Citrus Sinensis ID: 015473

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400------
Protein Sequence
MKNGMIECSVCHSKLVSPTTKSISRAYDRHKTRVSSKQRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDEQQNGTHELRDVQENHRSKESFIDIAAGANEEVQICQWVFTFSVKRFSLL
Secondary Structure (PSIPRED)
cccccEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHEEccccccccccccccccccccccHHHcccccccccccccccccccccccEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEcccccccccccccHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHccccccccccHHcHcccccccHEHEEEEEEEEEEEEccc
Coil and Loop (DISEMBL)
mkngmiecsvchsklvspttksISRAYdrhktrvsskQRVLNVFLVVGDCMLVGLQPILVYMSkvdgrfkfspisVNFLTEMTKVLFAIVMLFFQARHqkvgekplLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVnqlrslpegstamglpvaMGAYIYTLIFITVPSMASVFNeyalksqydtsIYLQNLFLYGYGAIFNFLGILVTAIfkgpdnldilqgHSKATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKakdeqqngthelrdvqenhrskeSFIDIAAGANEEVQICQWVFTFSVKRFSLL
Flexible Loop (DISEMBL)
mkngmiecsvchsklvspttksisraydrhktrvsskqrvLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDEQQNGTHelrdvqenhrSKESFIDIAAGANEEVQICQWVFTFSVKRFSLL
Low Complexity Region (SEG)
MKNGMIECSVCHSKLVSPTTKSISRAYDRHKTRVSSKQRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNlkvlviavllkiiMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDEQQNGTHELRDVQENHRSKESFIDIAAGANEEVQICQWVFTFSVKRFSLL
Disordered region (IsUnstruct)
*******CSVCHS***********************KQRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFS****************************FIDIAAGANEEVQICQWVFTFSVKRF***
Disordered Region (DISOPRED)
**************************************RVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQL***********LPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQF**********************************************WVFTFSVKRFSLL
Disordered Region (DISEMBL)
MKNGMIECSVCHSKLVSPTTKSISRA*********SKQRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSL*************LRDVQENHRSKESFIDIAAGANEEVQICQWVFTFSVKRFSLL
Disordered Region (DISPRO)
****MIECSVCHSKLV***************TRVSSKQRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPE*****GLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLS*************************FID*A*GANEEVQICQWVFTFSVKRFSLL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKNGMIECSVCHSKLVSPTTKSISRAYDRHKTRVSSKQRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSxxxxxxxxxxxxxxxxxxxxxHRSKESFIDIAAGANEEVQICQWVFTFSVKRFSLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	406	2.2.26 [Sep-21-2011]
Q9C5H6	405	CMP-sialic acid transport	yes	no	0.955	0.958	0.832	0.0
Q8GY97	406	CMP-sialic acid transport	no	no	0.955	0.955	0.828	0.0
Q8LGE9	340	CMP-sialic acid transport	no	no	0.733	0.876	0.299	5e-34
F4JN00	352	CMP-sialic acid transport	no	no	0.701	0.809	0.301	6e-31
A4IHW3	321	Probable UDP-sugar transp	yes	no	0.748	0.947	0.274	6e-24
Q6DCG9	413	Probable UDP-sugar transp	N/A	no	0.798	0.784	0.249	4e-21
A0JMG9	314	Probable UDP-sugar transp	no	no	0.692	0.894	0.265	5e-19
Q90X48	440	Probable UDP-sugar transp	yes	no	0.788	0.727	0.247	6e-19
Q9BS91	424	Probable UDP-sugar transp	yes	no	0.773	0.740	0.250	1e-18
Q5R4D7	424	Probable UDP-sugar transp	yes	no	0.778	0.745	0.249	3e-18

>sp|Q9C5H6|CSTR3_ARATH CMP-sialic acid transporter 3 OS=Arabidopsis thaliana GN=UTR6 PE=2 SV=1

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/389 (83%), Positives = 355/389 (91%), Gaps = 1/389 (0%)

Query: 1   MKNGMIECSVCHSKLVSPTTKSISRAYDRHKTRVSSKQRVLNVFLVVGDCMLVGLQPILV 60
           MKNG+ EC  CHSKLVSP +K+ISRAYD HK RVSSKQRVLNV LVVGDCMLVGLQP+LV
Sbjct: 1   MKNGIAECPACHSKLVSPGSKTISRAYDDHKIRVSSKQRVLNVLLVVGDCMLVGLQPVLV 60

Query: 61  YMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNV 120
           YMSKVDG+F FSPISVNFLTE+ KV+FAIVML  QARHQKVGEKPLLS+STF+QAARNNV
Sbjct: 61  YMSKVDGKFNFSPISVNFLTEIAKVIFAIVMLLIQARHQKVGEKPLLSVSTFVQAARNNV 120

Query: 121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALA 180
           LLAVPA LYAINNYLKF MQLYFNPATVKMLSNLKVLVIAVLLK++M+RRFSIIQWEALA
Sbjct: 121 LLAVPALLYAINNYLKFTMQLYFNPATVKMLSNLKVLVIAVLLKMVMKRRFSIIQWEALA 180

Query: 181 LLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIY 240
           LLLIGISVNQLRSLPEG+TA+G+P+A GAY+ T+IF+TVPSMASVFNEYALKSQYDTSIY
Sbjct: 181 LLLIGISVNQLRSLPEGATAIGIPLATGAYVCTVIFVTVPSMASVFNEYALKSQYDTSIY 240

Query: 241 LQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKY 300
           LQNLFLYGYGAIFNFLGIL T I+KGP + DILQGHS+ATM LI NNAAQGILS FF KY
Sbjct: 241 LQNLFLYGYGAIFNFLGILGTVIYKGPGSFDILQGHSRATMFLILNNAAQGILSSFFFKY 300

Query: 301 ADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDE-QQ 359
           AD ILKKYSSTVATIFTGIASA LFGH +TMNFLLGISIVFISMHQFFS L+KA+DE QQ
Sbjct: 301 ADTILKKYSSTVATIFTGIASAALFGHVITMNFLLGISIVFISMHQFFSPLAKARDEQQQ 360

Query: 360 NGTHELRDVQENHRSKESFIDIAAGANEE 388
           NG  EL + ++ HR+ ESFI++AAGANEE
Sbjct: 361 NGNLELGNTKDTHRANESFINMAAGANEE 389

Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8GY97|CSTR2_ARATH CMP-sialic acid transporter 2 OS=Arabidopsis thaliana GN=At2g43240 PE=2 SV=1

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/390 (82%), Positives = 355/390 (91%), Gaps = 2/390 (0%)

Query: 1   MKNGMIECSVCHSKLVSPTTKSISRAYDRH--KTRVSSKQRVLNVFLVVGDCMLVGLQPI 58
           MKNGM ECSVC S+LVSP++K+ISRAYD +  K RVSSKQR LNVFLVVGDCMLVGLQP+
Sbjct: 1   MKNGMAECSVCRSRLVSPSSKAISRAYDNYNYKIRVSSKQRALNVFLVVGDCMLVGLQPV 60

Query: 59  LVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARN 118
           LVYMSKVDG+F FSPISVNFLTE+ KV+FA+VML FQARHQKVGEKPLLS+STF+QAARN
Sbjct: 61  LVYMSKVDGKFNFSPISVNFLTEIAKVIFAMVMLLFQARHQKVGEKPLLSLSTFVQAARN 120

Query: 119 NVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEA 178
           N+LLAVPA LYAINNYLKF MQLYFNPATVKMLSNLKVLVIAVLLK+IM+RRFSIIQWEA
Sbjct: 121 NMLLAVPAGLYAINNYLKFTMQLYFNPATVKMLSNLKVLVIAVLLKMIMKRRFSIIQWEA 180

Query: 179 LALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTS 238
           LALLLIGIS+NQLRSLPEG+T + +P+A GAYI T IF+TVPS+ASV+NEYALKSQYDTS
Sbjct: 181 LALLLIGISINQLRSLPEGATTVAVPIATGAYICTFIFVTVPSLASVYNEYALKSQYDTS 240

Query: 239 IYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFL 298
           IYLQNLFLYGYGAIFNFLGIL T I+KGP + DILQGHS+ATM LI NNAAQGILS FF 
Sbjct: 241 IYLQNLFLYGYGAIFNFLGILGTVIYKGPGSFDILQGHSRATMFLILNNAAQGILSSFFF 300

Query: 299 KYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDEQ 358
           KYAD ILKKYSSTVATIFTGIASA LFGH LTMNFLLGISIVFISMHQFFS LSKAKDEQ
Sbjct: 301 KYADTILKKYSSTVATIFTGIASAALFGHILTMNFLLGISIVFISMHQFFSPLSKAKDEQ 360

Query: 359 QNGTHELRDVQENHRSKESFIDIAAGANEE 388
           QNG  EL D ++ HR+K+SFI++AAGA EE
Sbjct: 361 QNGNIELVDAKDGHRAKDSFINMAAGATEE 390

Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LGE9|CSTR1_ARATH CMP-sialic acid transporter 1 OS=Arabidopsis thaliana GN=At5g41760 PE=2 SV=1

 Score =  145 bits (366), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 93/311 (29%), Positives = 171/311 (54%), Gaps = 13/311 (4%)

Query: 44  FLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGE 103
           F+ V   +L   Q IL  +S+ DG +K+   +V FL E+ K++ + + L+   R  +   
Sbjct: 8   FVAVLLTILTSSQGILTTLSQSDGGYKYDYATVPFLAEVFKLIISGLFLW---REMRTSS 64

Query: 104 KPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLL 163
                I+T  ++ R   L  +P+ +Y I+N ++F    Y + +T +++ NLK++   +L 
Sbjct: 65  STTSRITTDWKSVR---LFVIPSLIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILF 121

Query: 164 KIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMA 223
           ++ ++R+ S +QW A+ LL +G + +Q++   E S        +  Y+  ++   + ++A
Sbjct: 122 RLFLKRKLSKLQWMAIGLLAVGTTTSQVKGCGEASCDSLFTAPIQGYLLGILSAGLSALA 181

Query: 224 SVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIF-----KGPDNLDILQGHSK 278
            ++ E+ +K   DT +Y QNL LY +G++FN +  L+   F     KGP    I  G+S 
Sbjct: 182 GIYTEFLMKRNNDT-LYWQNLQLYTFGSLFN-VARLIADDFRHGFEKGPWWQRIFDGYSI 239

Query: 279 ATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGIS 338
            T L++ N  + G+L  + +KYAD I+K YS+++A + T +AS  LF    T+   LGI 
Sbjct: 240 TTWLVVLNLGSTGLLVSWLMKYADNIVKVYSTSMAMLLTMVASIYLFSFKPTLQLFLGIV 299

Query: 339 IVFISMHQFFS 349
           I  +S+H +F+
Sbjct: 300 ICIMSLHMYFA 310

Essential protein. Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi.

Arabidopsis thaliana (taxid: 3702)

>sp|F4JN00|CSTR4_ARATH CMP-sialic acid transporter 4 OS=Arabidopsis thaliana GN=At4g35335 PE=2 SV=1

 Score =  135 bits (340), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 152/295 (51%), Gaps = 10/295 (3%)

Query: 51  MLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSIS 110
           +L   Q IL+  SK  G++++S  + NFL    K   +++ L    +++ V +   LS +
Sbjct: 60  ILTSSQAILIVWSKRAGKYEYSVTTANFLVGTLKCALSLLALTRIWKNEGVTDDNRLS-T 118

Query: 111 TFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRR 170
           TF +      +  +PA LY   N L++ +  Y +    ++L NL ++   VL +II++R+
Sbjct: 119 TFDEVK----VFPIPAALYLFKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKRK 174

Query: 171 FSIIQWEALALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYA 230
            S IQW    LL  G +  QL S  +      LP     +   ++   +   A V+ E  
Sbjct: 175 LSEIQWAGFILLCCGCTTAQLNSNSDRVLQTSLP----GWTMAIVMALLSGFAGVYTEAI 230

Query: 231 LKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQ 290
           +K +   +I +QN +LY +G  FN + I++   F    N     G+S  T+L+I N+A  
Sbjct: 231 IKKRPSRNINVQNFWLYVFGMAFNAVAIVIQD-FDAVANKGFFHGYSFITLLMILNHALS 289

Query: 291 GILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMH 345
           GI     +KYAD I+K YS++VA + T + S  LF   L++ F LG ++V +S++
Sbjct: 290 GIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFNFHLSLAFFLGSTVVSVSVY 344

Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi (By similarity). Essential protein.

Arabidopsis thaliana (taxid: 3702)

>sp|A4IHW3|S35A4_XENTR Probable UDP-sugar transporter protein SLC35A4 OS=Xenopus tropicalis GN=slc35a4 PE=2 SV=1

 Score =  112 bits (279), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 165/324 (50%), Gaps = 20/324 (6%)

Query: 28  DRHKTRVSSKQRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLF 87
           +   +R   KQ +  + LV+    + G    L+Y+ KV+G   FS  +V  L E++K  F
Sbjct: 12  NHSPSRKRLKQILWGLMLVL-SVTIYGSHAPLIYLCKVNGEIPFSSSAVVLLIELSK--F 68

Query: 88  AIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPAT 147
            I ++FF  +  K  +    S+S  + A       AVPA LY  NN L   +Q + +P++
Sbjct: 69  VISLVFFLIQDWKSLKA---SVSWHLAAPY-----AVPAVLYGANNNLVVYIQHFMDPSS 120

Query: 148 VKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLL---IGISVNQLRSLPEGSTAMGLP 204
            ++LSNLK++  AVL  + +R+R S+ +W ++ LLL   +  S   ++ L + S+   L 
Sbjct: 121 FQVLSNLKIVSTAVLYSLFLRQRLSVRRWLSVFLLLAAGVFYSYGGIQDLEKVSSDTNLY 180

Query: 205 VAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIF 264
           V +   +  L +  +  +++V+ E  LK+Q    + +QNL+LY +G I N     +TA  
Sbjct: 181 VTLPGLLLMLAYCLISGLSAVYTEMTLKTQ-KIPLNMQNLYLYSFGIIIN-----LTAHL 234

Query: 265 KGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVL 324
               N D   G S    ++I + A  G++    +K ++ I + +  + + +  G  S +L
Sbjct: 235 TSSKNSDFFDGFSVWVWVIILSQALNGLIMSLVMKLSNNITRLFIISFSMLANGFLSFIL 294

Query: 325 FGHTLTMNFLLGISIVFISMHQFF 348
           F   LT  F L + ++ ++++ ++
Sbjct: 295 FQLQLTALFFLAVVLIGLAVYMYY 318

Xenopus tropicalis (taxid: 8364)

>sp|Q6DCG9|S35A5_XENLA Probable UDP-sugar transporter protein SLC35A5 OS=Xenopus laevis GN=slc35a5 PE=2 SV=1

 Score =  102 bits (255), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 165/377 (43%), Gaps = 53/377 (14%)

Query: 66  DGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVP 125
           D ++ + P +VN   E  K+LF + M       ++   +   S+  F Q  +     AVP
Sbjct: 44  DNKYDYVPATVNVCAEAVKLLFCMAMSVRIIMTERRSFRCHASLKHFCQYMK----WAVP 99

Query: 126 AFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIG 185
           AFLY ++N + F +  Y  PA   +LSN  ++  AV  ++I++R+ S +QW +L +L + 
Sbjct: 100 AFLYFLDNLIIFYVLAYLQPAMAVLLSNFVIITTAVFFRLILKRQLSCVQWASLVILFLS 159

Query: 186 I----SVNQ--------------LRSLPEGS-TAMGLP-------------------VAM 207
           I    S N                 S P  S T +  P                   + +
Sbjct: 160 IMGLTSRNDTAHHEVSVDVHHHLFHSAPSNSCTYLNKPDTEAHTVSLKAIANFQFLHLGL 219

Query: 208 GAYIYTLIFITVPSMASVFNEYALK--SQYDTSIYLQNLFLYGYGAIFNFLG-ILVTAIF 264
           G ++  L+   + ++A+++NE  LK   Q   SI++QN  LY +G  FN L  +L    F
Sbjct: 220 GHFL-ILLQCVISALANIYNEKILKEGEQMSESIFIQNSKLYVFGVFFNGLTLVLHDEYF 278

Query: 265 KGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVL 324
               +     GH+  ++ LIF  A  G+   F LK+ D +    ++ + T+   I S  +
Sbjct: 279 SKIKSCGFFYGHNGFSVALIFTTAFVGLSVAFILKFRDNMFHVLTAQITTVIITIVSYFV 338

Query: 325 FGHTLTMNFLLGISIVFISMHQFFSSLSKAKDEQQNGTHE-LR----DVQENHRSKESFI 379
           F    +++F L   +V +S+  F  + S+  +       E L+    DV E        +
Sbjct: 339 FSFKPSLDFFLEAPVVLLSI--FIYNASRITESSGTTKREKLKIINGDVWERSNGDGQEL 396

Query: 380 DIAAGANEEVQICQWVF 396
           +    ANE+ +  + +F
Sbjct: 397 EKLTAANEDSETDEEIF 413

Xenopus laevis (taxid: 8355)

>sp|A0JMG9|S35A4_DANRE Probable UDP-sugar transporter protein SLC35A4 OS=Danio rerio GN=slc35a4 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 136/297 (45%), Gaps = 16/297 (5%)

Query: 54  GLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFI 113
           G    L+ + K   +  FS  S   L E +K+  +   L         G    L IS  +
Sbjct: 33  GSHAPLLSLCKTQAQIPFSASSCVLLIETSKLFISFASLL------ASGSVSTLRISISM 86

Query: 114 QAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSI 173
             A      AVPA LYA NN+L   MQ Y +P++ ++LSNLK+   A+L    + +R   
Sbjct: 87  TTASP---YAVPAVLYAFNNHLVVFMQAYMDPSSFQVLSNLKIASTALLYTSCLGKRLHR 143

Query: 174 IQWEALALLL-IGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALK 232
            QW A+ LL+  G+S +      EG     + +     +  L++  V  +A+V+ E  LK
Sbjct: 144 RQWFAMGLLVSAGVSHSCFSYDLEGKRETAVYITSWGLLLVLVYCFVSGLAAVYTERVLK 203

Query: 233 SQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGI 292
           SQ    + +QNLFLY +G + N    L      G +     +G+S    +++    A G+
Sbjct: 204 SQ-RLPLSMQNLFLYTFGVVVNLASHL-----SGGEQKGFFEGYSAVVWVIVAGQVANGL 257

Query: 293 LSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFS 349
           L    +K+   I + +  + A +   + S  + G  LT  FL  + ++  +++ +++
Sbjct: 258 LMSVVMKHGTGITRLFVISSAMLVNAVLSWGILGVQLTGYFLFPVVLIGWAVYLYYT 314

Danio rerio (taxid: 7955)

>sp|Q90X48|S35A5_DANRE Probable UDP-sugar transporter protein SLC35A5 OS=Danio rerio GN=slc35a5 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 95/384 (24%), Positives = 172/384 (44%), Gaps = 64/384 (16%)

Query: 29  RHKTRVSSKQRVLNVFLVVGDCMLVGLQPILV--YMSKVDGRFKFSPISVNFLTEMTKVL 86
           R  +R+ S+     + L +G   L G   IL+  +    + ++ + P SVN + E  K++
Sbjct: 24  RPCSRICSRSSAYTLALGLGFVTL-GTSRILLLKFSGNEENKYDYLPASVNLMAEAIKLV 82

Query: 87  FAIVM----LFFQARH-QKVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQL 141
           F +VM    +  + R  + +G     S  ++++        +VPAFLY ++N + F +  
Sbjct: 83  FCLVMSVRVIIREGRSFKDLGCSSGASFLSYLK-------WSVPAFLYFLDNLIIFYVIA 135

Query: 142 YFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGI-------------SV 188
           Y  PA   + SN+ +   A L +++++RR S +QW +L +L + I             +V
Sbjct: 136 YLQPAMAVLFSNIVIFTTAFLFRVVLKRRLSWVQWASLIILFLSIVSLTTGNGDQHAMAV 195

Query: 189 NQL-------------------------------RSLPEGSTAMGLPVAMGAYIYTLIFI 217
           + L                               R L +      L      Y+  L+  
Sbjct: 196 HGLHPAHISTPSNSCLKYTHLHQVHQSHNESYWSRELWDSQLIHKLNSFGLGYVLLLLQC 255

Query: 218 TVPSMASVFNEYALK--SQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPD-NLDILQ 274
            + ++A+++NE  LK   Q   SI++QN  LY +G +FN L +L+ A ++    +  IL 
Sbjct: 256 FISALANIYNEKILKEGEQLVESIFIQNSKLYLFGLVFNSLTLLLHADYRNLTLHCGILY 315

Query: 275 GHSKATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFL 334
           GH+  ++ L F  AA G+   F LK+ D +    +  + T+     S  LF    +M+F 
Sbjct: 316 GHNVFSVALGFVTAALGLSVAFILKFRDNMFHVLTGQITTVVVTALSFFLFDFQPSMDFF 375

Query: 335 LGISIVFISMHQFFSSLSKAKDEQ 358
           +   +V +S+  + S  SK KD +
Sbjct: 376 MQAPVVLLSIFIYHS--SKMKDPE 397

Danio rerio (taxid: 7955)

>sp|Q9BS91|S35A5_HUMAN Probable UDP-sugar transporter protein SLC35A5 OS=Homo sapiens GN=SLC35A5 PE=1 SV=2

 Score = 94.7 bits (234), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 97/387 (25%), Positives = 169/387 (43%), Gaps = 73/387 (18%)

Query: 61  YMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLF--FQARHQKVGEK--PLLSISTFIQAA 116
           Y +  + ++ + P +VN  +E+ K++F +++ F   +  HQ    K       S F++  
Sbjct: 39  YSANEENKYDYLPTTVNVCSELVKLVFCVLVSFCVIKKDHQSRNLKYASWKEFSDFMK-- 96

Query: 117 RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQW 176
                 ++PAFLY ++N + F +  Y  PA   + SN  ++  A+L +I+++RR + IQW
Sbjct: 97  -----WSIPAFLYFLDNLIVFYVLSYLQPAMAVIFSNFSIITTALLFRIVLKRRLNWIQW 151

Query: 177 EALALLLIGI-----------------------------SVNQLRS-------------- 193
            +L  L + I                             S    RS              
Sbjct: 152 ASLLTLFLSIVALTAGTKTLQHNLAGRGFHHDAFFSPSNSCLLFRSECPRKDNCTAKEWT 211

Query: 194 LPEG---STAM---GLPVAMGAYIYTLIFITVPSMASVFNEYALK--SQYDTSIYLQNLF 245
            PE    +TA     + + MG ++  ++   + SMA+++NE  LK  +Q   SI++QN  
Sbjct: 212 FPEAKWNTTARVFSHIRLGMG-HVLIIVQCFISSMANIYNEKILKEGNQLTESIFIQNSK 270

Query: 246 LYGYGAIFNFLGI-LVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKYADAI 304
           LY +G +FN L + L  +      N     GHS  ++ LIF  A QG+   F LK+ D +
Sbjct: 271 LYFFGILFNGLTLGLQRSNRDQIKNCGFFYGHSAFSVALIFVTAFQGLSVAFILKFLDNM 330

Query: 305 LKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDEQQNGTHE 364
                + V T+     S ++F    ++ F L    V +S+  F  + SK +  +     E
Sbjct: 331 FHVLMAQVTTVIITTVSVLVFDFRPSLEFFLEAPSVLLSI--FIYNASKPQVPEYAPRQE 388

Query: 365 -LRDVQENHRSKESFIDIAAGANEEVQ 390
            +RD+  N   + S      G  EE++
Sbjct: 389 RIRDLSGNLWERSS------GDGEELE 409

Homo sapiens (taxid: 9606)

>sp|Q5R4D7|S35A5_PONAB Probable UDP-sugar transporter protein SLC35A5 OS=Pongo abelii GN=SLC35A5 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 169/385 (43%), Gaps = 69/385 (17%)

Query: 61  YMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLF--FQARHQKVGEKPLLSISTFIQAARN 118
           Y +  + ++ + P + N  +E+ K++F +++ F   +  HQ    K   S   F     N
Sbjct: 39  YSANEENKYDYLPTTANVCSELVKLVFCVLVSFCVIKKDHQSRNLK-YASWKEF----SN 93

Query: 119 NVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEA 178
            +  ++PAFLY ++N + F +  Y  PA   + SN  ++  A+L +I+++RR + IQW +
Sbjct: 94  FMKWSIPAFLYFLDNLIVFYVLSYLQPAMAVIFSNFSIITTALLFRIVLKRRLNWIQWAS 153

Query: 179 LALLLIGI-----------------------------SVNQLRS--------------LP 195
           L +L + I                             S    RS               P
Sbjct: 154 LLILFLSIVALTAGTKTLQHNLAGHGFHHDAFFSPSNSCLLFRSECPRKDNCTAKEWTFP 213

Query: 196 EG---STAM---GLPVAMGAYIYTLIFITVPSMASVFNEYALK--SQYDTSIYLQNLFLY 247
           E    +TA     + + MG ++  ++   + SMA+++NE  LK  +Q   SI++QN  LY
Sbjct: 214 EAKWNTTARVFSHIRLGMG-HVLIIVQCFISSMANIYNEKILKEGNQLAESIFIQNSKLY 272

Query: 248 GYGAIFNFLGI-LVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKYADAILK 306
            +G +FN L + L  +      N     GH+  ++ LIF  A QG+   F LK+ D +  
Sbjct: 273 FFGILFNGLTLGLQRSNRDQIKNCGFFYGHNAFSVALIFVTAFQGLSVAFILKFLDNMFH 332

Query: 307 KYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDEQQNGTHE-L 365
              + V T+     S ++F    ++ F L    V +S+  F  + SK +  +     E +
Sbjct: 333 VLMAQVTTVIITTVSVLVFDFRPSLEFFLEAPSVLLSI--FIYNASKPQGPEYAPRQERI 390

Query: 366 RDVQENHRSKESFIDIAAGANEEVQ 390
           RD+  N   + S      G  EE++
Sbjct: 391 RDLSGNLWERSS------GDGEELE 409

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	406
255577789	898	conserved hypothetical protein [Ricinus	0.955	0.432	0.873	0.0
356536564	403	PREDICTED: probable UDP-sugar transporte	0.953	0.960	0.863	0.0
363808016	403	uncharacterized protein LOC100815055 [Gl	0.953	0.960	0.860	0.0
449446225	402	PREDICTED: CMP-sialic acid transporter 2	0.950	0.960	0.865	0.0
359478080	405	PREDICTED: probable UDP-sugar transporte	0.955	0.958	0.835	0.0
297820766	405	UDP-galactose transporter 6 [Arabidopsis	0.955	0.958	0.832	0.0
18411150	405	UDP-galactose transporter 6 [Arabidopsis	0.955	0.958	0.832	0.0
357445115	432	UDP-galactose transporter [Medicago trun	0.948	0.891	0.802	0.0
145360939	406	nucleotide-sugar transporter [Arabidopsi	0.955	0.955	0.828	0.0
255547474	400	UDP-galactose/UDP-N-acetylglucosamine tr	0.943	0.957	0.836	0.0

>gi|255577789|ref|XP_002529769.1| conserved hypothetical protein [Ricinus communis] gi|223530767|gb|EEF32635.1| conserved hypothetical protein [Ricinus communis]

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/388 (87%), Positives = 363/388 (93%)

Query: 1   MKNGMIECSVCHSKLVSPTTKSISRAYDRHKTRVSSKQRVLNVFLVVGDCMLVGLQPILV 60
           MKNGMIECSVCHSKLVSP+ K++SRAYDRHK+RVSSK R LNVFLVVGDC+LVGLQPILV
Sbjct: 1   MKNGMIECSVCHSKLVSPSAKTVSRAYDRHKSRVSSKLRALNVFLVVGDCILVGLQPILV 60

Query: 61  YMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNV 120
           YMSKVDG+F FSP+SVNFLTE  KVLFAIVML  QAR QKVGEKPLLSISTF+QAARNNV
Sbjct: 61  YMSKVDGKFNFSPVSVNFLTEAAKVLFAIVMLLLQARSQKVGEKPLLSISTFVQAARNNV 120

Query: 121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALA 180
           LLAVPAFLYAINNYLKF MQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSI+QWEALA
Sbjct: 121 LLAVPAFLYAINNYLKFTMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSILQWEALA 180

Query: 181 LLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIY 240
           LLLIGISVNQLRSLPEG+TA G+P+A  AY+YTL+F+TVPS+ASV+NEYALKSQY+TSIY
Sbjct: 181 LLLIGISVNQLRSLPEGATATGIPLATIAYVYTLVFVTVPSLASVYNEYALKSQYETSIY 240

Query: 241 LQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKY 300
           LQNLFLYGYGAIFNFLGIL T I KGP + DILQGHSKATMLLI NNAAQGILS FF KY
Sbjct: 241 LQNLFLYGYGAIFNFLGILATVIVKGPSSFDILQGHSKATMLLICNNAAQGILSSFFFKY 300

Query: 301 ADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDEQQN 360
           AD ILKKYSSTVATIFTGIASA LFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDEQQN
Sbjct: 301 ADTILKKYSSTVATIFTGIASAALFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDEQQN 360

Query: 361 GTHELRDVQENHRSKESFIDIAAGANEE 388
           GT EL DVQ++HRSK+SFI++AAGANEE
Sbjct: 361 GTVELMDVQDDHRSKDSFINMAAGANEE 388

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536564|ref|XP_003536807.1| PREDICTED: probable UDP-sugar transporter protein SLC35A4-like [Glycine max]

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/388 (86%), Positives = 361/388 (93%), Gaps = 1/388 (0%)

Query: 1   MKNGMIECSVCHSKLVSPTTKSISRAYDRHKTRVSSKQRVLNVFLVVGDCMLVGLQPILV 60
           MKNG++ECSVCHSKLVSP++K+ISRAYDRHK+R+SSKQR LNVFLVVGDC+LVG QPILV
Sbjct: 1   MKNGVMECSVCHSKLVSPSSKTISRAYDRHKSRISSKQRALNVFLVVGDCVLVGFQPILV 60

Query: 61  YMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNV 120
           YMSKVDG+F FSPISVNFLTE+TKV FAIVML  QARHQKVGEKPLLSISTF+QAARNNV
Sbjct: 61  YMSKVDGKFNFSPISVNFLTEITKVFFAIVMLLLQARHQKVGEKPLLSISTFMQAARNNV 120

Query: 121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALA 180
           LLAVPA LYAINNYLKFIMQLYFNPATVKMLSNLKVLVIA+LLK+IM+RRFSIIQWEALA
Sbjct: 121 LLAVPALLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIALLLKVIMKRRFSIIQWEALA 180

Query: 181 LLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIY 240
           LLLIGISVNQLRSLPEG+TA+GLPV MGAY YTLIF+TVPS+ASV+NEYALKSQYDTSIY
Sbjct: 181 LLLIGISVNQLRSLPEGTTALGLPVTMGAYAYTLIFVTVPSLASVYNEYALKSQYDTSIY 240

