Citrus Sinensis ID: 015490

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400------
Protein Sequence
MGSRSRNEESHNLQKYGVPLYGAGWVPYDQVIRSTHKPPKQQDDDDKEEDQHGSKDEAVADKSDDIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLNLWIIIFILLLAMAAYFVKAKGIIP
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEEEccccEEEccccccccccccccccccccccccccccccccccccccEEEEccccccEEEEEcccEEEEEEEcccccccccccEEEEccccccEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEccccccEEEEEccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEccccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEcccccccccEEEEEEEcccccccccEEEEEEccccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEcccccEEccccccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEcccccEEEEEEEHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHcccccccEEEEEEcccccEEEccccccEEEEcccccEEEccccccEEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccccccEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEcccccccEEEEEEccccccccEEEEEEEcccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEccccEEEEEEccccEEEEcccccc
Coil and Loop (DISEMBL)
mgsrsrneeshnlqkygvplygagwvpydqvirsthkppkqqddddkeedqhgskdeavadksddirRNYYVVLAggggagnsgiRNAVLLSHfdfasnslsdqpvaelrtdsdlpyrmaihphgDGIICALQNscrlfewdeVENTEIRRLGVKISEKVLSQLENVGQQLAltfdsegtifaagsengnlrvfkwpsLEIILNESeahasvkdlsfspdgkflvslgnrgpgrvwdlassavatplakendelfascrfsplnnedYVLYIAAITDRGASIVTWNTTtwkrirtkqvvrepvssfnvsadgKLLAVGtasgdisiidsssLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEdkkksgglnLWIIIFILLLAMAAYFVKAKGIIP
Flexible Loop (DISEMBL)
mgsrsrneeshnlqKYGVPLYGAGWVPYDQVIRSTHkppkqqddddkeedqhgskdeavadksddirRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAgsengnlrvFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITdrgasivtwntttwkrirtkqvvrepvssfnvsadgkLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTViedkkksgglnLWIIIFILLLAMAAYFVKAKGIIP
Low Complexity Region (SEG)
MGSRSRNEESHNLQKYGVPLYGAGWVPYDQVIRSTHkppkqqddddkeedqHGSKDEAVADKSDDIRRNYYVVLaggggagNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAsgdisiidsssLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGlnlwiiifilllAMAAYFVKAKGIIP
Disordered region (IsUnstruct)
*************QKYGVPLYGAGWVPYDQVI*********************************IRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASN***********TDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLNLWIIIFILLLAMAAYFVKAKGI**
Disordered Region (DISOPRED)
***********NLQKYGVPLYGAGWVPYDQV***************KEEDQHGSKDEAVADKSDDIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLNLWIIIFILLLAMAAYFVKAKGIIP
Disordered Region (DISEMBL)
***********NLQKYGVPLYGAGWVPYDQVIRST**********************AVADKSDDIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLNLWIIIFILLLAMAAYFVKAKGIIP
Disordered Region (DISPRO)
**************KYGVPLYGAGWVPYDQVIRSTHKPPKQQDDDDKEEDQHGSKDEAVADKSDDIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLNLWIIIFILLLAMAAYFVKAKGIIP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSRSRNEESHNLQKYGVPLYGAGWVPYDQVIRSTHKPPKQQDDDDKEEDQHGSKDEAVADKSDDIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLNLWIIIFILLLAMAAYFVKAKGIIP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	406	2.2.26 [Sep-21-2011]
Q39221	393	SEC12-like protein 2 OS=A	yes	no	0.948	0.979	0.506	9e-96
Q8GYE0	398	SEC12-like protein 1 OS=A	no	no	0.798	0.814	0.292	1e-37
Q9HCU5	417	Prolactin regulatory elem	yes	no	0.539	0.525	0.288	3e-17
Q9WUQ2	417	Prolactin regulatory elem	yes	no	0.591	0.575	0.266	3e-17
Q9WTV0	417	Prolactin regulatory elem	yes	no	0.591	0.575	0.258	6e-16
Q9C270	899	Periodic tryptophan prote	N/A	no	0.588	0.265	0.259	4e-11
P49695	742	Probable serine/threonine	no	no	0.463	0.253	0.291	9e-10
Q8YTC2	1258	Uncharacterized WD repeat	no	no	0.600	0.193	0.223	1e-09
O74319	642	Transcription initiation	yes	no	0.421	0.266	0.308	4e-09
Q15542	800	Transcription initiation	no	no	0.490	0.248	0.266	4e-09

>sp|Q39221|STLP2_ARATH SEC12-like protein 2 OS=Arabidopsis thaliana GN=STL2P PE=1 SV=4

 Score =  350 bits (899), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 205/405 (50%), Positives = 275/405 (67%), Gaps = 20/405 (4%)

Query: 5   SRNEESHNLQKYGVPLYGAGWVPYDQVIRSTHKPPKQQDDDDKEEDQHGSKDEAVADKSD 64
           +   +  N+Q YGVP+Y A W+P   V RS     K   D +K ED   S   + + +S 
Sbjct: 6   TETNQPSNMQTYGVPIYAADWIPEVDV-RS-----KIIMDPEKSEDDDESSSSSSSSRS- 58

Query: 65  DIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPH 124
                  +VL+GGGG G SGI N +L+   D  +NSLS+QP+  L   SDLPYRMA+HP 
Sbjct: 59  ------CIVLSGGGGEGRSGISNVILICRVDLNTNSLSEQPLGRLVVGSDLPYRMAVHPR 112

Query: 125 GDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAA 184
             G+ICAL NSC+LF W+++ + E  + G   SE+V+ +L +VGQQLAL F+ EG++ AA
Sbjct: 113 EGGLICALPNSCKLFHWEDIMSREDNQAGE--SEEVIKELRDVGQQLALAFNPEGSVLAA 170

Query: 185 GSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGP-GRVWDLASSAV 243
           G+E+G LRVFKWPS+  +LNES+AH+SVK L+FS  G+FLVSLG  GP  RVWD+ +SA 
Sbjct: 171 GAEDGTLRVFKWPSMNTLLNESQAHSSVKCLTFSESGQFLVSLG--GPVCRVWDVNASAA 228

Query: 244 ATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPV 303
              L+KE DE+FASCRFS  +  + VLYIAA T+RG SI+T +T  WKR  +K + +  +
Sbjct: 229 VASLSKEKDEMFASCRFSVDSAGNEVLYIAANTERGGSIITCDTKLWKRKWSKPIKKNSI 288

Query: 304 SSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASM 363
           S+FNVSADGKLLA+GT  GD+ I++S+ +Q    VKKAHLG+VTAL FS DSR LVS S 
Sbjct: 289 SAFNVSADGKLLAIGTLEGDVLILESTRMQTIQVVKKAHLGLVTALTFSPDSRGLVSVSF 348

Query: 364 DSSVRVTVIEDKKKSGGLNLW--IIIFILLLAMAAYFVKAKGIIP 406
           DS  R+T+IE K    G+  W  +++ +LL  +A Y++KAKGIIP
Sbjct: 349 DSRARLTMIEQKGDKPGVRWWLLVLLIVLLYVVAYYYMKAKGIIP 393

Required for the formation or budding of transport vesicles from the ER.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8GYE0|PHF1_ARATH SEC12-like protein 1 OS=Arabidopsis thaliana GN=PHF1 PE=2 SV=2

 Score =  157 bits (397), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 174/339 (51%), Gaps = 15/339 (4%)

Query: 67  RRNYYVVLAGGGGAGNSGIRNAVLLSHFDF--ASNSLSDQPVAE--LRTDSDLPYRMAIH 122
           ++  +V++A       S + +  LL+ F F   + SLS  P+A   L+     P  +++H
Sbjct: 23  KKVNWVLIAKASKRRGSSVSSPALLNIFSFDPITASLSSSPLATHTLKDSDGDPVAVSVH 82

Query: 123 PHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTI 181
           P GD  +C+  +  C+LFE            G+ I  K L  L+N G Q  + F  +G+ 
Sbjct: 83  PGGDYFVCSTSKGGCKLFELVGGAT------GITILAKELLPLQNAGLQKCMAFSFDGSK 136

Query: 182 FAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASS 241
            A G  +G LR+ +WP+L +IL+E +AH S++D+ FS D +FL +    G  R+W     
Sbjct: 137 LAVGGVDGCLRIMEWPNLSVILDEPKAHKSIRDMDFSLDSEFLATTSTDGSARIWKAEDG 196

Query: 242 AVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVRE 301
              + L +  DE    CRFS    + + L+ AA       +  ++ +TWK++  K++ R+
Sbjct: 197 FPLSTLERSGDENIELCRFSKDGTKPF-LFCAAQRGDTPMVNVYDISTWKKLGFKKLSRK 255

Query: 302 PVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLG-IVTALAFSYDSRALVS 360
             S+  VS DGK +A+G   GD+S+ +  ++++    K+ HLG  + +L F    R +++
Sbjct: 256 TASTMAVSLDGKYIALGGKDGDVSVAEVKTMEIYHYSKRLHLGQSIASLEFCPSERVMLT 315

