGRGPYTGV-ADG----RILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (406)
Q Consensus        72 e~i~~d~~g~~ly~g~-~~g----~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~  144 (406)
                      .++++++||+.+..+. .+|    .|+.++.+  +.......                       .....++++.+++..
T Consensus       128 ~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-----------------------~~~~~~~~wspDg~~  184 (710)
T 2xdw_A          128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-----------------------RVKFSCMAWTHDGKG  184 (710)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-----------------------EECSCCEEECTTSSE
T ss_pred             EEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-----------------------CcccceEEEEeCCCE
Confidence            4678999999654443 333    78888866  22221110                       011345788883345


Q ss_pred             EEEEeCCCc----------------EEEEeCCCCeEE--EcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccc
Q 015463          145 LYIADAYFG----------------LMKVGPEGGLAT--SLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQ  205 (406)
Q Consensus       145 L~Vad~~~g----------------l~~~d~~~~~~~--~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~  205 (406)
                      |+.+.....                |++++..+++.+  .+.... . ...+..++.+.+||+ |.++....        
T Consensus       185 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~-~-~~~~~~~~~~SpDg~~l~~~~~~~--------  254 (710)
T 2xdw_A          185 MFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFP-D-EPKWMGGAELSDDGRYVLLSIREG--------  254 (710)
T ss_dssp             EEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCT-T-CTTCEEEEEECTTSCEEEEEEECS--------
T ss_pred             EEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccC-C-CCeEEEEEEEcCCCCEEEEEEEcc--------
Confidence            666654433                899988776521  111111 0 012345778899996 44443210        


Q ss_pred             cccccccccccCCCCCCCcccCCCCeEEEEeCCC------C--eEEEecccCCCcceEEEecCCCEEEEEeCC---CCeE
Q 015463          206 KENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTT------K--QTTVLLRNLQFPNGLSLSKDKSFFVFCEGS---VGRL  274 (406)
Q Consensus       206 ~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t------~--~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~---~~~i  274 (406)
                                          ......|+.+|.++      +  ..+.+....... ...+++|++.+++....   ..+|
T Consensus       255 --------------------~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~~~~l  313 (710)
T 2xdw_A          255 --------------------CDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGE-YDYVTNEGTVFTFKTNRHSPNYRL  313 (710)
T ss_dssp             --------------------SSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSC-EEEEEEETTEEEEEECTTCTTCEE
T ss_pred             --------------------CCCccEEEEEECcccccccCCccceEEeeCCCCcE-EEEEeccCCEEEEEECCCCCCCEE
Confidence                                01135688888775      4  345554332222 23578899988887543   3479


Q ss_pred             EEEEeeCC
Q 015463          275 HKYWLIGE  282 (406)
Q Consensus       275 ~~~~~~g~  282 (406)
                      +++++++.
T Consensus       314 ~~~d~~~~  321 (710)
T 2xdw_A          314 INIDFTDP  321 (710)
T ss_dssp             EEEETTSC
T ss_pred             EEEeCCCC
Confidence            99987654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.66  E-value=0.0022  Score=64.67  Aligned_cols=72  Identities=7%  Similarity=-0.116  Sum_probs=52.8

Q ss_pred             ccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCe------------EE
Q 015463          177 RFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQ------------TT  243 (406)
Q Consensus       177 ~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~------------~~  243 (406)
                      ..|.++.+++||+ +|+++..                                ...+..||.++.+            ..
T Consensus       277 ~~PhGv~~sPDGk~v~V~~~~--------------------------------s~~VsVid~~~~~~~~~~~l~~~~~v~  324 (595)
T 1fwx_A          277 NNPHGCNMAPDKKHLCVAGKL--------------------------------SPTVTVLDVTRFDAVFYENADPRSAVV  324 (595)
T ss_dssp             SSCCCEEECTTSSEEEEECTT--------------------------------SSBEEEEEGGGHHHHHHSCCCGGGGEE
T ss_pred             CCceEEEEcCCCCEEEEeCCC--------------------------------CCeEEEEECcccccccccccCcccceE
Confidence            3688999999996 6666532                                3668888877542            22


Q ss_pred             EecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463          244 VLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  281 (406)
Q Consensus       244 ~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g  281 (406)
                      .-..--..|.++++++|| .+|++..-.+.|.+++++.
T Consensus       325 ~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          325 AEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             ECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred             EEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence            222333578899999999 8999988889999999764

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.64  E-value=0.0066  Score=57.24  Aligned_cols=134  Identities=16%  Similarity=0.248  Sum_probs=81.1

Q ss_pred             CcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCC----C----CEEEEeCCCchhhhccccccccccc
Q 015463          143 GDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDE----G----NVYFTDSSTNYQRRQMQKENIPLQL  213 (406)
Q Consensus       143 g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~d----G----~ly~t~~~~~~~~~~~~~~~~~~~~  213 (406)
                      ..++|++.. .||+.||.++..+..+..       ..+|.+.+-++    |    .+++++..                 
T Consensus        40 ~s~ii~t~k~~gL~Vydl~G~~l~~~~~-------g~~nnVD~r~~~~l~g~~~dla~as~R~-----------------   95 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSLDGKMLHSYNT-------GKLNNVDIRYDFPLNGKKVDIAAASNRS-----------------   95 (355)
T ss_dssp             GCEEEEEETTTEEEEEETTSCEEEEECC-------SCEEEEEEEEEEEETTEEEEEEEEEECS-----------------
T ss_pred             ccEEEEEcCCCCEEEEcCCCcEEEEccC-------CCcccEEEecccccCCceEeEEEEeCCC-----------------
Confidence            345666544 689999997776665421       23555555431    2    13444421                 


Q ss_pred             cccCCCCCCCcccCCCCe--EEEEeCCCCeEEEec-------ccCCCcceEEE--ecC-CC-EEEEEeCCCCeEEEEEee
Q 015463          214 CSSLNDPSPIKITKDTGR--VLKYDPTTKQTTVLL-------RNLQFPNGLSL--SKD-KS-FFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       214 ~~e~~~~~~~~~~~~~g~--l~~~d~~t~~~~~~~-------~~~~~~ngi~l--~~d-~~-~l~v~~t~~~~i~~~~~~  280 (406)
                                   .+.++  ++.+||++++++.+.       ..+..+.|+|+  +++ ++ ++|++.. .+++..|.+.
T Consensus        96 -------------~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k-~G~~~q~~l~  161 (355)
T 3amr_A           96 -------------EGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK-EGEFEQYELK  161 (355)
T ss_dssp             -------------TTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECS-SSEEEEEEEE
T ss_pred             -------------CCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECC-CCeEEEEEEE
Confidence                         00244  455598888877663       33477899999  554 43 4666654 4789998876


Q ss_pred             CCCCc--ceeeee--cCCCCCCceEECC-CCCEEEEEcc
Q 015463          281 GEKAG--NLEAFA--ILPGYPDNVRTNE-KGEFWVAIHC  314 (406)
Q Consensus       281 g~~~~--~~~~~~--~l~g~pd~i~~d~-~G~lwv~~~~  314 (406)
                      ....+  ..+...  .+++-|.+++.|+ .|.||++...
T Consensus       162 ~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd  200 (355)
T 3amr_A          162 ADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEED  200 (355)
T ss_dssp             ECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETT
T ss_pred             eCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEeccc
Confidence            32222  122222  3667788999985 5789999864

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=97.62  E-value=0.013  Score=53.96  Aligned_cols=189  Identities=14%  Similarity=0.143  Sum_probs=108.7

Q ss_pred             CcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCC-CcEEEE
Q 015463           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT-GDLYIA  148 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~-g~L~Va  148 (406)
                      ......+.++++.++++..++.+..++...........                   .........+++.++. ..+.++
T Consensus       130 ~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~-------------------~~~~~~v~~~~~~~~~~~~~~~s  190 (340)
T 4aow_A          130 DVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD-------------------ESHSEWVSCVRFSPNSSNPIIVS  190 (340)
T ss_dssp             CEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS-------------------SSCSSCEEEEEECSCSSSCEEEE
T ss_pred             ceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEe-------------------ccccCcccceEEccCCCCcEEEE
Confidence            34455666777778889999999888866222211110                   0011234456665522 234433


Q ss_pred             -eCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463          149 -DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK  227 (406)
Q Consensus       149 -d~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  227 (406)
                       .....|..+|..+++........    ...++++++.++|++.++.+.                               
T Consensus       191 ~~~d~~i~i~d~~~~~~~~~~~~h----~~~v~~~~~s~~~~~l~s~s~-------------------------------  235 (340)
T 4aow_A          191 CGWDKLVKVWNLANCKLKTNHIGH----TGYLNTVTVSPDGSLCASGGK-------------------------------  235 (340)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCC----SSCEEEEEECTTSSEEEEEET-------------------------------
T ss_pred             EcCCCEEEEEECCCCceeeEecCC----CCcEEEEEECCCCCEEEEEeC-------------------------------
Confidence             33456888898877654322111    134678999999988776532                               


Q ss_pred             CCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcc---eee-eecCCCCC---Cce
Q 015463          228 DTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGN---LEA-FAILPGYP---DNV  300 (406)
Q Consensus       228 ~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~---~~~-~~~l~g~p---d~i  300 (406)
                       +|.+..||..+.+.............+++++++..+..+.  .+.|..+++.+...-.   .+. .....+.+   ..+
T Consensus       236 -Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  312 (340)
T 4aow_A          236 -DGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAAT--GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSL  312 (340)
T ss_dssp             -TCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEE--TTEEEEEETTTTEEEEEECCC-------CCCCCEEEE
T ss_pred             -CCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccC--CCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEE
Confidence             4789999998876655444445567788998887554443  4678888776421100   000 00112223   346


Q ss_pred             EECCCCCEEEEEccC
Q 015463          301 RTNEKGEFWVAIHCR  315 (406)
Q Consensus       301 ~~d~~G~lwv~~~~~  315 (406)
                      +++++|++.++....
T Consensus       313 ~~s~dg~~l~sgs~D  327 (340)
T 4aow_A          313 AWSADGQTLFAGYTD  327 (340)
T ss_dssp             EECTTSSEEEEEETT
T ss_pred             EECCCCCEEEEEeCC
Confidence            778999877665443

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=97.62  E-value=0.012  Score=56.68  Aligned_cols=164  Identities=11%  Similarity=0.149  Sum_probs=95.2

Q ss_pred             cCcccCcceEEEcC-CCCeeEEEecCCEEEEEeCCc---eeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeC
Q 015463           65 LNQIQGPESMAFDP-LGRGPYTGVADGRILFWDGLK---WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK  140 (406)
Q Consensus        65 ~~~~~gpe~i~~d~-~g~~ly~g~~~g~I~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~  140 (406)
                      ++.-....++++.+ +|+.+.+++.+|.|..|+...   -..+.         |.        .... ..+....+++.+
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~---------~~--------~~~~-h~~~v~~~~~~~  121 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYS---------SS--------LTYD-CSSTVTQITMIP  121 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCS---------CS--------EEEE-CSSCEEEEEECT
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccc---------ee--------eecc-CCCCEEEEEEeC
Confidence            33334568899999 999899999999999998541   00000         00        0001 134567899998


Q ss_pred             CCCc-EEEEeCCCcEEEEeCC---CCeEEEccccc--CCc------ccccccceE--EcCCCCEEEEeCCCchhhhcccc
Q 015463          141 KTGD-LYIADAYFGLMKVGPE---GGLATSLATEA--EGV------PLRFTNDLD--IDDEGNVYFTDSSTNYQRRQMQK  206 (406)
Q Consensus       141 ~~g~-L~Vad~~~gl~~~d~~---~~~~~~l~~~~--~~~------~~~~~~~l~--~d~dG~ly~t~~~~~~~~~~~~~  206 (406)
                       +++ |..+...+.|..+|.+   +++........  ...      ....+..+.  ..++|.+.++.+           
T Consensus       122 -~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------  189 (437)
T 3gre_A          122 -NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALT-----------  189 (437)
T ss_dssp             -TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEE-----------
T ss_pred             -CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEe-----------
Confidence             554 5666655667777663   23222111100  000      011222333  345665555532           


Q ss_pred             ccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEeccc---CCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          207 ENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRN---LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       207 ~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~---~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                                           .+|.|..||..+++.......   ......++++++++.++.+. ..+.|..+++.
T Consensus       190 ---------------------~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~  244 (437)
T 3gre_A          190 ---------------------NLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGT-TRGIIDIWDIR  244 (437)
T ss_dssp             ---------------------TTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEE-TTSCEEEEETT
T ss_pred             ---------------------CCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEc-CCCeEEEEEcC
Confidence                                 247899999988776544332   24557899999998776554 45778888875

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=97.59  E-value=0.0064  Score=62.90  Aligned_cols=152  Identities=9%  Similarity=0.017  Sum_probs=81.8

Q ss_pred             ceEEEEeCCCCcEEEEeCC-----CcEEEEeCCCCeEEEccccc-CCcccccccceEEcCCCC-EEEE-eCCCchhhhcc
Q 015463          133 PLGLRFDKKTGDLYIADAY-----FGLMKVGPEGGLATSLATEA-EGVPLRFTNDLDIDDEGN-VYFT-DSSTNYQRRQM  204 (406)
Q Consensus       133 p~gi~~d~~~g~L~Vad~~-----~gl~~~d~~~~~~~~l~~~~-~~~~~~~~~~l~~d~dG~-ly~t-~~~~~~~~~~~  204 (406)
                      ...+++.+ +|++++....     ..|+.+|.++++...+.... .+........+++.+||+ |++. ....+.     
T Consensus       257 ~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~-----  330 (723)
T 1xfd_A          257 ITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGG-----  330 (723)
T ss_dssp             EEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSS-----
T ss_pred             eEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCC-----
Confidence            45688999 7876543321     24888999888765543221 111000123678999996 5554 311000     


Q ss_pred             ccccccccccccCCCCCCCcccCCCCeEEEEe-CCCCe---EEEecccCCCc-ceEEEecCCCEEEEEeCCC----CeEE
Q 015463          205 QKENIPLQLCSSLNDPSPIKITKDTGRVLKYD-PTTKQ---TTVLLRNLQFP-NGLSLSKDKSFFVFCEGSV----GRLH  275 (406)
Q Consensus       205 ~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d-~~t~~---~~~~~~~~~~~-ngi~l~~d~~~l~v~~t~~----~~i~  275 (406)
                                           ......|+.+| ..+++   .+.+..+.... ..+++++|++.++++....    .+||
T Consensus       331 ---------------------~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~  389 (723)
T 1xfd_A          331 ---------------------RGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLY  389 (723)
T ss_dssp             ---------------------SSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEE
T ss_pred             ---------------------CcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEE
Confidence                                 00123689998 45555   44444322222 2368999999998776542    3566


Q ss_pred             EEEeeCCCCcceeeeec-C--CCCCCceEECCCCCEEEEEc
Q 015463          276 KYWLIGEKAGNLEAFAI-L--PGYPDNVRTNEKGEFWVAIH  313 (406)
Q Consensus       276 ~~~~~g~~~~~~~~~~~-l--~g~pd~i~~d~~G~lwv~~~  313 (406)
                      .++..+..  ....+.. +  .+....+.++++|+.++...
T Consensus       390 ~~~~~~~~--~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~  428 (723)
T 1xfd_A          390 SANTVGNF--NRQCLSCDLVENCTYFSASFSHSMDFFLLKC  428 (723)
T ss_dssp             EECSSTTC--CCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred             EEeCCCCC--CcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence            66554321  1111211 1  12244677889998666543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=97.58  E-value=0.0029  Score=58.62  Aligned_cols=105  Identities=14%  Similarity=-0.010  Sum_probs=63.3

Q ss_pred             cCcceEEEcCCCCeeEEEecCCEEEEEeCC-c-eeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC-CC-c
Q 015463           69 QGPESMAFDPLGRGPYTGVADGRILFWDGL-K-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK-TG-D  144 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~-~g-~  144 (406)
                      ....+++++++|+.|.+++.|+.|..|+.. . ...+....                    ...+....+++.+. ++ .
T Consensus        14 ~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~--------------------gH~~~V~~v~~~~~~~~~~   73 (316)
T 3bg1_A           14 DMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLR--------------------GHEGPVWQVAWAHPMYGNI   73 (316)
T ss_dssp             CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEE--------------------CCSSCEEEEEECCGGGSSC
T ss_pred             CeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEc--------------------CCCccEEEEEeCCCCCCCE
Confidence            344688999999989999999999998854 2 11111111                    01234667888641 24 4


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCC--CCEEEEeC
Q 015463          145 LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDE--GNVYFTDS  195 (406)
Q Consensus       145 L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~d--G~ly~t~~  195 (406)
                      |..+...+.|..+|.++++....... .+ ....++++++.++  |.+.++.+
T Consensus        74 l~s~s~D~~v~iWd~~~~~~~~~~~~-~~-h~~~V~~v~~~p~~~g~~lasgs  124 (316)
T 3bg1_A           74 LASCSYDRKVIIWREENGTWEKSHEH-AG-HDSSVNSVCWAPHDYGLILACGS  124 (316)
T ss_dssp             EEEEETTSCEEEECCSSSCCCEEEEE-CC-CSSCCCEEEECCTTTCSCEEEEC
T ss_pred             EEEEECCCEEEEEECCCCcceEEEEc-cC-CCCceEEEEECCCCCCcEEEEEc
Confidence            55666667788999887632211111 11 1135778899886  66666543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.55  E-value=0.026  Score=52.37  Aligned_cols=150  Identities=9%  Similarity=-0.004  Sum_probs=86.5

Q ss_pred             cCcceEEEcCCCCeeEEEecC---C--EEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC
Q 015463           69 QGPESMAFDPLGRGPYTGVAD---G--RILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK  141 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~~---g--~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~  141 (406)
                      ....+++++|+|+.+++...+   +  .|+.++.+  ..+.+...                       .. ..++++.++
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-----------------------~~-~~~~~wspd  114 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-----------------------KN-IRSLEWNED  114 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-----------------------SE-EEEEEECTT
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-----------------------CC-ccceeECCC
Confidence            345678999999855544332   2  47888765  22222111                       12 456778873


Q ss_pred             CCcEEEEeC---------------------------CCcEEEEeCCCCeE-EEcccccCCcccccccceEEcCCCCEEEE
Q 015463          142 TGDLYIADA---------------------------YFGLMKVGPEGGLA-TSLATEAEGVPLRFTNDLDIDDEGNVYFT  193 (406)
Q Consensus       142 ~g~L~Vad~---------------------------~~gl~~~d~~~~~~-~~l~~~~~~~~~~~~~~l~~d~dG~ly~t  193 (406)
                      +..|+++..                           ...|++++.++++. +.+..     +  .+..+++.+|| ++++
T Consensus       115 g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-----~--~~~~~~~spdg-~~~~  186 (347)
T 2gop_A          115 SRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-----P--RFSSGIWHRDK-IVVN  186 (347)
T ss_dssp             SSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-----E--TTCEEEEETTE-EEEE
T ss_pred             CCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-----C--CcccccCCCCe-EEEE
Confidence            334555532                           13589999988876 54432     1  45678889999 7766


Q ss_pred             eCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCC---
Q 015463          194 DSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS---  270 (406)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~---  270 (406)
                      .....-  ...                     ..+...|+.+|  +++.+.+... ...  ..++||++.+++....   
T Consensus       187 ~~~~~~--~~~---------------------~~~~~~l~~~d--~~~~~~l~~~-~~~--~~~spdg~~l~~~~~~~~~  238 (347)
T 2gop_A          187 VPHREI--IPQ---------------------YFKFWDIYIWE--DGKEEKMFEK-VSF--YAVDSDGERILLYGKPEKK  238 (347)
T ss_dssp             EECCCS--SCC---------------------SSCCEEEEEEE--TTEEEEEEEE-ESE--EEEEECSSCEEEEECCSSS
T ss_pred             Eecccc--ccc---------------------ccccccEEEeC--CCceEEeccC-cce--eeECCCCCEEEEEEccccC
Confidence            421000  000                     00134699999  6777666544 222  2348999988776533   


Q ss_pred             ----CCeEEEEE
Q 015463          271 ----VGRLHKYW  278 (406)
Q Consensus       271 ----~~~i~~~~  278 (406)
                          ..+|+.++
T Consensus       239 ~~~~~~~l~~~d  250 (347)
T 2gop_A          239 YMSEHNKLYIYD  250 (347)
T ss_dssp             CCCSSCEEEEEC
T ss_pred             CccccceEEEEC
Confidence                24788877

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.53  E-value=0.0031  Score=55.35  Aligned_cols=119  Identities=15%  Similarity=0.043  Sum_probs=73.6

Q ss_pred             cccccceeccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCC-cCCc
Q 015463           56 LLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEH-ICGR  132 (406)
Q Consensus        56 ~l~~~~~~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  132 (406)
                      =+.++.++-..+.....+++++++|. ||.- .+|.++++++.  .-..+.... .               .+.. .-+.
T Consensus        28 ~~~~a~~iG~~gw~~~~~laf~P~G~-LYaV-~~G~Ly~~~~~t~~~~~W~~s~-t---------------~IG~~Gw~~   89 (236)
T 1tl2_A           28 WLARATLIGKGGWSNFKFLFLSPGGE-LYGV-LNDKIYKGTPPTHDNDNWMGRA-K---------------KIGNGGWNQ   89 (236)
T ss_dssp             HHHHSEEEESSSCTTCSEEEECTTSC-EEEE-ETTEEEEESCCCSTTCCHHHHC-E---------------EEECSCGGG
T ss_pred             hhhhccccCccccccceeEEECCCcc-EEEE-eCCeEEEECCCCCCcccccccc-c---------------Eeccccccc
Confidence            35677777776678888999999998 8887 88999999863  100000000 0               0000 0011


Q ss_pred             ceEEEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccc---cCCcccccccceEEcCCCCEEEEe
Q 015463          133 PLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATE---AEGVPLRFTNDLDIDDEGNVYFTD  194 (406)
Q Consensus       133 p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~---~~~~~~~~~~~l~~d~dG~ly~t~  194 (406)
                      =..+.||+ +|.||+.+ ...|+|+++.+..-......   +...-......|.++++|.||..+
T Consensus        90 F~a~~fD~-~G~LYav~-dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~  152 (236)
T 1tl2_A           90 FQFLFFDP-NGYLYAVS-KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH  152 (236)
T ss_dssp             CSEEEECT-TSCEEEEE-TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred             ceEEEECC-CCCEEEeC-CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence            24688998 99999994 46799999843211111111   001112345778999999999987

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=97.53  E-value=0.00054  Score=69.41  Aligned_cols=118  Identities=14%  Similarity=0.171  Sum_probs=79.2

Q ss_pred             CCcceEEEEeCCCCcEEEEeCC----------------------CcEEEEeCCCCe-------EEEcccc----------
Q 015463          130 CGRPLGLRFDKKTGDLYIADAY----------------------FGLMKVGPEGGL-------ATSLATE----------  170 (406)
Q Consensus       130 ~~~p~gi~~d~~~g~L~Vad~~----------------------~gl~~~d~~~~~-------~~~l~~~----------  170 (406)
                      ..||-++.+++.++.+|++...                      +.|++++++++.       ...+...          
T Consensus       383 f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~~  462 (592)
T 3zwu_A          383 MDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTP  462 (592)
T ss_dssp             EECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSG
T ss_pred             EeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCcccccccc
Confidence            5789999999878999998653                      248898765432       1111100          


Q ss_pred             -------cCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEE
Q 015463          171 -------AEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTT  243 (406)
Q Consensus       171 -------~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~  243 (406)
                             .....+..|..|++|++|+|||++.+.......+                    .......++.+++.++++.
T Consensus       463 ~~~~~~~~~~~~f~~PDNL~fd~~G~LwI~eDg~~~~~~~~--------------------~~~gnn~~~~~~~~~g~~~  522 (592)
T 3zwu_A          463 KGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDF--------------------AGMGNNQMLCADPATGEIR  522 (592)
T ss_dssp             GGCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGG--------------------TTTCSCEEEEECTTTCCEE
T ss_pred             cccccccCCCCCccCCcceEECCCCCEEEEecCCCcccccc--------------------cccccceEEEEeCCCCeEE
Confidence                   0112466889999999999999975421111111                    0223467999999999998


Q ss_pred             EecccC--CCcceEEEecCCCEEEEE
Q 015463          244 VLLRNL--QFPNGLSLSKDKSFFVFC  267 (406)
Q Consensus       244 ~~~~~~--~~~ngi~l~~d~~~l~v~  267 (406)
                      .++..-  ....|++++||++++|+.
T Consensus       523 rf~~~P~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          523 RFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             EEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             EEEeCCCCccCcCeeECCCCCEEEEE
Confidence            887543  334699999999998875

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.50  E-value=0.02  Score=53.89  Aligned_cols=64  Identities=9%  Similarity=0.082  Sum_probs=39.0

Q ss_pred             CCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee--cCCC---CCCceEE--CCCCC-EEEEEcc
Q 015463          250 QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA--ILPG---YPDNVRT--NEKGE-FWVAIHC  314 (406)
Q Consensus       250 ~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~--~l~g---~pd~i~~--d~~G~-lwv~~~~  314 (406)
                      ..+.|+++++....||+++.. ..||+|+.+.....+.+++.  ...+   -+.|+++  .++|+ ++++...
T Consensus       180 sq~EgcvvDd~~g~Lyv~eEd-~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQ  251 (355)
T 3amr_A          180 SQTEGMAADDEYGRLYIAEED-EAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQ  251 (355)
T ss_dssp             SCEEEEEEETTTTEEEEEETT-TEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEG
T ss_pred             CCcceEEEcCCCCeEEEeccc-ceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcC
Confidence            467799999989999999986 66999996632211222222  1222   2457776  45555 4444443

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=97.50  E-value=0.0077  Score=63.16  Aligned_cols=194  Identities=11%  Similarity=0.052  Sum_probs=108.7

Q ss_pred             cCcceEEEcCC--CCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC--C
Q 015463           69 QGPESMAFDPL--GRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK--T  142 (406)
Q Consensus        69 ~gpe~i~~d~~--g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~--~  142 (406)
                      ....++++.++  |+.+.+++.+|.|..|+..  .+.......                    ........+++.++  .
T Consensus        54 ~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~--------------------~h~~~V~~v~~sp~~~~  113 (753)
T 3jro_A           54 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHA--------------------VHSASVNSVQWAPHEYG  113 (753)
T ss_dssp             SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEEC--------------------CCSSCEEEEEECCGGGC
T ss_pred             CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccccccccc--------------------CCCCCeEEEEECCCCCC
Confidence            34567888776  8889999999999999865  222222111                    11244678899883  2


Q ss_pred             CcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcC-------------CCCEEEEeCCCchhhhccccccc
Q 015463          143 GDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-------------EGNVYFTDSSTNYQRRQMQKENI  209 (406)
Q Consensus       143 g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~-------------dG~ly~t~~~~~~~~~~~~~~~~  209 (406)
                      ..++++...+.|..+|..++........ .+ ....+..+++.+             +|.+.++.+              
T Consensus       114 ~~l~sgs~dg~I~vwdl~~~~~~~~~~~-~~-~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs--------------  177 (753)
T 3jro_A          114 PLLLVASSDGKVSVVEFKENGTTSPIII-DA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG--------------  177 (753)
T ss_dssp             SEEEEEETTSEEEEEECCSSSCCCCEEE-EC-CSSCEEEEEECCCC---------CGGGCCEEEEE--------------
T ss_pred             CEEEEEeCCCcEEEEEeecCCCcceeEe-ec-CCCceEEEEecCcccccccccccCCCCCEEEEEE--------------
Confidence            3456666556788888876521111100 01 112456677776             355444432              


Q ss_pred             cccccccCCCCCCCcccCCCCeEEEEeCCCCe----EEE-ecccCCCcceEEEecC---CCEEEEEeCCCCeEEEEEeeC
Q 015463          210 PLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQ----TTV-LLRNLQFPNGLSLSKD---KSFFVFCEGSVGRLHKYWLIG  281 (406)
Q Consensus       210 ~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~----~~~-~~~~~~~~ngi~l~~d---~~~l~v~~t~~~~i~~~~~~g  281 (406)
                                        .+|.|..||..++.    ... +...-.....++++|+   ++.+ ++....+.|..+++..
T Consensus       178 ------------------~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l-~s~s~Dg~I~iwd~~~  238 (753)
T 3jro_A          178 ------------------ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYL-ASVSQDRTCIIWTQDN  238 (753)
T ss_dssp             ------------------TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEE-EEEESSSCEEEEEESS
T ss_pred             ------------------CCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEE-EEEecCCEEEEecCCC
Confidence                              24678888766552    111 1122234568999999   6655 4444567888888764


Q ss_pred             CCCcceeeeec---CCCCCCceEECCCCCEEEEEccCCc
Q 015463          282 EKAGNLEAFAI---LPGYPDNVRTNEKGEFWVAIHCRRS  317 (406)
Q Consensus       282 ~~~~~~~~~~~---l~g~pd~i~~d~~G~lwv~~~~~~~  317 (406)
                      ...........   ..+....++++++|.+.++....+.
T Consensus       239 ~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~  277 (753)
T 3jro_A          239 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK  277 (753)
T ss_dssp             SSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSC
T ss_pred             CCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCE
Confidence            32111111111   2233456788888886655444333

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.48  E-value=0.053  Score=50.24  Aligned_cols=155  Identities=10%  Similarity=0.028  Sum_probs=89.8

Q ss_pred             CcceEEEcCCCCeeEEEecCCEEEEEeCCc-------eeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCC
Q 015463           70 GPESMAFDPLGRGPYTGVADGRILFWDGLK-------WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT  142 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~  142 (406)
                      ...++++.++|+.+.+++.++.|..|+...       ......                    .....+....+++++ +
T Consensus        60 ~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~--------------------~~~h~~~V~~v~~sp-~  118 (330)
T 2hes_X           60 AIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAI--------------------IEGHENEVKGVAWSN-D  118 (330)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEE--------------------EC----CEEEEEECT-T
T ss_pred             CEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEE--------------------EcCCCCcEEEEEECC-C
Confidence            457899999999888999999999998641       011110                    011124467899998 5


Q ss_pred             CcE-EEEeCCCcEEEEeCC-CCe-EEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCC
Q 015463          143 GDL-YIADAYFGLMKVGPE-GGL-ATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLND  219 (406)
Q Consensus       143 g~L-~Vad~~~gl~~~d~~-~~~-~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~  219 (406)
                      |++ ..+...+.|..+|.. ++. .+.+.. ..+ ....++++++.++|.+.++.+.                       
T Consensus       119 g~~las~s~D~~v~iwd~~~~~~~~~~~~~-~~~-h~~~v~~v~~~p~~~~l~s~s~-----------------------  173 (330)
T 2hes_X          119 GYYLATCSRDKSVWIWETDESGEEYECISV-LQE-HSQDVKHVIWHPSEALLASSSY-----------------------  173 (330)
T ss_dssp             SCEEEEEETTSCEEEEECCTTCCCCEEEEE-ECC-CSSCEEEEEECSSSSEEEEEET-----------------------
T ss_pred             CCEEEEEeCCCEEEEEeccCCCCCeEEEEE-ecc-CCCceEEEEECCCCCEEEEEcC-----------------------
Confidence            654 445555668888873 221 111111 111 1134778899999988777542                       


Q ss_pred             CCCCcccCCCCeEEEEeCCCCeEE---EecccCCCcceEEEecC--CCEEEEEeCCCCeEEEEEee
Q 015463          220 PSPIKITKDTGRVLKYDPTTKQTT---VLLRNLQFPNGLSLSKD--KSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       220 ~~~~~~~~~~g~l~~~d~~t~~~~---~~~~~~~~~ngi~l~~d--~~~l~v~~t~~~~i~~~~~~  280 (406)
                               ++.+..+|..++..+   .+.........++++++  +..+ ++....+.|..+++.
T Consensus       174 ---------D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~D~~v~iw~~~  229 (330)
T 2hes_X          174 ---------DDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRL-CSGSDDSTVRVWKYM  229 (330)
T ss_dssp             ---------TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEE-EEEETTSCEEEEEEE
T ss_pred             ---------CCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEE-EEEeCCCeEEEEEec
Confidence                     356777776555322   22222233467889988  4334 444445667666665

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=97.47  E-value=0.03  Score=52.74  Aligned_cols=155  Identities=11%  Similarity=0.036  Sum_probs=92.3

Q ss_pred             cCcceEEEcC-CCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC--CC-c
Q 015463           69 QGPESMAFDP-LGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK--TG-D  144 (406)
Q Consensus        69 ~gpe~i~~d~-~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~--~g-~  144 (406)
                      ....++++.+ +++.+++++.+|.|..|+...........                     .......+.+.+.  ++ .
T Consensus       100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~  158 (408)
T 4a11_B          100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN---------------------FEETVYSHHMSPVSTKHCL  158 (408)
T ss_dssp             SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE---------------------CSSCEEEEEECSSCSSCCE
T ss_pred             CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc---------------------CCCceeeeEeecCCCCCcE
Confidence            3457888888 67778889999999999976222111110                     0122345556542  12 4


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCCCCCC
Q 015463          145 LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPI  223 (406)
Q Consensus       145 L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  223 (406)
                      ++++...+.|..+|..+++.......    ....+.++++.++|. ++++.+.                           
T Consensus       159 ~~~~~~~~~v~~~d~~~~~~~~~~~~----~~~~v~~~~~~~~~~~ll~~~~~---------------------------  207 (408)
T 4a11_B          159 VAVGTRGPKVQLCDLKSGSCSHILQG----HRQEILAVSWSPRYDYILATASA---------------------------  207 (408)
T ss_dssp             EEEEESSSSEEEEESSSSCCCEEECC----CCSCEEEEEECSSCTTEEEEEET---------------------------
T ss_pred             EEEEcCCCeEEEEeCCCcceeeeecC----CCCcEEEEEECCCCCcEEEEEcC---------------------------
Confidence            66666667799999876643221111    122467889999886 5554322                           


Q ss_pred             cccCCCCeEEEEeCCCCe--EEEe---------------cccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463          224 KITKDTGRVLKYDPTTKQ--TTVL---------------LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  281 (406)
Q Consensus       224 ~~~~~~g~l~~~d~~t~~--~~~~---------------~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g  281 (406)
                           +|.+..||..++.  ...+               .........+++++|++.++.+.. .+.|..+++..
T Consensus       208 -----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~  276 (408)
T 4a11_B          208 -----DSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT-DNRMRLWNSSN  276 (408)
T ss_dssp             -----TSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTT
T ss_pred             -----CCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC-CCeEEEEECCC
Confidence                 3667778776543  1111               011122457889999987766654 57788888764

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=97.46  E-value=0.0012  Score=66.03  Aligned_cols=125  Identities=18%  Similarity=0.312  Sum_probs=77.6

Q ss_pred             eccCcccCcceEEEcC-CCCeeEEEecC----------------------CEEEEEeCC---------ceeEEEeecCCC
Q 015463           63 KFLNQIQGPESMAFDP-LGRGPYTGVAD----------------------GRILFWDGL---------KWTDFAFTSNNR  110 (406)
Q Consensus        63 ~~~~~~~gpe~i~~d~-~g~~ly~g~~~----------------------g~I~~~~~~---------~~~~~~~~~~~~  110 (406)
                      +-...+..||.+++++ +|. +|+...+                      |.|++|..+         .|..+...+...
T Consensus       378 vGAT~mdRpEdi~v~p~~g~-vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~  456 (592)
T 4a9v_A          378 VGATRMDRPEWIVVSPKDGQ-VYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPS  456 (592)
T ss_dssp             TTCCCEECEEEEEECTTTCC-EEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTT
T ss_pred             cCCccccCccceeEcCCCCE-EEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCc
Confidence            3345678899999997 455 7776422                      889999753         244444322110


Q ss_pred             ccccCCCCCccc--ccccCCcCCcceEEEEeCCCCcEEEEeCC-------------CcEEEEeCCCCeEEEcccccCCcc
Q 015463          111 SELCNPKPIATS--YLKNEHICGRPLGLRFDKKTGDLYIADAY-------------FGLMKVGPEGGLATSLATEAEGVP  175 (406)
Q Consensus       111 ~~~~~~~~~~~~--~~~~~~~~~~p~gi~~d~~~g~L~Vad~~-------------~gl~~~d~~~~~~~~l~~~~~~~~  175 (406)
                      ..  .. .....  ........+.|.+|+|++ +|+|||++..             ++++++++++++++.+....   .
T Consensus       457 ~~--~~-~~~~g~~~~~~~~~fnsPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P---~  529 (592)
T 4a9v_A          457 VH--AG-TPKGGSSNITPQNMFNSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP---I  529 (592)
T ss_dssp             TS--TT-SGGGCCTTCCTTTCCCCEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECC---T
T ss_pred             cc--cc-ccccCccCccccCccCCCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCC---C
Confidence            00  00 00000  000112357799999999 8999994422             26999999989888776432   2


Q ss_pred             cccccceEEcCCC-CEEEEeC
Q 015463          176 LRFTNDLDIDDEG-NVYFTDS  195 (406)
Q Consensus       176 ~~~~~~l~~d~dG-~ly~t~~  195 (406)
                      ...++++++.+|+ .||++..
T Consensus       530 ~aEpnGiafSPD~ktLfV~vQ  550 (592)
T 4a9v_A          530 GCEVTGISFSPDQKTLFVGIQ  550 (592)
T ss_dssp             TCEEEEEEECTTSSEEEEEEE
T ss_pred             CccccCCEECCCCCEEEEEEe
Confidence            3458999999998 5777753

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=97.44  E-value=0.017  Score=55.58  Aligned_cols=217  Identities=11%  Similarity=0.026  Sum_probs=115.9

Q ss_pred             CcccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcc---------------------ccCCCCCccccc
Q 015463           66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSE---------------------LCNPKPIATSYL  124 (406)
Q Consensus        66 ~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~  124 (406)
                      +.-....++++.++|+.+.+|+.+|.|..|+....+.+.........                     ............
T Consensus       145 ~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~  224 (420)
T 4gga_A          145 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVA  224 (420)
T ss_dssp             STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeE
Confidence            34456789999999999999999999999987611111110000000                     000000000000


Q ss_pred             ccCCcCCcceEEEEeCCCCc-EEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCC-CEEEEeCCCchhhh
Q 015463          125 KNEHICGRPLGLRFDKKTGD-LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRR  202 (406)
Q Consensus       125 ~~~~~~~~p~gi~~d~~~g~-L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG-~ly~t~~~~~~~~~  202 (406)
                      ..........++.+.+ +++ +..+...+.+..++..+++...............+..++..+++ ++.++..       
T Consensus       225 ~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~-------  296 (420)
T 4gga_A          225 TLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-------  296 (420)
T ss_dssp             EEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEE-------
T ss_pred             EecccccceeeeeecC-CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEe-------
Confidence            0011123345666666 444 44444445566777655432110000000011234566666654 4444321       


Q ss_pred             ccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeC-CCCeEEEEEeeC
Q 015463          203 QMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEG-SVGRLHKYWLIG  281 (406)
Q Consensus       203 ~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t-~~~~i~~~~~~g  281 (406)
                                             +..++.|..||..+++.............++++++++.++.+.. ..+.|..++...
T Consensus       297 -----------------------gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~  353 (420)
T 4gga_A          297 -----------------------GTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT  353 (420)
T ss_dssp             -----------------------CTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT
T ss_pred             -----------------------ecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCC
Confidence                                   22357789999998887665555556667889999988876642 346788887642


Q ss_pred             CCCcceeeeecCCCCCC---ceEECCCCCEEEEEccCCcc
Q 015463          282 EKAGNLEAFAILPGYPD---NVRTNEKGEFWVAIHCRRSL  318 (406)
Q Consensus       282 ~~~~~~~~~~~l~g~pd---~i~~d~~G~lwv~~~~~~~~  318 (406)
                           .+.+..+.|..+   .++++++|.+.++......+
T Consensus       354 -----~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tv  388 (420)
T 4gga_A          354 -----MAKVAELKGHTSRVLSLTMSPDGATVASAAADETL  388 (420)
T ss_dssp             -----CCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEE
T ss_pred             -----CcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeE
Confidence                 122333344333   46788999877766554443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.42  E-value=0.081  Score=53.53  Aligned_cols=42  Identities=21%  Similarity=0.259  Sum_probs=27.4

Q ss_pred             ceEEEEEECC-CCCEEEEEECCCCCeeeceeEEEEeCCEEEEecC
Q 015463          352 LHAMAVKYSP-EGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSV  395 (406)
Q Consensus       352 ~~~~v~~~d~-~g~~~~~~~~~~g~~~~~~s~~~~~~g~Ly~Gs~  395 (406)
                      ..+.+.++|. +|+.+..+....+...  ...+...+|++|++..
T Consensus       483 ~dg~l~a~D~~tG~~lw~~~~~~~~~~--~p~~~~~~G~~yv~~~  525 (571)
T 2ad6_A          483 LDGYLKALDNKDGKELWNFKMPSGGIG--SPMTYSFKGKQYIGSM  525 (571)
T ss_dssp             TTSEEEEEETTTCCEEEEEECSSCCCS--CCEEEEETTEEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCCcEe--eeEEEEECCEEEEEEE
Confidence            3456788884 5899988876544321  1122357999999875

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=97.40  E-value=0.1  Score=50.02  Aligned_cols=81  Identities=5%  Similarity=-0.100  Sum_probs=40.3

Q ss_pred             CCeEEEEeCCCCeE-----EEecccCCCcceEEEecCCCEEEEEe--CCCCeEEEEEeeCCCCcceeeeecCCCCCCceE
Q 015463          229 TGRVLKYDPTTKQT-----TVLLRNLQFPNGLSLSKDKSFFVFCE--GSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVR  301 (406)
Q Consensus       229 ~g~l~~~d~~t~~~-----~~~~~~~~~~ngi~l~~d~~~l~v~~--t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~  301 (406)
                      +|.+..++..+++.     ............+++++++..++.+.  +..+.|..+++..   +..............+.
T Consensus       251 D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t---~~~~~~~~~~~~v~~~~  327 (420)
T 4gga_A          251 DNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS---GACLSAVDAHSQVCSIL  327 (420)
T ss_dssp             TSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT---TEEEEEEECSSCEEEEE
T ss_pred             cccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc---cccceeeccccceeeee
Confidence            36677777765542     11222222335678888776665543  2345677777643   22111111222233455


Q ss_pred             ECCCCCEEEEE
Q 015463          302 TNEKGEFWVAI  312 (406)
Q Consensus       302 ~d~~G~lwv~~  312 (406)
                      ..++++..++.
T Consensus       328 ~~~~~~~lv~~  338 (420)
T 4gga_A          328 WSPHYKELISG  338 (420)
T ss_dssp             EETTTTEEEEE
T ss_pred             ecCCCCeEEEE
Confidence            56677755544

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=97.39  E-value=0.042  Score=50.06  Aligned_cols=186  Identities=10%  Similarity=0.060  Sum_probs=99.9

Q ss_pred             cceEEEcC--CCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCC-Cc-
Q 015463           71 PESMAFDP--LGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT-GD-  144 (406)
Q Consensus        71 pe~i~~d~--~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~-g~-  144 (406)
                      ..++++.+  +|+.+.+++.||.|..|+..  .+......                    .........+++.++. +. 
T Consensus        56 V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~--------------------~~h~~~v~~v~~~p~~~g~~  115 (297)
T 2pm7_B           56 VWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVH--------------------AVHSASVNSVQWAPHEYGPM  115 (297)
T ss_dssp             EEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEE--------------------CCCSSCEEEEEECCGGGCSE
T ss_pred             eEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEe--------------------ecCCCceeEEEeCcCCCCcE
Confidence            46777764  47878899999999999865  11111110                    0012335678888731 44 


Q ss_pred             EEEEeCCCcEEEEeCCCCeE---EEcccccCCcccccccceEEcCC-------------CCEEEEeCCCchhhhcccccc
Q 015463          145 LYIADAYFGLMKVGPEGGLA---TSLATEAEGVPLRFTNDLDIDDE-------------GNVYFTDSSTNYQRRQMQKEN  208 (406)
Q Consensus       145 L~Vad~~~gl~~~d~~~~~~---~~l~~~~~~~~~~~~~~l~~d~d-------------G~ly~t~~~~~~~~~~~~~~~  208 (406)
                      |..+...+.|..+|.+++..   ..+.    + ....++.+++.++             ++++++.+             
T Consensus       116 l~s~s~d~~v~~wd~~~~~~~~~~~~~----~-h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs-------------  177 (297)
T 2pm7_B          116 LLVASSDGKVSVVEFKENGTTSPIIID----A-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-------------  177 (297)
T ss_dssp             EEEEETTSEEEEEEBCSSSCBCCEEEE----C-CSSCEEEEEECCCC------------CCEEEEEE-------------
T ss_pred             EEEEECCCcEEEEEecCCCceeeeeee----c-ccCccceEeecCCcccccccCCCCCCcceEEEEc-------------
Confidence            55566556678888765421   1111    0 0123556666665             33444432             


Q ss_pred             ccccccccCCCCCCCcccCCCCeEEEEeCCCCe----EE-EecccCCCcceEEEecCC--CEEEEEeCCCCeEEEEEeeC
Q 015463          209 IPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQ----TT-VLLRNLQFPNGLSLSKDK--SFFVFCEGSVGRLHKYWLIG  281 (406)
Q Consensus       209 ~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~----~~-~~~~~~~~~ngi~l~~d~--~~l~v~~t~~~~i~~~~~~g  281 (406)
                                         .++.|..+|..+++    .. .+...-...+.++++|++  ..++++....+.|..+++..
T Consensus       178 -------------------~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~  238 (297)
T 2pm7_B          178 -------------------ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN  238 (297)
T ss_dssp             -------------------TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             -------------------CCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence                               24667777765543    21 222222345789999985  34556655567787777764


Q ss_pred             CCCcc-eeeeecCCCCC---CceEECCCCCEEEEEcc
Q 015463          282 EKAGN-LEAFAILPGYP---DNVRTNEKGEFWVAIHC  314 (406)
Q Consensus       282 ~~~~~-~~~~~~l~g~p---d~i~~d~~G~lwv~~~~  314 (406)
                      ..... ...+ ...+++   ..++++++|++.++...
T Consensus       239 ~~~~~~~~~~-~~~~~~~~v~~~~~s~~g~~las~~~  274 (297)
T 2pm7_B          239 EQGPWKKTLL-KEEKFPDVLWRASWSLSGNVLALSGG  274 (297)
T ss_dssp             TTSCCEEEES-SSSCCSSCEEEEEECSSSCCEEEEET
T ss_pred             CCCccceeee-ecccCCCcEEEEEECCCCCEEEEEcC
Confidence            21111 1122 112223   34567888886665543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=97.37  E-value=0.032  Score=51.43  Aligned_cols=190  Identities=7%  Similarity=-0.030  Sum_probs=97.2

Q ss_pred             CcceEEEcC--CCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCC-Cc
Q 015463           70 GPESMAFDP--LGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT-GD  144 (406)
Q Consensus        70 gpe~i~~d~--~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~-g~  144 (406)
                      ...++++.+  +|+.+.+++.|+.|..|+..  .+.......                    ........+++.+++ +.
T Consensus        59 ~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~--------------------~h~~~V~~v~~~p~~~g~  118 (316)
T 3bg1_A           59 PVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHA--------------------GHDSSVNSVCWAPHDYGL  118 (316)
T ss_dssp             CEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEEC--------------------CCSSCCCEEEECCTTTCS
T ss_pred             cEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEcc--------------------CCCCceEEEEECCCCCCc
Confidence            346778864  47778999999999999875  222221111                    012345688998731 44


Q ss_pred             -EEEEeCCCcEEEEeCCCCe-EEEcccccCCcccccccceEEcCCC-----------------CEEEEeCCCchhhhccc
Q 015463          145 -LYIADAYFGLMKVGPEGGL-ATSLATEAEGVPLRFTNDLDIDDEG-----------------NVYFTDSSTNYQRRQMQ  205 (406)
Q Consensus       145 -L~Vad~~~gl~~~d~~~~~-~~~l~~~~~~~~~~~~~~l~~d~dG-----------------~ly~t~~~~~~~~~~~~  205 (406)
                       |..+...+.|..++..++. ..... ...+ ....++.++..+++                 .++++            
T Consensus       119 ~lasgs~D~~i~lwd~~~~~~~~~~~-~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s------------  184 (316)
T 3bg1_A          119 ILACGSSDGAISLLTYTGEGQWEVKK-INNA-HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFAS------------  184 (316)
T ss_dssp             CEEEECSSSCEEEEEECSSSCEEECC-BTTS-SSSCBCCCEECCCCCC------CCSCCCCCCCBEEC------------
T ss_pred             EEEEEcCCCCEEEEecCCCCCcceee-eecc-ccCCcceEEEccccCCccccccccccCccccceEEE------------
Confidence             4445445567777776542 22111 1111 11234566666652                 22222            


Q ss_pred             cccccccccccCCCCCCCcccCCCCeEEEEeCCCC-eEEEe--cccC-CCcceEEEecCC---CEEEEEeCCCCeEEEEE
Q 015463          206 KENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTK-QTTVL--LRNL-QFPNGLSLSKDK---SFFVFCEGSVGRLHKYW  278 (406)
Q Consensus       206 ~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~-~~~~~--~~~~-~~~ngi~l~~d~---~~l~v~~t~~~~i~~~~  278 (406)
                                          +..++.+..+|..++ +.+..  ..+. ...+.++++|++   ..++++....+.|..++
T Consensus       185 --------------------gs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~  244 (316)
T 3bg1_A          185 --------------------GGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT  244 (316)
T ss_dssp             --------------------CBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEE
T ss_pred             --------------------ecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEE
Confidence                                233466666666533 22211  2222 234678999986   12445555567788887


Q ss_pred             eeCCCCcc--eeeeecCCCCCCceEECCCCCEEEEEc
Q 015463          279 LIGEKAGN--LEAFAILPGYPDNVRTNEKGEFWVAIH  313 (406)
Q Consensus       279 ~~g~~~~~--~~~~~~l~g~pd~i~~d~~G~lwv~~~  313 (406)
                      +.....+.  ...+....+....++++++|++.++..
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~  281 (316)
T 3bg1_A          245 CDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSG  281 (316)
T ss_dssp             CSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEE
T ss_pred             ccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEc
Confidence            65421111  112221222233566777777555443

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.31  E-value=0.025  Score=54.88  Aligned_cols=146  Identities=12%  Similarity=0.105  Sum_probs=91.8

Q ss_pred             EEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCCCcE
Q 015463           75 AFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGL  154 (406)
Q Consensus        75 ~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~~gl  154 (406)
                      .+.++++.+++++.+|.|..|+....+.+....                    ........++++++...++.+...+.|
T Consensus       275 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~--------------------~~~~~v~~~~~~~~~~~l~sg~~dg~i  334 (464)
T 3v7d_B          275 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS--------------------GHTDRIYSTIYDHERKRCISASMDTTI  334 (464)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTTEEEEEEC--------------------CCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec--------------------CCCCCEEEEEEcCCCCEEEEEeCCCcE
Confidence            345677889999999999999976322222111                    012446788999833445666666679


Q ss_pred             EEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEE
Q 015463          155 MKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLK  234 (406)
Q Consensus       155 ~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~  234 (406)
                      ..+|.++++........    ...+..+.++  +...++.+.                                +|.|..
T Consensus       335 ~vwd~~~~~~~~~~~~h----~~~v~~~~~~--~~~l~s~s~--------------------------------dg~v~v  376 (464)
T 3v7d_B          335 RIWDLENGELMYTLQGH----TALVGLLRLS--DKFLVSAAA--------------------------------DGSIRG  376 (464)
T ss_dssp             EEEETTTTEEEEEECCC----SSCEEEEEEC--SSEEEEEET--------------------------------TSEEEE
T ss_pred             EEEECCCCcEEEEEeCC----CCcEEEEEEc--CCEEEEEeC--------------------------------CCcEEE
Confidence            99999877643221111    1235566665  445444322                                478999


Q ss_pred             EeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          235 YDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       235 ~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                      ||..+++.............++++++++.+....  .+.|..+++.
T Consensus       377 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--dg~i~iwd~~  420 (464)
T 3v7d_B          377 WDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS--ENQFNIYNLR  420 (464)
T ss_dssp             EETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE--TTEEEEEETT
T ss_pred             EECCCCceeeeecCCCCccEEEEEeCCCEEEEec--CCeEEEEECC
Confidence            9998776544333334455678999998776554  5788888865

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.27  E-value=0.11  Score=52.60  Aligned_cols=118  Identities=14%  Similarity=0.119  Sum_probs=65.1