Query: 241 LQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKY 300
           LQNLFLYGYGAIFNFLGIL T + KGP + DILQGHSKATMLLI NNAAQGILS FF KY
Sbjct: 241 LQNLFLYGYGAIFNFLGILGTVVVKGPSSFDILQGHSKATMLLIANNAAQGILSSFFFKY 300

Query: 301 ADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDEQQN 360
           AD ILKKYSSTVATIFTGIASAVLFGHTLTMNF++GISIVFISMHQFFS LSK KDE QN
Sbjct: 301 ADTILKKYSSTVATIFTGIASAVLFGHTLTMNFVIGISIVFISMHQFFSPLSKVKDE-QN 359

Query: 361 GTHELRDVQENHRSKESFIDIAAGANEE 388
           G  EL DV +  RSKESFI++AAGANEE
Sbjct: 360 GVLELHDVHDKQRSKESFINMAAGANEE 387

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808016|ref|NP_001242719.1| uncharacterized protein LOC100815055 [Glycine max] gi|255636089|gb|ACU18389.1| unknown [Glycine max]

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/388 (86%), Positives = 360/388 (92%), Gaps = 1/388 (0%)

Query: 1   MKNGMIECSVCHSKLVSPTTKSISRAYDRHKTRVSSKQRVLNVFLVVGDCMLVGLQPILV 60
           MKNG++ECSVCHSKLVSP+ K+ISRAYDRHK+R+SSKQR LNVFLVVGDC+LVG Q ILV
Sbjct: 1   MKNGIMECSVCHSKLVSPSAKTISRAYDRHKSRISSKQRALNVFLVVGDCVLVGFQSILV 60

Query: 61  YMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNV 120
           YMSKVDG+F FSPISVNFLTE+TKV FAIVML  QARHQKVGEKPLLSISTF+QAARNNV
Sbjct: 61  YMSKVDGKFNFSPISVNFLTEITKVFFAIVMLLLQARHQKVGEKPLLSISTFVQAARNNV 120

Query: 121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALA 180
           LLAVPA LYAINNYLKFIMQLYFNPATVKMLSNLKVLVIA+LLK+IM+RRFSIIQWEALA
Sbjct: 121 LLAVPALLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIALLLKVIMKRRFSIIQWEALA 180

Query: 181 LLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIY 240
           LLLIGISVNQLRSLPEG+TA+GLPV MGAYIYTLIF+TVPS+ASV+NEYALKSQYDTSIY
Sbjct: 181 LLLIGISVNQLRSLPEGTTALGLPVTMGAYIYTLIFVTVPSLASVYNEYALKSQYDTSIY 240

Query: 241 LQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKY 300
           LQNLFLYGYGAIFNFLGIL T + KGP + DILQGHSKATMLLI NNAAQGILS FF KY
Sbjct: 241 LQNLFLYGYGAIFNFLGILGTVVVKGPSSFDILQGHSKATMLLIANNAAQGILSSFFFKY 300

Query: 301 ADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDEQQN 360
           AD ILKKYSSTVATIFTGIASAVLFGHTLT+NF++GISIVFISMHQFFS LSK KDE QN
Sbjct: 301 ADTILKKYSSTVATIFTGIASAVLFGHTLTLNFVIGISIVFISMHQFFSPLSKVKDE-QN 359

Query: 361 GTHELRDVQENHRSKESFIDIAAGANEE 388
           G  EL DV +  RSKESFI++AAGANEE
Sbjct: 360 GVLELHDVHDKQRSKESFINMAAGANEE 387

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446225|ref|XP_004140872.1| PREDICTED: CMP-sialic acid transporter 2-like [Cucumis sativus]

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/388 (86%), Positives = 355/388 (91%), Gaps = 2/388 (0%)

Query: 1   MKNGMIECSVCHSKLVSPTTKSISRAYDRHKTRVSSKQRVLNVFLVVGDCMLVGLQPILV 60
           MKNGMIECSVCHSKLVSPTTK ISRAYDRHK RVSSKQR LN  LVVGDC+LVGLQPILV
Sbjct: 1   MKNGMIECSVCHSKLVSPTTKGISRAYDRHKIRVSSKQRALNTLLVVGDCILVGLQPILV 60

Query: 61  YMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNV 120
           YMSKVDG+F FSPISVNFLTE+ KV+FAIVML  QARHQKVGEKPLLSISTF+QAARNNV
Sbjct: 61  YMSKVDGKFMFSPISVNFLTEIAKVIFAIVMLILQARHQKVGEKPLLSISTFMQAARNNV 120

Query: 121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALA 180
           LLAVPAFLYAINNYLKF MQLYFNPATVKMLSNLKVLVIAVLLK+IMRRRFSIIQWEALA
Sbjct: 121 LLAVPAFLYAINNYLKFTMQLYFNPATVKMLSNLKVLVIAVLLKVIMRRRFSIIQWEALA 180

Query: 181 LLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIY 240
           LLLIGISVNQLRSLPEG+  +GL V MGAY+YTLIF+TVPS+ASV+NEYALKSQYDTSIY
Sbjct: 181 LLLIGISVNQLRSLPEGAPNLGLTVTMGAYVYTLIFVTVPSLASVYNEYALKSQYDTSIY 240

Query: 241 LQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKY 300
           LQNLFLYGYGAIFNF+GIL T I KGP + DILQGHSKATMLLI NNAAQGILS FF KY
Sbjct: 241 LQNLFLYGYGAIFNFMGILGTVIMKGPSSFDILQGHSKATMLLIANNAAQGILSSFFFKY 300

Query: 301 ADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDEQQN 360
           AD ILKKYSSTVATIFTGIASA LFGHTLTMNF+LGISIVFISMHQFFS LSK KDE QN
Sbjct: 301 ADTILKKYSSTVATIFTGIASAALFGHTLTMNFVLGISIVFISMHQFFSPLSKVKDE-QN 359

Query: 361 GTHELRDVQENHRSKESFIDIAAGANEE 388
           G  E+ DV +N RSK SFI+IAAGAN+E
Sbjct: 360 GMTEMVDV-DNQRSKGSFINIAAGANDE 386

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478080|ref|XP_003632066.1| PREDICTED: probable UDP-sugar transporter protein SLC35A5-like [Vitis vinifera] gi|297745192|emb|CBI39184.3| unnamed protein product [Vitis vinifera]

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/389 (83%), Positives = 361/389 (92%), Gaps = 1/389 (0%)

Query: 1   MKNGMIECSVCHSKLVSPTTKSISRAYDRHKTRVSSKQRVLNVFLVVGDCMLVGLQPILV 60
           MKNGMIECSVCHS+LVSP+ K++SRAYDRH++++SSK R LNVFLVVGDC+LVG QPILV
Sbjct: 1   MKNGMIECSVCHSRLVSPSAKTVSRAYDRHRSKISSKHRALNVFLVVGDCILVGFQPILV 60

Query: 61  YMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNV 120
           +MSKVDG+F+FSPISVNFLTE+ KVLFAIVML  QAR QKVGEKPLLS+STF+QAARNNV
Sbjct: 61  FMSKVDGKFEFSPISVNFLTEIAKVLFAIVMLLLQARRQKVGEKPLLSVSTFVQAARNNV 120

Query: 121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALA 180
           LLAVPA LYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLK+IMRRRFS IQWEALA
Sbjct: 121 LLAVPALLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKMIMRRRFSTIQWEALA 180

Query: 181 LLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIY 240
           LLLIGISVNQ+RSLPEG+TA+GLPVA GAY+YTLIF+TVPS+ASV+NEYALKSQYDTSIY
Sbjct: 181 LLLIGISVNQMRSLPEGTTALGLPVATGAYLYTLIFVTVPSLASVYNEYALKSQYDTSIY 240

Query: 241 LQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKY 300
           LQNLFLYGYGAIFNFLGI+ TA+ KGP + DIL GHSKATMLLIFNNAAQGILS FF KY
Sbjct: 241 LQNLFLYGYGAIFNFLGIVGTAVVKGPSSFDILHGHSKATMLLIFNNAAQGILSSFFFKY 300

Query: 301 ADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDEQQN 360
           AD ILKKYSSTVATIFTGIASA +FGHTLT+NF+LGISIVFISMHQFFS LSK KDE+QN
Sbjct: 301 ADTILKKYSSTVATIFTGIASAAMFGHTLTINFILGISIVFISMHQFFSPLSKVKDEEQN 360

Query: 361 GTHELRDVQENHRSKE-SFIDIAAGANEE 388
           G  E+ D+Q +HR K+ SFI++AAGANEE
Sbjct: 361 GKLEVMDIQGDHRLKDSSFINMAAGANEE 389

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820766|ref|XP_002878266.1| UDP-galactose transporter 6 [Arabidopsis lyrata subsp. lyrata] gi|297324104|gb|EFH54525.1| UDP-galactose transporter 6 [Arabidopsis lyrata subsp. lyrata]

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/389 (83%), Positives = 356/389 (91%), Gaps = 1/389 (0%)

Query: 1   MKNGMIECSVCHSKLVSPTTKSISRAYDRHKTRVSSKQRVLNVFLVVGDCMLVGLQPILV 60
           MKNG+ ECSVCHSKLVSP +K+ISRAYD HK RVSSKQRVLNV LVVGDCMLVGLQP+LV
Sbjct: 1   MKNGIAECSVCHSKLVSPGSKTISRAYDDHKIRVSSKQRVLNVLLVVGDCMLVGLQPVLV 60

Query: 61  YMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNV 120
           YMSKVDG+F FSPISVNFLTE+ KV+FAIVML  QARHQKVGEKPLLS+STF+QAARNNV
Sbjct: 61  YMSKVDGKFNFSPISVNFLTEIAKVIFAIVMLLIQARHQKVGEKPLLSVSTFVQAARNNV 120

Query: 121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALA 180
           LLAVPA LYAINNYLKF MQLYFNPATVKMLSNLKVLVIAVLLK++M+RRFSIIQWEALA
Sbjct: 121 LLAVPALLYAINNYLKFTMQLYFNPATVKMLSNLKVLVIAVLLKMVMKRRFSIIQWEALA 180

Query: 181 LLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIY 240
           LLLIGISVNQLRSLPEG+TA+G+P+A GAY+ T+IF+TVPSMASVFNEYALKSQYDTSIY
Sbjct: 181 LLLIGISVNQLRSLPEGATAIGIPLATGAYVCTVIFVTVPSMASVFNEYALKSQYDTSIY 240

Query: 241 LQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKY 300
           LQNLFLYGYGAIFNFLGIL T I+KGP + DILQGHS+ATM LI NNAAQGILS FF KY
Sbjct: 241 LQNLFLYGYGAIFNFLGILGTVIYKGPGSFDILQGHSRATMFLILNNAAQGILSSFFFKY 300

Query: 301 ADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDE-QQ 359
           AD ILKKYSSTVATIFTGIASA LFGH +TMNFLLGISIVFISMHQFFS L+K +DE QQ
Sbjct: 301 ADTILKKYSSTVATIFTGIASAALFGHVITMNFLLGISIVFISMHQFFSPLAKVRDEQQQ 360

Query: 360 NGTHELRDVQENHRSKESFIDIAAGANEE 388
           NG  EL + ++ HR+ +SFI++AAGANEE
Sbjct: 361 NGNLELVNAKDTHRANDSFINMAAGANEE 389

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18411150|ref|NP_567083.1| UDP-galactose transporter 6 [Arabidopsis thaliana] gi|30694978|ref|NP_850721.1| UDP-galactose transporter 6 [Arabidopsis thaliana] gi|75168953|sp|Q9C5H6.1|CSTR3_ARATH RecName: Full=CMP-sialic acid transporter 3; Short=CMP-SA-Tr 3; Short=CMP-Sia-Tr 3; AltName: Full=UDP-galactose/UDP-glucose transporter 6; Short=AtUTr6 gi|13430658|gb|AAK25951.1|AF360241_1 putative transporter protein [Arabidopsis thaliana] gi|14532830|gb|AAK64097.1| putative transporter protein [Arabidopsis thaliana] gi|332646390|gb|AEE79911.1| UDP-galactose transporter 6 [Arabidopsis thaliana] gi|332646391|gb|AEE79912.1| UDP-galactose transporter 6 [Arabidopsis thaliana]

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/389 (83%), Positives = 355/389 (91%), Gaps = 1/389 (0%)

Query: 1   MKNGMIECSVCHSKLVSPTTKSISRAYDRHKTRVSSKQRVLNVFLVVGDCMLVGLQPILV 60
           MKNG+ EC  CHSKLVSP +K+ISRAYD HK RVSSKQRVLNV LVVGDCMLVGLQP+LV
Sbjct: 1   MKNGIAECPACHSKLVSPGSKTISRAYDDHKIRVSSKQRVLNVLLVVGDCMLVGLQPVLV 60

Query: 61  YMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNV 120
           YMSKVDG+F FSPISVNFLTE+ KV+FAIVML  QARHQKVGEKPLLS+STF+QAARNNV
Sbjct: 61  YMSKVDGKFNFSPISVNFLTEIAKVIFAIVMLLIQARHQKVGEKPLLSVSTFVQAARNNV 120

Query: 121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALA 180
           LLAVPA LYAINNYLKF MQLYFNPATVKMLSNLKVLVIAVLLK++M+RRFSIIQWEALA
Sbjct: 121 LLAVPALLYAINNYLKFTMQLYFNPATVKMLSNLKVLVIAVLLKMVMKRRFSIIQWEALA 180

Query: 181 LLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIY 240
           LLLIGISVNQLRSLPEG+TA+G+P+A GAY+ T+IF+TVPSMASVFNEYALKSQYDTSIY
Sbjct: 181 LLLIGISVNQLRSLPEGATAIGIPLATGAYVCTVIFVTVPSMASVFNEYALKSQYDTSIY 240

Query: 241 LQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKY 300
           LQNLFLYGYGAIFNFLGIL T I+KGP + DILQGHS+ATM LI NNAAQGILS FF KY
Sbjct: 241 LQNLFLYGYGAIFNFLGILGTVIYKGPGSFDILQGHSRATMFLILNNAAQGILSSFFFKY 300

Query: 301 ADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDE-QQ 359
           AD ILKKYSSTVATIFTGIASA LFGH +TMNFLLGISIVFISMHQFFS L+KA+DE QQ
Sbjct: 301 ADTILKKYSSTVATIFTGIASAALFGHVITMNFLLGISIVFISMHQFFSPLAKARDEQQQ 360

Query: 360 NGTHELRDVQENHRSKESFIDIAAGANEE 388
           NG  EL + ++ HR+ ESFI++AAGANEE
Sbjct: 361 NGNLELGNTKDTHRANESFINMAAGANEE 389

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445115|ref|XP_003592835.1| UDP-galactose transporter [Medicago truncatula] gi|355481883|gb|AES63086.1| UDP-galactose transporter [Medicago truncatula]

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/411 (80%), Positives = 360/411 (87%), Gaps = 26/411 (6%)

Query: 3   NGMIECSVCHSKLVSPT-TKSISRAYDRHKTRVSSKQRVLNVFLVVGDCMLVGLQPILVY 61
           NGMIECSVCHSKLVSP  TK++SRAYDRHK R++SKQRVLN+ LV GDCMLVG QPILVY
Sbjct: 7   NGMIECSVCHSKLVSPAATKTVSRAYDRHKNRITSKQRVLNILLVGGDCMLVGFQPILVY 66

Query: 62  MSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVL 121
           MSKVDG+F FSPISVNFLTE+TKV FAIVML  QAR+QKVG+KPLLSISTF+QAARNNVL
Sbjct: 67  MSKVDGKFNFSPISVNFLTEITKVFFAIVMLLLQARNQKVGDKPLLSISTFMQAARNNVL 126

Query: 122 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALAL 181
           LAVPAFLYAINNYLKF+MQLYFNPATVKMLSNLKVLVIA+LLK++M+RRFSIIQWEALAL
Sbjct: 127 LAVPAFLYAINNYLKFVMQLYFNPATVKMLSNLKVLVIALLLKVVMKRRFSIIQWEALAL 186

Query: 182 LLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSI-- 239
           LLIGISVNQLRSLPEG+TA+GLPV MGAY+YT IF+TVPSMASV+NEYALKSQYDTSI  
Sbjct: 187 LLIGISVNQLRSLPEGTTALGLPVTMGAYVYTFIFVTVPSMASVYNEYALKSQYDTSIYL 246

Query: 240 ----------------------YLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHS 277
                                 YLQNLFLYGYGA+FNFLGI+VTAIFKGP + DIL+GHS
Sbjct: 247 QVKYDTFNCFNIYIIDANSLFFYLQNLFLYGYGAMFNFLGIVVTAIFKGPSSFDILEGHS 306

Query: 278 KATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGI 337
           KATMLLI NNAAQGILS FF KYAD ILKKYSSTVATIFTGIASAVLFGH LTMNFL+GI
Sbjct: 307 KATMLLIANNAAQGILSSFFFKYADTILKKYSSTVATIFTGIASAVLFGHKLTMNFLIGI 366

Query: 338 SIVFISMHQFFSSLSKAKDEQQNGTHELRDVQENHRSKESFIDIAAGANEE 388
           SIVFISMHQFFS LSK +DE QNG  EL DVQE  RSK+SF+++AAGANEE
Sbjct: 367 SIVFISMHQFFSPLSKVRDE-QNGALELHDVQEKQRSKDSFLNMAAGANEE 416

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145360939|ref|NP_181853.3| nucleotide-sugar transporter [Arabidopsis thaliana] gi|75151390|sp|Q8GY97.1|CSTR2_ARATH RecName: Full=CMP-sialic acid transporter 2; Short=CMP-SA-Tr 2; Short=CMP-Sia-Tr 2 gi|26450627|dbj|BAC42425.1| unknown protein [Arabidopsis thaliana] gi|51971655|dbj|BAD44492.1| unnamed protein product [Arabidopsis thaliana] gi|330255141|gb|AEC10235.1| nucleotide-sugar transporter [Arabidopsis thaliana]

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/390 (82%), Positives = 355/390 (91%), Gaps = 2/390 (0%)

Query: 1   MKNGMIECSVCHSKLVSPTTKSISRAYDRH--KTRVSSKQRVLNVFLVVGDCMLVGLQPI 58
           MKNGM ECSVC S+LVSP++K+ISRAYD +  K RVSSKQR LNVFLVVGDCMLVGLQP+
Sbjct: 1   MKNGMAECSVCRSRLVSPSSKAISRAYDNYNYKIRVSSKQRALNVFLVVGDCMLVGLQPV 60

Query: 59  LVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARN 118
           LVYMSKVDG+F FSPISVNFLTE+ KV+FA+VML FQARHQKVGEKPLLS+STF+QAARN
Sbjct: 61  LVYMSKVDGKFNFSPISVNFLTEIAKVIFAMVMLLFQARHQKVGEKPLLSLSTFVQAARN 120

Query: 119 NVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEA 178
           N+LLAVPA LYAINNYLKF MQLYFNPATVKMLSNLKVLVIAVLLK+IM+RRFSIIQWEA
Sbjct: 121 NMLLAVPAGLYAINNYLKFTMQLYFNPATVKMLSNLKVLVIAVLLKMIMKRRFSIIQWEA 180

Query: 179 LALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTS 238
           LALLLIGIS+NQLRSLPEG+T + +P+A GAYI T IF+TVPS+ASV+NEYALKSQYDTS
Sbjct: 181 LALLLIGISINQLRSLPEGATTVAVPIATGAYICTFIFVTVPSLASVYNEYALKSQYDTS 240

Query: 239 IYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFL 298
           IYLQNLFLYGYGAIFNFLGIL T I+KGP + DILQGHS+ATM LI NNAAQGILS FF 
Sbjct: 241 IYLQNLFLYGYGAIFNFLGILGTVIYKGPGSFDILQGHSRATMFLILNNAAQGILSSFFF 300

Query: 299 KYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDEQ 358
           KYAD ILKKYSSTVATIFTGIASA LFGH LTMNFLLGISIVFISMHQFFS LSKAKDEQ
Sbjct: 301 KYADTILKKYSSTVATIFTGIASAALFGHILTMNFLLGISIVFISMHQFFSPLSKAKDEQ 360

Query: 359 QNGTHELRDVQENHRSKESFIDIAAGANEE 388
           QNG  EL D ++ HR+K+SFI++AAGA EE
Sbjct: 361 QNGNIELVDAKDGHRAKDSFINMAAGATEE 390

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547474|ref|XP_002514794.1| UDP-galactose/UDP-N-acetylglucosamine transporter, putative [Ricinus communis] gi|223545845|gb|EEF47348.1| UDP-galactose/UDP-N-acetylglucosamine transporter, putative [Ricinus communis]

 Score =  658 bits (1697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/385 (83%), Positives = 352/385 (91%), Gaps = 2/385 (0%)

Query: 5   MIECSVCHSKLVSPTTKSISRAYDRHKTRVSSKQRVLNVFLVVGDCMLVGLQPILVYMSK 64
           MIECSVCHSK +SPT+K++SRAYDRH++ VSSK R LN+ LVVGDC+LVGLQPILVYMSK
Sbjct: 1   MIECSVCHSK-ISPTSKTVSRAYDRHRSDVSSKTRALNILLVVGDCILVGLQPILVYMSK 59

Query: 65  VDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAV 124
           VDG+FKFSPISVNFLTE  KVLFAI+ML  QARH+K G+KP LS+STF+QAARNNVLLAV
Sbjct: 60  VDGQFKFSPISVNFLTEAAKVLFAILMLCIQARHKKTGDKPPLSVSTFVQAARNNVLLAV 119

Query: 125 PAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLI 184
           PAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIM+RRFSIIQWEALALLLI
Sbjct: 120 PAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMKRRFSIIQWEALALLLI 179

Query: 185 GISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNL 244
           GISVNQLRSLP G+TAMGLPVA GAY+YTLIF TVPS+ASV+NEYALKSQ+DTSIYLQNL
Sbjct: 180 GISVNQLRSLPGGTTAMGLPVATGAYLYTLIFATVPSLASVYNEYALKSQFDTSIYLQNL 239

Query: 245 FLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKYADAI 304
           FLYGYGAIFNFL ILVTAIFKGP +LDILQGHSKATMLLI NNAAQGILS FF KYAD I
Sbjct: 240 FLYGYGAIFNFLAILVTAIFKGPSSLDILQGHSKATMLLICNNAAQGILSSFFFKYADTI 299

Query: 305 LKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDEQQNGTHE 364
           LKKYSSTVATIFTGIASA LFGHTLTMNF+LGISIVFISMHQFFS LSK KDE  NG  +
Sbjct: 300 LKKYSSTVATIFTGIASAALFGHTLTMNFILGISIVFISMHQFFSPLSKVKDEPPNGGVQ 359

Query: 365 LRDVQENHRSKE-SFIDIAAGANEE 388
           + D + N RSK+ +FI++ AGANE+
Sbjct: 360 MMDGKNNQRSKDAAFINMTAGANED 384

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	406
TAIR|locus:2081292	405	UTR6 "UDP-galactose transporte	0.955	0.958	0.804	5e-163
TAIR|locus:2040976	406	AT2G43240 [Arabidopsis thalian	0.955	0.955	0.797	9.3e-162
TAIR|locus:2152955	340	AT5G41760 [Arabidopsis thalian	0.736	0.879	0.287	4.6e-34
TAIR|locus:504955503	352	AT4G35335 [Arabidopsis thalian	0.701	0.809	0.284	2.7e-29
UNIPROTKB|F1NDA7	299	SLC35A4 "Uncharacterized prote	0.706	0.959	0.270	5.2e-26
UNIPROTKB|Q96G79	324	SLC35A4 "Probable UDP-sugar tr	0.731	0.916	0.279	2.9e-23
UNIPROTKB|Q8MIA3	324	SLC35A4 "Probable UDP-sugar tr	0.682	0.854	0.297	3.3e-22
ZFIN|ZDB-GENE-061103-595	314	slc35a4 "solute carrier family	0.768	0.993	0.246	7.4e-22
UNIPROTKB|F1NTH1	432	SLC35A5 "Uncharacterized prote	0.371	0.349	0.256	1.6e-21
RGD|628792	324	Slc35a4 "solute carrier family	0.731	0.916	0.279	6.5e-21

TAIR|locus:2081292 UTR6 "UDP-galactose transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1587 (563.7 bits), Expect = 5.0e-163, P = 5.0e-163
 Identities = 313/389 (80%), Positives = 342/389 (87%)

Query:     1 MKNGMIECSVCHSKLVSPTTKSISRAYDRHKTRVSSKQRVLNVFLVVGDCMLVGLQPILV 60
             MKNG+ EC  CHSKLVSP +K+ISRAYD HK RVSSKQRVLNV LVVGDCMLVGLQP+LV
Sbjct:     1 MKNGIAECPACHSKLVSPGSKTISRAYDDHKIRVSSKQRVLNVLLVVGDCMLVGLQPVLV 60

Query:    61 YMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNV 120
             YMSKVDG+F FSPISVNFLTE+ KV+FAIVML  QARHQKVGEKPLLS+STF+QAARNNV
Sbjct:    61 YMSKVDGKFNFSPISVNFLTEIAKVIFAIVMLLIQARHQKVGEKPLLSVSTFVQAARNNV 120

Query:   121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNXXXXXXXXXXXXXMRRRFSIIQWEALA 180
             LLAVPA LYAINNYLKF MQLYFNPATVKMLSN             M+RRFSIIQWEALA
Sbjct:   121 LLAVPALLYAINNYLKFTMQLYFNPATVKMLSNLKVLVIAVLLKMVMKRRFSIIQWEALA 180

Query:   181 LLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIY 240
             LLLIGISVNQLRSLPEG+TA+G+P+A GAY+ T+IF+TVPSMASVFNEYALKSQYDTSIY
Sbjct:   181 LLLIGISVNQLRSLPEGATAIGIPLATGAYVCTVIFVTVPSMASVFNEYALKSQYDTSIY 240

Query:   241 LQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKY 300
             LQNLFLYGYGAIFNFLGIL T I+KGP + DILQGHS+ATM LI NNAAQGILS FF KY
Sbjct:   241 LQNLFLYGYGAIFNFLGILGTVIYKGPGSFDILQGHSRATMFLILNNAAQGILSSFFFKY 300

Query:   301 ADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDEQQ- 359
             AD ILKKYSSTVATIFTGIASA LFGH +TMNFLLGISIVFISMHQFFS L+KA+DEQQ 
Sbjct:   301 ADTILKKYSSTVATIFTGIASAALFGHVITMNFLLGISIVFISMHQFFSPLAKARDEQQQ 360

Query:   360 NGTHELRDVQENHRSKESFIDIAAGANEE 388
             NG  EL + ++ HR+ ESFI++AAGANEE
Sbjct:   361 NGNLELGNTKDTHRANESFINMAAGANEE 389

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015780 "nucleotide-sugar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2040976 AT2G43240 [Arabidopsis thaliana (taxid:3702)]

 Score = 1575 (559.5 bits), Expect = 9.3e-162, P = 9.3e-162
 Identities = 311/390 (79%), Positives = 342/390 (87%)

Query:     1 MKNGMIECSVCHSKLVSPTTKSISRAYDRH--KTRVSSKQRVLNVFLVVGDCMLVGLQPI 58
             MKNGM ECSVC S+LVSP++K+ISRAYD +  K RVSSKQR LNVFLVVGDCMLVGLQP+
Sbjct:     1 MKNGMAECSVCRSRLVSPSSKAISRAYDNYNYKIRVSSKQRALNVFLVVGDCMLVGLQPV 60

Query:    59 LVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARN 118
             LVYMSKVDG+F FSPISVNFLTE+ KV+FA+VML FQARHQKVGEKPLLS+STF+QAARN
Sbjct:    61 LVYMSKVDGKFNFSPISVNFLTEIAKVIFAMVMLLFQARHQKVGEKPLLSLSTFVQAARN 120

Query:   119 NVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNXXXXXXXXXXXXXMRRRFSIIQWEA 178
             N+LLAVPA LYAINNYLKF MQLYFNPATVKMLSN             M+RRFSIIQWEA
Sbjct:   121 NMLLAVPAGLYAINNYLKFTMQLYFNPATVKMLSNLKVLVIAVLLKMIMKRRFSIIQWEA 180

Query:   179 LALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTS 238
             LALLLIGIS+NQLRSLPEG+T + +P+A GAYI T IF+TVPS+ASV+NEYALKSQYDTS
Sbjct:   181 LALLLIGISINQLRSLPEGATTVAVPIATGAYICTFIFVTVPSLASVYNEYALKSQYDTS 240

Query:   239 IYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFL 298
             IYLQNLFLYGYGAIFNFLGIL T I+KGP + DILQGHS+ATM LI NNAAQGILS FF 
Sbjct:   241 IYLQNLFLYGYGAIFNFLGILGTVIYKGPGSFDILQGHSRATMFLILNNAAQGILSSFFF 300

Query:   299 KYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDEQ 358
             KYAD ILKKYSSTVATIFTGIASA LFGH LTMNFLLGISIVFISMHQFFS LSKAKDEQ
Sbjct:   301 KYADTILKKYSSTVATIFTGIASAALFGHILTMNFLLGISIVFISMHQFFSPLSKAKDEQ 360

Query:   359 QNGTHELRDVQENHRSKESFIDIAAGANEE 388
             QNG  EL D ++ HR+K+SFI++AAGA EE
Sbjct:   361 QNGNIELVDAKDGHRAKDSFINMAAGATEE 390

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=ISS

TAIR|locus:2152955 AT5G41760 [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 89/310 (28%), Positives = 162/310 (52%)

Query:    44 FLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGE 103
             F+ V   +L   Q IL  +S+ DG +K+   +V FL E+ K++ + + L+   R  +   
Sbjct:     8 FVAVLLTILTSSQGILTTLSQSDGGYKYDYATVPFLAEVFKLIISGLFLW---REMRTSS 64

Query:   104 KPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNXXXXXXXXXX 163
                  I+T  ++ R   L  +P+ +Y I+N ++F    Y + +T +++ N          
Sbjct:    65 STTSRITTDWKSVR---LFVIPSLIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILF 121

Query:   164 XXXMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMA 223
                ++R+ S +QW A+ LL +G + +Q++   E S        +  Y+  ++   + ++A
Sbjct:   122 RLFLKRKLSKLQWMAIGLLAVGTTTSQVKGCGEASCDSLFTAPIQGYLLGILSAGLSALA 181

Query:   224 SVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAI---F-KGPDNLDILQGHSKA 279
              ++ E+ +K   DT +Y QNL LY +G++FN   ++       F KGP    I  G+S  
Sbjct:   182 GIYTEFLMKRNNDT-LYWQNLQLYTFGSLFNVARLIADDFRHGFEKGPWWQRIFDGYSIT 240

Query:   280 TMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISI 339
             T L++ N  + G+L  + +KYAD I+K YS+++A + T +AS  LF    T+   LGI I
Sbjct:   241 TWLVVLNLGSTGLLVSWLMKYADNIVKVYSTSMAMLLTMVASIYLFSFKPTLQLFLGIVI 300