Query: 361 ASMDSSVRVTVIEDKKKSGGLNLWIIIFILLLA--MAAY 397
            S +    VT +   K+     ++ ++F L +A  +AAY
Sbjct: 316 TSSEWGEMVTKLTVPKEWKEWQIYALLFCLFMASVIAAY 354

Involved in Pi uptake by facilitating the trafficking of PHT1-1/PHT1;1 from the endoplasmic reticulum to the plasma membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9HCU5|PREB_HUMAN Prolactin regulatory element-binding protein OS=Homo sapiens GN=PREB PE=1 SV=2

 Score = 90.1 bits (222), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 123/263 (46%), Gaps = 44/263 (16%)

Query: 170 QLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGN 229
           Q  + F+ + T+ A G  +G +RV+K PSLE +L        ++DL+  PDGK LV++G 
Sbjct: 157 QKVVCFNHDNTLLATGGTDGYVRVWKVPSLEKVLEFKAHEGEIEDLALGPDGK-LVTVGR 215

Query: 230 RGPGRVWDLASSAVATPLA-KENDELFAS-------CRFS--PLNNEDYVLYIAAITDR- 278
                VW      + T L  +EN   F+S       CRF   P       L+   I  + 
Sbjct: 216 DLKASVWQ--KDQLVTQLHWQENGPTFSSTPYRYQACRFGQVPDQPAGLRLFTVQIPHKR 273

Query: 279 -----GASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQ 333
                   +  W+ + +  +RTK    E VS  +VS  G  L +GT +G ++I  + SLQ
Sbjct: 274 LRQPPPCYLTAWDGSNFLPLRTKSCGHEVVSCLDVSESGTFLGLGTVTGSVAIYIAFSLQ 333

Query: 334 VRTAVKKAHLGIVTALAF------------SYDSRALVSASMDSSVRVTVIEDKKKSGGL 381
               V++AH  +VT +AF            S+++ AL S ++DS  ++ ++  ++    +
Sbjct: 334 CLYYVREAHGIVVTDVAFLPEKGRGPELLGSHET-ALFSVAVDSRCQLHLLPSRRS---V 389

Query: 382 NLW---------IIIFILLLAMA 395
            +W         II+ ILLL  A
Sbjct: 390 PVWLLLLLCVGLIIVTILLLQSA 412

Was first identified based on its probable role in the regulation of pituitary gene transcription. Binds to the prolactin gene (PRL) promoter and seems to activate transcription (By similarity). Guanine nucleotide exchange factor that activates SARA2. Required for the formation of COPII transport vesicles from the ER.

Homo sapiens (taxid: 9606)

>sp|Q9WUQ2|PREB_MOUSE Prolactin regulatory element-binding protein OS=Mus musculus GN=Preb PE=1 SV=1

 Score = 89.7 bits (221), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 125/278 (44%), Gaps = 38/278 (13%)

Query: 152 LGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHAS 211
           L VK  E V +   N   Q  + F+ + T+ A G  +G++RV+K PSLE +L        
Sbjct: 139 LKVKNLEAVQTDFSNEPLQKVVCFNHDNTLLATGGTDGHVRVWKVPSLEKVLEFKAHEGE 198

Query: 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT------PLAKENDELFASCRFSPLNN 265
           + DL+  PDGK LV++G      VW               P +      + +CRF  + +
Sbjct: 199 IGDLTLGPDGK-LVTVGWDFKASVWQKDQLVTQLQWQENGPASSNTPYRYQACRFGQVPD 257

Query: 266 E--DYVLYIAAITDR------GASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAV 317
           +     L+   I  +         +  W+++T+  +RT+    E +S  +VS  G  L +
Sbjct: 258 QLGGLRLFTVQIPHKRLRQPPPCYLTAWDSSTFLPLRTRSCGHEVISCLSVSDSGTFLGL 317

Query: 318 GTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDS-----------RALVSASMDSS 366
           GT +G ++I  + SLQ    VK+AH  +VT + F  +             AL S ++DS 
Sbjct: 318 GTVTGSVAIYIAFSLQRLYYVKEAHGIVVTDVTFLPEKGCGPKLLGPHETALFSVAVDSR 377

Query: 367 VRVTVIEDKKKSGGLNLW---------IIIFILLLAMA 395
            ++ ++  ++    + +W         II+ ILLL  A
Sbjct: 378 CQLHLLPSRRS---VPVWLLLLLCVGLIIVTILLLQTA 412

Was first identified based on its probable role in the regulation of pituitary gene transcription. Binds to the prolactin gene (PRL) promoter and seems to activate transcription (By similarity). Guanine nucleotide exchange factor that activates SARA2. Required for the formation of COPII transport vesicles from the ER.

Mus musculus (taxid: 10090)

>sp|Q9WTV0|PREB_RAT Prolactin regulatory element-binding protein OS=Rattus norvegicus GN=Preb PE=2 SV=2

 Score = 85.9 bits (211), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 123/278 (44%), Gaps = 38/278 (13%)

Query: 152 LGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHAS 211
           L VK  E V +       Q  + F+ + T+ A G  +G++RV+K PSLE +L        
Sbjct: 139 LKVKNLEAVQTDFSTEPLQKVVCFNHDNTLLATGGSDGHVRVWKVPSLEKVLEFKAHEGE 198

Query: 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT------PLAKENDELFASCRFSPLNN 265
           + DL+  PDGK LV++G      VW               P +      + +CRF  + +
Sbjct: 199 IGDLALGPDGK-LVTVGWDFKASVWQKDQLVTQLQWQENGPTSSNTPYRYQACRFGQVPD 257

Query: 266 ED--YVLYIAAITDR------GASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAV 317
           +     L+   I  +         +  W+++T+  ++T+    E +S   VS  G  L +
Sbjct: 258 QPGGLRLFTVQIPHKRLRQPPPCYLTAWDSSTFLPLQTRSCGHEVISCLTVSESGTFLGL 317

Query: 318 GTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDS-----------RALVSASMDSS 366
           GT +G ++I  + SLQ    VK+AH  +VT + F  +             AL S ++DS 
Sbjct: 318 GTVTGSVAIYIAFSLQRLYYVKEAHGIVVTDVTFLPEKGCGPKLLGPHETALFSVAVDSR 377

Query: 367 VRVTVIEDKKKSGGLNLW---------IIIFILLLAMA 395
            ++ ++  ++    + +W         II+ ILLL  A
Sbjct: 378 CQLHLLPSRRS---VPVWLLLLLCVGLIIVTILLLQSA 412

Was first identified based on its probable role in the regulation of pituitary gene transcription. Binds to the prolactin gene (PRL) promoter and seems to activate transcription. Guanine nucleotide exchange factor that activates SARA2. Required for the formation of COPII transport vesicles from the ER.

Rattus norvegicus (taxid: 10116)

>sp|Q9C270|PWP2_NEUCR Periodic tryptophan protein 2 homolog OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=B18D24.40 PE=3 SV=1

 Score = 69.7 bits (169), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 115/262 (43%), Gaps = 23/262 (8%)

Query: 120 AIHPHGDGIICALQNSCR-LFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSE 178
           A HP  + ++    N    L+E  +     I  L +  +E     +   G+ LA      
Sbjct: 261 AFHPESNLLVAGFSNGIFGLYEMPDFN--MIHTLSISQNEIDFVTINKSGEWLAF----- 313

Query: 179 GTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDL 238
                  S+ G L V++W S   IL +     S+  L +SPDG+ +V++ + G  +VWD 
Sbjct: 314 -----GASKLGQLLVWEWQSESYILKQQGHFDSMNSLVYSPDGQRIVTVADDGKIKVWDT 368

Query: 239 ASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQV 298
            S        +    + A C FS   N   VL+ +++     SI  W+   ++  RT   
Sbjct: 369 ESGFCIVTFTEHTSGITA-CEFSKKGN---VLFTSSLD---GSIRAWDLIRYRNFRTFTA 421

Query: 299 V-REPVSSFNVSADGKLLAVGTA-SGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSR 356
             R   S   V   G+++A G+  S DI I    + Q+   +   H G V++LAF+ +  
Sbjct: 422 PERLSFSCMAVDPSGEIVAAGSVDSFDIHIWSVQTGQLLDRL-SGHEGPVSSLAFAPNGG 480

Query: 357 ALVSASMDSSVRVTVIEDKKKS 378
            LVS S D + R+  I ++ ++
Sbjct: 481 LLVSGSWDRTARIWSIFNRTQT 502

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1

 Score = 65.1 bits (157), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 93/199 (46%), Gaps = 11/199 (5%)

Query: 172 ALTFDSEGTIFAAGSENGNLRVFKWPSLE-IILNESEAHASVKDLSFSPDGKFLVSLGNR 230
           A+ F  +G + A+GS++  +R++   + E   + E   H  V D++FSPDG  + S    
Sbjct: 506 AVAFSPDGALLASGSDDATVRLWDVAAAEERAVFEGHTH-YVLDIAFSPDGSMVASGSRD 564

Query: 231 GPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW 290
           G  R+W++A+      L    D ++A   FSP  +      + A   R  +I  W+  T 
Sbjct: 565 GTARLWNVATGTEHAVLKGHTDYVYA-VAFSPDGS------MVASGSRDGTIRLWDVATG 617

Query: 291 KRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALA 350
           K     Q   E V S   S DG +L  G+ S  + + D +S +      + H   V A+A
Sbjct: 618 KERDVLQAPAENVVSLAFSPDGSMLVHGSDS-TVHLWDVASGEALHTF-EGHTDWVRAVA 675

Query: 351 FSYDSRALVSASMDSSVRV 369
           FS D   L S S D ++R+
Sbjct: 676 FSPDGALLASGSDDRTIRL 694

May play a regulatory role during the complex growth cycle and in secondary metabolite production.