Q ss_pred             CCCeeEEEec-CCEEEEEeC-C-ceeEEEeecCCCcc----ccCCCCCcccccccCCcCC-cceEEEEeCCCCcEEEEeC
Q 015463           79 LGRGPYTGVA-DGRILFWDG-L-KWTDFAFTSNNRSE----LCNPKPIATSYLKNEHICG-RPLGLRFDKKTGDLYIADA  150 (406)
Q Consensus        79 ~g~~ly~g~~-~g~I~~~~~-~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~p~gi~~d~~~g~L~Vad~  150 (406)
                      +|. +|+++. ++.|+.+|. . .-............    .|               |. ...+++++  ++.+|+++.
T Consensus        62 ~g~-vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~---------------~~~~~~~~~~~--~~~v~v~~~  123 (571)
T 2ad6_A           62 GDM-MYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMC---------------CDVVDRGLAYG--AGQIVKKQA  123 (571)
T ss_dssp             TTE-EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCT---------------TCSCCCCCEEE--TTEEEEECT
T ss_pred             CCE-EEEEeCCCCEEEEEeCCCCccEEEEEcCCCCcccccccc---------------ccccccccEEE--CCEEEEEeC
Confidence            454 999988 899999998 5 32222221111000    01               10 01134555  689999987


Q ss_pred             CCcEEEEeCCCCeEEEcccccCCcc--cccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCC
Q 015463          151 YFGLMKVGPEGGLATSLATEAEGVP--LRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKD  228 (406)
Q Consensus       151 ~~gl~~~d~~~~~~~~l~~~~~~~~--~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  228 (406)
                      ...|+.+|.++|+..--... .+..  .......++. +|.+|++.....                           ...
T Consensus       124 dg~l~alD~~tG~~~W~~~~-~~~~~~~~~~~~P~v~-~g~v~vg~~~~~---------------------------~~~  174 (571)
T 2ad6_A          124 NGHLLALDAKTGKINWEVEV-CDPKVGSTLTQAPFVA-KDTVLMGCSGAE---------------------------LGV  174 (571)
T ss_dssp             TSEEEEEETTTCCEEEEEEC-CCGGGTCBCCSCCEEE-TTEEEEECBCGG---------------------------GTC
T ss_pred             CCEEEEEECCCCCEEEEecC-CCCCccceeccCCEEE-CCEEEEEecCCc---------------------------cCC
Confidence            77899999988865321111 1100  0111122233 678999874310                           012


Q ss_pred             CCeEEEEeCCCCeEE
Q 015463          229 TGRVLKYDPTTKQTT  243 (406)
Q Consensus       229 ~g~l~~~d~~t~~~~  243 (406)
                      .|.|+.+|++||+..
T Consensus       175 ~g~v~a~D~~tG~~~  189 (571)
T 2ad6_A          175 RGAVNAFDLKTGELK  189 (571)
T ss_dssp             CCEEEEEETTTCCEE
T ss_pred             CCEEEEEECCCCcEE
Confidence            478999999988754

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.25  E-value=0.044  Score=51.54  Aligned_cols=115  Identities=10%  Similarity=-0.038  Sum_probs=67.2

Q ss_pred             eEEEEeC-CCCcEEEEeCC------CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccc
Q 015463          134 LGLRFDK-KTGDLYIADAY------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQ  205 (406)
Q Consensus       134 ~gi~~d~-~~g~L~Vad~~------~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~  205 (406)
                      ..+.+++ +++.|+++...      ..|+.++.++++.+.+...   .+...+..+++.+||+ |+++....        
T Consensus       191 ~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~---~~~~~~~~~~~spdg~~l~~~~~~~--------  259 (396)
T 3c5m_A          191 GHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEH---AEGESCTHEFWIPDGSAMAYVSYFK--------  259 (396)
T ss_dssp             EEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCC---CTTEEEEEEEECTTSSCEEEEEEET--------
T ss_pred             ccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeecc---CCCccccceEECCCCCEEEEEecCC--------
Confidence            3556766 23335444322      2588888877765554331   1122356678899996 55553210        


Q ss_pred             cccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEec-CCCEEEEEeC---------------
Q 015463          206 KENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSK-DKSFFVFCEG---------------  269 (406)
Q Consensus       206 ~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~-d~~~l~v~~t---------------  269 (406)
                                          +...+.|+.+|.++++.+.+... ...+ +++++ |++.++++..               
T Consensus       260 --------------------~~~~~~l~~~d~~~g~~~~l~~~-~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~  317 (396)
T 3c5m_A          260 --------------------GQTDRVIYKANPETLENEEVMVM-PPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIE  317 (396)
T ss_dssp             --------------------TTCCEEEEEECTTTCCEEEEEEC-CSEE-EEEECSSSSEEEEEECCC----------CCC
T ss_pred             --------------------CCccceEEEEECCCCCeEEeeeC-CCCC-CCccCCCCceEEEecCCcceeeccccccccC
Confidence                                11123499999988877655421 1222 78899 9996665431               


Q ss_pred             CCCeEEEEEeeC
Q 015463          270 SVGRLHKYWLIG  281 (406)
Q Consensus       270 ~~~~i~~~~~~g  281 (406)
                      ....|+++++.+
T Consensus       318 ~~~~i~~~d~~~  329 (396)
T 3c5m_A          318 NDPFLYVLNTKA  329 (396)
T ss_dssp             CCCEEEEEETTT
T ss_pred             CCCcEEEEeccc
Confidence            236788888764

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=97.25  E-value=0.002  Score=66.89  Aligned_cols=135  Identities=10%  Similarity=0.014  Sum_probs=83.7

Q ss_pred             cceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-EEE
Q 015463           71 PESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYI  147 (406)
Q Consensus        71 pe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-L~V  147 (406)
                      +.++.+.++|. ++....++.|+.++..  ..+.+....                 ..  .......+++++ +|+ |..
T Consensus        18 ~~~~~~s~dg~-~~~~~~d~~i~~~~~~~g~~~~~~~~~-----------------~~--~~~~~~~~~~Sp-Dg~~la~   76 (719)
T 1z68_A           18 TFFPNWISGQE-YLHQSADNNIVLYNIETGQSYTILSNR-----------------TM--KSVNASNYGLSP-DRQFVYL   76 (719)
T ss_dssp             CCCCEESSSSE-EEEECTTSCEEEEESSSCCEEEEECHH-----------------HH--HTTTCSEEEECT-TSSEEEE
T ss_pred             CCccEECCCCe-EEEEcCCCCEEEEEcCCCcEEEEEccc-----------------cc--cccceeeEEECC-CCCeEEE
Confidence            34778889997 5555578899999876  322222110                 00  001145788999 665 444


Q ss_pred             EeC---------CCcEEEEeCCCCeE---EEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhcccccccccccc
Q 015463          148 ADA---------YFGLMKVGPEGGLA---TSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLC  214 (406)
Q Consensus       148 ad~---------~~gl~~~d~~~~~~---~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~  214 (406)
                      +..         ...|+.+|.++++.   ..+.        ..+..+++.+||+ |.++.                    
T Consensus        77 ~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~--------~~~~~~~~SPDG~~la~~~--------------------  128 (719)
T 1z68_A           77 ESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP--------RPIQYLCWSPVGSKLAYVY--------------------  128 (719)
T ss_dssp             EEEEEECSSSCEEEEEEEEETTTTEECCSSCCC--------SSBCCEEECSSTTCEEEEE--------------------
T ss_pred             EecCceeEEeecceEEEEEECCCCccccceecC--------cccccceECCCCCEEEEEE--------------------
Confidence            433         24689999988865   3221        2366789999995 44442                    


Q ss_pred             ccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccC-------------------CCcceEEEecCCCEEEEEe
Q 015463          215 SSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNL-------------------QFPNGLSLSKDKSFFVFCE  268 (406)
Q Consensus       215 ~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~-------------------~~~ngi~l~~d~~~l~v~~  268 (406)
                                    .+.|+.+|..+++...+....                   ....++++||||+.++++.
T Consensus       129 --------------~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~  187 (719)
T 1z68_A          129 --------------QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAE  187 (719)
T ss_dssp             --------------TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEE
T ss_pred             --------------CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEE
Confidence                          146888888777765543211                   1124799999999887764

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=97.24  E-value=0.009  Score=58.91  Aligned_cols=158  Identities=18%  Similarity=0.209  Sum_probs=88.9

Q ss_pred             CcceEEEEeCCCC--cEEEEeCCCcEEEEeCCCCeE-EEcc---ccc-CC---cccccccceEEcCC----CCEEEEeCC
Q 015463          131 GRPLGLRFDKKTG--DLYIADAYFGLMKVGPEGGLA-TSLA---TEA-EG---VPLRFTNDLDIDDE----GNVYFTDSS  196 (406)
Q Consensus       131 ~~p~gi~~d~~~g--~L~Vad~~~gl~~~d~~~~~~-~~l~---~~~-~~---~~~~~~~~l~~d~d----G~ly~t~~~  196 (406)
                      ..|.+|++.+ +|  +|||+.....|+++++++... +.+.   ... .+   .....+.+|+++++    |.||++-+.
T Consensus        14 ~~P~~~a~~p-dG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~   92 (463)
T 2wg3_C           14 RQPVGALHSG-DGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT   92 (463)
T ss_dssp             SSEEEEECCS-SSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred             CCceEEEECC-CCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence            5699999998 66  599999877799998765421 1111   111 11   01234567999985    899998532


Q ss_pred             CchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCC--------eEEEec-----ccCCCcceEEEecCCCE
Q 015463          197 TNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTK--------QTTVLL-----RNLQFPNGLSLSKDKSF  263 (406)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~--------~~~~~~-----~~~~~~ngi~l~~d~~~  263 (406)
                      ..-.   +. .+           +     .....+|.||....+        +.+++.     ...++...|++.||+. 
T Consensus        93 ~~~~---~~-~~-----------~-----~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-  151 (463)
T 2wg3_C           93 NQER---WA-IG-----------P-----HDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-  151 (463)
T ss_dssp             CCCS---SC-SS-----------S-----SCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-
T ss_pred             CCCC---cc-cC-----------C-----cccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-
Confidence            0000   00 00           0     000125666654321        122222     1223445799999995 


Q ss_pred             EEEEeCC-----------------CCeEEEEEeeCCC-------------C----cceeeeecCCCCCCceEECCC----
Q 015463          264 FVFCEGS-----------------VGRLHKYWLIGEK-------------A----GNLEAFAILPGYPDNVRTNEK----  305 (406)
Q Consensus       264 l~v~~t~-----------------~~~i~~~~~~g~~-------------~----~~~~~~~~l~g~pd~i~~d~~----  305 (406)
                      ||++--.                 .+.|+|++++|..             .    ...++|+-.-.-|-++++|+.    
T Consensus       152 LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~  231 (463)
T 2wg3_C          152 LYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDI  231 (463)
T ss_dssp             EEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSST
T ss_pred             EEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCc
Confidence            7887321                 3579999998731             0    124666643334889999986    


Q ss_pred             -CCEEE
Q 015463          306 -GEFWV  310 (406)
Q Consensus       306 -G~lwv  310 (406)
                       |.||+
T Consensus       232 ~G~l~~  237 (463)
T 2wg3_C          232 NINLTI  237 (463)
T ss_dssp             TCSEEE
T ss_pred             ccceEE
Confidence             66554

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=97.23  E-value=0.026  Score=52.17  Aligned_cols=220  Identities=11%  Similarity=0.032  Sum_probs=107.7

Q ss_pred             cCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEE--eCCCCc-E
Q 015463           69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRF--DKKTGD-L  145 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~--d~~~g~-L  145 (406)
                      ....++++.++|+.+++++.+|.|..|+...........                     .......+++  ++ +++ |
T Consensus        87 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~---------------------~~~~v~~~~~~~~~-~~~~l  144 (368)
T 3mmy_A           87 GPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQ---------------------HDAPVKTIHWIKAP-NYSCV  144 (368)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE---------------------CSSCEEEEEEEECS-SCEEE
T ss_pred             CCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeecc---------------------ccCceEEEEEEeCC-CCCEE
Confidence            345788999999989999999999999976211111110                     0233567888  76 565 5


Q ss_pred             EEEeCCCcEEEEeCCCCeEE-EcccccCC--cccccccceEEcCCCCEEEEeCCCchh-hhccc---cccccccccccC-
Q 015463          146 YIADAYFGLMKVGPEGGLAT-SLATEAEG--VPLRFTNDLDIDDEGNVYFTDSSTNYQ-RRQMQ---KENIPLQLCSSL-  217 (406)
Q Consensus       146 ~Vad~~~gl~~~d~~~~~~~-~l~~~~~~--~~~~~~~~l~~d~dG~ly~t~~~~~~~-~~~~~---~~~~~~~~~~e~-  217 (406)
                      +.+...+.|..+|..+++.. .+......  .......-+....++.+.+-+...... .....   ........+... 
T Consensus       145 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (368)
T 3mmy_A          145 MTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDK  224 (368)
T ss_dssp             EEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECT
T ss_pred             EEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccC
Confidence            55555567888998766422 11111000  000011112223344444333211000 00000   000000000000 


Q ss_pred             -CCCCCCcccCCCCeEEEEeCCCCeE----EEecccCC------------CcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          218 -NDPSPIKITKDTGRVLKYDPTTKQT----TVLLRNLQ------------FPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       218 -~~~~~~~~~~~~g~l~~~d~~t~~~----~~~~~~~~------------~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                       ..+..+..+..+|.+..||..+...    ..+.....            ....+++++|++.++.+. ..+.|..+++.
T Consensus       225 ~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~-~dg~i~iwd~~  303 (368)
T 3mmy_A          225 QNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG-SDGRFSFWDKD  303 (368)
T ss_dssp             TSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEE-TTSCEEEEETT
T ss_pred             CCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEc-cCCeEEEEECC
Confidence             0000022355567788888776521    11111111            356789999998776654 45788888875


Q ss_pred             CCCCcceeeeecCCCCCCceEECCCCCEEEEEc
Q 015463          281 GEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIH  313 (406)
Q Consensus       281 g~~~~~~~~~~~l~g~pd~i~~d~~G~lwv~~~  313 (406)
                      ..+  ....+..-.+....++++++|.+.++..
T Consensus       304 ~~~--~~~~~~~~~~~v~~~~~s~~g~~l~~~s  334 (368)
T 3mmy_A          304 ART--KLKTSEQLDQPISACCFNHNGNIFAYAS  334 (368)
T ss_dssp             TTE--EEEECCCCSSCEEEEEECTTSSCEEEEE
T ss_pred             CCc--EEEEecCCCCCceEEEECCCCCeEEEEe
Confidence            311  1111111122334678899998666554

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.21  E-value=0.22  Score=50.06  Aligned_cols=175  Identities=8%  Similarity=-0.024  Sum_probs=97.0

Q ss_pred             cCcceEEEcCCCCeeEEEecCCEEEEEeCC--c--------eeEEEeecCCCccccCCCCCcccc-cccCCcCCcceEEE
Q 015463           69 QGPESMAFDPLGRGPYTGVADGRILFWDGL--K--------WTDFAFTSNNRSELCNPKPIATSY-LKNEHICGRPLGLR  137 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~--------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~gi~  137 (406)
                      .+-+++++.+||+.+-+++.|+.|.  ++.  +        +..+.....+.-....-....+.. ....+ .....+++
T Consensus        16 ~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~-~~~V~~va   92 (588)
T 2j04_A           16 DWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQP-VCYPRVCK   92 (588)
T ss_dssp             SSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSC-SCCEEEEE
T ss_pred             ccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCC-CCcEEEEE
Confidence            5789999999999666667777665  433  1        112222111110000000000000 01112 34467899


Q ss_pred             EeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccC
Q 015463          138 FDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSL  217 (406)
Q Consensus       138 ~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~  217 (406)
                      +++++..|-+++..+.+..++.++ ....+. .....+-..+.++++.+||++.++.+                      
T Consensus        93 wSPdG~~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs----------------------  148 (588)
T 2j04_A           93 PSPIDDWMAVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGN----------------------  148 (588)
T ss_dssp             ECSSSSCEEEEETTSCEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEE----------------------
T ss_pred             ECCCCCEEEEEeCCCcEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEc----------------------
Confidence            999444477777667788888554 333322 11111123477899999997665542                      


Q ss_pred             CCCCCCcccCCCCeEEEEeCCCCe--------EEEec---cc-CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCC
Q 015463          218 NDPSPIKITKDTGRVLKYDPTTKQ--------TTVLL---RN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEK  283 (406)
Q Consensus       218 ~~~~~~~~~~~~g~l~~~d~~t~~--------~~~~~---~~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~  283 (406)
                                .+|.|..||.+++.        +..+.   .+ ......++++||+  +..+ ...+.+..+++++..
T Consensus       149 ----------~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laas-s~D~tVrlWd~~~~~  213 (588)
T 2j04_A          149 ----------EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAA-LSNNSVFSMTVSASS  213 (588)
T ss_dssp             ----------TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEE-ETTCCEEEECCCSSS
T ss_pred             ----------CCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEE-eCCCeEEEEECCCCc
Confidence                      24789999988874        23332   11 1244689999998  4343 445778888877543

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.18  E-value=0.15  Score=47.22  Aligned_cols=155  Identities=13%  Similarity=0.010  Sum_probs=87.3

Q ss_pred             CcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcE-E
Q 015463           70 GPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL-Y  146 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L-~  146 (406)
                      .-.++.++++  .+.+++.++.|..|+..  .........                  .....+....+++.+ ++++ .
T Consensus        16 ~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~------------------~~~h~~~v~~v~~sp-~~~~la   74 (330)
T 2hes_X           16 KIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLD------------------ETAHKKAIRSVAWRP-HTSLLA   74 (330)
T ss_dssp             CEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEEC------------------TTCCCSCEEEEEECT-TSSEEE
T ss_pred             ceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEe------------------cCCccCCEEEEEECC-CCCEEE
Confidence            3456777665  68899999999999865  222221110                  000123467899998 5664 4


Q ss_pred             EEeCCCcEEEEeCCCCeE-----EEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCC
Q 015463          147 IADAYFGLMKVGPEGGLA-----TSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPS  221 (406)
Q Consensus       147 Vad~~~gl~~~d~~~~~~-----~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~  221 (406)
                      .+...+.|..++.+....     ..+.. ..+ ....+.++++.++|++.++.+.                         
T Consensus        75 s~s~D~~v~iw~~~~~~~~~~~~~~~~~-~~~-h~~~V~~v~~sp~g~~las~s~-------------------------  127 (330)
T 2hes_X           75 AGSFDSTVSIWAKEESADRTFEMDLLAI-IEG-HENEVKGVAWSNDGYYLATCSR-------------------------  127 (330)
T ss_dssp             EEETTSCEEEEEC-------CCCEEEEE-EC-----CEEEEEECTTSCEEEEEET-------------------------
T ss_pred             EEeCCCcEEEEEcccCcCccccceeEEE-EcC-CCCcEEEEEECCCCCEEEEEeC-------------------------
Confidence            555556677887643211     11110 111 1234778999999987776532                         


Q ss_pred             CCcccCCCCeEEEEeCCC-C---eE-EEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          222 PIKITKDTGRVLKYDPTT-K---QT-TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       222 ~~~~~~~~g~l~~~d~~t-~---~~-~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                             ++.+..+|... +   +. ..+.......+.++++|+++.+..+ ...+.|..++..
T Consensus       128 -------D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~-s~D~~i~iW~~~  183 (330)
T 2hes_X          128 -------DKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASS-SYDDTVRIWKDY  183 (330)
T ss_dssp             -------TSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEE-ETTSCEEEEEEE
T ss_pred             -------CCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEE-cCCCeEEEEECC
Confidence                   36688888732 2   12 2222222345688999999866544 445667766654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=97.15  E-value=0.013  Score=61.12  Aligned_cols=138  Identities=9%  Similarity=0.043  Sum_probs=80.8

Q ss_pred             ceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-EEEE
Q 015463           72 ESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYIA  148 (406)
Q Consensus        72 e~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-L~Va  148 (406)
                      .++.+.++|..++.+  +|.|+.++..  +...+.... .                .........++.+++ +|+ |.++
T Consensus        20 ~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~-~----------------~~~~~~~~~~~~~Sp-dg~~l~~~   79 (740)
T 4a5s_A           20 YSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENS-T----------------FDEFGHSINDYSISP-DGQFILLE   79 (740)
T ss_dssp             CCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTT-T----------------TTTCCSCCCEEEECT-TSSEEEEE
T ss_pred             cccEECCCCcEEEEc--CCcEEEEECCCCceEEEEech-h----------------hhhhcccccceEECC-CCCEEEEE
Confidence            367888999855554  8999999976  222221110 0                000011223567888 565 4444


Q ss_pred             eCC---------CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCC
Q 015463          149 DAY---------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLN  218 (406)
Q Consensus       149 d~~---------~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~  218 (406)
                      ...         ..++.+|.++++.+.+....     ......++.+||+ |.++..                       
T Consensus        80 ~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~-----~~~~~~~~SPdG~~la~~~~-----------------------  131 (740)
T 4a5s_A           80 YNYVKQWRHSYTASYDIYDLNKRQLITEERIP-----NNTQWVTWSPVGHKLAYVWN-----------------------  131 (740)
T ss_dssp             EEEEECSSSCEEEEEEEEETTTTEECCSSCCC-----TTEEEEEECSSTTCEEEEET-----------------------
T ss_pred             ECCeeeEEEccceEEEEEECCCCcEEEcccCC-----CcceeeEECCCCCEEEEEEC-----------------------
Confidence            431         24678999998766543211     1345678889985 544421                       


Q ss_pred             CCCCCcccCCCCeEEEEeCCCCeEEEeccc-------------------CCCcceEEEecCCCEEEEEe
Q 015463          219 DPSPIKITKDTGRVLKYDPTTKQTTVLLRN-------------------LQFPNGLSLSKDKSFFVFCE  268 (406)
Q Consensus       219 ~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-------------------~~~~ngi~l~~d~~~l~v~~  268 (406)
                                 +.|+.+|..+++.+.+...                   +....++++||||+.|.+..
T Consensus       132 -----------~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~  189 (740)
T 4a5s_A          132 -----------NDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ  189 (740)
T ss_dssp             -----------TEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred             -----------CeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEE
Confidence                       4577777777765554321                   11223588999999877653

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=97.14  E-value=0.055  Score=49.26  Aligned_cols=114  Identities=15%  Similarity=0.109  Sum_probs=61.5

Q ss_pred             cCcceEEEcCC--CCeeEEEecCCEEEEEeCC---ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC--
Q 015463           69 QGPESMAFDPL--GRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK--  141 (406)
Q Consensus        69 ~gpe~i~~d~~--g~~ly~g~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~--  141 (406)
                      ....++++.++  ++.+++++.+|.|..|+..   ....+...... ...+-         ...........+.+.++  
T Consensus       111 ~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~~---------~~~~~~~~~~~~~~~p~~~  180 (351)
T 3f3f_A          111 GSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEM-KVLSI---------PPANHLQSDFCLSWCPSRF  180 (351)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEE-ESCSC---------CCSSCSCCCEEEEECCCSS
T ss_pred             CceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccc-ccccc---------ccCCcccceeEEEeccCCC
Confidence            34578899988  8888999999999999865   11111110000 00000         00111344567888873  


Q ss_pred             -CCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCC----CEEEEe
Q 015463          142 -TGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG----NVYFTD  194 (406)
Q Consensus       142 -~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG----~ly~t~  194 (406)
                       ...+.++...+.+...+...++...+... .+ ....+.++++.++|    ++.++.
T Consensus       181 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~i~~~~~~p~~~~~~~~l~s~  236 (351)
T 3f3f_A          181 SPEKLAVSALEQAIIYQRGKDGKLHVAAKL-PG-HKSLIRSISWAPSIGRWYQLIATG  236 (351)
T ss_dssp             SCCEEEEEETTEEEEEEECTTSCEEEEEEC-CC-CCSCEEEEEECCCSSCSSEEEEEE
T ss_pred             CCcEEEEecCCCcEEEEccCCCceeeeeec-CC-CCcceeEEEECCCCCCcceEEEEE
Confidence             33455555544555555555544322211 11 12346788899887    555554

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.13  E-value=0.2  Score=48.10  Aligned_cols=143  Identities=13%  Similarity=0.101  Sum_probs=81.2

Q ss_pred             EEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCCCcE
Q 015463           75 AFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGL  154 (406)
Q Consensus        75 ~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~~gl  154 (406)
                      ++..+|+.+.+|+.+|.|..|+....+......                    ...+....+.++  +..|+++...+.|
T Consensus       138 ~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~--------------------~h~~~v~~l~~~--~~~l~sg~~dg~i  195 (435)
T 1p22_A          138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILT--------------------GHTGSVLCLQYD--ERVIITGSSDSTV  195 (435)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESSSCCEEEEEC--------------------CCSSCEEEEECC--SSEEEEEETTSCE
T ss_pred             EEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEc--------------------CCCCcEEEEEEC--CCEEEEEcCCCeE
Confidence            344567878999999999999876222211111                    012335566664  4567777776779


Q ss_pred             EEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEE
Q 015463          155 MKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLK  234 (406)
Q Consensus       155 ~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~  234 (406)
                      ..+|.++++........    ...+.+++++  +...++.+                                .+|.|..
T Consensus       196 ~vwd~~~~~~~~~~~~h----~~~v~~l~~~--~~~l~s~s--------------------------------~dg~i~v  237 (435)
T 1p22_A          196 RVWDVNTGEMLNTLIHH----CEAVLHLRFN--NGMMVTCS--------------------------------KDRSIAV  237 (435)
T ss_dssp             EEEESSSCCEEEEECCC----CSCEEEEECC--TTEEEEEE--------------------------------TTSCEEE
T ss_pred             EEEECCCCcEEEEEcCC----CCcEEEEEEc--CCEEEEee--------------------------------CCCcEEE
Confidence            99998877643222111    1234555654  33444332                                1367888


Q ss_pred             EeCCCCeEE---Eeccc-CCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          235 YDPTTKQTT---VLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       235 ~d~~t~~~~---~~~~~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                      ||..+++..   ....+ ......+++  +++.++.+. ..+.|..+++.
T Consensus       238 wd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~-~dg~i~vwd~~  284 (435)
T 1p22_A          238 WDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSAS-GDRTIKVWNTS  284 (435)
T ss_dssp             EECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEE-TTSEEEEEETT
T ss_pred             EeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEe-CCCeEEEEECC
Confidence            888766532   11222 122234444  677665554 46788888865

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=97.01  E-value=0.14  Score=47.90  Aligned_cols=72  Identities=13%  Similarity=0.108  Sum_probs=49.0

Q ss_pred             cccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCe-EEEEeCCCCeEEEecc-c--CCCcc
Q 015463          178 FTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGR-VLKYDPTTKQTTVLLR-N--LQFPN  253 (406)
Q Consensus       178 ~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~-l~~~d~~t~~~~~~~~-~--~~~~n  253 (406)
                      .+.++++.++|++.++.+                                .+|. +..+|..+++...... +  ....+
T Consensus       197 ~v~~~~~s~~g~~l~s~s--------------------------------~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~  244 (355)
T 3vu4_A          197 PIKMVRLNRKSDMVATCS--------------------------------QDGTIIRVFKTEDGVLVREFRRGLDRADVV  244 (355)
T ss_dssp             CEEEEEECTTSSEEEEEE--------------------------------TTCSEEEEEETTTCCEEEEEECTTCCSCEE
T ss_pred             ceEEEEECCCCCEEEEEe--------------------------------CCCCEEEEEECCCCcEEEEEEcCCCCCcEE
Confidence            356777777777666643                                2476 8889998876544333 2  23457


Q ss_pred             eEEEecCCCEEEEEeCCCCeEEEEEeeCC
Q 015463          254 GLSLSKDKSFFVFCEGSVGRLHKYWLIGE  282 (406)
Q Consensus       254 gi~l~~d~~~l~v~~t~~~~i~~~~~~g~  282 (406)
                      .++++||++.+..+. ..+.|..+++...
T Consensus       245 ~~~~s~~~~~l~s~s-~d~~v~iw~~~~~  272 (355)
T 3vu4_A          245 DMKWSTDGSKLAVVS-DKWTLHVFEIFND  272 (355)
T ss_dssp             EEEECTTSCEEEEEE-TTCEEEEEESSCC
T ss_pred             EEEECCCCCEEEEEE-CCCEEEEEEccCC
Confidence            899999998776554 4578888887643

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=97.00  E-value=0.097  Score=47.34  Aligned_cols=215  Identities=11%  Similarity=-0.010  Sum_probs=110.7

Q ss_pred             CcccCcceEEEcCCCCeeEEEecCCEEEEEeCC--c-eeEEEeecCCC----------------cc--ccCCCCCccccc
Q 015463           66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--K-WTDFAFTSNNR----------------SE--LCNPKPIATSYL  124 (406)
Q Consensus        66 ~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~-~~~~~~~~~~~----------------~~--~~~~~~~~~~~~  124 (406)
                      +.-..-.++++.++|+.+.+|+.+|.|..|+..  + ...+.......                ..  ............
T Consensus        65 ~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~  144 (318)
T 4ggc_A           65 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVA  144 (318)
T ss_dssp             STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEE
T ss_pred             CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEE
Confidence            344567789999999999999999999999876  1 11111000000                00  000000000000


Q ss_pred             ccCCcCCcceEEEEeCCCCc-EEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCC-CEEEEeCCCchhhh
Q 015463          125 KNEHICGRPLGLRFDKKTGD-LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRR  202 (406)
Q Consensus       125 ~~~~~~~~p~gi~~d~~~g~-L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG-~ly~t~~~~~~~~~  202 (406)
                      ...........+.+.+ +++ |..+...+.|..+|..+++...............+..++..+++ ++....+       
T Consensus       145 ~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-------  216 (318)
T 4ggc_A          145 TLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-------  216 (318)
T ss_dssp             EEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE-------
T ss_pred             EEcCccCceEEEEEcC-CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe-------
Confidence            0011123344566666 454 44444445677788765532111000000011223445555543 3332221       


Q ss_pred             ccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEe-CCCCeEEEEEeeC
Q 015463          203 QMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCE-GSVGRLHKYWLIG  281 (406)
Q Consensus       203 ~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~-t~~~~i~~~~~~g  281 (406)
                                             +...+.+..+|..+...............++++++++.++.+. ...+.|..+++..
T Consensus       217 -----------------------~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~  273 (318)
T 4ggc_A          217 -----------------------GTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT  273 (318)
T ss_dssp             -----------------------CTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT
T ss_pred             -----------------------cCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCC
Confidence                                   1224667778887776655544445556788889988877654 3456788888652


Q ss_pred             CCCcceeeeecCCCCC---CceEECCCCCEEEEEccCC
Q 015463          282 EKAGNLEAFAILPGYP---DNVRTNEKGEFWVAIHCRR  316 (406)
Q Consensus       282 ~~~~~~~~~~~l~g~p---d~i~~d~~G~lwv~~~~~~  316 (406)
                      .     +....+.|..   ..++++++|++.++....+
T Consensus       274 ~-----~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~  306 (318)
T 4ggc_A          274 M-----AKVAELKGHTSRVLSLTMSPDGATVASAAADE  306 (318)
T ss_dssp             C-----CEEEEECCCSSCEEEEEECTTSSCEEEEETTT
T ss_pred             C-----cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCC
Confidence            1     2222233333   3467889998777655443

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=96.95  E-value=0.052  Score=58.12  Aligned_cols=154  Identities=7%  Similarity=-0.094  Sum_probs=96.9

Q ss_pred             cceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeC
Q 015463           71 PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA  150 (406)
Q Consensus        71 pe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~  150 (406)
                      ..++++.+ |+.|.+++.++.|..|+...-+.+....                    + .+....++++++...|++++.
T Consensus        61 V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~--------------------~-~~~V~~v~~sp~g~~l~sgs~  118 (902)
T 2oaj_A           61 IKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF--------------------V-PGKITSIDTDASLDWMLIGLQ  118 (902)
T ss_dssp             EEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE--------------------C-SSCEEEEECCTTCSEEEEEET
T ss_pred             EEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc--------------------C-CCCEEEEEECCCCCEEEEEcC
Confidence            46888888 7778889999999999976211111000                    0 134678899984455777777


Q ss_pred             CCcEEEEeCCCCeEEEccc-------ccCCcccccccceEEcCCC-CEEEEeCCCchhhhccccccccccccccCCCCCC
Q 015463          151 YFGLMKVGPEGGLATSLAT-------EAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSP  222 (406)
Q Consensus       151 ~~gl~~~d~~~~~~~~l~~-------~~~~~~~~~~~~l~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  222 (406)
                      .+.|..+|.++++...+..       .........+.++++.+++ .+.++.+.                          
T Consensus       119 dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~--------------------------  172 (902)
T 2oaj_A          119 NGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYE--------------------------  172 (902)
T ss_dssp             TSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECS--------------------------
T ss_pred             CCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeC--------------------------
Confidence            7789999998876532211       0001112357889999864 44444322                          


Q ss_pred             CcccCCCCeEEEEeCCCCeEEEecccC-------------------CCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          223 IKITKDTGRVLKYDPTTKQTTVLLRNL-------------------QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       223 ~~~~~~~g~l~~~d~~t~~~~~~~~~~-------------------~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                            +|.+ .+|.++++........                   ...+.++++||++.+..+ ...+.|..+++.
T Consensus       173 ------dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasg-s~Dg~i~lWd~~  241 (902)
T 2oaj_A          173 ------YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITI-HEDNSLVFWDAN  241 (902)
T ss_dssp             ------SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEE-ETTCCEEEEETT
T ss_pred             ------CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECC
Confidence                  3667 8998887654332211                   235689999999866554 445678777764

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=96.93  E-value=0.024  Score=55.27  Aligned_cols=157  Identities=12%  Similarity=0.068  Sum_probs=90.9

Q ss_pred             cceEEEcCCCCeeE----EEecCCEEEEEeCCce--------eEEEeecCCCccccCCCCCcccccccCCcCCcceEEEE
Q 015463           71 PESMAFDPLGRGPY----TGVADGRILFWDGLKW--------TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRF  138 (406)
Q Consensus        71 pe~i~~d~~g~~ly----~g~~~g~I~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~  138 (406)
                      ..+++++++|+.++    ++..++.|..|+....        +.+....                 ........+.++++
T Consensus        95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~-----------------~~~~h~~~V~~v~~  157 (434)
T 2oit_A           95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHK-----------------LLKDAGGMVIDMKW  157 (434)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEE-----------------CCCSGGGSEEEEEE
T ss_pred             ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeee-----------------ccCCCCCceEEEEE
Confidence            67899999999777    5667888888875411        0000000                 00111345778999


Q ss_pred             eCCCCcEE-EEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccC
Q 015463          139 DKKTGDLY-IADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSL  217 (406)
Q Consensus       139 d~~~g~L~-Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~  217 (406)
                      .+++++++ .+...+.|..+|.+++.... ...  + ....+.+++..++|+..++.+.                     
T Consensus       158 ~p~~~~~las~s~Dg~v~iwD~~~~~~~~-~~~--~-~~~~v~~v~wspdg~~lasgs~---------------------  212 (434)
T 2oit_A          158 NPTVPSMVAVCLADGSIAVLQVTETVKVC-ATL--P-STVAVTSVCWSPKGKQLAVGKQ---------------------  212 (434)
T ss_dssp             CSSCTTEEEEEETTSCEEEEEESSSEEEE-EEE--C-GGGCEEEEEECTTSSCEEEEET---------------------
T ss_pred             CCCCCCEEEEEECCCeEEEEEcCCCccee-ecc--C-CCCceeEEEEcCCCCEEEEEcC---------------------
Confidence            98435654 45556678899988764321 111  1 1235788999999976555322                     


Q ss_pred             CCCCCCcccCCCCeEEEEeCCCCeEEEecccCC-------CcceEEEecCCCEEEEEeCCC------CeEEEEEee
Q 015463          218 NDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQ-------FPNGLSLSKDKSFFVFCEGSV------GRLHKYWLI  280 (406)
Q Consensus       218 ~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~-------~~ngi~l~~d~~~l~v~~t~~------~~i~~~~~~  280 (406)
                                 +|.|..||.+......+.....       ....+++++++.++....+..      ..+..+++.
T Consensus       213 -----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~  277 (434)
T 2oit_A          213 -----------NGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLP  277 (434)
T ss_dssp             -----------TSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECC
T ss_pred             -----------CCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEec
Confidence                       4779999987333333321111       234677777776655544333      236666665

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=96.89  E-value=0.33  Score=46.59  Aligned_cols=142  Identities=11%  Similarity=-0.009  Sum_probs=84.4

Q ss_pred             EcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCCCcEE
Q 015463           76 FDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLM  155 (406)
Q Consensus        76 ~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~~gl~  155 (406)
                      +..+|+.+++++.+|.|..|+....+......                    ...+....+.++  ++.++.+...+.|.
T Consensus       125 ~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~--------------------~h~~~v~~~~~~--~~~l~s~~~dg~i~  182 (445)
T 2ovr_B          125 LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV--------------------GHTGGVWSSQMR--DNIIISGSTDRTLK  182 (445)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTTCCEEEECC--------------------CCSSCEEEEEEE--TTEEEEEETTSCEE
T ss_pred             EEEcCCEEEEEECCCcEEEEECCCCcEEEEEc--------------------CCCCCEEEEEec--CCEEEEEeCCCeEE
Confidence            44457879999999999999976222221111                    112335677787  45677777777899


Q ss_pred             EEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEE
Q 015463          156 KVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKY  235 (406)
Q Consensus       156 ~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~  235 (406)
                      .+|.++++........    ...+.++..+  ++..++.+                                .+|.|..|
T Consensus       183 vwd~~~~~~~~~~~~h----~~~v~~~~~~--~~~l~s~s--------------------------------~dg~i~~w  224 (445)
T 2ovr_B          183 VWNAETGECIHTLYGH----TSTVRCMHLH--EKRVVSGS--------------------------------RDATLRVW  224 (445)
T ss_dssp             EEETTTTEEEEEECCC----SSCEEEEEEE--TTEEEEEE--------------------------------TTSEEEEE
T ss_pred             EEECCcCcEEEEECCC----CCcEEEEEec--CCEEEEEe--------------------------------CCCEEEEE
Confidence            9999887643222111    1234566664  33333322                                24789999


Q ss_pred             eCCCCeEEEecccC-CCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          236 DPTTKQTTVLLRNL-QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       236 d~~t~~~~~~~~~~-~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                      |..+++......+. .....+++  +++.++.+. ..+.|..+++.
T Consensus       225 d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~-~dg~i~iwd~~  267 (445)
T 2ovr_B          225 DIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGA-YDFMVKVWDPE  267 (445)
T ss_dssp             ESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEE-TTSCEEEEEGG
T ss_pred             ECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEc-CCCEEEEEECC
Confidence            98877654433322 22334544  677665554 46788888865

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=96.85  E-value=0.055  Score=50.08  Aligned_cols=116  Identities=12%  Similarity=0.103  Sum_probs=70.9

Q ss_pred             cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCe
Q 015463          153 GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGR  231 (406)
Q Consensus       153 gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~  231 (406)
                      .|+.++.++++.+.+         ..+..+.+.+||+ |.++....                            ......
T Consensus        44 ~l~~~d~~~~~~~~l---------~~~~~~~~SpDg~~la~~~~~~----------------------------~~~~~~   86 (347)
T 2gop_A           44 TIVIENLKNNARRFI---------ENATMPRISPDGKKIAFMRANE----------------------------EKKVSE   86 (347)
T ss_dssp             EEEEEETTTCCEEEE---------ESCEEEEECTTSSEEEEEEEET----------------------------TTTEEE
T ss_pred             eEEEEeCCCCceEEc---------ccCCCeEECCCCCEEEEEEecc----------------------------CCCcce
Confidence            466677776665444         2355678999995 55443110                            011245


Q ss_pred             EEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCC--------------------------CCeEEEEEeeCCCCc
Q 015463          232 VLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS--------------------------VGRLHKYWLIGEKAG  285 (406)
Q Consensus       232 l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~--------------------------~~~i~~~~~~g~~~~  285 (406)
                      |+.+|.++++...+...-. ...++++||++.++++...                          ..+|+++++.+.   
T Consensus        87 l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~---  162 (347)
T 2gop_A           87 IWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE---  162 (347)
T ss_dssp             EEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTT---
T ss_pred             EEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC---
Confidence            9999998888776654333 6788999999988877522                          256888887542   


Q ss_pred             ce-eeeecCCCCCCceEECCCCCEEEEE
Q 015463          286 NL-EAFAILPGYPDNVRTNEKGEFWVAI  312 (406)
Q Consensus       286 ~~-~~~~~l~g~pd~i~~d~~G~lwv~~  312 (406)
                      .. ..+.. + ....+..+++| +.++.
T Consensus       163 ~~~~~l~~-~-~~~~~~~spdg-~~~~~  187 (347)
T 2gop_A          163 EVIEEFEK-P-RFSSGIWHRDK-IVVNV  187 (347)
T ss_dssp             EEEEEEEE-E-TTCEEEEETTE-EEEEE
T ss_pred             eEEeeecC-C-CcccccCCCCe-EEEEE
Confidence            22 22222 2 34567778888 55444

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.84  E-value=0.3  Score=45.30  Aligned_cols=97  Identities=14%  Similarity=0.171  Sum_probs=56.4

Q ss_pred             ceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEe
Q 015463           72 ESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (406)
Q Consensus        72 e~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad  149 (406)
                      .+|++++ ++ +|+....|.|++-...  .|+......                    ...+.+.+|++.. ++++|++.
T Consensus        83 ~~i~~~~-~~-~~~~g~~g~i~~S~DgG~tW~~~~~~~--------------------~~~~~~~~i~~~~-~~~~~~~~  139 (327)
T 2xbg_A           83 NSVSFQG-NE-GWIVGEPPIMLHTTDGGQSWSQIPLDP--------------------KLPGSPRLIKALG-NGSAEMIT  139 (327)
T ss_dssp             EEEEEET-TE-EEEEEETTEEEEESSTTSSCEECCCCT--------------------TCSSCEEEEEEEE-TTEEEEEE
T ss_pred             EEEEecC-Ce-EEEEECCCeEEEECCCCCCceECcccc--------------------CCCCCeEEEEEEC-CCCEEEEe
Confidence            4567764 44 7777677878875433  555442110                    0113456787766 68899887


Q ss_pred             CCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeC
Q 015463          150 AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDS  195 (406)
Q Consensus       150 ~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~  195 (406)
                      ...+|++-.-.+...+.+.....    ..+.+++++++|.+|+...
T Consensus       140 ~~g~v~~S~DgG~tW~~~~~~~~----~~~~~~~~~~~~~~~~~g~  181 (327)
T 2xbg_A          140 NVGAIYRTKDSGKNWQALVQEAI----GVMRNLNRSPSGEYVAVSS  181 (327)
T ss_dssp             TTCCEEEESSTTSSEEEEECSCC----CCEEEEEECTTSCEEEEET
T ss_pred             CCccEEEEcCCCCCCEEeecCCC----cceEEEEEcCCCcEEEEEC
Confidence            66667765433444444332211    2356788888888887653

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.81  E-value=0.59  Score=48.21  Aligned_cols=40  Identities=20%  Similarity=0.271  Sum_probs=25.4

Q ss_pred             eEEEEEECC-CCCEEEEEECCCCCeeeceeEEEEeCCEEEEec
Q 015463          353 HAMAVKYSP-EGKILQVLEDSKGKVVKAISEVEEKDGKLWMGS  394 (406)
Q Consensus       353 ~~~v~~~d~-~g~~~~~~~~~~g~~~~~~s~~~~~~g~Ly~Gs  394 (406)
                      .+.+.++|. +|+.+..+.-+.+.....  ...+.+|+.|+..
T Consensus       497 dg~l~a~D~~tG~~lw~~~~~~~~~~~p--~~y~~~G~~~v~~  537 (677)
T 1kb0_A          497 DGRLVAYHAATGEKLWEAPTGTGVVAAP--STYMVDGRQYVSV  537 (677)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTEEEEEE
T ss_pred             CCcEEEEECCCCceeeeeeCCCCcccCC--EEEEeCCEEEEEE
Confidence            345777885 589999887665532222  2235788888764

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=96.78  E-value=0.41  Score=45.97  Aligned_cols=145  Identities=11%  Similarity=0.007  Sum_probs=85.0

Q ss_pred             cceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeC
Q 015463           71 PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA  150 (406)
Q Consensus        71 pe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~  150 (406)
                      ..+++++  ++.++++..+|.|..|+...........                    ........+.++  ++.++++..
T Consensus       162 v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~--------------------~h~~~v~~~~~~--~~~l~s~s~  217 (445)
T 2ovr_B          162 VWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLY--------------------GHTSTVRCMHLH--EKRVVSGSR  217 (445)
T ss_dssp             EEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEEC--------------------CCSSCEEEEEEE--TTEEEEEET
T ss_pred             EEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEEC--------------------CCCCcEEEEEec--CCEEEEEeC
Confidence            3556664  5568999999999999976222221111                    012335577776  456788877


Q ss_pred             CCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCC
Q 015463          151 YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTG  230 (406)
Q Consensus       151 ~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g  230 (406)
                      .+.|..+|..+++........    ...+..+..  +|+..++.+.                                +|
T Consensus       218 dg~i~~wd~~~~~~~~~~~~~----~~~v~~~~~--~~~~l~~~~~--------------------------------dg  259 (445)
T 2ovr_B          218 DATLRVWDIETGQCLHVLMGH----VAAVRCVQY--DGRRVVSGAY--------------------------------DF  259 (445)
T ss_dssp             TSEEEEEESSSCCEEEEEECC----SSCEEEEEE--CSSCEEEEET--------------------------------TS
T ss_pred             CCEEEEEECCCCcEEEEEcCC----cccEEEEEE--CCCEEEEEcC--------------------------------CC
Confidence            778999998876543222111    123455666  4544444321                                36


Q ss_pred             eEEEEeCCCCeEEEecccC-CCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          231 RVLKYDPTTKQTTVLLRNL-QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       231 ~l~~~d~~t~~~~~~~~~~-~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                      .+..||..+++......+. .....+++  |++.++.+. ..+.|..+++.
T Consensus       260 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~-~d~~i~i~d~~  307 (445)
T 2ovr_B          260 MVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGS-LDTSIRVWDVE  307 (445)
T ss_dssp             CEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEE-TTSCEEEEETT
T ss_pred             EEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEe-CCCeEEEEECC
Confidence            7889998877654433322 22234444  777766554 45788888875

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=96.77  E-value=0.39  Score=49.59  Aligned_cols=54  Identities=13%  Similarity=0.060  Sum_probs=32.9

Q ss_pred             CeEEEEeCCCC--eEEEecccCCCcceEEEecCCCEEEEEeCC---CCeEEEEEeeCCCC
Q 015463          230 GRVLKYDPTTK--QTTVLLRNLQFPNGLSLSKDKSFFVFCEGS---VGRLHKYWLIGEKA  284 (406)
Q Consensus       230 g~l~~~d~~t~--~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~---~~~i~~~~~~g~~~  284 (406)
                      ..++.+|.+++  +.+.+.......... ++++++.+|+....   ..+|++++++++..
T Consensus       259 ~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~  317 (693)
T 3iuj_A          259 NRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP  317 (693)
T ss_dssp             CEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG
T ss_pred             cEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc
Confidence            46888887665  455554332222222 66778777776543   36899999876433

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=96.73  E-value=0.15  Score=53.01  Aligned_cols=116  Identities=15%  Similarity=0.121  Sum_probs=65.0

Q ss_pred             EEEEeCCCCcEEEEeCCC--------------cEEEEeCCCCeE--EEcccccCCcccccccceEEcCCCC-EEEEeCCC
Q 015463          135 GLRFDKKTGDLYIADAYF--------------GLMKVGPEGGLA--TSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSST  197 (406)
Q Consensus       135 gi~~d~~~g~L~Vad~~~--------------gl~~~d~~~~~~--~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~  197 (406)
                      ++++.++ ..|+++....              .|++++..++..  +.+... ... ..+..++.+++||+ |.++....
T Consensus       213 ~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~-~~~-~~~~~~~~~SpDG~~l~~~~~~~  289 (741)
T 1yr2_A          213 GLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFAT-PEL-PKRGHGASVSSDGRWVVITSSEG  289 (741)
T ss_dssp             CCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECC-TTC-TTCEEEEEECTTSCEEEEEEECT
T ss_pred             cEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEecc-CCC-CeEEEEEEECCCCCEEEEEEEcc
Confidence            4567774 6666665432              388888766542  111111 111 11345778899995 44443210


Q ss_pred             chhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCC--e-EEEecccCCCcceEEEecCCCEEEEEeCC---C
Q 015463          198 NYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTK--Q-TTVLLRNLQFPNGLSLSKDKSFFVFCEGS---V  271 (406)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~--~-~~~~~~~~~~~ngi~l~~d~~~l~v~~t~---~  271 (406)
                                                  ......|+.+|.+++  + .+.+.......... +++|++.+++....   .
T Consensus       290 ----------------------------~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~  340 (741)
T 1yr2_A          290 ----------------------------TDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPL  340 (741)
T ss_dssp             ----------------------------TCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTT
T ss_pred             ----------------------------CCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCC
Confidence                                        011356888888776  5 55554433222233 45888888877542   4


Q ss_pred             CeEEEEEeeCC
Q 015463          272 GRLHKYWLIGE  282 (406)
Q Consensus       272 ~~i~~~~~~g~  282 (406)
                      .+|++++++++
T Consensus       341 ~~l~~~d~~~~  351 (741)
T 1yr2_A          341 KKIVRVDLSGS  351 (741)
T ss_dssp             CEEEEEECSSS
T ss_pred             CEEEEEeCCCC
Confidence            57999998653

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=96.70  E-value=0.0038  Score=59.63  Aligned_cols=142  Identities=13%  Similarity=0.105  Sum_probs=54.7

Q ss_pred             eEEEcCCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEe-C
Q 015463           73 SMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD-A  150 (406)
Q Consensus        73 ~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad-~  150 (406)
                      +.+++  ++.+|+++.+|.|+.+|.. .-....... .  .                ....|    +.. ++.++++. .
T Consensus         4 sP~v~--~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~--~----------------~~s~p----~~~-~g~~~v~~s~   57 (369)
T 2hz6_A            4 TVTLP--ETLLFVSTLDGSLHAVSKRTGSIKWTLKE-D--P----------------VLQVP----THV-EEPAFLPDPN   57 (369)
T ss_dssp             ----C--TTEEEEEETTSEEEEEETTTCCEEEEEEC-C--C----------------SCCCC----------CCEEECTT
T ss_pred             CCeee--CCEEEEEcCCCEEEEEECCCCCEEEEecC-C--C----------------ceecc----eEc-CCCEEEEeCC
Confidence            34453  4459999999999999975 222221111 1  0                01112    112 46666663 4


Q ss_pred             CCcEEEEeCCCCeE-EEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCC
Q 015463          151 YFGLMKVGPEGGLA-TSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDT  229 (406)
Q Consensus       151 ~~gl~~~d~~~~~~-~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~  229 (406)
                      .+.|+.+|.++|+. ..+......  . .....++..+|.+|++..                                 +
T Consensus        58 dg~l~a~d~~tG~~~w~~~~~~~~--~-~~~sp~~~~~~~v~~g~~---------------------------------d  101 (369)
T 2hz6_A           58 DGSLYTLGSKNNEGLTKLPFTIPE--L-VQASPCRSSDGILYMGKK---------------------------------Q  101 (369)
T ss_dssp             TCCEEEC-----CCSEECSCCHHH--H-HTTCSCC-----CCCCEE---------------------------------E
T ss_pred             CCEEEEEECCCCceeeeeeccCcc--c-cccCceEecCCEEEEEeC---------------------------------C
Confidence            46799999876653 222111000  0 001112223566776542                                 2


Q ss_pred             CeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          230 GRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       230 g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                      |.|+.+|+++|+.......   ......+++++.+|+... .+.|+.++.+
T Consensus       102 g~v~a~D~~tG~~~w~~~~---~~~~~~~p~~~~v~~~~~-dg~v~a~d~~  148 (369)
T 2hz6_A          102 DIWYVIDLLTGEKQQTLSS---AFADSLSPSTSLLYLGRT-EYTITMYDTK  148 (369)
T ss_dssp             EEEEEECCC-------------------------EEEEEE-EEEEECCCSS
T ss_pred             CEEEEEECCCCcEEEEecC---CCcccccccCCEEEEEec-CCEEEEEECC
Confidence            6799999998875432211   112345567777777643 4677777765