Query:   340 VFISMHQFFS 349
               +S+H +F+
Sbjct:   301 CIMSLHMYFA 310

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA;ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0005456 "CMP-N-acetylneuraminate transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015780 "nucleotide-sugar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=ISS;IDA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IDA

GO:0015739 "sialic acid transport" evidence=IDA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

TAIR|locus:504955503 AT4G35335 [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 84/295 (28%), Positives = 144/295 (48%)

Query:    51 MLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSIS 110
             +L   Q IL+  SK  G++++S  + NFL    K   +++ L    +++ V +   LS +
Sbjct:    60 ILTSSQAILIVWSKRAGKYEYSVTTANFLVGTLKCALSLLALTRIWKNEGVTDDNRLS-T 118

Query:   111 TFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNXXXXXXXXXXXXXMRRR 170
             TF +      +  +PA LY   N L++ +  Y +    ++L N             ++R+
Sbjct:   119 TFDEVK----VFPIPAALYLFKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKRK 174

Query:   171 FSIIQWEALALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYA 230
              S IQW    LL  G +  QL S  +      LP     +   ++   +   A V+ E  
Sbjct:   175 LSEIQWAGFILLCCGCTTAQLNSNSDRVLQTSLP----GWTMAIVMALLSGFAGVYTEAI 230

Query:   231 LKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQ 290
             +K +   +I +QN +LY +G  FN + I++   F    N     G+S  T+L+I N+A  
Sbjct:   231 IKKRPSRNINVQNFWLYVFGMAFNAVAIVIQD-FDAVANKGFFHGYSFITLLMILNHALS 289

Query:   291 GILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMH 345
             GI     +KYAD I+K YS++VA + T + S  LF   L++ F LG ++V +S++
Sbjct:   290 GIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFNFHLSLAFFLGSTVVSVSVY 344

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA;ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

UNIPROTKB|F1NDA7 SLC35A4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 84/310 (27%), Positives = 157/310 (50%)

Query:    45 LVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEK 104
             +++    + G    L+ + KVDG   FS  SV  L E+TK++ +++ L    R Q +G  
Sbjct:     4 MLLSSVAIYGSHAPLLTLCKVDGTIPFSSSSVVVLIELTKLVLSLLFLLTWDR-QLLGA- 61

Query:   105 PLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNXXXXXXXXXXX 164
                ++S    A       A+ A LYA NN L   MQL+ +P+T ++LSN           
Sbjct:    62 ---AVSWHHVAP-----FALSALLYAANNNLVVHMQLFMDPSTYQILSNLKIVSTALLYS 113

Query:   165 XXMRRRFSIIQWEALALLLI-GISVN--QLRSLPEGS---TAMGLPVAMGAYIYTLIFIT 218
               +R+R  + QW AL LL+  G+S +   LR  P GS   +AM L + +   +   ++  
Sbjct:   114 LFLRQRLRVRQWLALCLLMAAGVSYSCGGLRD-PRGSGSPSAMQLHITLVGLLLISVYCL 172

Query:   219 VPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSK 278
             +  +++V+ E  LK+Q    + LQN+FLY +G + N +G   ++  +G      L+G S 
Sbjct:   173 ISGLSAVYTEAILKTQA-LPLNLQNIFLYFFGVLVNLVGHFWSSTERG-----FLEGFSF 226

Query:   279 ATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGIS 338
               ++++ + A  G++    +K++  I + +  + + +   + S  LF   LT+ F + +S
Sbjct:   227 WVLVIVVSQALNGLIMSVVMKHSSNITRLFVISCSILVNALLSVALFNLQLTLLFFIAVS 286

Query:   339 IVFISMHQFF 348
              + +++H ++
Sbjct:   287 CIGLAVHLYY 296

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q96G79 SLC35A4 "Probable UDP-sugar transporter protein SLC35A4" [Homo sapiens (taxid:9606)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 91/326 (27%), Positives = 149/326 (45%)

Query:    37 KQRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQA 96
             +Q    + L++   M     P+L  +  VDGR  F P S   LTE+TK+L     L    
Sbjct:    15 RQARWTLMLLLSTAMYGAHAPLLA-LCHVDGRVPFRPSSAVLLTELTKLLLCAFSLLVGW 73

Query:    97 RHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNXXX 156
             +    G  P      + QAA      A+ A LY  NN L   +Q Y +P+T ++LSN   
Sbjct:    74 QAWPQGPPP------WRQAAP----FALSALLYGANNNLVIYLQRYMDPSTYQVLSNLKI 123

Query:   157 XXXXXXXXXXMRRRFSIIQWEALALLLI--------GISV--NQLRSLPEGSTAMGLPVA 206
                       +R R S+ Q  AL LL+         G+ V  N L S P  + A  +P+ 
Sbjct:   124 GSTAVLYCLCLRHRLSVRQGLALLLLMAAGACYAAGGLQVPGNTLPSPPPAAAASPMPLH 183

Query:   207 MG--AYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIF 264
             +     +  +++  +  ++SV+ E  +K Q    + LQNLFLY +G + N LG+      
Sbjct:   184 ITPLGLLLLILYCLISGLSSVYTELLMKRQR-LPLALQNLFLYTFGVLLN-LGLHAGG-G 240

Query:   265 KGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVL 324
              GP    +L+G S    L++ + A  G+L    +K+  +I + +  + + +   + SAVL
Sbjct:   241 SGPG---LLEGFSGWAALVVLSQALNGLLMSAVMKHGSSITRLFVVSCSLVVNAVLSAVL 297

Query:   325 FGHTLTMNFLLGISIVFISMHQFFSS 350
                 LT  F L   ++ ++M  ++ S
Sbjct:   298 LRLQLTAAFFLATLLIGLAMRLYYGS 323

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q8MIA3 SLC35A4 "Probable UDP-sugar transporter protein SLC35A4" [Sus scrofa (taxid:9823)]

 Score = 259 (96.2 bits), Expect = 3.3e-22, P = 3.3e-22
 Identities = 91/306 (29%), Positives = 141/306 (46%)

Query:    57 PILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAA 116
             P+L  +  VDGR  F P S   LTE+TK+L   + L    +       P      + QAA
Sbjct:    35 PLLA-LCHVDGRVPFRPSSAVLLTELTKLLLCALSLLVGWQAWPPRTPP------WRQAA 87

Query:   117 RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNXXXXXXXXXXXXXMRRRFSIIQW 176
                   A+ A LY  NN L   +Q Y +P+T ++LSN             +RRR S  Q 
Sbjct:    88 P----FALSALLYGANNNLVIHLQHYMDPSTYQVLSNLKIGSTALFYCLCLRRRLSARQG 143

Query:   177 EALALLLIG---ISVNQLRS----LPEG-STAMGLPVAMGA----YIYTLIFITVPSMAS 224
              AL LL+      +   LR     LPE  STA   PV +       +  L++  +  ++S
Sbjct:   144 LALLLLMAAGACYAAGGLRDPGSPLPESPSTAASGPVPLHVTAPGLLLLLLYCLISGLSS 203

Query:   225 VFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLI 284
             V+ E  LK Q    + LQNLFLY +G + N LG+       GP    +L+G S    L++
Sbjct:   204 VYTELLLKRQR-LPLALQNLFLYTFGVLLN-LGLHAGG---GPGP-GLLEGFSGWAALVV 257

Query:   285 FNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISM 344
              + A  G+L    +K+  +I + +  + + +   + SA L    LT  F L   ++ +++
Sbjct:   258 LSQALNGLLMSAVMKHGSSITRLFVVSCSLVVNAVLSAALLRLQLTAAFFLAALLIGLAV 317

Query:   345 HQFFSS 350
             H ++ S
Sbjct:   318 HLYYGS 323

GO:0016021 "integral to membrane" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

ZFIN|ZDB-GENE-061103-595 slc35a4 "solute carrier family 35, member A4" [Danio rerio (taxid:7955)]

 Score = 256 (95.2 bits), Expect = 7.4e-22, P = 7.4e-22
 Identities = 81/328 (24%), Positives = 144/328 (43%)

Query:    23 ISRAYDRHKTRVSSKQRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEM 82
             I+ + D      S   R+  +FL++   ++ G    L+ + K   +  FS  S   L E 
Sbjct:     2 IAISADESPESSSPALRLRWLFLLLLLVLIYGSHAPLLSLCKTQAQIPFSASSCVLLIET 61

Query:    83 TKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLY 142
             +K+  +   L         G    L IS  +  A      AVPA LYA NN+L   MQ Y
Sbjct:    62 SKLFISFASLLAS------GSVSTLRISISMTTASP---YAVPAVLYAFNNHLVVFMQAY 112

Query:   143 FNPATVKMLSNXXXXXXXXXXXXXMRRRFSIIQWEALALLL-IGISVNQLRSLPEGSTAM 201
              +P++ ++LSN             + +R    QW A+ LL+  G+S +      EG    
Sbjct:   113 MDPSSFQVLSNLKIASTALLYTSCLGKRLHRRQWFAMGLLVSAGVSHSCFSYDLEGKQET 172

Query:   202 GLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVT 261
              + +     +  L++  V  +A+V+ E  LKSQ    + +QNLFLY +G + N    L  
Sbjct:   173 AVYITSWGLLLVLVYCFVSGLAAVYTERVLKSQR-LPLSMQNLFLYAFGVVVNLASHL-- 229

Query:   262 AIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIAS 321
                 G +     +G+S    +++    A G+L    +K+   I + +  + A +   + S
Sbjct:   230 ---SGGEQKGFFEGYSAVVWVIVAGQVANGLLMSVVMKHGTGITRLFVISSAMLVNAVLS 286

Query:   322 AVLFGHTLTMNFLLGISIVFISMHQFFS 349
               + G  LT  FL  + ++  +++ +++
Sbjct:   287 WGILGVQLTGYFLFPVVLIGWAVYLYYT 314

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|F1NTH1 SLC35A5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 164 (62.8 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
 Identities = 41/160 (25%), Positives = 79/160 (49%)

Query:    31 KTRVSSKQRVLNVFLVVGDCMLVGLQPILV--YMSKVDGRFKFSPISVNFLTEMTKVLFA 88
             ++ V SK  +   FL+ G  + +G   IL+  Y +  D ++ + P +VN  +E+ K+   
Sbjct:     9 RSAVCSKTTIYT-FLLGGVFITLGSSRILLMKYSANEDNKYDYLPTTVNICSEVVKLFLC 67

Query:    89 IVMLFFQARHQKVGEKP--LLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPA 146
             +V+  +  + +   ++P   LS   F     N++  ++PAFLY ++N + F +  Y  PA
Sbjct:    68 VVLALWVKKKEGCLDRPSGCLSWKNFC----NSMKWSIPAFLYFLDNLIVFYVLSYLQPA 123

Query:   147 TVKMLSNXXXXXXXXXXXXXMRRRFSIIQWEALALLLIGI 186
                + SN             ++R+ S +QW +L +L + I
Sbjct:   124 MAVLFSNFVIITTALLFRIVLKRKLSWVQWASLVILFLSI 163

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|628792 Slc35a4 "solute carrier family 35, member A4" [Rattus norvegicus (taxid:10116)]

 Score = 248 (92.4 bits), Expect = 6.5e-21, P = 6.5e-21
 Identities = 91/326 (27%), Positives = 142/326 (43%)

Query:    37 KQRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQA 96
             KQ    + L +   M     P L  +  VDGR  F P S   LTE+TK+L     L    
Sbjct:    15 KQARWTLMLFLSTAMYGAHAPFLA-LCHVDGRVPFRPSSAVLLTELTKLLLCAFSLLVGW 73

Query:    97 RHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNXXX 156
             +    G  P      + QAA      A+ A LY  NN L   +Q Y +P+T ++LSN   
Sbjct:    74 QTWPQGTPP------WRQAAP----FALSALLYGANNNLVIYLQRYMDPSTYQVLSNLKI 123

Query:   157 XXXXXXXXXXMRRRFSIIQWEALALLLIGISVNQLRSLPE-GSTAMGLPVAMGA------ 209
                       +  R S  Q  AL LL+   +        E G+T  G   A GA      
Sbjct:   124 GSTALLYCLCLGHRLSARQGLALLLLMAAGACYASGGFQEPGNTLPGPRSAAGARPMPLH 183

Query:   210 -----YIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIF 264
                   +  +++  +  ++SV+ E  +K Q    + LQNLFLY +G I N LG+   +  
Sbjct:   184 ITPLGLLLLILYCLISGLSSVYTELIMKRQR-LPLALQNLFLYTFGVILN-LGLYAGS-- 239

Query:   265 KGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVL 324
              GP     L+G S   +L++ N A  G+L    +K+  +I + +  + + +   + SAVL
Sbjct:   240 -GPGP-GFLEGFSGWAVLVVLNQAVNGLLMSAVMKHGSSITRLFIVSCSLVVNAVLSAVL 297

Query:   325 FGHTLTMNFLLGISIVFISMHQFFSS 350
                 LT  F L   ++ +++  ++ S
Sbjct:   298 LQLQLTATFFLAALLIGLAVCLYYGS 323

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GY97	CSTR2_ARATH	No assigned EC number	0.8282	0.9556	0.9556	no	no
Q9C5H6	CSTR3_ARATH	No assigned EC number	0.8329	0.9556	0.9580	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	406
pfam04142	238	pfam04142, Nuc_sug_transp, Nucleotide-sugar transp	3e-33
TIGR00803	222	TIGR00803, nst, UDP-galactose transporter	6e-13

>gnl|CDD|217924 pfam04142, Nuc_sug_transp, Nucleotide-sugar transporter

 Score =  124 bits (313), Expect = 3e-33
 Identities = 65/238 (27%), Positives = 115/238 (48%), Gaps = 16/238 (6%)

Query: 111 TFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRR 170
                  + + +AVPAF+Y + N L ++     + AT ++   LK+L  A+   +++ R+
Sbjct: 9   AIFNNPSDTLKVAVPAFIYTLQNNLLYVALSNLDAATYQVTYQLKILTTALFSVLMLGRK 68

Query: 171 FSIIQWEALALLLIGISVNQLRSL-PEGSTAMGLPVAMGAYIYTLIFITV----PSMASV 225
            S  QW +L LL +G+++ QL     E ++  G           L  +         A V
Sbjct: 69  LSWYQWASLLLLFLGVAIVQLDQKSSETNSKRGAE---QNPGLGLSAVLAACFTSGFAGV 125

Query: 226 FNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVT---AIFKGPDNLDILQGHSKATML 282
           + E  LK   +TSI+++N+ LY +G  F  L   +    AI +         G++     
Sbjct: 126 YFEKILKGS-NTSIWIRNIQLYFFGIFFALLTCWLYDGSAISEK----GFFFGYTAFVWA 180

Query: 283 LIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIV 340
           ++   A  G++    +KYAD ILK +++++A I + +AS +LF    T+ FLLG  +V
Sbjct: 181 VVLLQAVGGLVVAVVVKYADNILKGFATSLAIILSTVASVLLFDFRPTLTFLLGAILV 238

This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. Human SLC35A1 transports CMP-sialic acid, SLC35A2 transports UDP-galactose and SLC35A3 transports UDP-GlcNAc. Length = 238

>gnl|CDD|129885 TIGR00803, nst, UDP-galactose transporter

 Score = 67.4 bits (165), Expect = 6e-13
 Identities = 55/222 (24%), Positives = 98/222 (44%), Gaps = 5/222 (2%)

Query: 122 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALAL 181
           L+VP  +    N L  I  L    A  K ++ LK+L  A++    +       QW +L L
Sbjct: 2   LSVPIHIIFKQNNLVLIA-LGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKL 60

Query: 182 LLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYL 241
           L +G+++ Q+      +   G PV   + + + +  +    A V+ E  LK   DT  + 
Sbjct: 61  LKLGVAIVQMVQSSAKTLMFGNPVVGLSAVLSALLSSG--FAGVYFEKILKD-GDTMFWS 117

Query: 242 QNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKYA 301
           +NL L  +G    F  +L +       N     G+  A  ++   N   G+     ++YA
Sbjct: 118 RNLQLPLFGLFSTFSVLLWSD-GTLISNFGFFIGYPTAVWIVGLLNVGGGLCIGGVVRYA 176

Query: 302 DAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFIS 343
           D   K + + ++ I + +AS  LF   ++  F LG  +VF++
Sbjct: 177 DNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLA 218

The 10-12 TMS Nucleotide Sugar Transporters (TC 2.A.7.10)Nucleotide-sugar transporters (NSTs) are found in the Golgi apparatus and the endoplasmic reticulum of eukaryotic cells. Members of the family have been sequenced from yeast, protozoans and animals. Animals such as C. elegans possess many of these transporters. Humans have at least two closely related isoforms of the UDP-galactose:UMP exchange transporter.NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids. Length = 222

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	406
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	100.0
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	100.0
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.93
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.92
KOG1581	327	consensus UDP-galactose transporter related protei	99.92
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	99.91
PLN00411	358	nodulin MtN21 family protein; Provisional	99.9
PRK15430	296	putative chloramphenical resistance permease RarD;	99.87
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.87
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.87
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.86
KOG3912	372	consensus Predicted integral membrane protein [Gen	99.84
PRK11272	292	putative DMT superfamily transporter inner membran	99.84
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.81
KOG1580	337	consensus UDP-galactose transporter related protei	99.81
PRK11689	295	aromatic amino acid exporter; Provisional	99.81
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.8
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.77
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.72
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.7
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.61
COG2962	293	RarD Predicted permeases [General function predict	99.5
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	99.49
KOG1582	367	consensus UDP-galactose transporter related protei	99.48
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	99.46
KOG2765	416	consensus Predicted membrane protein [Function unk	99.4
KOG1443	349	consensus Predicted integral membrane protein [Fun	99.39
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.37
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	99.3
KOG2766	336	consensus Predicted membrane protein [Function unk	99.17
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	99.05
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.91
COG2510	140	Predicted membrane protein [Function unknown]	98.83
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	98.83
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.81
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	98.77
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	98.69
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.56
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	98.52
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	98.35
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	98.34
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.32
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	98.25
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.23
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.14
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.07
COG2510	140	Predicted membrane protein [Function unknown]	98.06
PLN00411	358	nodulin MtN21 family protein; Provisional	97.96
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.93
PRK10532	293	threonine and homoserine efflux system; Provisiona	97.93
PRK11689	295	aromatic amino acid exporter; Provisional	97.86
PRK11272	292	putative DMT superfamily transporter inner membran	97.86
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	97.81
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.81
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.73
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.64
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	97.62
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.59
PRK11431	105	multidrug efflux system protein; Provisional	97.58
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	97.57
COG2076	106	EmrE Membrane transporters of cations and cationic	97.56
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.49
PRK15430	296	putative chloramphenical resistance permease RarD;	97.48
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.25
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.14
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.11
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	97.07
PRK09541	110	emrE multidrug efflux protein; Reviewed	96.98
PF13536	113	EmrE: Multidrug resistance efflux transporter	96.89
PRK13499	345	rhamnose-proton symporter; Provisional	96.84
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	96.82
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	96.82
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.77
KOG2922	335	consensus Uncharacterized conserved protein [Funct	96.76
COG0697	292	RhaT Permeases of the drug/metabolite transporter	96.71
PRK10650	109	multidrug efflux system protein MdtI; Provisional	96.68
COG2076	106	EmrE Membrane transporters of cations and cationic	96.44
PRK11431	105	multidrug efflux system protein; Provisional	96.42
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	96.29
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	96.27
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	96.27
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	95.95
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	95.74
KOG1581	327	consensus UDP-galactose transporter related protei	95.4
PRK13499	345	rhamnose-proton symporter; Provisional	95.37
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	95.33
COG2962	293	RarD Predicted permeases [General function predict	95.2
KOG1580	337	consensus UDP-galactose transporter related protei	95.07
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	93.96
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	93.7
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	93.18
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	93.16
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	90.81
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	89.16
KOG2922	335	consensus Uncharacterized conserved protein [Funct	87.93
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	87.07
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	86.98
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	85.79
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	85.65
KOG4510	346	consensus Permease of the drug/metabolite transpor	84.48
KOG4831	125	consensus Unnamed protein [Function unknown]	83.4

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1e-52  Score=405.60  Aligned_cols=324  Identities=30%  Similarity=0.461  Sum_probs=268.4

Q ss_pred             hhhccCCcccchhhHHHHHHHHHHHHHHHhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 015473           25 RAYDRHKTRVSSKQRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEK  104 (406)
Q Consensus        25 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~  104 (406)
                      |++|+|....+.++ ...+ .++...++.+.+..++++++.+++.+|.|+++||+.|++|+++|..+++++.++.  .++
T Consensus         1 ~~~~~~~~~~~~~~-~k~~-~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~--~~~   76 (345)
T KOG2234|consen    1 MAVKSMPIISSLSQ-MKYL-SLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKY--AKK   76 (345)
T ss_pred             CCcccccccccHHH-HHHH-HHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHH--hhh
Confidence            45666666666666 4333 3344455666777788888866578899999999999999999999999986431  112


Q ss_pred             Ccchh-HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 015473          105 PLLSI-STFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLL  183 (406)
Q Consensus       105 ~~l~~-~~~~~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~  183 (406)
                      +.... +.++..+|+.++.++||++|++||+++|++++|+|+++||+..|+|+++||+|++++|+||++++||.|+++++
T Consensus        77 ~~~~l~~~i~~~~~~~lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~  156 (345)
T KOG2234|consen   77 SLKSLSKEILAAPRETLKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLF  156 (345)
T ss_pred             hhhhcCHHHHhChHHHHHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            21111 23445667899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhccCCCCCCCC--CCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 015473          184 IGISVNQLRSLPEGST--AMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVT  261 (406)
Q Consensus       184 ~GV~lv~~~~~~~~~~--~~~~~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~  261 (406)
                      +|+.++|.+..+..+.  .........|+..++.+|++||++++|+||++|+. +.+.|+||+|++++|+++++......
T Consensus       157 ~Gv~~vQ~~~~~~~~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s-~~s~wi~NiqL~~~g~~f~~l~~~~~  235 (345)
T KOG2234|consen  157 AGVALVQLPSLSPTGAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGS-NVSLWIRNIQLYFFGILFNLLTILLQ  235 (345)
T ss_pred             HHHHHHhccCCCCCCccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999543221111  11122346799999999999999999999999985 68999999999999999999887643


Q ss_pred             HHhcCCCccccccCChHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Q 015473          262 AIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVF  341 (406)
Q Consensus       262 ~~~~~~~~~~~~~g~~~~~~l~i~~~aigg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi  341 (406)
                      ...++. +.|+|+||++.+|++++.+|+||+++++++||+||+.|++++++++++++++|+.+||.+||..+++|+.+|+
T Consensus       236 d~~~i~-~~gff~G~s~~vw~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi  314 (345)
T KOG2234|consen  236 DGEAIN-EYGFFYGYSSIVWLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVI  314 (345)
T ss_pred             cccccc-cCCccccccHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHH
Confidence            111122 5689999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccccccc
Q 015473          342 ISMHQFFSSLSKA  354 (406)
Q Consensus       342 ~gv~ly~~~~~~~  354 (406)
                      .++++|+.+|++.
T Consensus       315 ~Si~lY~~~P~~~  327 (345)
T KOG2234|consen  315 LSIFLYSLYPARD  327 (345)
T ss_pred             HHHHHhhcCCccc
Confidence            9999999765543

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=100.00  E-value=9.2e-41  Score=317.11  Aligned_cols=228  Identities=33%  Similarity=0.555  Sum_probs=200.2

Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 015473          111 TFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQ  190 (406)
Q Consensus       111 ~~~~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~  190 (406)
                      +.++..|+.+++++||++|+++|++.|++++++||+++|+++|+|+++||++++++||||++++||+|++++++|+++++
T Consensus         9 ~~~~~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~   88 (244)
T PF04142_consen    9 EVWKSPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQ   88 (244)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheee
Confidence            34466788899999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCCCC--CCCC------CccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 015473          191 LRSLPEGS--TAMG------LPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTA  262 (406)
Q Consensus       191 ~~~~~~~~--~~~~------~~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~  262 (406)
                      .++....+  +...      ......|+++++++++++|+++||+||++|++ +.|+|.||+|++++|++++++..... 
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~-~~s~~~~N~qL~~~gi~~~~~~~~~~-  166 (244)
T PF04142_consen   89 LSSSQSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRS-NVSLWIQNMQLYLFGILFNLLALLLS-  166 (244)
T ss_pred             cCCccccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHhcc-
Confidence            77643211  1111      12245799999999999999999999999986 58999999999999999998775431 


Q ss_pred             HhcCCCccccccCChHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Q 015473          263 IFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIV  340 (406)
Q Consensus       263 ~~~~~~~~~~~~g~~~~~~l~i~~~aigg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LV  340 (406)
                      .++...+.|+|+||++++|.+++.+++||+++++++||+||+.|+++++.+++++.++|+++||.+||..+++|..+|
T Consensus       167 ~~~~~~~~g~f~G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V  244 (244)
T PF04142_consen  167 DGSAISESGFFHGYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV  244 (244)
T ss_pred             cccccccCCchhhcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence            112223468999999999999999999999999999999999999999999999999999999999999999998765

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.93  E-value=7.2e-24  Score=207.96  Aligned_cols=292  Identities=17%  Similarity=0.225  Sum_probs=215.1

Q ss_pred             HHHHHHHHHhhHhHhhhh-cccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhHHHH
Q 015473           45 LVVGDCMLVGLQPILVYM-SKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLA  123 (406)
Q Consensus        45 l~~~~~~~~~~~~~l~k~-s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~  123 (406)
                      ++.+.+..+.+++++.+. .+.+... -.+..+.+.+.+.-.+++.......+..+    .+.          +....++
T Consensus         4 ~~~~i~~~~~~~g~~qE~i~~~~~~~-~~~~~lt~~q~~~~~~~~~~~~~~~~~~~----~~~----------~~~~~~~   68 (303)
T PF08449_consen    4 CVAGIFGGCCSYGILQEKIMTTPYGS-PFPLFLTFVQFAFNALFSFILLSLFKFPK----SRK----------IPLKKYA   68 (303)
T ss_pred             eHHHHHHHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHHHHHHHHHHHHHhccccC----CCc----------ChHHHHH
Confidence            344444455555555442 2222211 13667889999999988887766554111    110          1123688


Q ss_pred             HHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCC
Q 015473          124 VPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGL  203 (406)
Q Consensus       124 vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~~~~~  203 (406)
                      ++++++.+.+.+.+.+++|+|.+++++++++||+++++++++++|||++++||+++++.++|+++....+..+.......
T Consensus        69 ~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~  148 (303)
T PF08449_consen   69 ILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSS  148 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999876553222111111


Q ss_pred             -ccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CccccccCChHHH
Q 015473          204 -PVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGP--DNLDILQGHSKAT  280 (406)
Q Consensus       204 -~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~--~~~~~~~g~~~~~  280 (406)
                       .....|+++.+++.+++|+.++++||+++++ +.+.+....+.++++.++.++....  +..++  +...+...++...
T Consensus       149 ~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~-~~~~~~~mfy~n~~~~~~~~~~~~~--l~~~~~~~~~~f~~~~p~~~  225 (303)
T PF08449_consen  149 SFSSALGIILLLLSLLLDAFTGVYQEKLFKKY-GKSPWELMFYTNLFSLPFLLILLFL--LPTGEFRSAIRFISAHPSVL  225 (303)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHHHHHH--HHhhHhhHHHHHHHHhHHHH
Confidence             1112388999999999999999999999886 5566777888888888877665543  00121  1112222333222


Q ss_pred             H---HHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccccccc
Q 015473          281 M---LLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKA  354 (406)
Q Consensus       281 ~---l~i~~~aigg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~~~~~  354 (406)
                      +   +..+.+++|+..+....+..++......++++.+++.++|+++||+++++.+++|.++|+.|+.+|+.+.+||
T Consensus       226 ~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~  302 (303)
T PF08449_consen  226 LYLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK  302 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence            2   2235667788888888999999999999999999999999999999999999999999999999999864443

; GO: 0055085 transmembrane transport

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.92  E-value=1.9e-22  Score=198.74  Aligned_cols=229  Identities=16%  Similarity=0.181  Sum_probs=181.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCC
Q 015473          117 RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPE  196 (406)
Q Consensus       117 r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~  196 (406)
                      ++.+++.+.|++++..|.+...|++|++.+.++++.++.+++++++|+++||+|+++.||+|+++.++|+.++...+...
T Consensus        77 ~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~  156 (334)
T PF06027_consen   77 RPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLS  156 (334)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccc
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999886665432


Q ss_pred             CCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCC
Q 015473          197 GSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGH  276 (406)
Q Consensus       197 ~~~~~~~~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~g~  276 (406)
                      +++..+.+....|.+++++++++.|+++|+.|+..|+.   +......+++++|.+++.+...   +.|..+-.. + .|
T Consensus       157 ~~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~---~~~~~lg~~Glfg~ii~~iq~~---ile~~~i~~-~-~w  228 (334)
T PF06027_consen  157 GSDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKA---PRVEFLGMLGLFGFIISGIQLA---ILERSGIES-I-HW  228 (334)
T ss_pred             cccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccC---CHHHHHHHHHHHHHHHHHHHHH---heehhhhhc-c-CC
Confidence            22221223346799999999999999999999999863   4555667888899888876554   244332111 1 22


Q ss_pred             hHHHHHHH----HHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccccc
Q 015473          277 SKATMLLI----FNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLS  352 (406)
Q Consensus       277 ~~~~~l~i----~~~aigg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~~~  352 (406)
                      ++..+...    +...+...++..++++.++...+....++.+++.+.++++||+++++..++|.++|+.|..+|+..++
T Consensus       229 ~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~  308 (334)
T PF06027_consen  229 TSQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAES  308 (334)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCC
Confidence            32222221    12223445667888999988888888889999999999999999999999999999999999997554


Q ss_pred             c
Q 015473          353 K  353 (406)
Q Consensus       353 ~  353 (406)
                      +
T Consensus       309 ~  309 (334)
T PF06027_consen  309 P  309 (334)
T ss_pred             c
Confidence            4

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.92  E-value=5.3e-23  Score=194.65  Aligned_cols=294  Identities=15%  Similarity=0.196  Sum_probs=236.2

Q ss_pred             hhHHHHHHHHHHHHHHHhhHhHhhh-hcc----cCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHH
Q 015473           37 KQRVLNVFLVVGDCMLVGLQPILVY-MSK----VDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSIST  111 (406)
Q Consensus        37 k~~~l~~ll~~~~~~~~~~~~~l~k-~s~----~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~  111 (406)
                      +....+++|+.+.+..|..++++++ ...    +|+++.-++.-.+|.+.++.++++..++..++.. ..+..|      
T Consensus        10 ~~~~~L~~c~~GI~~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~-~~~~ap------   82 (327)
T KOG1581|consen   10 NKIILLVFCFSGIYATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLKWWKKE-LSGVAP------   82 (327)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHhccccc-CCCCCc------
Confidence            3344458899999999999998854 322    2444444666789999999999998877655432 111111      