Thermomonospora curvata (taxid: 2020)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score = 64.7 bits (156), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 111/264 (42%), Gaps = 20/264 (7%)

Query: 106  VAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE 165
            ++ L   +D  Y +A  P    +  A  +S             +R   +   +     LE
Sbjct: 971  ISSLEGHTDFIYGIAFSPDSQTLASASTDS------------SVRLWNISTGQCFQILLE 1018

Query: 166  NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLV 225
            +     A+ F  +G I A GS +  ++++   + + +   SE    +  +++SPDG+ L 
Sbjct: 1019 HTDWVYAVVFHPQGKIIATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSPDGQLLA 1078

Query: 226  SLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTW 285
            S       R+WD  +      L   ++ ++++  FSP N E     I A      ++  W
Sbjct: 1079 SASADQSVRLWDCCTGRCVGILRGHSNRVYSAI-FSP-NGE-----IIATCSTDQTVKIW 1131

Query: 286  NTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGI 345
            +    K ++T       V     S DGK+LA  +    + I D ++ +    +   H  +
Sbjct: 1132 DWQQGKCLKTLTGHTNWVFDIAFSPDGKILASASHDQTVRIWDVNTGKCH-HICIGHTHL 1190

Query: 346  VTALAFSYDSRALVSASMDSSVRV 369
            V+++AFS D   + S S D +VR+
Sbjct: 1191 VSSVAFSPDGEVVASGSQDQTVRI 1214

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|O74319|TAF73_SCHPO Transcription initiation factor TFIID subunit taf73 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=taf73 PE=1 SV=1

 Score = 63.2 bits (152), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 88/185 (47%), Gaps = 14/185 (7%)

Query: 186 SENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSA-VA 244
           SE+G  R++   +   I+  +  +A + D+ FSP G +  +  +    R+WD+  +A + 
Sbjct: 422 SEDGFTRLWSKDTKSTIVKYAGHNAPIWDVQFSPFGYYFATASHDQTARLWDVEHAAPLR 481

Query: 245 TPLAKENDELFASC-RFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPV 303
             +  +ND     C  F P  N  Y+    A      +   W+  T   +R       PV
Sbjct: 482 VFVGHQND---VDCVSFHP--NAAYL----ATGSSDHTTRMWDVRTGGTVRVFNAHHSPV 532

Query: 304 SSFNVSADGKLLAVGTASGDISIID-SSSLQVRTAVKKAHLGIVTALAFSYDSRALVSAS 362
           S+  +SADG  LA    SG I + D  SS Q  + VK  H  IV +L+FSYD++ LVS  
Sbjct: 533 SALCMSADGLSLASADESGIIKVWDLRSSNQHVSFVK--HSSIVYSLSFSYDNKILVSGG 590

Query: 363 MDSSV 367
            D+ V
Sbjct: 591 ADTDV 595

TAFs are components of the transcription factor IID (TFIID) complex that are essential for mediating regulation of RNA polymerase transcription. Regulates the genes involved in ubiquitin-dependent proteolysis during the progression of M-phase of mitosis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q15542|TAF5_HUMAN Transcription initiation factor TFIID subunit 5 OS=Homo sapiens GN=TAF5 PE=1 SV=3

 Score = 63.2 bits (152), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 99/225 (44%), Gaps = 26/225 (11%)

Query: 156 ISEKVLSQLE----NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHAS 211
           + EK  S+L+    + G     +F  +     + SE+G +R++   +   ++     +  
Sbjct: 528 MDEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYP 587

Query: 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFA------SC-RFSPLN 264
           V D  FSP G + VS G+    R+W   ++    PL      +FA      +C RF P  
Sbjct: 588 VWDTQFSPYGYYFVSGGHDRVARLW---ATDHYQPL-----RIFAGHLADVNCTRFHP-- 637

Query: 265 NEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDI 324
           N +YV   +A  DR  ++  W+      +R     + P+ S   S +G+ LA G   G +
Sbjct: 638 NSNYVATGSA--DR--TVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRV 693

Query: 325 SIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
            + D     +     K H   V +L FS D   L S SMD++VR+
Sbjct: 694 LLWDIGH-GLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRL 737

TAFs are components of the transcription factor IID (TFIID) complex, PCAF histone acetylase complex and TBP-free TAFII complex (TFTC). TAFs components-TIIFD are essential for mediating regulation of RNA polymerase transcription. TAF5/TAFII100 interacts strongly with the histone H4-related TAF6/TAFII80 and the histone H3-related TAF9/TAFII31, as well as a stable complex comprised of both TAF5/TAFII80 and TAF6/TAFII31. Apparently weaker interactions of TAF5/TAFII100 with TBP, TAF1/TAFII250, TAF11/TAFII28, and TAF12/TAFII20, but not TAF7/TAFII55, also have been observed.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	406
255570130	390	Prolactin regulatory element-binding pro	0.953	0.992	0.608	1e-134
224101847	356	predicted protein [Populus trichocarpa]	0.866	0.988	0.642	1e-130
359472868	394	PREDICTED: SEC12-like protein 2-like [Vi	0.965	0.994	0.590	1e-125
224108319	370	predicted protein [Populus trichocarpa]	0.911	1.0	0.621	1e-124
356521544	400	PREDICTED: SEC12-like protein 2-like [Gl	0.967	0.982	0.567	1e-123
449445340	393	PREDICTED: SEC12-like protein 2-like [Cu	0.945	0.977	0.589	1e-116
297737697	302	unnamed protein product [Vitis vinifera]	0.741	0.996	0.639	1e-108
147801552	369	hypothetical protein VITISV_036876 [Viti	0.903	0.994	0.528	1e-100
15226281	393	prolactin regulatory element-binding pro	0.948	0.979	0.506	6e-94
166878	393	St12p protein [Arabidopsis thaliana]	0.948	0.979	0.506	1e-93

>gi|255570130|ref|XP_002526027.1| Prolactin regulatory element-binding protein, putative [Ricinus communis] gi|223534674|gb|EEF36367.1| Prolactin regulatory element-binding protein, putative [Ricinus communis]

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 247/406 (60%), Positives = 312/406 (76%), Gaps = 19/406 (4%)

Query: 1   MGSRSRNEESHNLQKYGVPLYGAGWVPYDQVIRSTHKPPKQQDDDDKEEDQHGSKDEAVA 60
           MG +S   +S + QKYGVP Y A WVPY +++RS     K Q      E+ H    E +A
Sbjct: 1   MG-KSNKPDSLSFQKYGVPFYSAAWVPY-KLVRS-----KLQSSHSDHENDH----EEIA 49

Query: 61  DKSDDIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMA 120
           D+       YYV+LAGGGG G SGI NA++LS FDF  NSLS QPVA+L T SDLPYRM 
Sbjct: 50  DQ-------YYVLLAGGGGEGRSGIPNALVLSRFDFTFNSLSPQPVAKLGTGSDLPYRMV 102

Query: 121 IHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGT 180
           +HP GDG++CAL NSCR FEWDEV++ E  +LG+K SEK L+QLE+VGQQLAL F+SE +
Sbjct: 103 VHPGGDGLVCALPNSCRFFEWDEVKDNEAHKLGLKESEKALTQLEDVGQQLALAFNSESS 162

Query: 181 IFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLAS 240
             A G E+G LRVFKWPS+EI LNE+EAH S+KDL FSPDGKFLVSLG RGPGRVWD+ S
Sbjct: 163 ALAVGGEDGRLRVFKWPSMEIFLNEAEAHPSLKDLCFSPDGKFLVSLGGRGPGRVWDVTS 222

Query: 241 SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR 300
           S     L+KENDE+FASCRFS   ++  VLYIAAITD+G SIVTW+ ++W RI +K + R
Sbjct: 223 STAVASLSKENDEVFASCRFSQTTDQTQVLYIAAITDKGGSIVTWDASSWNRIGSKHITR 282

Query: 301 EPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVS 360
           + +SSFNVS DGK LAVGT+ GD+ +++S+ ++V+  V+KAHLG+VTALAFS+DSRALVS
Sbjct: 283 DGISSFNVSPDGKFLAVGTSQGDVLLLNSTRVRVQKVVRKAHLGMVTALAFSHDSRALVS 342