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=96.69  E-value=0.48  Score=45.43  Aligned_cols=148  Identities=16%  Similarity=0.122  Sum_probs=84.3

Q ss_pred             cceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeC
Q 015463           71 PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA  150 (406)
Q Consensus        71 pe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~  150 (406)
                      ..++.+  +++.+++|+.+|.|..|+...........                    ........++++  ++.++.+..
T Consensus       176 v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~--------------------~h~~~v~~l~~~--~~~l~s~s~  231 (435)
T 1p22_A          176 VLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLI--------------------HHCEAVLHLRFN--NGMMVTCSK  231 (435)
T ss_dssp             EEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEEC--------------------CCCSCEEEEECC--TTEEEEEET
T ss_pred             EEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEc--------------------CCCCcEEEEEEc--CCEEEEeeC
Confidence            345555  67779999999999999876211111111                    112335667775  457777777


Q ss_pred             CCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCC
Q 015463          151 YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTG  230 (406)
Q Consensus       151 ~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g  230 (406)
                      .+.|..+|..++..........+. ...+..+..  +|+..++.+.                                +|
T Consensus       232 dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~--~~~~l~s~~~--------------------------------dg  276 (435)
T 1p22_A          232 DRSIAVWDMASPTDITLRRVLVGH-RAAVNVVDF--DDKYIVSASG--------------------------------DR  276 (435)
T ss_dssp             TSCEEEEECSSSSCCEEEEEECCC-SSCEEEEEE--ETTEEEEEET--------------------------------TS
T ss_pred             CCcEEEEeCCCCCCceeeeEecCC-CCcEEEEEe--CCCEEEEEeC--------------------------------CC
Confidence            777889998765422111111111 123455666  4555544321                                47


Q ss_pred             eEEEEeCCCCeEEEecccC-CCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          231 RVLKYDPTTKQTTVLLRNL-QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       231 ~l~~~d~~t~~~~~~~~~~-~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                      .+..||..+++......+. .....+++  +++.++.. ...+.|..+++.
T Consensus       277 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g-~~dg~i~iwd~~  324 (435)
T 1p22_A          277 TIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSG-SSDNTIRLWDIE  324 (435)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEE-ETTSCEEEEETT
T ss_pred             eEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEE-eCCCeEEEEECC
Confidence            8999999887654433322 22233444  56655554 446788888875

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=96.64  E-value=0.12  Score=53.43  Aligned_cols=79  Identities=6%  Similarity=0.005  Sum_probs=48.4

Q ss_pred             eEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCC---------------CeEEEEEeeCCCCcceeeeec--C
Q 015463          231 RVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV---------------GRLHKYWLIGEKAGNLEAFAI--L  293 (406)
Q Consensus       231 ~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~---------------~~i~~~~~~g~~~~~~~~~~~--l  293 (406)
                      .|+.+|.++++.......-....+++++||++.++++....               ..|+++++.++......++..  -
T Consensus       152 ~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~  231 (710)
T 2xdw_A          152 TIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDE  231 (710)
T ss_dssp             EEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTC
T ss_pred             EEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCC
Confidence            69999999988765321112245799999999988876432               248888876433222223322  1


Q ss_pred             CCCCCceEECCCCCEE
Q 015463          294 PGYPDNVRTNEKGEFW  309 (406)
Q Consensus       294 ~g~pd~i~~d~~G~lw  309 (406)
                      +....++.+++||+..
T Consensus       232 ~~~~~~~~~SpDg~~l  247 (710)
T 2xdw_A          232 PKWMGGAELSDDGRYV  247 (710)
T ss_dssp             TTCEEEEEECTTSCEE
T ss_pred             CeEEEEEEEcCCCCEE
Confidence            2222357788999833

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=96.59  E-value=0.14  Score=52.93  Aligned_cols=124  Identities=11%  Similarity=0.025  Sum_probs=70.8

Q ss_pred             EEEEeCCCCeEEEccccc---CCcccccccceEEcCCCCEE-EEeCCCchhhhccccccccccccccCCCCCCCcccCCC
Q 015463          154 LMKVGPEGGLATSLATEA---EGVPLRFTNDLDIDDEGNVY-FTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDT  229 (406)
Q Consensus       154 l~~~d~~~~~~~~l~~~~---~~~~~~~~~~l~~d~dG~ly-~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~  229 (406)
                      |++.+..++..+.+....   .+. .....++.+.+||+.. ++.+..                            +...
T Consensus        96 l~~~~~~~~~~~~l~d~~~~a~~~-~~~~~~~~~SPDG~~la~~~~~~----------------------------G~~~  146 (695)
T 2bkl_A           96 LYWRQGESGQEKVLLDPNGWSKDG-TVSLGTWAVSWDGKKVAFAQKPN----------------------------AADE  146 (695)
T ss_dssp             EEEEESTTSCCEEEECGGGSSSSS-CEEEEEEEECTTSSEEEEEEEET----------------------------TCSC
T ss_pred             EEEEcCCCCCcEEEEchHHhccCC-CEEEEEEEECCCCCEEEEEECCC----------------------------CCce
Confidence            688887666655554321   111 1235678899999643 332110                            2223


Q ss_pred             CeEEEEeCCCCeEEEecccCCCc--ceEEEecCCCEEEEEeCCC------------CeEEEEEeeCCCCcceeeeecCCC
Q 015463          230 GRVLKYDPTTKQTTVLLRNLQFP--NGLSLSKDKSFFVFCEGSV------------GRLHKYWLIGEKAGNLEAFAILPG  295 (406)
Q Consensus       230 g~l~~~d~~t~~~~~~~~~~~~~--ngi~l~~d~~~l~v~~t~~------------~~i~~~~~~g~~~~~~~~~~~l~g  295 (406)
                      ..|+.+|.++++... ...+...  .++++++|++.++++....            ..|+++++.++......++. .++
T Consensus       147 ~~i~v~dl~tg~~~~-~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~-~~~  224 (695)
T 2bkl_A          147 AVLHVIDVDSGEWSK-VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE-RTG  224 (695)
T ss_dssp             CEEEEEETTTCCBCS-SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC-CCC
T ss_pred             EEEEEEECCCCCCcC-CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe-cCC
Confidence            579999999887530 1122222  5799999999888876532            34888887654322222332 222


Q ss_pred             ---CCCceEECCCCCE
Q 015463          296 ---YPDNVRTNEKGEF  308 (406)
Q Consensus       296 ---~pd~i~~d~~G~l  308 (406)
                         .-.++..++||+.
T Consensus       225 ~~~~~~~~~~SpDG~~  240 (695)
T 2bkl_A          225 DPTTFLQSDLSRDGKY  240 (695)
T ss_dssp             CTTCEEEEEECTTSCC
T ss_pred             CCEEEEEEEECCCCCE
Confidence               2225677888873

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.57  E-value=0.79  Score=46.51  Aligned_cols=43  Identities=12%  Similarity=0.146  Sum_probs=28.7

Q ss_pred             cceEEEEEECC-CCCEEEEEECCCCCeeeceeEEEEeCCEEEEecC
Q 015463          351 RLHAMAVKYSP-EGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSV  395 (406)
Q Consensus       351 ~~~~~v~~~d~-~g~~~~~~~~~~g~~~~~~s~~~~~~g~Ly~Gs~  395 (406)
                      ...+.+.+||. +|+++..+.-+.+.....  .+.+.+|++|+...
T Consensus       491 t~dg~l~A~D~~tG~~lW~~~l~~g~~~~P--~~y~~~G~qyv~~~  534 (599)
T 1w6s_A          491 TLDGYLKARDSDTGDLLWKFKIPSGAIGYP--MTYTHKGTQYVAIY  534 (599)
T ss_dssp             CTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTEEEEEEE
T ss_pred             CCCCeEEEEECCCCCEEEEeeCCCCcEecc--EEEEeCCEEEEEEE
Confidence            44556888885 499999987665543222  22368999998764

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.51  E-value=0.46  Score=49.13  Aligned_cols=43  Identities=14%  Similarity=0.260  Sum_probs=28.2

Q ss_pred             cceEEEEEECC-CCCEEEEEECCCCCeeeceeEEEEeCCEEEEecC
Q 015463          351 RLHAMAVKYSP-EGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSV  395 (406)
Q Consensus       351 ~~~~~v~~~d~-~g~~~~~~~~~~g~~~~~~s~~~~~~g~Ly~Gs~  395 (406)
                      ...+.+.++|. +|+++..+..+.+.....+  ..+.+|+.|+...
T Consensus       493 t~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~--ty~~~G~qyv~~~  536 (689)
T 1yiq_A          493 SADGRVIAYAADTGEKLWEQPAASGVMAAPV--TYSVDGEQYVTFM  536 (689)
T ss_dssp             CTTSEEEEEETTTCCEEEEEECSSCCCSCCE--EEEETTEEEEEEE
T ss_pred             CCCCcEEEEECCCCccceeeeCCCCcccCce--EEEECCEEEEEEE
Confidence            44556888885 4999998876655432222  2368899998754

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.49  E-value=0.53  Score=43.62  Aligned_cols=183  Identities=13%  Similarity=0.176  Sum_probs=94.3

Q ss_pred             cceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463           71 PESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (406)
Q Consensus        71 pe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va  148 (406)
                      ..+|++.+++. +|+....|.|++-...  .|+......                   ........+|.+++  +++|++
T Consensus        38 ~~~v~~~~~~~-~~~~G~~g~i~~s~DgG~tW~~~~~~~-------------------~~~~~~~~~i~~~~--~~~~~~   95 (327)
T 2xbg_A           38 ILDMSFIDRHH-GWLVGVNATLMETRDGGQTWEPRTLVL-------------------DHSDYRFNSVSFQG--NEGWIV   95 (327)
T ss_dssp             EEEEEESSSSC-EEEEETTTEEEEESSTTSSCEECCCCC-------------------SCCCCEEEEEEEET--TEEEEE
T ss_pred             EEEEEECCCCc-EEEEcCCCeEEEeCCCCCCCeECCCCC-------------------CCCCccEEEEEecC--CeEEEE
Confidence            45666666666 6665567878776443  565542110                   00011245788874  678887


Q ss_pred             eCCCcEEEEeCCCCe-EEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463          149 DAYFGLMKVGPEGGL-ATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK  227 (406)
Q Consensus       149 d~~~gl~~~d~~~~~-~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  227 (406)
                      ....+|++ ..++|+ .+.+.... ..+ ..+..+++.+++.+|+....                               
T Consensus        96 g~~g~i~~-S~DgG~tW~~~~~~~-~~~-~~~~~i~~~~~~~~~~~~~~-------------------------------  141 (327)
T 2xbg_A           96 GEPPIMLH-TTDGGQSWSQIPLDP-KLP-GSPRLIKALGNGSAEMITNV-------------------------------  141 (327)
T ss_dssp             EETTEEEE-ESSTTSSCEECCCCT-TCS-SCEEEEEEEETTEEEEEETT-------------------------------
T ss_pred             ECCCeEEE-ECCCCCCceECcccc-CCC-CCeEEEEEECCCCEEEEeCC-------------------------------
Confidence            65555666 455443 33332110 001 12456777667888877532                               


Q ss_pred             CCCeEEEEeCCCCeEEEecccC-CCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeec-CCCCCCceEECCC
Q 015463          228 DTGRVLKYDPTTKQTTVLLRNL-QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI-LPGYPDNVRTNEK  305 (406)
Q Consensus       228 ~~g~l~~~d~~t~~~~~~~~~~-~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~-l~g~pd~i~~d~~  305 (406)
                        |.|++-.-.....+...... ....++++++++..+ ++.. .+.+++-+-.+.  ...+.... .+.....++++++
T Consensus       142 --g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~-~~g~-~G~~~~S~d~gG--~tW~~~~~~~~~~~~~~~~~~~  215 (327)
T 2xbg_A          142 --GAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYV-AVSS-RGSFYSTWEPGQ--TAWEPHNRTTSRRLHNMGFTPD  215 (327)
T ss_dssp             --CCEEEESSTTSSEEEEECSCCCCEEEEEECTTSCEE-EEET-TSSEEEEECTTC--SSCEEEECCSSSCEEEEEECTT
T ss_pred             --ccEEEEcCCCCCCEEeecCCCcceEEEEEcCCCcEE-EEEC-CCcEEEEeCCCC--CceeECCCCCCCccceeEECCC
Confidence              45666543333444443222 123467788877644 3333 456776542211  11111111 1112235667888


Q ss_pred             CCEEEEEccC
Q 015463          306 GEFWVAIHCR  315 (406)
Q Consensus       306 G~lwv~~~~~  315 (406)
                      |++|++...+
T Consensus       216 g~~~~~~~~G  225 (327)
T 2xbg_A          216 GRLWMIVNGG  225 (327)
T ss_dssp             SCEEEEETTT
T ss_pred             CCEEEEeCCc
Confidence            9999887654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=96.48  E-value=0.46  Score=48.90  Aligned_cols=152  Identities=12%  Similarity=0.021  Sum_probs=82.2

Q ss_pred             ceEEEcCCCCeeEEEecCCE-------------EEEEeCC-ce---eEEEeecCCCccccCCCCCcccccccCCcCCcce
Q 015463           72 ESMAFDPLGRGPYTGVADGR-------------ILFWDGL-KW---TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPL  134 (406)
Q Consensus        72 e~i~~d~~g~~ly~g~~~g~-------------I~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  134 (406)
                      .++++.+||+.++.+..+..             |++++.. ..   +.+....                    .......
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~--------------------~~~~~~~  230 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERT--------------------GDPTTFL  230 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCC--------------------CCTTCEE
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecC--------------------CCCEEEE
Confidence            57899999987777666543             8888765 11   1111100                    0012245


Q ss_pred             EEEEeCCCCc-EEEEeCCC----cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccc
Q 015463          135 GLRFDKKTGD-LYIADAYF----GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENI  209 (406)
Q Consensus       135 gi~~d~~~g~-L~Vad~~~----gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~  209 (406)
                      ++.+++ +|+ |.++....    .|+.++..+++.+.+......     ...... ++|.+|+.+..             
T Consensus       231 ~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~-----~~~~~~-~~g~l~~~s~~-------------  290 (695)
T 2bkl_A          231 QSDLSR-DGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGA-----KYEVHA-WKDRFYVLTDE-------------  290 (695)
T ss_dssp             EEEECT-TSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSC-----CEEEEE-ETTEEEEEECT-------------
T ss_pred             EEEECC-CCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCc-----eEEEEe-cCCcEEEEECC-------------
Confidence            778888 554 55444333    588887766666655433221     112222 44557777531             


Q ss_pred             cccccccCCCCCCCcccCCCCeEEEEeCCCCe---EEEecccC--CCcceEEEecCCCEEEEEeCC--CCeEEEEEeeC
Q 015463          210 PLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQ---TTVLLRNL--QFPNGLSLSKDKSFFVFCEGS--VGRLHKYWLIG  281 (406)
Q Consensus       210 ~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~---~~~~~~~~--~~~ngi~l~~d~~~l~v~~t~--~~~i~~~~~~g  281 (406)
                                      ..+.++|+.+|.++++   .+.+....  ....+++++ ++ .++++...  ..+|+.++++|
T Consensus       291 ----------------~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g  351 (695)
T 2bkl_A          291 ----------------GAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GG-HLSLEYLKDATSEVRVATLKG  351 (695)
T ss_dssp             ----------------TCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TT-EEEEEEEETTEEEEEEEETTC
T ss_pred             ----------------CCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCC
Confidence                            2235789999988765   24443221  223566776 34 45555432  34677776543

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=96.45  E-value=0.11  Score=49.73  Aligned_cols=150  Identities=8%  Similarity=-0.009  Sum_probs=87.4

Q ss_pred             EcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-EEEEeCCCcE
Q 015463           76 FDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYIADAYFGL  154 (406)
Q Consensus        76 ~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-L~Vad~~~gl  154 (406)
                      +.++++.+++++.+|.|..|+....+.+.....                  ....+....+++++ +++ |..+...+.|
T Consensus       178 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------------------~~h~~~v~~~~~s~-~~~~l~s~~~dg~i  238 (437)
T 3gre_A          178 VNEEKSLLVALTNLSRVIIFDIRTLERLQIIEN------------------SPRHGAVSSICIDE-ECCVLILGTTRGII  238 (437)
T ss_dssp             ECSSCEEEEEEETTSEEEEEETTTCCEEEEEEC------------------CGGGCCEEEEEECT-TSCEEEEEETTSCE
T ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEcc------------------CCCCCceEEEEECC-CCCEEEEEcCCCeE
Confidence            345688899999999999999762111111100                  00124467899998 555 5556655669


Q ss_pred             EEEeCCCCeEEEcccccCCcccccccceEE----cCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCC
Q 015463          155 MKVGPEGGLATSLATEAEGVPLRFTNDLDI----DDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTG  230 (406)
Q Consensus       155 ~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~----d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g  230 (406)
                      ..+|..+++....... ..  ...+..++.    .++|.+.++.+.                                +|
T Consensus       239 ~iwd~~~~~~~~~~~~-~~--~~~v~~~~~~~~~s~~~~~l~s~~~--------------------------------dg  283 (437)
T 3gre_A          239 DIWDIRFNVLIRSWSF-GD--HAPITHVEVCQFYGKNSVIVVGGSS--------------------------------KT  283 (437)
T ss_dssp             EEEETTTTEEEEEEBC-TT--CEEEEEEEECTTTCTTEEEEEEEST--------------------------------TE
T ss_pred             EEEEcCCccEEEEEec-CC--CCceEEEEeccccCCCccEEEEEcC--------------------------------CC
Confidence            9999887754321111 11  113556643    345656655432                                46


Q ss_pred             eEEEEeCCCCeEEEecccC---------------------------CCcceEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463          231 RVLKYDPTTKQTTVLLRNL---------------------------QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  281 (406)
Q Consensus       231 ~l~~~d~~t~~~~~~~~~~---------------------------~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g  281 (406)
                      .|..||..+++......+.                           .....++++ +++ ++++....+.|..+++..
T Consensus       284 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~-~l~s~~~d~~i~~wd~~~  359 (437)
T 3gre_A          284 FLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK-ILLTDEATSSIVMFSLNE  359 (437)
T ss_dssp             EEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE-EEEEEGGGTEEEEEETTC
T ss_pred             cEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce-EEEecCCCCeEEEEECCC
Confidence            7888888877644322110                           112457787 664 445556667888888763

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=96.20  E-value=0.25  Score=51.45  Aligned_cols=77  Identities=10%  Similarity=0.047  Sum_probs=44.9

Q ss_pred             CeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCC-------------CeEEEEEeeCCCCcceeeeecCCCC
Q 015463          230 GRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV-------------GRLHKYWLIGEKAGNLEAFAILPGY  296 (406)
Q Consensus       230 g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~-------------~~i~~~~~~g~~~~~~~~~~~l~g~  296 (406)
                      ..|+.+|.++++.......-....++++++| +.++++....             .+|+++++.++......++. .++.
T Consensus       189 ~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~-~~~~  266 (741)
T 1yr2_A          189 RTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFA-TPEL  266 (741)
T ss_dssp             EEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEEC-CTTC
T ss_pred             EEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEec-cCCC
Confidence            3599999999876443111111247889999 8888876432             25888887543222222332 2222


Q ss_pred             ---CCceEECCCCCE
Q 015463          297 ---PDNVRTNEKGEF  308 (406)
Q Consensus       297 ---pd~i~~d~~G~l  308 (406)
                         -.++..++||+.
T Consensus       267 ~~~~~~~~~SpDG~~  281 (741)
T 1yr2_A          267 PKRGHGASVSSDGRW  281 (741)
T ss_dssp             TTCEEEEEECTTSCE
T ss_pred             CeEEEEEEECCCCCE
Confidence               235667889973

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.19  E-value=0.054  Score=47.53  Aligned_cols=105  Identities=15%  Similarity=0.017  Sum_probs=65.2

Q ss_pred             ceEEEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccc---cCCcccccccceEEcCCCCEEEEeCCCchhhhccccccc
Q 015463          133 PLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATE---AEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENI  209 (406)
Q Consensus       133 p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~---~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~  209 (406)
                      ...|+|++ +|.||.. ....|+++++.++.-..+...   ....-.+....+.+|++|.||..+               
T Consensus        43 ~~~laf~P-~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav~---------------  105 (236)
T 1tl2_A           43 FKFLFLSP-GGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAVS---------------  105 (236)
T ss_dssp             CSEEEECT-TSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEEE---------------
T ss_pred             ceeEEECC-CccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEeC---------------
Confidence            45799999 9999999 456799999866322222111   000012235678999999999984               


Q ss_pred             cccccccCCCCCCCcccCCCCeEEEEeCCCCeE-------EEec-ccCCCcceEEEecCCCEEEEEeCCCCeEEE
Q 015463          210 PLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQT-------TVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHK  276 (406)
Q Consensus       210 ~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~-------~~~~-~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~  276 (406)
                                         +|.|++.++-+..-       ..+. .+-..-.-|.++|||. ||.+.  .+++++
T Consensus       106 -------------------dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~--dg~lyr  158 (236)
T 1tl2_A          106 -------------------KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH--GQQFYK  158 (236)
T ss_dssp             -------------------TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE--TTEEEE
T ss_pred             -------------------CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce-EEEEe--CCcEEe
Confidence                               27899999844211       1111 1112235678888885 66665  456766

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.12  E-value=1.5  Score=45.03  Aligned_cols=48  Identities=8%  Similarity=0.102  Sum_probs=31.4

Q ss_pred             EEEEEECC-CCCEEEEEECCCCCeeeceeEEEEeCCEEEEecCCCCeEEEEeC
Q 015463          354 AMAVKYSP-EGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDL  405 (406)
Q Consensus       354 ~~v~~~d~-~g~~~~~~~~~~g~~~~~~s~~~~~~g~Ly~Gs~~~~~i~~~~~  405 (406)
                      +.+.++|. +|+++..+......   ....+...+|.||+|+. ...+..+|.
T Consensus       438 g~l~A~D~~tG~~~W~~~~~~~~---~~~~~~t~gg~vf~g~~-dg~l~a~d~  486 (668)
T 1kv9_A          438 GALLAWDPVKQKAAWKVPYPTHW---NGGTLSTAGNLVFQGTA-AGQMHAYSA  486 (668)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSC---CCCEEEETTTEEEEECT-TSEEEEEET
T ss_pred             ceEEEEeCCCCcEEEEccCCCCC---cCceeEeCCCEEEEECC-cccchhhhh
Confidence            67889996 58887776532211   12334456889999975 667777764

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.10  E-value=1.4  Score=44.61  Aligned_cols=50  Identities=10%  Similarity=0.030  Sum_probs=31.7

Q ss_pred             ceEEEEEECCC-CCEEEEEECCCCCeeeceeEEEEeCCEEEEecCCCCeEEEEeC
Q 015463          352 LHAMAVKYSPE-GKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDL  405 (406)
Q Consensus       352 ~~~~v~~~d~~-g~~~~~~~~~~g~~~~~~s~~~~~~g~Ly~Gs~~~~~i~~~~~  405 (406)
                      ..+.+.++|.. |+++......  ... ....+...+|.+|+|+. ...|..+|.
T Consensus       451 ~~G~l~A~D~~tG~~~W~~~~~--~~~-~~g~~~tagg~vf~gt~-dg~l~A~D~  501 (599)
T 1w6s_A          451 GLGQIKAYNAITGDYKWEKMER--FAV-WGGTMATAGDLVFYGTL-DGYLKARDS  501 (599)
T ss_dssp             CCEEEEEECTTTCCEEEEEEES--SCC-CSBCEEETTTEEEEECT-TSEEEEEET
T ss_pred             CcCeEEEEECCCCCEEeEecCC--CCc-cCcceEecCCEEEEECC-CCeEEEEEC
Confidence            34678899964 8888776432  111 11224457889999986 566776764

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.08  E-value=0.68  Score=46.81  Aligned_cols=43  Identities=21%  Similarity=0.287  Sum_probs=28.9

Q ss_pred             cceEEEEEECC-CCCEEEEEECCCCCeeeceeEEEEeCCEEEEecC
Q 015463          351 RLHAMAVKYSP-EGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSV  395 (406)
Q Consensus       351 ~~~~~v~~~d~-~g~~~~~~~~~~g~~~~~~s~~~~~~g~Ly~Gs~  395 (406)
                      ...+.+.+||. +|+++..+..+.+.....  .+.+.+|++|++..
T Consensus       504 ~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P--~~y~~~G~qYv~~~  547 (582)
T 1flg_A          504 TGDGYFKAFDAKSGKELWKFQTGSGIVSPP--ITWEQDGEQYLGVT  547 (582)
T ss_dssp             CTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTEEEEEEE
T ss_pred             CCCCcEEEEECCCCCEEEEecCCCCcccCc--eEEEECCEEEEEEE
Confidence            44456888885 599999988766532211  22358999999854

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=96.07  E-value=0.087  Score=52.71  Aligned_cols=194  Identities=9%  Similarity=-0.056  Sum_probs=108.0

Q ss_pred             cceEEEcCC------CCeeEEEecCCEEEEEeCC-ce-e--EEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeC
Q 015463           71 PESMAFDPL------GRGPYTGVADGRILFWDGL-KW-T--DFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK  140 (406)
Q Consensus        71 pe~i~~d~~------g~~ly~g~~~g~I~~~~~~-~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~  140 (406)
                      ..++++.++      ++.|.+++.||.|..|+.. .. .  ...... . +           ........+...++++.+
T Consensus       210 V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~-~-p-----------~~~l~~h~~~v~sv~~s~  276 (524)
T 2j04_B          210 VWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCE-K-P-----------SLTLSLADSLITTFDFLS  276 (524)
T ss_dssp             EEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCC-S-C-----------SEEECCTTTCEEEEEESS
T ss_pred             EEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeec-C-c-----------eEEEEcCCCCEEEEEecC
Confidence            467888875      5667889999999999865 10 0  000000 0 0           000111124456888887


Q ss_pred             CCCcEEEEeCCCcEEEEeCCCCeE--EEcccccCCcccccccce--EEcCCC-CEEEEeCCCchhhhccccccccccccc
Q 015463          141 KTGDLYIADAYFGLMKVGPEGGLA--TSLATEAEGVPLRFTNDL--DIDDEG-NVYFTDSSTNYQRRQMQKENIPLQLCS  215 (406)
Q Consensus       141 ~~g~L~Vad~~~gl~~~d~~~~~~--~~l~~~~~~~~~~~~~~l--~~d~dG-~ly~t~~~~~~~~~~~~~~~~~~~~~~  215 (406)
                       ++.|..+...+.|..+|.+++..  ..+...     ...++++  +..++| ++.++.+.                   
T Consensus       277 -~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H-----~~~V~sv~~~~s~~g~~~laS~S~-------------------  331 (524)
T 2j04_B          277 -PTTVVCGFKNGFVAEFDLTDPEVPSFYDQVH-----DSYILSVSTAYSDFEDTVVSTVAV-------------------  331 (524)
T ss_dssp             -SSEEEEEETTSEEEEEETTBCSSCSEEEECS-----SSCEEEEEEECCTTSCCEEEEEET-------------------
T ss_pred             -CCeEEEEeCCCEEEEEECCCCCCceEEeecc-----cccEEEEEEEcCCCCCeEEEEecc-------------------
Confidence             67777787777789999876531  111110     1246677  346677 77776543                   


Q ss_pred             cCCCCCCCcccCCCCeEEEEeCCCCeEE-EecccC--CCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeec
Q 015463          216 SLNDPSPIKITKDTGRVLKYDPTTKQTT-VLLRNL--QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI  292 (406)
Q Consensus       216 e~~~~~~~~~~~~~g~l~~~d~~t~~~~-~~~~~~--~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~  292 (406)
                                   ++.+..+|..+++.. .+....  .....++++||++.+ ++....+.|..+++.....  ...+..
T Consensus       332 -------------D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l-~s~~~d~tv~lwd~~~~~~--~~~l~g  395 (524)
T 2j04_B          332 -------------DGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSY-IYSDGASSLRAVPSRAAFA--VHPLVS  395 (524)
T ss_dssp             -------------TSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEE-EEECSSSEEEEEETTCTTC--CEEEEE
T ss_pred             -------------CCeEEEEECCCCCcccccccccccCcccceEeCCCcCeE-EEeCCCCcEEEEECccccc--ceeeec
Confidence                         477888887665421 111111  124579999999865 4444556777777653211  111221


Q ss_pred             CCCCCCceEECCCCCEEEEEccCCcc
Q 015463          293 LPGYPDNVRTNEKGEFWVAIHCRRSL  318 (406)
Q Consensus       293 l~g~pd~i~~d~~G~lwv~~~~~~~~  318 (406)
                      -.+....++++++|.+.++......+
T Consensus       396 H~~~V~sva~Sp~g~~l~Sgs~Dgtv  421 (524)
T 2j04_B          396 RETTITAIGVSRLHPMVLAGSADGSL  421 (524)
T ss_dssp             CSSCEEEEECCSSCCBCEEEETTTEE
T ss_pred             CCCceEEEEeCCCCCeEEEEECCCEE
Confidence            12223456778888866665444443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.04  E-value=0.84  Score=47.03  Aligned_cols=82  Identities=18%  Similarity=0.232  Sum_probs=49.2

Q ss_pred             CCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee-cCCC--CCCceEECCC
Q 015463          229 TGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPG--YPDNVRTNEK  305 (406)
Q Consensus       229 ~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~-~l~g--~pd~i~~d~~  305 (406)
                      .|.|..+|+.|++..--...-...++..++.++..+|+. +..+.++.++.+.   ++. +.. .++.  ...-+....+
T Consensus       456 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g-~~dg~l~a~D~~t---G~~-lw~~~~~~~~~~~p~~y~~~  530 (677)
T 1kb0_A          456 FGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQG-TADGRLVAYHAAT---GEK-LWEAPTGTGVVAAPSTYMVD  530 (677)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTT---CCE-EEEEECSSCCCSCCEEEEET
T ss_pred             ccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEE-CCCCcEEEEECCC---Cce-eeeeeCCCCcccCCEEEEeC
Confidence            378999999999764332222223455677778778776 5678999998653   221 111 2221  1122444468


Q ss_pred             CCEEEEEccC
Q 015463          306 GEFWVAIHCR  315 (406)
Q Consensus       306 G~lwv~~~~~  315 (406)
                      |+.|++...+
T Consensus       531 G~~~v~~~~G  540 (677)
T 1kb0_A          531 GRQYVSVAVG  540 (677)
T ss_dssp             TEEEEEEEEC
T ss_pred             CEEEEEEecc
Confidence            8999887555

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=96.00  E-value=0.072  Score=53.87  Aligned_cols=123  Identities=21%  Similarity=0.393  Sum_probs=74.4

Q ss_pred             cCcccCcceEEEcC-CCCeeEEEec----------------------CCEEEEEeCC---------ceeEEEeecCCCcc
Q 015463           65 LNQIQGPESMAFDP-LGRGPYTGVA----------------------DGRILFWDGL---------KWTDFAFTSNNRSE  112 (406)
Q Consensus        65 ~~~~~gpe~i~~d~-~g~~ly~g~~----------------------~g~I~~~~~~---------~~~~~~~~~~~~~~  112 (406)
                      ...+..||.+.+++ +|. +|+.+.                      .|.|+++..+         .|..+.........
T Consensus       380 AT~f~RpEgi~~~p~~g~-vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~  458 (592)
T 3zwu_A          380 ATRMDRPEWIVVSPKDGQ-VYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVH  458 (592)
T ss_dssp             CCCEECEEEEEECTTTCC-EEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTS
T ss_pred             eEEEeccceeEEcCCCCE-EEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCcccc
Confidence            34678999999996 566 666533                      2789999743         22333322110000


Q ss_pred             ccCCCCCc-ccccccCCcCCcceEEEEeCCCCcEEEEeCC-------------CcEEEEeCCCCeEEEcccccCCccccc
Q 015463          113 LCNPKPIA-TSYLKNEHICGRPLGLRFDKKTGDLYIADAY-------------FGLMKVGPEGGLATSLATEAEGVPLRF  178 (406)
Q Consensus       113 ~~~~~~~~-~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~-------------~gl~~~d~~~~~~~~l~~~~~~~~~~~  178 (406)
                        ...... ............|-+|+|++ .|+|||++..             +.++.+++.++++..+.....+.   .
T Consensus       459 --~~~~~~~~~~~~~~~~f~~PDNL~fd~-~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~ga---E  532 (592)
T 3zwu_A          459 --AGTPKGGSSNITPQNMFNSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGC---E  532 (592)
T ss_dssp             --TTSGGGCCTTCCTTTCCCCEEEEEECT-TCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTC---E
T ss_pred             --cccccccccccCCCCCccCCcceEECC-CCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCc---c
Confidence              000000 00000112346689999999 8999999764             24788899989888876543333   4


Q ss_pred             ccceEEcCCC-CEEEEe
Q 015463          179 TNDLDIDDEG-NVYFTD  194 (406)
Q Consensus       179 ~~~l~~d~dG-~ly~t~  194 (406)
                      +.++++.+|| .||+.-
T Consensus       533 ~TG~~fspDg~tlfvni  549 (592)
T 3zwu_A          533 VTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             EEEEEECTTSSEEEEEE
T ss_pred             CcCeeECCCCCEEEEEE
Confidence            5678999998 566664

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=95.92  E-value=0.68  Score=47.71  Aligned_cols=110  Identities=14%  Similarity=0.178  Sum_probs=62.3

Q ss_pred             eEEEEeCCCCc-EEEEeCC----CcEEEEeCCCC--eEEEcccccCCcccccccceEEcC-CCCEEEEeCCCchhhhccc
Q 015463          134 LGLRFDKKTGD-LYIADAY----FGLMKVGPEGG--LATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQ  205 (406)
Q Consensus       134 ~gi~~d~~~g~-L~Vad~~----~gl~~~d~~~~--~~~~l~~~~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~  205 (406)
                      .++.+++ +|+ |++....    ..|+.+|.+++  ..+.+......     .... +++ ++.+||.+..         
T Consensus       237 ~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~-----~~~~-~~~~g~~l~~~t~~---------  300 (693)
T 3iuj_A          237 VGATVTE-DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA-----DVSL-VDNKGSTLYLLTNR---------  300 (693)
T ss_dssp             EEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS-----CEEE-EEEETTEEEEEECT---------
T ss_pred             EEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc-----eEEE-EeccCCEEEEEECC---------
Confidence            4677888 565 4444321    36888887655  44444322111     1111 333 4578877632         


Q ss_pred             cccccccccccCCCCCCCcccCCCCeEEEEeCCCCeE---EEecccCCCcceEEEecCCCEEEEEeCCC--CeEEEEEee
Q 015463          206 KENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQT---TVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLI  280 (406)
Q Consensus       206 ~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~---~~~~~~~~~~ngi~l~~d~~~l~v~~t~~--~~i~~~~~~  280 (406)
                                          ....++|+.+|.+++..   +.+...-...  +.++++++.++++....  .+|++++++
T Consensus       301 --------------------~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~--~~~s~~g~~lv~~~~~~g~~~l~~~d~~  358 (693)
T 3iuj_A          301 --------------------DAPNRRLVTVDAANPGPAHWRDLIPERQQV--LTVHSGSGYLFAEYMVDATARVEQFDYE  358 (693)
T ss_dssp             --------------------TCTTCEEEEEETTSCCGGGCEEEECCCSSC--EEEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred             --------------------CCCCCEEEEEeCCCCCccccEEEecCCCCE--EEEEEECCEEEEEEEECCeeEEEEEECC
Confidence                                22347899999987653   4444322222  27888898887775433  367777766


Q ss_pred             C
Q 015463          281 G  281 (406)
Q Consensus       281 g  281 (406)
                      |
T Consensus       359 g  359 (693)
T 3iuj_A          359 G  359 (693)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=95.88  E-value=0.97  Score=42.50  Aligned_cols=50  Identities=20%  Similarity=0.205  Sum_probs=33.7

Q ss_pred             CCeEEEEeCCCCeEEEecccCC-Ccc-eEEEecCCCEEEEEeCCCCeEEEEEe
Q 015463          229 TGRVLKYDPTTKQTTVLLRNLQ-FPN-GLSLSKDKSFFVFCEGSVGRLHKYWL  279 (406)
Q Consensus       229 ~g~l~~~d~~t~~~~~~~~~~~-~~n-gi~l~~d~~~l~v~~t~~~~i~~~~~  279 (406)
                      ++.+..+|..+++......+.. ... .++++||++.|+ +....+.|+.++.
T Consensus       304 DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~La-SGS~D~TIklWd~  355 (356)
T 2w18_A          304 SGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLL-AGQKDGNIFVYHY  355 (356)
T ss_dssp             TSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEE-EECTTSCEEEEEE
T ss_pred             CCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEE-EEECCCcEEEecC
Confidence            4779999999998655444332 233 489999998764 4455667776653

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=95.85  E-value=0.94  Score=42.85  Aligned_cols=72  Identities=8%  Similarity=0.039  Sum_probs=46.0

Q ss_pred             cceEEEcC--------CCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC
Q 015463           71 PESMAFDP--------LGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK  141 (406)
Q Consensus        71 pe~i~~d~--------~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~  141 (406)
                      -.++++.+        +|++|.+++.|+.|..||.. .-.......                     ....+..++|.++
T Consensus       139 v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~---------------------~~~~v~~v~~~p~  197 (393)
T 4gq1_A          139 VNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYP---------------------LSSPGISVQFRPS  197 (393)
T ss_dssp             EEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEE---------------------CSSCEEEEEEETT
T ss_pred             eEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecC---------------------CCCCcEEEEECCC
Confidence            46777765        78878889999999999854 211111110                     0233568899984


Q ss_pred             CCc-EEEEeCCCcEEEEeCCCCe
Q 015463          142 TGD-LYIADAYFGLMKVGPEGGL  163 (406)
Q Consensus       142 ~g~-L~Vad~~~gl~~~d~~~~~  163 (406)
                      +.+ |..+...+.|..+|..+++
T Consensus       198 ~~~~l~~~~~d~~v~~wd~~t~~  220 (393)
T 4gq1_A          198 NPNQLIVGERNGNIRIFDWTLNL  220 (393)
T ss_dssp             EEEEEEEEETTSEEEEEETTCCC
T ss_pred             CCceEEecCCCCEEEEEECCCCc
Confidence            334 5555555668888987764

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=95.84  E-value=0.07  Score=53.39  Aligned_cols=154  Identities=8%  Similarity=-0.048  Sum_probs=91.9

Q ss_pred             CcceEEEcCCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEE--EEeCCCC-cE
Q 015463           70 GPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGL--RFDKKTG-DL  145 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi--~~d~~~g-~L  145 (406)
                      ...++++.+++ .|.+|+.||.|..|+.. ........                    ....+...++  ++.+ +| ++
T Consensus       268 ~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~--------------------~~H~~~V~sv~~~~s~-~g~~~  325 (524)
T 2j04_B          268 LITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYD--------------------QVHDSYILSVSTAYSD-FEDTV  325 (524)
T ss_dssp             CEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEE--------------------ECSSSCEEEEEEECCT-TSCCE
T ss_pred             CEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEe--------------------ecccccEEEEEEEcCC-CCCeE
Confidence            34678887665 59999999999999975 21110000                    0012335566  4555 55 55


Q ss_pred             EEE-eCCCcEEEEeCCCCeEE-EcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCC
Q 015463          146 YIA-DAYFGLMKVGPEGGLAT-SLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPI  223 (406)
Q Consensus       146 ~Va-d~~~gl~~~d~~~~~~~-~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  223 (406)
                      +++ ...+.+..+|..+++.. .+.....   ...+..+++.++|..+++.+.                           
T Consensus       326 laS~S~D~tvklWD~~~~~~~~~~~~~~~---~~~v~~v~fsp~~~~l~s~~~---------------------------  375 (524)
T 2j04_B          326 VSTVAVDGYFYIFNPKDIATTKTTVSRFR---GSNLVPVVYCPQIYSYIYSDG---------------------------  375 (524)
T ss_dssp             EEEEETTSEEEEECGGGHHHHCEEEEECS---CCSCCCEEEETTTTEEEEECS---------------------------
T ss_pred             EEEeccCCeEEEEECCCCCcccccccccc---cCcccceEeCCCcCeEEEeCC---------------------------
Confidence            444 44456888887654321 1111111   113567899999988777543                           


Q ss_pred             cccCCCCeEEEEeCCCCeE-EEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463          224 KITKDTGRVLKYDPTTKQT-TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  281 (406)
Q Consensus       224 ~~~~~~g~l~~~d~~t~~~-~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g  281 (406)
                           ++.+..+|..++.. ..+.......+.|+++||++.+. +....+.|..+++.+
T Consensus       376 -----d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~-Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          376 -----ASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVL-AGSADGSLIITNAAR  428 (524)
T ss_dssp             -----SSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCE-EEETTTEEECCBSCS
T ss_pred             -----CCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEE-EEECCCEEEEEechH
Confidence                 35677888877653 33333333457899999998764 444567787777653

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=95.69  E-value=0.96  Score=46.69  Aligned_cols=81  Identities=20%  Similarity=0.281  Sum_probs=48.0

Q ss_pred             CeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee-cCCC--CCCceEECCCC
Q 015463          230 GRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPG--YPDNVRTNEKG  306 (406)
Q Consensus       230 g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~-~l~g--~pd~i~~d~~G  306 (406)
                      |.|..+|++||+..--.......++-.++..+..+|+. +..+.|+.++.+.   |+ +++. .++.  ...-+....+|
T Consensus       455 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g-t~dg~l~a~D~~t---G~-~lw~~~~~~~~~~~p~ty~~~G  529 (689)
T 1yiq_A          455 GKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEG-SADGRVIAYAADT---GE-KLWEQPAASGVMAAPVTYSVDG  529 (689)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTT---CC-EEEEEECSSCCCSCCEEEEETT
T ss_pred             eeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEE-CCCCcEEEEECCC---Cc-cceeeeCCCCcccCceEEEECC
Confidence            78999999999764332221122333566667667665 5678899998653   32 2221 2221  11225545789


Q ss_pred             CEEEEEccC
Q 015463          307 EFWVAIHCR  315 (406)
Q Consensus       307 ~lwv~~~~~  315 (406)
                      +.||+...+
T Consensus       530 ~qyv~~~~G  538 (689)
T 1yiq_A          530 EQYVTFMAG  538 (689)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEec
Confidence            999997654

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=95.37  E-value=1.4  Score=39.32  Aligned_cols=51  Identities=6%  Similarity=-0.033  Sum_probs=24.8

Q ss_pred             CCeEEEEeCCCCeEE-----EecccCCCcceEEEecCCCEEEEE-e-CCCCeEEEEEe
Q 015463          229 TGRVLKYDPTTKQTT-----VLLRNLQFPNGLSLSKDKSFFVFC-E-GSVGRLHKYWL  279 (406)
Q Consensus       229 ~g~l~~~d~~t~~~~-----~~~~~~~~~ngi~l~~d~~~l~v~-~-t~~~~i~~~~~  279 (406)
                      +|.+..+|..+++..     ...........++.++++..++.. . ...+.|..++.
T Consensus       171 d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~  228 (318)
T 4ggc_A          171 DNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV  228 (318)
T ss_dssp             TSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEET
T ss_pred             CcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEec
Confidence            467888887765421     111111223456677765544433 2 22344555554

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=95.27  E-value=2.6  Score=43.26  Aligned_cols=82  Identities=21%  Similarity=0.288  Sum_probs=47.4

Q ss_pred             CCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee-cCC-C-CCCceEECCC
Q 015463          229 TGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILP-G-YPDNVRTNEK  305 (406)
Q Consensus       229 ~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~-~l~-g-~pd~i~~d~~  305 (406)
                      .|.|+.+|+.|++..--........+..+...+..+|+. +..+.|+.++.+.   ++ .++. .++ + ...-+....+
T Consensus       437 ~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g-~~dg~l~a~d~~t---G~-~l~~~~~~~~~~~~p~~~~~~  511 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQG-TAAGQMHAYSADK---GE-ALWQFEAQSGIVAAPMTFELA  511 (668)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTT---CC-EEEEEECSSCCCSCCEEEEET
T ss_pred             cceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEE-CCcccchhhhhhc---Ch-hheEecCCCCcccCceEEEEC
Confidence            378999999999864322222223444555567777776 5678899988652   22 1111 121 1 1122333457


Q ss_pred             CCEEEEEccC
Q 015463          306 GEFWVAIHCR  315 (406)
Q Consensus       306 G~lwv~~~~~  315 (406)
                      |++|++...+
T Consensus       512 G~~yva~~~G  521 (668)
T 1kv9_A          512 GRQYVAIMAG  521 (668)
T ss_dssp             TEEEEEEEEC
T ss_pred             CEEEEEEEec
Confidence            8999987654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=95.03  E-value=2.1  Score=41.26  Aligned_cols=105  Identities=10%  Similarity=-0.088  Sum_probs=63.8

Q ss_pred             cCcceEEEcCC-CCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEE
Q 015463           69 QGPESMAFDPL-GRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (406)
Q Consensus        69 ~gpe~i~~d~~-g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~V  147 (406)
                      ....++++.++ ++.+.+++.+|.|..||...........                    .....+..+++++++..|++
T Consensus       150 ~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~--------------------~~~~~v~~v~wspdg~~las  209 (434)
T 2oit_A          150 GMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL--------------------PSTVAVTSVCWSPKGKQLAV  209 (434)
T ss_dssp             GSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE--------------------CGGGCEEEEEECTTSSCEEE
T ss_pred             CceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeecc--------------------CCCCceeEEEEcCCCCEEEE
Confidence            45678999987 7777789999999999876212111110                    01234678999984445777


Q ss_pred             EeCCCcEEEEeCCCCeEEEcccccC--CcccccccceEEcCCCCEEEE
Q 015463          148 ADAYFGLMKVGPEGGLATSLATEAE--GVPLRFTNDLDIDDEGNVYFT  193 (406)
Q Consensus       148 ad~~~gl~~~d~~~~~~~~l~~~~~--~~~~~~~~~l~~d~dG~ly~t  193 (406)
                      +...+.|..+|.++.....+.....  ......+.++..++++.+.++
T Consensus       210 gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~  257 (434)
T 2oit_A          210 GKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIV  257 (434)
T ss_dssp             EETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEE
T ss_pred             EcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEE
Confidence            7776779999988443333321111  000124567777777655544

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=94.93  E-value=2.3  Score=39.37  Aligned_cols=181  Identities=10%  Similarity=0.014  Sum_probs=91.1

Q ss_pred             cCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463           69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va  148 (406)
                      ....+++++++|+.+.+|+.+ ++..|+.+.........                      ......+.+....+.+.++
T Consensus        20 ~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~   76 (355)
T 3vu4_A           20 NPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQE----------------------MRHLSKVRMLHRTNYVAFV   76 (355)
T ss_dssp             CCCCEEEECTTSSEEEEECSS-EEEEEEETTEEEEEEEE----------------------CSCCCEEEECTTSSEEEEE
T ss_pred             CceEEEEECCCCCEEEEEcCC-EEEEEecCCcceeeeee----------------------cCCeEEEEEcCCCCEEEEE
Confidence            355789999999966666655 57777755222211110                      0012234455523334343


Q ss_pred             eC-CCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463          149 DA-YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK  227 (406)
Q Consensus       149 d~-~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  227 (406)
                      .. .+.|..+|..+++...... ..    ..+.++.+++++ +.++.                                 
T Consensus        77 ~~~d~~v~iWd~~~~~~~~~~~-~~----~~v~~v~~~~~~-~~~~~---------------------------------  117 (355)
T 3vu4_A           77 TGVKEVVHIWDDVKKQDVSRIK-VD----APVKDLFLSREF-IVVSY---------------------------------  117 (355)
T ss_dssp             CSSTTEEEEEETTTTEEEEEEE-CS----SCEEEEEECSSE-EEEEE---------------------------------
T ss_pred             ECCccEEEEEECCCCcEEEEEE-CC----CceEEEEEcCCE-EEEEE---------------------------------
Confidence            33 3578889988776433211 11    135566776654 33332                                 


Q ss_pred             CCCeEEEEeCCCC-eEEEecccCCCcce-EEEecCCCEEEEE-eCCCCeEEEEEeeCCCCc-----c-----eee-eecC
Q 015463          228 DTGRVLKYDPTTK-QTTVLLRNLQFPNG-LSLSKDKSFFVFC-EGSVGRLHKYWLIGEKAG-----N-----LEA-FAIL  293 (406)
Q Consensus       228 ~~g~l~~~d~~t~-~~~~~~~~~~~~ng-i~l~~d~~~l~v~-~t~~~~i~~~~~~g~~~~-----~-----~~~-~~~l  293 (406)
                       .+.+..||..++ +.......   +.+ +++++  +.+.++ ....+.|..+++...+.-     .     ... ...+
T Consensus       118 -~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~  191 (355)
T 3vu4_A          118 -GDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLI  191 (355)
T ss_dssp             -TTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEE
T ss_pred             -cCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEE
Confidence             156888887765 21111111   333 44655  455554 455677888887642100     0     000 1112


Q ss_pred             CCC---CCceEECCCCCEEEEEccCCc
Q 015463          294 PGY---PDNVRTNEKGEFWVAIHCRRS  317 (406)
Q Consensus       294 ~g~---pd~i~~d~~G~lwv~~~~~~~  317 (406)
                      .+.   ...++++++|++.++......
T Consensus       192 ~~h~~~v~~~~~s~~g~~l~s~s~d~~  218 (355)
T 3vu4_A          192 KAHTNPIKMVRLNRKSDMVATCSQDGT  218 (355)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTCS
T ss_pred             EccCCceEEEEECCCCCEEEEEeCCCC
Confidence            222   345678899987777655443

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=94.37  E-value=1.7  Score=41.03  Aligned_cols=52  Identities=13%  Similarity=0.150  Sum_probs=35.8

Q ss_pred             CCCeEEEEeCCCCeEEEe-cccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463          228 DTGRVLKYDPTTKQTTVL-LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  281 (406)
Q Consensus       228 ~~g~l~~~d~~t~~~~~~-~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g  281 (406)
                      .+|.|..+|..+++.... ...-.....++++|||+.|.++.  .+++..+.+.|
T Consensus       337 ~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as--~~Gv~lvrL~g  389 (393)
T 4gq1_A          337 QHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIAT--EGSVLLTRLMG  389 (393)
T ss_dssp             TTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEE--SSEEEEEEEGG
T ss_pred             CCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEe--CCCeEEEEEeC
Confidence            358899999887754332 22223457899999999887664  46777777654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=94.10  E-value=5.5  Score=40.08  Aligned_cols=83  Identities=11%  Similarity=0.106  Sum_probs=46.3

Q ss_pred             CCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee-cCCC--CCCceEECC
Q 015463          228 DTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPG--YPDNVRTNE  304 (406)
Q Consensus       228 ~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~-~l~g--~pd~i~~d~  304 (406)
                      ..|.|+.+|+.||+..--........+-.+...+..+|+. +..+.|+.++.+.   |+ ++.. .+++  ...-+....
T Consensus       464 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g-~~dg~l~A~D~~t---G~-~lW~~~~~~g~~a~P~~y~~  538 (582)
T 1flg_A          464 HVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTG-TGDGYFKAFDAKS---GK-ELWKFQTGSGIVSPPITWEQ  538 (582)
T ss_dssp             CSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEE-CTTSEEEEEETTT---CC-EEEEEECSSCCCSCCEEEEE
T ss_pred             CcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEE-CCCCcEEEEECCC---CC-EEEEecCCCCcccCceEEEE
Confidence            3588999999998764222111112222233345566665 5568898888652   22 1221 2221  112255557


Q ss_pred             CCCEEEEEccC
Q 015463          305 KGEFWVAIHCR  315 (406)
Q Consensus       305 ~G~lwv~~~~~  315 (406)
                      +|+.||+...+
T Consensus       539 ~G~qYv~~~~G  549 (582)
T 1flg_A          539 DGEQYLGVTVG  549 (582)
T ss_dssp             TTEEEEEEEEC
T ss_pred             CCEEEEEEEcc
Confidence            89999998765

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=92.94  E-value=7.6  Score=39.47  Aligned_cols=71  Identities=17%  Similarity=0.120  Sum_probs=41.6