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcc
Q 015473          112 FIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQL  191 (406)
Q Consensus       112 ~~~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~  191 (406)
                             .+.+...+..+.+...|+|.||+|++.++..+.+++|++.++++..++.|+|++..++++.++...||.++.+
T Consensus        83 -------l~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l  155 (327)
T KOG1581|consen   83 -------LYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSL  155 (327)
T ss_pred             -------hhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEE
Confidence                   2368899999999999999999999999999999999999999999999999999999999999999999877


Q ss_pred             CCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--c
Q 015473          192 RSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPD--N  269 (406)
Q Consensus       192 ~~~~~~~~~~~~~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~--~  269 (406)
                      .+.+++....+.+...+|+.++...-+++|+.+..++++.|++ +.+.+.++..+++++.+.+...++.    +|..  +
T Consensus       156 ~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~-k~s~~~mM~~vNLf~~i~~~~~li~----qg~~~~a  230 (327)
T KOG1581|consen  156 FPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKY-KVSSLHMMFGVNLFSAILNGTYLIL----QGHLLPA  230 (327)
T ss_pred             ecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccC-CccHhHHHHHHHHHHHHHHHHhhhc----CCCCchH
Confidence            6544333344555567899999999999999999999999975 7888989999999999999877542    3321  2


Q ss_pred             cccccCChHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHH
Q 015473          270 LDILQGHSKATMLL---IFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQ  346 (406)
Q Consensus       270 ~~~~~g~~~~~~l~---i~~~aigg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~l  346 (406)
                      ..|...++...+-+   -...++|+.++.+.++..++++-...++++-++++++|.++||++++..+++|..+|+.|+++
T Consensus       231 v~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l  310 (327)
T KOG1581|consen  231 VSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL  310 (327)
T ss_pred             HHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence            23444444333333   356788999999999999999999999999999999999999999999999999999999986


Q ss_pred             hcc
Q 015473          347 FFS  349 (406)
Q Consensus       347 y~~  349 (406)
                      =..
T Consensus       311 ~~~  313 (327)
T KOG1581|consen  311 EIL  313 (327)
T ss_pred             HHH
Confidence            544

>TIGR00803 nst UDP-galactose transporter

Probab=99.91  E-value=9.5e-24  Score=197.95  Aligned_cols=218  Identities=23%  Similarity=0.312  Sum_probs=186.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCCC
Q 015473          122 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAM  201 (406)
Q Consensus       122 ~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~~~  201 (406)
                      +.+|+..|+.+|.+.++++.+.++...+.. |.|++.++++....++++++..||.++.++..|+..++.++..+.... 
T Consensus         2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~-~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~-   79 (222)
T TIGR00803         2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVT-QLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLM-   79 (222)
T ss_pred             ccccchHHHHhcchHHHHHhcccccceeee-hHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccc-
Confidence            468999999999999999999999999999 999999999999999999999999999999999998865542211111 


Q ss_pred             CCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CccccccCChH
Q 015473          202 GLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGP---DNLDILQGHSK  278 (406)
Q Consensus       202 ~~~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~---~~~~~~~g~~~  278 (406)
                       ......|..+.+.++++++++++|.|+..|.+ +.+.|.+|+++++++.+.+......    .+.   ...+++++++.
T Consensus        80 -~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~-~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  153 (222)
T TIGR00803        80 -FGNPVVGLSAVLSALLSSGFAGVYFEKILKDG-DTMFWSRNLQLPLFGLFSTFSVLLW----SDGTLISNFGFFIGYPT  153 (222)
T ss_pred             -cccHHHHHHHHHHHHHHHhhhHHHHHHcccCC-CCchHHHHHHHHHHHHHHHHHHHhh----cccchhhccCcccCCch
Confidence             11234577778888999999999999997764 5779999999999998866543332    221   13456788998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHh
Q 015473          279 ATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQF  347 (406)
Q Consensus       279 ~~~l~i~~~aigg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly  347 (406)
                      ..|..++.++++|+++++++||+|+++|+++++++++++.++|+++|||+++..+++|+.+|+.|+++|
T Consensus       154 ~~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY  222 (222)
T TIGR00803       154 AVWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY  222 (222)
T ss_pred             HHHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence            999999999999999999999999999999999999999999999999999999999999999999887

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.90  E-value=2.2e-20  Score=187.02  Aligned_cols=278  Identities=14%  Similarity=0.137  Sum_probs=187.7

Q ss_pred             HHhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhHHHHHHHHHHHH
Q 015473           52 LVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAI  131 (406)
Q Consensus        52 ~~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~vpAlly~~  131 (406)
                      .|+.+.++.|.+-++|   .++...+++|-.+.-++..++...+++...   +|...       +|+...+++.+++.++
T Consensus        24 ~~~~~~~~~k~a~~~G---~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~---~~~~~-------~~~~~~l~l~g~~g~~   90 (358)
T PLN00411         24 SVVGISTLFKVATSKG---LNIYPFLGYSYLLASLLLLPSLFFTNRSRS---LPPLS-------VSILSKIGLLGFLGSM   90 (358)
T ss_pred             HHHHHHHHHHHHHHCC---CCccHHHHHHHHHHHHHHHHHHHHHHHhcc---cCcch-------HHHHHHHHHHHHHHHH
Confidence            3666667777665443   456677899988887666665544332111   11111       1333456777776667


Q ss_pred             HHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHH------hCCCCCHHHHHHHHHHHHHHhhhccCCCCCC--------
Q 015473          132 NNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKII------MRRRFSIIQWEALALLLIGISVNQLRSLPEG--------  197 (406)
Q Consensus       132 ~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~------Lkerls~~qwlal~ll~~GV~lv~~~~~~~~--------  197 (406)
                      ++.+.|++++|++++.+.++.++.|++|+++++++      +|||++++||+++++.++|++++...+....        
T Consensus        91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~  170 (358)
T PLN00411         91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPY  170 (358)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccccc
Confidence            88899999999999999999999999999999999      6999999999999999999988754321100        


Q ss_pred             ------C--CCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHH-HHHHHHHHHHHHHhcCCC
Q 015473          198 ------S--TAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYG-AIFNFLGILVTAIFKGPD  268 (406)
Q Consensus       198 ------~--~~~~~~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g-~l~~l~~~~~~~~~~~~~  268 (406)
                            .  ...+......|.++.++++++++++.+..++..+++  .+....+.+....+ ..+..+..    ..++..
T Consensus       171 ~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~l----~~~~~~  244 (358)
T PLN00411        171 LNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEY--PAAFTVSFLYTVCVSIVTSMIGL----VVEKNN  244 (358)
T ss_pred             ccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CcHhHHHHHHHHHHHHHHHHHHH----HHccCC
Confidence                  0  000111123488889999999999999999987764  23323333333332 22222222    223221


Q ss_pred             ccccccCChHHHHHHHHHHHH----HHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHH
Q 015473          269 NLDILQGHSKATMLLIFNNAA----QGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISM  344 (406)
Q Consensus       269 ~~~~~~g~~~~~~l~i~~~ai----gg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv  344 (406)
                      .......++...+ .+++.++    +..+-.+.+|+.++...+...++.+++++++|++++||++++.+++|+++|+.|+
T Consensus       245 ~~~~~~~~~~~~~-~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv  323 (358)
T PLN00411        245 PSVWIIHFDITLI-TIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGF  323 (358)
T ss_pred             cccceeccchHHH-HHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence            1111122332222 2333333    3333445677888888899999999999999999999999999999999999999


Q ss_pred             HHhcc
Q 015473          345 HQFFS  349 (406)
Q Consensus       345 ~ly~~  349 (406)
                      ++...
T Consensus       324 ~l~~~  328 (358)
T PLN00411        324 YAVMW  328 (358)
T ss_pred             HHHHh
Confidence            99876

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.87  E-value=2.5e-19  Score=175.25  Aligned_cols=270  Identities=15%  Similarity=0.193  Sum_probs=184.4

Q ss_pred             HHHHHHHHHHhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhHHHH
Q 015473           44 FLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLA  123 (406)
Q Consensus        44 ll~~~~~~~~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~  123 (406)
                      ++++..++.|+.+++..|..  + +  ++|.++++.|-++..++...++..+++.      +..+ +.+ +..++.....
T Consensus        11 ~~~l~a~~~wg~~~~~~k~~--~-~--~~~~~~~~~R~~~a~~~l~~~~~~~~~~------~~~~-~~~-~~~~~~~~~~   77 (296)
T PRK15430         11 LLALAAYFIWGIAPAYFKLI--Y-Y--VPADEILTHRVIWSFFFMVVLMSICRQW------SYLK-TLI-QTPQKIFMLA   77 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHh--c-C--CCHHHHHHHHHHHHHHHHHHHHHHHccH------HHHH-HHH-cCHHHHHHHH
Confidence            45666777899999888875  2 2  6799999999999877555544332210      0000 001 1122222344


Q ss_pred             HHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCC
Q 015473          124 VPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGL  203 (406)
Q Consensus       124 vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~~~~~  203 (406)
                      ..++..++++.++|++++++|+++..++.++.|+++++++++++|||++++||.+++++++|+.++..+.   ++    .
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~---~~----~  150 (296)
T PRK15430         78 VSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTF---GS----L  150 (296)
T ss_pred             HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHc---CC----c
Confidence            5667788999999999999999999999999999999999999999999999999999999999874321   11    1


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHHH
Q 015473          204 PVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLL  283 (406)
Q Consensus       204 ~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~l~  283 (406)
                            .++++++++++|++.++.|+..++. .......+.+...++.+.    ...  ....+..  .....++..|..
T Consensus       151 ------~~~~l~aa~~~a~~~i~~r~~~~~~-~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~--~~~~~~~~~~~~  215 (296)
T PRK15430        151 ------PIIALGLAFSFAFYGLVRKKIAVEA-QTGMLIETMWLLPVAAIY----LFA--IADSSTS--HMGQNPMSLNLL  215 (296)
T ss_pred             ------cHHHHHHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHHHHH----HHH--HccCCcc--cccCCcHHHHHH
Confidence                  1346778889999998888864321 122233333333333222    110  1111110  011111111111


Q ss_pred             H----HHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhc
Q 015473          284 I----FNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFF  348 (406)
Q Consensus       284 i----~~~aigg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~  348 (406)
                      +    +..+++..+....+|+.++...+...+..++++.++|++++||+|+..+++|+++|+.++-+..
T Consensus       216 ~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~  284 (296)
T PRK15430        216 LIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFV  284 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            1    2344566778888899999999999999999999999999999999999999999987665443

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.87  E-value=2e-19  Score=176.12  Aligned_cols=253  Identities=11%  Similarity=0.142  Sum_probs=175.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHh
Q 015473           73 PISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLS  152 (406)
Q Consensus        73 ~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~  152 (406)
                      |..+.+.+-++..+++..+ .+.+.+.    ++..+.       ++.......+++++.++.+.+++++|++++.++++.
T Consensus        31 P~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~-------~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~   98 (302)
T TIGR00817        31 PYFKTLISLAVGSLYCLLS-WSSGLPK----RLKISS-------ALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIK   98 (302)
T ss_pred             hHHHHHHHHHHHHHHHHHH-HHhCCCC----CCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            5667778877776554443 2111111    111211       233356667788889999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015473          153 NLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALK  232 (406)
Q Consensus       153 ~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~~~~~~~~~~G~ll~L~a~~~sala~V~~ekllk  232 (406)
                      ++.|+++++++++++|||+++++|.++++.++|+++....+   .      +....|.++++++++++++..++.||..+
T Consensus        99 ~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~---~------~~~~~G~~~~l~a~~~~a~~~v~~k~~~~  169 (302)
T TIGR00817        99 AMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTE---L------SFNWAGFLSAMISNITFVSRNIFSKKAMT  169 (302)
T ss_pred             hcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCc---c------cccHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999998753211   1      12346889999999999999999999877


Q ss_pred             hcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--ccccc---CCh-HHHHHHHHHHHHHH-----HHHHHHHHHh
Q 015473          233 SQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDN--LDILQ---GHS-KATMLLIFNNAAQG-----ILSCFFLKYA  301 (406)
Q Consensus       233 ~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~--~~~~~---g~~-~~~~l~i~~~aigg-----~~v~~~~ky~  301 (406)
                      ++ +.++...+.+....+.++.+|....   .+++..  .+...   ..+ ...+..++..+++.     ......+|+.
T Consensus       170 ~~-~~~~~~~~~~~~~~~~~~l~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  245 (302)
T TIGR00817       170 IK-SLDKTNLYAYISIMSLFLLSPPAFI---TEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRV  245 (302)
T ss_pred             cC-CCCcccHHHHHHHHHHHHHHHHHHH---HcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            31 2344444555555666555554332   232210  00000   011 11222222222211     1222467888


Q ss_pred             hhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015473          302 DAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS  350 (406)
Q Consensus       302 ~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~  350 (406)
                      ++...+....+.+++++++|++++||++|..+++|+++++.|+++|++.
T Consensus       246 sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~  294 (302)
T TIGR00817       246 SPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRV  294 (302)
T ss_pred             CchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence            8888888899999999999999999999999999999999999999874

specificities overlap.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.87  E-value=5.8e-19  Score=176.68  Aligned_cols=289  Identities=12%  Similarity=0.163  Sum_probs=193.4

Q ss_pred             cccchhhHHHHHHHHHHHHHHHhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcch-hH
Q 015473           32 TRVSSKQRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLS-IS  110 (406)
Q Consensus        32 ~~~~~k~~~l~~ll~~~~~~~~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~-~~  110 (406)
                      .+...|-..++..+...+...    ....|..-++  ++| |.++..+|-++..+++..+. ..+.+.    +|... .+
T Consensus        44 ~~~~~~~~~~~~~wy~~s~~~----~~~nK~vl~~--~~~-P~~l~~~~~~~~~l~~~~~~-~~~~~~----~~~~~~~~  111 (350)
T PTZ00343         44 PNFKWKLALLFLTWYALNVLY----VVDNKLALNM--LPL-PWTISSLQLFVGWLFALLYW-ATGFRK----IPRIKSLK  111 (350)
T ss_pred             CcccHHHHHHHHHHHHHHHHH----HHHHHHHHHh--CCh-hHHHHHHHHHHHHHHHHHHH-HhCCCC----CCCCCCHH
Confidence            334444444544454544432    2234433222  222 77888899888877665442 211111    12111 11


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 015473          111 TFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQ  190 (406)
Q Consensus       111 ~~~~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~  190 (406)
                            ++.......++++...+...+.++++.+++.+++++.+.|+++++++++++|||+++++|+++++.++|+.+..
T Consensus       112 ------~~~~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~  185 (350)
T PTZ00343        112 ------LFLKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS  185 (350)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence                  12235677778888777888899999999999999999999999999999999999999999999999999975


Q ss_pred             cCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--cchHHHHHHH--HHHHHHHHHHHHHHHHHhcC
Q 015473          191 LRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYD--TSIYLQNLFL--YGYGAIFNFLGILVTAIFKG  266 (406)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~--~s~~~~~~~l--~~~g~l~~l~~~~~~~~~~~  266 (406)
                      ..+         .+.+..|+++++++++++++.+++.||++++...  .+....+.+.  ...|.++.+|....   .|+
T Consensus       186 ~~~---------~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~---~e~  253 (350)
T PTZ00343        186 VKE---------LHFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLF---FEG  253 (350)
T ss_pred             ccc---------chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHH---Hhh
Confidence            321         1224569999999999999999999998875310  0111223333  45666666665432   232


Q ss_pred             CCccc-------cccCChH-HHHHHHHHHHHHHHHHH----HHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHH
Q 015473          267 PDNLD-------ILQGHSK-ATMLLIFNNAAQGILSC----FFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFL  334 (406)
Q Consensus       267 ~~~~~-------~~~g~~~-~~~l~i~~~aigg~~v~----~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~  334 (406)
                      +....       .+..+.+ ..+..++..++.+.+..    ..+++.++...+.+.++.+++++++|+++|||++|..++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~  333 (350)
T PTZ00343        254 KKWVPVWTNYTANMTNYTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGY  333 (350)
T ss_pred             HHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhH
Confidence            11000       0111111 11222333344444434    467888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccc
Q 015473          335 LGISIVFISMHQFFSS  350 (406)
Q Consensus       335 lG~~LVi~gv~ly~~~  350 (406)
                      +|.++++.|+++|+..
T Consensus       334 iG~~lii~Gv~lYs~~  349 (350)
T PTZ00343        334 LGMAVAILGALLYSLF  349 (350)
T ss_pred             HHHHHHHHHHHHHhhc
Confidence            9999999999999874

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.86  E-value=2e-18  Score=169.08  Aligned_cols=274  Identities=18%  Similarity=0.156  Sum_probs=182.5

Q ss_pred             HHHHHHHHHhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhHHHHH
Q 015473           45 LVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAV  124 (406)
Q Consensus        45 l~~~~~~~~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~v  124 (406)
                      +.+..++.+++..+.+|..-+  +  .+|...+++|-.+..++.+.++.  .+  +   ++ .         +   ....
T Consensus         8 ~~l~~~~~Wg~~~~~~k~~~~--~--~~p~~~~~~R~~~a~~~l~~~~~--~~--~---~~-~---------~---~~~~   63 (299)
T PRK11453          8 LALLVVVVWGLNFVVIKVGLH--N--MPPLMLAGLRFMLVAFPAIFFVA--RP--K---VP-L---------N---LLLG   63 (299)
T ss_pred             HHHHHHHHHhhhHHHHHHHHh--c--CCHHHHHHHHHHHHHHHHHHHhc--CC--C---Cc-h---------H---HHHH
Confidence            455667789999888887633  2  67999999999876544333221  11  0   11 0         1   1112


Q ss_pred             HHH-HHHHHHHHHHHHHhc-cChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCCCC
Q 015473          125 PAF-LYAINNYLKFIMQLY-FNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMG  202 (406)
Q Consensus       125 pAl-ly~~~n~L~f~al~~-l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~~~~  202 (406)
                      -++ .+..+..+.|.++++ .|++...++.++.|+++++++++++|||++++||+++++.++|+.++..++.+ +     
T Consensus        64 ~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~-~-----  137 (299)
T PRK11453         64 YGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLN-G-----  137 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCC-C-----
Confidence            233 234566678889988 78899999999999999999999999999999999999999999887533211 1     


Q ss_pred             CccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-ccccCChHHHH
Q 015473          203 LPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNL-DILQGHSKATM  281 (406)
Q Consensus       203 ~~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~-~~~~g~~~~~~  281 (406)
                      .+.+..|.+++++++++++++.++.||..++..+......+.+....+.+   +........+++... ..+..++...|
T Consensus       138 ~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (299)
T PRK11453        138 QHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPII---PFFVASLILDGSATMIHSLVTIDMTTI  214 (299)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHH---HHHHHHHHhcCchhhhhhhccCCHHHH
Confidence            11223588999999999999999999976543111111112222222211   111111122332110 11223444556


Q ss_pred             HHHHHHHHHHHHHHH-----HHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcccc
Q 015473          282 LLIFNNAAQGILSCF-----FLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSL  351 (406)
Q Consensus       282 l~i~~~aigg~~v~~-----~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~~  351 (406)
                      ..+++.++.+..+++     .+++.++.......++.|+++.++|++++||+++..+++|+++|+.|+++-..+.
T Consensus       215 ~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~  289 (299)
T PRK11453        215 LSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL  289 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence            666666655554444     3466677777788889999999999999999999999999999999999876543

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=99.84  E-value=1.4e-18  Score=162.72  Aligned_cols=305  Identities=14%  Similarity=0.165  Sum_probs=205.0

Q ss_pred             hHHHHHHHHHHHHHHHhhHhHhhhhcc---cCCc----ccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC-CCcchh
Q 015473           38 QRVLNVFLVVGDCMLVGLQPILVYMSK---VDGR----FKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGE-KPLLSI  109 (406)
Q Consensus        38 ~~~l~~ll~~~~~~~~~~~~~l~k~s~---~~g~----~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~-~~~l~~  109 (406)
                      ++.++-++|+.+...   ..++.|++.   .+|.    -++-.+...|+.|+..+.+-..+-.+..++...++ ...++.
T Consensus         3 ~~v~ls~imvvsGs~---Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq   79 (372)
T KOG3912|consen    3 HRVFLSLIMVVSGSF---NTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQ   79 (372)
T ss_pred             hhhhhhhhhhhhccH---HHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccccccc
Confidence            444444455444432   345677765   2222    13444567899998877655444333222111110 001110


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhh
Q 015473          110 STFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVN  189 (406)
Q Consensus       110 ~~~~~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv  189 (406)
                      .   ..+-++..+..||+++.....+.|+++.+++++.+|+++...++||++|+..+|||+++.+||+++....+|++++
T Consensus        80 ~---~~pf~p~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviV  156 (372)
T KOG3912|consen   80 D---SSPFNPVLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIV  156 (372)
T ss_pred             c---cCCCCcceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhhee
Confidence            0   0023456788899999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccCCCCCCC-CCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHH-HHHHHHHHHHHHHhcCC
Q 015473          190 QLRSLPEGS-TAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYG-AIFNFLGILVTAIFKGP  267 (406)
Q Consensus       190 ~~~~~~~~~-~~~~~~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g-~l~~l~~~~~~~~~~~~  267 (406)
                      ...+....+ +.........|.++.+++.++-|...++.||.+|++ +..+..-.-+-.++| .+++++.+....+..++
T Consensus       157 g~~d~~~~~~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~-nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~  235 (372)
T KOG3912|consen  157 GSLDVHLVTDPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKS-NVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGD  235 (372)
T ss_pred             eeeecccccCCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhc-cCCHHHHhhhhhhHHHHHHHHHHHHHhheecCC
Confidence            654321111 111112235688999999999999999999999986 566655555667788 44444444433332332


Q ss_pred             C----ccccccCChHHHHHH-----HHHHHHHHHHHH---------HHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCc
Q 015473          268 D----NLDILQGHSKATMLL-----IFNNAAQGILSC---------FFLKYADAILKKYSSTVATIFTGIASAVLFGHTL  329 (406)
Q Consensus       268 ~----~~~~~~g~~~~~~l~-----i~~~aigg~~v~---------~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~  329 (406)
                      +    +.+.++.+. ..|..     .+..+++|.+++         .+.|+.++..+......+.++..+++..+++|.+
T Consensus       236 sfS~~~~g~~eD~~-~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f  314 (372)
T KOG3912|consen  236 SFSCNPRGVLEDWG-DAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYF  314 (372)
T ss_pred             cCcCCCCcchhhHH-HHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHH
Confidence            1    123233322 11111     123344444444         4568888888888888999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHhccc
Q 015473          330 TMNFLLGISIVFISMHQFFSS  350 (406)
Q Consensus       330 t~~~~lG~~LVi~gv~ly~~~  350 (406)
                      ...++.|.++.+.|+++|+.-
T Consensus       315 ~llqilGFliLi~Gi~lY~~i  335 (372)
T KOG3912|consen  315 HLLQILGFLILIMGIILYNQI  335 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999863

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.84  E-value=1.2e-17  Score=163.10  Aligned_cols=269  Identities=13%  Similarity=0.124  Sum_probs=188.4

Q ss_pred             HHHHHHHHHHHhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhHHH
Q 015473           43 VFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLL  122 (406)
Q Consensus        43 ~ll~~~~~~~~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~  122 (406)
                      +++.+...+.+++..+.+|...++    .+|.+.+++|-++..++-+++...++++     ++  +.       ++....
T Consensus        10 ~~~~~~~~~iWg~~~~~~K~~~~~----~~p~~~~~~R~~~a~l~ll~~~~~~~~~-----~~--~~-------~~~~~~   71 (292)
T PRK11272         10 FGALFALYIIWGSTYLVIRIGVES----WPPLMMAGVRFLIAGILLLAFLLLRGHP-----LP--TL-------RQWLNA   71 (292)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHHHHHHhCCC-----CC--cH-------HHHHHH
Confidence            555666677799988899876442    6799999999999877766655443321     11  11       122234


Q ss_pred             HHHHHH-HHHHHHHHHHHH-hccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCC
Q 015473          123 AVPAFL-YAINNYLKFIMQ-LYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTA  200 (406)
Q Consensus       123 ~vpAll-y~~~n~L~f~al-~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~~  200 (406)
                      .+.+.+ ...++.+.+.+. ++++++...++.++.|+++++++++ +|||++++||.++++.++|+.++..++.  .   
T Consensus        72 ~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~--~---  145 (292)
T PRK11272         72 ALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGN--L---  145 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcc--c---
Confidence            445544 457788899999 9999999999999999999999986 7999999999999999999988743221  1   


Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHH
Q 015473          201 MGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKAT  280 (406)
Q Consensus       201 ~~~~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~  280 (406)
                         +....|.++.+++++++|+++++.||..++   .+......++ ..+.+...+...    ..+..   .....+...
T Consensus       146 ---~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~----~~~~~---~~~~~~~~~  211 (292)
T PRK11272        146 ---SGNPWGAILILIASASWAFGSVWSSRLPLP---VGMMAGAAEM-LAAGVVLLIASL----LSGER---LTALPTLSG  211 (292)
T ss_pred             ---ccchHHHHHHHHHHHHHHHHHHHHHhcCCC---cchHHHHHHH-HHHHHHHHHHHH----HcCCc---ccccCCHHH
Confidence               112358899999999999999999886433   2333333333 333333222211    12211   011123344


Q ss_pred             HHHHHHHHHHH-----HHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcc
Q 015473          281 MLLIFNNAAQG-----ILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFS  349 (406)
Q Consensus       281 ~l~i~~~aigg-----~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~  349 (406)
                      |..+++.++.+     .+....+|+.++...+...+..++++.+++++++||++|..+++|+++++.|+++.+.
T Consensus       212 ~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~  285 (292)
T PRK11272        212 FLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTL  285 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            54444444443     4445566788888888888999999999999999999999999999999999988765

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.81  E-value=3.1e-17  Score=156.49  Aligned_cols=250  Identities=13%  Similarity=0.108  Sum_probs=173.7

Q ss_pred             HhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhHHHHHHH-HHHHHHHH
Q 015473           56 QPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPA-FLYAINNY  134 (406)
Q Consensus        56 ~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~vpA-lly~~~n~  134 (406)
                      ..+..|..-++ .  .++..+.+.|-+...++..+...++ .       +   .       ++...+.+.+ +...+++.
T Consensus         4 ~~~~~k~~~~~-~--~~~~~~~~~r~~~~~l~l~~~~~~~-~-------~---~-------~~~~~~~~~~~~~~~l~~~   62 (260)
T TIGR00950         4 TGVVIGQYLEG-Q--VPLYFAVFRRLIFALLLLLPLLRRR-P-------P---L-------KRLLRLLLLGALQIGVFYV   62 (260)
T ss_pred             hHHHHHHHHhc-C--CCHHHHHHHHHHHHHHHHHHHHHhc-c-------C---H-------hHHHHHHHHHHHHHHHHHH
Confidence            34455654222 2  4577777777777666554443322 1       0   0       1112344554 55679999


Q ss_pred             HHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCccchHHHHHHH
Q 015473          135 LKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTL  214 (406)
Q Consensus       135 L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~~~~~~~~~~G~ll~L  214 (406)
                      +.|.|++++|+++..++.++.|+++++++.+++|||++++||.++++.++|+.++..++.  .      +....|+++.+
T Consensus        63 ~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~--~------~~~~~G~~~~l  134 (260)
T TIGR00950        63 LYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGN--L------SINPAGLLLGL  134 (260)
T ss_pred             HHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCc--c------cccHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988753321  1      12245889999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHHHH-----HHHHH
Q 015473          215 IFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLI-----FNNAA  289 (406)
Q Consensus       215 ~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~l~i-----~~~ai  289 (406)
                      +++++++...++.|+..++. +.+....+.+....+.++..+...    ..++..     ..+...|..+     +...+
T Consensus       135 ~a~~~~a~~~~~~k~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~-----~~~~~~~~~~~~~~~~~~~~  204 (260)
T TIGR00950       135 GSGISFALGTVLYKRLVKKE-GPELLQFTGWVLLLGALLLLPFAW----FLGPNP-----QALSLQWGALLYLGLIGTAL  204 (260)
T ss_pred             HHHHHHHHHHHHHhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHH----hcCCCC-----CcchHHHHHHHHHHHHHHHH
Confidence            99999999999999987653 222222332334444444333322    222211     1122233222     23344


Q ss_pred             HHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHH
Q 015473          290 QGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISM  344 (406)
Q Consensus       290 gg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv  344 (406)
                      +..+....+|+.+........++.++++.+++++++||+++..+++|..+++.|+
T Consensus       205 ~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       205 AYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            5556667788889888899999999999999999999999999999999999885

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.81  E-value=3e-19  Score=163.43  Aligned_cols=255  Identities=12%  Similarity=0.128  Sum_probs=192.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHhhcccCCCCCcchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHh
Q 015473           74 ISVNFLTEMTKVLFAIVMLF-FQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLS  152 (406)
Q Consensus        74 ~~vv~~~E~~kl~i~~~ll~-~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~  152 (406)
                      -+.||+++...-+++=+++. +...+..   +            -+.+.++.-++-|.+...-...|++++|.+|..+-+
T Consensus        54 laLVf~qC~~N~vfAkvl~~ir~~~~~D---~------------t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgK  118 (337)
T KOG1580|consen   54 LALVFFQCTANTVFAKVLFLIRKKTEID---N------------TPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGK  118 (337)
T ss_pred             HHHHHHHHHHHHHHHHhheeeccccccc---C------------CcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcc
Confidence            35789998888888744433 3222111   1            123468888999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015473          153 NLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALK  232 (406)
Q Consensus       153 ~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~~~~~~~~~~G~ll~L~a~~~sala~V~~ekllk  232 (406)
                      ++||+.++++.+++.+++++|+++.++++..+||++.-+++...+...  ......|-++.+++..+.|+.+..+|++.+
T Consensus       119 ScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e--~~t~g~GElLL~lSL~mDGlTg~~Qdrira  196 (337)
T KOG1580|consen  119 SCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAE--DKTFGFGELLLILSLAMDGLTGSIQDRIRA  196 (337)
T ss_pred             cCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCc--ccccchHHHHHHHHHHhcccchhHHHHHHH
Confidence            999999999999999999999999999999999999977753221110  011124778888899999999999999877


Q ss_pred             hcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc--ccccCChHHHHH---HHHHHHHHHHHHHHHHHHhhhHHHH
Q 015473          233 SQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNL--DILQGHSKATML---LIFNNAAQGILSCFFLKYADAILKK  307 (406)
Q Consensus       233 ~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~--~~~~g~~~~~~l---~i~~~aigg~~v~~~~ky~~~i~k~  307 (406)
                      .+. ++-...+.++++|+++....+++    +.|+.++  -|.+-++...|-   ..+...+|+.++...+.+.++...+
T Consensus       197 ~yq-~~g~~MM~~~NlwStL~Lg~g~l----fTGElweF~yF~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCS  271 (337)
T KOG1580|consen  197 SYQ-RTGTSMMFYTNLWSTLYLGAGLL----FTGELWEFFYFVQRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCS  271 (337)
T ss_pred             hhc-cCchhhHHHHHHHHHHHhhhhhe----ehhhHHHHHHHHHhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEE
Confidence            652 23333566777888887655554    3444211  122334433332   2356778999999999999999999