Query: 361 ASMDSSVRVTVIEDKKKSGGLNLWIIIFILLLAMAAYFVKAKGIIP 406
           AS+DSS RVT+++D  KSGGL+LW+IIF++LLAM AYF+K +G++P
Sbjct: 343 ASLDSSARVTLVQD-VKSGGLSLWLIIFVILLAMVAYFMKNEGLLP 387

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101847|ref|XP_002312443.1| predicted protein [Populus trichocarpa] gi|222852263|gb|EEE89810.1| predicted protein [Populus trichocarpa]

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 234/364 (64%), Positives = 284/364 (78%), Gaps = 12/364 (3%)

Query: 13  LQKYGVPLYGAGWVPYDQVIRSTHKPPKQQDDD-DKEEDQHGSKDEAVADKSDDIRRNYY 71
           LQKYGVPLY A W+P  Q     H   KQ + D D EE  H S               YY
Sbjct: 4   LQKYGVPLYSAAWLPL-QFRHEDHDSSKQHEQDKDTEEITHASASS----------YEYY 52

Query: 72  VVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICA 131
           V+LAGGGG G SGI NAVLLS FDF+SNSLS QPV +L   SDLPYRM +HP GDG+ICA
Sbjct: 53  VILAGGGGEGRSGIPNAVLLSRFDFSSNSLSPQPVPKLNLGSDLPYRMVVHPGGDGLICA 112

Query: 132 LQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNL 191
           L NSCR FEWDEVE+ E  +LG+K SEKVL+QLE+VGQQLAL F+S+ ++ A G E+GNL
Sbjct: 113 LPNSCRFFEWDEVEDNEDHKLGLKSSEKVLTQLEDVGQQLALVFNSDSSVLAVGGEDGNL 172

Query: 192 RVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKEN 251
           RVFKWPS+EII NE++AHAS+KDL FSPDGKFLVSLG RGPGRVWD+ SS     L+KEN
Sbjct: 173 RVFKWPSMEIIFNEAQAHASLKDLCFSPDGKFLVSLGGRGPGRVWDVTSSMAVASLSKEN 232

Query: 252 DELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSAD 311
           DE+FASCRFS ++++  VLY+AAITD+G+SIVTWN ++WKR+ +K V REPVSSFN+S D
Sbjct: 233 DEIFASCRFSQISDQTQVLYVAAITDKGSSIVTWNASSWKRVSSKHVFREPVSSFNISPD 292

Query: 312 GKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTV 371
           GK LA+GTA GD+ +I+S+++ ++T ++KAHLGIVTAL FS+DSRALVSASMDSS RVT+
Sbjct: 293 GKFLAIGTAQGDVMLINSTNMCIQTMIRKAHLGIVTALTFSHDSRALVSASMDSSARVTL 352

Query: 372 IEDK 375
           +EDK
Sbjct: 353 VEDK 356

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472868|ref|XP_002284414.2| PREDICTED: SEC12-like protein 2-like [Vitis vinifera]

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/403 (59%), Positives = 309/403 (76%), Gaps = 11/403 (2%)

Query: 4   RSRNEESHNLQKYGVPLYGAGWVPYDQVIRSTHKPPKQQDDDDKEEDQHGSKDEAVADKS 63
           +++N +  N +KYGVPLYGA W P   +I    +P  Q+ + D E    GS     A   
Sbjct: 3   KAKNPDPPNYKKYGVPLYGAAWAP-STIINDAPQPLDQKQEAD-EVSGEGSTPSPAAPT- 59

Query: 64  DDIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHP 123
                  Y+V  GGGG G SGI NA+LL+ FDFASNSLSD PV +L   +DLPYRMA+HP
Sbjct: 60  -------YLVFCGGGGEGRSGIPNALLLAEFDFASNSLSDMPVFKLGIGADLPYRMAVHP 112

Query: 124 HGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFA 183
            G+G+IC+L  SC+ F+WDE++  E+ + G+K+SEKVL+ LE+VGQQLALTF+++G++ A
Sbjct: 113 GGEGLICSLPKSCKWFQWDEIKTEEVHKQGLKLSEKVLTHLEDVGQQLALTFNNDGSMLA 172

Query: 184 AGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAV 243
            G E+GNLRVFKWPS+E +L+E++AHA+VKD  FSPDGKFLVSLG+ GPGRVWDL SS  
Sbjct: 173 VGGEDGNLRVFKWPSMENVLSEAQAHATVKDFDFSPDGKFLVSLGSGGPGRVWDLTSSTA 232

Query: 244 ATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPV 303
              L KENDE+FA CRFS  N ++ VLYIAA+ DRGA IVTWNTTTWK++ +KQ+VR+ +
Sbjct: 233 IASLPKENDEVFAFCRFSQTNVKNQVLYIAAVRDRGACIVTWNTTTWKKVGSKQIVRDSI 292

Query: 304 SSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASM 363
           S+F+VSADGKLL+VGT  GDI I++S+S+QV+  V+KAHLGIVT + FS DSRALVSASM
Sbjct: 293 SAFSVSADGKLLSVGTIQGDIVIVNSASMQVQAVVRKAHLGIVTTMRFSQDSRALVSASM 352

Query: 364 DSSVRVTVIEDKKKSGGLNLWIIIFILLLAMAAYFVKAKGIIP 406
           DSS RVTVI++ KK+ G +LWIIIFI+++A+AAY +K KGI+P
Sbjct: 353 DSSARVTVIKEMKKN-GFSLWIIIFIIIVAIAAYLMKTKGIVP 394

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108319|ref|XP_002314804.1| predicted protein [Populus trichocarpa] gi|222863844|gb|EEF00975.1| predicted protein [Populus trichocarpa]

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 232/373 (62%), Positives = 294/373 (78%), Gaps = 3/373 (0%)

Query: 1   MGSRSRNEESHNLQKYGVPLYGAGWVPYDQVIRSTHKPPKQQDDDDKEEDQHGSKDEAVA 60
           MG +SR  +  +LQKYGVPLY A W+PY + +RS  +P     D  K+++Q   ++E + 
Sbjct: 1   MG-KSREADPQSLQKYGVPLYSAAWLPYKE-LRSKLQPRDDHVDSSKQQEQQQEEEEEIP 58

Query: 61  DKSDDIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMA 120
             S      +YVVLAGGGG G+SGI NAVLLS FDF+SNSL+ QPVA+L   S LPYRM 
Sbjct: 59  KPSAS-SHEHYVVLAGGGGEGSSGIPNAVLLSCFDFSSNSLASQPVAKLGLGSQLPYRMV 117

Query: 121 IHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGT 180
           +HP GDG+ICA  +SCR F+WDEV++ E  +LG+K S+KVL+QLE+VGQQLAL F+S+ +
Sbjct: 118 VHPGGDGVICAFPSSCRFFDWDEVKDNEDHKLGLKPSKKVLTQLEDVGQQLALAFNSDSS 177

Query: 181 IFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLAS 240
           + A G E+GNLRVFKWP +EIILNE++AHAS+KDL FSPDGKFLVS+G R  GRVWD+ S
Sbjct: 178 VLAVGGEDGNLRVFKWPGMEIILNETQAHASLKDLCFSPDGKFLVSMGQRDLGRVWDVTS 237

Query: 241 SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR 300
           S     L KENDE+FASCRFS  +++  VLYIAAITD+G+SIVTWNT++WKR+ +K V R
Sbjct: 238 STAVASLPKENDEIFASCRFSQRSDQAQVLYIAAITDKGSSIVTWNTSSWKRMSSKHVAR 297

Query: 301 EPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVS 360
           EPVSSFNVS DGKLLA+G   GD+ +++S++L+V+T V+KAHLGIVTALAFS+DSRALVS
Sbjct: 298 EPVSSFNVSPDGKLLAMGMTQGDVLLVNSTNLRVQTLVRKAHLGIVTALAFSHDSRALVS 357

Query: 361 ASMDSSVRVTVIE 373
           ASMDSS RVT+IE
Sbjct: 358 ASMDSSARVTLIE 370

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521544|ref|XP_003529414.1| PREDICTED: SEC12-like protein 2-like [Glycine max]

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/402 (56%), Positives = 310/402 (77%), Gaps = 9/402 (2%)

Query: 1   MGSRSRNEESHNLQKYGVPLYGAGWVPYDQVIRSTHKPPKQQDDDDKEEDQHGSKDEAVA 60
           MG R +  +  N +KYGVP Y   W+P   V++S     + +  D+  +  H +     A
Sbjct: 1   MGKR-QIPDPPNFKKYGVPFYSVAWIP-QHVVKSR----QIETADESSDSDHSTSPATEA 54

Query: 61  DKSDDIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMA 120
           +K        Y++ AGGGGAG+SGI NA++++HFD ASNSLSDQPV +L TDS+LPYRMA
Sbjct: 55  EKEPATVAGNYLLFAGGGGAGHSGIPNALVIAHFDVASNSLSDQPVCKLGTDSELPYRMA 114