Q ss_pred             EEEcCCCCeeEEEe-cCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCc-ceEEEEeCCCCcEEEEe
Q 015463           74 MAFDPLGRGPYTGV-ADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGR-PLGLRFDKKTGDLYIAD  149 (406)
Q Consensus        74 i~~d~~g~~ly~g~-~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~gi~~d~~~g~L~Vad  149 (406)
                      .++..+|.++.+|. .+..+.++|..  .|+......                      ..| -.+.++-+ +|.|||.-
T Consensus       248 ~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~----------------------~~R~~~s~~~~~-dg~iyv~G  304 (656)
T 1k3i_A          248 ISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQ----------------------VARGYQSSATMS-DGRVFTIG  304 (656)
T ss_dssp             EEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCS----------------------SCCSSCEEEECT-TSCEEEEC
T ss_pred             ccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCC----------------------ccccccceEEec-CCeEEEEe
Confidence            45556777444554 23468888865  565542111                      111 13445554 68888875


Q ss_pred             CC-------CcEEEEeCCCCeEEEc
Q 015463          150 AY-------FGLMKVGPEGGLATSL  167 (406)
Q Consensus       150 ~~-------~gl~~~d~~~~~~~~l  167 (406)
                      ..       ..+.++|+++++.+.+
T Consensus       305 G~~~~~~~~~~~e~yd~~t~~W~~~  329 (656)
T 1k3i_A          305 GSWSGGVFEKNGEVYSPSSKTWTSL  329 (656)
T ss_dssp             CCCCSSSCCCCEEEEETTTTEEEEE
T ss_pred             CcccCCcccccceEeCCCCCcceeC
Confidence            41       3489999998877665

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=92.52  E-value=4.8  Score=41.83  Aligned_cols=76  Identities=5%  Similarity=0.031  Sum_probs=43.9

Q ss_pred             CeEEEEeCCCC-eEEEecccCC-CcceEEEecCCCEEEEEeCCC----CeEEEEEeeCCCCcceeeeec-CCCCCCceEE
Q 015463          230 GRVLKYDPTTK-QTTVLLRNLQ-FPNGLSLSKDKSFFVFCEGSV----GRLHKYWLIGEKAGNLEAFAI-LPGYPDNVRT  302 (406)
Q Consensus       230 g~l~~~d~~t~-~~~~~~~~~~-~~ngi~l~~d~~~l~v~~t~~----~~i~~~~~~g~~~~~~~~~~~-l~g~pd~i~~  302 (406)
                      ..|+.+|.+++ +.  +...+. ...++++++|++.++++....    ..|+++++.++......++.. ...+--++..
T Consensus       201 ~~l~v~dl~~g~~~--l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~  278 (751)
T 2xe4_A          201 YTIEFKRISDPSQT--IADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYK  278 (751)
T ss_dssp             EEEEEEETTCTTCC--CCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEE
T ss_pred             EEEEEEECCCCCEe--CCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEE
Confidence            35999999887 52  111111 124688999998887765421    368888876543322334432 1122234567


Q ss_pred             CCCCC
Q 015463          303 NEKGE  307 (406)
Q Consensus       303 d~~G~  307 (406)
                      ++||+
T Consensus       279 SpDg~  283 (751)
T 2xe4_A          279 AADTN  283 (751)
T ss_dssp             CTTSS
T ss_pred             CCCCC
Confidence            88887

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=92.31  E-value=0.087  Score=49.99  Aligned_cols=49  Identities=10%  Similarity=0.001  Sum_probs=24.8

Q ss_pred             CeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          230 GRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       230 g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                      |.|+.+|.++|+..--... .......+..++. +|++.+..+.|+.++.+
T Consensus        19 g~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~   67 (369)
T 2hz6_A           19 GSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSK   67 (369)
T ss_dssp             SEEEEEETTTCCEEEEEEC-CCSCCCC-----C-CEEECTTTCCEEEC---
T ss_pred             CEEEEEECCCCCEEEEecC-CCceecceEcCCC-EEEEeCCCCEEEEEECC
Confidence            7899999988876432222 1222222334453 55555556788888864

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=91.80  E-value=6.1  Score=37.55  Aligned_cols=134  Identities=10%  Similarity=0.063  Sum_probs=81.9

Q ss_pred             ccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEE
Q 015463           68 IQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (406)
Q Consensus        68 ~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~V  147 (406)
                      +..+..+++  +|+.|+++ .++.|..|+......-....     .+               ......+..-+  .++.+
T Consensus        87 lp~V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~-----~~---------------~~~v~~i~~~~--p~~av  141 (388)
T 1xip_A           87 IPDVIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVT-----SF---------------EKPVFQLKNVN--NTLVI  141 (388)
T ss_dssp             CTTEEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEE-----EC---------------SSCEEEEEECS--SEEEE
T ss_pred             CCCeeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccc-----ee---------------ecceeeEEecC--CCEEE
Confidence            445788899  77878998 78899999865111100000     00               01123444433  35777


Q ss_pred             EeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463          148 ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK  227 (406)
Q Consensus       148 ad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  227 (406)
                      ++..+.|+.+|.+++....+        ...+.+++..++| +.++..                                
T Consensus       142 ~~~dG~L~v~dl~~~~~~~~--------~~~Vs~v~WSpkG-~~vg~~--------------------------------  180 (388)
T 1xip_A          142 LNSVNDLSALDLRTKSTKQL--------AQNVTSFDVTNSQ-LAVLLK--------------------------------  180 (388)
T ss_dssp             EETTSEEEEEETTTCCEEEE--------EESEEEEEECSSE-EEEEET--------------------------------
T ss_pred             EECCCCEEEEEccCCccccc--------cCCceEEEEcCCc-eEEEEc--------------------------------
Confidence            77777888998886655432        1247789999999 555542                                


Q ss_pred             CCCeEEEEeCCCCeE---EEe------cc---cCCCcceEEEecCCCEEEEEe
Q 015463          228 DTGRVLKYDPTTKQT---TVL------LR---NLQFPNGLSLSKDKSFFVFCE  268 (406)
Q Consensus       228 ~~g~l~~~d~~t~~~---~~~------~~---~~~~~ngi~l~~d~~~l~v~~  268 (406)
                       +|.+..|++++++.   ..+      .+   .-.....|++.+++.++.+..
T Consensus       181 -dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          181 -DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             -TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             -CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence             36788888887774   233      11   123345788888887765543

>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}

Probab=90.03  E-value=20  Score=37.25  Aligned_cols=114  Identities=12%  Similarity=0.149  Sum_probs=59.3

Q ss_pred             CcceEEEcCCC-CeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC-CCcE
Q 015463           70 GPESMAFDPLG-RGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK-TGDL  145 (406)
Q Consensus        70 gpe~i~~d~~g-~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~-~g~L  145 (406)
                      ...+|++++.+ +.+|+++..|+|+|-+..  .|+.+......  ... +        ...........|++|+. .+.+
T Consensus        22 ~i~~i~~~p~~~~~~y~~~~~ggv~~S~DgG~tW~~~~~~~~~--~~~-~--------~~~~~~~~~~~ia~dp~~~~~~   90 (763)
T 3a0f_A           22 FISGLVAHPTEKDLIYARTDIGGTYRWNAAKWEWEPITDFIIN--NAL-A--------GNGANLLGTESIALDPHNPDRL   90 (763)
T ss_dssp             CEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCBT--TCS-S--------SCCCCCCSEEEEECCTTCTTCE
T ss_pred             ceeEEEeCCCCCCEEEEEeccCcEEEECCCCCCeeECccCccc--ccc-C--------CCcccccceeEEEECCCCCCEE
Confidence            34678888754 569999988999998765  66665321000  000 0        00000122467888872 3679


Q ss_pred             EEEeC-------CCcEEEEeCCCCeEEEcccccC--Cc-cc-ccccceEEcC--CCCEEEEe
Q 015463          146 YIADA-------YFGLMKVGPEGGLATSLATEAE--GV-PL-RFTNDLDIDD--EGNVYFTD  194 (406)
Q Consensus       146 ~Vad~-------~~gl~~~d~~~~~~~~l~~~~~--~~-~~-~~~~~l~~d~--dG~ly~t~  194 (406)
                      |++..       ..+|++=+-.+...+.+.....  +. +. .....|++++  .+.+|++.
T Consensus        91 ~~~~g~~~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~  152 (763)
T 3a0f_A           91 YLAQGDYVQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGS  152 (763)
T ss_dssp             EEEECSCTTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEEC
T ss_pred             EEEecccccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEe
Confidence            99764       2456654433333333321110  00 00 0123578875  36788875

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=89.15  E-value=23  Score=36.86  Aligned_cols=108  Identities=14%  Similarity=0.126  Sum_probs=58.1

Q ss_pred             cceEEEcCC-CCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC-CCcEE
Q 015463           71 PESMAFDPL-GRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK-TGDLY  146 (406)
Q Consensus        71 pe~i~~d~~-g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~-~g~L~  146 (406)
                      ..+|++++. .+.+|+++..|+|+|-+..  .|+.+.... .               ...........|++++. .+.+|
T Consensus        17 i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~-~---------------~~~~~~~~i~~ia~dp~~~~~i~   80 (789)
T 1sqj_A           17 ITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFI-E---------------AQDMNIMGTESIALDPNNPDRLY   80 (789)
T ss_dssp             EEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTC-C---------------GGGGGGCSEEEEEEETTEEEEEE
T ss_pred             EEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCC-C---------------cccccCCceeEEEECCCCCCEEE
Confidence            456778764 3459999999999999765  676542110 0               00000123567888872 25789


Q ss_pred             EEeCC------CcEEEEeCCCCeEEEcccccC--C-ccc-ccccceEEcCC--CCEEEEe
Q 015463          147 IADAY------FGLMKVGPEGGLATSLATEAE--G-VPL-RFTNDLDIDDE--GNVYFTD  194 (406)
Q Consensus       147 Vad~~------~gl~~~d~~~~~~~~l~~~~~--~-~~~-~~~~~l~~d~d--G~ly~t~  194 (406)
                      ++...      .+|++=+-.+...+.+.....  + .+. ..+..+++++.  +.+|++.
T Consensus        81 ~~~g~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~  140 (789)
T 1sqj_A           81 LAQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGT  140 (789)
T ss_dssp             EEECSCTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEEC
T ss_pred             EEeCccCCCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEe
Confidence            98643      456655433333443322111  0 000 12346788763  4677765

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=85.89  E-value=16  Score=34.58  Aligned_cols=153  Identities=10%  Similarity=0.013  Sum_probs=81.3

Q ss_pred             CcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEe
Q 015463           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad  149 (406)
                      ....+++.+..++++++..++ +..++.+...........   .++..       ......+ +..|+||  +..|+|+ 
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~---~~~~~-------~~~~lp~-V~~l~fd--~~~L~v~-  103 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDST---PLTFK-------WEKEIPD-VIFVCFH--GDQVLVS-  103 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSC---CCCCS-------EEEECTT-EEEEEEE--TTEEEEE-
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccc---cccce-------EEeeCCC-eeEEEEC--CCEEEEE-
Confidence            346778888888777887765 555764411100000000   00000       0001123 7788883  6789999 


Q ss_pred             CCCcEEEEeCCCCeE-EEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCC
Q 015463          150 AYFGLMKVGPEGGLA-TSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKD  228 (406)
Q Consensus       150 ~~~gl~~~d~~~~~~-~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  228 (406)
                      ...+|..||..+-.. .... ... .   .++++..-+. ++.+.+.                                 
T Consensus       104 ~~~~l~v~dv~sl~~~~~~~-~~~-~---~v~~i~~~~p-~~av~~~---------------------------------  144 (388)
T 1xip_A          104 TRNALYSLDLEELSEFRTVT-SFE-K---PVFQLKNVNN-TLVILNS---------------------------------  144 (388)
T ss_dssp             ESSEEEEEESSSTTCEEEEE-ECS-S---CEEEEEECSS-EEEEEET---------------------------------
T ss_pred             cCCcEEEEEchhhhccCccc-eee-c---ceeeEEecCC-CEEEEEC---------------------------------
Confidence            557899998654321 1110 000 1   1223222211 2333332                                 


Q ss_pred             CCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCC
Q 015463          229 TGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE  282 (406)
Q Consensus       229 ~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~  282 (406)
                      +|.|+.+|.++++...+.   .....++++++|  +.+. ...+.+..|..++.
T Consensus       145 dG~L~v~dl~~~~~~~~~---~~Vs~v~WSpkG--~~vg-~~dg~i~~~~~~~~  192 (388)
T 1xip_A          145 VNDLSALDLRTKSTKQLA---QNVTSFDVTNSQ--LAVL-LKDRSFQSFAWRNG  192 (388)
T ss_dssp             TSEEEEEETTTCCEEEEE---ESEEEEEECSSE--EEEE-ETTSCEEEEEEETT
T ss_pred             CCCEEEEEccCCcccccc---CCceEEEEcCCc--eEEE-EcCCcEEEEcCCCc
Confidence            478999998877765543   345689999999  3333 33577788877653

>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}

Probab=84.94  E-value=19  Score=37.38  Aligned_cols=158  Identities=13%  Similarity=0.033  Sum_probs=78.4

Q ss_pred             eEEEcC-CCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeC-CCCcEEEE
Q 015463           73 SMAFDP-LGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK-KTGDLYIA  148 (406)
Q Consensus        73 ~i~~d~-~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~-~~g~L~Va  148 (406)
                      .|++++ +.+.+|+++ +|.|++-...  .|+.+....+.    +               .....-|.+.+ +++.||++
T Consensus       592 ~i~~d~~~~~~~y~g~-~g~v~~S~DgG~tW~~~~~~lp~----~---------------~~~~~~i~~~~~~~~~l~~~  651 (763)
T 3a0f_A          592 GIAADRVQANTFYVYV-EGDFFVSTDGGKSYTKKGNGLPC----C---------------WTYTGTPVTSNLRAGELWVS  651 (763)
T ss_dssp             CEEECSSSTTCEEEEE-TTEEEEESSTTSBCEEECBTSCC----S---------------SCCCEEEEECSSSTTCEEEE
T ss_pred             eEEEeccCCCEEEEEc-CCCEEEEeCCCcCccccccCCCc----c---------------cCccccEEECCCCCCcEEEE
Confidence            677775 344588884 6778776433  56655211100    0               00011155554 36789999


Q ss_pred             eCCCcEEEEeCCCCeEEEcccccCCccc-ccccceEE-cC-CCCEEEEe-CCCchhhhccccccccccccccCCCCCCCc
Q 015463          149 DAYFGLMKVGPEGGLATSLATEAEGVPL-RFTNDLDI-DD-EGNVYFTD-SSTNYQRRQMQKENIPLQLCSSLNDPSPIK  224 (406)
Q Consensus       149 d~~~gl~~~d~~~~~~~~l~~~~~~~~~-~~~~~l~~-d~-dG~ly~t~-~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  224 (406)
                      ...++|++-+-.+...+.+......... ..-..+++ +. ...||+.. ..                            
T Consensus       652 ~~~~~l~~S~D~G~tW~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~G~~~----------------------------  703 (763)
T 3a0f_A          652 VKGVGIYHSTDFGNTFTALAGSGSSLNPAVFSIGAPQTPNATETLFLWGIPS----------------------------  703 (763)
T ss_dssp             ETTTEEEEESSTTSBCEECTTBTTTBEEEEEEEECCSSTTSSCEEEEEEECS----------------------------
T ss_pred             cCCCeEEEEcCCCCCceEccCCCcccccceeEEeeecCCCCCceEEEEEEcc----------------------------
Confidence            8777888876544555554321111100 00001122 22 34677753 10                            


Q ss_pred             ccCCCCeEEEEeCCCCeEEEecc---cCCCcceEEEecCC-CEEEEEeCCCCeEEEEEee
Q 015463          225 ITKDTGRVLKYDPTTKQTTVLLR---NLQFPNGLSLSKDK-SFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       225 ~~~~~g~l~~~d~~t~~~~~~~~---~~~~~ngi~l~~d~-~~l~v~~t~~~~i~~~~~~  280 (406)
                       ....++||+-+-.....+.+..   ++.....|+..+.. ..||++ |....|+.-++.
T Consensus       704 -~~~~~gl~~S~D~G~tW~~~~~~~~~~~~~~~i~~~p~~~~~v~~~-T~GrGi~~g~~~  761 (763)
T 3a0f_A          704 -ASQPEGLYMSTDNGGLWTRLNDDAHNYGGATVISGDPRIYGRVYIG-MNGRGIICAQAL  761 (763)
T ss_dssp             -TTSCSEEEEESSTTSCCEECSCTTCCTBCEEEEEECTTSTTEEEEE-EBSSCEEEEESC
T ss_pred             -cCCCcEEEEeCCCCCCcEeccCccccCCCcceEEeCCCCCCEEEEe-CCCCeEEEEecC
Confidence             1113567776655445555542   22222346666643 357665 445667776654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=84.93  E-value=8.7  Score=39.02  Aligned_cols=114  Identities=14%  Similarity=0.170  Sum_probs=68.1

Q ss_pred             ceEEEEeCCCCcEEEEeCC------------CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchh
Q 015463          133 PLGLRFDKKTGDLYIADAY------------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQ  200 (406)
Q Consensus       133 p~gi~~d~~~g~L~Vad~~------------~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~  200 (406)
                      +...++.+.+|.|||.-..            .-+.++|+.+++.+.+..... ....+..+.++..+|.||+.-..    
T Consensus       188 ~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~-~~~~~~~~~~~~~~g~lyv~GG~----  262 (656)
T 1k3i_A          188 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT-KHDMFCPGISMDGNGQIVVTGGN----  262 (656)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC-SCCCSSCEEEECTTSCEEEECSS----
T ss_pred             ceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCC-CCCCccccccCCCCCCEEEeCCC----
Confidence            4566666436788886321            137889999887655432211 11223445677789999998531    


Q ss_pred             hhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCC---cceEEEecCCCEEEEEeC-CC-----
Q 015463          201 RRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQF---PNGLSLSKDKSFFVFCEG-SV-----  271 (406)
Q Consensus       201 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~---~ngi~l~~d~~~l~v~~t-~~-----  271 (406)
                                                 ....+++||+.+++.+.+. .+..   ..+.++.+|++ +|+..- ..     
T Consensus       263 ---------------------------~~~~v~~yd~~t~~W~~~~-~~~~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~  313 (656)
T 1k3i_A          263 ---------------------------DAKKTSLYDSSSDSWIPGP-DMQVARGYQSSATMSDGR-VFTIGGSWSGGVFE  313 (656)
T ss_dssp             ---------------------------STTCEEEEEGGGTEEEECC-CCSSCCSSCEEEECTTSC-EEEECCCCCSSSCC
T ss_pred             ---------------------------CCCceEEecCcCCceeECC-CCCccccccceEEecCCe-EEEEeCcccCCccc
Confidence                                       1236999999998877653 2222   23455666776 445432 11     


Q ss_pred             CeEEEEEee
Q 015463          272 GRLHKYWLI  280 (406)
Q Consensus       272 ~~i~~~~~~  280 (406)
                      ..+++|++.
T Consensus       314 ~~~e~yd~~  322 (656)
T 1k3i_A          314 KNGEVYSPS  322 (656)
T ss_dssp             CCEEEEETT
T ss_pred             ccceEeCCC
Confidence            458888865

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=83.38  E-value=24  Score=31.37  Aligned_cols=74  Identities=15%  Similarity=0.159  Sum_probs=43.4

Q ss_pred             CCcEEEEeC----------CCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccc
Q 015463          142 TGDLYIADA----------YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPL  211 (406)
Q Consensus       142 ~g~L~Vad~----------~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~  211 (406)
                      ++.|||...          ...++++|+++.+.+.+......   ..-..+++. ++.||+.-....             
T Consensus       149 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~---r~~~~~~~~-~~~i~v~GG~~~-------------  211 (306)
T 3ii7_A          149 NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEA---RKNHGLVFV-KDKIFAVGGQNG-------------  211 (306)
T ss_dssp             TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSC---CBSCEEEEE-TTEEEEECCEET-------------
T ss_pred             CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccch---hhcceEEEE-CCEEEEEeCCCC-------------
Confidence            578888643          23488999999887765422111   111222333 678888642100             


Q ss_pred             cccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec
Q 015463          212 QLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL  246 (406)
Q Consensus       212 ~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~  246 (406)
                                    ......+++||+++++.+.+.
T Consensus       212 --------------~~~~~~~~~yd~~~~~W~~~~  232 (306)
T 3ii7_A          212 --------------LGGLDNVEYYDIKLNEWKMVS  232 (306)
T ss_dssp             --------------TEEBCCEEEEETTTTEEEECC
T ss_pred             --------------CCCCceEEEeeCCCCcEEECC
Confidence                          001245999999998887663

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=81.04  E-value=5.2  Score=37.29  Aligned_cols=17  Identities=12%  Similarity=-0.064  Sum_probs=15.4

Q ss_pred             eeEEEecCCEEEEEeCC
Q 015463           82 GPYTGVADGRILFWDGL   98 (406)
Q Consensus        82 ~ly~g~~~g~I~~~~~~   98 (406)
                      .+|+++.+|.|+-+|.+
T Consensus        12 ~V~v~t~dG~l~Ald~~   28 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRR   28 (339)
T ss_dssp             EEEEEETTSCEEEEETT
T ss_pred             EEEEEeCCCeEEEEECC
Confidence            49999999999999976

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	406
d1v04a_	340	b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PO	3e-27
d1pjxa_	314	b.68.6.1 (A:) Diisopropylfluorophosphatase (phosph	9e-16
d2p4oa1	302	b.68.6.3 (A:4-305) Hypothetical protein All0351 ho	4e-05

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 340

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  108 bits (271), Expect = 3e-27
 Identities = 56/351 (15%), Positives = 96/351 (27%), Gaps = 62/351 (17%)

Query: 66  NQIQGPESMAFDPLGRGPY-TGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYL 124
               G E +   P G     +G+    I+ +D  K         N       +P  +   
Sbjct: 32  GIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLN-----EKEPAVSEL- 85

Query: 125 KNEHICGRPLGLRFDKKTGDLYIADA---YFGLMKVG-----------PEGGLATSLATE 170
             E I        F+      +I D    Y  ++               E   +      
Sbjct: 86  --EIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKT 143

Query: 171 AEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTG 230
                L   ND+      + Y T+    +    ++   + L L                 
Sbjct: 144 IRHKLLPSVNDIVAVGPEHFYATNDHY-FIDPYLKSWEMHLGLA--------------WS 188

Query: 231 RVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAF 290
            V  Y P      V+     F NG+++S D  +    E    ++H Y             
Sbjct: 189 FVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRV 246

Query: 291 AILPGYPDNVRTNEKG-EFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVG 349
                  DN+  +    + WV  H          A  P     L                
Sbjct: 247 LSFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVL---------------- 290

Query: 350 GRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFV 400
            R+  +    S E K+  V  ++ G V++  +      GKL +G+V    +
Sbjct: 291 -RIQDI---LSEEPKVTVVYAEN-GTVLQGSTVAAVYKGKLLIGTVFHKAL 336

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Length = 314

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

 Score = 75.1 bits (183), Expect = 9e-16
 Identities = 61/331 (18%), Positives = 101/331 (30%), Gaps = 58/331 (17%)

Query: 63  KFLNQIQGPESMAFDPLGR-------GPYTGVADGRILFWD--GLKWTDFAFTSNNRSEL 113
           K    I G E   FD  G            G   G IL  D    K T       N    
Sbjct: 12  KVTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVN---- 67

Query: 114 CNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEG 173
                            G P G + D+    L++AD   GL+ V  +G        ++EG
Sbjct: 68  --------------GYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEG 113

Query: 174 VPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVL 233
             ++  ND   D EGN++ T  +         +                  + +  G + 
Sbjct: 114 RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR-----------------SMQEKFGSIY 156

Query: 234 KYDPTTKQTTVLLRNLQFPNGLSLSKD----KSFFVFCEGSVGRLHKYWLIG-EKAGNLE 288
            +    +   V     QFPNG+++           +  E    +L  Y + G  K  N +
Sbjct: 157 CFTTDGQMIQV-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKK 215

Query: 289 AFAILP----GYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHY 344
            +  +P    G  D +  +E     VA        SH+    P      +++    +   
Sbjct: 216 VWGHIPGTHEGGADGMDFDEDNNLLVANWGS----SHIEVFGPDGGQPKMRIRCPFEKPS 271

Query: 345 LIHVGGRLHAMAVKYSPEGKILQVLEDSKGK 375
            +H   +   + V       + +      GK
Sbjct: 272 NLHFKPQTKTIFVTEHENNAVWKFEWQRNGK 302

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

 Score = 42.7 bits (99), Expect = 4e-05
 Identities = 30/242 (12%), Positives = 53/242 (21%), Gaps = 48/242 (19%)

Query: 71  PESMAFDPLGRGPYTGVADGRILFWD-GLKWTDFAFTSNNRSELCNPKPIATSYLKNEHI 129
            E++A  P G    T    G I+           A                         
Sbjct: 30  LENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVE---------------------- 67

Query: 130 CGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN 189
            G+  GL F     DL         + V        ++ T        F N +    +  
Sbjct: 68  -GKVSGLAFTSNG-DLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ 125

Query: 190 VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNL 249
               DS                           I + + +G +    P     +      
Sbjct: 126 YLTADSYRGAIWL--------------------IDVVQPSGSIWLEHPMLA-RSNSESVF 164

Query: 250 QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFW 309
              NGL    +  +          L +  +            +     D+   + +G  +
Sbjct: 165 PAANGLKRFGNFLY--VSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLY 222

Query: 310 VA 311
            A
Sbjct: 223 GA 224

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	406
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.96
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	99.93
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.92
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.91
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.82
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.8
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.73
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.67
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.47
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.45
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.41
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.4
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.31
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.29
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.29
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.21
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.1
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.08
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.79
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.77
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.72
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	98.67
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.55
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.55
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.54
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.49
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.45
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.41
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.37
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.28
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.25
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	98.24
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.21
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.12
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	98.11
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.09
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.08
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.07
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.06
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.04
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	98.0
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	97.99
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	97.98
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	97.88
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	97.87
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	97.86
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	97.82
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	97.8
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	97.78
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	97.77
d1tbga_	340	beta1-subunit of the signal-transducing G protein	97.65
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.65
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.63
d1tbga_	340	beta1-subunit of the signal-transducing G protein	97.6
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.57
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	97.54
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.39
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	97.36
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	97.25
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	97.22
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	97.0
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	96.87
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	96.8
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	96.58
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	96.19
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.08
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	96.07
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	96.04
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	95.76
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	95.55
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	95.48
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	95.27
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.01
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	94.92
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	94.48
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	94.37
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	94.13
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	94.09
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	93.89
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.03
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	91.48
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	90.85
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	90.64
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	89.08
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	88.63
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	86.96
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	86.78
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	86.46
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	86.42
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	85.37
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	85.37
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	85.13
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	84.31

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.96  E-value=1.2e-26  Score=218.43  Aligned_cols=265  Identities=21%  Similarity=0.287  Sum_probs=190.8

Q ss_pred             eccCcccCcceEEEcCCCCeeEEEec--------CCEEEEEeCC-c-eeEEEeecCCCccccCCCCCcccccccCCcCCc
Q 015463           63 KFLNQIQGPESMAFDPLGRGPYTGVA--------DGRILFWDGL-K-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGR  132 (406)
Q Consensus        63 ~~~~~~~gpe~i~~d~~g~~ly~g~~--------~g~I~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (406)
                      ....++.+||++++|++|+ +|+...        +|+|+|++.+ . .+.+...                  ......+.
T Consensus        12 ~v~~~~~g~EGpa~d~dG~-ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~------------------~~~~~~g~   72 (314)
T d1pjxa_          12 KVTEDIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP------------------EVNGYGGI   72 (314)
T ss_dssp             EEECCCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEECC------------------EETTEECC
T ss_pred             EeecCCCCCeEeEEeCCCC-EEEEECccccccccCCEEEEEECCCCcEEEEECC------------------ccccCCCc
Confidence            3456789999999999999 665432        4789999987 3 3333211                  11122567


Q ss_pred             ceEEEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccccccc
Q 015463          133 PLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQ  212 (406)
Q Consensus       133 p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~  212 (406)
                      |.||+++++.+.|||++..+++.+++++++....+....++.+++.||++++|++|++|||+++........        
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~--------  144 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADY--------  144 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCC--------
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccc--------
Confidence            999999994346899998899999999988766655556677888999999999999999997543222111        


Q ss_pred             ccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCC----EEEEEeCCCCeEEEEEeeCC-CCcce
Q 015463          213 LCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKS----FFVFCEGSVGRLHKYWLIGE-KAGNL  287 (406)
Q Consensus       213 ~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~----~l~v~~t~~~~i~~~~~~g~-~~~~~  287 (406)
                               ........|+|++++++ ++...+...+..|||+++++|++    .+|++++..++|++|++..+ .....
T Consensus       145 ---------~~~~~~~~G~v~~~~~d-g~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~  214 (314)
T d1pjxa_         145 ---------TRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK  214 (314)
T ss_dssp             ---------CBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE
T ss_pred             ---------cceeccCCceEEEEeec-CceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCcccccee
Confidence                     00113456899999997 56667777889999999999876    79999999999999998743 23344


Q ss_pred             eeeecC----CCCCCceEECCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCC
Q 015463          288 EAFAIL----PGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEG  363 (406)
Q Consensus       288 ~~~~~l----~g~pd~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g  363 (406)
                      +++.+.    .+.|||+++|++|+|||+.....                                      .|.+||+++
T Consensus       215 ~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g--------------------------------------~I~~~dp~~  256 (314)
T d1pjxa_         215 KVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS--------------------------------------HIEVFGPDG  256 (314)
T ss_dssp             EEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT--------------------------------------EEEEECTTC
T ss_pred             eEEEEccccccccceeeEEecCCcEEEEEcCCC--------------------------------------EEEEEeCCC
Confidence            555543    34699999999999999986541                                      378889885


Q ss_pred             C-EEEEEECCCCCeeeceeEEEE-eC-CEEEEecCCCCeEEEEeCC
Q 015463          364 K-ILQVLEDSKGKVVKAISEVEE-KD-GKLWMGSVLMPFVAVYDLS  406 (406)
Q Consensus       364 ~-~~~~~~~~~g~~~~~~s~~~~-~~-g~Ly~Gs~~~~~i~~~~~~  406 (406)
                      . .+..+..+..    ..+.+.. .+ .+||+.+..++.|.+++++
T Consensus       257 g~~~~~i~~p~~----~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         257 GQPKMRIRCPFE----KPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             BSCSEEEECSSS----CEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CEEEEEEECCCC----CEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            4 4444544322    2333433 23 3799998888999998863

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.93  E-value=5.2e-24  Score=201.78  Aligned_cols=279  Identities=18%  Similarity=0.204  Sum_probs=190.6

Q ss_pred             cCcccCcceEEEcCCCCeeEEEec-------------CCEEEEEeCC----ceeEEEeecCCCccccCCCCCcccccccC
Q 015463           65 LNQIQGPESMAFDPLGRGPYTGVA-------------DGRILFWDGL----KWTDFAFTSNNRSELCNPKPIATSYLKNE  127 (406)
Q Consensus        65 ~~~~~gpe~i~~d~~g~~ly~g~~-------------~g~I~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (406)
                      ++...|||+|+.+++|. +|+++.             .|.|+.+|.+    ....+.....                ...
T Consensus        31 ~g~~~G~EDi~~~~dg~-~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~----------------~~~   93 (340)
T d1v04a_          31 KGIDNGSEDLEILPNGL-AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGN----------------TLD   93 (340)
T ss_dssp             TTCCSCCCEEEECTTSE-EEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECS----------------SSC
T ss_pred             CCCCCCcceEEECCCCc-EEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCC----------------CCC
Confidence            55567999999999987 666653             2778888754    2222222110                011


Q ss_pred             CcCCcceEEEEeC-CCC--cEEEEeCC-C----cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCc-
Q 015463          128 HICGRPLGLRFDK-KTG--DLYIADAY-F----GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTN-  198 (406)
Q Consensus       128 ~~~~~p~gi~~d~-~~g--~L~Vad~~-~----gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~-  198 (406)
                      ...-+|+||.+-. ++|  .|+|..+. .    .++.++.++.+++.. .......+..||++++..+|.+|+|+.... 
T Consensus        94 ~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~-~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~  172 (340)
T d1v04a_          94 ISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHL-KTIRHKLLPSVNDIVAVGPEHFYATNDHYFI  172 (340)
T ss_dssp             GGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEE-EEECCTTCSSEEEEEEEETTEEEEEESCSCC
T ss_pred             CcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEE-eecCCccccCccceEEecCCCEEEecCccCc
Confidence            1234699987632 144  47887763 1    377888777665543 334556678899999999999999975321 


Q ss_pred             hhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEE
Q 015463          199 YQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYW  278 (406)
Q Consensus       199 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~  278 (406)
                      .+...       ..+.+.         +.+.|.++.||++  +.+++.+++.+||||++++|++.+||+++..++|++|+
T Consensus       173 ~~~~~-------~~e~~~---------~~~~g~v~~~~~~--~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~  234 (340)
T d1v04a_         173 DPYLK-------SWEMHL---------GLAWSFVTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYE  234 (340)
T ss_dssp             SHHHH-------HHHHHT---------TCCCEEEEEECSS--CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEE
T ss_pred             Chhhh-------hhhHhh---------cCCceeEEEEcCC--ceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEE
Confidence            11110       122222         5567889999874  56778889999999999999999999999999999999


Q ss_pred             eeCCCCcceeeeecCCCCCCceEECC-CCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEE
Q 015463          279 LIGEKAGNLEAFAILPGYPDNVRTNE-KGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAV  357 (406)
Q Consensus       279 ~~g~~~~~~~~~~~l~g~pd~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~  357 (406)
                      +++.+......+.++++.|||+.+|+ +|.+|++......             ++...-+...           ....++
T Consensus       235 ~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~~p~~~-------------~~~~~~~~~~-----------~~s~v~  290 (340)
T d1v04a_         235 KHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGM-------------RIFFYDAENP-----------PGSEVL  290 (340)
T ss_dssp             ECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESCHH-------------HHHSCCTTSC-----------CCEEEE
T ss_pred             eCCCcccceEEEecCCCCCCccEEecCCCEEEEEECCccc-------------chhhhcccCC-----------CCceeE
Confidence            98765555555667999999999985 7889999864321             1111111100           001233


Q ss_pred             EE----CCCCCEEEEEECCCCCeeeceeEEEEeCCEEEEecCCCCeEEEEeC
Q 015463          358 KY----SPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDL  405 (406)
Q Consensus       358 ~~----d~~g~~~~~~~~~~g~~~~~~s~~~~~~g~Ly~Gs~~~~~i~~~~~  405 (406)
                      ++    .+++++...|++ +|..+...|.+.+++|+||+||+..++| .|+|
T Consensus       291 ri~~~~~~~~~v~~~~~~-~G~~~~~~T~a~~~~g~L~iGs~~~~~l-~C~~  340 (340)
T d1v04a_         291 RIQDILSEEPKVTVVYAE-NGTVLQGSTVAAVYKGKLLIGTVFHKAL-YCDL  340 (340)
T ss_dssp             EEECTTSSSCEEEEEEEE-CSSSSCSEEEEEEETTEEEEEESSSCEE-EEEC
T ss_pred             EEEeccCCCCeEEEEEeC-CCcEeeceEEEEEECCEEEEEeeeCCce-EecC
Confidence            33    345778888876 6777778888999999999999999988 6876

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.92  E-value=1.8e-22  Score=187.91  Aligned_cols=234  Identities=18%  Similarity=0.180  Sum_probs=177.8

Q ss_pred             ccCcceEEEcC-CCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcE
Q 015463           68 IQGPESMAFDP-LGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL  145 (406)
Q Consensus        68 ~~gpe~i~~d~-~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L  145 (406)
                      ..=-|+..+|+ +|+++|++..+++|++++.+ +.......                       ...|.+++++. +|+|
T Consensus        17 ~~LgEgp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~-----------------------~~~~~~i~~~~-dg~l   72 (295)
T d2ghsa1          17 MLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHAL-----------------------PFMGSALAKIS-DSKQ   72 (295)
T ss_dssp             CSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEEC-----------------------SSCEEEEEEEE-TTEE
T ss_pred             CeeeeCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEEC-----------------------CCCcEEEEEec-CCCE
Confidence            33348888985 67788899999999999987 32222111                       23467888887 8999


Q ss_pred             EEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcc
Q 015463          146 YIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKI  225 (406)
Q Consensus       146 ~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  225 (406)
                      |++.. +||+++|+++++++.+.....+.+.+.+|++.+|++|++|+++.....                          
T Consensus        73 ~va~~-~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~--------------------------  125 (295)
T d2ghsa1          73 LIASD-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKA--------------------------  125 (295)
T ss_dssp             EEEET-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTC--------------------------
T ss_pred             EEEEe-CccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccc--------------------------
Confidence            99975 699999999999888776655667778999999999999999853100                          


Q ss_pred             cCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCC---CCcceeeeec---CCCCCCc
Q 015463          226 TKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE---KAGNLEAFAI---LPGYPDN  299 (406)
Q Consensus       226 ~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~---~~~~~~~~~~---l~g~pd~  299 (406)
                      ....|.+++++.  ++.+.+...+..+||+++++|++.+|++++..++|++|+++..   ..+....+.+   ..|.||+
T Consensus       126 ~~~~g~l~~~~~--g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG  203 (295)
T d2ghsa1         126 ETGAGSIYHVAK--GKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDG  203 (295)
T ss_dssp             CTTCEEEEEEET--TEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEE
T ss_pred             cccceeEeeecC--CcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccc
Confidence            223466777764  6777788888999999999999999999999999999998743   2233445553   4677999


Q ss_pred             eEECCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCCEEEEEECCCCCeeec
Q 015463          300 VRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKA  379 (406)
Q Consensus       300 i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~~  379 (406)
                      +++|++|+|||+...+.                                      .|.+||++|+.+..+.-|.-    .
T Consensus       204 ~~vD~~GnlWva~~~~g--------------------------------------~V~~~dp~G~~~~~i~lP~~----~  241 (295)
T d2ghsa1         204 SVCDAEGHIWNARWGEG--------------------------------------AVDRYDTDGNHIARYEVPGK----Q  241 (295)
T ss_dssp             EEECTTSCEEEEEETTT--------------------------------------EEEEECTTCCEEEEEECSCS----B
T ss_pred             eEEcCCCCEEeeeeCCC--------------------------------------ceEEecCCCcEeeEecCCCC----c
Confidence            99999999999986551                                      38889999999999876542    3


Q ss_pred             eeEEEEe---CCEEEEecCC
Q 015463          380 ISEVEEK---DGKLWMGSVL  396 (406)
Q Consensus       380 ~s~~~~~---~g~Ly~Gs~~  396 (406)
                      ++++...   .++||+.|-.
T Consensus       242 ~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         242 TTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             EEEEEEESTTSCEEEEEEBC
T ss_pred             eEEEEEeCCCCCEEEEEECC
Confidence            5555442   3689998753

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.91  E-value=8.3e-23  Score=192.31  Aligned_cols=196  Identities=21%  Similarity=0.268  Sum_probs=149.2

Q ss_pred             cCcceEEEcCCCCeeEEEecCCEEEEEeCC-c-eeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEE
Q 015463           69 QGPESMAFDPLGRGPYTGVADGRILFWDGL-K-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~  146 (406)
                      ...|++++|++|+++|+...+|+|+|++++ . ...+..                      ...+.|.||++++ +|+||
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~----------------------~~~~~p~gla~~~-dG~l~   96 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV----------------------SHKANPAAIKIHK-DGRLF   96 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE----------------------CSSSSEEEEEECT-TSCEE
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEe----------------------CCCCCeeEEEECC-CCCEE
Confidence            455999999999977788899999999987 2 222211                      1135699999998 89999


Q ss_pred             EEeCC-----CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCC
Q 015463          147 IADAY-----FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPS  221 (406)
Q Consensus       147 Vad~~-----~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~  221 (406)
                      |++..     .+++.++..++....+...  ......+|+++++++|++|+++.....                      
T Consensus        97 va~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~nd~~~d~~G~l~vtd~~~~~----------------------  152 (319)
T d2dg1a1          97 VCYLGDFKSTGGIFAATENGDNLQDIIED--LSTAYCIDDMVFDSKGGFYFTDFRGYS----------------------  152 (319)
T ss_dssp             EEECTTSSSCCEEEEECTTSCSCEEEECS--SSSCCCEEEEEECTTSCEEEEECCCBT----------------------
T ss_pred             EEecCCCccceeEEEEcCCCceeeeeccC--CCcccCCcceeEEeccceeeccccccc----------------------
Confidence            99753     3689999988776554322  233567999999999999999864211                      


Q ss_pred             CCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCC-cc---eeeeec--CCC
Q 015463          222 PIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKA-GN---LEAFAI--LPG  295 (406)
Q Consensus       222 ~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~-~~---~~~~~~--l~g  295 (406)
                          ....|.+++++++.+.++.+..++..||||++++|++.+|++++..++|++|+++.... ..   ......  ..+
T Consensus       153 ----~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~  228 (319)
T d2dg1a1         153 ----TNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHE  228 (319)
T ss_dssp             ----TBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSS
T ss_pred             ----ccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCcc
Confidence                22357899999998888888888999999999999999999999999999999874321 11   111111  234


Q ss_pred             CCCceEECCCCCEEEEEccC
Q 015463          296 YPDNVRTNEKGEFWVAIHCR  315 (406)
Q Consensus       296 ~pd~i~~d~~G~lwv~~~~~  315 (406)
                      .|||+++|++|+|||+....
T Consensus       229 ~PdGl~vD~~G~l~Va~~~~  248 (319)
T d2dg1a1         229 GPDSCCIDSDDNLYVAMYGQ  248 (319)
T ss_dssp             EEEEEEEBTTCCEEEEEETT
T ss_pred             ceeeeeEcCCCCEEEEEcCC
Confidence            59999999999999998654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.82  E-value=8e-18  Score=156.33  Aligned_cols=225  Identities=19%  Similarity=0.143  Sum_probs=157.8

Q ss_pred             CcceEEEcCCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463           70 GPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va  148 (406)
                      .||++++++||++++++..+++|++++++ ..+.+...                       .+.|.++++++ +|+|||+
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~-----------------------~~~~~gla~~~-dG~l~v~   84 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATV-----------------------EGKVSGLAFTS-NGDLVAT   84 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEEC-----------------------SSEEEEEEECT-TSCEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcC-----------------------CCCcceEEEcC-CCCeEEE
Confidence            68999999999966667779999999988 44443321                       36699999999 8999999


Q ss_pred             eCC-CcEEEEeCC--CCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcc
Q 015463          149 DAY-FGLMKVGPE--GGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKI  225 (406)
Q Consensus       149 d~~-~gl~~~d~~--~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  225 (406)
                      +.. +.+.+++..  .+....+....   ....+++++++++|++|++++.                             
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~n~i~~~~~g~~~v~~~~-----------------------------  132 (302)
T d2p4oa1          85 GWNADSIPVVSLVKSDGTVETLLTLP---DAIFLNGITPLSDTQYLTADSY-----------------------------  132 (302)
T ss_dssp             EECTTSCEEEEEECTTSCEEEEEECT---TCSCEEEEEESSSSEEEEEETT-----------------------------
T ss_pred             ecCCceEEEEEecccccceeeccccC---CccccceeEEccCCCEEeeccc-----------------------------
Confidence            865 345555543  34444433322   2356899999999999999864                             


Q ss_pred             cCCCCeEEEEeCCCCeEEEec-----------ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCC-CcceeeeecC
Q 015463          226 TKDTGRVLKYDPTTKQTTVLL-----------RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEK-AGNLEAFAIL  293 (406)
Q Consensus       226 ~~~~g~l~~~d~~t~~~~~~~-----------~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~-~~~~~~~~~l  293 (406)
                         .+.++++|+.++......           .....+||++.  +++.+|++++..++|++++..+.. ....+.+.. 
T Consensus       133 ---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~--~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-  206 (302)
T d2p4oa1         133 ---RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKR--FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-  206 (302)
T ss_dssp             ---TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEE--ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-
T ss_pred             ---cccceeeeccCCcceeEecCCccceeeccCcccccccccc--cCCceeeecCCCCeEEeccccccccccccccccC-
Confidence               367999999887765542           12234577765  567899999999999999987542 222233333 


Q ss_pred             CCCCCceEECCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCCEEEEEECCC
Q 015463          294 PGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSK  373 (406)
Q Consensus       294 ~g~pd~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~  373 (406)
                      .+.|+++++|++|++|++.....                                      .|.+++++|+.....+...
T Consensus       207 ~~~pdgia~d~dG~l~va~~~~~--------------------------------------~V~~i~p~G~~~~~~~~~~  248 (302)
T d2p4oa1         207 QTNIDDFAFDVEGNLYGATHIYN--------------------------------------SVVRIAPDRSTTIIAQAEQ  248 (302)
T ss_dssp             SCCCSSEEEBTTCCEEEECBTTC--------------------------------------CEEEECTTCCEEEEECGGG
T ss_pred             CCCCcceEECCCCCEEEEEcCCC--------------------------------------cEEEECCCCCEEEEEecCC
Confidence            34599999999999999986541                                      2788899998877665443


Q ss_pred             CCeeeceeEEEE-----eCCEEEEecCC
Q 015463          374 GKVVKAISEVEE-----KDGKLWMGSVL  396 (406)
Q Consensus       374 g~~~~~~s~~~~-----~~g~Ly~Gs~~  396 (406)
                      +.  ...+.+..     +.++||+++..
T Consensus       249 ~~--~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         249 GV--IGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             TC--TTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CC--CCceEEEEcCCCCCCCEEEEECCC
Confidence            32  23444443     22579998653

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.80  E-value=4.4e-18  Score=154.70  Aligned_cols=234  Identities=21%  Similarity=0.237  Sum_probs=163.9

Q ss_pred             cCcceEEEcCCCCeeEEEe-cCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEE
Q 015463           69 QGPESMAFDPLGRGPYTGV-ADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~-~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~  146 (406)
                      .+|++|++|++|++++++. ..++|.+++.. .......                     ......|.||++++ +|+||
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~---------------------~~~~~~p~gvav~~-~g~i~   71 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP---------------------FNGLYQPQGLAVDG-AGTVY   71 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECC---------------------CCSCCSCCCEEECT-TCCEE
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEec---------------------cCCccCceEEEEcC-CCCEE
Confidence            5899999999999444444 34788888776 2222211                     01135699999998 89999


Q ss_pred             EEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCccc
Q 015463          147 IADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKIT  226 (406)
Q Consensus       147 Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~  226 (406)
                      |++..+++.++...+.......    ...+..|++++++++|++|+++..                              
T Consensus        72 v~d~~~~~i~~~~~~~~~~~~~----~~~~~~p~~iavd~~g~i~v~d~~------------------------------  117 (260)
T d1rwia_          72 VTDFNNRVVTLAAGSNNQTVLP----FDGLNYPEGLAVDTQGAVYVADRG------------------------------  117 (260)
T ss_dssp             EEETTTEEEEECTTCSCCEECC----CCSCCSEEEEEECTTCCEEEEEGG------------------------------
T ss_pred             Eeeeeeceeeeeeeccceeeee----eeeeeecccccccccceeEeeccc------------------------------
Confidence            9999888887776554433322    123467899999999999999853                              


Q ss_pred             CCCCeEEEEeCCCCeEEEe-cccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee-cCCCCCCceEECC
Q 015463          227 KDTGRVLKYDPTTKQTTVL-LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPGYPDNVRTNE  304 (406)
Q Consensus       227 ~~~g~l~~~d~~t~~~~~~-~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~-~l~g~pd~i~~d~  304 (406)
                        ..+++++++.+...... ..++..|++++++++++ +|+++....+|.+++.++.   ....+. ...+.|.++++|+
T Consensus       118 --~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-~~v~~~~~~~i~~~d~~~~---~~~~~~~~~~~~p~gi~~d~  191 (260)
T d1rwia_         118 --NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESN---NQVVLPFTDITAPWGIAVDE  191 (260)
T ss_dssp             --GTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCC-EEEEEGGGTEEEEECTTTC---CEEECCCSSCCSEEEEEECT
T ss_pred             --cccccccccccceeeeeeecccCCcceeeecCCCC-Eeeeccccccccccccccc---eeeeeeccccCCCccceeee
Confidence              25688888876655443 35678899999999886 7899888899999986642   122222 2235689999999


Q ss_pred             CCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCCEEEEEECCCCCeeeceeEEE
Q 015463          305 KGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVE  384 (406)
Q Consensus       305 ~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~~~s~~~  384 (406)
                      +|+|||+.....                                      .++++++++.....+.. .+  +...+.+.
T Consensus       192 ~g~l~vsd~~~~--------------------------------------~i~~~~~~~~~~~~~~~-~~--~~~P~~i~  230 (260)
T d1rwia_         192 AGTVYVTEHNTN--------------------------------------QVVKLLAGSTTSTVLPF-TG--LNTPLAVA  230 (260)
T ss_dssp             TCCEEEEETTTT--------------------------------------EEEEECTTCSCCEECCC-CS--CCCEEEEE
T ss_pred             eeeeeeeecCCC--------------------------------------EEEEEeCCCCeEEEEcc-CC--CCCeEEEE
Confidence            999999986541                                      27778888776555422 22  22344554


Q ss_pred             E-eCCEEEEecCCCCeEEEEeC
Q 015463          385 E-KDGKLWMGSVLMPFVAVYDL  405 (406)
Q Consensus       385 ~-~~g~Ly~Gs~~~~~i~~~~~  405 (406)
                      . .+|+||+....+++|.+++.
T Consensus       231 ~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         231 VDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             ECTTCCEEEEEGGGTEEEEECC
T ss_pred             EeCCCCEEEEECCCCEEEEEeC
Confidence            4 46899999999999998864

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.73  E-value=1.4e-15  Score=139.31  Aligned_cols=243  Identities=16%  Similarity=0.285  Sum_probs=166.9

Q ss_pred             cCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC-cee-EEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCC
Q 015463           65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL-KWT-DFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT  142 (406)
Q Consensus        65 ~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~  142 (406)
                      .+++..|.+|++|++|+++++...+++|.+++.+ .+. .+....                 ........|.+++++.+.
T Consensus        19 ~g~f~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~-----------------~~~~~~~~p~~~~~~~~~   81 (279)
T d1q7fa_          19 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECG-----------------KRDSQLLYPNRVAVVRNS   81 (279)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBS-----------------SSTTCBSSEEEEEEETTT
T ss_pred             CCeECCccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccC-----------------CCcccccccccccccccc
Confidence            3568899999999999955556788999999987 332 231111                 011123458888887645


Q ss_pred             CcEEEEeCC--CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCC
Q 015463          143 GDLYIADAY--FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDP  220 (406)
Q Consensus       143 g~L~Vad~~--~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~  220 (406)
                      +..+++...  ..|.++++.+.....+.    ...+..|.+++++++|++|+++..                        
T Consensus        82 ~~~~~~~~~~~~~i~~~~~~g~~~~~~~----~~~~~~p~~~avd~~G~i~v~~~~------------------------  133 (279)
T d1q7fa_          82 GDIIVTERSPTHQIQIYNQYGQFVRKFG----ATILQHPRGVTVDNKGRIIVVECK------------------------  133 (279)
T ss_dssp             TEEEEEECGGGCEEEEECTTSCEEEEEC----TTTCSCEEEEEECTTSCEEEEETT------------------------
T ss_pred             cccceeccCCccccccccccccceeecC----CCcccccceeccccCCcEEEEeec------------------------
Confidence            666665443  46888888766544432    233567889999999999999864                        


Q ss_pred             CCCcccCCCCeEEEEeCCCCeEEEe--cccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeec--CCCC
Q 015463          221 SPIKITKDTGRVLKYDPTTKQTTVL--LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI--LPGY  296 (406)
Q Consensus       221 ~~~~~~~~~g~l~~~d~~t~~~~~~--~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~--l~g~  296 (406)
                              .+++.+++++...+..+  ...+..+.++++++++ .+|+++...++|++|+.+|..   ...+..  ....
T Consensus       134 --------~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g-~i~v~d~~~~~V~~~d~~G~~---~~~~g~~g~~~~  201 (279)
T d1q7fa_         134 --------VMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEGQY---LRQIGGEGITNY  201 (279)
T ss_dssp             --------TTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTCCE---EEEESCTTTSCS
T ss_pred             --------cceeeEeccCCceeecccccccccccceeeeccce-eEEeeeccccceeeeecCCce---eeeecccccccC
Confidence                    35788899876554444  2446678899998877 588999888999999977532   122221  2235