Q ss_pred             HHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015473          308 YSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS  350 (406)
Q Consensus       308 ~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~  350 (406)
                      ..++++..|+++.|+++|+++++..+|+|..+|+.+...=...
T Consensus       272 ivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~  314 (337)
T KOG1580|consen  272 IVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVD  314 (337)
T ss_pred             EEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhc
Confidence            9999999999999999999999999999999999988754443

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.81  E-value=4.2e-17  Score=159.47  Aligned_cols=270  Identities=11%  Similarity=0.055  Sum_probs=179.9

Q ss_pred             HHHHHHHHHhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhHHHHH
Q 015473           45 LVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAV  124 (406)
Q Consensus        45 l~~~~~~~~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~v  124 (406)
                      +++..++.++.+-+..|..-++    ++|....++|-.+..++...+.   .+       |..+.     ..+.  ....
T Consensus         8 ~~l~a~~~Wg~~~~~~k~~~~~----~~P~~~~~~R~~~a~l~l~~~~---~~-------~~~~~-----~~~~--~~~~   66 (295)
T PRK11689          8 IGLIAILLWSTMVGLIRGVSES----LGPVGGAAMIYSVSGLLLLLTV---GF-------PRLRQ-----FPKR--YLLA   66 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcc----CChHHHHHHHHHHHHHHHHHHc---cc-------ccccc-----ccHH--HHHH
Confidence            4556677788887888876333    6798999999877765544332   11       00000     0011  2223


Q ss_pred             HHHHHHHHHHHHHHHHhc----cChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCC-CC
Q 015473          125 PAFLYAINNYLKFIMQLY----FNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEG-ST  199 (406)
Q Consensus       125 pAlly~~~n~L~f~al~~----l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~-~~  199 (406)
                      -++.+++++.+.|.++++    +++.+..++.++.|+++++++++++|||++++||.++++.++|+.++..++.+.+ .+
T Consensus        67 ~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~  146 (295)
T PRK11689         67 GGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAE  146 (295)
T ss_pred             HhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhh
Confidence            345567788888887754    6888889999999999999999999999999999999999999988754321100 00


Q ss_pred             -CCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChH
Q 015473          200 -AMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSK  278 (406)
Q Consensus       200 -~~~~~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~g~~~  278 (406)
                       ..+......|.++++.+++++|++.++.||..++.   ++..  ......+..+ .+..    ..+++.    ....++
T Consensus       147 ~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~---~~~~--~~~~~~~~~l-~~~~----~~~~~~----~~~~~~  212 (295)
T PRK11689        147 LINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGK---NGIT--LFFILTALAL-WIKY----FLSPQP----AMVFSL  212 (295)
T ss_pred             hhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCC---Cchh--HHHHHHHHHH-HHHH----HHhcCc----cccCCH
Confidence             00111123588999999999999999999975543   2221  1111222221 1111    122221    112333


Q ss_pred             HHHHHHHHHH----HHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcc
Q 015473          279 ATMLLIFNNA----AQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFS  349 (406)
Q Consensus       279 ~~~l~i~~~a----igg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~  349 (406)
                      ..|..+++.+    ++..+-...+|+.++...+...++.|+++++++++++||+++..+++|+++|+.|+++...
T Consensus       213 ~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~  287 (295)
T PRK11689        213 PAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL  287 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence            3343333322    3344555777888999889999999999999999999999999999999999999987654

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.80  E-value=1.3e-16  Score=155.78  Aligned_cols=263  Identities=12%  Similarity=0.000  Sum_probs=181.3

Q ss_pred             HHHHHHHHHHhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhHHHH
Q 015473           44 FLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLA  123 (406)
Q Consensus        44 ll~~~~~~~~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~  123 (406)
                      .+++..+++++..+.+.|+.-++    ++|.+.++.|.++..++...+..+.+.      +  .+.       ++.....
T Consensus        15 ~~~~la~~~~~~~~~~~K~~~~~----~~~~~~~~~R~~~a~l~l~~~~~~~~~------~--~~~-------~~~~~~~   75 (293)
T PRK10532         15 LLLLIAMASIQSGASLAKSLFPL----VGAPGVTALRLALGTLILIAIFKPWRL------R--FAK-------EQRLPLL   75 (293)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHH----cCHHHHHHHHHHHHHHHHHHHHhHHhc------c--CCH-------HHHHHHH
Confidence            56666777788899899876432    678899999999987666554422211      0  111       2222455


Q ss_pred             HHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCC
Q 015473          124 VPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGL  203 (406)
Q Consensus       124 vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~~~~~  203 (406)
                      ..++++...+.+.|++++++|++...++..+.|+++++++.    ||.++.+|  +.+.++|+.++..++.+ .+     
T Consensus        76 ~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~~~~--~~i~~~Gv~li~~~~~~-~~-----  143 (293)
T PRK10532         76 FYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVDFVW--VVLAVLGLWFLLPLGQD-VS-----  143 (293)
T ss_pred             HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHHHHH--HHHHHHHHheeeecCCC-cc-----
Confidence            66677888899999999999999999999999999998873    55555554  56678999876432211 11     


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHH-
Q 015473          204 PVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATML-  282 (406)
Q Consensus       204 ~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~l-  282 (406)
                      ..+..|.++.+++++++++..++.||..++.   ++.....+ .+.+.++..+...    .+++.     ..+++..|. 
T Consensus       144 ~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~---~~~~~~~~-~~~~~~~l~~~~~----~~~~~-----~~~~~~~~~~  210 (293)
T PRK10532        144 HVDLTGAALALGAGACWAIYILSGQRAGAEH---GPATVAIG-SLIAALIFVPIGA----LQAGE-----ALWHWSILPL  210 (293)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHhccC---CchHHHHH-HHHHHHHHHHHHH----HccCc-----ccCCHHHHHH
Confidence            1123588999999999999999999986553   33333333 3444443333222    22211     012222332 


Q ss_pred             ----HHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015473          283 ----LIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS  350 (406)
Q Consensus       283 ----~i~~~aigg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~  350 (406)
                          .++...++..+....+++.++...+...++.++++.++|++++||+++..+++|+++|+.|+..+...
T Consensus       211 ~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~  282 (293)
T PRK10532        211 GLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT  282 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence                23333344455567778889999999999999999999999999999999999999999999888654

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.77  E-value=1.4e-16  Score=154.67  Aligned_cols=273  Identities=12%  Similarity=0.085  Sum_probs=169.3

Q ss_pred             HHHHHHHHHHHhhHhHhhh-hcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhH-
Q 015473           43 VFLVVGDCMLVGLQPILVY-MSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNV-  120 (406)
Q Consensus        43 ~ll~~~~~~~~~~~~~l~k-~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~-  120 (406)
                      +++.+...++++..+++.| .+++  +   ++.+  +.....-.++..++...+..+.   +.+..+        ++.+ 
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~--~---~~~~--~~~~~~~~~~l~~~~~~~~~~~---~~~~~~--------~~~~~   64 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADK--E---PDFL--WWALLAHSVLLTPYGLWYLAQV---GWSRLP--------ATFWL   64 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCc--h---hHHH--HHHHHHHHHHHHHHHHHhcccC---CCCCcc--------hhhHH
Confidence            4577788888999999988 4432  1   1222  3333333333333322221111   111111        1112 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCC
Q 015473          121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTA  200 (406)
Q Consensus       121 ~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~~  200 (406)
                      ....-++....++.+.+.++++.|++....+.++.|+++++++++++|||++++||+++.+.++|+.++..++. +.   
T Consensus        65 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~-~~---  140 (281)
T TIGR03340        65 LLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRF-AQ---  140 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccc-cc---
Confidence            34445567889999999999999999999999999999999999999999999999999999999988754321 11   


Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCccccccCChHH
Q 015473          201 MGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFN-FLGILVTAIFKGPDNLDILQGHSKA  279 (406)
Q Consensus       201 ~~~~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~-l~~~~~~~~~~~~~~~~~~~g~~~~  279 (406)
                          ....|..++++++++++++.++.|+..++.   ++.....+...++.++. .+..... ...++.... .....++
T Consensus       141 ----~~~~g~~~~l~aal~~a~~~i~~k~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~  211 (281)
T TIGR03340       141 ----HRRKAYAWALAAALGTAIYSLSDKAAALGV---PAFYSALGYLGIGFLAMGWPFLLLY-LKRHGRSMF-PYARQIL  211 (281)
T ss_pred             ----cchhHHHHHHHHHHHHHHhhhhccccccch---hcccccHHHHHHHHHHHHHHHHHHH-HHHhccchh-hhHHHHH
Confidence                112366678888899999888777654332   11111111111222221 1211111 111111000 0011111


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHH
Q 015473          280 --TMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQ  346 (406)
Q Consensus       280 --~~l~i~~~aigg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~l  346 (406)
                        .+...+..+++..+....+++.+........+++++++.++|++++||+++..+++|+++|+.|+++
T Consensus       212 ~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       212 PSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence              1112233334445555667777776666777789999999999999999999999999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.72  E-value=4.1e-14  Score=135.76  Aligned_cols=269  Identities=19%  Similarity=0.204  Sum_probs=175.0

Q ss_pred             HHHHHHhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhHHHHHHHH
Q 015473           48 GDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAF  127 (406)
Q Consensus        48 ~~~~~~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~vpAl  127 (406)
                      ...+.++......|...++   ..++....+.+.+...++......++.. ..   ++.. .       +..+......+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~-~-------~~~~~~~~~~~   78 (292)
T COG0697          14 LWGLLWGLSFIALKLAVES---LDPFLFAAALRFLIAALLLLPLLLLEPR-GL---RPAL-R-------PWLLLLLLALL   78 (292)
T ss_pred             HHHHHHHHHHHHHHHHhcc---cCChHHHHHHHHHHHHHHHHHHHHhhcc-cc---cccc-c-------chHHHHHHHHH
Confidence            3345566666665544322   2345555566777777662222221110 00   1100 0       01124566667


Q ss_pred             HHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHH-HHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCccc
Q 015473          128 LYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLK-IIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGLPVA  206 (406)
Q Consensus       128 ly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~-l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~~~~~~~~  206 (406)
                      .....+.+.|.++++++++...++.++.|++++++++ +++|||+++++|.++++.++|+.++..++..+..     + .
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~-----~-~  152 (292)
T COG0697          79 GLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGI-----L-S  152 (292)
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchh-----H-H
Confidence            8889999999999999999999999999999999997 7779999999999999999999998655432111     0 2


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHHHH--
Q 015473          207 MGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLI--  284 (406)
Q Consensus       207 ~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~l~i--  284 (406)
                      ..|.++.++++++.+++.++.|+.. +.  .+.. ........+...    ..........   +  ...+...|...  
T Consensus       153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~~--~~~~-~~~~~~~~~~~~----~~~~~~~~~~---~--~~~~~~~~~~~~~  219 (292)
T COG0697         153 LLGLLLALAAALLWALYTALVKRLS-RL--GPVT-LALLLQLLLALL----LLLLFFLSGF---G--APILSRAWLLLLY  219 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-CC--ChHH-HHHHHHHHHHHH----HHHHHHhccc---c--ccCCHHHHHHHHH
Confidence            4688999999999999999999887 31  1211 111011111111    1110011111   0  11122222222  


Q ss_pred             ---HHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015473          285 ---FNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS  350 (406)
Q Consensus       285 ---~~~aigg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~  350 (406)
                         +..+++..+....++..+...........++++.+++++++||.++..+++|.++++.|+.+.+..
T Consensus       220 ~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         220 LGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence               223345555666777788777777778999999999999999999999999999999999988764

>TIGR00688 rarD rarD protein

Probab=99.70  E-value=1.8e-14  Score=137.82  Aligned_cols=247  Identities=11%  Similarity=0.025  Sum_probs=161.4

Q ss_pred             HHHHHHHHHHhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHH--HhhhhhHH
Q 015473           44 FLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFI--QAARNNVL  121 (406)
Q Consensus        44 ll~~~~~~~~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~--~~~r~~~~  121 (406)
                      ++++..++.++.+++..|... +    .+|.++++.|.++..++-..++...++++..  +     +++.  +..+....
T Consensus         5 ~~~i~a~~~wg~~~~~~k~~~-~----~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~   72 (256)
T TIGR00688         5 IVSLLASFLFGYMYYYSKLLK-P----LPATDILGHRMIWSFPFMLLSVTLFRQWAAL--I-----ERLKRIQKRPLILS   72 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc-c----CCHHHHHHHHHHHHHHHHHHHHHHHcchHHH--H-----HHHhCcccchHHHH
Confidence            466777888999999998741 2    6799999999999876544443322211000  0     0000  00011234


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCCC
Q 015473          122 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAM  201 (406)
Q Consensus       122 ~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~~~  201 (406)
                      ....+++..+++.++|++++++|++++.++.++.|+++++++++++|||++++||++++++++|++++..++   ++   
T Consensus        73 ~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~---~~---  146 (256)
T TIGR00688        73 LLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLK---GS---  146 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHc---CC---
Confidence            677888899999999999999999999999999999999999999999999999999999999998874321   11   


Q ss_pred             CCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHH
Q 015473          202 GLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATM  281 (406)
Q Consensus       202 ~~~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~  281 (406)
                       .     . +++++++++++++.++.|+..+++   ..  +.....+...++..+...    ..+............+.+
T Consensus       147 -~-----~-~~~l~aa~~~a~~~i~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  210 (256)
T TIGR00688       147 -L-----P-WEALVLAFSFTAYGLIRKALKNTD---LA--GFCLETLSLMPVAIYYLL----QTDFATVQQTNPFPIWLL  210 (256)
T ss_pred             -c-----h-HHHHHHHHHHHHHHHHHhhcCCCC---cc--hHHHHHHHHHHHHHHHHH----HhccCcccccCchhHHHH
Confidence             1     1 346778888999998888864321   11  111111111222111111    111110000111112222


Q ss_pred             HH--HHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHH
Q 015473          282 LL--IFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVL  324 (406)
Q Consensus       282 l~--i~~~aigg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~ll  324 (406)
                      +.  .+..+++..+....+|+.++...+...++.|+++.++++++
T Consensus       211 l~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       211 LVLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            22  12345666778888899999999999999999999999764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.61  E-value=1.6e-16  Score=148.14  Aligned_cols=218  Identities=13%  Similarity=0.132  Sum_probs=152.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCC-----C
Q 015473          122 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLP-----E  196 (406)
Q Consensus       122 ~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~-----~  196 (406)
                      +.+++++.+....+.|+|++|++.+.+.++..+.|.+|.+|++.+|||++|...-++..+.+.||+++.-++.-     +
T Consensus       100 LiLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~  179 (346)
T KOG4510|consen  100 LILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTE  179 (346)
T ss_pred             EEeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCcc
Confidence            44556666677789999999999999999999999999999999999999999999999999999998665531     1


Q ss_pred             CCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccC
Q 015473          197 GSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKS-QYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQG  275 (406)
Q Consensus       197 ~~~~~~~~~~~~G~ll~L~a~~~sala~V~~ekllk~-~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~g  275 (406)
                      +.+..+..-...|....+.+++..+-..+..|++.|+ +...+.+    +....+.+.+++....-.-++-|.     .+
T Consensus       180 g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h~~msvs----yf~~i~lV~s~I~~~~ig~~~lP~-----cg  250 (346)
T KOG4510|consen  180 GEDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNAHAIMSVS----YFSLITLVVSLIGCASIGAVQLPH-----CG  250 (346)
T ss_pred             ccccccccccCCchHHHHHhHhhhhhHHHHHHHhhccccEEEEeh----HHHHHHHHHHHHHHhhccceecCc-----cc
Confidence            1111111111235566777777777777778998886 2223433    444555555554433110111110     12


Q ss_pred             ChHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhc
Q 015473          276 HSKATMLLI-FNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFF  348 (406)
Q Consensus       276 ~~~~~~l~i-~~~aigg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~  348 (406)
                      -+++....+ +..-+|+++++..++.-.+--.+..+++.++++.+..+++|||.||++.++|+++|+.+.....
T Consensus       251 kdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a  324 (346)
T KOG4510|consen  251 KDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVA  324 (346)
T ss_pred             cceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHH
Confidence            222222112 3445677888877766544455688889999999999999999999999999999999876543

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.50  E-value=5.1e-11  Score=113.45  Aligned_cols=271  Identities=17%  Similarity=0.261  Sum_probs=180.4

Q ss_pred             HHHHHHHHHHhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhHHHH
Q 015473           44 FLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLA  123 (406)
Q Consensus        44 ll~~~~~~~~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~  123 (406)
                      ++.+.+++.+|..+...|+.+.     .++.++.--|-+-...+.+..+...++.+        ..+...+.+|....+.
T Consensus        10 l~~l~Ay~lwG~lp~y~kll~~-----~~~~eIlahRviwS~~~~l~ll~~~r~~~--------~~~~~~~~p~~~~~~~   76 (293)
T COG2962          10 LLALLAYLLWGLLPLYFKLLEP-----LPATEILAHRVIWSFPFMLALLFLLRQWR--------ELKQLLKQPKTLLMLA   76 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHHHHHHHHHHHHhhhH--------HHHHHHhCcHHHHHHH
Confidence            3556677788888888887733     55777777777777777766655443311        0122333445555677


Q ss_pred             HHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCC
Q 015473          124 VPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGL  203 (406)
Q Consensus       124 vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~~~~~  203 (406)
                      +-+++-..|-.++.+|..+=..-+.++-+...|++..++..++||||+|+.||+|+.+..+||.......   +    +.
T Consensus        77 l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~---g----~l  149 (293)
T COG2962          77 LTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL---G----SL  149 (293)
T ss_pred             HHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc---C----CC
Confidence            7778888888888899999999999999999999999999999999999999999999999998865432   1    12


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccc-CChHHHHH
Q 015473          204 PVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQ-GHSKATML  282 (406)
Q Consensus       204 ~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~-g~~~~~~l  282 (406)
                      |  +..    +.-++..++++. .||.+|-+...+....++++...    .+..+..   .+....  +.. +.+...++
T Consensus       150 p--wva----l~la~sf~~Ygl-~RK~~~v~a~~g~~lE~l~l~p~----al~yl~~---l~~~~~--~~~~~~~~~~~L  213 (293)
T COG2962         150 P--WVA----LALALSFGLYGL-LRKKLKVDALTGLTLETLLLLPV----ALIYLLF---LADSGQ--FLQQNANSLWLL  213 (293)
T ss_pred             c--HHH----HHHHHHHHHHHH-HHHhcCCchHHhHHHHHHHHhHH----HHHHHHH---HhcCch--hhhcCCchHHHH
Confidence            2  222    222345677664 56666653223333444443222    2222221   222211  122 22212222


Q ss_pred             HHHHHHHHH---HHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015473          283 LIFNNAAQG---ILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS  350 (406)
Q Consensus       283 ~i~~~aigg---~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~  350 (406)
                      .+....+.+   ++.+..-|..+=.+-++.++.++.+--+++++++||+++..+.+..+.+-.|..+|...
T Consensus       214 Lv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d  284 (293)
T COG2962         214 LVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSID  284 (293)
T ss_pred             HHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            332222222   23333346666677789999999999999999999999999999999999999998864

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=99.49  E-value=3.4e-14  Score=133.28  Aligned_cols=230  Identities=15%  Similarity=0.186  Sum_probs=158.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 015473          121 LLAVPAFLYAINNYLKFIMQLY-FNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGST  199 (406)
Q Consensus       121 ~~~vpAlly~~~n~L~f~al~~-l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~  199 (406)
                      .|++.-.++.+.|.+..+++.+ +|.+...+.++-.++.+++++++++|||+|.+|+.+++++++|+++..+.+..++..
T Consensus        66 ~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~  145 (330)
T KOG1583|consen   66 DYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS  145 (330)
T ss_pred             hhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh
Confidence            4777777888899999999998 899999999999999999999999999999999999999999999876544322111


Q ss_pred             -------C---CCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHH--------
Q 015473          200 -------A---MGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVT--------  261 (406)
Q Consensus       200 -------~---~~~~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~--------  261 (406)
                             .   ........|+.+...+.+.+|..++|+|..+|++.++  |..+++   +.-.+++|..+..        
T Consensus       146 ~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh--~~EalF---ytH~LsLP~Flf~~~div~~~  220 (330)
T KOG1583|consen  146 KLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKH--WKEALF---YTHFLSLPLFLFMGDDIVSHW  220 (330)
T ss_pred             hhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--hHHHHH---HHHHhccchHHHhcchHHHHH
Confidence                   0   0111123577777788999999999999999987433  333433   3445555554421        


Q ss_pred             -HHhcCCC-ccccccCChHHHHHHHHHHHHHH-HHHHHHHHH---hhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHH
Q 015473          262 -AIFKGPD-NLDILQGHSKATMLLIFNNAAQG-ILSCFFLKY---ADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLL  335 (406)
Q Consensus       262 -~~~~~~~-~~~~~~g~~~~~~l~i~~~aigg-~~v~~~~ky---~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~l  335 (406)
                       ..+.++. ..+.+...-+..|..++.+.+.+ .++..++-.   .++.+.....+++..++.++|+++|.++++++.|+
T Consensus       221 ~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~l  300 (330)
T KOG1583|consen  221 RLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWL  300 (330)
T ss_pred             HHHhcCcceeccccCccccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHH
Confidence             0112221 00111111123454444444444 333333321   23333444455778899999999999999999999


Q ss_pred             HHHHHHHHHHHhcccccccc
Q 015473          336 GISIVFISMHQFFSSLSKAK  355 (406)
Q Consensus       336 G~~LVi~gv~ly~~~~~~~k  355 (406)
                      |+++|+.|..+|...-+++|
T Consensus       301 Ga~lVF~Gt~~fa~~~~~~~  320 (330)
T KOG1583|consen  301 GAALVFFGTLLFANVWNHPK  320 (330)
T ss_pred             HHHHHHHHHHHHHHHHcCcc
Confidence            99999999999987666655

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.48  E-value=1.4e-12  Score=122.09  Aligned_cols=281  Identities=16%  Similarity=0.153  Sum_probs=190.9

Q ss_pred             HHHHHHHHHHHhhHhHhhhhcccCCcccchHH--HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhH
Q 015473           43 VFLVVGDCMLVGLQPILVYMSKVDGRFKFSPI--SVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNV  120 (406)
Q Consensus        43 ~ll~~~~~~~~~~~~~l~k~s~~~g~~~~~~~--~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~  120 (406)
                      ++|..+..+.|...+.+.++-.+..+  +.|.  ...+.+-++=..+.++    +.+-... .+...+.       |   
T Consensus        45 lic~~g~Ff~Yl~yGy~qElif~~~g--fkp~GWylTlvQf~~Ysg~gli----e~~~~~~-k~r~iP~-------r---  107 (367)
T KOG1582|consen   45 LICSAGVFFLYLVYGYLQELIFNVEG--FKPFGWYLTLVQFLVYSGFGLI----ELQLIQT-KRRVIPW-------R---  107 (367)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHhcccc--CcccchHHHHHHHHHHHhhhhe----EEEeecc-cceecch-------h---
Confidence            56778888888888888876553222  2222  1223332222111111    1110000 0111111       1   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCC
Q 015473          121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTA  200 (406)
Q Consensus       121 ~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~~  200 (406)
                      .+.+.|.+-.....|..-++.|++.++..+.+++|.+.+++.+.++=|+|+.+..+.|..++.+|.+...+.+....+  
T Consensus       108 tY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sP--  185 (367)
T KOG1582|consen  108 TYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSP--  185 (367)
T ss_pred             HhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCC--
Confidence            478888888899999999999999999999999999999999999999999999999999999999999876642211  


Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--ccccccCChH
Q 015473          201 MGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPD--NLDILQGHSK  278 (406)
Q Consensus       201 ~~~~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~--~~~~~~g~~~  278 (406)
                         ..+..|++++-.+-+++|+-+=.+||.+|.++..+ ....++-+..|.++.+..+.    ..|+-  .+.++..+++
T Consensus       186 ---NF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss-~EmvfySy~iG~vflf~~mv----lTge~f~a~~fcaehp~  257 (367)
T KOG1582|consen  186 ---NFNLIGVMMISGALLADAVIGNVQEKAMKMNPASS-SEMVFYSYGIGFVFLFAPMV----LTGELFSAWTFCAEHPV  257 (367)
T ss_pred             ---CcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCc-ceEEEeeecccHHHHHHHHH----hcccchhhhHHHHhCcH
Confidence               23446877777777888988888999999753333 22222334444444443333    34442  2344555555


Q ss_pred             HHHHHHHHHH----HHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015473          279 ATMLLIFNNA----AQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS  350 (406)
Q Consensus       279 ~~~l~i~~~a----igg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~  350 (406)
                      .++...+.-+    +|...+-..+|..++.+....++.+.-.++++|+++|..++|.+..-|..+|+.|+++-..+
T Consensus       258 ~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ys  333 (367)
T KOG1582|consen  258 RTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYS  333 (367)
T ss_pred             hHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhccc
Confidence            4554433322    23334445568788888888888999999999999999999999999999999999986654

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=99.46  E-value=5e-13  Score=130.67  Aligned_cols=223  Identities=13%  Similarity=0.203  Sum_probs=159.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCC
Q 015473          121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTA  200 (406)
Q Consensus       121 ~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~~  200 (406)
                      .....++.+++...+...++++.|.+.+|+++.+.|+++.++++++.+|++++.-|++++....||.+....+       
T Consensus        85 ~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e-------  157 (316)
T KOG1441|consen   85 TLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTE-------  157 (316)
T ss_pred             HHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeecc-------
Confidence            5777889999999999999999999999999999999999999999999999999999999999998875522       


Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcchHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCccc-cccCCh
Q 015473          201 MGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQ-YDTSIYLQNLFLYGYGAIFNF-LGILVTAIFKGPDNLD-ILQGHS  277 (406)
Q Consensus       201 ~~~~~~~~G~ll~L~a~~~sala~V~~ekllk~~-~~~s~~~~~~~l~~~g~l~~l-~~~~~~~~~~~~~~~~-~~~g~~  277 (406)
                        ...+..|.+..+.+.+..++..++.+++++++ .+.+...-..++...+.++.+ |...   ..+++...+ ....++
T Consensus       158 --~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~---~~~~~~~~~~~~~~~~  232 (316)
T KOG1441|consen  158 --LSFNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLD---YVEGNKFVGFLTAPWF  232 (316)
T ss_pred             --ccccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHh---hhcccceeeeeccccc
Confidence              12456798999999999999999999999642 122222111222233333333 2211   123332100 112333


Q ss_pred             HHHHHHHHHHH---HHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccccccc
Q 015473          278 KATMLLIFNNA---AQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKA  354 (406)
Q Consensus       278 ~~~~l~i~~~a---igg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~~~~~  354 (406)
                      ...+..++++.   ..++....++.+.++++-..+..+..++.++.|+++|+++.|+...+|+++.+.|+++|++...++
T Consensus       233 ~~~~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~  312 (316)
T KOG1441|consen  233 VTFLILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKE  312 (316)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhh
Confidence            33333333321   123444556666777777777777777888999999999999999999999999999999964443


Q ss_pred             c
Q 015473          355 K  355 (406)
Q Consensus       355 k  355 (406)
                      |
T Consensus       313 ~  313 (316)
T KOG1441|consen  313 K  313 (316)
T ss_pred             h
Confidence            3

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.40  E-value=2.2e-11  Score=118.92  Aligned_cols=228  Identities=13%  Similarity=0.159  Sum_probs=158.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCC
Q 015473          121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTA  200 (406)
Q Consensus       121 ~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~~  200 (406)
                      ....-+.+.++.|.....||.+++.+..++++++.=+||..++.++.+||+++.+.+++++.+.||+++...+..++++.
T Consensus       161 ~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~  240 (416)
T KOG2765|consen  161 LSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDL  240 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccC
Confidence            35556678889999999999999999999999999999999999999999999999999999999999977654332211


Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHH
Q 015473          201 MGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQ-YDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKA  279 (406)
Q Consensus       201 ~~~~~~~~G~ll~L~a~~~sala~V~~ekllk~~-~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~g~~~~  279 (406)
                      . ......|.++.+++++..|++.+..+|-..++ .+.++.+.--+.+++..++.-|.+.+-..+ +.+   -|.-++..
T Consensus       241 ~-a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~-~~e---~F~lP~~~  315 (416)
T KOG2765|consen  241 P-ASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFF-GEE---RFELPSST  315 (416)
T ss_pred             C-ccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHh-ccC---cccCCCCc
Confidence            1 11135788999999998888887776644433 233332222222333333333222211112 221   23333322


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-----hhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcccccc
Q 015473          280 TMLLIFNNAAQGILSCFFLKY-----ADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSK  353 (406)
Q Consensus       280 ~~l~i~~~aigg~~v~~~~ky-----~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~~~~  353 (406)
                      ....++..++.|.+++=.+|.     .++.+...+.++++.++++...++=|.++++.+++|.+.|+.|-++.+.+.+.
T Consensus       316 q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~  394 (416)
T KOG2765|consen  316 QFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSEN  394 (416)
T ss_pred             eeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccc
Confidence            222333444556656633332     35666666677888999999999999999999999999999999998886555

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=99.39  E-value=5.7e-11  Score=113.32  Aligned_cols=262  Identities=18%  Similarity=0.183  Sum_probs=175.5

Q ss_pred             CCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccCh
Q 015473           66 DGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNP  145 (406)
Q Consensus        66 ~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~  145 (406)
                      ++.+.|+- -++-+..++|++.+........... +..|..+++   .+..|   +.+..|+.-++.-.+..++++|++.
T Consensus        39 ~~~f~fPL-f~ts~h~~v~flfa~~~~~l~~~~~-~r~r~~~sw---~~~Lr---~~aPtalata~DIGLSN~sl~yVtl  110 (349)
T KOG1443|consen   39 TKNFHFPL-FVTSLHLAVKFLFAALSRRLYQCSV-PRARVVLSW---RDYLR---RLAPTALATALDIGLSNWSLEYVTL  110 (349)
T ss_pred             hcCcCCch-HHHHHHHHHHHHHHHHHHHHHhccC-CccccCCcH---HHHHH---Hhhhhhhhhhcccccccceeeeeee
Confidence            34455554 4667889999988866543322211 101222322   22222   4667778888999999999999999


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHH
Q 015473          146 ATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASV  225 (406)
Q Consensus       146 ~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~~~~~~~~~~G~ll~L~a~~~sala~V  225 (406)
                      +.|.+.++..++|+.+|+.++-=||.++.=...+++..+|+.+...++.         +.+..|..+++++++++|+...
T Consensus       111 SlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsT---------qf~i~Gf~lv~~aS~~sGlRW~  181 (349)
T KOG1443|consen  111 SLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKST---------QFNIEGFFLVLAASLLSGLRWA  181 (349)
T ss_pred             eeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEeccc---------ceeehhHHHHHHHHHhhhhhHH
Confidence            9999999999999999999999999999999999999999998877653         2344688999999999999999