Query: 121 IHPHGDGIICALQNS--CRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSE 178
           ++ +GDG+ICA++    CR F+WD+ +++EI +L +K+SEKVLSQLE+VGQQLAL F+++
Sbjct: 115 LNSNGDGLICAMETPMVCRWFDWDQNKSSEIHKLSLKLSEKVLSQLEDVGQQLALAFNND 174

Query: 179 GTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDL 238
           GT  AAG E+GNLRVFKWPS+EIILNE+ AH+S+KDL FS DGK L SLG+ GP +VWD+
Sbjct: 175 GTALAAGGEDGNLRVFKWPSMEIILNETNAHSSLKDLHFSSDGKLLASLGSGGPCKVWDV 234

Query: 239 ASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQV 298
           +SS V + L+ EN E F+SCRFS  N+E  +LYIAA+TD+G SI+TWNT TW+R+ +K +
Sbjct: 235 SSSMVLSSLSNENRETFSSCRFSQTNDETLILYIAAMTDKGGSILTWNTQTWERMASKHI 294

Query: 299 VREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRAL 358
           +R+P+S+FNVSADGK LA GT SGDI +++S+++Q+ T +KKAHLGIVTALAFS DSRA+
Sbjct: 295 IRDPISAFNVSADGKFLACGTPSGDIVVVNSTNMQIHTMIKKAHLGIVTALAFSPDSRAV 354

Query: 359 VSASMDSSVRVTVIEDKKKSGGLNLWIIIFILLLAMAAYFVK 400
            S SMDSS RVT+IE+ KK+ GL+LWI +FI+LLA+AAYF++
Sbjct: 355 ASVSMDSSARVTIIEE-KKTNGLSLWIALFIILLAVAAYFLR 395

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445340|ref|XP_004140431.1| PREDICTED: SEC12-like protein 2-like [Cucumis sativus]

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 230/390 (58%), Positives = 293/390 (75%), Gaps = 6/390 (1%)

Query: 9   ESHNLQKYGVPLYGAGWVPYDQVIRSTHKPPKQQDDDDKEEDQHGSKDEAVADKSDDIRR 68
           E  N +KYGVP Y A W+P    ++S H+P + QD   +  D   S  +  +  S     
Sbjct: 5   EPSNSRKYGVPFYAAAWLP-SASLQSKHQPSQSQDPPHQSPDPDISSADNKSLPSHPA-- 61

Query: 69  NYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGI 128
           +YYV  AGGGG G SGI NA++L+HFDF S SLSD PVA+  T SDLPYRMAIHP GDGI
Sbjct: 62  SYYVAAAGGGGEGRSGISNALILAHFDFESRSLSDHPVAKYGTGSDLPYRMAIHPAGDGI 121

Query: 129 ICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSEN 188
           IC+L  SC LF+ D  ++     LG+K+S++VLS LE+VGQQL+L F++EG++ A G E+
Sbjct: 122 ICSLPKSCSLFKVDTEKDAGDETLGLKLSQEVLSPLEDVGQQLSLAFNNEGSLLATGGED 181

Query: 189 GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLA 248
           GNLRV KWPSL+I+LNE  +H+SVKDL FSPDGK+LVSLG  GP RVWD+ SS + T L 
Sbjct: 182 GNLRVLKWPSLDIVLNEPSSHSSVKDLDFSPDGKYLVSLG--GPCRVWDITSSTLVTSLP 239

Query: 249 KENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNV 308
           KENDE+F SC+FS  NN D VLY AA+T +G SIV+WN TTW+R+ +K + R+ +++FNV
Sbjct: 240 KENDEVFISCKFSLTNNGDMVLYTAAVTGKGGSIVSWNATTWRRVASKLITRDNITAFNV 299

Query: 309 SADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVR 368
           S+ G+LLA GT  GD+ I++S+SLQVR  VKKAHLG VTAL+FS DSRALVSASMDSS R
Sbjct: 300 SSSGRLLACGTTQGDVLIMNSTSLQVRKIVKKAHLGFVTALSFSPDSRALVSASMDSSAR 359

Query: 369 VTVIEDKKKSGGLNLWIIIFILLLAMAAYF 398
           VTVIE+++K  G+N+WIIIFILL+A+AAYF
Sbjct: 360 VTVIEEEQKK-GMNMWIIIFILLIAIAAYF 388

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737697|emb|CBI26898.3| unnamed protein product [Vitis vinifera]

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/302 (63%), Positives = 252/302 (83%), Gaps = 1/302 (0%)

Query: 105 PVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQL 164
           PV +L   +DLPYRMA+HP G+G+IC+L  SC+ F+WDE++  E+ + G+K+SEKVL+ L
Sbjct: 2   PVFKLGIGADLPYRMAVHPGGEGLICSLPKSCKWFQWDEIKTEEVHKQGLKLSEKVLTHL 61

Query: 165 ENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFL 224
           E+VGQQLALTF+++G++ A G E+GNLRVFKWPS+E +L+E++AHA+VKD  FSPDGKFL
Sbjct: 62  EDVGQQLALTFNNDGSMLAVGGEDGNLRVFKWPSMENVLSEAQAHATVKDFDFSPDGKFL 121

Query: 225 VSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVT 284
           VSLG+ GPGRVWDL SS     L KENDE+FA CRFS  N ++ VLYIAA+ DRGA IVT
Sbjct: 122 VSLGSGGPGRVWDLTSSTAIASLPKENDEVFAFCRFSQTNVKNQVLYIAAVRDRGACIVT 181

Query: 285 WNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLG 344
           WNTTTWK++ +KQ+VR+ +S+F+VSADGKLL+VGT  GDI I++S+S+QV+  V+KAHLG
Sbjct: 182 WNTTTWKKVGSKQIVRDSISAFSVSADGKLLSVGTIQGDIVIVNSASMQVQAVVRKAHLG 241

Query: 345 IVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLNLWIIIFILLLAMAAYFVKAKGI 404
           IVT + FS DSRALVSASMDSS RVTVI++ KK+ G +LWIIIFI+++A+AAY +K KGI
Sbjct: 242 IVTTMRFSQDSRALVSASMDSSARVTVIKEMKKN-GFSLWIIIFIIIVAIAAYLMKTKGI 300

Query: 405 IP 406
           +P
Sbjct: 301 VP 302

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147801552|emb|CAN77008.1| hypothetical protein VITISV_036876 [Vitis vinifera]

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 213/403 (52%), Positives = 276/403 (68%), Gaps = 36/403 (8%)

Query: 4   RSRNEESHNLQKYGVPLYGAGWVPYDQVIRSTHKPPKQQDDDDKEEDQHGSKDEAVADKS 63
           +++N +  N +KYGVPLYGA W P   +I    +P  Q+ + D E    GS     A   
Sbjct: 3   KAKNPDPPNYKKYGVPLYGAAWAP-STIINDAPQPLDQKQEAD-EVSGEGSTPSPAAPT- 59

Query: 64  DDIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHP 123
                  Y+V  GGGG G SGI NA+LL+ FDFASNSLSD PV +L   +DLPYRMA+HP
Sbjct: 60  -------YLVFCGGGGEGRSGIPNALLLAEFDFASNSLSDMPVFKLGIGADLPYRMAVHP 112

Query: 124 HGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFA 183
            G+G+IC+L  SC+ F+WDE++  E+ + G+K+SEKVL+ LE+VGQQLALTF+++G++ A
Sbjct: 113 GGEGLICSLPKSCKWFQWDEIKTEEVHKQGLKLSEKVLTHLEDVGQQLALTFNNDGSMLA 172

Query: 184 AGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAV 243
            G E+GNLRVFKWPS+E +L+E++AHA+VKD  FSPDGKFLVSLG+ GPGRVWDL SS  
Sbjct: 173 VGGEDGNLRVFKWPSMENVLSEAQAHATVKDFDFSPDGKFLVSLGSGGPGRVWDLTSSTA 232

Query: 244 ATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPV 303
              L KENDE+FA CRFS  N ++ VLYIAA+  RG   V  +     R           
Sbjct: 233 IASLPKENDEVFAFCRFSQTNVKNQVLYIAAV--RGEYSVLDDVLFIFRRN--------- 281

Query: 304 SSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASM 363
                         GT  GDI I++S+S+QV+  V+KAHLGIVT + FS DSRALVSASM
Sbjct: 282 --------------GTIQGDIVIVNSASMQVQAVVRKAHLGIVTTMRFSQDSRALVSASM 327

Query: 364 DSSVRVTVIEDKKKSGGLNLWIIIFILLLAMAAYFVKAKGIIP 406
           DSS RVTVI++ KK+ G +LWIIIFI+++A+AAY +K KGI+P
Sbjct: 328 DSSARVTVIKEMKKN-GFSLWIIIFIIIVAIAAYLMKTKGIVP 369