Q ss_pred             CCceEECCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCCEEEEEECCCCCe
Q 015463          297 PDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKV  376 (406)
Q Consensus       297 pd~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~  376 (406)
                      |.+|++|++|++||+....+                                     ..|..|+++|+.+..+.....  
T Consensus       202 P~giavD~~G~i~Vad~~~~-------------------------------------~~v~~f~~~G~~~~~~~~~~~--  242 (279)
T d1q7fa_         202 PIGVGINSNGEILIADNHNN-------------------------------------FNLTIFTQDGQLISALESKVK--  242 (279)
T ss_dssp             EEEEEECTTCCEEEEECSSS-------------------------------------CEEEEECTTSCEEEEEEESSC--
T ss_pred             CcccccccCCeEEEEECCCC-------------------------------------cEEEEECCCCCEEEEEeCCCC--
Confidence            89999999999999975331                                     136778999999888754321  


Q ss_pred             eeceeEE-EEeCCEEEEecCCCCeEEEEe
Q 015463          377 VKAISEV-EEKDGKLWMGSVLMPFVAVYD  404 (406)
Q Consensus       377 ~~~~s~~-~~~~g~Ly~Gs~~~~~i~~~~  404 (406)
                      ....+.+ ...+|+||+.+. ++.|.++.
T Consensus       243 ~~~p~~vav~~dG~l~V~~~-n~~v~~fr  270 (279)
T d1q7fa_         243 HAQCFDVALMDDGSVVLASK-DYRLYIYR  270 (279)
T ss_dssp             CSCEEEEEEETTTEEEEEET-TTEEEEEE
T ss_pred             CCCEeEEEEeCCCcEEEEeC-CCeEEEEE
Confidence            1133444 456899999985 78887764

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.67  E-value=6.7e-15  Score=133.27  Aligned_cols=187  Identities=21%  Similarity=0.270  Sum_probs=134.6

Q ss_pred             CcccCcceEEEcCCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc
Q 015463           66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (406)
Q Consensus        66 ~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~  144 (406)
                      +++..|++++++++|+ +|+....+.++++... ....+..                     ......|.+|++++ +|+
T Consensus        54 ~~~~~p~gvav~~~g~-i~v~d~~~~~i~~~~~~~~~~~~~---------------------~~~~~~p~~iavd~-~g~  110 (260)
T d1rwia_          54 NGLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQTVLP---------------------FDGLNYPEGLAVDT-QGA  110 (260)
T ss_dssp             CSCCSCCCEEECTTCC-EEEEETTTEEEEECTTCSCCEECC---------------------CCSCCSEEEEEECT-TCC
T ss_pred             CCccCceEEEEcCCCC-EEEeeeeeceeeeeeeccceeeee---------------------eeeeeecccccccc-cce
Confidence            4567899999999999 6665555566666543 2221110                     01135699999998 899


Q ss_pred             EEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCC
Q 015463          145 LYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPI  223 (406)
Q Consensus       145 L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  223 (406)
                      ||+++.. ..+++++..+.......    ...+..|++++++++|++|+++..                           
T Consensus       111 i~v~d~~~~~~~~~~~~~~~~~~~~----~~~~~~p~~i~~~~~g~~~v~~~~---------------------------  159 (260)
T d1rwia_         111 VYVADRGNNRVVKLAAGSKTQTVLP----FTGLNDPDGVAVDNSGNVYVTDTD---------------------------  159 (260)
T ss_dssp             EEEEEGGGTEEEEECTTCSSCEECC----CCSCCSCCEEEECTTCCEEEEEGG---------------------------
T ss_pred             eEeeccccccccccccccceeeeee----ecccCCcceeeecCCCCEeeeccc---------------------------
Confidence            9999976 46888888765443322    123567899999999999999854                           


Q ss_pred             cccCCCCeEEEEeCCCCeEEEec-ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee-cCCCCCCceE
Q 015463          224 KITKDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPGYPDNVR  301 (406)
Q Consensus       224 ~~~~~~g~l~~~d~~t~~~~~~~-~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~-~l~g~pd~i~  301 (406)
                           .++++++|+++.....+. ..+..|+||+++++++ ||+++...++|.+++.++.   ....+. .....|.+|+
T Consensus       160 -----~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~-l~vsd~~~~~i~~~~~~~~---~~~~~~~~~~~~P~~i~  230 (260)
T d1rwia_         160 -----NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGST---TSTVLPFTGLNTPLAVA  230 (260)
T ss_dssp             -----GTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCC-EEEEETTTTEEEEECTTCS---CCEECCCCSCCCEEEEE
T ss_pred             -----cccccccccccceeeeeeccccCCCccceeeeeee-eeeeecCCCEEEEEeCCCC---eEEEEccCCCCCeEEEE
Confidence                 367999999876655553 5678899999999885 8999998999999986542   122222 1224589999


Q ss_pred             ECCCCCEEEEEccC
Q 015463          302 TNEKGEFWVAIHCR  315 (406)
Q Consensus       302 ~d~~G~lwv~~~~~  315 (406)
                      +|++|+|||+....
T Consensus       231 ~d~~g~l~vad~~~  244 (260)
T d1rwia_         231 VDSDRTVYVADRGN  244 (260)
T ss_dssp             ECTTCCEEEEEGGG
T ss_pred             EeCCCCEEEEECCC
Confidence            99999999997654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=9.4e-12  Score=112.45  Aligned_cols=186  Identities=18%  Similarity=0.152  Sum_probs=134.5

Q ss_pred             CcceEEEcCC-CCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEE
Q 015463           70 GPESMAFDPL-GRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (406)
Q Consensus        70 gpe~i~~d~~-g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~  146 (406)
                      .+.+|++|.. +.++|+...++.|++.+.+  ..+.+...                      ..+.|.||++|...++||
T Consensus        37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~----------------------~~~~p~~iAvD~~~~~lY   94 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ----------------------DLGSPEGIALDHLGRTIF   94 (263)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECT----------------------TCCCEEEEEEETTTTEEE
T ss_pred             cEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEe----------------------ccccccEEEEeccCCeEE
Confidence            3567888865 4466777888999999866  22332211                      135699999997678999


Q ss_pred             EEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcC-CCCEEEEeCCCchhhhccccccccccccccCCCCCCCc
Q 015463          147 IADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIK  224 (406)
Q Consensus       147 Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  224 (406)
                      +++.. +.|.++++++...+.+...    .+..|.+|++|+ .|.+|+++..                            
T Consensus        95 ~~d~~~~~I~~~~~dg~~~~~l~~~----~l~~p~~l~vdp~~g~ly~t~~~----------------------------  142 (263)
T d1npea_          95 WTDSQLDRIEVAKMDGTQRRVLFDT----GLVNPRGIVTDPVRGNLYWTDWN----------------------------  142 (263)
T ss_dssp             EEETTTTEEEEEETTSCSCEEEECS----SCSSEEEEEEETTTTEEEEEECC----------------------------
T ss_pred             EeccCCCEEEEEecCCceEEEEecc----cccCCcEEEEecccCcEEEeecC----------------------------
Confidence            99976 5799999987765554322    245688999997 6789999853                            


Q ss_pred             ccCCCCeEEEEeCCCCeEEEe-cccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEEC
Q 015463          225 ITKDTGRVLKYDPTTKQTTVL-LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTN  303 (406)
Q Consensus       225 ~~~~~g~l~~~d~~t~~~~~~-~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d  303 (406)
                        ...++|++.+.++...+.+ ..++..|+|+++++.++.|||++...++|.+++++|..   .+.+......|.+++++
T Consensus       143 --~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~---~~~v~~~~~~P~~lav~  217 (263)
T d1npea_         143 --RDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG---RRKVLEGLQYPFAVTSY  217 (263)
T ss_dssp             --SSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE---EEEEEECCCSEEEEEEE
T ss_pred             --CCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCC---eEEEECCCCCcEEEEEE
Confidence              2235799999876554444 46788999999999999999999988999999987632   22333322358899997


Q ss_pred             CCCCEEEEEccC
Q 015463          304 EKGEFWVAIHCR  315 (406)
Q Consensus       304 ~~G~lwv~~~~~  315 (406)
                       ++.||++....
T Consensus       218 -~~~lYwtd~~~  228 (263)
T d1npea_         218 -GKNLYYTDWKT  228 (263)
T ss_dssp             -TTEEEEEETTT
T ss_pred             -CCEEEEEECCC
Confidence             57899988654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.45  E-value=1.9e-12  Score=120.24  Aligned_cols=156  Identities=15%  Similarity=0.211  Sum_probs=112.1

Q ss_pred             ccCcceEEEcCCCCeeEEEec----------------CCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcC
Q 015463           68 IQGPESMAFDPLGRGPYTGVA----------------DGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHIC  130 (406)
Q Consensus        68 ~~gpe~i~~d~~g~~ly~g~~----------------~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (406)
                      +.+|.++++|++|+ +|++..                .|+|++++++ ....+...                       .
T Consensus       116 ~~~pndl~~d~~G~-lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~-----------------------~  171 (314)
T d1pjxa_         116 MQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTA-----------------------F  171 (314)
T ss_dssp             CBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEE-----------------------E
T ss_pred             cCCCcEEEECCCCC-EEEecCccCcccccccceeccCCceEEEEeecCceeEeeCC-----------------------c
Confidence            45789999999999 666532                3678888876 44333211                       2


Q ss_pred             CcceEEEEeCCCC-----cEEEEeCC-CcEEEEeCCC-CeEEE--cccccCCcccccccceEEcCCCCEEEEeCCCchhh
Q 015463          131 GRPLGLRFDKKTG-----DLYIADAY-FGLMKVGPEG-GLATS--LATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQR  201 (406)
Q Consensus       131 ~~p~gi~~d~~~g-----~L~Vad~~-~gl~~~d~~~-~~~~~--l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~  201 (406)
                      ..|+||++++ ++     .|||++.. +.|++++.+. +.+..  +.....+.....|.++++|++|+||+++..     
T Consensus       172 ~~pNGi~~~~-d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~-----  245 (314)
T d1pjxa_         172 QFPNGIAVRH-MNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG-----  245 (314)
T ss_dssp             SSEEEEEEEE-CTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET-----
T ss_pred             ceeeeeEECC-CCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcC-----
Confidence            4589999987 44     49999987 5688887542 33221  111222333446889999999999999853     


Q ss_pred             hccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEE-ecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          202 RQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTV-LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       202 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~-~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                                                 .++|++|||++++... +......+.++++.+|++.|||++..+++|+++++.
T Consensus       246 ---------------------------~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         246 ---------------------------SSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             ---------------------------TTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             ---------------------------CCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence                                       3789999999876543 333446788999999999999999988999999976

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.41  E-value=1.1e-11  Score=115.22  Aligned_cols=145  Identities=14%  Similarity=0.222  Sum_probs=104.0

Q ss_pred             eEEEEeCCCCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccccccc
Q 015463          134 LGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQ  212 (406)
Q Consensus       134 ~gi~~d~~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~  212 (406)
                      -|+++|+ +|+||++|.. +.|+++++++++........    ...|++|++++||++|+++...               
T Consensus        43 EG~~~D~-~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~----~~~p~gla~~~dG~l~va~~~~---------------  102 (319)
T d2dg1a1          43 EGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFVSH----KANPAAIKIHKDGRLFVCYLGD---------------  102 (319)
T ss_dssp             EEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECS----SSSEEEEEECTTSCEEEEECTT---------------
T ss_pred             EeCEECC-CCCEEEEECCCCEEEEEECCCCeEEEEEeCC----CCCeeEEEECCCCCEEEEecCC---------------
Confidence            4899998 8999999976 56999999987654432221    2358899999999999997531               


Q ss_pred             ccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecc---cCCCcceEEEecCCCEEEEEeCCC------CeEEEEEeeCCC
Q 015463          213 LCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLR---NLQFPNGLSLSKDKSFFVFCEGSV------GRLHKYWLIGEK  283 (406)
Q Consensus       213 ~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~---~~~~~ngi~l~~d~~~l~v~~t~~------~~i~~~~~~g~~  283 (406)
                                   ....++++.+++.++.......   ....+|.++++++|+ +|+++...      +.+++++.++. 
T Consensus       103 -------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~-  167 (319)
T d2dg1a1         103 -------------FKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFR-  167 (319)
T ss_dssp             -------------SSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSC-
T ss_pred             -------------CccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccc-
Confidence                         1224679999999887666543   345688999999996 88887543      35777775542 


Q ss_pred             CcceeeeecCCCCCCceEECCCCC-EEEEEccC
Q 015463          284 AGNLEAFAILPGYPDNVRTNEKGE-FWVAIHCR  315 (406)
Q Consensus       284 ~~~~~~~~~l~g~pd~i~~d~~G~-lwv~~~~~  315 (406)
                        ..+.+.+-...|++|+++++|+ ||++....
T Consensus       168 --~~~~~~~~~~~pnGia~s~dg~~lyvad~~~  198 (319)
T d2dg1a1         168 --TVTPIIQNISVANGIALSTDEKVLWVTETTA  198 (319)
T ss_dssp             --CEEEEEEEESSEEEEEECTTSSEEEEEEGGG
T ss_pred             --eeEEEeeccceeeeeeeccccceEEEecccC
Confidence              2233333224599999999997 99997654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=4.3e-11  Score=108.19  Aligned_cols=192  Identities=14%  Similarity=0.121  Sum_probs=135.6

Q ss_pred             cccCcceEEEcCCC-CeeEEEecCCEEEEEeCCcee---EEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCC
Q 015463           67 QIQGPESMAFDPLG-RGPYTGVADGRILFWDGLKWT---DFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT  142 (406)
Q Consensus        67 ~~~gpe~i~~d~~g-~~ly~g~~~g~I~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~  142 (406)
                      .+..|.+|.+|..+ .++|+....+.|.+.+.+...   ....                   ........|.||++|...
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~-------------------~~~~~~~~p~glAvD~~~   88 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT-------------------VISRDIQAPDGLAVDWIH   88 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE-------------------EECSSCSCCCEEEEETTT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEE-------------------EEeCCCCCcceEEEeecc
Confidence            45677889998654 466777788899988765110   0000                   011123568999999768


Q ss_pred             CcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcC-CCCEEEEeCCCchhhhccccccccccccccCCCC
Q 015463          143 GDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDP  220 (406)
Q Consensus       143 g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~  220 (406)
                      ++||+++.. +.|.++++++.....+...    ....|.+|++|+ +|.||+++.+                        
T Consensus        89 ~~lY~~d~~~~~I~v~~~~g~~~~~~~~~----~~~~P~~l~vd~~~g~ly~~~~~------------------------  140 (266)
T d1ijqa1          89 SNIYWTDSVLGTVSVADTKGVKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWG------------------------  140 (266)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSEEEEEEC----TTCCEEEEEEETTTTEEEEEECS------------------------
T ss_pred             ceEEEEecCCCEEEeEecCCceEEEEEcC----CCCCcceEEEEcccCeEEEeccC------------------------
Confidence            999999987 4689999988765554332    134688999997 7899999853                        


Q ss_pred             CCCcccCCCCeEEEEeCCCCeEEEec-ccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecC--CCCC
Q 015463          221 SPIKITKDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAIL--PGYP  297 (406)
Q Consensus       221 ~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l--~g~p  297 (406)
                             ..+++++.+.++...+.+. .++..|+|+++++.++.+||++...++|.+++++|...  ..+....  ...|
T Consensus       141 -------~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~--~~~~~~~~~~~~p  211 (266)
T d1ijqa1         141 -------TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR--KTILEDEKRLAHP  211 (266)
T ss_dssp             -------SSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEEECTTTTSSE
T ss_pred             -------CCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCE--EEEEeCCCccccc
Confidence                   1367999999866666554 66789999999999999999999999999999986422  2222222  2347


Q ss_pred             CceEECCCCCEEEEEccC
Q 015463          298 DNVRTNEKGEFWVAIHCR  315 (406)
Q Consensus       298 d~i~~d~~G~lwv~~~~~  315 (406)
                      .+++++ ++.||++....
T Consensus       212 ~~lav~-~~~ly~td~~~  228 (266)
T d1ijqa1         212 FSLAVF-EDKVFWTDIIN  228 (266)
T ss_dssp             EEEEEE-TTEEEEEETTT
T ss_pred             EEEEEE-CCEEEEEECCC
Confidence            789998 57788887544

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.1e-09  Score=98.62  Aligned_cols=200  Identities=14%  Similarity=0.138  Sum_probs=130.9

Q ss_pred             CcceEEEEeCCCCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcC-CCCEEEEeCCCchhhhcccccc
Q 015463          131 GRPLGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRQMQKEN  208 (406)
Q Consensus       131 ~~p~gi~~d~~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~-dG~ly~t~~~~~~~~~~~~~~~  208 (406)
                      ..+.+|.+|..++.||.+|.. +.|++.+.++..............+..|.+|++|. .++||+++..            
T Consensus        30 ~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~------------   97 (266)
T d1ijqa1          30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV------------   97 (266)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETT------------
T ss_pred             CceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecC------------
Confidence            457899999867889999976 45888877643211111110111245688999996 6799999864            


Q ss_pred             ccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEE-ecccCCCcceEEEecCCCEEEEEeCCC-CeEEEEEeeCCCCcc
Q 015463          209 IPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTV-LLRNLQFPNGLSLSKDKSFFVFCEGSV-GRLHKYWLIGEKAGN  286 (406)
Q Consensus       209 ~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~-~~~~~~~~ngi~l~~d~~~l~v~~t~~-~~i~~~~~~g~~~~~  286 (406)
                                          .+++.+++.++..... +...+..|.++++++....+||++... .+|.+.+++|..   
T Consensus        98 --------------------~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~---  154 (266)
T d1ijqa1          98 --------------------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---  154 (266)
T ss_dssp             --------------------TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC---
T ss_pred             --------------------CCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc---
Confidence                                3678899888665544 446678899999999888999998654 489999988642   


Q ss_pred             eeeee-cCCCCCCceEECCCC-CEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEECCCCC
Q 015463          287 LEAFA-ILPGYPDNVRTNEKG-EFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGK  364 (406)
Q Consensus       287 ~~~~~-~l~g~pd~i~~d~~G-~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~  364 (406)
                      .+.+. +.-..|.++++|..+ +||.+.....                                      .|.+++.+|.
T Consensus       155 ~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~--------------------------------------~I~~~~~dG~  196 (266)
T d1ijqa1         155 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLH--------------------------------------SISSIDVNGG  196 (266)
T ss_dssp             EEEEECSSCSCEEEEEEETTTTEEEEEETTTT--------------------------------------EEEEEETTSC
T ss_pred             eecccccccceeeEEEeeccccEEEEecCCcC--------------------------------------EEEEEECCCC
Confidence            23333 333569999999654 5888764321                                      2555666664


Q ss_pred             EEEE-EECCCCCeeeceeEEEEeCCEEEEecCCCCeEEEEeC
Q 015463          365 ILQV-LEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDL  405 (406)
Q Consensus       365 ~~~~-~~~~~g~~~~~~s~~~~~~g~Ly~Gs~~~~~i~~~~~  405 (406)
                      -... .....+.  ....++...+++||+.....+.|.++++
T Consensus       197 ~~~~~~~~~~~~--~~p~~lav~~~~ly~td~~~~~I~~~~~  236 (266)
T d1ijqa1         197 NRKTILEDEKRL--AHPFSLAVFEDKVFWTDIINEAIFSANR  236 (266)
T ss_dssp             SCEEEEECTTTT--SSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             CEEEEEeCCCcc--cccEEEEEECCEEEEEECCCCeEEEEEC
Confidence            3222 2232221  2334555668899999888888888874

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=2.7e-10  Score=102.67  Aligned_cols=180  Identities=18%  Similarity=0.150  Sum_probs=128.1

Q ss_pred             ceeccCcccCcceEEEcCC-CCeeEEEecCCEEEEEeCC-ce-eEEEeecCCCccccCCCCCcccccccCCcCCcceEEE
Q 015463           61 EIKFLNQIQGPESMAFDPL-GRGPYTGVADGRILFWDGL-KW-TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLR  137 (406)
Q Consensus        61 ~~~~~~~~~gpe~i~~d~~-g~~ly~g~~~g~I~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~  137 (406)
                      +.+...++..|++|++|.- ++++|+....++|.+.+.+ .. +.+..                      .....|.+|+
T Consensus        71 ~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~----------------------~~l~~p~~l~  128 (263)
T d1npea_          71 TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD----------------------TGLVNPRGIV  128 (263)
T ss_dssp             EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC----------------------SSCSSEEEEE
T ss_pred             EEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEec----------------------ccccCCcEEE
Confidence            4455566789999999964 5555566777899999876 22 22211                      1125699999


Q ss_pred             EeCCCCcEEEEeCCC---cEEEEeCCCCeEEEcccccCCcccccccceEEcCC-CCEEEEeCCCchhhhccccccccccc
Q 015463          138 FDKKTGDLYIADAYF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDE-GNVYFTDSSTNYQRRQMQKENIPLQL  213 (406)
Q Consensus       138 ~d~~~g~L~Vad~~~---gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~d-G~ly~t~~~~~~~~~~~~~~~~~~~~  213 (406)
                      +|+..|.||+.+.+.   .|++.+.++...+.+...    .+..|++|++|.. ++||+++..                 
T Consensus       129 vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~----~~~~P~glaiD~~~~~lYw~d~~-----------------  187 (263)
T d1npea_         129 TDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQD----NLGLPNGLTFDAFSSQLCWVDAG-----------------  187 (263)
T ss_dssp             EETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECT----TCSCEEEEEEETTTTEEEEEETT-----------------
T ss_pred             EecccCcEEEeecCCCCcEEEEecCCCCCceeeeee----cccccceEEEeecCcEEEEEeCC-----------------
Confidence            999889999998753   399999987765554322    2457899999964 579999864                 


Q ss_pred             cccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee-c
Q 015463          214 CSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-I  292 (406)
Q Consensus       214 ~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~-~  292 (406)
                                     .+.+.++|.++...+.+..++..|.+|++.  ++.+||++...++|++++..+.  ....++. .
T Consensus       188 ---------------~~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g--~~~~~~~~~  248 (263)
T d1npea_         188 ---------------THRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAIS--KEMDTFHPH  248 (263)
T ss_dssp             ---------------TTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTT--EEEEEECCS
T ss_pred             ---------------CCEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEEECCCCEEEEEECCCC--ccceEECCC
Confidence                           367999999877777778888889999885  6689999999999999997532  1222332 2


Q ss_pred             CCCCCCceEE
Q 015463          293 LPGYPDNVRT  302 (406)
Q Consensus       293 l~g~pd~i~~  302 (406)
                      ....|-+|++
T Consensus       249 ~~~~~~gi~v  258 (263)
T d1npea_         249 KQTRLYGITI  258 (263)
T ss_dssp             SCCCCCCEEE
T ss_pred             CCCCcceEEE
Confidence            2234667665

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.29  E-value=2.2e-10  Score=103.95  Aligned_cols=156  Identities=17%  Similarity=0.216  Sum_probs=113.2

Q ss_pred             CcccCcceEEEcCCCCeeEEEecCCEEEEEeCC-ce-eEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC
Q 015463           66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDGL-KW-TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (406)
Q Consensus        66 ~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g  143 (406)
                      ..+..|.+++++++|+++++....+++.+++.+ .. ..+...                     .....|.++++++ +|
T Consensus       111 ~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~---------------------~~~~~~~~i~~d~-~g  168 (279)
T d1q7fa_         111 TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCS---------------------KHLEFPNGVVVND-KQ  168 (279)
T ss_dssp             TTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECT---------------------TTCSSEEEEEECS-SS
T ss_pred             CcccccceeccccCCcEEEEeeccceeeEeccCCceeeccccc---------------------ccccccceeeecc-ce
Confidence            456789999999999966666777889999887 32 222110                     1135688999998 89


Q ss_pred             cEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCC
Q 015463          144 DLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSP  222 (406)
Q Consensus       144 ~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  222 (406)
                      ++|+++.. +.|.++++++..+..+..  . ..+..|.+|++|++|+||+++..                          
T Consensus       169 ~i~v~d~~~~~V~~~d~~G~~~~~~g~--~-g~~~~P~giavD~~G~i~Vad~~--------------------------  219 (279)
T d1q7fa_         169 EIFISDNRAHCVKVFNYEGQYLRQIGG--E-GITNYPIGVGINSNGEILIADNH--------------------------  219 (279)
T ss_dssp             EEEEEEGGGTEEEEEETTCCEEEEESC--T-TTSCSEEEEEECTTCCEEEEECS--------------------------
T ss_pred             eEEeeeccccceeeeecCCceeeeecc--c-ccccCCcccccccCCeEEEEECC--------------------------
Confidence            99999986 568999998776555432  1 23667999999999999999853                          


Q ss_pred             CcccCCCCeEEEEeCCCCeEEEeccc--CCCcceEEEecCCCEEEEEeCCCCeEEEEEe
Q 015463          223 IKITKDTGRVLKYDPTTKQTTVLLRN--LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWL  279 (406)
Q Consensus       223 ~~~~~~~g~l~~~d~~t~~~~~~~~~--~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~  279 (406)
                           ..++|..|+++..-...+...  ...|.+|++++|+. +||++. +++|.+|..
T Consensus       220 -----~~~~v~~f~~~G~~~~~~~~~~~~~~p~~vav~~dG~-l~V~~~-n~~v~~fr~  271 (279)
T d1q7fa_         220 -----NNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGS-VVLASK-DYRLYIYRY  271 (279)
T ss_dssp             -----SSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTE-EEEEET-TTEEEEEEC
T ss_pred             -----CCcEEEEECCCCCEEEEEeCCCCCCCEeEEEEeCCCc-EEEEeC-CCeEEEEEe
Confidence                 124688898864333444333  34688999999985 788875 688888864

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.21  E-value=2.4e-10  Score=104.91  Aligned_cols=186  Identities=9%  Similarity=-0.025  Sum_probs=124.1

Q ss_pred             cCcceEEEcCCCCeeEE-EecCCEEEEEeCC----ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC
Q 015463           69 QGPESMAFDPLGRGPYT-GVADGRILFWDGL----KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG  143 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~-g~~~g~I~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g  143 (406)
                      ..|.+++++++|+ +|+ +..++.+.+++..    ....+...                     .....|.++++++ +|
T Consensus        68 ~~~~gla~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~n~i~~~~-~g  124 (302)
T d2p4oa1          68 GKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGTVETLLTL---------------------PDAIFLNGITPLS-DT  124 (302)
T ss_dssp             SEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSCEEEEEEC---------------------TTCSCEEEEEESS-SS
T ss_pred             CCcceEEEcCCCC-eEEEecCCceEEEEEecccccceeecccc---------------------CCccccceeEEcc-CC
Confidence            5789999999999 555 4556666666532    22222211                     1235588999998 89


Q ss_pred             cEEEEeCC-CcEEEEeCCCCeEEEcccc------cCCcccccccceEEcCCCCEEEEeCCCchhhhcccccccccccccc
Q 015463          144 DLYIADAY-FGLMKVGPEGGLATSLATE------AEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSS  216 (406)
Q Consensus       144 ~L~Vad~~-~gl~~~d~~~~~~~~l~~~------~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e  216 (406)
                      ++|+++.. ..++++++.++........      ........++++..+. +.+|++++.                    
T Consensus       125 ~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~--------------------  183 (302)
T d2p4oa1         125 QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTE--------------------  183 (302)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETT--------------------
T ss_pred             CEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCC--------------------
Confidence            99999886 5699999998865543221      1112344678888774 579998764                    


Q ss_pred             CCCCCCCcccCCCCeEEEEeCCCCeEE---EecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecC
Q 015463          217 LNDPSPIKITKDTGRVLKYDPTTKQTT---VLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAIL  293 (406)
Q Consensus       217 ~~~~~~~~~~~~~g~l~~~d~~t~~~~---~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l  293 (406)
                                  .+++++++.......   ........+.|+++++||+ +|+++...++|++++.+|    +...+...
T Consensus       184 ------------~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~-l~va~~~~~~V~~i~p~G----~~~~~~~~  246 (302)
T d2p4oa1         184 ------------KMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGN-LYGATHIYNSVVRIAPDR----STTIIAQA  246 (302)
T ss_dssp             ------------TTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCC-EEEECBTTCCEEEECTTC----CEEEEECG
T ss_pred             ------------CCeEEeccccccccccccccccCCCCCcceEECCCCC-EEEEEcCCCcEEEECCCC----CEEEEEec
Confidence                        377999987654221   1123356789999999996 889988889999998654    23333321


Q ss_pred             --C-CCCCceEEC---CCCC-EEEEEccC
Q 015463          294 --P-GYPDNVRTN---EKGE-FWVAIHCR  315 (406)
Q Consensus       294 --~-g~pd~i~~d---~~G~-lwv~~~~~  315 (406)
                        + ..|.+++++   +|++ |||++..+
T Consensus       247 ~~~~~~pt~vafg~~~~D~~~Lyvtt~~g  275 (302)
T d2p4oa1         247 EQGVIGSTAVAFGQTEGDCTAIYVVTNGG  275 (302)
T ss_dssp             GGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             CCCCCCceEEEEcCCCCCCCEEEEECCCC
Confidence              1 237788984   4554 99998765

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.10  E-value=1.2e-07  Score=84.41  Aligned_cols=186  Identities=12%  Similarity=0.144  Sum_probs=121.7

Q ss_pred             cCcceEEEcCCCCeeEE-EecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEE
Q 015463           69 QGPESMAFDPLGRGPYT-GVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI  147 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~-g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~V  147 (406)
                      ..|.+++++++|+.+|+ +..++.|..||....+.+....                     ....|.++++++++..+++
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~   90 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP---------------------AGSSPQGVAVSPDGKQVYV   90 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE---------------------CSSSEEEEEECTTSSEEEE
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeee---------------------ccccccccccccccccccc
Confidence            46899999999997775 4568899999987322222111                     1245889999984445666


Q ss_pred             EeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCccc
Q 015463          148 ADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKIT  226 (406)
Q Consensus       148 ad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~  226 (406)
                      +... ..+..++..+++.......     ...+..++++++|..++....                              
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~dg~~~~~~~~------------------------------  135 (301)
T d1l0qa2          91 TNMASSTLSVIDTTSNTVAGTVKT-----GKSPLGLALSPDGKKLYVTNN------------------------------  135 (301)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEEC-----SSSEEEEEECTTSSEEEEEET------------------------------
T ss_pred             cccccceeeecccccceeeeeccc-----cccceEEEeecCCCeeeeeec------------------------------
Confidence            6655 3577778877754432221     124667889999975544321                              


Q ss_pred             CCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCCC
Q 015463          227 KDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKG  306 (406)
Q Consensus       227 ~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G  306 (406)
                       ..+.+..++..+++..........+..+++++|++.++++......+..++....   ...........|.+++++.+|
T Consensus       136 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g  211 (301)
T d1l0qa2         136 -GDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN---SVIDTVKVEAAPSGIAVNPEG  211 (301)
T ss_dssp             -TTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEECSSEEEEEEECTTS
T ss_pred             -cccceeeeeccccceeeecccCCCceEEEeeccccceeeecccccccccccccce---eeeecccccCCcceeeccccc
Confidence             1356788888888766666666678889999999999999876666666654321   111112234457888899988


Q ss_pred             C-EEEEEcc
Q 015463          307 E-FWVAIHC  314 (406)
Q Consensus       307 ~-lwv~~~~  314 (406)
                      + +|++...
T Consensus       212 ~~~~v~~~~  220 (301)
T d1l0qa2         212 TKAYVTNVD  220 (301)
T ss_dssp             SEEEEEEEC
T ss_pred             ccccccccc
Confidence            8 5566543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.08  E-value=4.5e-09  Score=96.02  Aligned_cols=137  Identities=12%  Similarity=0.066  Sum_probs=94.6

Q ss_pred             eEEEEeCCCCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccccccc
Q 015463          134 LGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQ  212 (406)
Q Consensus       134 ~gi~~d~~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~  212 (406)
                      -|-..|+++++||..|.. +.|+++|+++++.+.+...      ..+..++.+++|++|++..                 
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~------~~~~~i~~~~dg~l~va~~-----------------   77 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTVHALP------FMGSALAKISDSKQLIASD-----------------   77 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECS------SCEEEEEEEETTEEEEEET-----------------
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEECC------CCcEEEEEecCCCEEEEEe-----------------
Confidence            356788768999999965 5799999999987655322      2366789999999999873                 


Q ss_pred             ccccCCCCCCCcccCCCCeEEEEeCCCCeEEEeccc-----CCCcceEEEecCCCEEEEEeCC------CCeEEEEEeeC
Q 015463          213 LCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRN-----LQFPNGLSLSKDKSFFVFCEGS------VGRLHKYWLIG  281 (406)
Q Consensus       213 ~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-----~~~~ngi~l~~d~~~l~v~~t~------~~~i~~~~~~g  281 (406)
                                       .+|+++|+++++.+.+...     ...+|.+.++++|+ +|++...      .+.++++.  .
T Consensus        78 -----------------~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~-iw~~~~~~~~~~~~g~l~~~~--~  137 (295)
T d2ghsa1          78 -----------------DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--K  137 (295)
T ss_dssp             -----------------TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--T
T ss_pred             -----------------CccEEeecccceeeEEeeeecCCCcccceeeEECCCCC-EEEEeccccccccceeEeeec--C
Confidence                             3599999999998877532     22467888999996 6666432      22344432  1


Q ss_pred             CCCcceeeeecCCCCCCceEECCCCC-EEEEEccCC
Q 015463          282 EKAGNLEAFAILPGYPDNVRTNEKGE-FWVAIHCRR  316 (406)
Q Consensus       282 ~~~~~~~~~~~l~g~pd~i~~d~~G~-lwv~~~~~~  316 (406)
                         ++......-...|++++.+++++ +|++....+
T Consensus       138 ---g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~  170 (295)
T d2ghsa1         138 ---GKVTKLFADISIPNSICFSPDGTTGYFVDTKVN  170 (295)
T ss_dssp             ---TEEEEEEEEESSEEEEEECTTSCEEEEEETTTC
T ss_pred             ---CcEEEEeeccCCcceeeecCCCceEEEeecccc
Confidence               22222222234589999998887 788876543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.79  E-value=4.4e-06  Score=73.88  Aligned_cols=171  Identities=14%  Similarity=0.165  Sum_probs=111.5

Q ss_pred             eEE-EecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCC-cEEEEeCC-CcEEEEeC
Q 015463           83 PYT-GVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG-DLYIADAY-FGLMKVGP  159 (406)
Q Consensus        83 ly~-g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g-~L~Vad~~-~gl~~~d~  159 (406)
                      +|+ +..++.|..||.+..+.....                     .....|.++++++ +| .|||+... +.|..+|.
T Consensus         4 ~yV~~~~~~~v~v~D~~t~~~~~~i---------------------~~g~~p~~va~sp-dG~~l~v~~~~~~~i~v~d~   61 (301)
T d1l0qa2           4 AYIANSESDNISVIDVTSNKVTATI---------------------PVGSNPMGAVISP-DGTKVYVANAHSNDVSIIDT   61 (301)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEE---------------------ECSSSEEEEEECT-TSSEEEEEEGGGTEEEEEET
T ss_pred             EEEEECCCCEEEEEECCCCeEEEEE---------------------ECCCCceEEEEeC-CCCEEEEEECCCCEEEEEEC
Confidence            454 567789999997622221111                     1135689999999 55 47888765 56999999


Q ss_pred             CCCeEEEcccccCCcccccccceEEcCCCCEEE-EeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCC
Q 015463          160 EGGLATSLATEAEGVPLRFTNDLDIDDEGNVYF-TDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPT  238 (406)
Q Consensus       160 ~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~-t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~  238 (406)
                      ++++.......     ...+..++++++|..++ +...                                .+.+..++..
T Consensus        62 ~t~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~  104 (301)
T d1l0qa2          62 ATNNVIATVPA-----GSSPQGVAVSPDGKQVYVTNMA--------------------------------SSTLSVIDTT  104 (301)
T ss_dssp             TTTEEEEEEEC-----SSSEEEEEECTTSSEEEEEETT--------------------------------TTEEEEEETT
T ss_pred             CCCceeeeeec-----cccccccccccccccccccccc--------------------------------cceeeecccc
Confidence            88865332111     13477899999987544 4322                                3568888988


Q ss_pred             CCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCCCC-EEEEEccC
Q 015463          239 TKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE-FWVAIHCR  315 (406)
Q Consensus       239 t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~-lwv~~~~~  315 (406)
                      +++..........+..+++++|++.++++......+..++....   ...........|..++.++++. +|++....
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (301)
T d1l0qa2         105 SNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK---AVINTVSVGRSPKGIAVTPDGTKVYVANFDS  179 (301)
T ss_dssp             TTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEECCSSEEEEEECTTSSEEEEEETTT
T ss_pred             cceeeeeccccccceEEEeecCCCeeeeeeccccceeeeecccc---ceeeecccCCCceEEEeeccccceeeecccc
Confidence            88776666666677889999999999888877677777765421   1111112223466778888777 66665443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.77  E-value=3.8e-06  Score=75.63  Aligned_cols=192  Identities=13%  Similarity=0.178  Sum_probs=108.0

Q ss_pred             cCcceEEEcCCCCeeEEEec-CCEEEEEeCC---ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc
Q 015463           69 QGPESMAFDPLGRGPYTGVA-DGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~-~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~  144 (406)
                      ..|.+|++++||+.||++.. ++.|..|+-+   ....+...                    ......|.++++++++..
T Consensus        37 ~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~--------------------~~~~~~p~~l~~spDg~~   96 (333)
T d1ri6a_          37 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAE--------------------SALPGSLTHISTDHQGQF   96 (333)
T ss_dssp             SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE--------------------EECSSCCSEEEECTTSSE
T ss_pred             CCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeee--------------------cccCCCceEEEEcCCCCE
Confidence            46789999999998888765 6888776532   21122111                    111355889999994445


Q ss_pred             EEEEeCCC-cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCE-EEEeCCCchhhhccccccccccccccCCCCCC
Q 015463          145 LYIADAYF-GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV-YFTDSSTNYQRRQMQKENIPLQLCSSLNDPSP  222 (406)
Q Consensus       145 L~Vad~~~-gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~l-y~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  222 (406)
                      |++++... .+..++.+............  ....+.+++++++|+. +.++..                          
T Consensus        97 l~v~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~v~~s~d~~~~~~~~~~--------------------------  148 (333)
T d1ri6a_          97 VFVGSYNAGNVSVTRLEDGLPVGVVDVVE--GLDGCHSANISPDNRTLWVPALK--------------------------  148 (333)
T ss_dssp             EEEEETTTTEEEEEEEETTEEEEEEEEEC--CCTTBCCCEECTTSSEEEEEEGG--------------------------
T ss_pred             EeecccCCCceeeeccccccceecccccC--CCccceEEEeeecceeeeccccc--------------------------
Confidence            88887654 45555555443332222111  1234678899999964 444321                          


Q ss_pred             CcccCCCCeEEEEeCCCCeEEE-------ecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcc--eeeeecC
Q 015463          223 IKITKDTGRVLKYDPTTKQTTV-------LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGN--LEAFAIL  293 (406)
Q Consensus       223 ~~~~~~~g~l~~~d~~t~~~~~-------~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~--~~~~~~l  293 (406)
                            ...+..|+..+.....       .......|..+++++++..++++....+....+.........  .......
T Consensus       149 ------~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  222 (333)
T d1ri6a_         149 ------QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMM  222 (333)
T ss_dssp             ------GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECS
T ss_pred             ------cceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeee
Confidence                  1345555544332111       112234567899999999999988777776666654221111  1111111


Q ss_pred             C------CCCCceEECCCCC-EEEEEcc
Q 015463          294 P------GYPDNVRTNEKGE-FWVAIHC  314 (406)
Q Consensus       294 ~------g~pd~i~~d~~G~-lwv~~~~  314 (406)
                      +      ..|..++++++|+ +|++...
T Consensus       223 ~~~~~~~~~~~~~~~s~d~~~~~~~~~~  250 (333)
T d1ri6a_         223 PENFSDTRWAADIHITPDGRHLYACDRT  250 (333)
T ss_dssp             CTTCCSCCCEEEEEECTTSSEEEEEETT
T ss_pred             ecCCCccccceeEEEecccCceeeeccc
Confidence            1      2234567788888 5555543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.72  E-value=5.4e-06  Score=77.26  Aligned_cols=191  Identities=12%  Similarity=0.121  Sum_probs=104.3

Q ss_pred             cCcceEEEcCCCCeeEEEecCCEEEEE--eCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcE
Q 015463           69 QGPESMAFDPLGRGPYTGVADGRILFW--DGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL  145 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L  145 (406)
                      ..|..|+++++|+.+|+... +.+..+  +.+ ........                     ...+.|..+++++++..+
T Consensus        40 ~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~---------------------~~~~~p~~v~~~~~~~~~   97 (365)
T d1jofa_          40 EPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASH---------------------PIGGHPRANDADTNTRAI   97 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEE---------------------ECCSSGGGGCTTSCCEEE
T ss_pred             CCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeee---------------------cCCCCcEEEEECCCCCEE
Confidence            45677999999998898754 445444  333 22222111                     113446666777633345


Q ss_pred             EEEeCCC---cEEEE--eCCCCeEEEccc-----------ccCCcccccccceEEcCCCC-EEEEeCCCchhhhcccccc
Q 015463          146 YIADAYF---GLMKV--GPEGGLATSLAT-----------EAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKEN  208 (406)
Q Consensus       146 ~Vad~~~---gl~~~--d~~~~~~~~l~~-----------~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~  208 (406)
                      ||+.+..   .++.+  ...++.......           ...-.....+.++++++||+ +|+++..            
T Consensus        98 ~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g------------  165 (365)
T d1jofa_          98 FLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT------------  165 (365)
T ss_dssp             EEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT------------
T ss_pred             EEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCC------------
Confidence            6665431   23222  222222111100           00001122567899999996 7777743            


Q ss_pred             ccccccccCCCCCCCcccCCCCeEEEEeC-CCCeEEEe-----cccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCC
Q 015463          209 IPLQLCSSLNDPSPIKITKDTGRVLKYDP-TTKQTTVL-----LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE  282 (406)
Q Consensus       209 ~~~~~~~e~~~~~~~~~~~~~g~l~~~d~-~t~~~~~~-----~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~  282 (406)
                                          ...|+.|+. .++.....     ...-..|.+++++||++.+|++....+.|..|+.+..
T Consensus       166 --------------------~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         166 --------------------ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             --------------------TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             --------------------CCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence                                234555532 22333222     1223567889999999999999988899999998753


Q ss_pred             CCcceeeeec---C-CC-------------CCCceEECCCCC-EEEEEc
Q 015463          283 KAGNLEAFAI---L-PG-------------YPDNVRTNEKGE-FWVAIH  313 (406)
Q Consensus       283 ~~~~~~~~~~---l-~g-------------~pd~i~~d~~G~-lwv~~~  313 (406)
                      +.........   . .+             .+..++++++|+ +|++..
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr  274 (365)
T d1jofa_         226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR  274 (365)
T ss_dssp             TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred             CceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcc
Confidence            2211111100   0 11             134578899998 677654

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.67  E-value=8.9e-06  Score=72.26  Aligned_cols=198  Identities=18%  Similarity=0.186  Sum_probs=119.3

Q ss_pred             ceeccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeC
Q 015463           61 EIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK  140 (406)
Q Consensus        61 ~~~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~  140 (406)
                      .++..|.-..-.+++++++|+.+++++.||.|..|+...-+......                   .........+++.+
T Consensus         5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~-------------------~~h~~~v~~v~~~~   65 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP-------------------DVHATMITGIKTTS   65 (299)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSS-------------------CSCSSCEEEEEECT
T ss_pred             ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc-------------------CCCCCcEEEEEeec
Confidence            45556666677899999999989999999999999876211111110                   00123456889998


Q ss_pred             CCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCC
Q 015463          141 KTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDP  220 (406)
Q Consensus       141 ~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~  220 (406)
                       +|.++++...+.+..++..+.......... ......+..+++.++|.+.++...                        
T Consensus        66 -~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~g~~~~~~~~------------------------  119 (299)
T d1nr0a2          66 -KGDLFTVSWDDHLKVVPAGGSGVDSSKAVA-NKLSSQPLGLAVSADGDIAVAACY------------------------  119 (299)
T ss_dssp             -TSCEEEEETTTEEEEECSSSSSSCTTSCCE-EECSSCEEEEEECTTSSCEEEEES------------------------
T ss_pred             -cceeecccceeeEEEeccCCcccccccccc-cccccccccccccccccccccccc------------------------
Confidence             789998887788888886544322111000 011124567888888887766532                        


Q ss_pred             CCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCce
Q 015463          221 SPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNV  300 (406)
Q Consensus       221 ~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i  300 (406)
                               +.+..++..  +...... ......+++++|++.+.+.. ..+.|..+++.+.......... -.+....+
T Consensus       120 ---------~~i~~~~~~--~~~~~~~-~~~~~~~~~s~~~~~l~~g~-~dg~i~~~d~~~~~~~~~~~~~-~~~~i~~~  185 (299)
T d1nr0a2         120 ---------KHIAIYSHG--KLTEVPI-SYNSSCVALSNDKQFVAVGG-QDSKVHVYKLSGASVSEVKTIV-HPAEITSV  185 (299)
T ss_dssp             ---------SEEEEEETT--EEEEEEC-SSCEEEEEECTTSCEEEEEE-TTSEEEEEEEETTEEEEEEEEE-CSSCEEEE
T ss_pred             ---------ccccccccc--ccccccc-cccccccccccccccccccc-cccccccccccccccccccccc-cccccccc
Confidence                     456677653  3222221 23446788999998776654 4678999988753221111111 12223456


Q ss_pred             EECCCCCEEEEEccCCc
Q 015463          301 RTNEKGEFWVAIHCRRS  317 (406)
Q Consensus       301 ~~d~~G~lwv~~~~~~~  317 (406)
                      +++++|.+.++......
T Consensus       186 ~~~~~~~~l~~~~~d~~  202 (299)
T d1nr0a2         186 AFSNNGAFLVATDQSRK  202 (299)
T ss_dssp             EECTTSSEEEEEETTSC
T ss_pred             ccccccccccccccccc
Confidence            77888886665544333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=8.1e-05  Score=67.43  Aligned_cols=183  Identities=9%  Similarity=0.003  Sum_probs=113.3

Q ss_pred             cceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-EEE
Q 015463           71 PESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYI  147 (406)
Q Consensus        71 pe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-L~V  147 (406)
                      -.++++.++|+.+.+++.+|.|..|+..  ..+......                    ........+.+++ ++. +..
T Consensus       100 I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------------------~~~~~v~~~~~~~-~~~~l~s  158 (337)
T d1gxra_         100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT--------------------SSAPACYALAISP-DSKVCFS  158 (337)
T ss_dssp             EEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEE--------------------CSSSCEEEEEECT-TSSEEEE
T ss_pred             EEEEEEcCCCCEEEEeecccccccccccccccccccccc--------------------ccccccccccccc-ccccccc
Confidence            3578999999988899999999999865  211111110                    0122345677888 555 445


Q ss_pred             EeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463          148 ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK  227 (406)
Q Consensus       148 ad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  227 (406)
                      +.....+..++..+++.......    ....+.++++.++|+..++.+.                               
T Consensus       159 ~~~d~~i~~~~~~~~~~~~~~~~----~~~~v~~l~~s~~~~~~~~~~~-------------------------------  203 (337)
T d1gxra_         159 CCSDGNIAVWDLHNQTLVRQFQG----HTDGASCIDISNDGTKLWTGGL-------------------------------  203 (337)
T ss_dssp             EETTSCEEEEETTTTEEEEEECC----CSSCEEEEEECTTSSEEEEEET-------------------------------
T ss_pred             ccccccccccccccccccccccc----cccccccccccccccccccccc-------------------------------
Confidence            55556789999888765433221    1234667888888866555321                               


Q ss_pred             CCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCCCC
Q 015463          228 DTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE  307 (406)
Q Consensus       228 ~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~  307 (406)
                       +|.+..||..+++.............++++++++.+++.. ..+.+..+++.....  .... .-.+....++++++|+
T Consensus       204 -d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~d~~i~i~d~~~~~~--~~~~-~~~~~i~~v~~s~~g~  278 (337)
T d1gxra_         204 -DNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNKPDK--YQLH-LHESCVLSLKFAYCGK  278 (337)
T ss_dssp             -TSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTSSCE--EEEC-CCSSCEEEEEECTTSS
T ss_pred             -cccccccccccceeecccccccceEEEEEcccccccceec-ccccccccccccccc--cccc-ccccccceEEECCCCC
Confidence             3778889988876544333334456788999998776654 457888888753211  1111 1122234577888998


Q ss_pred             EEEEEcc
Q 015463          308 FWVAIHC  314 (406)
Q Consensus       308 lwv~~~~  314 (406)
                      +.++...
T Consensus       279 ~l~s~s~  285 (337)
T d1gxra_         279 WFVSTGK  285 (337)
T ss_dssp             EEEEEET
T ss_pred             EEEEEeC
Confidence            7776543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.55  E-value=2.6e-05  Score=69.70  Aligned_cols=147  Identities=12%  Similarity=0.037  Sum_probs=95.2

Q ss_pred             eeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-EEEEeCC-CcEEEEeC
Q 015463           82 GPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYIADAY-FGLMKVGP  159 (406)
Q Consensus        82 ~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-L~Vad~~-~gl~~~d~  159 (406)
                      .+++++.+++|..||....+.+...                  ........|.++++++ +|+ |||+... +.|..+|.
T Consensus         3 ~~vt~~~d~~v~v~D~~s~~~~~~i------------------~~~~~~~~~~~i~~sp-Dg~~l~v~~~~~~~v~v~D~   63 (337)
T d1pbyb_           3 YILAPARPDKLVVIDTEKMAVDKVI------------------TIADAGPTPMVPMVAP-GGRIAYATVNKSESLVKIDL   63 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEE------------------ECTTCTTCCCCEEECT-TSSEEEEEETTTTEEEEEET
T ss_pred             EEEEEcCCCEEEEEECCCCeEEEEE------------------ECCCCCCCccEEEECC-CCCEEEEEECCCCeEEEEEC
Confidence            4778899999999998732222111                  1111235588999999 554 7787654 56999999


Q ss_pred             CCCeEEEcccc-cCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeC
Q 015463          160 EGGLATSLATE-AEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDP  237 (406)
Q Consensus       160 ~~~~~~~l~~~-~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~  237 (406)
                      ++++...-... ........+.++++.+||+ +|++.......  .+                   ......+.+..+|.
T Consensus        64 ~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~--~~-------------------~~~~~~~~~~~~d~  122 (337)
T d1pbyb_          64 VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLE--LT-------------------HFEVQPTRVALYDA  122 (337)
T ss_dssp             TTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEEC--SS-------------------CEEECCCEEEEEET
T ss_pred             CCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcce--ee-------------------eccccccceeeccc
Confidence            98876432221 1222345678899999985 55554321000  00                   00223467888999


Q ss_pred             CCCeEEEecccCCCcceEEEecCCCEEEEEe
Q 015463          238 TTKQTTVLLRNLQFPNGLSLSKDKSFFVFCE  268 (406)
Q Consensus       238 ~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~  268 (406)
                      .+++..........+.++++++|++.++++.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  153 (337)
T d1pbyb_         123 ETLSRRKAFEAPRQITMLAWARDGSKLYGLG  153 (337)
T ss_dssp             TTTEEEEEEECCSSCCCEEECTTSSCEEEES
T ss_pred             cCCeEEEeccccCCceEEEEcCCCCEEEEEc
Confidence            9888766655566788999999999998864

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.54  E-value=6.1e-05  Score=67.91  Aligned_cols=242  Identities=12%  Similarity=0.056  Sum_probs=138.6

Q ss_pred             cCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCC
Q 015463           65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT  142 (406)
Q Consensus        65 ~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~  142 (406)
                      .+.-....++++.|+|+.+.+|..+|.|..|+..  ........                    ....+....+++.+ +
T Consensus        55 ~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~--------------------~~~~~~v~~v~~s~-d  113 (311)
T d1nr0a1          55 TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI--------------------PVFSGPVKDISWDS-E  113 (311)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEE--------------------ECSSSCEEEEEECT-T
T ss_pred             cCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccccccc--------------------ccccCccccccccc-c
Confidence            3334456888899999988899999999999865  11110000                    00124467899998 6