Q ss_pred             HHHHHhhhcC--CcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---cccc--cCChHHHHHHHHHHHHHHHHHHHHH
Q 015473          226 FNEYALKSQY--DTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDN---LDIL--QGHSKATMLLIFNNAAQGILSCFFL  298 (406)
Q Consensus       226 ~~ekllk~~~--~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~---~~~~--~g~~~~~~l~i~~~aigg~~v~~~~  298 (406)
                      +.++++++++  ..+|.....++.-+..+..+|.   ...+||+..   ...|  ++.. ..+..+...++||.+ ++.+
T Consensus       182 ~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~---~l~fEG~~~~~~s~~f~~~d~~-~~~rv~g~i~l~g~l-aF~l  256 (349)
T KOG1443|consen  182 FTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPL---SLLFEGLHLITSSSIFRFQDTG-LILRVIGLISLGGLL-AFLL  256 (349)
T ss_pred             HHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHH---HHHHcccccchhhhHHHhcCcc-HHHHHHHHHHHHHHH-HHHH
Confidence            9999998752  2333333333332222222222   224677631   1222  2222 233344444555543 2333


Q ss_pred             HH--------hhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcc
Q 015473          299 KY--------ADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFS  349 (406)
Q Consensus       299 ky--------~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~  349 (406)
                      -.        .+.+..+.+....-+.+.+++..+.++.++..-++|..+...|+..|..
T Consensus       257 ~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~  315 (349)
T KOG1443|consen  257 EFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRN  315 (349)
T ss_pred             HHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcc
Confidence            22        2333334444445578889999999999999999999999999999844

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.37  E-value=5.4e-10  Score=109.18  Aligned_cols=267  Identities=14%  Similarity=0.084  Sum_probs=167.0

Q ss_pred             HHHHHHHHHHHhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhHH-
Q 015473           43 VFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVL-  121 (406)
Q Consensus        43 ~ll~~~~~~~~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~~-  121 (406)
                      ++++...+++|+++++..|..+  |   .++...+  +-.+..++...+....+...    +..          ++.+. 
T Consensus         3 ~l~~lia~~~wGs~g~~~k~~~--g---~~~~~~~--~~~~g~l~~~~~~~~~~~~~----~~~----------~~~~~~   61 (290)
T TIGR00776         3 ILIALIPALFWGSFVLINVKIG--G---GPYSQTL--GTTFGALILSIAIAIFVLPE----FWA----------LSIFLV   61 (290)
T ss_pred             hHHHHHHHHHHhhhHHHHhccC--C---CHHHHHH--HHHHHHHHHHHHHHHHhCCc----ccc----------cHHHHH
Confidence            4566778888999999988664  2   2233333  22222222222211111100    100          11122 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccChHHHHHHhh-hHHHHHHHHHHHHhCCCCCHHH----HHHHHHHHHHHhhhccCCCCC
Q 015473          122 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSN-LKVLVIAVLLKIIMRRRFSIIQ----WEALALLLIGISVNQLRSLPE  196 (406)
Q Consensus       122 ~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~-~k~l~talls~l~Lkerls~~q----wlal~ll~~GV~lv~~~~~~~  196 (406)
                      -.+.+++..+.|.++|.+.+++..++...+.+ +.+++.++++.+++|||.++++    ++|+++.++|+.++...+.++
T Consensus        62 g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~  141 (290)
T TIGR00776        62 GLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKS  141 (290)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccc
Confidence            33444668999999999999999999999999 9999999999999999999999    999999999998875543211


Q ss_pred             CCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHH----HHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Q 015473          197 GSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYL----QNLFLYGYGAIFNFLGILVTAIFKGPDNLDI  272 (406)
Q Consensus       197 ~~~~~~~~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~----~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~  272 (406)
                      .. .........|++++++++++.+++.+..|+. + +   +++.    +..-+.+.+++++.+.     ....+     
T Consensus       142 ~~-~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~-~-~---~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~-----  205 (290)
T TIGR00776       142 AG-IKSEFNFKKGILLLLMSTIGYLVYVVVAKAF-G-V---DGLSVLLPQAIGMVIGGIIFNLGH-----ILAKP-----  205 (290)
T ss_pred             cc-cccccchhhHHHHHHHHHHHHHHHHHHHHHc-C-C---CcceehhHHHHHHHHHHHHHHHHH-----hcccc-----
Confidence            11 0000111348899999999999988888865 2 2   2222    2222222333333221     00111     


Q ss_pred             ccCChHHHHHHHH---HHHHHHHHHHHHHH-HhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHH----HHHHHHHHHH
Q 015473          273 LQGHSKATMLLIF---NNAAQGILSCFFLK-YADAILKKYSSTVATIFTGIASAVLFGHTLTMNFL----LGISIVFISM  344 (406)
Q Consensus       273 ~~g~~~~~~l~i~---~~aigg~~v~~~~k-y~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~----lG~~LVi~gv  344 (406)
                      +  .+...|..++   ..+++..+.....+ +.+........+..++.+++.+++++||..+..++    +|.++++.|+
T Consensus       206 ~--~~~~~~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~  283 (290)
T TIGR00776       206 L--KKYAILLNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAA  283 (290)
T ss_pred             h--HHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHH
Confidence            1  1112222221   12233333323334 66666666777788999999999999999999999    9999999998


Q ss_pred             HHhc
Q 015473          345 HQFF  348 (406)
Q Consensus       345 ~ly~  348 (406)
                      .+-.
T Consensus       284 ~l~~  287 (290)
T TIGR00776       284 NILG  287 (290)
T ss_pred             HHHh
Confidence            7643

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.30  E-value=6.3e-10  Score=107.30  Aligned_cols=225  Identities=11%  Similarity=0.131  Sum_probs=151.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCC
Q 015473          118 NNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEG  197 (406)
Q Consensus       118 ~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~  197 (406)
                      ...++..++++|.+.-.-.-.+++|++.+++.++++..|+.||+.-.+++|.|.++.-|.++.+..+|.......+.   
T Consensus        76 ~~kk~~P~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~---  152 (314)
T KOG1444|consen   76 TAKKWFPVSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDL---  152 (314)
T ss_pred             HHHHHccHHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccc---
Confidence            34468888899998888888999999999999999999999999999999999999999999999999877644331   


Q ss_pred             CCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-c-cccc-
Q 015473          198 STAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDN-L-DILQ-  274 (406)
Q Consensus       198 ~~~~~~~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~-~-~~~~-  274 (406)
                            ..+..|+.+.+..++..+...+|.|+..+.. +.+.+-...+-.+++.+......    ...|+.. . .-+. 
T Consensus       153 ------sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~-~l~~~~lv~yNnl~~L~~l~~~~----~~~ge~~~l~~~~~~  221 (314)
T KOG1444|consen  153 ------SFNLRGYSWALANCLTTAAFVVYVKKSVDSA-NLNKFGLVFYNNLLSLPPLLILS----FITGELDALSLNFDN  221 (314)
T ss_pred             ------eecchhHHHHHHHHHHHHHHHHHHHHhhccc-cccceeEEeehhHHHHHHHHHHH----HHhcchHHHHhhccc
Confidence                  1223488999999999999999999987753 22223222232333333322221    1222210 0 0011 


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHH----HHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015473          275 GHSKATMLLIFNNAAQGILSCFFL----KYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS  350 (406)
Q Consensus       275 g~~~~~~l~i~~~aigg~~v~~~~----ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~  350 (406)
                      ......|..+....+.|..+++..    +.-++..-..........+.+...+++|.+.++.-++|..+-+.|..+|+..
T Consensus       222 ~~~~~~~~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~  301 (314)
T KOG1444|consen  222 WSDSSVLVVMLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYA  301 (314)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhh
Confidence            111234555556666666555443    3233332222222344566667777778999999999999999999999985


Q ss_pred             cccccc
Q 015473          351 LSKAKD  356 (406)
Q Consensus       351 ~~~~k~  356 (406)
                      ..++|+
T Consensus       302 ~~~~k~  307 (314)
T KOG1444|consen  302 TFRKKK  307 (314)
T ss_pred             hhhhcc
Confidence            444433

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=99.17  E-value=6.7e-12  Score=116.76  Aligned_cols=215  Identities=15%  Similarity=0.219  Sum_probs=154.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCCC
Q 015473          122 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAM  201 (406)
Q Consensus       122 ~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~~~  201 (406)
                      +.+.|+...-.|.+.-.|.||++....+++-.-.++.+.+++|++||.|+.+.|..++++...|+.++...+...++...
T Consensus        81 Yilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~ag  160 (336)
T KOG2766|consen   81 YILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAG  160 (336)
T ss_pred             hhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccC
Confidence            88889999999999999999999999999999999999999999999999999999999999999887665543333222


Q ss_pred             CCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHH
Q 015473          202 GLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATM  281 (406)
Q Consensus       202 ~~~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~  281 (406)
                      |.+ +..|..++++++.+.|..++..|.+.|+   .+....+-+++++|.+++.+-+.    .+...  -.--+|++...
T Consensus       161 gsn-p~~GD~lvi~GATlYaVSNv~EEflvkn---~d~~elm~~lgLfGaIIsaIQ~i----~~~~~--~~tl~w~~~i~  230 (336)
T KOG2766|consen  161 GSN-PVKGDFLVIAGATLYAVSNVSEEFLVKN---ADRVELMGFLGLFGAIISAIQFI----FERHH--VSTLHWDSAIF  230 (336)
T ss_pred             CCC-CccCcEEEEecceeeeeccccHHHHHhc---CcHHHHHHHHHHHHHHHHHHHHh----hhccc--eeeEeehHHHH
Confidence            222 2357788899999999999999999887   35566677889999998876633    22221  00112332211


Q ss_pred             HHH---HHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhc
Q 015473          282 LLI---FNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFF  348 (406)
Q Consensus       282 l~i---~~~aigg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~  348 (406)
                      ..+   +..-+...++...+|..++..-+....++-.++.++  ..||-+.+|..++..+.+..|.++|.
T Consensus       231 ~yl~f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs  298 (336)
T KOG2766|consen  231 LYLRFALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYS  298 (336)
T ss_pred             HHHHHHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEee
Confidence            111   111111223333344444443344444555666666  77899999999999999999999993

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.05  E-value=1.2e-10  Score=109.62  Aligned_cols=267  Identities=11%  Similarity=0.158  Sum_probs=184.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCc--chhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHH
Q 015473           73 PISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPL--LSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKM  150 (406)
Q Consensus        73 ~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~--l~~~~~~~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~v  150 (406)
                      |.-+.+.+.++-..+|..+-.....-......|-  ++.++    .|+.+++.   +.+.+.-....+.++|.+.+.|++
T Consensus        61 plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t----~r~vlpls---vVfi~mI~fnnlcL~yVgVaFYyv  133 (347)
T KOG1442|consen   61 PLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLAT----ARQVLPLS---VVFILMISFNNLCLKYVGVAFYYV  133 (347)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHH----HHhhcchh---heeeeehhccceehhhcceEEEEe
Confidence            3445678888888777765332211000001111  22222    23333333   333333333445799999999999


Q ss_pred             HhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Q 015473          151 LSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYA  230 (406)
Q Consensus       151 l~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~~~~~~~~~~G~ll~L~a~~~sala~V~~ekl  230 (406)
                      -+++..+|+.++++++||+|-+..-..+..+.+.|--+-   .+.|+.   ..+.++.|.+++..++++-|+-++|++|.
T Consensus       134 gRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lG---vdqE~~---~~~ls~~GvifGVlaSl~vAlnaiytkk~  207 (347)
T KOG1442|consen  134 GRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLG---VDQEGS---TGTLSWIGVIFGVLASLAVALNAIYTKKV  207 (347)
T ss_pred             ccchhhhHHHHhHHhhcccccccccceeehhheehheec---cccccc---cCccchhhhHHHHHHHHHHHHHHHhhhee
Confidence            999999999999999999999988777766666655331   122222   12345679999999999999999999987


Q ss_pred             hhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-c-cccccCChHHHHHHHHHHHHHHHHHHHHH----HHhhhH
Q 015473          231 LKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPD-N-LDILQGHSKATMLLIFNNAAQGILSCFFL----KYADAI  304 (406)
Q Consensus       231 lk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~-~-~~~~~g~~~~~~l~i~~~aigg~~v~~~~----ky~~~i  304 (406)
                      +..- +..+|...++.+.++.++.+|.+.+    .|+- + .++-+-+.++.|.+....++.|..++++.    |..++.
T Consensus       208 l~~v-~~~iw~lt~ynnv~a~lLflpll~l----nge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg~QIK~TSpl  282 (347)
T KOG1442|consen  208 LPPV-GDCIWRLTAYNNVNALLLFLPLLIL----NGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVTGWQIKVTSPL  282 (347)
T ss_pred             cccc-cCeehhhHHHHHHHHHHHHHHHHHH----cchHHHHcCcccchHHHHHHHHHHHHHHHHHhhheeeEEEEecccc
Confidence            6543 5688999999999999988887654    2321 1 12223446678888888888888777665    556677


Q ss_pred             HHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcccccccccc
Q 015473          305 LKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDE  357 (406)
Q Consensus       305 ~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~~~~~k~~  357 (406)
                      +.+...+..-..-+++++.+.+|.-+..-|-|-.+|+.|...|+...+..+++
T Consensus       283 ThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~  335 (347)
T KOG1442|consen  283 THNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRK  335 (347)
T ss_pred             eeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHh
Confidence            77777767777788899999999999999999999999999999865554443

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.91  E-value=5.4e-08  Score=85.30  Aligned_cols=138  Identities=14%  Similarity=0.204  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhc----CCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc----cccc-CC--h
Q 015473          209 AYIYTLIFITVPSMASVFNEYALKSQ----YDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNL----DILQ-GH--S  277 (406)
Q Consensus       209 G~ll~L~a~~~sala~V~~ekllk~~----~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~----~~~~-g~--~  277 (406)
                      |.++++.++++.|+..++.|+++++.    .+.+......+++..+.++.++..+.   .|++...    .... ..  +
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~---~e~~~~~~~~~~~~~~~~~~~   77 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFL---LEGPQLSSFFSEIFGEELSSD   77 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHH---HhhhhhhhHHHHhhhhhhcch
Confidence            46788999999999999999999873    34566656666667777766665443   3443211    0111 00  2


Q ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcc
Q 015473          278 KATMLLIFNNAA----QGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFS  349 (406)
Q Consensus       278 ~~~~l~i~~~ai----gg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~  349 (406)
                      ...+..++..++    .......++++.+++.......+..++.+++|+++|||++|...++|.++.+.|+++|++
T Consensus        78 ~~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen   78 PNFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence            233333333333    334555777999999999999999999999999999999999999999999999999974

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>COG2510 Predicted membrane protein [Function unknown]

Probab=98.83  E-value=3.6e-08  Score=83.04  Aligned_cols=133  Identities=18%  Similarity=0.309  Sum_probs=103.7

Q ss_pred             HHHHHHHHHhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhHHHHH
Q 015473           45 LVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAV  124 (406)
Q Consensus        45 l~~~~~~~~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~v  124 (406)
                      +.+.+++.+++-+++.|.--++    .+|....+.|.++-++++..+....++.+..++-.          .|......+
T Consensus         7 ~ALLsA~fa~L~~iF~KIGl~~----vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~----------~k~~lflil   72 (140)
T COG2510           7 YALLSALFAGLTPIFAKIGLEG----VDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIG----------PKSWLFLIL   72 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHhccc----cCccHHHHHHHHHHHHHHHHHHHhcCceecccccC----------cceehhhhH
Confidence            3444566677777777753232    45677788999999999998888877655443211          123234455


Q ss_pred             HHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcc
Q 015473          125 PAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQL  191 (406)
Q Consensus       125 pAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~  191 (406)
                      -++.-.+.-.++|.|++.=+++...-+.++.|++++++++++||||+|..+|+++.+..+|++++..
T Consensus        73 SGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~  139 (140)
T COG2510          73 SGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL  139 (140)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence            5577779999999999999999999999999999999999999999999999999999999988753

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=98.83  E-value=2.1e-07  Score=85.48  Aligned_cols=231  Identities=12%  Similarity=0.130  Sum_probs=144.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 015473          120 VLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGST  199 (406)
Q Consensus       120 ~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~  199 (406)
                      ..+..|+++.+.--+-.--+++|++.+.|.+.+++.++.+|..-++++|.|++.....+-++..+.-.+....+.+....
T Consensus        69 K~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~  148 (309)
T COG5070          69 KKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAF  148 (309)
T ss_pred             hhhcCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHH
Confidence            35666776665554455568999999999999999999999999999999999999999988888777665443211100


Q ss_pred             -CCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChH
Q 015473          200 -AMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSK  278 (406)
Q Consensus       200 -~~~~~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~g~~~  278 (406)
                       ...+.   .|++++...|+.++..-...|+..|-. +..-+..+++-.+.+.++.+..   +...|+-++.+.-.+.+.
T Consensus       149 ~~~~lN---~GY~Wm~~NclssaafVL~mrkri~lt-Nf~d~dtmfYnNllslPiL~~~---s~~~edws~~n~annl~~  221 (309)
T COG5070         149 KAQILN---PGYLWMFTNCLSSAAFVLIMRKRIKLT-NFKDFDTMFYNNLLSLPILLSF---SFLFEDWSPGNLANNLSV  221 (309)
T ss_pred             HhcccC---CceEEEehhhHhHHHHHHHHHHhhccc-ccchhhHHHHhhhHHHHHHHHH---HHHhccCCcchhhcCCCh
Confidence             00111   377888888877775555555554421 1111223333344444433222   223443322223344443


Q ss_pred             HHHHHHHHHHHHHH----HHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccccccc
Q 015473          279 ATMLLIFNNAAQGI----LSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKA  354 (406)
Q Consensus       279 ~~~l~i~~~aigg~----~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~~~~~  354 (406)
                      -....++..++...    +.+++++-.++..-....++...-..+.|.++||++.+...+..+.+-+.+..+|.....+|
T Consensus       222 d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k  301 (309)
T COG5070         222 DSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKK  301 (309)
T ss_pred             HHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33222222333332    33344454555555555555666778899999999999999999999999999998755554


Q ss_pred             ccc
Q 015473          355 KDE  357 (406)
Q Consensus       355 k~~  357 (406)
                      ++.
T Consensus       302 ~q~  304 (309)
T COG5070         302 QQN  304 (309)
T ss_pred             Hhc
Confidence            443

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.81  E-value=1.6e-07  Score=78.79  Aligned_cols=71  Identities=25%  Similarity=0.371  Sum_probs=62.9

Q ss_pred             HHHHHHH-HHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCC
Q 015473          123 AVPAFLY-AINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSL  194 (406)
Q Consensus       123 ~vpAlly-~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~  194 (406)
                      ..-+++. ..++.++++|+++.| +...++.++.|+++++++++++|||+++++|.++++.++|++++..++.
T Consensus        38 ~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~  109 (113)
T PF13536_consen   38 ILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL  109 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence            3335555 489999999999999 5888999999999999999999999999999999999999999876553

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=98.77  E-value=7.5e-08  Score=80.56  Aligned_cols=121  Identities=21%  Similarity=0.283  Sum_probs=90.0

Q ss_pred             HhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhHHHHHHHHH-HHH
Q 015473           53 VGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFL-YAI  131 (406)
Q Consensus        53 ~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~vpAll-y~~  131 (406)
                      ++...++.|..-++    +++...++.+.+...+ ...+.....+...    +..+       .++.......+.+ ..+
T Consensus         3 ~a~~~~~~k~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~-------~~~~~~~~~~~~~~~~~   66 (126)
T PF00892_consen    3 WAIYSVFSKKLLKK----ISPLSITFWRFLIAGI-LLILLLILGRKPF----KNLS-------PRQWLWLLFLGLLGTAL   66 (126)
T ss_pred             eeeHHHHHHHHhcc----CCHHHHHHHHHHHHHH-HHHHHHhhccccc----cCCC-------hhhhhhhhHhhccceeh
Confidence            44445555544222    5688889999999886 4444333332110    1111       1233346666666 589


Q ss_pred             HHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhh
Q 015473          132 NNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVN  189 (406)
Q Consensus       132 ~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv  189 (406)
                      .+.+.+.++++.+++..+++.++.|+++++++++++||+++++||.++++.++|+.++
T Consensus        67 ~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~  124 (126)
T PF00892_consen   67 AYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI  124 (126)
T ss_pred             HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999876

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=98.69  E-value=4.1e-05  Score=72.02  Aligned_cols=205  Identities=17%  Similarity=0.061  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCC
Q 015473          121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTA  200 (406)
Q Consensus       121 ~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~~  200 (406)
                      ...+=+.....-|.++|.+++.+|.++...+-.+-|+.+++++    .||..---|+++.+  .|+.+..-.+.  +   
T Consensus        73 ~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~----sRr~~d~vwvaLAv--lGi~lL~p~~~--~---  141 (292)
T COG5006          73 ALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVALLS----SRRLRDFVWVALAV--LGIWLLLPLGQ--S---  141 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccHHHHHHHh----ccchhhHHHHHHHH--HHHHhheeccC--C---
Confidence            3445556667889999999999999999999999999988765    46665555666654  45544421111  1   


Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHH
Q 015473          201 MGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKAT  280 (406)
Q Consensus       201 ~~~~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~  280 (406)
                       ..+.+..|..+.+.+..+|+.+=+.-+|.-+..  ....-...-+ ..+.++.+|.-.   ...++   . +..++  .
T Consensus       142 -~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~--~g~~g~a~gm-~vAaviv~Pig~---~~ag~---~-l~~p~--l  208 (292)
T COG5006         142 -VWSLDPVGVALALGAGACWALYIVLGQRAGRAE--HGTAGVAVGM-LVAALIVLPIGA---AQAGP---A-LFSPS--L  208 (292)
T ss_pred             -cCcCCHHHHHHHHHHhHHHHHHHHHcchhcccC--CCchHHHHHH-HHHHHHHhhhhh---hhcch---h-hcChH--H
Confidence             122345688999999999999888888876432  2222111122 222333333221   11122   1 11222  1


Q ss_pred             HHHHHHHHH-----HHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcc
Q 015473          281 MLLIFNNAA-----QGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFS  349 (406)
Q Consensus       281 ~l~i~~~ai-----gg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~  349 (406)
                      ...-+..++     -..+=...+++.+.-.-+...++.+.++++.|++++||.+|..+|+|++.|+.+..-...
T Consensus       209 l~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~l  282 (292)
T COG5006         209 LPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTL  282 (292)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcccc
Confidence            111122222     222333455666655555666678899999999999999999999999999998875554

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.56  E-value=2.8e-06  Score=74.32  Aligned_cols=146  Identities=16%  Similarity=0.240  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHhhHhHhhhhcccC---CcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhH
Q 015473           44 FLVVGDCMLVGLQPILVYMSKVD---GRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNV  120 (406)
Q Consensus        44 ll~~~~~~~~~~~~~l~k~s~~~---g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~  120 (406)
                      ++.+.+.++.+.+.+++|....+   ++...++.+..+.......++..+.....+..+...........+..+..+...
T Consensus         3 ~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~   82 (153)
T PF03151_consen    3 ILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIF   82 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHH
Confidence            45566677777777775543222   224577888889999998888877655433211100000000000000112234


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhh
Q 015473          121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVN  189 (406)
Q Consensus       121 ~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv  189 (406)
                      .....+++....|...|..+++++|.+++++...|.+.+.++++++++|+++..|+.|+.+.++|+.+-
T Consensus        83 ~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Y  151 (153)
T PF03151_consen   83 LLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLY  151 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhee
Confidence            566677889999999999999999999999999999999999999999999999999999999998763

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=98.52  E-value=1.9e-06  Score=77.91  Aligned_cols=214  Identities=13%  Similarity=0.114  Sum_probs=138.8

Q ss_pred             HHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCcc
Q 015473          126 AFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGLPV  205 (406)
Q Consensus       126 Ally~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~~~~~~~~~~~~~  205 (406)
                      +.+.++.|+++..|+..++++..+.+..+.-.|+-+++++.||.|+...+.++.++...|++++.+.+...       ..
T Consensus        60 ~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~-------a~  132 (290)
T KOG4314|consen   60 SIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEH-------AD  132 (290)
T ss_pred             EEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchh-------hh
Confidence            35677889999999999999999999999999999999999999999999999999999999987654211       12


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCcchHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCccccccCChHHHHH
Q 015473          206 AMGAYIYTLIFITVPSMASVFNEYALKSQ--YDTSIYLQNLFLYGYGAIFNF-LGILVTAIFKGPDNLDILQGHSKATML  282 (406)
Q Consensus       206 ~~~G~ll~L~a~~~sala~V~~ekllk~~--~~~s~~~~~~~l~~~g~l~~l-~~~~~~~~~~~~~~~~~~~g~~~~~~l  282 (406)
                      .+.|+.+...+++.++++-|..++.....  .+.+.+  +--+.++-.++.- +.+..  .+++-+.+..|...   .|.
T Consensus       133 e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~F--mS~LGF~NL~~~~~~~lIL--~~T~VE~~qsFA~~---PWG  205 (290)
T KOG4314|consen  133 EIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHF--MSCLGFFNLCFISFPALIL--AFTGVEHLQSFAAA---PWG  205 (290)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHH--HHHHHHHHHHHHhhhHHHH--HHhchHHHHHHhhC---Cch
Confidence            35788888999999999888888776542  122222  2233334444332 22221  12332211111111   122


Q ss_pred             HHHHHHH----HHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcccccc
Q 015473          283 LIFNNAA----QGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSK  353 (406)
Q Consensus       283 ~i~~~ai----gg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~~~~  353 (406)
                      .....|.    ...++.+-+-...+++.+.....++...+....++=+-..+..+++|..++++|-.+.-.|.+|
T Consensus       206 ~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d~  280 (290)
T KOG4314|consen  206 CLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPEDK  280 (290)
T ss_pred             hhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecccch
Confidence            2111111    1111111112223344444444555667788888778889999999999999998887776443

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=98.35  E-value=2.8e-05  Score=76.44  Aligned_cols=65  Identities=18%  Similarity=0.315  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcc
Q 015473          127 FLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQL  191 (406)
Q Consensus       127 lly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~  191 (406)
                      +++.+.+.+.+.|+.+.|.+..+=+....+++.++++..+||||+++++|.+..+.++|++++..
T Consensus        58 ~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~  122 (300)
T PF05653_consen   58 LLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI  122 (300)
T ss_pred             HHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence            46788999999999999999999999999999999999999999999999999999999977643

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=98.34  E-value=5.8e-05  Score=72.53  Aligned_cols=214  Identities=12%  Similarity=0.100  Sum_probs=127.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccChHHHHHHh-hhHHHHHHHHHHHHhCCCCCHHHHH----HHHHHHHHHhhhccCCC
Q 015473          120 VLLAVPAFLYAINNYLKFIMQLYFNPATVKMLS-NLKVLVIAVLLKIIMRRRFSIIQWE----ALALLLIGISVNQLRSL  194 (406)
Q Consensus       120 ~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~-~~k~l~talls~l~Lkerls~~qwl----al~ll~~GV~lv~~~~~  194 (406)
                      +.-.+-+++..+.+.++|.+.+++..+...=++ ..+++.++++.+++++|.-+..+++    |+++..+|+.+...++.
T Consensus        46 ~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~  125 (269)
T PF06800_consen   46 IVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDK  125 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccc
Confidence            345666788999999999999999887776554 6888999999999999999998887    88899999998877664


Q ss_pred             CCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccc
Q 015473          195 PEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQ  274 (406)
Q Consensus       195 ~~~~~~~~~~~~~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~  274 (406)
                      .++..+. .....-|++..+++.+...++.+..+. .+    .+.+..-+-. ..|+.+......   .....   .+++
T Consensus       126 ~~~~~~~-~~~~~kgi~~Ll~stigy~~Y~~~~~~-~~----~~~~~~~lPq-aiGm~i~a~i~~---~~~~~---~~~~  192 (269)
T PF06800_consen  126 KSDKSSS-KSNMKKGILALLISTIGYWIYSVIPKA-FH----VSGWSAFLPQ-AIGMLIGAFIFN---LFSKK---PFFE  192 (269)
T ss_pred             ccccccc-ccchhhHHHHHHHHHHHHHHHHHHHHh-cC----CChhHhHHHH-HHHHHHHHHHHh---hcccc---cccc
Confidence            3321110 111123666666666666665554433 22    2333111111 122222211111   11111   1223


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccH----HHHHHHHHHHHHHHH
Q 015473          275 GHSKATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTM----NFLLGISIVFISMHQ  346 (406)
Q Consensus       275 g~~~~~~l~i~~~aigg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~----~~~lG~~LVi~gv~l  346 (406)
                      ..++.-.+.-+.-+++.+..-...+..+....-...-++++++++.|+++++|.=+.    ..++|.++++.|..+
T Consensus       193 k~~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  193 KKSWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             cchHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence            333222222223344554443334433322222333478899999999999998764    467888888887643

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.32  E-value=2.6e-05  Score=74.13  Aligned_cols=129  Identities=15%  Similarity=0.097  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhHHHH
Q 015473           44 FLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLA  123 (406)
Q Consensus        44 ll~~~~~~~~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~  123 (406)
                      ++.+.+.++++...+..|...++  ++.++.+....+.++..++........++.     .+ .+.       ++.....
T Consensus       131 ~~~l~a~~~~a~~~~~~k~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~-~~~-------~~~~~~~  195 (260)
T TIGR00950       131 LLGLGSGISFALGTVLYKRLVKK--EGPELLQFTGWVLLLGALLLLPFAWFLGPN-----PQ-ALS-------LQWGALL  195 (260)
T ss_pred             HHHHHHHHHHHHHHHHHhHHhhc--CCchHHHHHHHHHHHHHHHHHHHHHhcCCC-----CC-cch-------HHHHHHH
Confidence            35556677788888887765432  122222222234555555544443332211     11 111       1222344


Q ss_pred             HHHHH-HHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Q 015473          124 VPAFL-YAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGIS  187 (406)
Q Consensus       124 vpAll-y~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~  187 (406)
                      ..+++ ..+...+++.++++.++++.+++..+.|+++++++++++||+++..||.+..+.++|++
T Consensus       196 ~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~  260 (260)
T TIGR00950       196 YLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL  260 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence            44544 56888999999999999999999999999999999999999999999999999999874