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15226281|ref|NP_178256.1| prolactin regulatory element-binding protein [Arabidopsis thaliana] gi|85681050|sp|Q39221.4|STLP2_ARATH RecName: Full=SEC12-like protein 2 gi|3785976|gb|AAC67323.1| putative protein transport protein SEC12p [Arabidopsis thaliana] gi|18377757|gb|AAL67028.1| putative protein transport protein SEC12p [Arabidopsis thaliana] gi|21689839|gb|AAM67563.1| putative protein transport protein SEC12p [Arabidopsis thaliana] gi|330250364|gb|AEC05458.1| prolactin regulatory element-binding protein [Arabidopsis thaliana]

 Score =  350 bits (899), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 205/405 (50%), Positives = 275/405 (67%), Gaps = 20/405 (4%)

Query: 5   SRNEESHNLQKYGVPLYGAGWVPYDQVIRSTHKPPKQQDDDDKEEDQHGSKDEAVADKSD 64
           +   +  N+Q YGVP+Y A W+P   V RS     K   D +K ED   S   + + +S 
Sbjct: 6   TETNQPSNMQTYGVPIYAADWIPEVDV-RS-----KIIMDPEKSEDDDESSSSSSSSRS- 58

Query: 65  DIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPH 124
                  +VL+GGGG G SGI N +L+   D  +NSLS+QP+  L   SDLPYRMA+HP 
Sbjct: 59  ------CIVLSGGGGEGRSGISNVILICRVDLNTNSLSEQPLGRLVVGSDLPYRMAVHPR 112

Query: 125 GDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAA 184
             G+ICAL NSC+LF W+++ + E  + G   SE+V+ +L +VGQQLAL F+ EG++ AA
Sbjct: 113 EGGLICALPNSCKLFHWEDIMSREDNQAGE--SEEVIKELRDVGQQLALAFNPEGSVLAA 170

Query: 185 GSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGP-GRVWDLASSAV 243
           G+E+G LRVFKWPS+  +LNES+AH+SVK L+FS  G+FLVSLG  GP  RVWD+ +SA 
Sbjct: 171 GAEDGTLRVFKWPSMNTLLNESQAHSSVKCLTFSESGQFLVSLG--GPVCRVWDVNASAA 228

Query: 244 ATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPV 303
              L+KE DE+FASCRFS  +  + VLYIAA T+RG SI+T +T  WKR  +K + +  +
Sbjct: 229 VASLSKEKDEMFASCRFSVDSAGNEVLYIAANTERGGSIITCDTKLWKRKWSKPIKKNSI 288

Query: 304 SSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASM 363
           S+FNVSADGKLLA+GT  GD+ I++S+ +Q    VKKAHLG+VTAL FS DSR LVS S 
Sbjct: 289 SAFNVSADGKLLAIGTLEGDVLILESTRMQTIQVVKKAHLGLVTALTFSPDSRGLVSVSF 348

Query: 364 DSSVRVTVIEDKKKSGGLNLW--IIIFILLLAMAAYFVKAKGIIP 406
           DS  R+T+IE K    G+  W  +++ +LL  +A Y++KAKGIIP
Sbjct: 349 DSRARLTMIEQKGDKPGVRWWLLVLLIVLLYVVAYYYMKAKGIIP 393

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|166878|gb|AAA32871.1| St12p protein [Arabidopsis thaliana]

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 205/405 (50%), Positives = 275/405 (67%), Gaps = 20/405 (4%)

Query: 5   SRNEESHNLQKYGVPLYGAGWVPYDQVIRSTHKPPKQQDDDDKEEDQHGSKDEAVADKSD 64
           +   +  N+Q YGVP+Y A W+P   V RS     K   D +K ED   S   + + +S 
Sbjct: 6   TETNQPSNMQTYGVPIYAADWIPEVDV-RS-----KIIMDPEKSEDDDESSSSSSSSRS- 58

Query: 65  DIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPH 124
                  +VL+GGGG G SGI N +L+   D  +NSLS+QP+  L   SDLPYRMA+HP 
Sbjct: 59  ------CIVLSGGGGEGRSGISNVILICRVDLNTNSLSEQPLGRLVVGSDLPYRMAVHPR 112

Query: 125 GDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAA 184
             G+ICAL NSC+LF W+++ + E  + G   SE+V+ +L +VGQQLAL F+ EG++ AA
Sbjct: 113 EGGLICALPNSCKLFHWEDIMSREDNQAGE--SEEVIKELRDVGQQLALAFNPEGSVLAA 170

Query: 185 GSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGP-GRVWDLASSAV 243
           G+E+G LRVFKWPS+  +LNES+AH+SVK L+FS  G+FLVSLG  GP  RVWD+ +SA 
Sbjct: 171 GAEDGTLRVFKWPSMNTLLNESQAHSSVKCLTFSESGQFLVSLG--GPVCRVWDVNASAA 228

Query: 244 ATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPV 303
              L+KE DE+FASCRFS  +  + VLYIAA T+RG SI+T +T  WKR  +K + +  +
Sbjct: 229 VASLSKEKDEMFASCRFSVDSAGNEVLYIAANTERGGSIITCDTKLWKRKWSKPIKKNSI 288

Query: 304 SSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASM 363
           S+FNVSADGKLLA+GT  GD+ I++S+ +Q    VKKAHLG+VTAL FS DSR LVS S 
Sbjct: 289 SAFNVSADGKLLAIGTLEGDVLILESTRMQTIQIVKKAHLGLVTALTFSPDSRGLVSVSF 348

Query: 364 DSSVRVTVIEDKKKSGGLNLW--IIIFILLLAMAAYFVKAKGIIP 406
           DS  R+T+IE K    G+  W  +++ +LL  +A Y++KAKGIIP
Sbjct: 349 DSRARLTMIEQKGDKPGVRWWLLVLLIVLLYVVAYYYMKAKGIIP 393

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	406
TAIR|locus:2049582	393	STL2P "AT2G01470" [Arabidopsis	0.958	0.989	0.465	2e-86
TAIR|locus:2159697	383	AT5G50550 "AT5G50550" [Arabido	0.775	0.822	0.515	1.5e-85
TAIR|locus:2832497	383	AT5G50650 "AT5G50650" [Arabido	0.775	0.822	0.515	1.5e-85
TAIR|locus:2083850	398	PHF1 "AT3G52190" [Arabidopsis	0.738	0.753	0.293	9.5e-34
MGI|MGI:1355326	417	Preb "prolactin regulatory ele	0.487	0.474	0.283	3.5e-12
UNIPROTKB|F1SED4	415	PREB "Uncharacterized protein"	0.438	0.428	0.301	4.5e-12
UNIPROTKB|Q9HCU5	417	PREB "Prolactin regulatory ele	0.492	0.479	0.294	5.9e-12
FB|FBgn0031779	445	CG9175 [Drosophila melanogaste	0.502	0.458	0.265	1.5e-11
RGD|61929	417	Preb "prolactin regulatory ele	0.487	0.474	0.274	3.8e-11
UNIPROTKB|E2RBH1	418	PREB "Uncharacterized protein"	0.438	0.425	0.296	3.8e-11

TAIR|locus:2049582 STL2P "AT2G01470" [Arabidopsis thaliana (taxid:3702)]

 Score = 864 (309.2 bits), Expect = 2.0e-86, P = 2.0e-86
 Identities = 191/410 (46%), Positives = 254/410 (61%)

Query:     1 MGSRS-RNEESHNLQKYGVPLYGAGWVPYDQVIRSTHXXXXXXXXXXXXXXXHGSKDEAV 59
             M ++S    +  N+Q YGVP+Y A W+P +  +RS                   S+D+  
Sbjct:     1 MANQSTETNQPSNMQTYGVPIYAADWIP-EVDVRSK-----------IIMDPEKSEDDDE 48

Query:    60 ADKSDDIRRNYYVVLXXXXXXXNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRM 119
             +  S    R+  +VL        SGI N +L+   D  +NSLS+QP+  L   SDLPYRM
Sbjct:    49 SSSSSSSSRSC-IVLSGGGGEGRSGISNVILICRVDLNTNSLSEQPLGRLVVGSDLPYRM 107

Query:   120 AIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEG 179
             A+HP   G+ICAL NSC+LF W+++ + E  + G   SE+V+ +L +VGQQLAL F+ EG
Sbjct:   108 AVHPREGGLICALPNSCKLFHWEDIMSREDNQAGE--SEEVIKELRDVGQQLALAFNPEG 165

Query:   180 TIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPG-RVWDL 238
             ++ AAG+E+G LRVFKWPS+  +LNES+AH+SVK L+FS  G+FLVSLG  GP  RVWD+
Sbjct:   166 SVLAAGAEDGTLRVFKWPSMNTLLNESQAHSSVKCLTFSESGQFLVSLG--GPVCRVWDV 223

Query:   239 ASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQV 298
              +SA    L+KE DE+FASCRFS  +  + VLYIAA T+RG SI+T +T  WKR  +K +
Sbjct:   224 NASAAVASLSKEKDEMFASCRFSVDSAGNEVLYIAANTERGGSIITCDTKLWKRKWSKPI 283

Query:   299 VREPVSSFNVSADGKLLAVGTAXXXXXXXXXXXLQVRTAVKKAHLGIVTALAFSYDSRAL 358
              +  +S+FNVSADGKLLA+GT            +Q    VKKAHLG+VTAL FS DSR L
Sbjct:   284 KKNSISAFNVSADGKLLAIGTLEGDVLILESTRMQTIQVVKKAHLGLVTALTFSPDSRGL 343