Q ss_pred             CcEEE-EeCC--CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCE-EEEeCCCchhhhccccccccccccccCC
Q 015463          143 GDLYI-ADAY--FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV-YFTDSSTNYQRRQMQKENIPLQLCSSLN  218 (406)
Q Consensus       143 g~L~V-ad~~--~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~l-y~t~~~~~~~~~~~~~~~~~~~~~~e~~  218 (406)
                      +.+++ +...  .-+..++.++++....   ..+ ....+.++++.++|.. .++.+                       
T Consensus       114 ~~~l~~~~~~~~~~~~v~~~~~~~~~~~---l~~-h~~~v~~v~~~~~~~~~l~sgs-----------------------  166 (311)
T d1nr0a1         114 SKRIAAVGEGRERFGHVFLFDTGTSNGN---LTG-QARAMNSVDFKPSRPFRIISGS-----------------------  166 (311)
T ss_dssp             SCEEEEEECCSSCSEEEEETTTCCBCBC---CCC-CSSCEEEEEECSSSSCEEEEEE-----------------------
T ss_pred             cccccccccccccccccccccccccccc---ccc-cccccccccccccceeeecccc-----------------------
Confidence            66544 4322  2255666665542211   111 1234678889988864 44322                       


Q ss_pred             CCCCCcccCCCCeEEEEeCCCCeEEEecccC-CCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeec----C
Q 015463          219 DPSPIKITKDTGRVLKYDPTTKQTTVLLRNL-QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI----L  293 (406)
Q Consensus       219 ~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~-~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~----l  293 (406)
                               .+|.+..||.++++........ ...+.++++||++.++.+. ..+.+..++.....  ....+..    .
T Consensus       167 ---------~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~-~d~~v~~~d~~~~~--~~~~~~~~~~~~  234 (311)
T d1nr0a1         167 ---------DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG-GDGTIVLYNGVDGT--KTGVFEDDSLKN  234 (311)
T ss_dssp             ---------TTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCC--EEEECBCTTSSS
T ss_pred             ---------cccccccccccccccccccccccccccccccCcccccccccc-cccccccccccccc--cccccccccccc
Confidence                     2467889999887765554443 3347899999998776654 35678888765321  1111211    1


Q ss_pred             CCCC---CceEECCCCCEEEEEccCCcchhhhhhcChhhhhhhhccCccceeeeeEeecCcceEEEEEEC-CCCCEEEEE
Q 015463          294 PGYP---DNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYS-PEGKILQVL  369 (406)
Q Consensus       294 ~g~p---d~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d-~~g~~~~~~  369 (406)
                      .|..   ..++++++|++.++....+                                      .+.-+| .+++.+..+
T Consensus       235 ~~h~~~V~~~~~s~~~~~l~tgs~Dg--------------------------------------~v~iwd~~t~~~~~~l  276 (311)
T d1nr0a1         235 VAHSGSVFGLTWSPDGTKIASASADK--------------------------------------TIKIWNVATLKVEKTI  276 (311)
T ss_dssp             CSSSSCEEEEEECTTSSEEEEEETTS--------------------------------------EEEEEETTTTEEEEEE
T ss_pred             ccccccccccccCCCCCEEEEEeCCC--------------------------------------eEEEEECCCCcEEEEE
Confidence            2222   2456788888666543221                                      133344 346667766


Q ss_pred             ECCCCCeeeceeEEEEeCCEEEEecCCCCeEEEEeCC
Q 015463          370 EDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDLS  406 (406)
Q Consensus       370 ~~~~g~~~~~~s~~~~~~g~Ly~Gs~~~~~i~~~~~~  406 (406)
                      ...... .....++...+..|+.++. ...|...|++
T Consensus       277 ~~~~~~-~~~~~~~~~~~~~l~s~s~-dG~i~~wd~d  311 (311)
T d1nr0a1         277 PVGTRI-EDQQLGIIWTKQALVSISA-NGFINFVNPE  311 (311)
T ss_dssp             ECCSSG-GGCEEEEEECSSCEEEEET-TCCEEEEETT
T ss_pred             ECCCCc-cceEEEEEecCCEEEEEEC-CCEEEEEeCC
Confidence            543221 1223344455677888886 5667777654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.49  E-value=4.6e-06  Score=77.74  Aligned_cols=207  Identities=13%  Similarity=0.058  Sum_probs=108.7

Q ss_pred             cCcceEEEcCCCCeeEEEec---CCEEEEEeC--C-ce-eEEEeecCCCcc-ccCCCCCcccccccCCcCCcceEEEEeC
Q 015463           69 QGPESMAFDPLGRGPYTGVA---DGRILFWDG--L-KW-TDFAFTSNNRSE-LCNPKPIATSYLKNEHICGRPLGLRFDK  140 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~---~g~I~~~~~--~-~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~gi~~d~  140 (406)
                      .+|.+++++++|+.+|+.+.   ++.+..+..  . .. ..+........+ .+.       . ........|+++++++
T Consensus        83 ~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~q~~~h~h~v~~sP  154 (365)
T d1jofa_          83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQ-------N-YEYQENTGIHGMVFDP  154 (365)
T ss_dssp             SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEE-------E-EECCTTCCEEEEEECT
T ss_pred             CCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCccc-------C-cccCCCCcceEEEECC
Confidence            46899999999987777653   345544321  1 11 111110000000 000       0 0001133578999999


Q ss_pred             CCCcEEEEeCC-CcEEEEeCC-CCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccC
Q 015463          141 KTGDLYIADAY-FGLMKVGPE-GGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSL  217 (406)
Q Consensus       141 ~~g~L~Vad~~-~gl~~~d~~-~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~  217 (406)
                      ++..||+++.+ ..|++++.+ .+............+...|..++++++|+ +|++...                     
T Consensus       155 dG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~---------------------  213 (365)
T d1jofa_         155 TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA---------------------  213 (365)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT---------------------
T ss_pred             CCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccC---------------------
Confidence            44459999876 456666432 33333222222222345788999999996 6666532                     


Q ss_pred             CCCCCCcccCCCCeEEEEeCCCCeE--EEe------cc------------cCCCcceEEEecCCCEEEEEeCCCC-----
Q 015463          218 NDPSPIKITKDTGRVLKYDPTTKQT--TVL------LR------------NLQFPNGLSLSKDKSFFVFCEGSVG-----  272 (406)
Q Consensus       218 ~~~~~~~~~~~~g~l~~~d~~t~~~--~~~------~~------------~~~~~ngi~l~~d~~~l~v~~t~~~-----  272 (406)
                                 .+.|..|+.++++.  ...      ..            ....+..++++|||+++|++.....     
T Consensus       214 -----------~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~  282 (365)
T d1jofa_         214 -----------GNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQG  282 (365)
T ss_dssp             -----------TTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCC
T ss_pred             -----------CCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccce
Confidence                       24565555443321  111      00            0112457899999999999864332     


Q ss_pred             eEEEEEeeCCC-Ccceeeeec---CCCCCCceEECC-CCC-EEEEEccC
Q 015463          273 RLHKYWLIGEK-AGNLEAFAI---LPGYPDNVRTNE-KGE-FWVAIHCR  315 (406)
Q Consensus       273 ~i~~~~~~g~~-~~~~~~~~~---l~g~pd~i~~d~-~G~-lwv~~~~~  315 (406)
                      .|..+.+.... ......+..   ..+.|.++++++ +|+ ++|+....
T Consensus       283 ~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s  331 (365)
T d1jofa_         283 YIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQE  331 (365)
T ss_dssp             EEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSS
T ss_pred             EEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCC
Confidence            37777665211 111111111   234799999986 788 66665443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.45  E-value=6.5e-05  Score=67.13  Aligned_cols=194  Identities=7%  Similarity=0.033  Sum_probs=108.7

Q ss_pred             cCcceEEEcCCCCeeEEEec-CCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcE
Q 015463           69 QGPESMAFDPLGRGPYTGVA-DGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL  145 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~-~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L  145 (406)
                      ..|.++++++||+.+|++.. ++.+..++..  .........                    .....|.++.+++++..+
T Consensus        83 ~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~--------------------~~~~~~~~v~~s~d~~~~  142 (333)
T d1ri6a_          83 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV--------------------EGLDGCHSANISPDNRTL  142 (333)
T ss_dssp             SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE--------------------CCCTTBCCCEECTTSSEE
T ss_pred             CCceEEEEcCCCCEEeecccCCCceeeeccccccceeccccc--------------------CCCccceEEEeeecceee
Confidence            46899999999998888876 4555555433  111111111                    112447788899844456


Q ss_pred             EEEeCC-CcEEEEeCCCCeEEE--cccccCCcccccccceEEcCCCCEEE-EeCCCchhhhccccccccccccccCCCCC
Q 015463          146 YIADAY-FGLMKVGPEGGLATS--LATEAEGVPLRFTNDLDIDDEGNVYF-TDSSTNYQRRQMQKENIPLQLCSSLNDPS  221 (406)
Q Consensus       146 ~Vad~~-~gl~~~d~~~~~~~~--l~~~~~~~~~~~~~~l~~d~dG~ly~-t~~~~~~~~~~~~~~~~~~~~~~e~~~~~  221 (406)
                      ++++.. ..+..++........  ............|..+++++++...+ +....                        
T Consensus       143 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~------------------------  198 (333)
T d1ri6a_         143 WVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELN------------------------  198 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTT------------------------
T ss_pred             eccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeecccc------------------------
Confidence            777654 346666654432111  11111112234577899998886544 43210                        


Q ss_pred             CCcccCCCCeEEEEeCCCCeEEEe---------cccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeee--
Q 015463          222 PIKITKDTGRVLKYDPTTKQTTVL---------LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAF--  290 (406)
Q Consensus       222 ~~~~~~~~g~l~~~d~~t~~~~~~---------~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~--  290 (406)
                            ....++.++.........         ......+.++++++|++.++++....+.+..+.+... .+.....  
T Consensus       199 ------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  271 (333)
T d1ri6a_         199 ------SSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSED-GSVLSKEGF  271 (333)
T ss_dssp             ------TEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-SCCEEEEEE
T ss_pred             ------CceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCC-CCEEEEEEE
Confidence                  011233333333222211         1122345678899999999999887777877777632 1111222  


Q ss_pred             ecCCCCCCceEECCCCC-EEEEEc
Q 015463          291 AILPGYPDNVRTNEKGE-FWVAIH  313 (406)
Q Consensus       291 ~~l~g~pd~i~~d~~G~-lwv~~~  313 (406)
                      ....+.|.++++++||+ +|++..
T Consensus       272 ~~~~~~p~~~a~spDGk~l~va~~  295 (333)
T d1ri6a_         272 QPTETQPRGFNVDHSGKYLIAAGQ  295 (333)
T ss_dssp             EECSSSCCCEEECTTSSEEEEECT
T ss_pred             eCCCCCeeEEEEeCCCCEEEEEEC
Confidence            22345689999999999 566643

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=0.00019  Score=64.78  Aligned_cols=188  Identities=13%  Similarity=0.044  Sum_probs=111.8

Q ss_pred             ccCcceEEEcCCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc
Q 015463           68 IQGPESMAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (406)
Q Consensus        68 ~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~  144 (406)
                      -....+++++++|+.|.+|. +|.|..|+..   ....+....                  .....+....+++.+ +++
T Consensus        51 ~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~------------------~~~h~~~I~~v~~s~-dg~  110 (337)
T d1gxra_          51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLD------------------CLNRDNYIRSCKLLP-DGC  110 (337)
T ss_dssp             SSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEE------------------CSCTTSBEEEEEECT-TSS
T ss_pred             CCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEee------------------ecCCCCcEEEEEEcC-CCC
Confidence            34568899999999888876 7889889854   111111000                  001123457899998 565


Q ss_pred             -EEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCC
Q 015463          145 -LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPI  223 (406)
Q Consensus       145 -L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  223 (406)
                       |.++...+.|..+|......+...... + ....+..+++.+++.+.++.+.                           
T Consensus       111 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~l~s~~~---------------------------  161 (337)
T d1gxra_         111 TLIVGGEASTLSIWDLAAPTPRIKAELT-S-SAPACYALAISPDSKVCFSCCS---------------------------  161 (337)
T ss_dssp             EEEEEESSSEEEEEECCCC--EEEEEEE-C-SSSCEEEEEECTTSSEEEEEET---------------------------
T ss_pred             EEEEeecccccccccccccccccccccc-c-cccccccccccccccccccccc---------------------------
Confidence             555555566888887644322221111 1 1123566778888887776532                           


Q ss_pred             cccCCCCeEEEEeCCCCeEEEecccC-CCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEE
Q 015463          224 KITKDTGRVLKYDPTTKQTTVLLRNL-QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRT  302 (406)
Q Consensus       224 ~~~~~~g~l~~~d~~t~~~~~~~~~~-~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~  302 (406)
                           .+.+..++..+++........ .....++++++++.++++.. .+.+..+++...+  ....+ +..+....+++
T Consensus       162 -----d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~-d~~v~i~d~~~~~--~~~~~-~~~~~i~~l~~  232 (337)
T d1gxra_         162 -----DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL-DNTVRSWDLREGR--QLQQH-DFTSQIFSLGY  232 (337)
T ss_dssp             -----TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-TSEEEEEETTTTE--EEEEE-ECSSCEEEEEE
T ss_pred             -----cccccccccccccccccccccccccccccccccccccccccc-cccccccccccce--eeccc-ccccceEEEEE
Confidence                 356888998887765544332 33467889999988776654 5788888865321  11111 22333455677


Q ss_pred             CCCCCEEEEEc
Q 015463          303 NEKGEFWVAIH  313 (406)
Q Consensus       303 d~~G~lwv~~~  313 (406)
                      +++|++.++..
T Consensus       233 ~~~~~~l~~~~  243 (337)
T d1gxra_         233 CPTGEWLAVGM  243 (337)
T ss_dssp             CTTSSEEEEEE
T ss_pred             cccccccceec
Confidence            88888665543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.37  E-value=6.1e-06  Score=78.68  Aligned_cols=178  Identities=10%  Similarity=-0.052  Sum_probs=109.7

Q ss_pred             EEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCCCcEEEEeCCCCe
Q 015463           84 YTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGL  163 (406)
Q Consensus        84 y~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~  163 (406)
                      .+...+|.|..||.+..+.+....                     ....|++++|++++..+|++...+.+..+|..+++
T Consensus        36 v~~~d~g~v~v~D~~t~~v~~~~~---------------------~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~   94 (432)
T d1qksa2          36 VTLRDAGQIALIDGSTYEIKTVLD---------------------TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE   94 (432)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEEE---------------------CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSS
T ss_pred             EEEcCCCEEEEEECCCCcEEEEEe---------------------CCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCC
Confidence            345667889999987322222111                     12358999999954568888877789999987765


Q ss_pred             EEEcccccC-CcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCe
Q 015463          164 ATSLATEAE-GVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQ  241 (406)
Q Consensus       164 ~~~l~~~~~-~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~  241 (406)
                      .+....... ..+.....+.++.+||+ +|++...                                .+.+..+|.++++
T Consensus        95 ~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~--------------------------------~~~v~i~d~~t~~  142 (432)
T d1qksa2          95 PTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYW--------------------------------PPQYVIMDGETLE  142 (432)
T ss_dssp             CCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE--------------------------------TTEEEEEETTTCC
T ss_pred             ceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCC--------------------------------CCeEEEEeCcccc
Confidence            322211111 11222333445567996 5676532                                3678889988887


Q ss_pred             EEEeccc------------CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCCCC-E
Q 015463          242 TTVLLRN------------LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE-F  308 (406)
Q Consensus       242 ~~~~~~~------------~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~-l  308 (406)
                      .......            .....+++.++|+..++++....+.|+.++....+...... ......|.+++++++|+ +
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~-i~~g~~~~~~~~spdg~~~  221 (432)
T d1qksa2         143 PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTE-ISAERFLHDGGLDGSHRYF  221 (432)
T ss_dssp             EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEE-EECCSSEEEEEECTTSCEE
T ss_pred             ceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEE-EcccCccccceECCCCCEE
Confidence            6543221            11234678899999999998888899999865432221111 12234578899999998 5


Q ss_pred             EEEEccC
Q 015463          309 WVAIHCR  315 (406)
Q Consensus       309 wv~~~~~  315 (406)
                      +++....
T Consensus       222 ~va~~~~  228 (432)
T d1qksa2         222 ITAANAR  228 (432)
T ss_dssp             EEEEGGG
T ss_pred             EEecccc
Confidence            6665443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.28  E-value=0.00048  Score=61.00  Aligned_cols=221  Identities=14%  Similarity=0.030  Sum_probs=116.6

Q ss_pred             cccCcceEEEcCCCCeeEE-EecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcE
Q 015463           67 QIQGPESMAFDPLGRGPYT-GVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL  145 (406)
Q Consensus        67 ~~~gpe~i~~d~~g~~ly~-g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L  145 (406)
                      ....|.++++++||+.+|+ +..++.|..||....+........               ........+.+++++++...+
T Consensus        32 ~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~---------------~~~~~~~~~~~v~~s~dg~~l   96 (337)
T d1pbyb_          32 AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLS---------------TPEERVKSLFGAALSPDGKTL   96 (337)
T ss_dssp             CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECC---------------BTTEEEECTTCEEECTTSSEE
T ss_pred             CCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecC---------------CCcccccceeeEEEcCCCcEE
Confidence            3457899999999997775 567899999997722222111100               001113446789999855567


Q ss_pred             EEEeCC------------CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCc-hhhh------ccc
Q 015463          146 YIADAY------------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTN-YQRR------QMQ  205 (406)
Q Consensus       146 ~Vad~~------------~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~-~~~~------~~~  205 (406)
                      +++...            ..+..+|..+++.......     ...+.++++++||. +|+++.... +...      ...
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~  171 (337)
T d1pbyb_          97 AIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-----PRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKP  171 (337)
T ss_dssp             EEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-----CSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEEC
T ss_pred             EEeecCCcceeeeccccccceeeccccCCeEEEeccc-----cCCceEEEEcCCCCEEEEEcCCcceeeeecCcEEEEee
Confidence            776532            2456677776654322111     13477889999995 555432110 0000      000


Q ss_pred             c-----------cccccccccc------------CCCCCCCcccCCCCeEEEEeCCCCeEEEe--cccCCCcceEEEecC
Q 015463          206 K-----------ENIPLQLCSS------------LNDPSPIKITKDTGRVLKYDPTTKQTTVL--LRNLQFPNGLSLSKD  260 (406)
Q Consensus       206 ~-----------~~~~~~~~~e------------~~~~~~~~~~~~~g~l~~~d~~t~~~~~~--~~~~~~~ngi~l~~d  260 (406)
                      .           .+..+....+            +.....+......+.+..++..++.....  .........++++++
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (337)
T d1pbyb_         172 IQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPA  251 (337)
T ss_dssp             STTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTT
T ss_pred             cCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEeccc
Confidence            0           0000000000            00011111122233467777776654432  122233445678888


Q ss_pred             CCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCCCC-EEEEEc
Q 015463          261 KSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE-FWVAIH  313 (406)
Q Consensus       261 ~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~-lwv~~~  313 (406)
                      +..++...   +.|..+++..   ++.......++.|..+++++||+ +|++..
T Consensus       252 ~~~~~~~~---~~i~v~d~~~---~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~  299 (337)
T d1pbyb_         252 KTRAFGAY---NVLESFDLEK---NASIKRVPLPHSYYSVNVSTDGSTVWLGGA  299 (337)
T ss_dssp             SSEEEEEE---SEEEEEETTT---TEEEEEEECSSCCCEEEECTTSCEEEEESB
T ss_pred             ceEEEEcc---ccEEEEECCC---CcEEEEEcCCCCEEEEEECCCCCEEEEEeC
Confidence            88877664   5788888653   22222223456688999999998 677653

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.25  E-value=6e-05  Score=67.48  Aligned_cols=161  Identities=15%  Similarity=0.091  Sum_probs=89.9

Q ss_pred             ccCcceEEEcCCCCeeEEE-ecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEE
Q 015463           68 IQGPESMAFDPLGRGPYTG-VADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (406)
Q Consensus        68 ~~gpe~i~~d~~g~~ly~g-~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~  146 (406)
                      -.+|.++++++||+.+|+. ..++.|..||....+........  .            ........|.++++++++..+|
T Consensus        39 ~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~--~------------~~~~~~~~~~~v~~s~DG~~l~  104 (346)
T d1jmxb_          39 KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS--S------------VPGEVGRSMYSFAISPDGKEVY  104 (346)
T ss_dssp             CCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC--C------------STTEEEECSSCEEECTTSSEEE
T ss_pred             CCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc--c------------cccccCCceEEEEEecCCCEEE
Confidence            3579999999999977765 46799999998732222211100  0            0111124578899999545688


Q ss_pred             EEeCC------------CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccccccccc
Q 015463          147 IADAY------------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLC  214 (406)
Q Consensus       147 Vad~~------------~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~  214 (406)
                      ++...            ..+..++..+++.......  .........+...+++.+|+++                    
T Consensus       105 v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--------------------  162 (346)
T d1jmxb_         105 ATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT--FPMPRQVYLMRAADDGSLYVAG--------------------  162 (346)
T ss_dssp             EEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE--EECCSSCCCEEECTTSCEEEES--------------------
T ss_pred             EEecCCcceeeeeccCcceEEEEecccceeeeEEEe--eeccCceEEEEecCCCEEEEeC--------------------
Confidence            87642            2233444333221100000  0000122334455677777764                    


Q ss_pred             ccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEe
Q 015463          215 SSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWL  279 (406)
Q Consensus       215 ~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~  279 (406)
                                     +.+..++..+++..........+.++++++++..+++.......+.....
T Consensus       163 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (346)
T d1jmxb_         163 ---------------PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYT  212 (346)
T ss_dssp             ---------------SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEE
T ss_pred             ---------------CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeee
Confidence                           23666777766655444444455667778888877777666565555443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.24  E-value=2.7e-05  Score=74.58  Aligned_cols=189  Identities=12%  Similarity=0.149  Sum_probs=105.1

Q ss_pred             cCcccCcceEEEcCCCCeeEEEec-CCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC
Q 015463           65 LNQIQGPESMAFDPLGRGPYTGVA-DGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK  141 (406)
Q Consensus        65 ~~~~~gpe~i~~d~~g~~ly~g~~-~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~  141 (406)
                      ..++..|.+|++.++|+ +|+... .|+|++++.+  ..+.+......    .          ......+..+||+++++
T Consensus        23 a~~L~~P~~la~~pdg~-llVter~~G~i~~v~~~~g~~~~i~~~~~~----~----------~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          23 LSNLNKPHALLWGPDNQ-IWLTERATGKILRVNPESGSVKTVFQVPEI----V----------NDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             ECCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTC----C----------CCTTSSCSEEEEEECTT
T ss_pred             ECCCCCceEEEEeCCCe-EEEEEecCCEEEEEECCCCcEeecccCCcc----c----------cccCCCCceeeEEeCCC
Confidence            44689999999999999 666664 7999999865  44444432211    0          01112345789999972


Q ss_pred             ---CCcEEEEeCC-----------C--cEEEEeC--CCCeE---EEcccccCCcccccccceEEcCCCCEEEEeCCCchh
Q 015463          142 ---TGDLYIADAY-----------F--GLMKVGP--EGGLA---TSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQ  200 (406)
Q Consensus       142 ---~g~L~Vad~~-----------~--gl~~~d~--~~~~~---~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~  200 (406)
                         ++.+|++-..           +  -+.++..  .....   +.+.........+....|++++||.||++..+....
T Consensus        88 f~~n~~iYvsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd~~~~  167 (450)
T d1crua_          88 FKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRN  167 (450)
T ss_dssp             TTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTT
T ss_pred             CccCCEEEEEEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecCCCcc
Confidence               4778886321           0  1333332  22211   112222222233556789999999999997542111


Q ss_pred             hhccc--cccccccccccCCCCCCCcccCCCCeEEEEeCCCCe-----------EEEecccCCCcceEEEecCCCEEEEE
Q 015463          201 RRQMQ--KENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQ-----------TTVLLRNLQFPNGLSLSKDKSFFVFC  267 (406)
Q Consensus       201 ~~~~~--~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~-----------~~~~~~~~~~~ngi~l~~d~~~l~v~  267 (406)
                      .....  .+.............  .......|.++|++++...           .+.+..++.+|.|++++++++ +|++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~--q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G~RNp~g~~~~p~g~-l~~~  244 (450)
T d1crua_         168 QLAYLFLPNQAQHTPTQQELNG--KDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGK-LLQS  244 (450)
T ss_dssp             SGGGTTSCCCTTCCCCHHHHHT--TCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSC-EEEE
T ss_pred             cccccccccccccCcccccccc--cccccccCceEEeeccccccccccccccccceEEEeccccccceeecccce-eeec
Confidence            00000  000000000000000  0012335889999987542           246788999999999999765 8888


Q ss_pred             eCCC
Q 015463          268 EGSV  271 (406)
Q Consensus       268 ~t~~  271 (406)
                      |.+.
T Consensus       245 e~G~  248 (450)
T d1crua_         245 EQGP  248 (450)
T ss_dssp             EECS
T ss_pred             cccc
Confidence            8653

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.21  E-value=4.1e-05  Score=72.72  Aligned_cols=159  Identities=13%  Similarity=0.074  Sum_probs=102.3

Q ss_pred             cCcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEe----CCC
Q 015463           69 QGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFD----KKT  142 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d----~~~  142 (406)
                      ..|.++++++||+.+|++..+|.|..|+..  +.......                     ..+..|.++++.    + +
T Consensus        62 ~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i---------------------~~~~~~~~~~~s~~~Sp-D  119 (432)
T d1qksa2          62 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI---------------------KIGSEARSIETSKMEGW-E  119 (432)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEE---------------------ECCSEEEEEEECCSTTC-T
T ss_pred             CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEE---------------------ecCCCCCCeEEecccCC-C
Confidence            479999999999999999999999999865  21111110                     012345566554    4 4


Q ss_pred             Cc-EEEEeCC-CcEEEEeCCCCeEEEcccc----cCC---cccccccceEEcCCCCEEEEeCCCchhhhccccccccccc
Q 015463          143 GD-LYIADAY-FGLMKVGPEGGLATSLATE----AEG---VPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQL  213 (406)
Q Consensus       143 g~-L~Vad~~-~gl~~~d~~~~~~~~l~~~----~~~---~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~  213 (406)
                      |+ ||++... +.+..+|.++++.......    ...   .+......++.+++|..++..                   
T Consensus       120 G~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs-------------------  180 (432)
T d1qksa2         120 DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN-------------------  180 (432)
T ss_dssp             TTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE-------------------
T ss_pred             CCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEE-------------------
Confidence            55 6776654 6789999988875443211    010   111233456777888654433                   


Q ss_pred             cccCCCCCCCcccCCCCeEEEEeCCCCeEEEe--cccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          214 CSSLNDPSPIKITKDTGRVLKYDPTTKQTTVL--LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       214 ~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~--~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                                  ....+.+..+|..+.+...+  ...-..+.+++++||++.++++....+.+..++.+
T Consensus       181 ------------~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~  237 (432)
T d1qksa2         181 ------------VKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTK  237 (432)
T ss_dssp             ------------ETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT
T ss_pred             ------------EccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecc
Confidence                        12247788898877654332  22335678999999999999998777777777754

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.12  E-value=0.00094  Score=62.46  Aligned_cols=176  Identities=9%  Similarity=-0.060  Sum_probs=103.6

Q ss_pred             EEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCCCcEEEEeCCCCe
Q 015463           84 YTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGL  163 (406)
Q Consensus        84 y~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~  163 (406)
                      .+...+|.|..||....+.+....                     ....|.+++|++++..||++...+.+..+|.++++
T Consensus        36 V~~~~dg~v~vwD~~t~~~~~~l~---------------------~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~   94 (426)
T d1hzua2          36 VTLRDAGQIALVDGDSKKIVKVID---------------------TGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKE   94 (426)
T ss_dssp             EEETTTTEEEEEETTTCSEEEEEE---------------------CCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSS
T ss_pred             EEEcCCCEEEEEECCCCcEEEEEe---------------------CCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCc
Confidence            345668999999987322222111                     12458999999954457888777789999998876


Q ss_pred             EEEcccccCC-cccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCe
Q 015463          164 ATSLATEAEG-VPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQ  241 (406)
Q Consensus       164 ~~~l~~~~~~-~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~  241 (406)
                      .........+ .+...+.++++.+||+ ++++...                                .+.+..+|.++++
T Consensus        95 ~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~--------------------------------~~~v~i~d~~~~~  142 (426)
T d1hzua2          95 PTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYW--------------------------------PPQFAIMDGETLE  142 (426)
T ss_dssp             CEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE--------------------------------SSEEEEEETTTCC
T ss_pred             eeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecC--------------------------------CCeEEEEcCCccc
Confidence            4332221111 1222334455567886 5665422                                2557778888776


Q ss_pred             EEEecccC------------CCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCCCCEE
Q 015463          242 TTVLLRNL------------QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFW  309 (406)
Q Consensus       242 ~~~~~~~~------------~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~lw  309 (406)
                      ........            .....++.++|+..++++....+.+..+........... .......|.++.++++|+++
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~  221 (426)
T d1hzua2         143 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT-SIGAAPFLADGGWDSSHRYF  221 (426)
T ss_dssp             EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEE-EEECCSSEEEEEECTTSCEE
T ss_pred             eeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeE-EeccCCccEeeeECCCCcEE
Confidence            55432211            112346777888888888777777777665432221111 11223346778899999966


Q ss_pred             EEEc
Q 015463          310 VAIH  313 (406)
Q Consensus       310 v~~~  313 (406)
                      ....
T Consensus       222 ~~a~  225 (426)
T d1hzua2         222 MTAA  225 (426)
T ss_dssp             EEEE
T ss_pred             Eeee
Confidence            5543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.11  E-value=0.0033  Score=57.19  Aligned_cols=156  Identities=6%  Similarity=-0.008  Sum_probs=93.0

Q ss_pred             ceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcE-EEE
Q 015463           72 ESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL-YIA  148 (406)
Q Consensus        72 e~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L-~Va  148 (406)
                      .+++++++|+.+.+++.+|.|..|+..  ++..+.....                   | .+....|+|++ ++++ ..+
T Consensus        11 t~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~g-------------------H-~~~V~~l~fsp-~~~~l~s~   69 (371)
T d1k8kc_          11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE-------------------H-NGQVTGVDWAP-DSNRIVTC   69 (371)
T ss_dssp             CEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEEC-------------------C-SSCEEEEEEET-TTTEEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecC-------------------C-CCCEEEEEECC-CCCEEEEE
Confidence            688999999988889999998888754  3333221111                   1 23357899998 6664 445


Q ss_pred             eCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCC
Q 015463          149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKD  228 (406)
Q Consensus       149 d~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  228 (406)
                      ...+.|..+|.+++..+..... .+ ....+.++.++++|+..++.+.                              ..
T Consensus        70 s~D~~i~vWd~~~~~~~~~~~~-~~-~~~~v~~i~~~p~~~~l~~~s~------------------------------d~  117 (371)
T d1k8kc_          70 GTDRNAYVWTLKGRTWKPTLVI-LR-INRAARCVRWAPNEKKFAVGSG------------------------------SR  117 (371)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEC-CC-CSSCEEEEEECTTSSEEEEEET------------------------------TS
T ss_pred             ECCCeEEEEeeccccccccccc-cc-ccccccccccccccccceeecc------------------------------cC
Confidence            5556688888877654432211 11 1234678899999986665432                              11


Q ss_pred             CCeEEEEeCCCCeEEE--ecccC-CCcceEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463          229 TGRVLKYDPTTKQTTV--LLRNL-QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  281 (406)
Q Consensus       229 ~g~l~~~d~~t~~~~~--~~~~~-~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g  281 (406)
                      .-+++.++........  ..... .....++++||++.+..+ +..+.+..++...
T Consensus       118 ~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~-s~D~~v~v~~~~~  172 (371)
T d1k8kc_         118 VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG-SCDFKCRIFSAYI  172 (371)
T ss_dssp             SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEE-ETTSCEEEEECCC
T ss_pred             cceeeeeecccccccccccccccccccccccccccccceecc-ccCcEEEEEeecc
Confidence            1245556655443221  12222 223568899999876544 4456777777653

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.09  E-value=0.00095  Score=59.87  Aligned_cols=151  Identities=15%  Similarity=0.003  Sum_probs=88.4

Q ss_pred             cCCCCeeEEEe-----cCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCC
Q 015463           77 DPLGRGPYTGV-----ADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAY  151 (406)
Q Consensus        77 d~~g~~ly~g~-----~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~  151 (406)
                      .+||+.+|+..     ....|+.+|.+.-+.+....                      .+...+++++++...||+++..
T Consensus        10 spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~----------------------~g~~~~~a~SpDg~~l~v~~~~   67 (355)
T d2bbkh_          10 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID----------------------GGFLPNPVVADDGSFIAHASTV   67 (355)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE----------------------ECSSCEEEECTTSSCEEEEEEE
T ss_pred             CCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEE----------------------CCCCCceEEcCCCCEEEEEeCC
Confidence            36777777753     24568888877222222111                      1223378999954568887642


Q ss_pred             ----------CcEEEEeCCCCeEEEcccccCC---cccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccC
Q 015463          152 ----------FGLMKVGPEGGLATSLATEAEG---VPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSL  217 (406)
Q Consensus       152 ----------~gl~~~d~~~~~~~~l~~~~~~---~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~  217 (406)
                                +.|..+|..+++..........   .....++.+++.++|+ +++++.+                     
T Consensus        68 ~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~---------------------  126 (355)
T d2bbkh_          68 FSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS---------------------  126 (355)
T ss_dssp             EEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS---------------------
T ss_pred             CccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCC---------------------
Confidence                      3488999998875432221111   1234577899999985 6666532                     


Q ss_pred             CCCCCCcccCCCCeEEEEeCCCCeEEEeccc--------CCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          218 NDPSPIKITKDTGRVLKYDPTTKQTTVLLRN--------LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       218 ~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~--------~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                                ....+..++..+++.......        ......+++++|++.+++.......+......
T Consensus       127 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~  187 (355)
T d2bbkh_         127 ----------PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTE  187 (355)
T ss_dssp             ----------SSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECC
T ss_pred             ----------CCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecc
Confidence                      123466667766654332211        11223578889999888877666666666544

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.08  E-value=3.4e-05  Score=73.21  Aligned_cols=229  Identities=15%  Similarity=0.067  Sum_probs=123.1

Q ss_pred             eccCcccCcceEEEc--CCCCeeEEE-ecCCEEEEEeCCce--eEEEeecCCCccccCCCCCcccccccCCcCCcceEEE
Q 015463           63 KFLNQIQGPESMAFD--PLGRGPYTG-VADGRILFWDGLKW--TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLR  137 (406)
Q Consensus        63 ~~~~~~~gpe~i~~d--~~g~~ly~g-~~~g~I~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~  137 (406)
                      ...+..+-|.-...+  +||+.+|+. ..+++|.+++.+..  ..+...                     +.+..|+|++
T Consensus        64 ~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~i---------------------P~g~gphgi~  122 (441)
T d1qnia2          64 YLNGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHI---------------------PNVQAIHGLR  122 (441)
T ss_dssp             CSCCCBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC---------------------TTCCCEEEEE
T ss_pred             cccCcccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEec---------------------CCCCCccceE
Confidence            334555667555443  689878876 46789999998732  222111                     1245699999


Q ss_pred             EeCCCCcEEEEeCC-Cc------------------EEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCC
Q 015463          138 FDKKTGDLYIADAY-FG------------------LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSST  197 (406)
Q Consensus       138 ~d~~~g~L~Vad~~-~g------------------l~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~  197 (406)
                      +.++...+||+... ..                  +..+|..+.++..-.. ..    ..+..+++++||. +|++...+
T Consensus       123 ~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~-v~----~~p~~v~~spdGk~a~vt~~ns  197 (441)
T d1qnia2         123 LQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI-VD----GNLDNTDADYTGKYATSTCYNS  197 (441)
T ss_dssp             ECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE-ES----SCCCCEEECSSSSEEEEEESCT
T ss_pred             EeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe-cC----CCccceEECCCCCEEEEEecCC
Confidence            99844557887532 22                  2346666554321111 11    2478899999995 67665432


Q ss_pred             chh-------h--hccccccccccccccCCCCCCCcccCCCCeEEEEeC-CCCeEEEecccCCCcceEEEecCCCEEEEE
Q 015463          198 NYQ-------R--RQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDP-TTKQTTVLLRNLQFPNGLSLSKDKSFFVFC  267 (406)
Q Consensus       198 ~~~-------~--~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~-~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~  267 (406)
                      .-.       .  .++.......... +....++.......+ +..++. .+..+......-..|.|++++|||+++|++
T Consensus       198 e~~~~id~~t~~~~d~i~v~n~p~~~-~~~~dGk~~~v~~~~-v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~  275 (441)
T d1qnia2         198 ERAVDLAGTMRNDRDWVVVFNVERIA-AAVKAGNFKTIGDSK-VPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIAN  275 (441)
T ss_dssp             TCCSSHHHHTCSSBCEEEEEEHHHHH-HHHHTTCCBCCTTCC-CCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEE
T ss_pred             CceEEEeccCcceEEEEEeCCccceE-EEecCCCEEEeCCCC-cEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEe
Confidence            100       0  0000000000000 000011111112233 444443 333333344445679999999999999999


Q ss_pred             eCCCCeEEEEEeeCC------CCc-ceeeeec-CCC-CCCceEECCCCCEEEEEccCCcch
Q 015463          268 EGSVGRLHKYWLIGE------KAG-NLEAFAI-LPG-YPDNVRTNEKGEFWVAIHCRRSLY  319 (406)
Q Consensus       268 ~t~~~~i~~~~~~g~------~~~-~~~~~~~-l~g-~pd~i~~d~~G~lwv~~~~~~~~~  319 (406)
                      ......+..++++.-      +.. ...+..+ ..| .|-...+|++|+.|.++.-...+.
T Consensus       276 ~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~  336 (441)
T d1qnia2         276 GKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVC  336 (441)
T ss_dssp             CTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred             CCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEE
Confidence            988889999997521      111 1112221 112 144457899999999986554443

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.07  E-value=0.0019  Score=57.63  Aligned_cols=189  Identities=11%  Similarity=-0.023  Sum_probs=106.3

Q ss_pred             cceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEE-E
Q 015463           71 PESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY-I  147 (406)
Q Consensus        71 pe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~-V  147 (406)
                      |-.++.+++|+.++.+ .++.|+.++.+  .......                     .+ ......+++.+ +|++. .
T Consensus        20 ~~~~a~~~~g~~l~~~-~~~~v~i~~~~~~~~~~~~~---------------------~H-~~~v~~~~~sp-~g~~lat   75 (311)
T d1nr0a1          20 AVVLGNTPAGDKIQYC-NGTSVYTVPVGSLTDTEIYT---------------------EH-SHQTTVAKTSP-SGYYCAS   75 (311)
T ss_dssp             CCCCEECTTSSEEEEE-ETTEEEEEETTCSSCCEEEC---------------------CC-SSCEEEEEECT-TSSEEEE
T ss_pred             eEEEEEcCCCCEEEEE-eCCEEEEEECCCCceeEEEc---------------------CC-CCCEEEEEEeC-CCCeEec
Confidence            4567888999966555 45678888765  2222111                     11 23467889999 67654 4


Q ss_pred             EeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccC
Q 015463          148 ADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITK  227 (406)
Q Consensus       148 ad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  227 (406)
                      ++..+.|..+|..++........ .+ ....+.++++.++|+++++.+..                              
T Consensus        76 g~~dg~i~iwd~~~~~~~~~~~~-~~-~~~~v~~v~~s~d~~~l~~~~~~------------------------------  123 (311)
T d1nr0a1          76 GDVHGNVRIWDTTQTTHILKTTI-PV-FSGPVKDISWDSESKRIAAVGEG------------------------------  123 (311)
T ss_dssp             EETTSEEEEEESSSTTCCEEEEE-EC-SSSCEEEEEECTTSCEEEEEECC------------------------------
T ss_pred             cccCceEeeeeeecccccccccc-cc-ccCcccccccccccccccccccc------------------------------
Confidence            55556788888776542111110 11 01246789999999877765320                              


Q ss_pred             CCCeEEEEeCCCCeEEEeccc-CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEECCCC
Q 015463          228 DTGRVLKYDPTTKQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKG  306 (406)
Q Consensus       228 ~~g~l~~~d~~t~~~~~~~~~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G  306 (406)
                      ....+..++.++++......+ ....+.++++++++.++++....+.|..|+....+  ....+..-......+..+++|
T Consensus       124 ~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~--~~~~~~~~~~~i~~v~~~p~~  201 (311)
T d1nr0a1         124 RERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK--FKSTFGEHTKFVHSVRYNPDG  201 (311)
T ss_dssp             SSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE--EEEEECCCSSCEEEEEECTTS
T ss_pred             ccccccccccccccccccccccccccccccccccceeeecccccccccccccccccc--cccccccccccccccccCccc
Confidence            012244455555543222222 23346788999998877776666778888865311  111111111223456788899


Q ss_pred             CEEEEEccCCc
Q 015463          307 EFWVAIHCRRS  317 (406)
Q Consensus       307 ~lwv~~~~~~~  317 (406)
                      ++.++....+.
T Consensus       202 ~~l~~~~~d~~  212 (311)
T d1nr0a1         202 SLFASTGGDGT  212 (311)
T ss_dssp             SEEEEEETTSC
T ss_pred             ccccccccccc
Confidence            87766544333

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.06  E-value=7e-05  Score=67.03  Aligned_cols=98  Identities=9%  Similarity=-0.002  Sum_probs=67.2

Q ss_pred             EEEeCCCCc-EEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccc
Q 015463          136 LRFDKKTGD-LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQL  213 (406)
Q Consensus       136 i~~d~~~g~-L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~  213 (406)
                      +++++ +++ |+++...+.|..+|.+++++..-.....   ...|.++++++||+ +|++...                 
T Consensus         2 ~a~~~-~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~---~~~p~~l~~spDG~~l~v~~~~-----------------   60 (346)
T d1jmxb_           2 PALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD---KFGPGTAMMAPDNRTAYVLNNH-----------------   60 (346)
T ss_dssp             CCCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEECSS---CCSSCEEEECTTSSEEEEEETT-----------------
T ss_pred             ccCCC-CCcEEEEEcCCCEEEEEECCCCCEEEEEEcCC---CCCcceEEECCCCCEEEEEECC-----------------
Confidence            45666 555 4556666789999999987543211111   13578999999996 6777642                 


Q ss_pred             cccCCCCCCCcccCCCCeEEEEeCCCCeEEEeccc-------CCCcceEEEecCCCEEEEEeC
Q 015463          214 CSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRN-------LQFPNGLSLSKDKSFFVFCEG  269 (406)
Q Consensus       214 ~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-------~~~~ngi~l~~d~~~l~v~~t  269 (406)
                                     .+.|..||.++++.......       ...+.++++++|++.+|++..
T Consensus        61 ---------------~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~  108 (346)
T d1jmxb_          61 ---------------YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVN  108 (346)
T ss_dssp             ---------------TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred             ---------------CCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEec
Confidence                           37899999998876543211       134679999999999998863

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.04  E-value=0.00024  Score=63.84  Aligned_cols=130  Identities=17%  Similarity=0.127  Sum_probs=88.6

Q ss_pred             EcC-CCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-EEEEeCC
Q 015463           76 FDP-LGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYIADAY  151 (406)
Q Consensus        76 ~d~-~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-L~Vad~~  151 (406)
                      +.| ||+ +++....|.|+.++.+  ....+                       . ..++...++|++ +|+ |+++...
T Consensus        10 fSP~dG~-~~a~~~~g~v~v~d~~~~~~~~~-----------------------~-~~~~v~~~~~sp-Dg~~l~~~~~~   63 (360)
T d1k32a3          10 FSPLDGD-LIAFVSRGQAFIQDVSGTYVLKV-----------------------P-EPLRIRYVRRGG-DTKVAFIHGTR   63 (360)
T ss_dssp             EEECGGG-CEEEEETTEEEEECTTSSBEEEC-----------------------S-CCSCEEEEEECS-SSEEEEEEEET
T ss_pred             ccCCCCC-EEEEEECCeEEEEECCCCcEEEc-----------------------c-CCCCEEEEEECC-CCCEEEEEEcC
Confidence            556 788 6666678899999876  22222                       1 135577899999 665 4444444


Q ss_pred             C--cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCC
Q 015463          152 F--GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDT  229 (406)
Q Consensus       152 ~--gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~  229 (406)
                      .  -|+.+|.++++.+.+...     ...+..+++.+||+..++...                                .
T Consensus        64 ~g~~v~v~d~~~~~~~~~~~~-----~~~v~~~~~spdg~~l~~~~~--------------------------------~  106 (360)
T d1k32a3          64 EGDFLGIYDYRTGKAEKFEEN-----LGNVFAMGVDRNGKFAVVAND--------------------------------R  106 (360)
T ss_dssp             TEEEEEEEETTTCCEEECCCC-----CCSEEEEEECTTSSEEEEEET--------------------------------T
T ss_pred             CCCEEEEEECCCCcEEEeeCC-----CceEEeeeecccccccceecc--------------------------------c
Confidence            3  388999999887765422     234678899999986666432                                3


Q ss_pred             CeEEEEeCCCCeEEEeccc-CCCcceEEEecCCCEEEEEe
Q 015463          230 GRVLKYDPTTKQTTVLLRN-LQFPNGLSLSKDKSFFVFCE  268 (406)
Q Consensus       230 g~l~~~d~~t~~~~~~~~~-~~~~ngi~l~~d~~~l~v~~  268 (406)
                      +.++.++.++++....... ......+++++|++.+.++.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~  146 (360)
T d1k32a3         107 FEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGF  146 (360)
T ss_dssp             SEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEE
T ss_pred             cccccccccccceeeeeecccccccchhhccceeeeeeec
Confidence            6788999988877655433 33456799999999887654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.00  E-value=0.00042  Score=63.47  Aligned_cols=186  Identities=11%  Similarity=0.026  Sum_probs=100.0

Q ss_pred             cCcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-E
Q 015463           69 QGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-L  145 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-L  145 (406)
                      ....+++++++|+.+.+++.|+.|..|+..  .+.......                    .....+..+.+++ +++ |
T Consensus        52 ~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~--------------------~~~~~v~~i~~~p-~~~~l  110 (371)
T d1k8kc_          52 GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVIL--------------------RINRAARCVRWAP-NEKKF  110 (371)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECC--------------------CCSSCEEEEEECT-TSSEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccc--------------------ccccccccccccc-ccccc
Confidence            345889999999988889999999998764  222221111                    1123467889998 555 5


Q ss_pred             EEEeCCCcEEE--EeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCC
Q 015463          146 YIADAYFGLMK--VGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPI  223 (406)
Q Consensus       146 ~Vad~~~gl~~--~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  223 (406)
                      +++...+-+..  ++....... ...... .....+.+++++++|++.++.+.                           
T Consensus       111 ~~~s~d~~i~i~~~~~~~~~~~-~~~~~~-~~~~~v~~v~~~p~~~~l~s~s~---------------------------  161 (371)
T d1k8kc_         111 AVGSGSRVISICYFEQENDWWV-CKHIKK-PIRSTVLSLDWHPNSVLLAAGSC---------------------------  161 (371)
T ss_dssp             EEEETTSSEEEEEEETTTTEEE-EEEECT-TCCSCEEEEEECTTSSEEEEEET---------------------------
T ss_pred             eeecccCcceeeeeeccccccc-cccccc-ccccccccccccccccceecccc---------------------------
Confidence            55555443444  444333221 111111 11124567888999987766432                           


Q ss_pred             cccCCCCeEEEEeCCCCe------------------EE-EecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCC
Q 015463          224 KITKDTGRVLKYDPTTKQ------------------TT-VLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKA  284 (406)
Q Consensus       224 ~~~~~~g~l~~~d~~t~~------------------~~-~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~  284 (406)
                           +|.+..|+...+.                  .. .........+++++++|++.++... ..+.|..+++.... 
T Consensus       162 -----D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~-~d~~i~iwd~~~~~-  234 (371)
T d1k8kc_         162 -----DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS-HDSTVCLADADKKM-  234 (371)
T ss_dssp             -----TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE-TTTEEEEEEGGGTT-
T ss_pred             -----CcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccc-cCCcceEEeeeccc-
Confidence                 2334444433221                  11 1111122346789999999876654 45788888875321 


Q ss_pred             cceeeeecCCCCC-CceEECCCCCEEEEEc
Q 015463          285 GNLEAFAILPGYP-DNVRTNEKGEFWVAIH  313 (406)
Q Consensus       285 ~~~~~~~~l~g~p-d~i~~d~~G~lwv~~~  313 (406)
                       ....+. ....| ..+++.++|.+.++..
T Consensus       235 -~~~~~~-~~~~~v~s~~fs~d~~~la~g~  262 (371)
T d1k8kc_         235 -AVATLA-SETLPLLAVTFITESSLVAAGH  262 (371)
T ss_dssp             -EEEEEE-CSSCCEEEEEEEETTEEEEEET
T ss_pred             -ceeeee-cccccceeeeecCCCCEEEEEc
Confidence             111111 11112 3456667776665543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.99  E-value=0.0012  Score=61.57  Aligned_cols=160  Identities=12%  Similarity=0.030  Sum_probs=94.6

Q ss_pred             cCcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEe----CCC
Q 015463           69 QGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFD----KKT  142 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d----~~~  142 (406)
                      ..|.+++++|||+.+|++..+|.|..|+.+  +........                     .+..|.+++++    +++
T Consensus        62 ~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~---------------------~~~~~~~~~~s~~~spDG  120 (426)
T d1hzua2          62 YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK---------------------IGIEARSVESSKFKGYED  120 (426)
T ss_dssp             SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE---------------------CCSEEEEEEECCSTTCTT
T ss_pred             CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEe---------------------CCCCCcceEEeeeecCCC
Confidence            479999999999999999999999999976  222211110                     12235555554    433


Q ss_pred             CcEEEEeCC-CcEEEEeCCCCeEEEccccc----CCc---ccccccceEEcCCCCEEEEeCCCchhhhcccccccccccc
Q 015463          143 GDLYIADAY-FGLMKVGPEGGLATSLATEA----EGV---PLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLC  214 (406)
Q Consensus       143 g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~----~~~---~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~  214 (406)
                      ..|+++... +.+..+|.+++.........    ...   .......++..+++..++.+                    
T Consensus       121 ~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~--------------------  180 (426)
T d1hzua2         121 RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN--------------------  180 (426)
T ss_dssp             TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE--------------------
T ss_pred             CEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEe--------------------
Confidence            346777644 56778888877654332210    000   01112234445555333222                    


Q ss_pred             ccCCCCCCCcccCCCCeEEEEeCCCCeE--EEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          215 SSLNDPSPIKITKDTGRVLKYDPTTKQT--TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       215 ~e~~~~~~~~~~~~~g~l~~~d~~t~~~--~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                                 ....+.+..++..+...  .........+.+++++++++.++++......+..++..
T Consensus       181 -----------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~  237 (426)
T d1hzua2         181 -----------VKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSK  237 (426)
T ss_dssp             -----------ETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETT
T ss_pred             -----------cCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecc
Confidence                       11235565555443321  11223345678999999999999998888888888765

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.98  E-value=0.00022  Score=64.14  Aligned_cols=136  Identities=13%  Similarity=0.052  Sum_probs=92.2

Q ss_pred             EEeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccccccccccc
Q 015463          137 RFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSS  216 (406)
Q Consensus       137 ~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e  216 (406)
                      .|+|.+|++++....+.|+.+|.+++....+..      ...+.++++.+||+..+..+.                    
T Consensus         9 ~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~~~------~~~v~~~~~spDg~~l~~~~~--------------------   62 (360)
T d1k32a3           9 DFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPE------PLRIRYVRRGGDTKVAFIHGT--------------------   62 (360)
T ss_dssp             EEEECGGGCEEEEETTEEEEECTTSSBEEECSC------CSCEEEEEECSSSEEEEEEEE--------------------
T ss_pred             cccCCCCCEEEEEECCeEEEEECCCCcEEEccC------CCCEEEEEECCCCCEEEEEEc--------------------
Confidence            467646777776666789999999887766532      124678999999965443321                    


Q ss_pred             CCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCC
Q 015463          217 LNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGY  296 (406)
Q Consensus       217 ~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~  296 (406)
                                .....|+.+|.++++.+.+.........++++||++.+..+. ..+.++.+++.+.+.  ...+......
T Consensus        63 ----------~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~  129 (360)
T d1k32a3          63 ----------REGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAN-DRFEIMTVDLETGKP--TVIERSREAM  129 (360)
T ss_dssp             ----------TTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEE-TTSEEEEEETTTCCE--EEEEECSSSC
T ss_pred             ----------CCCCEEEEEECCCCcEEEeeCCCceEEeeeecccccccceec-cccccccccccccce--eeeeeccccc
Confidence                      011258899999998887776666677899999999887665 467888888764321  1222223344