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=98.25  E-value=1.5e-05  Score=66.39  Aligned_cols=119  Identities=18%  Similarity=0.257  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHH-----HHHHHHHHHHHH
Q 015473          219 VPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATM-----LLIFNNAAQGIL  293 (406)
Q Consensus       219 ~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~-----l~i~~~aigg~~  293 (406)
                      ++|..+++.|+..++   .++...+.+-...+.+ .++....   .+...    ....+...+     ..++..+++..+
T Consensus         2 ~~a~~~~~~k~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (126)
T PF00892_consen    2 SWAIYSVFSKKLLKK---ISPLSITFWRFLIAGI-LLILLLI---LGRKP----FKNLSPRQWLWLLFLGLLGTALAYLL   70 (126)
T ss_pred             eeeeHHHHHHHHhcc---CCHHHHHHHHHHHHHH-HHHHHHh---hcccc----ccCCChhhhhhhhHhhccceehHHHH
Confidence            467788889988876   3455455555555544 2222221   11110    111111111     112234556667


Q ss_pred             HHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhc
Q 015473          294 SCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFF  348 (406)
Q Consensus       294 v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~  348 (406)
                      ....+|+.+.........++++++.++++++++|+++..+++|+.+++.|+.+.+
T Consensus        71 ~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   71 YFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            7788899998888888999999999999999999999999999999999998653

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.23  E-value=1.3e-05  Score=67.12  Aligned_cols=65  Identities=11%  Similarity=0.120  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 015473          126 AFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQ  190 (406)
Q Consensus       126 Ally~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~  190 (406)
                      .+.|.+...+.-.+++.+|.+.+..+.++.++.+++++++++|||++++||+++.+..+|++++.
T Consensus        44 ~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         44 LACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            36789999999999999999999999999999999999999999999999999999999998874

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.14  E-value=2.9e-05  Score=76.00  Aligned_cols=140  Identities=12%  Similarity=0.127  Sum_probs=93.8

Q ss_pred             HHHHHHHHHhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHH-----hhhhh
Q 015473           45 LVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQ-----AARNN  119 (406)
Q Consensus        45 l~~~~~~~~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~-----~~r~~  119 (406)
                      +.+.+.++++.+.+..|....+.  ++++.+..+.+.....+..+++.......      +... ..+.+     .....
T Consensus       149 ~~l~a~~~~a~~~v~~k~~~~~~--~~~~~~~~~~~~~~~~~~l~p~~~~~~~~------~~~~-~~~~~~~~~~~~~~~  219 (302)
T TIGR00817       149 SAMISNITFVSRNIFSKKAMTIK--SLDKTNLYAYISIMSLFLLSPPAFITEGP------PFLP-HGFMQAISGVNVTKI  219 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccC--CCCcccHHHHHHHHHHHHHHHHHHHHcch------HHHH-HHHHHhhcccCchHH
Confidence            45556667887777766432222  25677777777776666655554332210      0000 00000     00011


Q ss_pred             HH-HHHHHH-HHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCC
Q 015473          120 VL-LAVPAF-LYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRS  193 (406)
Q Consensus       120 ~~-~~vpAl-ly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~  193 (406)
                      +. ....+. .+...|.+.|.+++++++.++++....+|++++++++++++|+++..|+++.++.++|+.+.+...
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k  295 (302)
T TIGR00817       220 YTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVK  295 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence            11 223333 566777888999999999999999999999999999999999999999999999999999876543

specificities overlap.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.07  E-value=6.1e-05  Score=75.64  Aligned_cols=144  Identities=14%  Similarity=0.158  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHhhHhHhhhhcccCCc---ccchHHHHHHHHHHHHHHHHHHHHH-HHhhcccCC--CC-CcchhHHHHHhh
Q 015473           44 FLVVGDCMLVGLQPILVYMSKVDGR---FKFSPISVNFLTEMTKVLFAIVMLF-FQARHQKVG--EK-PLLSISTFIQAA  116 (406)
Q Consensus        44 ll~~~~~~~~~~~~~l~k~s~~~g~---~~~~~~~vv~~~E~~kl~i~~~ll~-~~~~~~~~~--~~-~~l~~~~~~~~~  116 (406)
                      ++.+.+.+.++.+.++.|...++.+   .++++...-...-++..++.+++.. .+.......  .. .......+.   
T Consensus       197 ~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~---  273 (350)
T PTZ00343        197 WCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKG---  273 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchH---
Confidence            3445566778888877664322211   1345554444445566666655543 332100000  00 000000000   


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 015473          117 RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQ  190 (406)
Q Consensus       117 r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~  190 (406)
                      .-......-++.|.++|.+.|++++++++.++++...+||+++.++++++++|+++..|+++.++.++|+.+.+
T Consensus       274 ~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs  347 (350)
T PTZ00343        274 IIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS  347 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence            00112334467899999999999999999999999999999999999999999999999999999999998764

>COG2510 Predicted membrane protein [Function unknown]

Probab=98.06  E-value=3.2e-05  Score=65.49  Aligned_cols=127  Identities=17%  Similarity=0.236  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhc-CCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cccccCChHHHHHHHHHH
Q 015473          210 YIYTLIFITVPSMASVFNEYALKSQ-YDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDN-LDILQGHSKATMLLIFNN  287 (406)
Q Consensus       210 ~ll~L~a~~~sala~V~~ekllk~~-~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~-~~~~~g~~~~~~l~i~~~  287 (406)
                      ..+.+++++++++..++.+--+++- ++.-..+++.-+    .++......    ..|+.. .+.   .+...|..+...
T Consensus         5 ~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi----~~~l~~v~~----~~g~~~~~~~---~~~k~~lflilS   73 (140)
T COG2510           5 IIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVI----LIFLLIVLL----VTGNWQAGGE---IGPKSWLFLILS   73 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHH----HHHHHHHHH----hcCceecccc---cCcceehhhhHH
Confidence            3667888999999887554444532 111122333332    221111111    233311 011   123334443333


Q ss_pred             HH----HHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHh
Q 015473          288 AA----QGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQF  347 (406)
Q Consensus       288 ai----gg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly  347 (406)
                      ++    +-++-...+|..+.....+.+.+++++++++|++++||.+|..+++|..+|.+|..+-
T Consensus        74 Gla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailv  137 (140)
T COG2510          74 GLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILV  137 (140)
T ss_pred             HHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeE
Confidence            33    3334445556666666678888999999999999999999999999999999987653

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=97.96  E-value=0.00027  Score=71.20  Aligned_cols=64  Identities=11%  Similarity=0.102  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCC
Q 015473          130 AINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRS  193 (406)
Q Consensus       130 ~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~  193 (406)
                      .+...++++++++++|+...+...+.|++++++++++|+|++++.|+++.++.+.|+.+++.+.
T Consensus       267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~  330 (358)
T PLN00411        267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGK  330 (358)
T ss_pred             HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhh
Confidence            3566788999999999999999999999999999999999999999999999999999987543

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=97.93  E-value=0.00076  Score=58.03  Aligned_cols=121  Identities=14%  Similarity=0.080  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHHHHHHHH
Q 015473          209 AYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNA  288 (406)
Q Consensus       209 G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~l~i~~~a  288 (406)
                      |+++.++++++.+.+.+..++-+++..+.+...   .    . .. .....     .         .+..+.++.+...+
T Consensus         3 ~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~---~----~-~~-~~~~~-----~---------~p~~~i~lgl~~~~   59 (129)
T PRK02971          3 GYLWGLASVLLASVAQLSLKWGMSRLPLLSHAW---D----F-IA-ALLAF-----G---------LALRAVLLGLAGYA   59 (129)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhCCCccchh---H----H-HH-HHHHH-----h---------ccHHHHHHHHHHHH
Confidence            567888888888888888877666532222110   0    0 00 00000     0         11113444444445


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHH--HhCCCccHHHHHHHHHHHHHHHHhccccc
Q 015473          289 AQGILSCFFLKYADAILKKYSSTVATIFTGIASAV--LFGHTLTMNFLLGISIVFISMHQFFSSLS  352 (406)
Q Consensus       289 igg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~l--lfge~~t~~~~lG~~LVi~gv~ly~~~~~  352 (406)
                      +.-.+-.++++..|.....+..+...++..++++.  +|||++|+.+++|+++|+.|+++-+...+
T Consensus        60 la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~  125 (129)
T PRK02971         60 LSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT  125 (129)
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence            55566667788877666655555555667677774  89999999999999999999999876433

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=97.93  E-value=0.00057  Score=66.75  Aligned_cols=65  Identities=22%  Similarity=0.249  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCC
Q 015473          129 YAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRS  193 (406)
Q Consensus       129 y~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~  193 (406)
                      -.++..++++++++.++...+++..+.|++.+++++++++|+++..||++.++.++|++......
T Consensus       219 t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~  283 (293)
T PRK10532        219 TALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI  283 (293)
T ss_pred             HHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence            45777899999999999999999999999999999999999999999999999999998875543

>PRK11689 aromatic amino acid exporter; Provisional

Probab=97.86  E-value=0.00045  Score=67.55  Aligned_cols=68  Identities=16%  Similarity=0.131  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccC
Q 015473          125 PAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLR  192 (406)
Q Consensus       125 pAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~  192 (406)
                      -++.-.+...+++++++++++...+++..+.|++.+++++++++|+++..||++.++.+.|+.+....
T Consensus       221 ~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~  288 (295)
T PRK11689        221 AAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLA  288 (295)
T ss_pred             HHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhh
Confidence            33445678899999999999999999999999999999999999999999999999999999887543

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=97.86  E-value=0.00056  Score=66.75  Aligned_cols=64  Identities=17%  Similarity=0.200  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccC
Q 015473          129 YAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLR  192 (406)
Q Consensus       129 y~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~  192 (406)
                      ..+.+.+++++++++++++..++..+.|+++++++++++||+++..||++.++.++|+.+.+.+
T Consensus       223 s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~  286 (292)
T PRK11272        223 SIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG  286 (292)
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            4477889999999999999999999999999999999999999999999999999999887553

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=97.81  E-value=0.00062  Score=66.00  Aligned_cols=129  Identities=11%  Similarity=-0.026  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCh--HHHHHH--HH
Q 015473          210 YIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHS--KATMLL--IF  285 (406)
Q Consensus       210 ~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~g~~--~~~~l~--i~  285 (406)
                      +++.++++++.+...+..|+..+++   +.. + .+....+.++..+....  ...+..    +...+  ++.+..  .+
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~---~~~-~-~~~~~~~~~~l~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~   71 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKE---PDF-L-WWALLAHSVLLTPYGLW--YLAQVG----WSRLPATFWLLLAISAV   71 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCch---hHH-H-HHHHHHHHHHHHHHHHH--hcccCC----CCCcchhhHHHHHHHHH
Confidence            4677889999999999998776652   222 1 22233333333332221  000111    11111  121211  12


Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcc
Q 015473          286 NNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFS  349 (406)
Q Consensus       286 ~~aigg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~  349 (406)
                      ..+.+..+....+++.+........++.++++.+++++++||+++..+++|.++++.|+.+-..
T Consensus        72 ~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~  135 (281)
T TIGR03340        72 ANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL  135 (281)
T ss_pred             HHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence            3344455666777888888888888899999999999999999999999999999999987554

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=97.81  E-value=0.00056  Score=58.85  Aligned_cols=72  Identities=14%  Similarity=0.156  Sum_probs=63.0

Q ss_pred             HHHHH-HHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHH--HhCCCCCHHHHHHHHHHHHHHhhhccCC
Q 015473          122 LAVPA-FLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKI--IMRRRFSIIQWEALALLLIGISVNQLRS  193 (406)
Q Consensus       122 ~~vpA-lly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l--~Lkerls~~qwlal~ll~~GV~lv~~~~  193 (406)
                      +...+ .+|.+...++..+++.+|++.+.-+.+..+..+++.++.  ++||++|++||+++++.++|+.++..++
T Consensus        50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~  124 (129)
T PRK02971         50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT  124 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence            34444 578999999999999999999999999888888888885  8999999999999999999999986543

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.73  E-value=0.0016  Score=64.04  Aligned_cols=139  Identities=19%  Similarity=0.323  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHH--HhhcccCCCCCcchhHHHH-HhhhhhH
Q 015473           44 FLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFF--QARHQKVGEKPLLSISTFI-QAARNNV  120 (406)
Q Consensus        44 ll~~~~~~~~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~--~~~~~~~~~~~~l~~~~~~-~~~r~~~  120 (406)
                      ++++.+.++.+.+...++....+  ++.++.+.++..+++.+++.......  .+...     +   ...+. +++.-..
T Consensus       157 ~ll~~sl~~~a~~~~~qe~~~~~--~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~-----~---~~~f~~~~p~~~~  226 (303)
T PF08449_consen  157 ILLLLSLLLDAFTGVYQEKLFKK--YGKSPWELMFYTNLFSLPFLLILLFLLPTGEFR-----S---AIRFISAHPSVLL  226 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhh-----H---HHHHHHHhHHHHH
Confidence            34445556677777666544322  23457889999999999988877665  33211     1   11222 2222223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccC
Q 015473          121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLR  192 (406)
Q Consensus       121 ~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~  192 (406)
                      ....-++..+......+.-.+..++.+..++..++-+.+.++|.+++++++++.||.|+++.+.|..+-...
T Consensus       227 ~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~  298 (303)
T PF08449_consen  227 YLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYA  298 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHh
Confidence            445555666666666677889999999999999999999999999999999999999999999999886543

; GO: 0055085 transmembrane transport

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.64  E-value=0.00048  Score=58.45  Aligned_cols=73  Identities=11%  Similarity=0.166  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccChHHHHHHh-hhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCC
Q 015473          121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLS-NLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRS  193 (406)
Q Consensus       121 ~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~-~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~  193 (406)
                      ...+...+|.++..+...+++++|.+.+..+. ..-.+.+++.+++++||+++..|++++.+.++|++.+...+
T Consensus        32 ~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         32 GFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence            34566678999999999999999999887775 69999999999999999999999999999999999886543

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=97.62  E-value=0.003  Score=61.86  Aligned_cols=63  Identities=16%  Similarity=0.155  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccC
Q 015473          130 AINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLR  192 (406)
Q Consensus       130 ~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~  192 (406)
                      .+...+++.+++++++.+...+..+.|++.+++++++++|+++..||++.++.++|+.+...+
T Consensus       226 ~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~  288 (299)
T PRK11453        226 IVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG  288 (299)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence            467778899999999999999999999999999999999999999999999999999887543

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.59  E-value=0.0008  Score=56.26  Aligned_cols=72  Identities=15%  Similarity=0.175  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccChHHHHHH-hhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccC
Q 015473          121 LLAVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLR  192 (406)
Q Consensus       121 ~~~vpAlly~~~n~L~f~al~~l~~~t~~vl-~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~  192 (406)
                      .....-..|.++..+...+++.+|.+.+..+ .....+.+++.+++++||++++.|++++.+.++|++.+...
T Consensus        32 ~~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~  104 (110)
T PRK09541         32 PSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            4455567899999999999999999988777 45899999999999999999999999999999999998653

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.58  E-value=0.00075  Score=55.94  Aligned_cols=71  Identities=14%  Similarity=0.035  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccChHHHHHHhh-hHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcc
Q 015473          121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSN-LKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQL  191 (406)
Q Consensus       121 ~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~-~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~  191 (406)
                      ...+....|.++..+.-.+++.+|.+++-.+.. .-.+.+++.+++++||++++.|++++.+..+|++.+..
T Consensus        31 ~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l  102 (105)
T PRK11431         31 PSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL  102 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            445557789999999999999999888766654 99999999999999999999999999999999998743

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=97.57  E-value=0.0012  Score=64.46  Aligned_cols=132  Identities=16%  Similarity=0.183  Sum_probs=89.7

Q ss_pred             hHHHHHHHHHHHHHHHhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhh
Q 015473           38 QRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAAR  117 (406)
Q Consensus        38 ~~~l~~ll~~~~~~~~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r  117 (406)
                      .+++...++  +.+.|+......|...      ++|.+.+|.+-.-=++.+..+.....+     .+|..        .+
T Consensus       151 ~~Gi~~~l~--sg~~y~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~--------~~  209 (290)
T TIGR00776       151 KKGILLLLM--STIGYLVYVVVAKAFG------VDGLSVLLPQAIGMVIGGIIFNLGHIL-----AKPLK--------KY  209 (290)
T ss_pred             hhHHHHHHH--HHHHHHHHHHHHHHcC------CCcceehhHHHHHHHHHHHHHHHHHhc-----ccchH--------HH
Confidence            345534433  3555777777776542      445444444444333333333222211     02211        12


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHh-ccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHH----HHHHHHHHHHhhhc
Q 015473          118 NNVLLAVPAFLYAINNYLKFIMQL-YFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQW----EALALLLIGISVNQ  190 (406)
Q Consensus       118 ~~~~~~vpAlly~~~n~L~f~al~-~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qw----lal~ll~~GV~lv~  190 (406)
                      ..+...+.+++..+++.+++.+++ +++++++.++.+..|+..++++++++||+.+++|+    ++.++...|+.++.
T Consensus       210 ~~~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       210 AILLNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG  287 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence            333455577778899999999999 99999999999999999999999999999999999    99999999998864

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.56  E-value=0.00089  Score=55.26  Aligned_cols=72  Identities=17%  Similarity=0.210  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccChHHH-HHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcc
Q 015473          120 VLLAVPAFLYAINNYLKFIMQLYFNPATV-KMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQL  191 (406)
Q Consensus       120 ~~~~vpAlly~~~n~L~f~al~~l~~~t~-~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~  191 (406)
                      +...+..+.|.++..+.-.+++++|.+++ .+-.-.-.+-+++.+++++||+++..|++++.++.+|++.+..
T Consensus        31 ~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~  103 (106)
T COG2076          31 WPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL  103 (106)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence            35666778899999999999999998877 4556688999999999999999999999999999999988754

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.49  E-value=0.0011  Score=55.34  Aligned_cols=71  Identities=13%  Similarity=0.066  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccChHHHHHH-hhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 015473          120 VLLAVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQ  190 (406)
Q Consensus       120 ~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl-~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~  190 (406)
                      +...+....|.++..+.-.+++++|.+++-.+ ...-.+.+++.+++++||++++.|++++.+.++|++...
T Consensus        36 ~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         36 IYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK  107 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            34556677899999999999999998887555 558899999999999999999999999999999998763

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=97.48  E-value=0.0039  Score=60.93  Aligned_cols=64  Identities=5%  Similarity=0.049  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcc
Q 015473          128 LYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQL  191 (406)
Q Consensus       128 ly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~  191 (406)
                      .-.+...+++.+++++|++..+.+....|++..++++++++|+++..|+.+.++.++|+.++..
T Consensus       222 ~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~  285 (296)
T PRK15430        222 VTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVM  285 (296)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            4457888999999999999999999999999999999999999999999999999888877643

>TIGR00688 rarD rarD protein

Probab=97.25  E-value=0.011  Score=56.37  Aligned_cols=132  Identities=9%  Similarity=0.049  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cccccCChH-HHHHHH--
Q 015473          209 AYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDN-LDILQGHSK-ATMLLI--  284 (406)
Q Consensus       209 G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~-~~~~~g~~~-~~~l~i--  284 (406)
                      |.++++++++++|..++..|.+ .+   .++.....+=.+++.++.++....   ...... ...++..+. ..+..+  
T Consensus         3 g~~~~i~a~~~wg~~~~~~k~~-~~---~~~~~i~~~R~~~a~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~   75 (256)
T TIGR00688         3 GIIVSLLASFLFGYMYYYSKLL-KP---LPATDILGHRMIWSFPFMLLSVTL---FRQWAALIERLKRIQKRPLILSLLL   75 (256)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHh-cc---CCHHHHHHHHHHHHHHHHHHHHHH---HcchHHHHHHHhCcccchHHHHHHH
Confidence            6678889999999999988863 32   455544444344554443332211   111000 000111111 111111  


Q ss_pred             --HHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHh
Q 015473          285 --FNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQF  347 (406)
Q Consensus       285 --~~~aigg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly  347 (406)
                        +..++...+....++|.+........++.|+++.+++.++++|+++..+++|..+.+.|+.+-
T Consensus        76 ~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li  140 (256)
T TIGR00688        76 CGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISN  140 (256)
T ss_pred             HHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence              123334455566778877777777788999999999999999999999999999999998754

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=97.14  E-value=0.004  Score=52.10  Aligned_cols=61  Identities=8%  Similarity=0.093  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhc
Q 015473          288 AAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFF  348 (406)
Q Consensus       288 aigg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~  348 (406)
                      ++...+...++|..|-...-...+++.+++.++|+++|||++|..+++|.++++.|+.+-.
T Consensus        48 ~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         48 GLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            3344566677787765555555558899999999999999999999999999999987643

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.11  E-value=0.0059  Score=51.84  Aligned_cols=66  Identities=15%  Similarity=0.211  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHHHHhh-hHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015473          285 FNNAAQGILSCFFLKYAD-AILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS  350 (406)
Q Consensus       285 ~~~aigg~~v~~~~ky~~-~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~  350 (406)
                      +.-++.-.+.+.++|+.+ ++.-...+....+.+.++|+++|||++|+..++|+.+++.|+..-+..
T Consensus        38 ~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~  104 (120)
T PRK10452         38 VMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG  104 (120)
T ss_pred             HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence            333444456667777765 333344456788999999999999999999999999999999877553

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=97.07  E-value=0.0041  Score=52.08  Aligned_cols=70  Identities=17%  Similarity=0.226  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccChHHHHHH-hhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhh
Q 015473          120 VLLAVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVN  189 (406)
Q Consensus       120 ~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl-~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv  189 (406)
                      ++|.+|=++|.....++|+.+...|.+...-+ +++.-++|++.++++.+|..+++.|+++.+..+|+.+.
T Consensus        42 ~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   42 PKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            47999999999999999999999999888766 69999999999999999999999999999999998753

Many members are annotated as potential transmembrane proteins.

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=96.98  E-value=0.0098  Score=49.72  Aligned_cols=63  Identities=19%  Similarity=0.196  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHhh-hHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015473          288 AAQGILSCFFLKYAD-AILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS  350 (406)
Q Consensus       288 aigg~~v~~~~ky~~-~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~  350 (406)
                      ++.-.+.+.++|+.+ ++.-...+..+.+.++++|+++|||++|+..++|+++++.|+.+-+..
T Consensus        41 ~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~  104 (110)
T PRK09541         41 CASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL  104 (110)
T ss_pred             HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            344445567777755 233334455788999999999999999999999999999999987653

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=96.89  E-value=0.013  Score=48.74  Aligned_cols=60  Identities=25%  Similarity=0.296  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcc
Q 015473          289 AQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFS  349 (406)
Q Consensus       289 igg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~  349 (406)
                      .+..+..+..++.+. .......+.++++.++|.++|+|+++...++|..+++.|+.+-..
T Consensus        47 ~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~  106 (113)
T PF13536_consen   47 VAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAW  106 (113)
T ss_pred             HHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhh
Confidence            445566677788885 555777789999999999999999999999999999999987655

>PRK13499 rhamnose-proton symporter; Provisional

Probab=96.84  E-value=0.62  Score=46.69  Aligned_cols=223  Identities=13%  Similarity=0.080  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccChHHHHHH-hhhHHHHHHHHHHHHhCCCC---CH----HHHHHHHHHHHHHhhhcc--
Q 015473          122 LAVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVLVIAVLLKIIMRRRF---SI----IQWEALALLLIGISVNQL--  191 (406)
Q Consensus       122 ~~vpAlly~~~n~L~f~al~~l~~~t~~vl-~~~k~l~talls~l~Lkerl---s~----~qwlal~ll~~GV~lv~~--  191 (406)
                      -.+-+++-.+.|..++.+++++..+..+-+ .-+..+..+++..++++|--   +.    .-.+++++..+|+++...  
T Consensus        76 ~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag  155 (345)
T PRK13499         76 VFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAG  155 (345)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhh
Confidence            344557888999999999999988877655 55888999999999988543   33    355677888889988876  


Q ss_pred             --CCCCCCCCCCCCccchHHHHHHHHHHHHHHHHH-------HHHHHHhhhcCCcchHHHHHHHH---HHHHHHHHHHHH
Q 015473          192 --RSLPEGSTAMGLPVAMGAYIYTLIFITVPSMAS-------VFNEYALKSQYDTSIYLQNLFLY---GYGAIFNFLGIL  259 (406)
Q Consensus       192 --~~~~~~~~~~~~~~~~~G~ll~L~a~~~sala~-------V~~ekllk~~~~~s~~~~~~~l~---~~g~l~~l~~~~  259 (406)
                        ++..++.++.+.....-|+++.+++.+.+++.+       +..|...+.. ..+++....+..   ..+.+.+++...
T Consensus       156 ~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g-~~~~~~~lp~~~~~~~G~~~~n~~~~~  234 (345)
T PRK13499        156 QLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALG-VDPLYAALPSYVVIMGGGAITNLGFCF  234 (345)
T ss_pred             hhcccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcC-CCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence              433211100001111237778888888887766       3333322221 223333333322   333333332211


Q ss_pred             HHHHhcCCCcc--ccccCChHHHHHHHHHHHHHHHHHH---HHHHHhhhHH---HH-----HHhhHHHHHHHHHHHHHhC
Q 015473          260 VTAIFKGPDNL--DILQGHSKATMLLIFNNAAQGILSC---FFLKYADAIL---KK-----YSSTVATIFTGIASAVLFG  326 (406)
Q Consensus       260 ~~~~~~~~~~~--~~~~g~~~~~~l~i~~~aigg~~v~---~~~ky~~~i~---k~-----~a~~~~iv~t~lls~llfg  326 (406)
                      .. ..+++...  ..+.......+-..+..+++|.+-.   +.+-.+.+..   ..     +...+.++++.+.|+ +++
T Consensus       235 ~~-~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lk  312 (345)
T PRK13499        235 IR-LAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLK  312 (345)
T ss_pred             HH-HhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhh
Confidence            10 01222110  0111110011212222233333111   1111111100   11     222456788999998 488


Q ss_pred             CCcc------HHHHHHHHHHHHHHHHh
Q 015473          327 HTLT------MNFLLGISIVFISMHQF  347 (406)
Q Consensus       327 e~~t------~~~~lG~~LVi~gv~ly  347 (406)
                      |.=+      ...++|.++++.|..+-
T Consensus       313 E~K~a~~k~~~~l~~G~vliI~g~~li  339 (345)
T PRK13499        313 EWKGASRRPVRVLSLGCVVIILAANIV  339 (345)
T ss_pred             hccCCCccchhHHHHHHHHHHHHHHHH
Confidence            8766      67889999999888654

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=96.82  E-value=0.021  Score=55.07  Aligned_cols=120  Identities=14%  Similarity=0.148  Sum_probs=85.1

Q ss_pred             hHHHHHHHHHHHHHHHhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhh
Q 015473           38 QRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAAR  117 (406)
Q Consensus        38 ~~~l~~ll~~~~~~~~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r  117 (406)
                      .+.+..+  +.+.+.|.....+.|+..      .++.+ .++-+.+.++++...+..-.+      ++...        |
T Consensus       137 ~kgi~~L--l~stigy~~Y~~~~~~~~------~~~~~-~~lPqaiGm~i~a~i~~~~~~------~~~~~--------k  193 (269)
T PF06800_consen  137 KKGILAL--LISTIGYWIYSVIPKAFH------VSGWS-AFLPQAIGMLIGAFIFNLFSK------KPFFE--------K  193 (269)
T ss_pred             hhHHHHH--HHHHHHHHHHHHHHHhcC------CChhH-hHHHHHHHHHHHHHHHhhccc------ccccc--------c
Confidence            3444333  333555666666766642      33444 355667777777555443221      11111        2


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 015473          118 NNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALA  180 (406)
Q Consensus       118 ~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~  180 (406)
                      ..++-.++++++.+.|.+.+++.+..-.++...++|+.++..++-+.++|||+=+++++...+
T Consensus       194 ~~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~  256 (269)
T PF06800_consen  194 KSWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTL  256 (269)
T ss_pred             chHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHH
Confidence            344678899999999999999999999999999999999999999999999999999886554

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=96.82  E-value=0.0025  Score=62.90  Aligned_cols=150  Identities=15%  Similarity=0.156  Sum_probs=101.1

Q ss_pred             cccchhhHHHHHHHHHHHHHHHhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHH-HHHHHHhhcccCCCCCcchhH
Q 015473           32 TRVSSKQRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAI-VMLFFQARHQKVGEKPLLSIS  110 (406)
Q Consensus        32 ~~~~~k~~~l~~ll~~~~~~~~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~-~ll~~~~~~~~~~~~~~l~~~  110 (406)
                      .+.+-.+.+.  +......+.++.|.++.|....+.++..++........-+.+++.+ ++.....+......  ....+
T Consensus       156 ~e~~fn~~G~--i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~--~~~~~  231 (316)
T KOG1441|consen  156 TELSFNLFGF--ISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGF--LTAPW  231 (316)
T ss_pred             ccccccHHHH--HHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeee--ecccc
Confidence            3444555555  2334455668888888776554334556676655444444444444 44333222111000  00001


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 015473          111 TFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQ  190 (406)
Q Consensus       111 ~~~~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~  190 (406)
                      .+     +...+..-++++...|...|..+.+++|-|+++.+..|-..+...+++++++++++.|.++.++..+|+.+-.
T Consensus       232 ~~-----~~~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~  306 (316)
T KOG1441|consen  232 FV-----TFLILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYS  306 (316)
T ss_pred             ch-----hhHHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHH
Confidence            11     1334555558999999999999999999999999999999999999999999999999999999999998853

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.77  E-value=0.0057  Score=49.46  Aligned_cols=61  Identities=10%  Similarity=0.242  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccChHHHHHH-hhhHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 015473          122 LAVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVLVIAVLLKIIMRRRFSIIQWEALALL  182 (406)
Q Consensus       122 ~~vpAlly~~~n~L~f~al~~l~~~t~~vl-~~~k~l~talls~l~Lkerls~~qwlal~ll  182 (406)
                      ....-..|.++..+.-.+++++|.+++--+ .....+.+++.+.+++||++|..||.++.+.
T Consensus        32 ~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   32 TILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             --HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            344445899999999999999999988655 5699999999999999999999999998763

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.76  E-value=0.0078  Score=58.80  Aligned_cols=67  Identities=13%  Similarity=0.288  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccC
Q 015473          126 AFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLR  192 (406)
Q Consensus       126 Ally~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~  192 (406)
                      -+.+.+.+.+.|.|+.+-|++...-+..+.++..++++..+||||++..-.++.++.++|-.++...
T Consensus        71 ~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~h  137 (335)
T KOG2922|consen   71 MLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIH  137 (335)
T ss_pred             HHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEe
Confidence            3567789999999999999999999999999999999999999999999999999999998766443

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=96.71  E-value=0.077  Score=50.46  Aligned_cols=72  Identities=22%  Similarity=0.285  Sum_probs=63.6

Q ss_pred             HHHHHHHHHH-HHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccC
Q 015473          121 LLAVPAFLYA-INNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLR  192 (406)
Q Consensus       121 ~~~vpAlly~-~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~  192 (406)
                      .....+++.. +...+.+.+++..++.....+..+.|++.+++++++++|+++..|+++..+.+.|+.+...+
T Consensus       216 ~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         216 LLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            4555555544 68899999999999999999999999999999999999999999999999999999888544

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=96.68  E-value=0.1  Score=43.55  Aligned_cols=62  Identities=18%  Similarity=0.095  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHHHhh-hHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHh
Q 015473          286 NNAAQGILSCFFLKYAD-AILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQF  347 (406)
Q Consensus       286 ~~aigg~~v~~~~ky~~-~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly  347 (406)
                      .-++.-.+.+.++|+.+ ++.-...+....+.+++.|+++|||++|+..++|+++++.|+..-
T Consensus        44 ~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         44 AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            33445566777788765 333355566788999999999999999999999999999999764

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=96.44  E-value=0.12  Score=42.68  Aligned_cols=62  Identities=18%  Similarity=0.255  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHhh-hHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcc
Q 015473          288 AAQGILSCFFLKYAD-AILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFS  349 (406)
Q Consensus       288 aigg~~v~~~~ky~~-~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~  349 (406)
                      .+.-.+.+..+|+.+ .+.-...+...++.+.+.|+++|||++|...++|..+++.|+..-+.
T Consensus        41 ~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~  103 (106)
T COG2076          41 GLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL  103 (106)
T ss_pred             HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence            344456677788866 33335666778899999999999999999999999999999987554

>PRK11431 multidrug efflux system protein; Provisional

Probab=96.42  E-value=0.038  Score=45.82  Aligned_cols=61  Identities=13%  Similarity=0.160  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHhh-hHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhc
Q 015473          288 AAQGILSCFFLKYAD-AILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFF  348 (406)
Q Consensus       288 aigg~~v~~~~ky~~-~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~  348 (406)
                      ++.-.+.+.++|+.+ ++.-...+...++.+++.|+++|||++|+..++|+.+++.|+..-+
T Consensus        40 ~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         40 IVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence            444456667777765 3444566667889999999999999999999999999999998754

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=96.29  E-value=0.18  Score=50.37  Aligned_cols=63  Identities=14%  Similarity=0.182  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015473          288 AAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS  350 (406)
Q Consensus       288 aigg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~  350 (406)
                      ..+..++...++|.+-.........+++++.++|++++++++++.+++|+.+.++|+.+-...
T Consensus        90 v~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~s  152 (334)
T PF06027_consen   90 VEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVS  152 (334)
T ss_pred             HHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeee
Confidence            346677778888888777778888999999999999999999999999999999998866553

Some of the sequences in this family are annotated as putative membrane proteins.