Query:   359 VSASMDSSVRVTVIEDKKKSGGXX--XXXXXXXXXXAMAAYFVKAKGIIP 406
             VS S DS  R+T+IE K    G               +A Y++KAKGIIP
Sbjct:   344 VSVSFDSRARLTMIEQKGDKPGVRWWLLVLLIVLLYVVAYYYMKAKGIIP 393

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA;TAS

GO:0043090 "amino acid import" evidence=RCA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IDA

TAIR|locus:2159697 AT5G50550 "AT5G50550" [Arabidopsis thaliana (taxid:3702)]

 Score = 806 (288.8 bits), Expect = 1.5e-85, Sum P(2) = 1.5e-85
 Identities = 167/324 (51%), Positives = 218/324 (67%)

Query:    54 SKDEAVADKSDDIRRNYYVVLXXXXXXXNSGIRNAVLLSHFDFASNSLSDQPVAELRTDS 113
             +KD+   D  D    + Y+VL        SGI N +L+   D  +NSLS+QP+      +
Sbjct:    34 TKDQD-DDDDDGSSSSSYIVLSGGGGEGRSGIPNVILICRVDLHTNSLSEQPIGRRVIGT 92

Query:   114 DLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLAL 173
             DLPYRMAIHP   G+ICAL NSCRLF+W+ +   +      + SEKV+ +L++VGQQL+L
Sbjct:    93 DLPYRMAIHPRQGGLICALPNSCRLFDWENIIEDD----NEEESEKVVKELKDVGQQLSL 148

Query:   174 TFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGP- 232
             +F+ +GT+ A G+E+G LRVF+WPS++ +LNES+ HASVK L+FS  GKFLVSLG   P 
Sbjct:   149 SFNQDGTVLATGAEDGTLRVFEWPSMKTLLNESKTHASVKSLTFSESGKFLVSLG--APL 206

Query:   233 GRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKR 292
              RVWD+ +SA    L+KE DE+FASCRFS  N+   VLY+AA T RG SI+TW+TT+W+R
Sbjct:   207 CRVWDVNASAAIASLSKEKDEMFASCRFSVDNSGSEVLYVAANTQRGGSIITWDTTSWRR 266

Query:   293 IRTKQVVRE-PVSSFNVSADGKLLAVGTAXXXXXXXXXXXLQVRTAVKKAHLGIVTALAF 351
               +K + R   +S+FNVSADGKLLAVGT            +Q    VKKAHLG+VTAL F
Sbjct:   267 RSSKLIKRNNSISAFNVSADGKLLAVGTLEGDVLIIDSTKMQTNQIVKKAHLGLVTALTF 326

Query:   352 SYDSRALVSASMDSSVRVTVIEDK 375
             S DSR LVS S DS  R+TVI+ K
Sbjct:   327 SPDSRCLVSVSFDSRARLTVIKQK 350

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2832497 AT5G50650 "AT5G50650" [Arabidopsis thaliana (taxid:3702)]

 Score = 806 (288.8 bits), Expect = 1.5e-85, Sum P(2) = 1.5e-85
 Identities = 167/324 (51%), Positives = 218/324 (67%)

Query:    54 SKDEAVADKSDDIRRNYYVVLXXXXXXXNSGIRNAVLLSHFDFASNSLSDQPVAELRTDS 113
             +KD+   D  D    + Y+VL        SGI N +L+   D  +NSLS+QP+      +
Sbjct:    34 TKDQD-DDDDDGSSSSSYIVLSGGGGEGRSGIPNVILICRVDLHTNSLSEQPIGRRVIGT 92

Query:   114 DLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLAL 173
             DLPYRMAIHP   G+ICAL NSCRLF+W+ +   +      + SEKV+ +L++VGQQL+L
Sbjct:    93 DLPYRMAIHPRQGGLICALPNSCRLFDWENIIEDD----NEEESEKVVKELKDVGQQLSL 148

Query:   174 TFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGP- 232
             +F+ +GT+ A G+E+G LRVF+WPS++ +LNES+ HASVK L+FS  GKFLVSLG   P 
Sbjct:   149 SFNQDGTVLATGAEDGTLRVFEWPSMKTLLNESKTHASVKSLTFSESGKFLVSLG--APL 206

Query:   233 GRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKR 292
              RVWD+ +SA    L+KE DE+FASCRFS  N+   VLY+AA T RG SI+TW+TT+W+R
Sbjct:   207 CRVWDVNASAAIASLSKEKDEMFASCRFSVDNSGSEVLYVAANTQRGGSIITWDTTSWRR 266

Query:   293 IRTKQVVRE-PVSSFNVSADGKLLAVGTAXXXXXXXXXXXLQVRTAVKKAHLGIVTALAF 351
               +K + R   +S+FNVSADGKLLAVGT            +Q    VKKAHLG+VTAL F
Sbjct:   267 RSSKLIKRNNSISAFNVSADGKLLAVGTLEGDVLIIDSTKMQTNQIVKKAHLGLVTALTF 326

Query:   352 SYDSRALVSASMDSSVRVTVIEDK 375
             S DSR LVS S DS  R+TVI+ K
Sbjct:   327 SPDSRCLVSVSFDSRARLTVIKQK 350

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2083850 PHF1 "AT3G52190" [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 92/313 (29%), Positives = 154/313 (49%)

Query:    71 YVVLXXXXXXXNSGIRNAVLLSHFDF--ASNSLSDQPVA-ELRTDSDL-PYRMAIHPHGD 126
             +V++        S + +  LL+ F F   + SLS  P+A     DSD  P  +++HP GD
Sbjct:    27 WVLIAKASKRRGSSVSSPALLNIFSFDPITASLSSSPLATHTLKDSDGDPVAVSVHPGGD 86

Query:   127 GIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAG 185
               +C+  +  C+LFE   V        G+ I  K L  L+N G Q  + F  +G+  A G
Sbjct:    87 YFVCSTSKGGCKLFEL--VGGAT----GITILAKELLPLQNAGLQKCMAFSFDGSKLAVG 140

Query:   186 SENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT 245
               +G LR+ +WP+L +IL+E +AH S++D+ FS D +FL +    G  R+W        +
Sbjct:   141 GVDGCLRIMEWPNLSVILDEPKAHKSIRDMDFSLDSEFLATTSTDGSARIWKAEDGFPLS 200

Query:   246 PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSS 305
              L +  DE    CRFS    + + L+ AA       +  ++ +TWK++  K++ R+  S+
Sbjct:   201 TLERSGDENIELCRFSKDGTKPF-LFCAAQRGDTPMVNVYDISTWKKLGFKKLSRKTAST 259

Query:   306 FNVSADGKLLAVGTAXXXXXXXXXXXLQVRTAVKKAHLG-IVTALAFSYDSRALVSASMD 364
               VS DGK +A+G             +++    K+ HLG  + +L F    R +++ S +
Sbjct:   260 MAVSLDGKYIALGGKDGDVSVAEVKTMEIYHYSKRLHLGQSIASLEFCPSERVMLTTSSE 319

Query:   365 SSVRVTVIEDKKK 377
                 VT +   K+
Sbjct:   320 WGEMVTKLTVPKE 332

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006817 "phosphate ion transport" evidence=IMP

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA;IMP

GO:0016036 "cellular response to phosphate starvation" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

MGI|MGI:1355326 Preb "prolactin regulatory element binding" [Mus musculus (taxid:10090)]

 Score = 189 (71.6 bits), Expect = 3.5e-12, P = 3.5e-12
 Identities = 61/215 (28%), Positives = 97/215 (45%)

Query:   152 LGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAH-A 210
             L VK  E V +   N   Q  + F+ + T+ A G  +G++RV+K PSLE +L E +AH  
Sbjct:   139 LKVKNLEAVQTDFSNEPLQKVVCFNHDNTLLATGGTDGHVRVWKVPSLEKVL-EFKAHEG 197

Query:   211 SVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT------PLAKENDELFASCRFSPLN 264
              + DL+  PDGK LV++G      VW               P +      + +CRF  + 
Sbjct:   198 EIGDLTLGPDGK-LVTVGWDFKASVWQKDQLVTQLQWQENGPASSNTPYRYQACRFGQVP 256

Query:   265 NE--DYVLYIAAITDRGAS------IVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLA 316
             ++     L+   I  +         +  W+++T+  +RT+    E +S  +VS  G  L 
Sbjct:   257 DQLGGLRLFTVQIPHKRLRQPPPCYLTAWDSSTFLPLRTRSCGHEVISCLSVSDSGTFLG 316

Query:   317 VGTAXXXXXXXXXXXLQVRTAVKKAHLGIVTALAF 351
             +GT            LQ    VK+AH  +VT + F
Sbjct:   317 LGTVTGSVAIYIAFSLQRLYYVKEAHGIVVTDVTF 351