Q ss_pred             CCceEECCCCCEEEE
Q 015463          297 PDNVRTNEKGEFWVA  311 (406)
Q Consensus       297 pd~i~~d~~G~lwv~  311 (406)
                      ...+++.++|+..+.
T Consensus       130 ~~~~~~spdg~~la~  144 (360)
T d1k32a3         130 ITDFTISDNSRFIAY  144 (360)
T ss_dssp             CCCEEECTTSCEEEE
T ss_pred             ccchhhccceeeeee
Confidence            567888999985543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.88  E-value=0.001  Score=59.71  Aligned_cols=223  Identities=7%  Similarity=-0.063  Sum_probs=113.9

Q ss_pred             ceEEEcCCCCeeEEEe----------cCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEe
Q 015463           72 ESMAFDPLGRGPYTGV----------ADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFD  139 (406)
Q Consensus        72 e~i~~d~~g~~ly~g~----------~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d  139 (406)
                      .++++++||+.+|+..          .++.|..||..  +..........               ........|.+++++
T Consensus        50 ~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~---------------~~~~~~~~~~~~~~s  114 (355)
T d2bbkh_          50 PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDA---------------PRFLVGTYPWMTSLT  114 (355)
T ss_dssp             CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC---------------CCCCBSCCGGGEEEC
T ss_pred             CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCc---------------ceeecCCCCceEEEe
Confidence            3799999999888753          35778899876  22211111110               111234668899999


Q ss_pred             CCCCcEEEEeCC--CcEEEEeCCCCeEEEcccccC---CcccccccceEEcCCCCE-EEEeCCCchhh-hc---ccc-cc
Q 015463          140 KKTGDLYIADAY--FGLMKVGPEGGLATSLATEAE---GVPLRFTNDLDIDDEGNV-YFTDSSTNYQR-RQ---MQK-EN  208 (406)
Q Consensus       140 ~~~g~L~Vad~~--~gl~~~d~~~~~~~~l~~~~~---~~~~~~~~~l~~d~dG~l-y~t~~~~~~~~-~~---~~~-~~  208 (406)
                      ++++.++++...  ..+..++..+++.........   ..+......+++.+||.. ++......... ..   ... ..
T Consensus       115 ~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~  194 (355)
T d2bbkh_         115 PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDE  194 (355)
T ss_dssp             TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTS
T ss_pred             cCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceec
Confidence            955668888654  346778887776432211110   011122334667777753 33322111000 00   000 00


Q ss_pred             ccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEeccc-------------CCCcceEEEecCCCEEEEEeCCC----
Q 015463          209 IPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRN-------------LQFPNGLSLSKDKSFFVFCEGSV----  271 (406)
Q Consensus       209 ~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-------------~~~~ngi~l~~d~~~l~v~~t~~----  271 (406)
                      ..........+...+......+.++.++..+++...+...             ......+++++|++.+|+.....    
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~  274 (355)
T d2bbkh_         195 FLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWR  274 (355)
T ss_dssp             CBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTC
T ss_pred             ceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCcee
Confidence            0000000011122222244567788888877765443211             01224588999999998875432    


Q ss_pred             -----CeEEEEEeeCCCCcceeeeecCCCCCCceEECCCCC--EEEEE
Q 015463          272 -----GRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE--FWVAI  312 (406)
Q Consensus       272 -----~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~--lwv~~  312 (406)
                           ..|+.++....   +...-....+.|..+++++||+  ++++.
T Consensus       275 ~~~~~~~v~v~d~~t~---~~~~~~~~~~~~~~~a~spDG~~~l~v~~  319 (355)
T d2bbkh_         275 HKTASRFVVVLDAKTG---ERLAKFEMGHEIDSINVSQDEKPLLYALS  319 (355)
T ss_dssp             TTSCEEEEEEEETTTC---CEEEEEEEEEEECEEEECCSSSCEEEEEE
T ss_pred             ecCCCCeEEEEeCCCC---cEEEEecCCCCEEEEEEcCCCCeEEEEEE
Confidence                 35777775532   1111111234477899999997  44443

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.87  E-value=0.00073  Score=59.22  Aligned_cols=151  Identities=9%  Similarity=0.038  Sum_probs=94.9

Q ss_pred             CcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEe
Q 015463           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD  149 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad  149 (406)
                      .+.++++.++|+ +.+...++.+..++..+......                        ...+..+++.++...|.++.
T Consensus       101 ~~~~~~~s~~g~-~~~~~~~~~i~~~~~~~~~~~~~------------------------~~~~~~~~~s~~~~~l~~g~  155 (299)
T d1nr0a2         101 QPLGLAVSADGD-IAVAACYKHIAIYSHGKLTEVPI------------------------SYNSSCVALSNDKQFVAVGG  155 (299)
T ss_dssp             CEEEEEECTTSS-CEEEEESSEEEEEETTEEEEEEC------------------------SSCEEEEEECTTSCEEEEEE
T ss_pred             cccccccccccc-ccccccccccccccccccccccc------------------------cccccccccccccccccccc
Confidence            456788889998 55555667788887653222211                        12245678888333456666


Q ss_pred             CCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCC
Q 015463          150 AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDT  229 (406)
Q Consensus       150 ~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~  229 (406)
                      ..+.|..+|.++++.........   ...+.+++++++|...++.+.                                +
T Consensus       156 ~dg~i~~~d~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~--------------------------------d  200 (299)
T d1nr0a2         156 QDSKVHVYKLSGASVSEVKTIVH---PAEITSVAFSNNGAFLVATDQ--------------------------------S  200 (299)
T ss_dssp             TTSEEEEEEEETTEEEEEEEEEC---SSCEEEEEECTTSSEEEEEET--------------------------------T
T ss_pred             ccccccccccccccccccccccc---ccccccccccccccccccccc--------------------------------c
Confidence            66778888887776544322211   124678899999987665432                                3


Q ss_pred             CeEEEEeCCCCeEEEecccC----CCcceEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463          230 GRVLKYDPTTKQTTVLLRNL----QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  281 (406)
Q Consensus       230 g~l~~~d~~t~~~~~~~~~~----~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g  281 (406)
                      |.+..||..++........+    ...+.++++++++.++... ..+.|..+++..
T Consensus       201 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs-~dg~i~iwd~~~  255 (299)
T d1nr0a2         201 RKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGS-LDNSVIVWNMNK  255 (299)
T ss_dssp             SCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTC
T ss_pred             cccccccccccccccccccccccccccccccccccccceEEEc-CCCEEEEEECCC
Confidence            67888987766443322222    2235788999998776554 457788888763

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.86  E-value=0.009  Score=53.75  Aligned_cols=152  Identities=14%  Similarity=0.063  Sum_probs=89.6

Q ss_pred             ceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCC
Q 015463           72 ESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAY  151 (406)
Q Consensus        72 e~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~  151 (406)
                      .++++.++|+.+.+++.+|.|..++............                    .......+.+.++...+.++...
T Consensus       125 ~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~--------------------h~~~v~~~~~~~~~~~~~~~~~~  184 (388)
T d1erja_         125 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQG--------------------HEQDIYSLDYFPSGDKLVSGSGD  184 (388)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC--------------------CSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEECCCCCcceeccccccccccccccccccccccc--------------------ccccccccccccccccccccccc
Confidence            4688999999899999999999998762222211110                    02335567787734456666666


Q ss_pred             CcEEEEeCCCCeEEEcccccCCcccccccceEE-cCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCC
Q 015463          152 FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDI-DDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTG  230 (406)
Q Consensus       152 ~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~-d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g  230 (406)
                      +.+..+|..+..........     .....+.+ ..+|++.++.+.                                +|
T Consensus       185 ~~i~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~--------------------------------d~  227 (388)
T d1erja_         185 RTVRIWDLRTGQCSLTLSIE-----DGVTTVAVSPGDGKYIAAGSL--------------------------------DR  227 (388)
T ss_dssp             SEEEEEETTTTEEEEEEECS-----SCEEEEEECSTTCCEEEEEET--------------------------------TS
T ss_pred             eeeeeeeccccccccccccc-----cccccccccCCCCCeEEEEcC--------------------------------CC
Confidence            67888888776543322111     11223333 346666655321                                36


Q ss_pred             eEEEEeCCCCeEEEeccc--------CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463          231 RVLKYDPTTKQTTVLLRN--------LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG  281 (406)
Q Consensus       231 ~l~~~d~~t~~~~~~~~~--------~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g  281 (406)
                      .+..+|..++........        ......++++++++.++.+. ..+.|..+++..
T Consensus       228 ~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~d~~i~iwd~~~  285 (388)
T d1erja_         228 AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS-LDRSVKLWNLQN  285 (388)
T ss_dssp             CEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEEC--
T ss_pred             eEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEE-CCCcEEEEeccC
Confidence            688888776654332111        11235788999998776554 457888887653

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.82  E-value=0.0072  Score=53.77  Aligned_cols=157  Identities=15%  Similarity=0.189  Sum_probs=88.6

Q ss_pred             cceEEEcC--CCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcE
Q 015463           71 PESMAFDP--LGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL  145 (406)
Q Consensus        71 pe~i~~d~--~g~~ly~g~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L  145 (406)
                      ..++++.|  +|+.+.+|..||.|..|+..   ...........               ......+....+++.+ +++.
T Consensus        66 v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~---------------~~~~~~~~v~~v~~s~-~~~~  129 (325)
T d1pgua1          66 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKS---------------EFQVLAGPISDISWDF-EGRR  129 (325)
T ss_dssp             EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEE---------------EEECCSSCEEEEEECT-TSSE
T ss_pred             EEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeeccccc---------------ccccccCcEEEEEECC-CCCc
Confidence            35677865  56767788999999888753   11111100000               0111134456889988 5654


Q ss_pred             -EEEeCC--CcEEEEeCCCCeE-EEcccccCCcccccccceEEcCCCCE-EEEeCCCchhhhccccccccccccccCCCC
Q 015463          146 -YIADAY--FGLMKVGPEGGLA-TSLATEAEGVPLRFTNDLDIDDEGNV-YFTDSSTNYQRRQMQKENIPLQLCSSLNDP  220 (406)
Q Consensus       146 -~Vad~~--~gl~~~d~~~~~~-~~l~~~~~~~~~~~~~~l~~d~dG~l-y~t~~~~~~~~~~~~~~~~~~~~~~e~~~~  220 (406)
                       .++..+  ..+..++.++++. ..+.    + ....++++++.+++.. .++.+                         
T Consensus       130 l~~~~~~~~~~~~~~~~~~~~~~~~~~----~-h~~~v~~~~~~~~~~~~~~~~~-------------------------  179 (325)
T d1pgua1         130 LCVVGEGRDNFGVFISWDSGNSLGEVS----G-HSQRINACHLKQSRPMRSMTVG-------------------------  179 (325)
T ss_dssp             EEEEECCSSCSEEEEETTTCCEEEECC----S-CSSCEEEEEECSSSSCEEEEEE-------------------------
T ss_pred             cceeeccccceEEEEeecccccceeee----e-cccccccccccccccceEEEee-------------------------
Confidence             444332  3466677666543 2221    1 1234677888888754 34332                         


Q ss_pred             CCCcccCCCCeEEEEeCCCCeEEEecccC----CCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          221 SPIKITKDTGRVLKYDPTTKQTTVLLRNL----QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       221 ~~~~~~~~~g~l~~~d~~t~~~~~~~~~~----~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                             .+|.+..||..+.+...-....    .....++++||...++++....+.|..|++.
T Consensus       180 -------~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~  236 (325)
T d1pgua1         180 -------DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK  236 (325)
T ss_dssp             -------TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT
T ss_pred             -------cccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeec
Confidence                   1367888887766544332221    2246789999865566665556788888764

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.80  E-value=0.0064  Score=54.78  Aligned_cols=204  Identities=13%  Similarity=-0.011  Sum_probs=105.2

Q ss_pred             CcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcE-EEE
Q 015463           70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL-YIA  148 (406)
Q Consensus        70 gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L-~Va  148 (406)
                      .--+++++++|+.|.+|+ ++.|..|+.................-..  .................+++.+ ++++ ..+
T Consensus        64 ~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~V~~l~~s~-~~~~l~s~  139 (388)
T d1erja_          64 VVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDP--ENLNTSSSPSSDLYIRSVCFSP-DGKFLATG  139 (388)
T ss_dssp             CCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-------------------CCCCBEEEEEECT-TSSEEEEE
T ss_pred             cEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccc--cccccccccCCCCCEEEEEECC-CCCcceec
Confidence            446899999999777775 8889999865111111111000000000  0000000001123356789998 5654 455


Q ss_pred             eCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCC
Q 015463          149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKD  228 (406)
Q Consensus       149 d~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  228 (406)
                      ...+-|..++...++........    ...+..++..+++...++.+.                                
T Consensus       140 ~~dg~v~i~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~~~~~--------------------------------  183 (388)
T d1erja_         140 AEDRLIRIWDIENRKIVMILQGH----EQDIYSLDYFPSGDKLVSGSG--------------------------------  183 (388)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCC----SSCEEEEEECTTSSEEEEEET--------------------------------
T ss_pred             ccccccccccccccccccccccc----ccccccccccccccccccccc--------------------------------
Confidence            55556888888777544322111    124567777777765554322                                


Q ss_pred             CCeEEEEeCCCCeEEEecccCCCcceEEEec-CCCEEEEEeCCCCeEEEEEeeCCCCcceeeee----cCCCCC---Cce
Q 015463          229 TGRVLKYDPTTKQTTVLLRNLQFPNGLSLSK-DKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA----ILPGYP---DNV  300 (406)
Q Consensus       229 ~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~-d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~----~l~g~p---d~i  300 (406)
                      .|.+..+|..+...............+++.+ +++.++ +....+.|..++......  ...+.    ...+..   ..+
T Consensus       184 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~i~i~~~~~~~~--~~~~~~~~~~~~~h~~~v~~l  260 (388)
T d1erja_         184 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIA-AGSLDRAVRVWDSETGFL--VERLDSENESGTGHKDSVYSV  260 (388)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEE-EEETTSCEEEEETTTCCE--EEEEC------CCCSSCEEEE
T ss_pred             ceeeeeeeccccccccccccccccccccccCCCCCeEE-EEcCCCeEEEeecccCcc--ceeeccccccccCCCCCEEEE
Confidence            3678888888776555444333444455554 555554 444457788887653211  11111    011222   345


Q ss_pred             EECCCCCEEEEEccCC
Q 015463          301 RTNEKGEFWVAIHCRR  316 (406)
Q Consensus       301 ~~d~~G~lwv~~~~~~  316 (406)
                      .++++|++.++....+
T Consensus       261 ~~s~~~~~l~s~~~d~  276 (388)
T d1erja_         261 VFTRDGQSVVSGSLDR  276 (388)
T ss_dssp             EECTTSSEEEEEETTS
T ss_pred             EECCCCCEEEEEECCC
Confidence            6788888666554433

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=97.78  E-value=0.012  Score=52.78  Aligned_cols=103  Identities=10%  Similarity=-0.028  Sum_probs=55.7

Q ss_pred             ceEEEcCCCCeeEEEec----------CCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC
Q 015463           72 ESMAFDPLGRGPYTGVA----------DGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK  141 (406)
Q Consensus        72 e~i~~d~~g~~ly~g~~----------~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~  141 (406)
                      .++++.+||+.+|+...          ++.|..||....+..........             ........|.++++.++
T Consensus        69 ~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~-------------~~~~~~~~~~~~~~s~d  135 (373)
T d2madh_          69 PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDA-------------PRFDVGPYSWMNANTPN  135 (373)
T ss_pred             ccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCc-------------ceeEeccCCCcEEEEeC
Confidence            37999999998888653          35677777662222111100000             01112345778888885


Q ss_pred             CCcEEEEeCC--CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeC
Q 015463          142 TGDLYIADAY--FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDS  195 (406)
Q Consensus       142 ~g~L~Vad~~--~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~  195 (406)
                      +..+++....  ..+..++..+.+....        ...+..+++.++|. +|++.+
T Consensus       136 g~~~~v~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~s~~g~~~~v~~~  184 (373)
T d2madh_         136 NADLLFFQFAAGPAVGLVVQGGSSDDQL--------LSSPTCYHIHPGAPSTFYLLC  184 (373)
T ss_pred             CCcEEEEEEcCCCceEEeeccCCeEEEE--------eccceeEEEecCCCcEEEEEc
Confidence            5556666543  3455555554433211        12355677778874 556653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=97.77  E-value=0.0028  Score=57.21  Aligned_cols=196  Identities=12%  Similarity=-0.008  Sum_probs=102.4

Q ss_pred             ccCcceEEEcCCCCeeE-EEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc
Q 015463           68 IQGPESMAFDPLGRGPY-TGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (406)
Q Consensus        68 ~~gpe~i~~d~~g~~ly-~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~  144 (406)
                      ...|.++++.++|+.+| +...+|.+..++..  ...........                .......+..+..+. ++.
T Consensus       164 ~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~-~~~  226 (373)
T d2madh_         164 LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAML----------------TAAQNLLTQPAQANK-SGR  226 (373)
T ss_pred             eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeecc----------------ccCccceeeeEEECC-Cce
Confidence            45678888888887555 56778999888865  21111110000                000011223344444 333


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEccccc---C-----CcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccc
Q 015463          145 LYIADAYFGLMKVGPEGGLATSLATEA---E-----GVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCS  215 (406)
Q Consensus       145 L~Vad~~~gl~~~d~~~~~~~~l~~~~---~-----~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~  215 (406)
                      +........++.++..++.........   .     .........++..++|. +|+......                 
T Consensus       227 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----------------  289 (373)
T d2madh_         227 IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQS-----------------  289 (373)
T ss_pred             EEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCc-----------------
Confidence            333333455777776665433222110   0     00111233456666664 444332110                 


Q ss_pred             cCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEE-EEEeCCCCeEEEEEeeCCCCcceeeeecCC
Q 015463          216 SLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFF-VFCEGSVGRLHKYWLIGEKAGNLEAFAILP  294 (406)
Q Consensus       216 e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l-~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~  294 (406)
                            .+......+.+..+|..+++.......-..+.++++++|++.+ |++....+.|..|++...+  ....+....
T Consensus       290 ------~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~--~~~~~~~~g  361 (373)
T d2madh_         290 ------AWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD--QDQSTVELG  361 (373)
T ss_pred             ------eEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC--EEEEECCCC
Confidence                  0000233467899999888765555444667899999999874 5666666789999876321  111222233


Q ss_pred             CCCCceEECCC
Q 015463          295 GYPDNVRTNEK  305 (406)
Q Consensus       295 g~pd~i~~d~~  305 (406)
                      ..|..+++..+
T Consensus       362 ~~P~~l~~~~~  372 (373)
T d2madh_         362 SGPQVLSVMNE  372 (373)
T ss_pred             CCCcEEEEecC
Confidence            45777776543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.65  E-value=0.0035  Score=55.06  Aligned_cols=150  Identities=10%  Similarity=0.003  Sum_probs=92.3

Q ss_pred             ceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-EEEEeC
Q 015463           72 ESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYIADA  150 (406)
Q Consensus        72 e~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-L~Vad~  150 (406)
                      ......+.+..+.++..++.|..|+...........                    ...+....+++++ +++ |+++..
T Consensus       188 ~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~--------------------~h~~~i~~v~~~p-~~~~l~s~s~  246 (340)
T d1tbga_         188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT--------------------GHESDINAICFFP-NGNAFATGSD  246 (340)
T ss_dssp             EEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC--------------------CCSSCEEEEEECT-TSSEEEEEET
T ss_pred             eeeccccccceeEEeecCceEEEEECCCCcEEEEEe--------------------CCCCCeEEEEECC-CCCEEEEEeC
Confidence            344555667767788889999999876222221111                    0123457889998 555 455555


Q ss_pred             CCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCC
Q 015463          151 YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTG  230 (406)
Q Consensus       151 ~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g  230 (406)
                      .+.+..++............  ......+..++++++|++.++.+.                                +|
T Consensus       247 d~~i~~~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~g~~--------------------------------dg  292 (340)
T d1tbga_         247 DATCRLFDLRADQELMTYSH--DNIICGITSVSFSKSGRLLLAGYD--------------------------------DF  292 (340)
T ss_dssp             TSCEEEEETTTTEEEEEECC--TTCCSCEEEEEECSSSCEEEEEET--------------------------------TS
T ss_pred             CCeEEEEeeccccccccccc--ccccCceEEEEECCCCCEEEEEEC--------------------------------CC
Confidence            56688888876653322111  111234677899999987776432                                47


Q ss_pred             eEEEEeCCCCeEEEecccC-CCcceEEEecCCCEEEEEeCCCCeEEEE
Q 015463          231 RVLKYDPTTKQTTVLLRNL-QFPNGLSLSKDKSFFVFCEGSVGRLHKY  277 (406)
Q Consensus       231 ~l~~~d~~t~~~~~~~~~~-~~~ngi~l~~d~~~l~v~~t~~~~i~~~  277 (406)
                      .|..||..+++......+. .....+++++|++.++.+. ..+.|..+
T Consensus       293 ~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s-~Dg~v~iW  339 (340)
T d1tbga_         293 NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGS-WDSFLKIW  339 (340)
T ss_dssp             CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEE-TTSCEEEE
T ss_pred             EEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEc-cCCEEEEe
Confidence            7999998877665444432 3347899999998775544 34555443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.65  E-value=0.00095  Score=60.91  Aligned_cols=70  Identities=11%  Similarity=0.008  Sum_probs=49.0

Q ss_pred             CeEEEEeCCCCeEEEecccCCCcceEEEecCCC-EEEEEeCCCCeEEEEEeeCCCCcceeeeecCCCCCCceEE
Q 015463          230 GRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKS-FFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRT  302 (406)
Q Consensus       230 g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~-~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~  302 (406)
                      ..++.+|.++++.......-..+.++++++|++ .+|++....+.|+.|+...   ++..--..+...|..|++
T Consensus       294 ~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~t---gk~~~~i~~g~~P~~l~~  364 (368)
T d1mdah_         294 ENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS---DQDQSSVELDKGPESLSV  364 (368)
T ss_dssp             EEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSS---CEEEEECCCCSCCCEEEC
T ss_pred             ceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCC---CCEEEEEECCCCCCEEEE
Confidence            468899999887654444335678899999997 4788877778899999653   322222245556888876

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.63  E-value=0.0026  Score=57.85  Aligned_cols=81  Identities=7%  Similarity=-0.108  Sum_probs=52.5

Q ss_pred             eEEEcCCCCeeEEEec----------CCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCC
Q 015463           73 SMAFDPLGRGPYTGVA----------DGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT  142 (406)
Q Consensus        73 ~i~~d~~g~~ly~g~~----------~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~  142 (406)
                      .+++.+||+.+|+...          ++.|..||....+..........             ........|.++++.+++
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~-------------~~~~~g~~p~~~a~SpDG  135 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA-------------PRFSVGPRVHIIGNCASS  135 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS-------------CSCCBSCCTTSEEECTTS
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCcc-------------ceecccCCccceEECCCC
Confidence            6899999998888653          46688998773222221110000             111234568899999955


Q ss_pred             CcEEEEeCC-CcEEEEeCCCCeEEE
Q 015463          143 GDLYIADAY-FGLMKVGPEGGLATS  166 (406)
Q Consensus       143 g~L~Vad~~-~gl~~~d~~~~~~~~  166 (406)
                      ..|||++.. +.+..+|..+++...
T Consensus       136 k~l~va~~~~~~v~~~d~~~~~~~~  160 (368)
T d1mdah_         136 ACLLFFLFGSSAAAGLSVPGASDDQ  160 (368)
T ss_dssp             SCEEEEECSSSCEEEEEETTTEEEE
T ss_pred             CEEEEEeCCCCeEEEEECCCCcEeE
Confidence            568999764 568999999887644

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.60  E-value=0.018  Score=50.09  Aligned_cols=79  Identities=9%  Similarity=0.087  Sum_probs=51.3

Q ss_pred             ceeccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeC
Q 015463           61 EIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDK  140 (406)
Q Consensus        61 ~~~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~  140 (406)
                      ++.+.|.-....++++.++++.|.+|+.||.|..|+...........                    ........+++.+
T Consensus        48 ~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~--------------------~~~~~v~~v~~~~  107 (340)
T d1tbga_          48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP--------------------LRSSWVMTCAYAP  107 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEE--------------------CSCSCEEEEEECT
T ss_pred             eEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEe--------------------cccccEEeeEeec
Confidence            34456666667899999999989999999999999976222211111                    0123457889998


Q ss_pred             CCCc-EEEEeCCCcEEEEeCC
Q 015463          141 KTGD-LYIADAYFGLMKVGPE  160 (406)
Q Consensus       141 ~~g~-L~Vad~~~gl~~~d~~  160 (406)
                       +++ +..+.....+..++..
T Consensus       108 -~~~~l~~~~~d~~i~~~~~~  127 (340)
T d1tbga_         108 -SGNYVACGGLDNICSIYNLK  127 (340)
T ss_dssp             -TSSEEEEEETTCCEEEEESS
T ss_pred             -cceeeeeecccceeeccccc
Confidence             555 4555555556666644

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.57  E-value=0.003  Score=57.50  Aligned_cols=151  Identities=13%  Similarity=0.125  Sum_probs=85.8

Q ss_pred             cceEEEEeCCCCcEEEEeCC-------------CcEEEEeCCCCe--EEEccccc--CCcccccccceE--EcCCCC--E
Q 015463          132 RPLGLRFDKKTGDLYIADAY-------------FGLMKVGPEGGL--ATSLATEA--EGVPLRFTNDLD--IDDEGN--V  190 (406)
Q Consensus       132 ~p~gi~~d~~~g~L~Vad~~-------------~gl~~~d~~~~~--~~~l~~~~--~~~~~~~~~~l~--~d~dG~--l  190 (406)
                      .|-.|++++ +|.+++++..             +.|+.+|.++.+  ...+.-..  .......|.++.  .+++|.  |
T Consensus        36 G~EDi~~~~-dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L  114 (340)
T d1v04a_          36 GSEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL  114 (340)
T ss_dssp             CCCEEEECT-TSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CcceEEECC-CCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEE
Confidence            467799998 8888888632             347777765432  22222110  111112466654  467775  4


Q ss_pred             EEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEe----cccCCCcceEEEecCCCEEEE
Q 015463          191 YFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVL----LRNLQFPNGLSLSKDKSFFVF  266 (406)
Q Consensus       191 y~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~----~~~~~~~ngi~l~~d~~~l~v  266 (406)
                      |+.+...             ..+               .=.++.++.++.+.+..    ...+..||.|++..|+. +|+
T Consensus       115 ~vvnH~~-------------~~~---------------~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~-fy~  165 (340)
T d1v04a_         115 LVVNHPG-------------SSS---------------TVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYA  165 (340)
T ss_dssp             EEEECST-------------TCC---------------EEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEE
T ss_pred             EEEeccC-------------CCc---------------eeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC-EEE
Confidence            4443210             001               11377777776655433    24467789999988885 778


Q ss_pred             EeCC-----------------CCeEEEEEeeCCCCcceeeeecCCCCCCceEECCCCC-EEEEEccCCc
Q 015463          267 CEGS-----------------VGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE-FWVAIHCRRS  317 (406)
Q Consensus       267 ~~t~-----------------~~~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~-lwv~~~~~~~  317 (406)
                      ++..                 .+.++.|+.     +..++..+--.+|+||++++|++ +||+......
T Consensus       166 Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~-----~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~  229 (340)
T d1v04a_         166 TNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-----NDVRVVAEGFDFANGINISPDGKYVYIAELLAHK  229 (340)
T ss_dssp             EESCSCCSHHHHHHHHHTTCCCEEEEEECS-----SCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTE
T ss_pred             ecCccCcChhhhhhhHhhcCCceeEEEEcC-----CceEEEcCCCCccceeEECCCCCEEEEEeCCCCe
Confidence            7532                 123444432     23344443234699999999986 8999865543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.54  E-value=0.016  Score=51.41  Aligned_cols=195  Identities=13%  Similarity=0.022  Sum_probs=95.1

Q ss_pred             cceEEEcCCCCeeEEEecCCEEE-EEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCC-CCcEE
Q 015463           71 PESMAFDPLGRGPYTGVADGRIL-FWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK-TGDLY  146 (406)
Q Consensus        71 pe~i~~d~~g~~ly~g~~~g~I~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~-~g~L~  146 (406)
                      |.+++++++|+.+-.+..+..++ .++..  ....+...                   ..+.......++|.|. +|.+.
T Consensus        20 ~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~-------------------~gh~~~~v~~v~fsP~~~g~~l   80 (325)
T d1pgua1          20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQF-------------------TGHGSSVVTTVKFSPIKGSQYL   80 (325)
T ss_dssp             CCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEE-------------------CTTTTSCEEEEEECSSTTCCEE
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEE-------------------eCCCCCCEEEEEEeeCCCCCEE
Confidence            56888899998655555444333 33322  11111111                   0111233567889762 34444


Q ss_pred             E-EeCCCcEEEEeCCCCe----EEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCC
Q 015463          147 I-ADAYFGLMKVGPEGGL----ATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPS  221 (406)
Q Consensus       147 V-ad~~~gl~~~d~~~~~----~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~  221 (406)
                      + ++..+.|..+|...++    ...............+.+++..++|...++.+.                         
T Consensus        81 asgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-------------------------  135 (325)
T d1pgua1          81 CSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE-------------------------  135 (325)
T ss_dssp             EEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEEC-------------------------
T ss_pred             EEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeec-------------------------
Confidence            3 4444556666653221    110000000001123678889999977665432                         


Q ss_pred             CCcccCCCCeEEEEeCCCCeEEEeccc-CCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeecCCC---CC
Q 015463          222 PIKITKDTGRVLKYDPTTKQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPG---YP  297 (406)
Q Consensus       222 ~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~l~g---~p  297 (406)
                           ...+.+..++.++++......+ -...+.+++++++..++++....+.+..++....+.  ...+....+   ..
T Consensus       136 -----~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~--~~~~~~~~~~~~~v  208 (325)
T d1pgua1         136 -----GRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF--SASDRTHHKQGSFV  208 (325)
T ss_dssp             -----CSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE--EEEECSSSCTTCCE
T ss_pred             -----cccceEEEEeecccccceeeeecccccccccccccccceEEEeeccccccccccccccc--ceecccccCCCCcc
Confidence                 0123466666666654433333 233467899999887666555556777776542111  111111122   22


Q ss_pred             CceEECCC-CCEEEEEccCC
Q 015463          298 DNVRTNEK-GEFWVAIHCRR  316 (406)
Q Consensus       298 d~i~~d~~-G~lwv~~~~~~  316 (406)
                      ..++++++ |.+.++....+
T Consensus       209 ~~v~~~pd~~~~l~s~~~d~  228 (325)
T d1pgua1         209 RDVEFSPDSGEFVITVGSDR  228 (325)
T ss_dssp             EEEEECSTTCCEEEEEETTC
T ss_pred             EEeeeccccceecccccccc
Confidence            34667775 45655544333

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.39  E-value=0.0047  Score=57.20  Aligned_cols=222  Identities=13%  Similarity=0.028  Sum_probs=119.5

Q ss_pred             cCcccCcceEEEc--CCCCeeEEE-ecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEe
Q 015463           65 LNQIQGPESMAFD--PLGRGPYTG-VADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFD  139 (406)
Q Consensus        65 ~~~~~gpe~i~~d--~~g~~ly~g-~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d  139 (406)
                      -|+.+-|.--..+  .||+.+|+. ..+.||.|++.+  +...+...                     +....++|++..
T Consensus        82 ~GD~HHP~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~i---------------------Pn~~~~HG~r~~  140 (459)
T d1fwxa2          82 NGDLHHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEI---------------------PNAKGIHGLRPQ  140 (459)
T ss_dssp             CCCBCCEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC---------------------SSCCSEEEEEEC
T ss_pred             CCCcCCCcccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEec---------------------CCCCCCceeecc
Confidence            4677788333333  278877775 467999999988  32233221                     113447888876


Q ss_pred             CCCCcEEEEeCC-------------------Cc-EEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEe-CCCc
Q 015463          140 KKTGDLYIADAY-------------------FG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTD-SSTN  198 (406)
Q Consensus       140 ~~~g~L~Vad~~-------------------~g-l~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~-~~~~  198 (406)
                      +...+.||....                   .+ +..+|.++.++..-.. ..    ..+.+++++++|..-|.+ ..+.
T Consensus       141 ~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~-V~----g~ld~~~~s~dGK~af~TsyNSE  215 (459)
T d1fwxa2         141 KWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVL-VS----GNLDNCDADYEGKWAFSTSYNSE  215 (459)
T ss_dssp             CSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEE-ES----SCCCCEEECSSSSEEEEEESCTT
T ss_pred             cCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecCCceEEEEee-eC----CChhccccCCCCCEEEEEecccc
Confidence            534455665421                   02 4567877765532111 11    246789999999755544 2211


Q ss_pred             hh---------hhccccccc--cccccccCCCCCCCcccCCCCeEEEEeCCCC---eEEEecccCCCcceEEEecCCCEE
Q 015463          199 YQ---------RRQMQKENI--PLQLCSSLNDPSPIKITKDTGRVLKYDPTTK---QTTVLLRNLQFPNGLSLSKDKSFF  264 (406)
Q Consensus       199 ~~---------~~~~~~~~~--~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~---~~~~~~~~~~~~ngi~l~~d~~~l  264 (406)
                      -.         ..+|....+  ......   ++++   ...-+++-.+|..+.   .+..+..--..|+|+.++|||+++
T Consensus       216 ~g~~l~e~ta~e~D~i~V~n~~rie~av---~~Gk---~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi  289 (459)
T d1fwxa2         216 KGMTLPEMTAAEMDHIVVFNIAEIEKAI---AAGD---YQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHL  289 (459)
T ss_dssp             CCSSHHHHTCCSEEEEEEEEHHHHHHHH---HHTC---SEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEE
T ss_pred             CCcchhhcccccceEEEEechHHhHHhh---hcCC---cEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEE
Confidence            00         000000000  000000   0000   001134666776532   222233334568999999999999


Q ss_pred             EEEeCCCCeEEEEEeeC------CCC-cceeeeec--CCCCCCceEECCCCCEEEEEccCCcc
Q 015463          265 VFCEGSVGRLHKYWLIG------EKA-GNLEAFAI--LPGYPDNVRTNEKGEFWVAIHCRRSL  318 (406)
Q Consensus       265 ~v~~t~~~~i~~~~~~g------~~~-~~~~~~~~--l~g~pd~i~~d~~G~lwv~~~~~~~~  318 (406)
                      +++......+.+++.+.      .+. -...+..+  +.=-|--.++|.+|+.|.++.-...+
T Consensus       290 ~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v  352 (459)
T d1fwxa2         290 CVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQV  352 (459)
T ss_dssp             EEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEE
T ss_pred             EEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCceEEEEeeccceE
Confidence            99998888999999752      011 11112221  11125556889999999998755443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.36  E-value=0.002  Score=61.04  Aligned_cols=108  Identities=13%  Similarity=0.221  Sum_probs=69.4

Q ss_pred             cccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccC------
Q 015463          176 LRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNL------  249 (406)
Q Consensus       176 ~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~------  249 (406)
                      +..|.+|++.+||+|||+...                                .|+|+++++++++.+.+..-.      
T Consensus        26 L~~P~~la~~pdg~llVter~--------------------------------~G~i~~v~~~~g~~~~i~~~~~~~~~~   73 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERA--------------------------------TGKILRVNPESGSVKTVFQVPEIVNDA   73 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETT--------------------------------TCEEEEECTTTCCEEEEEECTTCCCCT
T ss_pred             CCCceEEEEeCCCeEEEEEec--------------------------------CCEEEEEECCCCcEeecccCCcccccc
Confidence            457889999999999999732                                388999999888776654211      


Q ss_pred             ---CCcceEEEecC---CCEEEEEeCC------------CCeEEEEEeeCCCC--ccee-eeecCCCC----CCceEECC
Q 015463          250 ---QFPNGLSLSKD---KSFFVFCEGS------------VGRLHKYWLIGEKA--GNLE-AFAILPGY----PDNVRTNE  304 (406)
Q Consensus       250 ---~~~ngi~l~~d---~~~l~v~~t~------------~~~i~~~~~~g~~~--~~~~-~~~~l~g~----pd~i~~d~  304 (406)
                         ...-||+++||   ...+|++.+.            ...+.++..+....  ...+ ++..++..    -..|++++
T Consensus        74 ~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgp  153 (450)
T d1crua_          74 DGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP  153 (450)
T ss_dssp             TSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT
T ss_pred             CCCCceeeEEeCCCCccCCEEEEEEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcC
Confidence               11236999885   6678887541            12355665553321  1122 22233321    23588999


Q ss_pred             CCCEEEEEccC
Q 015463          305 KGEFWVAIHCR  315 (406)
Q Consensus       305 ~G~lwv~~~~~  315 (406)
                      ||.||+++...
T Consensus       154 DG~LYvs~Gd~  164 (450)
T d1crua_         154 DQKIYYTIGDQ  164 (450)
T ss_dssp             TSCEEEEECCT
T ss_pred             CCCEEEEecCC
Confidence            99999998753

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.25  E-value=0.044  Score=46.58  Aligned_cols=158  Identities=11%  Similarity=0.086  Sum_probs=94.6

Q ss_pred             cCcccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc
Q 015463           65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD  144 (406)
Q Consensus        65 ~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~  144 (406)
                      .|.-..-.+++++++++.|.+++.||.|..|+....+......                    ...+....+++++ ++.
T Consensus        14 ~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~--------------------~h~~~V~~~~~~~-~~~   72 (317)
T d1vyhc1          14 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK--------------------GHTDSVQDISFDH-SGK   72 (317)
T ss_dssp             ECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC--------------------CCSSCEEEEEECT-TSS
T ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEe--------------------CCCCcEEEEeeec-ccc
Confidence            4444455789999999988999999999999865111111000                    0123456788888 565


Q ss_pred             EEEE-eCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCC
Q 015463          145 LYIA-DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPI  223 (406)
Q Consensus       145 L~Va-d~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  223 (406)
                      +.+. .....+..++....+.......    .......+.+.++++..++.+.                           
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~---------------------------  121 (317)
T d1vyhc1          73 LLASCSADMTIKLWDFQGFECIRTMHG----HDHNVSSVSIMPNGDHIVSASR---------------------------  121 (317)
T ss_dssp             EEEEEETTSCCCEEETTSSCEEECCCC----CSSCEEEEEECSSSSEEEEEET---------------------------
T ss_pred             ccccccccccccccccccccccccccc----ccccceeeeccCCCceEEeecc---------------------------
Confidence            5444 3334455666554443322111    1223456777888876665432                           


Q ss_pred             cccCCCCeEEEEeCCCCeEEEecc-cCCCcceEEEecCCCEEEEEeCCCCeEEEEEee
Q 015463          224 KITKDTGRVLKYDPTTKQTTVLLR-NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI  280 (406)
Q Consensus       224 ~~~~~~g~l~~~d~~t~~~~~~~~-~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~  280 (406)
                           ++.+..+|..+++...... .......++++++++.+..+. ..+.|..++..
T Consensus       122 -----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~v~~~~~~  173 (317)
T d1vyhc1         122 -----DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS-NDQTVRVWVVA  173 (317)
T ss_dssp             -----TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETT
T ss_pred             -----CcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEe-CCCeEEEEeec
Confidence                 3668888887776544332 233456788899988765544 45677777654

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.22  E-value=0.0093  Score=51.18  Aligned_cols=172  Identities=10%  Similarity=-0.021  Sum_probs=87.8

Q ss_pred             cCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEE
Q 015463           69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA  148 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Va  148 (406)
                      ....+++++++++.+.+++.+|.|..++...................-...+........................+..+
T Consensus       144 ~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (317)
T d1vyhc1         144 EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG  223 (317)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred             CcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEec
Confidence            34567788899998888999999998886611111111100000000000000000000000111111222212335555


Q ss_pred             eCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCC
Q 015463          149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKD  228 (406)
Q Consensus       149 d~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  228 (406)
                      ...+.|..++..+++...-...    ....+.++++.++|++.++.+.                                
T Consensus       224 ~~d~~i~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~s~~~--------------------------------  267 (317)
T d1vyhc1         224 SRDKTIKMWDVSTGMCLMTLVG----HDNWVRGVLFHSGGKFILSCAD--------------------------------  267 (317)
T ss_dssp             ETTSEEEEEETTTTEEEEEEEC----CSSCEEEEEECSSSSCEEEEET--------------------------------
T ss_pred             cCCCEEEEEECCCCcEEEEEeC----CCCCEEEEEECCCCCEEEEEEC--------------------------------
Confidence            5556678888887754321111    1134678899999987666432                                


Q ss_pred             CCeEEEEeCCCCeEEEeccc-CCCcceEEEecCCCEEEEEeCCCCeEEEE
Q 015463          229 TGRVLKYDPTTKQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKY  277 (406)
Q Consensus       229 ~g~l~~~d~~t~~~~~~~~~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~  277 (406)
                      +|.|..||..+++......+ ....+.+++++|++.++.+. ..+.|..+
T Consensus       268 dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s-~Dg~i~iW  316 (317)
T d1vyhc1         268 DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS-VDQTVKVW  316 (317)
T ss_dssp             TTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEE-TTSEEEEE
T ss_pred             CCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCCeEEEe
Confidence            47799999887764333322 23457889999998776544 34555443

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.00  E-value=0.0084  Score=54.78  Aligned_cols=146  Identities=14%  Similarity=0.121  Sum_probs=87.9

Q ss_pred             cceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeC
Q 015463           71 PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA  150 (406)
Q Consensus        71 pe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~  150 (406)
                      ..++++.++|. +.+|+.||.|..|+...-..+.......              ...........++|.+ +|++.++..
T Consensus       187 ~~~v~~s~dg~-lasgs~Dg~i~iwd~~~~~~~~~~~~~~--------------~l~~h~~~V~~l~~sp-dg~~l~sgs  250 (393)
T d1sq9a_         187 ATSVDISERGL-IATGFNNGTVQISELSTLRPLYNFESQH--------------SMINNSNSIRSVKFSP-QGSLLAIAH  250 (393)
T ss_dssp             CCEEEECTTSE-EEEECTTSEEEEEETTTTEEEEEEECCC-----------------CCCCCEEEEEECS-STTEEEEEE
T ss_pred             EEEEEECCCCE-EEEEeCCCcEEEEeeccccccccccccc--------------ccccccceEEEccccc-ccceeeeec
Confidence            56788888884 8899999999999976222221111000              0111123467899999 677665543


Q ss_pred             C-C---cEEEEeCCCCeEEE-cccccCC----c----ccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccC
Q 015463          151 Y-F---GLMKVGPEGGLATS-LATEAEG----V----PLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSL  217 (406)
Q Consensus       151 ~-~---gl~~~d~~~~~~~~-l~~~~~~----~----~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~  217 (406)
                      . +   .+..+|.++++... +......    .    -...++++++.+||++.++.+.                     
T Consensus       251 ~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~---------------------  309 (393)
T d1sq9a_         251 DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW---------------------  309 (393)
T ss_dssp             EETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET---------------------
T ss_pred             CCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECC---------------------
Confidence            2 2   26677888775432 2111000    0    1134788999999998887543                     


Q ss_pred             CCCCCCcccCCCCeEEEEeCCCCeEEEecccCC-----CcceEEEecCCCEE
Q 015463          218 NDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQ-----FPNGLSLSKDKSFF  264 (406)
Q Consensus       218 ~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~-----~~ngi~l~~d~~~l  264 (406)
                                 ++.|..+|.++++......+..     ....++++++++.+
T Consensus       310 -----------D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~  350 (393)
T d1sq9a_         310 -----------DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSL  350 (393)
T ss_dssp             -----------TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBC
T ss_pred             -----------CCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEE
Confidence                       4789999999987655443322     12356788888754

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=96.87  E-value=0.0074  Score=56.59  Aligned_cols=113  Identities=8%  Similarity=-0.008  Sum_probs=67.7

Q ss_pred             CCCCcEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCC-CEEEEeCCCc-hhhhcccccccccccccc
Q 015463          140 KKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTN-YQRRQMQKENIPLQLCSS  216 (406)
Q Consensus       140 ~~~g~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG-~ly~t~~~~~-~~~~~~~~~~~~~~~~~e  216 (406)
                      ++...|||++.. +.|.++|.++.+.........   ...+.++++.++| ++|++..+.. ....              
T Consensus        81 pDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~---g~gphgi~~spdg~t~YV~~~~~~~v~~~--------------  143 (441)
T d1qnia2          81 YDGKYLFINDKANTRVARIRLDIMKTDKITHIPN---VQAIHGLRLQKVPKTNYVFCNAEFVIPQP--------------  143 (441)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTT---CCCEEEEEECCSSBCCEEEEEECSCEESS--------------
T ss_pred             CCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCC---CCCccceEEeccCCEEEEEeccCCccccc--------------
Confidence            423469999876 679999999987654332211   2358889999998 4677653210 0000              


Q ss_pred             CCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCC
Q 015463          217 LNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS  270 (406)
Q Consensus       217 ~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~  270 (406)
                       .+...+........+..+|+.+.+......--..+.++++++|++.+|++...
T Consensus       144 -~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~n  196 (441)
T d1qnia2         144 -NDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYN  196 (441)
T ss_dssp             -CSSSCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESC
T ss_pred             -CcccccccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecC
Confidence             00000000111234567888887654333223468899999999999998654

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.088  Score=45.23  Aligned_cols=152  Identities=14%  Similarity=0.021  Sum_probs=83.2

Q ss_pred             cceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeC
Q 015463           71 PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA  150 (406)
Q Consensus        71 pe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~  150 (406)
                      ........++..+.+++.+|.|..|+......+......                    ......+.+++  +.|+.+..
T Consensus       178 ~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~--------------------~~~v~~~~~~~--~~l~s~s~  235 (342)
T d2ovrb2         178 NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGH--------------------QSLTSGMELKD--NILVSGNA  235 (342)
T ss_dssp             SCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCC--------------------CSCEEEEEEET--TEEEEEET
T ss_pred             cccccccCCCCEEEEEeCCCeEEEeecccceeeeEeccc--------------------ccceeEEecCC--CEEEEEcC
Confidence            344555567787889999999999987622222111100                    12234556653  46666666


Q ss_pred             CCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCC
Q 015463          151 YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTG  230 (406)
Q Consensus       151 ~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g  230 (406)
                      .+.|..+|....+......... .....+..+.  .++++.++.+.                                +|
T Consensus       236 d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~s~s~--------------------------------Dg  280 (342)
T d2ovrb2         236 DSTVKIWDIKTGQCLQTLQGPN-KHQSAVTCLQ--FNKNFVITSSD--------------------------------DG  280 (342)
T ss_dssp             TSCEEEEETTTCCEEEEECSTT-SCSSCEEEEE--ECSSEEEEEET--------------------------------TS
T ss_pred             CCEEEEEecccccccccccccc-eeeeceeecc--cCCCeeEEEcC--------------------------------CC
Confidence            6678889987665433221111 1111223333  34556665432                                47


Q ss_pred             eEEEEeCCCCeEEE-eccc----C-CCcceEEEecCCCEEEEEeCCC----CeEEEEEee
Q 015463          231 RVLKYDPTTKQTTV-LLRN----L-QFPNGLSLSKDKSFFVFCEGSV----GRLHKYWLI  280 (406)
Q Consensus       231 ~l~~~d~~t~~~~~-~~~~----~-~~~ngi~l~~d~~~l~v~~t~~----~~i~~~~~~  280 (406)
                      .|..||.++++... +...    . ...+.+++++|+..+ .+....    .+|+.++.+
T Consensus       281 ~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~l-a~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         281 TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVC-AVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             EEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEE-EEECSSSSSCCEEEEEECC
T ss_pred             EEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEE-EEEeCCCCCeeEEEEEeCC
Confidence            89999998886532 2211    1 123568888887644 333322    357777654

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.58  E-value=0.19  Score=43.26  Aligned_cols=68  Identities=19%  Similarity=0.113  Sum_probs=45.8

Q ss_pred             cCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCCCcEEE
Q 015463           77 DPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMK  156 (406)
Q Consensus        77 d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~~gl~~  156 (406)
                      +.+|+.|++|+.||.|..||....+.+.....                   + .+...++++.+ ++.|+.+...+.|..
T Consensus        20 ~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~-------------------H-~~~V~~l~~s~-~~~l~s~s~D~~i~i   78 (355)
T d1nexb2          20 QFEDNYVITGADDKMIRVYDSINKKFLLQLSG-------------------H-DGGVWALKYAH-GGILVSGSTDRTVRV   78 (355)
T ss_dssp             EEETTEEEEEETTTEEEEEETTTTEEEEEEEC-------------------C-SSCEEEEEEET-TTEEEEEETTCCEEE
T ss_pred             EECCCEEEEEeCCCeEEEEECCCCcEEEEEEC-------------------C-CCCEEEEEEcC-CCEEEEEeccccccc
Confidence            34577899999999999999762222221110                   1 24467899987 677777776677888


Q ss_pred             EeCCCCeEE
Q 015463          157 VGPEGGLAT  165 (406)
Q Consensus       157 ~d~~~~~~~  165 (406)
                      ++....+..
T Consensus        79 w~~~~~~~~   87 (355)
T d1nexb2          79 WDIKKGCCT   87 (355)
T ss_dssp             EETTTTEEE
T ss_pred             ccccccccc
Confidence            888766543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.19  E-value=0.29  Score=41.30  Aligned_cols=175  Identities=13%  Similarity=0.118  Sum_probs=96.1

Q ss_pred             eccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCC
Q 015463           63 KFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT  142 (406)
Q Consensus        63 ~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~  142 (406)
                      .+.+.-..-.++++++    |++|+.||.|..|+.....                        ..+ .+...++++.+ +
T Consensus         8 ~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~------------------------~~h-~~~V~~~~~~~-~   57 (287)
T d1pgua2           8 TISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH------------------------QDH-SNLIVSLDNSK-A   57 (287)
T ss_dssp             EECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE------------------------CCC-CSCEEEEECCS-T
T ss_pred             EECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC------------------------CCC-CCCEEEEEecC-C
Confidence            3455555567787764    9999999999999865210                        001 12345667665 5


Q ss_pred             CcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCC
Q 015463          143 GDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSP  222 (406)
Q Consensus       143 g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  222 (406)
                      +.++.+...+.+..++....   .+        ...+..+...++|.+.+....                          
T Consensus        58 ~~~~s~s~D~~v~~w~~~~~---~~--------~~~~~~~~~~~~~~~~~~~~~--------------------------  100 (287)
T d1pgua2          58 QEYSSISWDDTLKVNGITKH---EF--------GSQPKVASANNDGFTAVLTND--------------------------  100 (287)
T ss_dssp             TCCEEEETTTEEEETTEEEE---EC--------SSCEEEEEECSSSEEEEEETT--------------------------
T ss_pred             CeEEEEeecccccccccccc---cc--------ccceeeeeeccCCceEEEeec--------------------------
Confidence            55555544333333322110   00        113456677778877666532                          


Q ss_pred             CcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeee-cCCCCCCceE
Q 015463          223 IKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPGYPDNVR  301 (406)
Q Consensus       223 ~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~-~l~g~pd~i~  301 (406)
                             +.+..++..+++.......  .....+++++++.+.+.....+.+..|++...+  ....+. ...+....++
T Consensus       101 -------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~v~~~~  169 (287)
T d1pgua2         101 -------DDLLILQSFTGDIIKSVRL--NSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLE--VSFDLKTPLRAKPSYIS  169 (287)
T ss_dssp             -------SEEEEEETTTCCEEEEEEC--SSCEEEEEECSSEEEEEETTTSCEEEEETTEEE--EEEECSSCCSSCEEEEE
T ss_pred             -------ccceeeeccceeeeeeccc--cceeeeeeccCcceeeeccccceeeeeeccccc--eeeeeeeccCCceeEEE
Confidence                   4577777776665433221  233466778888887776655566666653211  001111 1223344577


Q ss_pred             ECCCCCEEEEEccC
Q 015463          302 TNEKGEFWVAIHCR  315 (406)
Q Consensus       302 ~d~~G~lwv~~~~~  315 (406)
                      ++++|.+.++....
T Consensus       170 ~s~~~~~l~~g~~d  183 (287)
T d1pgua2         170 ISPSETYIAAGDVM  183 (287)
T ss_dssp             ECTTSSEEEEEETT
T ss_pred             eccCcccccccccc
Confidence            88999865554433