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=96.27  E-value=0.014  Score=55.25  Aligned_cols=59  Identities=20%  Similarity=0.258  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhh
Q 015473          131 INNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVN  189 (406)
Q Consensus       131 ~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv  189 (406)
                      +-..|-.++++.+|..+|.++.++.|.+-++..+++|+|++|..||+++.+..++++=.
T Consensus       222 lPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~  280 (292)
T COG5006         222 LPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGS  280 (292)
T ss_pred             cchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Confidence            55677889999999999999999999999999999999999999999999888877533

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=96.27  E-value=0.055  Score=53.27  Aligned_cols=116  Identities=10%  Similarity=0.084  Sum_probs=80.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHHHHHH
Q 015473          207 MGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFN  286 (406)
Q Consensus       207 ~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~l~i~~  286 (406)
                      ..|.++.+.++++.+.+..++||-.++.++.+....  .     -..   ..     ++           ++..|.-++.
T Consensus         6 ~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~--~-----~~~---~~-----l~-----------~~~W~~G~~~   59 (300)
T PF05653_consen    6 YIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAG--S-----GGR---SY-----LR-----------RPLWWIGLLL   59 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc--c-----hhh---HH-----Hh-----------hHHHHHHHHH
Confidence            468899999999999999988887665312111100  0     000   00     00           1122222334


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhc
Q 015473          287 NAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFF  348 (406)
Q Consensus       287 ~aigg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~  348 (406)
                      .++|...-...+.+++..+..+....+++++.+++..+++|+++...++|.++++.|..+-.
T Consensus        60 ~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv  121 (300)
T PF05653_consen   60 MVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV  121 (300)
T ss_pred             HhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence            45565555567788998888888999999999999999999999999999999999986543

>TIGR00803 nst UDP-galactose transporter

Probab=95.95  E-value=0.081  Score=49.33  Aligned_cols=67  Identities=9%  Similarity=0.073  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Q 015473          121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGIS  187 (406)
Q Consensus       121 ~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~  187 (406)
                      ......++.+++..+..+.+++.|+.+......+.++++++++.++++++++..||+++.+.+.|+.
T Consensus       154 ~~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~  220 (222)
T TIGR00803       154 AVWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATF  220 (222)
T ss_pred             HHHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeE
Confidence            4556667788888999999999999999999999999999999999999999999999999998864

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=95.74  E-value=0.81  Score=39.73  Aligned_cols=130  Identities=15%  Similarity=0.170  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHHHHHHHHHH
Q 015473          211 IYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQ  290 (406)
Q Consensus       211 ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~l~i~~~aig  290 (406)
                      ++.+.+..+-++.+..+-++.+..  .+++.-.+.-...|.+........   .+++ ......+.+||.|+--+..++.
T Consensus         4 lla~~aG~~i~~q~~~N~~L~~~~--gs~~~as~i~~~~G~i~~~i~~~~---~~~~-~~~~~~~~p~w~~lGG~lG~~~   77 (138)
T PF04657_consen    4 LLALLAGALIALQAAFNGQLGKAL--GSPLVASFISFGVGFILLLIILLI---TGRP-SLASLSSVPWWAYLGGLLGVFF   77 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHHHHHHHH---hccc-ccchhccCChHHhccHHHHHHH
Confidence            455666667778888888877663  356656666566666655544432   2332 2222344566666543333333


Q ss_pred             HHHHHHHHHHhhhHHH-HHHhhHHHHHHHHHHHH-Hh---CCCccHHHHHHHHHHHHHHHH
Q 015473          291 GILSCFFLKYADAILK-KYSSTVATIFTGIASAV-LF---GHTLTMNFLLGISIVFISMHQ  346 (406)
Q Consensus       291 g~~v~~~~ky~~~i~k-~~a~~~~iv~t~lls~l-lf---ge~~t~~~~lG~~LVi~gv~l  346 (406)
                      -....+.+...+.... ......+++.+.++..+ +|   .++++...++|.++++.|+++
T Consensus        78 V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   78 VLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            3334444444443322 33334456677777765 44   378999999999999999864

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=95.40  E-value=0.21  Score=48.68  Aligned_cols=129  Identities=18%  Similarity=0.235  Sum_probs=94.8

Q ss_pred             HHHHHHHHhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHH-hhhhhHHHHH
Q 015473           46 VVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQ-AARNNVLLAV  124 (406)
Q Consensus        46 ~~~~~~~~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~-~~r~~~~~~v  124 (406)
                      +..+.+.-..|+-+-+      ++..++...++-.++...+.+...+..++..     .+.+   .|.. ++.-.+-+.+
T Consensus       181 L~fDgfTn~tQd~lf~------~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~-----~~av---~F~~~hp~~~~Di~l  246 (327)
T KOG1581|consen  181 LLFDGFTNATQDSLFK------KYKVSSLHMMFGVNLFSAILNGTYLILQGHL-----LPAV---SFIKEHPDVAFDILL  246 (327)
T ss_pred             HHHHhhHHhHHHHHhc------cCCccHhHHHHHHHHHHHHHHHHhhhcCCCC-----chHH---HHHHcChhHHHHHHH
Confidence            3334445555665543      3456788889999999998887776554431     2211   1221 1111123666


Q ss_pred             HHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhh
Q 015473          125 PAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISV  188 (406)
Q Consensus       125 pAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~l  188 (406)
                      -+.+.++..+..|+-++...+-++..+.-+.=++..++|.+..+++++..||.++.+.|.|+..
T Consensus       247 ~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l  310 (327)
T KOG1581|consen  247 YSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL  310 (327)
T ss_pred             HHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence            7777888888889999999999999999999999999999999999999999999999988765

>PRK13499 rhamnose-proton symporter; Provisional

Probab=95.37  E-value=0.25  Score=49.48  Aligned_cols=137  Identities=15%  Similarity=0.091  Sum_probs=81.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHHHH--
Q 015473          207 MGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLI--  284 (406)
Q Consensus       207 ~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~l~i--  284 (406)
                      ..|++..+++++++|--++-++| .|+-    .| +++|. ..+....++....-..+..+.-.+..+..+...+...  
T Consensus         6 ~~G~~~~~i~~~~~GS~~~p~K~-~k~w----~w-E~~W~-v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l   78 (345)
T PRK13499          6 ILGIIWHLIGGASSGSFYAPFKK-VKKW----SW-ETMWS-VGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFL   78 (345)
T ss_pred             HHHHHHHHHHHHHhhcccccccc-cCCC----ch-hHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHH
Confidence            46888889999998877766666 4542    12 22244 3333222111110011111111112222333333222  


Q ss_pred             --HHHHHHHHHHHHHHHHhh-hHHHHHHhhHHHHHHHHHHHHHhCCCc-------cHHHHHHHHHHHHHHHHhccc
Q 015473          285 --FNNAAQGILSCFFLKYAD-AILKKYSSTVATIFTGIASAVLFGHTL-------TMNFLLGISIVFISMHQFFSS  350 (406)
Q Consensus       285 --~~~aigg~~v~~~~ky~~-~i~k~~a~~~~iv~t~lls~llfge~~-------t~~~~lG~~LVi~gv~ly~~~  350 (406)
                        +.-++|++.....+||.+ +..-..++.++.+++++++.+++||..       ....++|.++++.|+.+....
T Consensus        79 ~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~A  154 (345)
T PRK13499         79 FGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRA  154 (345)
T ss_pred             HHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence              344678888889999987 444456677888999999999999754       235788999999999987763

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=95.33  E-value=0.23  Score=40.02  Aligned_cols=52  Identities=15%  Similarity=0.230  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHhhhHHH-HHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Q 015473          289 AQGILSCFFLKYADAILK-KYSSTVATIFTGIASAVLFGHTLTMNFLLGISIV  340 (406)
Q Consensus       289 igg~~v~~~~ky~~~i~k-~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LV  340 (406)
                      +.-.+.+.++|+.|-.+. ...+....+.+.++|.++|||++|..+++|+.+|
T Consensus        41 ~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   41 LSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            334566677777663332 4455678899999999999999999999999876

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=95.20  E-value=0.93  Score=44.01  Aligned_cols=130  Identities=18%  Similarity=0.226  Sum_probs=89.5

Q ss_pred             HHHHHHHhhHhHhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhHHHHHHH
Q 015473           47 VGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPA  126 (406)
Q Consensus        47 ~~~~~~~~~~~~l~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~vpA  126 (406)
                      ++.++.|+..+.+.|..+.|      +.+-..+.-+.-+.+|+.++........     ....    +..+....+..-+
T Consensus       154 l~la~sf~~Ygl~RK~~~v~------a~~g~~lE~l~l~p~al~yl~~l~~~~~-----~~~~----~~~~~~~LLv~aG  218 (293)
T COG2962         154 LALALSFGLYGLLRKKLKVD------ALTGLTLETLLLLPVALIYLLFLADSGQ-----FLQQ----NANSLWLLLVLAG  218 (293)
T ss_pred             HHHHHHHHHHHHHHHhcCCc------hHHhHHHHHHHHhHHHHHHHHHHhcCch-----hhhc----CCchHHHHHHHhh
Confidence            34466677777777776543      4344444444555566665554332110     0000    0112233444555


Q ss_pred             HHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcc
Q 015473          127 FLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQL  191 (406)
Q Consensus       127 lly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~  191 (406)
                      ..-++--.++-.|-+.+|.++.-++.+..|...-+++++++||+++..|+.+-++.-+|+++...
T Consensus       219 ~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~  283 (293)
T COG2962         219 LVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSI  283 (293)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            66667778888899999999999999999999999999999999999999999999999888743

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=95.07  E-value=0.16  Score=47.79  Aligned_cols=68  Identities=15%  Similarity=0.288  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhh
Q 015473          121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISV  188 (406)
Q Consensus       121 ~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~l  188 (406)
                      -....|+..++...+.|....+..|-+-+++..+.-+||.+.|+++++..++.+||++-.+.|.|...
T Consensus       243 ~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~  310 (337)
T KOG1580|consen  243 DLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA  310 (337)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence            45667777888899999999999999999999999999999999999999999999999999988765

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=93.96  E-value=0.14  Score=42.91  Aligned_cols=64  Identities=17%  Similarity=0.298  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhh-hHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHH
Q 015473          283 LIFNNAAQGILSCFFLKYAD-AILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQ  346 (406)
Q Consensus       283 ~i~~~aigg~~v~~~~ky~~-~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~l  346 (406)
                      ..+.+-.|.+.-.+.+..+| +.....+++++-++|.+.++++..|..+...++|+++|+.|+.+
T Consensus        47 pf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   47 PFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL  111 (113)
T ss_pred             HHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence            33444455555556667677 44445567899999999999999888999999999999999865

Many members are annotated as potential transmembrane proteins.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=93.70  E-value=0.47  Score=45.29  Aligned_cols=66  Identities=23%  Similarity=0.206  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcccccc
Q 015473          288 AAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSK  353 (406)
Q Consensus       288 aigg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~~~~  353 (406)
                      ++...+....+++.|+.+-.......+++|+++++++++.+++..+|++..+...|+.+.......
T Consensus        28 ~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~   93 (244)
T PF04142_consen   28 AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ   93 (244)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence            455666777889999888888888999999999999999999999999999999999987765444

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=93.18  E-value=3.7  Score=35.57  Aligned_cols=128  Identities=17%  Similarity=0.245  Sum_probs=76.9

Q ss_pred             HHHHHHHHHhhHhHh-hhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhHHHH
Q 015473           45 LVVGDCMLVGLQPIL-VYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLA  123 (406)
Q Consensus        45 l~~~~~~~~~~~~~l-~k~s~~~g~~~~~~~~vv~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~  123 (406)
                      +.+..-..-+.|..+ .++++.-|+    |....++.-....++...+....++....   . .        .+.++.+.
T Consensus         5 la~~aG~~i~~q~~~N~~L~~~~gs----~~~as~i~~~~G~i~~~i~~~~~~~~~~~---~-~--------~~~p~w~~   68 (138)
T PF04657_consen    5 LALLAGALIALQAAFNGQLGKALGS----PLVASFISFGVGFILLLIILLITGRPSLA---S-L--------SSVPWWAY   68 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCc----cHHHHHHHHHHHHHHHHHHHHHhcccccc---h-h--------ccCChHHh
Confidence            334444445566555 445443332    44445555666666665554443331110   0 0        12233455


Q ss_pred             HHHHHHHHHHHHHHHHHhccChHHHHHHhhh-HHHHHHHHHHH----HhCCCCCHHHHHHHHHHHHHHhh
Q 015473          124 VPAFLYAINNYLKFIMQLYFNPATVKMLSNL-KVLVIAVLLKI----IMRRRFSIIQWEALALLLIGISV  188 (406)
Q Consensus       124 vpAlly~~~n~L~f~al~~l~~~t~~vl~~~-k~l~talls~l----~Lkerls~~qwlal~ll~~GV~l  188 (406)
                      ..+++-...-.+..+....+.++...++.-+ +.+...++-.+    .-|+++++.|.+++++..+|+.+
T Consensus        69 lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   69 LGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             ccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            5667777777777888899988888766554 45555555554    57899999999999999999863

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.16  E-value=5.7  Score=35.03  Aligned_cols=133  Identities=14%  Similarity=0.135  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHHHHHHHH
Q 015473          209 AYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNA  288 (406)
Q Consensus       209 G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~l~i~~~a  288 (406)
                      .++..+.+..+..+.+..+-++.+..  .++..-...-+..|+........   +.++..........+||.|.--   .
T Consensus         6 ~ll~~i~aG~~l~~Q~~iN~qL~~~~--~spl~As~isf~vGt~~L~~l~l---~~~~~~~~a~~~~~pwW~~~GG---~   77 (150)
T COG3238           6 YLLFAILAGALLPLQAAINGRLARYL--GSPLLASLISFLVGTVLLLILLL---IKQGHPGLAAVASAPWWAWIGG---L   77 (150)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHHHHHH---HhcCCCchhhccCCchHHHHcc---c
Confidence            34556666677777788888876653  23433333323344443332222   2333322222234466666432   2


Q ss_pred             HHHHHHHHHH----HHhhhHHHHHHhhHHHHHHHHHHHHH-hC---CCccHHHHHHHHHHHHHHHHhcc
Q 015473          289 AQGILSCFFL----KYADAILKKYSSTVATIFTGIASAVL-FG---HTLTMNFLLGISIVFISMHQFFS  349 (406)
Q Consensus       289 igg~~v~~~~----ky~~~i~k~~a~~~~iv~t~lls~ll-fg---e~~t~~~~lG~~LVi~gv~ly~~  349 (406)
                      +|.+++..-.    |.............+++.+.++.-+= ||   .+++..-++|+++++.|+++...
T Consensus        78 lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~  146 (150)
T COG3238          78 LGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR  146 (150)
T ss_pred             hhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence            2333333222    22223333344445666666666553 33   67999999999999999777654

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=90.81  E-value=1.6  Score=41.92  Aligned_cols=66  Identities=20%  Similarity=0.145  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHhh-hHHHHHHhhHHHHHHHHHHHH-HhCCCc-----cHHHHHHHHHHHHHHHHhcccccc
Q 015473          288 AAQGILSCFFLKYAD-AILKKYSSTVATIFTGIASAV-LFGHTL-----TMNFLLGISIVFISMHQFFSSLSK  353 (406)
Q Consensus       288 aigg~~v~~~~ky~~-~i~k~~a~~~~iv~t~lls~l-lfge~~-----t~~~~lG~~LVi~gv~ly~~~~~~  353 (406)
                      +.|+++.-.++|..+ ++--....+.+.+.....|-+ +||.++     ++.-.+|+++++.|..+|...+.+
T Consensus        66 ~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~  138 (254)
T PF07857_consen   66 ATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSE  138 (254)
T ss_pred             hcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCC
Confidence            456665556666544 222234444555666666644 676543     456789999999999988764433

The region concerned is approximately 280 residues long.

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=89.16  E-value=6.5  Score=39.25  Aligned_cols=138  Identities=14%  Similarity=0.136  Sum_probs=76.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHHH-
Q 015473          207 MGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFL--YGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLL-  283 (406)
Q Consensus       207 ~~G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l--~~~g~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~l~-  283 (406)
                      ..|+++..++++++|..++=.+|. |+-    -| .++|+  .+++.++. |.+.  +...-|.-.+.....+..++.. 
T Consensus         6 i~Gii~h~iGg~~~~sfy~P~kkv-k~W----sW-Es~Wlv~gi~swli~-P~~~--a~l~ip~~~~i~~~~~~~~l~~~   76 (344)
T PF06379_consen    6 ILGIIFHAIGGFASGSFYVPFKKV-KGW----SW-ESYWLVQGIFSWLIV-PWLW--ALLAIPDFFSIYSATPASTLFWT   76 (344)
T ss_pred             HHHHHHHHHHHHHhhhhccchhhc-CCc----cH-HHHHHHHHHHHHHHH-HHHH--HHHhCCcHHHHHHhCChhHHHHH
Confidence            468888888888888767666664 431    12 34443  22333321 2211  1222332112233333222222 


Q ss_pred             ---HHHHHHHHHHHHHHHHHhh-hHHHHHHhhHHHHHHHHHHHHHhC-------CCccHHHHHHHHHHHHHHHHhccccc
Q 015473          284 ---IFNNAAQGILSCFFLKYAD-AILKKYSSTVATIFTGIASAVLFG-------HTLTMNFLLGISIVFISMHQFFSSLS  352 (406)
Q Consensus       284 ---i~~~aigg~~v~~~~ky~~-~i~k~~a~~~~iv~t~lls~llfg-------e~~t~~~~lG~~LVi~gv~ly~~~~~  352 (406)
                         =+.-++||+.-+..+||.+ +.--+.+.-+..++.+++--++.|       .+-....++|.++++.|+.+..+...
T Consensus        77 ~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~  156 (344)
T PF06379_consen   77 FLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGS  156 (344)
T ss_pred             HHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHH
Confidence               2345689999999999987 333334444455666666555433       23345789999999999998877543


Q ss_pred             c
Q 015473          353 K  353 (406)
Q Consensus       353 ~  353 (406)
                      +
T Consensus       157 ~  157 (344)
T PF06379_consen  157 M  157 (344)
T ss_pred             h
Confidence            3

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.93  E-value=0.27  Score=48.31  Aligned_cols=70  Identities=13%  Similarity=0.128  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHh
Q 015473          278 KATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQF  347 (406)
Q Consensus       278 ~~~~l~i~~~aigg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly  347 (406)
                      ++.|.-++..++|-+.-...+-+++.++..+..+++++.+++++..++.|.+++.-.+|.++.+.|..+-
T Consensus        65 ~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~i  134 (335)
T KOG2922|consen   65 PLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTI  134 (335)
T ss_pred             HHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEE
Confidence            3456667788888888888889999999999999999999999999999999999999999999987643

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=87.07  E-value=4  Score=38.36  Aligned_cols=107  Identities=11%  Similarity=0.129  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-Hhhccc--CCCCCcchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHH
Q 015473           73 PISVNFLTEMTKVLFAIVMLFF-QARHQK--VGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVK  149 (406)
Q Consensus        73 ~~~vv~~~E~~kl~i~~~ll~~-~~~~~~--~~~~~~l~~~~~~~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~  149 (406)
                      -...+|..+++.+-+-+.+-+. +.....  ..+   ++.       -....+.+.+++-++-.++.=|-++-++..+++
T Consensus       185 d~dtmfYnNllslPiL~~~s~~~edws~~n~ann---l~~-------d~l~am~ISgl~svgiSy~saWcvrVtSSTtyS  254 (309)
T COG5070         185 DFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANN---LSV-------DSLMAMFISGLCSVGISYCSAWCVRVTSSTTYS  254 (309)
T ss_pred             hhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcC---CCh-------HHHHHHHHHHHHHhhhhhccceeEeehhhhHHH
Confidence            3456789998887766554332 222111  101   110       011246677788888888888899999999999


Q ss_pred             HHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhh
Q 015473          150 MLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVN  189 (406)
Q Consensus       150 vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv  189 (406)
                      ++..+.-...++-..+++++..++....+++++++..++-
T Consensus       255 MvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iY  294 (309)
T COG5070         255 MVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIY  294 (309)
T ss_pred             HHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998888765543

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=86.98  E-value=0.33  Score=46.06  Aligned_cols=90  Identities=18%  Similarity=0.237  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhHHH
Q 015473           78 FLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVL  157 (406)
Q Consensus        78 ~~~E~~kl~i~~~ll~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~vl~~~k~l  157 (406)
                      ++-..+.++++...+-..+.     +++.         .++.++-.+|++...+.|...+.+-+....+|.-.++|+-.+
T Consensus       182 iLPqAiGMv~~ali~~~~~~-----~~~~---------~K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgVi  247 (288)
T COG4975         182 ILPQAIGMVIGALILGFFKM-----EKRF---------NKYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVI  247 (288)
T ss_pred             hhHHHHHHHHHHHHHhhccc-----ccch---------HHHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheee
Confidence            44455677777665544332     1110         144567899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCHHHHHHHHH
Q 015473          158 VIAVLLKIIMRRRFSIIQWEALAL  181 (406)
Q Consensus       158 ~talls~l~Lkerls~~qwlal~l  181 (406)
                      ...+-..++||||=++++|..+..
T Consensus       248 isTiGGIl~L~ekKtkkEm~~v~i  271 (288)
T COG4975         248 ISTIGGILFLGEKKTKKEMVYVII  271 (288)
T ss_pred             eeecceEEEEeccCchhhhhhhhh
Confidence            999999999999999999876643

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.79  E-value=4.3  Score=39.96  Aligned_cols=115  Identities=10%  Similarity=0.086  Sum_probs=80.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCCCCCcchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHH
Q 015473           71 FSPISVNFLTEMTKVLFAIVMLFFQARHQ-KVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVK  149 (406)
Q Consensus        71 ~~~~~vv~~~E~~kl~i~~~ll~~~~~~~-~~~~~~~l~~~~~~~~~r~~~~~~vpAlly~~~n~L~f~al~~l~~~t~~  149 (406)
                      ++....++..+++.+.......+..+... ...+.+.++      ...-...+.+-.++-.+-|++.++..+..++.++.
T Consensus       185 l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~------~~~~~~~~~lScv~gf~isy~s~~ct~~~SAtT~t  258 (314)
T KOG1444|consen  185 LNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWS------DSSVLVVMLLSCVMGFGISYTSFLCTRVNSATTTT  258 (314)
T ss_pred             ccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhccccc------chhHHHHHHHHHHHHHHHHHHHHHHHhhcccccee
Confidence            34555677777777777766654443211 000111110      00112345666677889999999999999999999


Q ss_pred             HHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhcc
Q 015473          150 MLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQL  191 (406)
Q Consensus       150 vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~  191 (406)
                      ++.-...+.|.+-..++.+++.++...+++.++++|-++-+.
T Consensus       259 ivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~  300 (314)
T KOG1444|consen  259 IVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSY  300 (314)
T ss_pred             ehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhh
Confidence            999777888888888888999999999999999888776543

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=85.65  E-value=0.32  Score=46.10  Aligned_cols=125  Identities=11%  Similarity=0.011  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHHHH----
Q 015473          209 AYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLI----  284 (406)
Q Consensus       209 G~ll~L~a~~~sala~V~~ekllk~~~~~s~~~~~~~l~~~g~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~l~i----  284 (406)
                      ++++.|+-++.||.......|. +    ..|..|..-+.+.+.++.+...+    +..|       .+++..++.-    
T Consensus         3 ~~liaL~P~l~WGsip~v~~k~-G----G~p~qQ~lGtT~GALifaiiv~~----~~~p-------~~T~~~~iv~~isG   66 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANKF-G----GKPYQQTLGTTLGALIFAIIVFL----FVSP-------ELTLTIFIVGFISG   66 (288)
T ss_pred             hHHHHHHHHHHhcccceeeeec-C----CChhHhhhhccHHHHHHHHHHhe----eecC-------ccchhhHHHHHHhh
Confidence            4567777788888766655553 2    34555666666555555544332    2333       1222222221    


Q ss_pred             HHHHHHHHHHHHHHHHhhh-HHHHHHhhHHHHHHHHHHHHHhCCCccHHHH----HHHHHHHHHHHHhcc
Q 015473          285 FNNAAQGILSCFFLKYADA-ILKKYSSTVATIFTGIASAVLFGHTLTMNFL----LGISIVFISMHQFFS  349 (406)
Q Consensus       285 ~~~aigg~~v~~~~ky~~~-i~k~~a~~~~iv~t~lls~llfge~~t~~~~----lG~~LVi~gv~ly~~  349 (406)
                      +.-++|+..---.+++.+. ......+.++.+-+.+++++.|||..+..++    +..++++.|+++..+
T Consensus        67 ~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~  136 (288)
T COG4975          67 AFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSK  136 (288)
T ss_pred             hHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeee
Confidence            2334566555555565442 2334556688999999999999999887654    345566678887655

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=84.48  E-value=0.54  Score=45.18  Aligned_cols=62  Identities=16%  Similarity=0.112  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcccc
Q 015473          290 QGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSL  351 (406)
Q Consensus       290 gg~~v~~~~ky~~~i~k~~a~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~~  351 (406)
                      |-..+.+.++|.+-.-....+..++++++++++++++|+.|..-.+|..+-+.|+.+-.+|+
T Consensus       110 gvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp  171 (346)
T KOG4510|consen  110 GVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP  171 (346)
T ss_pred             HHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence            33445566666432222234447899999999999999999999999999999998888765

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=83.40  E-value=3  Score=34.43  Aligned_cols=69  Identities=13%  Similarity=0.116  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccChHHH-HHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhh
Q 015473          120 VLLAVPAFLYAINNYLKFIMQLYFNPATV-KMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISV  188 (406)
Q Consensus       120 ~~~~vpAlly~~~n~L~f~al~~l~~~t~-~vl~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~l  188 (406)
                      +.|.+|-+++-....++|.-+++.|.+.+ -+.+++...||+++...+-.|....+-.++..+..+|+.+
T Consensus        53 w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~L  122 (125)
T KOG4831|consen   53 WEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWL  122 (125)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhh
Confidence            57999999999999999999999987766 4667889999999999876666667777787777777754

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	406
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.31
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.15
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	97.97
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	97.62

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.31  E-value=4.7e-06  Score=68.52  Aligned_cols=72  Identities=15%  Similarity=0.194  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccChHHHHHH-hhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCC
Q 015473          122 LAVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRS  193 (406)
Q Consensus       122 ~~vpAlly~~~n~L~f~al~~l~~~t~~vl-~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~  193 (406)
                      ...-.+.|.+...+...+++++|.+....+ ..+.|+.+++++++++||++++.||+++.+..+|++.+...+
T Consensus        33 ~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            344456788999999999999999999888 899999999999999999999999999999999999986543

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.15  E-value=2.9e-06  Score=72.50  Aligned_cols=72  Identities=15%  Similarity=0.194  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccChHHHHHH-hhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhccCC
Q 015473          122 LAVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRS  193 (406)
Q Consensus       122 ~~vpAlly~~~n~L~f~al~~l~~~t~~vl-~~~k~l~talls~l~Lkerls~~qwlal~ll~~GV~lv~~~~  193 (406)
                      ..+-.+.|.+...+++.+++++|++....+ ..+.|+++++++++++||++++.||+++++.++|++++...+
T Consensus        33 ~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             -CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            344456788999999999999999988777 899999999999999999999999999999999999986543

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=97.97  E-value=8e-06  Score=69.79  Aligned_cols=66  Identities=17%  Similarity=0.152  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHH-hhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015473          285 FNNAAQGILSCFFLKYADAILKKYS-STVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS  350 (406)
Q Consensus       285 ~~~aigg~~v~~~~ky~~~i~k~~a-~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~  350 (406)
                      +..+++-.+....+|+.+....... +.+.+++++++|+++|||++|+.+++|+++|+.|+++.+..
T Consensus        38 ~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~  104 (137)
T 2i68_A           38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (137)
T ss_dssp             HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            3444555666777888776655444 78999999999999999999999999999999999988764

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=97.62  E-value=0.00035  Score=57.19  Aligned_cols=64  Identities=17%  Similarity=0.161  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHH-hhHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015473          287 NAAQGILSCFFLKYADAILKKYS-STVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS  350 (406)
Q Consensus       287 ~aigg~~v~~~~ky~~~i~k~~a-~~~~iv~t~lls~llfge~~t~~~~lG~~LVi~gv~ly~~~  350 (406)
                      .++.-.+....+|+.|....... ..+++++++++++++|||++|..+++|+.+++.|+.+.+..
T Consensus        40 ~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            34444566678888875555443 68899999999999999999999999999999999987664

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00