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.08  E-value=0.13  Score=43.43  Aligned_cols=51  Identities=16%  Similarity=0.031  Sum_probs=34.9

Q ss_pred             CCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCC
Q 015463          229 TGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE  282 (406)
Q Consensus       229 ~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~  282 (406)
                      ...|+.+|++++..+.+...- ......+++||+.|++..  .+.|+++++++.
T Consensus       213 ~~~l~~~d~~g~~~~~lt~~~-~~~~~~~SpDG~~I~f~~--~~~l~~~d~~~g  263 (281)
T d1k32a2         213 FGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK--GGSIYIFNPDTE  263 (281)
T ss_dssp             SCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE--TTEEEEECTTTC
T ss_pred             ccceEEEeCCCCceEEeecCC-CcccccCcCCCCEEEEEe--CCEEEEEECCCC
Confidence            445888888888777664332 223346889999887754  467888887754

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.07  E-value=0.22  Score=42.76  Aligned_cols=149  Identities=11%  Similarity=-0.040  Sum_probs=82.5

Q ss_pred             cccCcceEEEcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEE
Q 015463           67 QIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY  146 (406)
Q Consensus        67 ~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~  146 (406)
                      ......++.++++++.++++..++.|..++............                    .......+++++  ..|+
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--------------------h~~~v~~~~~~~--~~l~  257 (355)
T d1nexb2         200 HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG--------------------HTALVGLLRLSD--KFLV  257 (355)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECC--------------------CSSCCCEEEECS--SEEE
T ss_pred             cccccccccccccceeeecccccceEEeeecccccccccccc--------------------cccccccccccc--ceee
Confidence            334456778888888889999999999888762222211110                    012245667753  4566


Q ss_pred             EEeCCCcEEEEeCCCCeEEEcccccCCcccccccce-EEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcc
Q 015463          147 IADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDL-DIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKI  225 (406)
Q Consensus       147 Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l-~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  225 (406)
                      .+...+.|..+|.++.........      ..+..+ +..+++++.++.+                              
T Consensus       258 ~~~~dg~i~iwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~g~------------------------------  301 (355)
T d1nexb2         258 SAAADGSIRGWDANDYSRKFSYHH------TNLSAITTFYVSDNILVSGS------------------------------  301 (355)
T ss_dssp             EECTTSEEEEEETTTCCEEEEEEC------TTCCCCCEEEECSSEEEEEE------------------------------
T ss_pred             eeecccccccccccccceeccccc------CCceEEEEEcCCCCEEEEEe------------------------------
Confidence            666666688889877653321111      112222 3455677766642                              


Q ss_pred             cCCCCeEEEEeCCCCeEEE-ecccC-CCcceEEEecCCCEEEEEeCCCCe--EEEEE
Q 015463          226 TKDTGRVLKYDPTTKQTTV-LLRNL-QFPNGLSLSKDKSFFVFCEGSVGR--LHKYW  278 (406)
Q Consensus       226 ~~~~g~l~~~d~~t~~~~~-~~~~~-~~~ngi~l~~d~~~l~v~~t~~~~--i~~~~  278 (406)
                         +|.|..||.++++... ...+. .....++++++  .++.+....++  ||.++
T Consensus       302 ---d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~--~~~~~~s~dg~~~l~~~d  353 (355)
T d1nexb2         302 ---ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK--TLVAAVEKDGQSFLEILD  353 (355)
T ss_dssp             ---TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT--EEEEEEESSSCEEEEEEE
T ss_pred             ---CCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC--eEEEEEECCCcEEEEEEe
Confidence               3679999998886432 11111 11235666654  45444333343  45444

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.04  E-value=0.28  Score=41.36  Aligned_cols=121  Identities=7%  Similarity=-0.013  Sum_probs=61.6

Q ss_pred             CcceEEEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhcccccccc
Q 015463          131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIP  210 (406)
Q Consensus       131 ~~p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~  210 (406)
                      +.+..+++++++..|.+++..+.|..+|..+++.....-.  + ....++++++.+++.........             
T Consensus       163 ~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~--~-h~~~v~~~~~~p~~~~~~~~~~~-------------  226 (287)
T d1pgua2         163 AKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWA--F-RTSKINAISWKPAEKGANEEEIE-------------  226 (287)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSC--C-CSSCEEEEEECCCC------CCS-------------
T ss_pred             CceeEEEeccCccccccccccccccceeeccccccccccc--c-cccccceeeecccccccccccCC-------------
Confidence            4467899998434467777777899999987765432111  1 11235566666554322221100             


Q ss_pred             ccccccCCCCCCCcccCCCCeEEEEeCCC-CeEEEeccc-CCCcceEEEecCCCEEEEEeCCCCeEEEEE
Q 015463          211 LQLCSSLNDPSPIKITKDTGRVLKYDPTT-KQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYW  278 (406)
Q Consensus       211 ~~~~~e~~~~~~~~~~~~~g~l~~~d~~t-~~~~~~~~~-~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~  278 (406)
                      ...++.         +..++.++.||.++ ++......+ ....+++++++|+. ++-+. ..+.|..++
T Consensus       227 ~~~l~s---------gs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~-l~s~g-~D~~v~iW~  285 (287)
T d1pgua2         227 EDLVAT---------GSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSG-ADACIKRWN  285 (287)
T ss_dssp             CCEEEE---------EETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEE-TTSCEEEEE
T ss_pred             CCeeEe---------ecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCE-EEEEE-CCCeEEEEE
Confidence            000000         23357788898765 333333332 23457888888874 43333 345555554

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.76  E-value=0.44  Score=39.82  Aligned_cols=85  Identities=11%  Similarity=0.171  Sum_probs=52.5

Q ss_pred             cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCe
Q 015463          153 GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGR  231 (406)
Q Consensus       153 gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~  231 (406)
                      -|+.+|.++++.+.|... .+    .....++.+||+ |.++.....                           ......
T Consensus        22 dl~~~d~~~g~~~~Lt~~-~~----~~~~p~~SPDG~~iaf~~~~~~---------------------------~~~~~~   69 (281)
T d1k32a2          22 DLWEHDLKSGSTRKIVSN-LG----VINNARFFPDGRKIAIRVMRGS---------------------------SLNTAD   69 (281)
T ss_dssp             EEEEEETTTCCEEEEECS-SS----EEEEEEECTTSSEEEEEEEEST---------------------------TCCEEE
T ss_pred             cEEEEECCCCCEEEEecC-CC----cccCEEECCCCCEEEEEEeeCC---------------------------CCCceE
Confidence            477777777777666432 11    234567899995 555532100                           011245


Q ss_pred             EEEEeCCCCeEEEecccC-------CCcceEEEecCCCEEEEEeC
Q 015463          232 VLKYDPTTKQTTVLLRNL-------QFPNGLSLSKDKSFFVFCEG  269 (406)
Q Consensus       232 l~~~d~~t~~~~~~~~~~-------~~~ngi~l~~d~~~l~v~~t  269 (406)
                      |+.++..+++.+.+....       ......++++|++.++++..
T Consensus        70 i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  114 (281)
T d1k32a2          70 LYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDA  114 (281)
T ss_dssp             EEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECT
T ss_pred             EEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEc
Confidence            999999999887764221       22356789999999888754

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.55  E-value=0.52  Score=39.75  Aligned_cols=76  Identities=16%  Similarity=0.046  Sum_probs=47.7

Q ss_pred             cCcceEEEcCCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-
Q 015463           69 QGPESMAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-  144 (406)
Q Consensus        69 ~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-  144 (406)
                      .+-.+|++.++|+.|.+++.||.|..|+.+   ....+....                   .+ .+....++|.++++. 
T Consensus        12 d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~-------------------~h-~~~V~~v~f~~~~~~~   71 (342)
T d1yfqa_          12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL-------------------RY-KHPLLCCNFIDNTDLQ   71 (342)
T ss_dssp             SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE-------------------EC-SSCEEEEEEEESSSEE
T ss_pred             CCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEec-------------------CC-CCCEEEEEEeCCCCCE
Confidence            345789999999989999999999888743   222221110                   01 233568888773444 


Q ss_pred             EEEEeCCCcEEEEeCCCCeE
Q 015463          145 LYIADAYFGLMKVGPEGGLA  164 (406)
Q Consensus       145 L~Vad~~~gl~~~d~~~~~~  164 (406)
                      |..+...+.+..++...+..
T Consensus        72 l~sg~~d~~v~~w~~~~~~~   91 (342)
T d1yfqa_          72 IYVGTVQGEILKVDLIGSPS   91 (342)
T ss_dssp             EEEEETTSCEEEECSSSSSS
T ss_pred             EEEcccccceeeeecccccc
Confidence            44455555688888765543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.48  E-value=0.11  Score=46.98  Aligned_cols=117  Identities=9%  Similarity=0.015  Sum_probs=72.0

Q ss_pred             ceEEEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccccCC--cccccccceEEcCCCCEEEEeCCCchhhhcccccccc
Q 015463          133 PLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEG--VPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIP  210 (406)
Q Consensus       133 p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~--~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~  210 (406)
                      +..+++.+ ++.|..+...+.|..+|.++++..........  .....++++++.+||++.++.+..             
T Consensus       187 ~~~v~~s~-dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D-------------  252 (393)
T d1sq9a_         187 ATSVDISE-RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS-------------  252 (393)
T ss_dssp             CCEEEECT-TSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEE-------------
T ss_pred             EEEEEECC-CCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCC-------------
Confidence            56788888 77666666666788999987754321111110  012357889999999888775320             


Q ss_pred             ccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecc-------------cC-CCcceEEEecCCCEEEEEeCCCCeEEE
Q 015463          211 LQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLR-------------NL-QFPNGLSLSKDKSFFVFCEGSVGRLHK  276 (406)
Q Consensus       211 ~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~-------------~~-~~~ngi~l~~d~~~l~v~~t~~~~i~~  276 (406)
                                      ...+.+..||.++++...-..             +. ...+.++++||++.| ++....+.|..
T Consensus       253 ----------------~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l-~S~s~D~~v~v  315 (393)
T d1sq9a_         253 ----------------NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL-CSAGWDGKLRF  315 (393)
T ss_dssp             ----------------TTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEE-EEEETTSEEEE
T ss_pred             ----------------CCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCee-EEECCCCEEEE
Confidence                            011346667887775433221             11 123568999999866 45455678888


Q ss_pred             EEee
Q 015463          277 YWLI  280 (406)
Q Consensus       277 ~~~~  280 (406)
                      ++++
T Consensus       316 Wd~~  319 (393)
T d1sq9a_         316 WDVK  319 (393)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            8875

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.27  E-value=0.14  Score=47.48  Aligned_cols=120  Identities=13%  Similarity=0.022  Sum_probs=74.0

Q ss_pred             EEEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccccC-CcccccccceEEcCCCC-EEEEeCCCchhhhcccccccccc
Q 015463          135 GLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAE-GVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRQMQKENIPLQ  212 (406)
Q Consensus       135 gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~-~~~~~~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~~~~~  212 (406)
                      .+...+ ++.++.. ..++++.+|..+++.+.+..... ......+.++.+.+||+ |.++....+    .|        
T Consensus        21 ~~~W~~-d~~~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~----~~--------   86 (470)
T d2bgra1          21 SLRWIS-DHEYLYK-QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVK----QW--------   86 (470)
T ss_dssp             CCEECS-SSEEEEE-SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEE----CS--------
T ss_pred             CCEeCC-CCEEEEE-cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcc----ee--------
Confidence            445555 5665443 35689999999988765543211 11123467889999996 333321100    01        


Q ss_pred             ccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCCeEEEEEeeCC
Q 015463          213 LCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE  282 (406)
Q Consensus       213 ~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~  282 (406)
                                  .....+.++.||.++++...+...-.....+.+||||+.+.+..  .+.++.++..+.
T Consensus        87 ------------r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~--~~~l~~~~~~~g  142 (470)
T d2bgra1          87 ------------RHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW--NNDIYVKIEPNL  142 (470)
T ss_dssp             ------------SSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE--TTEEEEESSTTS
T ss_pred             ------------eeccCceEEEEECCCCcccccccCCccccccccccCcceeeEee--cccceEEECCCC
Confidence                        12224678999999998766544333445688999999887764  457888776643

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.01  E-value=1.1  Score=39.85  Aligned_cols=84  Identities=14%  Similarity=0.331  Sum_probs=49.0

Q ss_pred             eEEEEeCCCCeEEEec-------ccCCCcceEEEe--cC-CCEEEEEeCCCCeEEEEEeeCCCCcce--eeee--cCCCC
Q 015463          231 RVLKYDPTTKQTTVLL-------RNLQFPNGLSLS--KD-KSFFVFCEGSVGRLHKYWLIGEKAGNL--EAFA--ILPGY  296 (406)
Q Consensus       231 ~l~~~d~~t~~~~~~~-------~~~~~~ngi~l~--~d-~~~l~v~~t~~~~i~~~~~~g~~~~~~--~~~~--~l~g~  296 (406)
                      .++.+|+..+.+..+.       ..+..+.|+|+.  ++ +....++....+++..|.+...+.+..  +...  .++..
T Consensus       102 ~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q  181 (353)
T d1h6la_         102 EIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQ  181 (353)
T ss_dssp             EEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSC
T ss_pred             EEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCc
Confidence            3677887766665543       223457799984  43 443334444467888887753332221  1111  35556


Q ss_pred             CCceEECCC-CCEEEEEcc
Q 015463          297 PDNVRTNEK-GEFWVAIHC  314 (406)
Q Consensus       297 pd~i~~d~~-G~lwv~~~~  314 (406)
                      +.++++|.+ ++|||+--.
T Consensus       182 ~EGCVvDde~~~LyisEE~  200 (353)
T d1h6la_         182 TEGMAADDEYGSLYIAEED  200 (353)
T ss_dssp             EEEEEEETTTTEEEEEETT
T ss_pred             cceEEEeCCCCcEEEecCc
Confidence            778888755 679999653

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.92  E-value=0.15  Score=47.10  Aligned_cols=96  Identities=9%  Similarity=-0.006  Sum_probs=52.5

Q ss_pred             ceEEEcCCCCeeEEEecCCEEEEEeCC-c-eeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCc-EEEE
Q 015463           72 ESMAFDPLGRGPYTGVADGRILFWDGL-K-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYIA  148 (406)
Q Consensus        72 e~i~~d~~g~~ly~g~~~g~I~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~-L~Va  148 (406)
                      .++.+-+++..+|  ..++.|+.++.. . -+.+...  .               ..........++.|++ +|+ |.++
T Consensus        20 ~~~~W~~d~~~~~--~~~~~~~~~~~~t~~~~~~~~~--~---------------~~~~~~~~i~~~~~Sp-Dg~~i~~~   79 (470)
T d2bgra1          20 YSLRWISDHEYLY--KQENNILVFNAEYGNSSVFLEN--S---------------TFDEFGHSINDYSISP-DGQFILLE   79 (470)
T ss_dssp             CCCEECSSSEEEE--ESSSCEEEEETTTCCEEEEECT--T---------------TTTTSSSCCCEEEECT-TSSEEEEE
T ss_pred             cCCEeCCCCEEEE--EcCCcEEEEECCCCCEEEEEch--h---------------hhhhccCccceeEECC-CCCEEEEE
Confidence            3455667777444  346779999877 2 2222111  0               1111123456788999 565 4443


Q ss_pred             eCC---------CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEE
Q 015463          149 DAY---------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYF  192 (406)
Q Consensus       149 d~~---------~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~  192 (406)
                      ...         .-++.+|.++++...+....     .......+.+||+..+
T Consensus        80 ~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~-----~~~~~~~~SPDG~~ia  127 (470)
T d2bgra1          80 YNYVKQWRHSYTASYDIYDLNKRQLITEERIP-----NNTQWVTWSPVGHKLA  127 (470)
T ss_dssp             EEEEECSSSCEEEEEEEEETTTTEECCSSCCC-----TTEEEEEECSSTTCEE
T ss_pred             ECCcceeeeccCceEEEEECCCCcccccccCC-----ccccccccccCcceee
Confidence            211         23678899998766543321     1244567788885333

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.48  E-value=0.72  Score=38.79  Aligned_cols=59  Identities=8%  Similarity=0.187  Sum_probs=41.7

Q ss_pred             cccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEE
Q 015463          178 FTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSL  257 (406)
Q Consensus       178 ~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l  257 (406)
                      .+++++++++|++.++.+.                                +|.|..||.++++...-.........+++
T Consensus       253 ~v~~l~~sp~~~~lasg~~--------------------------------Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~  300 (342)
T d1yfqa_         253 PVNSIEFSPRHKFLYTAGS--------------------------------DGIISCWNLQTRKKIKNFAKFNEDSVVKI  300 (342)
T ss_dssp             CEEEEEECTTTCCEEEEET--------------------------------TSCEEEEETTTTEEEEECCCCSSSEEEEE
T ss_pred             cceeEEecCCccEEEEECC--------------------------------CCEEEEEECCCCcEEEEecCCCCCEEEEE
Confidence            4678999999987776532                                57899999998765433333334456889


Q ss_pred             ecCCCEEEEEe
Q 015463          258 SKDKSFFVFCE  268 (406)
Q Consensus       258 ~~d~~~l~v~~  268 (406)
                      +++++.+.++.
T Consensus       301 s~~~~~l~~a~  311 (342)
T d1yfqa_         301 ACSDNILCLAT  311 (342)
T ss_dssp             EECSSEEEEEE
T ss_pred             EeCCCEEEEEE
Confidence            99998877654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.37  E-value=1.6  Score=40.31  Aligned_cols=148  Identities=8%  Similarity=0.044  Sum_probs=78.7

Q ss_pred             EEEeCCCCcEEEEeCCC-----cEEEEeCCCCeEEEcccccCCcccc-cccceEEcCCCC-EEEEeCCCchhhhcccccc
Q 015463          136 LRFDKKTGDLYIADAYF-----GLMKVGPEGGLATSLATEAEGVPLR-FTNDLDIDDEGN-VYFTDSSTNYQRRQMQKEN  208 (406)
Q Consensus       136 i~~d~~~g~L~Vad~~~-----gl~~~d~~~~~~~~l~~~~~~~~~~-~~~~l~~d~dG~-ly~t~~~~~~~~~~~~~~~  208 (406)
                      +...+ ++++++....+     .+..+|..+++.+.+.......=.. ......+.+||. +++-..+.           
T Consensus       260 ~~W~~-d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se-----------  327 (465)
T d1xfda1         260 VKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIP-----------  327 (465)
T ss_dssp             EEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEEC-----------
T ss_pred             eEEcC-CCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeee-----------
Confidence            44555 67777664432     4888999999877665432211001 112346777774 33221110           


Q ss_pred             ccccccccCCCCCCCcccCCCCeEEEEe-------CCCCeEEEecccCCCcc-eEEEecCCCEEEEEeCC----CCeEEE
Q 015463          209 IPLQLCSSLNDPSPIKITKDTGRVLKYD-------PTTKQTTVLLRNLQFPN-GLSLSKDKSFFVFCEGS----VGRLHK  276 (406)
Q Consensus       209 ~~~~~~~e~~~~~~~~~~~~~g~l~~~d-------~~t~~~~~~~~~~~~~n-gi~l~~d~~~l~v~~t~----~~~i~~  276 (406)
                                       ..+.+.++.++       ..++..+.+..+..... -++++.+++.+|++.+.    ...|++
T Consensus       328 -----------------~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~  390 (465)
T d1xfda1         328 -----------------QGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYS  390 (465)
T ss_dssp             -----------------CSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred             -----------------ecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEE
Confidence                             11123465553       22223333333322222 34688899999987653    345899


Q ss_pred             EEeeCCCCcceeeee----cCCCCCCceEECCCCCEEEEEccC
Q 015463          277 YWLIGEKAGNLEAFA----ILPGYPDNVRTNEKGEFWVAIHCR  315 (406)
Q Consensus       277 ~~~~g~~~~~~~~~~----~l~g~pd~i~~d~~G~lwv~~~~~  315 (406)
                      ++++|....+  ...    +..| -..+.++++|..+|-+..+
T Consensus       391 v~l~g~~~~~--~lt~~~~~~~~-~~~~~~S~~~~y~v~~~s~  430 (465)
T d1xfda1         391 ANTVGNFNRQ--CLSCDLVENCT-YFSASFSHSMDFFLLKCEG  430 (465)
T ss_dssp             ECSSTTCCCB--CSSTTSSSSCC-CCEEEECTTSSEEEEECCS
T ss_pred             EECCCCCcce--eeccccCCCCC-EEEEEECCCCCEEEEEeec
Confidence            8887643221  111    1112 2356789999998877665

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=94.13  E-value=1.5  Score=39.66  Aligned_cols=108  Identities=14%  Similarity=0.160  Sum_probs=59.6

Q ss_pred             cceEEEcCC-CCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCC-CcEE
Q 015463           71 PESMAFDPL-GRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT-GDLY  146 (406)
Q Consensus        71 pe~i~~d~~-g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~-g~L~  146 (406)
                      ..+|+++|. .+.+|+++..|+|+|-+..  .|+.+.....                ...........|++|+.+ +.+|
T Consensus        14 ~~~i~~~P~~~~~~ya~~~~gGv~~S~dgG~tW~~~~~~~~----------------~~~~~~~~~~~iavdp~np~~vy   77 (427)
T d2ebsa1          14 ITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIE----------------AQDMNIMGTESIALDPNNPDRLY   77 (427)
T ss_dssp             EEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCC----------------GGGGGGCSEEEEEEETTEEEEEE
T ss_pred             EEEEEECCCCCCEEEEEecCCCEEEEECCCCceEECCCCCC----------------CCCcccccEeEEEECCCCCCEEE
Confidence            457888864 4569999988899988654  6665422110                000112234578999833 4688


Q ss_pred             EEeCC------CcEEEEeCCCCe-EEEcccccC----CcccccccceEEcCC--CCEEEEeC
Q 015463          147 IADAY------FGLMKVGPEGGL-ATSLATEAE----GVPLRFTNDLDIDDE--GNVYFTDS  195 (406)
Q Consensus       147 Vad~~------~gl~~~d~~~~~-~~~l~~~~~----~~~~~~~~~l~~d~d--G~ly~t~~  195 (406)
                      ++...      .+|++= .++|+ .+.+.....    .........|++++.  ..+|++..
T Consensus        78 ~~tg~~~~~~~~gi~~S-~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~  138 (427)
T d2ebsa1          78 LAQGRYVGDEWAAFYVS-EDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTR  138 (427)
T ss_dssp             EEECSCTTSSCCEEEEE-SSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECS
T ss_pred             EEeccccCCcCccEEEe-CCCCccceeecCCcccCccccCccceeEEEECCCccCccccccc
Confidence            88632      356544 44443 333322111    011123456888874  36888754

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=94.09  E-value=0.71  Score=37.21  Aligned_cols=119  Identities=18%  Similarity=0.114  Sum_probs=71.5

Q ss_pred             ccccccceeccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC-----ceeEEEeecCCCccccCCCCCcccccccCCc
Q 015463           55 NLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL-----KWTDFAFTSNNRSELCNPKPIATSYLKNEHI  129 (406)
Q Consensus        55 ~~l~~~~~~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (406)
                      +=+..+.++..+++..-.-|++.|+|+ ||.-. ++.+|+=...     .|...+.....    |.              
T Consensus        26 n~~~rA~~lGk~g~~n~~~i~fsP~G~-LyaVr-~~~lY~Gp~~s~~nq~wf~~atrIG~----gg--------------   85 (235)
T d1tl2a_          26 NWLARATLIGKGGWSNFKFLFLSPGGE-LYGVL-NDKIYKGTPPTHDNDNWMGRAKKIGN----GG--------------   85 (235)
T ss_dssp             CHHHHSEEEESSSCTTCSEEEECTTSC-EEEEE-TTEEEEESCCCSTTCCHHHHCEEEEC----SC--------------
T ss_pred             cccchhhhcCcccccceeEEEECCCCc-EEEEE-CCeEEECCCCCcchHHHHHhhhhccc----Cc--------------
Confidence            345667777777777777899999998 78654 4577765433     11000000000    00              


Q ss_pred             CCcceEEEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEcccc---cCCcccccccceEEcCCCCEEEEeC
Q 015463          130 CGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATE---AEGVPLRFTNDLDIDDEGNVYFTDS  195 (406)
Q Consensus       130 ~~~p~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~~---~~~~~~~~~~~l~~d~dG~ly~t~~  195 (406)
                      =++=.-+.||| +|-||+.+. ..|++=.|.+.+.......   .....-+...-|.+|++|.||.-++
T Consensus        86 Wn~FkflffdP-~G~LyaVt~-~~LYr~~pPtn~~q~W~g~a~~vG~~gw~df~~lFFdP~G~LYaV~~  152 (235)
T d1tl2a_          86 WNQFQFLFFDP-NGYLYAVSK-DKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVHG  152 (235)
T ss_dssp             GGGCSEEEECT-TSCEEEEET-TEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEET
T ss_pred             ccceEEEEECC-CceEEEecC-cceecCCcCcccchhhhhhhhhhccCCcCceeEEEECCCceEEEEEC
Confidence            01223578999 899999885 5899988776543332211   1111223344577899999998864

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=93.89  E-value=2  Score=38.11  Aligned_cols=67  Identities=12%  Similarity=0.125  Sum_probs=40.5

Q ss_pred             CCcceEEEecCCCEEEEEeCCCCeEEEEEeeCCCCcceeeeec-----CCCCCCceEE--CCCCC-EEEEEccCCc
Q 015463          250 QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI-----LPGYPDNVRT--NEKGE-FWVAIHCRRS  317 (406)
Q Consensus       250 ~~~ngi~l~~d~~~l~v~~t~~~~i~~~~~~g~~~~~~~~~~~-----l~g~pd~i~~--d~~G~-lwv~~~~~~~  317 (406)
                      ..+.|++++.+.+.||++|. ..++|+|..+-........+..     +.+=|.|+++  .++|. +||+...+..
T Consensus       180 ~q~EGCVvDde~~~LyisEE-~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n  254 (353)
T d1h6la_         180 SQTEGMAADDEYGSLYIAEE-DEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNS  254 (353)
T ss_dssp             SCEEEEEEETTTTEEEEEET-TTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGT
T ss_pred             CccceEEEeCCCCcEEEecC-ccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCC
Confidence            34679999999999999987 5799999976322222222211     2222456653  33433 7777655533

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=93.03  E-value=1.3  Score=42.10  Aligned_cols=73  Identities=15%  Similarity=0.178  Sum_probs=42.9

Q ss_pred             CCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcCCc-ceEEEEeCCCCcEEEEeCCCcEEE
Q 015463           79 LGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGR-PLGLRFDKKTGDLYIADAYFGLMK  156 (406)
Q Consensus        79 ~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~gi~~d~~~g~L~Vad~~~gl~~  156 (406)
                      +|. +|+++.++.|+.+|.+ .-.............           .....+.. ..+++..  ++.+|+++....|+.
T Consensus        66 ~g~-vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~-----------~~~~~~~~~~~~~~~~--~~~v~~~~~~g~l~A  131 (560)
T d1kv9a2          66 DGV-IYTSMSWSRVIAVDAASGKELWRYDPEVAKVK-----------ARTSCCDAVNRGVALW--GDKVYVGTLDGRLIA  131 (560)
T ss_dssp             TTE-EEEEEGGGEEEEEETTTCCEEEEECCCCCGGG-----------GGGCTTCSCCCCCEEE--BTEEEEECTTSEEEE
T ss_pred             CCE-EEEECCCCeEEEEeCCCCCEEEEECCCCCccc-----------cccccccccccCccee--CCeEEEEeCCCEEEE
Confidence            455 9999999999999987 322222211000000           00001111 1244554  578999998888999


Q ss_pred             EeCCCCeEE
Q 015463          157 VGPEGGLAT  165 (406)
Q Consensus       157 ~d~~~~~~~  165 (406)
                      +|.++|+..
T Consensus       132 lda~tG~~~  140 (560)
T d1kv9a2         132 LDAKTGKAI  140 (560)
T ss_dssp             EETTTCCEE
T ss_pred             EECCCCcEE
Confidence            999888653

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=91.48  E-value=3.6  Score=37.36  Aligned_cols=108  Identities=6%  Similarity=-0.056  Sum_probs=60.1

Q ss_pred             cEEEEeCC-CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCC-CEEEEeCC-CchhhhccccccccccccccCCCC
Q 015463          144 DLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSS-TNYQRRQMQKENIPLQLCSSLNDP  220 (406)
Q Consensus       144 ~L~Vad~~-~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG-~ly~t~~~-~~~~~~~~~~~~~~~~~~~e~~~~  220 (406)
                      .|||.|.. .+|.++|.++-+...+.....+   ..+.++...+++ +.|+...+ ...+..+   .|..+.+.      
T Consensus       101 ylFVNDkan~RVAvIdl~~fkt~kIi~iPn~---~~~HG~r~~~~p~T~YV~~~~e~~vP~pn---dg~~l~d~------  168 (459)
T d1fwxa2         101 FLFMNDKANTRVARVRCDVMKCDAILEIPNA---KGIHGLRPQKWPRSNYVFCNGEDETPLVN---DGTNMEDV------  168 (459)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSC---CSEEEEEECCSSBCSEEEEEECSCEESSC---SSSSTTCG------
T ss_pred             EEEEEcCCCceEEEEECcceeeeEEEecCCC---CCCceeecccCCCeEEEEccCccccccCC---CCccccch------
Confidence            48999865 6799999988776544332111   234555655544 45554321 1111100   11111111      


Q ss_pred             CCCcccCCCCeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEe
Q 015463          221 SPIKITKDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCE  268 (406)
Q Consensus       221 ~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~  268 (406)
                           ....+.+-.+|.++.++..-..--..+.++++++||++++++.
T Consensus       169 -----~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~Ts  211 (459)
T d1fwxa2         169 -----ANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTS  211 (459)
T ss_dssp             -----G-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEE
T ss_pred             -----hhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEe
Confidence                 1112456788999887654332234677899999999998875

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.85  E-value=6.7  Score=36.90  Aligned_cols=41  Identities=20%  Similarity=0.272  Sum_probs=27.9

Q ss_pred             cceEEEEEECCC-CCEEEEEECCCCCeeeceeEEEEeCCEEEEe
Q 015463          351 RLHAMAVKYSPE-GKILQVLEDSKGKVVKAISEVEEKDGKLWMG  393 (406)
Q Consensus       351 ~~~~~v~~~d~~-g~~~~~~~~~~g~~~~~~s~~~~~~g~Ly~G  393 (406)
                      ...+.+.+||.+ |+++..+.-+.+.....+  ..+.+|+.|++
T Consensus       482 ~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~--ty~~dGkqYi~  523 (571)
T d2ad6a1         482 TLDGYLKALDNKDGKELWNFKMPSGGIGSPM--TYSFKGKQYIG  523 (571)
T ss_dssp             CTTSEEEEEETTTCCEEEEEECSSCCCSCCE--EEEETTEEEEE
T ss_pred             CCCCeEEEEECCCCcEEEEEECCCCceecce--EEEECCEEEEE
Confidence            556678889865 899999876554322222  23679999984

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.64  E-value=1.3  Score=42.23  Aligned_cols=122  Identities=15%  Similarity=0.086  Sum_probs=67.0

Q ss_pred             CCCeeEEEec-CCEEEEEeC-C-ceeEEEeecCCCccccCCCCCcccccccCCcCC-cceEEEEeCCCCcEEEEeCCCcE
Q 015463           79 LGRGPYTGVA-DGRILFWDG-L-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICG-RPLGLRFDKKTGDLYIADAYFGL  154 (406)
Q Consensus        79 ~g~~ly~g~~-~g~I~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~gi~~d~~~g~L~Vad~~~gl  154 (406)
                      +|. +|+++. ++.|+.+|. + .-............ .          .....+. ...|+++.  ++++|+++....|
T Consensus        62 ~g~-vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~-~----------~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l  127 (571)
T d2ad6a1          62 GDM-MYVHSAFPNNTYALNLNDPGKIVWQHKPKQDAS-T----------KAVMCCDVVDRGLAYG--AGQIVKKQANGHL  127 (571)
T ss_dssp             TTE-EEEECSTTTCEEEEETTCTTSEEEEECCCCCGG-G----------GGGCTTCSCCCCCEEE--TTEEEEECTTSEE
T ss_pred             CCE-EEEecCCCCeEEEEeCCCCCceEEEecCCCCcc-c----------ccccccCcCCCcceee--CCeEEEEeCCCcE
Confidence            455 898875 688999985 3 32222221110000 0          0000011 11356666  6899999988889


Q ss_pred             EEEeCCCCeEEEcccc---cCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCe
Q 015463          155 MKVGPEGGLATSLATE---AEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGR  231 (406)
Q Consensus       155 ~~~d~~~~~~~~l~~~---~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~  231 (406)
                      +.+|.++|+..--...   ..+.....+  -.+. ++.+|++.++..                           ....|.
T Consensus       128 ~alda~tG~~~w~~~~~~~~~~~~~t~~--p~v~-~~~vivg~~~~~---------------------------~~~~G~  177 (571)
T d2ad6a1         128 LALDAKTGKINWEVEVCDPKVGSTLTQA--PFVA-KDTVLMGCSGAE---------------------------LGVRGA  177 (571)
T ss_dssp             EEEETTTCCEEEEEECCCGGGTCBCCSC--CEEE-TTEEEEECBCGG---------------------------GTCCCE
T ss_pred             Eeeehhhhhhhccccccccccccceeec--CeEe-CCeEEEeecccc---------------------------ccccCc
Confidence            9999999975321111   111111111  1222 578888875421                           122478


Q ss_pred             EEEEeCCCCeEEE
Q 015463          232 VLKYDPTTKQTTV  244 (406)
Q Consensus       232 l~~~d~~t~~~~~  244 (406)
                      |..||..||+..-
T Consensus       178 v~a~D~~TG~~~W  190 (571)
T d2ad6a1         178 VNAFDLKTGELKW  190 (571)
T ss_dssp             EEEEETTTCCEEE
T ss_pred             EEEEECCCCcEEE
Confidence            9999999997654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.08  E-value=1.2  Score=41.10  Aligned_cols=111  Identities=10%  Similarity=-0.045  Sum_probs=64.2

Q ss_pred             CcEEEEeCCCcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCC-EEEEe-CCCchhhhccccccccccccccCCCC
Q 015463          143 GDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTD-SSTNYQRRQMQKENIPLQLCSSLNDP  220 (406)
Q Consensus       143 g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~-ly~t~-~~~~~~~~~~~~~~~~~~~~~e~~~~  220 (406)
                      +.++.-+..+.|+.+|.++++.+.+.....- ....+.+..+.+||+ |++.. ...                       
T Consensus        28 ~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~SpD~~~vl~~~~~~~-----------------------   83 (465)
T d1xfda1          28 TEFIYREQKGTVRLWNVETNTSTVLIEGKKI-ESLRAIRYEISPDREYALFSYNVEP-----------------------   83 (465)
T ss_dssp             SCBCCCCSSSCEEEBCGGGCCCEEEECTTTT-TTTTCSEEEECTTSSEEEEEESCCC-----------------------
T ss_pred             CcEEEEeCCCcEEEEECCCCCEEEEEcCccc-cccccceeEECCCCCeEEEEEcccc-----------------------
Confidence            3333333445688888877765554432111 112345667889985 44443 221                       


Q ss_pred             CCCcccCCCCeEEEEeCCCCeEEEecccCCCc---ceEEEecCCCEEEEEeCCCCeEEEEEeeC
Q 015463          221 SPIKITKDTGRVLKYDPTTKQTTVLLRNLQFP---NGLSLSKDKSFFVFCEGSVGRLHKYWLIG  281 (406)
Q Consensus       221 ~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~~---ngi~l~~d~~~l~v~~t~~~~i~~~~~~g  281 (406)
                        +|.....+.++.||..+++.+.+.......   .-..+||||+.+.++.  .+.|+..+..+
T Consensus        84 --~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~--~~nl~~~~~~~  143 (465)
T d1xfda1          84 --IYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF--ENNIYYCAHVG  143 (465)
T ss_dssp             --CSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE--TTEEEEESSSS
T ss_pred             --eeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe--cceEEEEecCC
Confidence              122334578999999999887764322111   2356889998886664  45777776554

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=88.63  E-value=2.1  Score=40.64  Aligned_cols=124  Identities=14%  Similarity=0.081  Sum_probs=66.9

Q ss_pred             CCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcC-CcceEEEEeCCCCcEEEEeCCCcEEE
Q 015463           79 LGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHIC-GRPLGLRFDKKTGDLYIADAYFGLMK  156 (406)
Q Consensus        79 ~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~gi~~d~~~g~L~Vad~~~gl~~  156 (406)
                      +|. +|+++.+++|+.+|.+ .-.............           .....+ ....++++.  ++++|+++....|+.
T Consensus        77 ~g~-vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~-----------~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~a  142 (573)
T d1kb0a2          77 DGI-MYVSASWSVVHAIDTRTGNRIWTYDPQIDRST-----------GFKGCCDVVNRGVALW--KGKVYVGAWDGRLIA  142 (573)
T ss_dssp             TTE-EEEECGGGCEEEEETTTTEEEEEECCCCCGGG-----------GGGSSSCSCCCCCEEE--TTEEEEECTTSEEEE
T ss_pred             CCE-EEEECCCCeEEEEeCCCCCeEEEeCCCCCccc-----------ccccccccccccceEE--CCcEEEEecccceee
Confidence            455 9999999999999987 333332211000000           000000 111245555  578999998888999


Q ss_pred             EeCCCCeEEEcccccCCccc-ccccceEEcCCCCEEEEeCCCchhhhccccccccccccccCCCCCCCcccCCCCeEEEE
Q 015463          157 VGPEGGLATSLATEAEGVPL-RFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPLQLCSSLNDPSPIKITKDTGRVLKY  235 (406)
Q Consensus       157 ~d~~~~~~~~l~~~~~~~~~-~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~  235 (406)
                      +|.++|+..--....++... .....--+--++.++++.+...                           ....|.|..+
T Consensus       143 lda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~---------------------------~~~~G~v~a~  195 (573)
T d1kb0a2         143 LDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAE---------------------------YGVRGYITAY  195 (573)
T ss_dssp             EETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTT---------------------------TCCBCEEEEE
T ss_pred             eccccccceecccCccCCcceEEeecceEEEeccEEEeecccc---------------------------ccccceEEEE
Confidence            99999875321111111110 0111111112677888764311                           1224789999


Q ss_pred             eCCCCeEE
Q 015463          236 DPTTKQTT  243 (406)
Q Consensus       236 d~~t~~~~  243 (406)
                      |.+||+..
T Consensus       196 D~~TG~~~  203 (573)
T d1kb0a2         196 DAETGERK  203 (573)
T ss_dssp             ETTTCCEE
T ss_pred             ecCCccce
Confidence            99999764

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=86.96  E-value=7.8  Score=33.50  Aligned_cols=83  Identities=14%  Similarity=0.046  Sum_probs=53.5

Q ss_pred             eEEEEeCCCCcEEEEeCC--CcEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhhccccccccc
Q 015463          134 LGLRFDKKTGDLYIADAY--FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRQMQKENIPL  211 (406)
Q Consensus       134 ~gi~~d~~~g~L~Vad~~--~gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~~~~~~~~~~  211 (406)
                      .+.++.. +|.++++-..  +.+.++|+.+...+.+.....   ...-...++..||.+|+.-.....            
T Consensus        79 ~~~~~~~-~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~---~r~~~~~~~~~dG~v~v~GG~~~~------------  142 (387)
T d1k3ia3          79 PGISMDG-NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQV---ARGYQSSATMSDGRVFTIGGSWSG------------  142 (387)
T ss_dssp             CEEEECT-TSCEEEECSSSTTCEEEEEGGGTEEEECCCCSS---CCSSCEEEECTTSCEEEECCCCCS------------
T ss_pred             eEEEEec-CCcEEEeecCCCcceeEecCccCcccccccccc---cccccceeeecCCceeeecccccc------------
Confidence            3567777 7888887532  468999999887766543211   122345677789999987532100            


Q ss_pred             cccccCCCCCCCcccCCCCeEEEEeCCCCeEEEec
Q 015463          212 QLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLL  246 (406)
Q Consensus       212 ~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~  246 (406)
                                    ......+.+||+.+++.+.+.
T Consensus       143 --------------~~~~~~v~~yd~~~~~W~~~~  163 (387)
T d1k3ia3         143 --------------GVFEKNGEVYSPSSKTWTSLP  163 (387)
T ss_dssp             --------------SSCCCCEEEEETTTTEEEEET
T ss_pred             --------------ccccceeeeecCCCCceeecC
Confidence                          122345899999999887653

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=86.78  E-value=4.8  Score=35.96  Aligned_cols=66  Identities=18%  Similarity=0.181  Sum_probs=43.7

Q ss_pred             CCcceEEEEeCCC-CcEEEEeCCCcEEEEeCCCCeEEEcccccC--CcccccccceEEcCC--CCEEEEeC
Q 015463          130 CGRPLGLRFDKKT-GDLYIADAYFGLMKVGPEGGLATSLATEAE--GVPLRFTNDLDIDDE--GNVYFTDS  195 (406)
Q Consensus       130 ~~~p~gi~~d~~~-g~L~Vad~~~gl~~~d~~~~~~~~l~~~~~--~~~~~~~~~l~~d~d--G~ly~t~~  195 (406)
                      .++..+|+++|.+ +.+|++...+||++-+-.+...+.+.....  ......+.+|++|+.  ..||+++.
T Consensus        11 gg~~~~i~~~P~~~~~~ya~~~~gGv~~S~dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg   81 (427)
T d2ebsa1          11 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQG   81 (427)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEEC
T ss_pred             CCcEEEEEECCCCCCEEEEEecCCCEEEEECCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEec
Confidence            6788999999843 458888876799987655555555432211  122335678999986  47898864

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=86.46  E-value=3.9  Score=35.65  Aligned_cols=115  Identities=12%  Similarity=0.108  Sum_probs=67.7

Q ss_pred             EEEEeCCCCcEEEEeCC------C------cEEEEeCCCCeEEEcccccCCcccccccceEEcCCCCEEEEeCCCchhhh
Q 015463          135 GLRFDKKTGDLYIADAY------F------GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRR  202 (406)
Q Consensus       135 gi~~d~~~g~L~Vad~~------~------gl~~~d~~~~~~~~l~~~~~~~~~~~~~~l~~d~dG~ly~t~~~~~~~~~  202 (406)
                      ..+....+|++||-...      +      -+.++|+.+++.+....... ....+....++..+|.+|+.-..      
T Consensus        23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~-~~~~~~~~~~~~~~g~i~v~Gg~------   95 (387)
T d1k3ia3          23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT-KHDMFCPGISMDGNGQIVVTGGN------   95 (387)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC-SCCCSSCEEEECTTSCEEEECSS------
T ss_pred             EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCC-CcccceeEEEEecCCcEEEeecC------
Confidence            33444447888875321      1      25689999887544322111 11234456678899999997532      


Q ss_pred             ccccccccccccccCCCCCCCcccCCCCeEEEEeCCCCeEEEeccc--CCCcceEEEecCCCEEEEEeCCC-----CeEE
Q 015463          203 QMQKENIPLQLCSSLNDPSPIKITKDTGRVLKYDPTTKQTTVLLRN--LQFPNGLSLSKDKSFFVFCEGSV-----GRLH  275 (406)
Q Consensus       203 ~~~~~~~~~~~~~e~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~--~~~~ngi~l~~d~~~l~v~~t~~-----~~i~  275 (406)
                                               ....+.+||+.+++.+.....  -....+.++..|++.+++.....     ..++
T Consensus        96 -------------------------~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~  150 (387)
T d1k3ia3          96 -------------------------DAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGE  150 (387)
T ss_dssp             -------------------------STTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEE
T ss_pred             -------------------------CCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceee
Confidence                                     124588999999887765322  12234677778887655543211     3578


Q ss_pred             EEEeeC
Q 015463          276 KYWLIG  281 (406)
Q Consensus       276 ~~~~~g  281 (406)
                      +|++..
T Consensus       151 ~yd~~~  156 (387)
T d1k3ia3         151 VYSPSS  156 (387)
T ss_dssp             EEETTT
T ss_pred             eecCCC
Confidence            887653

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=86.42  E-value=13  Score=34.63  Aligned_cols=41  Identities=22%  Similarity=0.300  Sum_probs=27.1

Q ss_pred             cceEEEEEECCC-CCEEEEEECCCCCeeeceeEEEEeCCEEEEe
Q 015463          351 RLHAMAVKYSPE-GKILQVLEDSKGKVVKAISEVEEKDGKLWMG  393 (406)
Q Consensus       351 ~~~~~v~~~d~~-g~~~~~~~~~~g~~~~~~s~~~~~~g~Ly~G  393 (406)
                      ...+.+.+||.+ |+++..+.-+.+.....  ...+.+|+-|+.
T Consensus       476 ~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P--~ty~~dGkqyv~  517 (560)
T d1kv9a2         476 TAAGQMHAYSADKGEALWQFEAQSGIVAAP--MTFELAGRQYVA  517 (560)
T ss_dssp             CTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTEEEEE
T ss_pred             CCCCcEEEEECCCCcEeEEEECCCCccccC--EEEEECCEEEEE
Confidence            555678889865 99999988766533222  234678877764

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=85.37  E-value=2.9  Score=33.48  Aligned_cols=120  Identities=13%  Similarity=0.017  Sum_probs=68.4

Q ss_pred             cccccceeccCcccCcceEEEcCCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCccccCCCCCcccccccCCcCCcc
Q 015463           56 LLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRP  133 (406)
Q Consensus        56 ~l~~~~~~~~~~~~gpe~i~~d~~g~~ly~g~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  133 (406)
                      -...+.++..+.-.-=.-+.+||+|- ||+-+ ++.|+|=.+.  .-.......   .+            .-...++.-
T Consensus        74 wf~~atrIG~ggWn~FkflffdP~G~-LyaVt-~~~LYr~~pPtn~~q~W~g~a---~~------------vG~~gw~df  136 (235)
T d1tl2a_          74 WMGRAKKIGNGGWNQFQFLFFDPNGY-LYAVS-KDKLYKASPPQSDTDNWIARA---TE------------VGSGGWSGF  136 (235)
T ss_dssp             HHHHCEEEECSCGGGCSEEEECTTSC-EEEEE-TTEEEEESCCCSTTCCHHHHS---EE------------EECSSGGGE
T ss_pred             HHHhhhhcccCcccceEEEEECCCce-EEEec-CcceecCCcCcccchhhhhhh---hh------------hccCCcCce
Confidence            35666677665544456788999997 78777 5789988654  100000000   00            000113334


Q ss_pred             eEEEEeCCCCcEEEEeCCCcEEEEeCCCCeEEEccc---ccCCcccccccceEEcCCCCEEEEe
Q 015463          134 LGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLAT---EAEGVPLRFTNDLDIDDEGNVYFTD  194 (406)
Q Consensus       134 ~gi~~d~~~g~L~Vad~~~gl~~~d~~~~~~~~l~~---~~~~~~~~~~~~l~~d~dG~ly~t~  194 (406)
                      .-|.||| +|.||-.... .|++-.|..+.-.....   ......-..+.-+.+.+||+||...
T Consensus       137 ~~lFFdP-~G~LYaV~~~-~l~k~~pP~~~~d~WL~~st~igr~~w~~~~fi~Fs~dG~L~~v~  198 (235)
T d1tl2a_         137 KFLFFHP-NGYLYAVHGQ-QFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ  198 (235)
T ss_dssp             EEEEECT-TSCEEEEETT-EEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE
T ss_pred             eEEEECC-CceEEEEECC-cEEEcCCCCCCCchhhhhhhhhccCcccCceEEEECCCCcEEEEe
Confidence            5689999 9999988654 68887765443111111   1111112234578899999999874

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.37  E-value=6.9  Score=36.87  Aligned_cols=70  Identities=10%  Similarity=0.119  Sum_probs=43.2

Q ss_pred             CCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCccccCCCCCcccccccCCcC-CcceEEEEeCCCCcEEEEeCCCcEEE
Q 015463           79 LGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHIC-GRPLGLRFDKKTGDLYIADAYFGLMK  156 (406)
Q Consensus        79 ~g~~ly~g~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~gi~~d~~~g~L~Vad~~~gl~~  156 (406)
                      +|. +|+++.+++|+.+|.+ .-......... ....            ...+ ....|++..  ++.+++++....|+.
T Consensus        68 ~g~-vy~~t~~~~v~AlDa~TG~~lW~~~~~~-~~~~------------~~~~~~~~rg~a~~--~~~i~~~t~~~~l~a  131 (582)
T d1flga_          68 DGV-IYVTASYSRLFALDAKTGKRLWTYNHRL-PDDI------------RPCCDVVNRGAAIY--GDKVFFGTLDASVVA  131 (582)
T ss_dssp             TTE-EEEEETTTEEEEEESSSCCEEEEEECCC-CTTC------------CCSSCSCCCCCEEE--TTEEEEEETTTEEEE
T ss_pred             CCE-EEEeCCCCeEEEEeCCCCCeEEEEcCCC-CCcc------------ccccccccCCceEe--CCceEEecCCCeEEE
Confidence            455 9999999999999987 32222221110 0000            0001 111245555  578999998888999


Q ss_pred             EeCCCCeE
Q 015463          157 VGPEGGLA  164 (406)
Q Consensus       157 ~d~~~~~~  164 (406)
                      +|.++|+.
T Consensus       132 lda~tG~~  139 (582)
T d1flga_         132 LNKNTGKV  139 (582)
T ss_dssp             EESSSCCE
T ss_pred             ecccccce
Confidence            99998864

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.13  E-value=8.8  Score=31.51  Aligned_cols=67  Identities=12%  Similarity=0.087  Sum_probs=41.4

Q ss_pred             EcCCCCeeEEEecCCEEEEEeCCceeEEEeecCCCccccCCCCCcccccccCCcCCcceEEEEeCCCCcEEEEeCCCcEE
Q 015463           76 FDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLM  155 (406)
Q Consensus        76 ~d~~g~~ly~g~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~d~~~g~L~Vad~~~gl~  155 (406)
                      ++.+|+.|.+|+.||.|..|+....+.+....                    ...+....+.+.+  +.|+.+...+.+.
T Consensus        23 ~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~--------------------~h~~~V~~v~~~~--~~l~s~s~D~~~~   80 (342)
T d2ovrb2          23 LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV--------------------GHTGGVWSSQMRD--NIIISGSTDRTLK   80 (342)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTTCCEEEECC--------------------CCSSCEEEEEEET--TEEEEEETTSCEE
T ss_pred             EEECCCEEEEEeCCCeEEEEECCCCCEEEEEe--------------------CCCCCEEEEEeCC--Cccccceeccccc
Confidence            45568889999999999999976222221111                    0124466788875  4566665555566


Q ss_pred             EEeCCCCeE
Q 015463          156 KVGPEGGLA  164 (406)
Q Consensus       156 ~~d~~~~~~  164 (406)
                      .++......
T Consensus        81 ~~~~~~~~~   89 (342)
T d2ovrb2          81 VWNAETGEC   89 (342)
T ss_dssp             EEETTTTEE
T ss_pred             ccccccccc
Confidence            666665543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.31  E-value=9  Score=30.95  Aligned_cols=74  Identities=15%  Similarity=0.162  Sum_probs=42.2

Q ss_pred             CeEEEEeCCCCeEEEecccCCCcceEEEecCCCEEEEEeCCCC--eEEEEEeeCCCCcceeeeecCCCCCCceEECCCCC
Q 015463          230 GRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVG--RLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE  307 (406)
Q Consensus       230 g~l~~~d~~t~~~~~~~~~~~~~ngi~l~~d~~~l~v~~t~~~--~i~~~~~~g~~~~~~~~~~~l~g~pd~i~~d~~G~  307 (406)
                      -.++.++.+++....+...........+++|++.+++.....+  .++.++..   .+..+... ..+.-.....++||+
T Consensus       151 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~-~~~~~~~p~~SPDG~  226 (269)
T d2hqsa1         151 PQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA---TGGVQVLS-STFLDETPSLAPNGT  226 (269)
T ss_dssp             CEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETT---TCCEEECC-CSSSCEEEEECTTSS
T ss_pred             ceEeeeecccccceeeecccccccccccccccceeEEEeecCCceeeeEeecc---cccceEee-cCccccceEECCCCC
Confidence            3588888887766655544333445678999998877655433  34444432   22222221 222223456788988