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=ISO

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISO;ISS

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

UNIPROTKB|F1SED4 PREB "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 188 (71.2 bits), Expect = 4.5e-12, P = 4.5e-12
 Identities = 60/199 (30%), Positives = 95/199 (47%)

Query:   170 QLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAH-ASVKDLSFSPDGKFLVSLG 228
             Q  + F+ + T+ A G  +G +RV+K P+LE +L E  AH   ++DL+  PDGK LV++G
Sbjct:   158 QKVVRFNHDATLLATGGTDGYVRVWKVPTLEKVL-EFRAHEGEIEDLAVGPDGK-LVTVG 215

Query:   229 NRGPGRVWDLASSAVATPLA-KENDELFAS-------CRFSPLNNED--YVLYIAAITDR 278
                   VW      + T L  +EN   F++       CRF P+ ++     L+   I  +
Sbjct:   216 RDLKASVWQ--KDQLVTQLHWQENGPTFSNTPYRYQACRFGPVPDQPAGLRLFTVQIPHK 273

Query:   279 GAS------IVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXXL 332
                      +  W+ +T+  +RT+    E +S  +VS  G  L +GT            L
Sbjct:   274 RLRQPPPCYLTAWDGSTFLPLRTRSCGHEVISCLSVSESGTFLGLGTVTGSVAIYIAFSL 333

Query:   333 QVRTAVKKAHLGIVTALAF 351
             Q    VK+AH  +VT +AF
Sbjct:   334 QRLYYVKEAHGIVVTDVAF 352

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|Q9HCU5 PREB "Prolactin regulatory element-binding protein" [Homo sapiens (taxid:9606)]

 Score = 187 (70.9 bits), Expect = 5.9e-12, P = 5.9e-12
 Identities = 66/224 (29%), Positives = 104/224 (46%)

Query:   145 ENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILN 204
             E  E+R   V+  + V +   +   Q  + F+ + T+ A G  +G +RV+K PSLE +L 
Sbjct:   135 EGLELR---VENLQAVQTDFSSDPLQKVVCFNHDNTLLATGGTDGYVRVWKVPSLEKVL- 190

Query:   205 ESEAH-ASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLA-KENDELFAS----- 257
             E +AH   ++DL+  PDGK LV++G      VW      + T L  +EN   F+S     
Sbjct:   191 EFKAHEGEIEDLALGPDGK-LVTVGRDLKASVWQ--KDQLVTQLHWQENGPTFSSTPYRY 247

Query:   258 --CRFSPLNNED--YVLYIAAITDRGAS------IVTWNTTTWKRIRTKQVVREPVSSFN 307
               CRF  + ++     L+   I  +         +  W+ + +  +RTK    E VS  +
Sbjct:   248 QACRFGQVPDQPAGLRLFTVQIPHKRLRQPPPCYLTAWDGSNFLPLRTKSCGHEVVSCLD 307

Query:   308 VSADGKLLAVGTAXXXXXXXXXXXLQVRTAVKKAHLGIVTALAF 351
             VS  G  L +GT            LQ    V++AH  +VT +AF
Sbjct:   308 VSESGTFLGLGTVTGSVAIYIAFSLQCLYYVREAHGIVVTDVAF 351

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=TAS

GO:0006987 "activation of signaling protein activity involved in unfolded protein response" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=TAS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=TAS

GO:0043687 "post-translational protein modification" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0048208 "COPII vesicle coating" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

FB|FBgn0031779 CG9175 [Drosophila melanogaster (taxid:7227)]

 Score = 184 (69.8 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 59/222 (26%), Positives = 99/222 (44%)

Query:   170 QLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHAS-VKDLSFSPDGKFLVSLG 228
             Q  +     G + A G  +G LRV+ +P + +   E  AH+  + DL FSPD K + S+ 
Sbjct:   189 QRVVRISGNGRLMATGGTDGKLRVWTFPQMTLAA-ELAAHSKEIDDLDFSPDSKLIASIS 247

Query:   229 NRGPGRVWDLASSAVATPLAKENDE----LFASCRFSPLN--NEDYVLYIAA-----ITD 277
                 G VWDLAS  +   L  +  E    LF  CR+  +    ++Y L+  A     +  
Sbjct:   248 KDAQGLVWDLASGQLQHKLQWKTPEGAKYLFKRCRYGTVEAQKDNYRLFTIANPLGKVGK 307

Query:   278 RGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXX-XLQVRT 336
             +   +  W+  + + +R    + E +SS  V  DG+ +AVGT             LQ   
Sbjct:   308 QRGFLQHWDCASGQ-LRQAVAIDESLSSLAVRDDGRFVAVGTMFSGSVSMYIAFSLQRVL 366

Query:   337 AVKKAHLGIVTALAF---SYDSRALVSASMDSSVRVTVIEDK 375
              +  AH   VT L F   + +    +S+  +++V    +++K
Sbjct:   367 HIPHAHSMFVTGLQFLPITNEEGPPISSDTEAAVLSISVDNK 408

GO:0005634 "nucleus" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

GO:0009306 "protein secretion" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=IMP

RGD|61929 Preb "prolactin regulatory element binding" [Rattus norvegicus (taxid:10116)]

 Score = 180 (68.4 bits), Expect = 3.8e-11, P = 3.8e-11
 Identities = 59/215 (27%), Positives = 95/215 (44%)

Query:   152 LGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAH-A 210
             L VK  E V +       Q  + F+ + T+ A G  +G++RV+K PSLE +L E +AH  
Sbjct:   139 LKVKNLEAVQTDFSTEPLQKVVCFNHDNTLLATGGSDGHVRVWKVPSLEKVL-EFKAHEG 197

Query:   211 SVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT------PLAKENDELFASCRFSPLN 264
              + DL+  PDGK LV++G      VW               P +      + +CRF  + 
Sbjct:   198 EIGDLALGPDGK-LVTVGWDFKASVWQKDQLVTQLQWQENGPTSSNTPYRYQACRFGQVP 256

Query:   265 NED--YVLYIAAITDRGAS------IVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLA 316
             ++     L+   I  +         +  W+++T+  ++T+    E +S   VS  G  L 
Sbjct:   257 DQPGGLRLFTVQIPHKRLRQPPPCYLTAWDSSTFLPLQTRSCGHEVISCLTVSESGTFLG 316

Query:   317 VGTAXXXXXXXXXXXLQVRTAVKKAHLGIVTALAF 351
             +GT            LQ    VK+AH  +VT + F
Sbjct:   317 LGTVTGSVAIYIAFSLQRLYYVKEAHGIVVTDVTF 351

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IDA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISO

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

UNIPROTKB|E2RBH1 PREB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 180 (68.4 bits), Expect = 3.8e-11, P = 3.8e-11
 Identities = 59/199 (29%), Positives = 94/199 (47%)

Query:   170 QLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAH-ASVKDLSFSPDGKFLVSLG 228
             Q  + F+ + T+ A G  +G +R++K PSLE +L E  AH   ++DL+  PDGK LV++G
Sbjct:   158 QKVVCFNHDNTLLATGGTDGYVRIWKVPSLEKVL-EFRAHEGEIEDLALGPDGK-LVTVG 215

Query:   229 NRGPGRVWDLASSAVATPLA-KENDELFAS-------CRFSPLNNED--YVLYIAAITDR 278
                   VW      + T L  +EN   F++       CRF  + ++     L+   I  +
Sbjct:   216 WDLKASVWQ--KDQLVTQLHWQENGPTFSNTPYRYQACRFGHVPDQPTRLRLFTVQIPHK 273

Query:   279 GAS------IVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXXL 332
                      +  W+ +T+  +RTK    E +S  +VS  G  L +GT            L
Sbjct:   274 RLRQPPPCYLTAWDGSTFLPLRTKSCGHEVISCLSVSESGTFLGLGTVTGSVAIYIAFSL 333

Query:   333 QVRTAVKKAHLGIVTALAF 351
             Q    V++AH  +VT +AF
Sbjct:   334 QCLYYVREAHGIVVTDVAF 352

GO:0005783 "endoplasmic reticulum" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q39221	STLP2_ARATH	No assigned EC number	0.5061	0.9482	0.9796	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	406
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-20
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-19
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-16
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-15
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-10
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-04
smart00320	40	smart00320, WD40, WD40 repeats	8e-04
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 88.9 bits (221), Expect = 7e-20
 Identities = 55/200 (27%), Positives = 96/200 (48%), Gaps = 10/200 (5%)

Query: 171 LALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNR 230
            ++ F  +G I ++ S +  ++V+   + + +         V  ++FSPDG F+ S    
Sbjct: 97  SSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQD 156

Query: 231 GPGRVWDLAS-SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT 289
           G  ++WDL +   VAT L     E+  S  FSP   +     +++ +D    +  W+ +T
Sbjct: 157 GTIKLWDLRTGKCVAT-LTGHTGEVN-SVAFSPDGEK----LLSSSSDGTIKL--WDLST 208

Query: 290 WKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTAL 349
            K + T +     V+S   S DG LLA G+  G I + D  + +    +   H   VT+L
Sbjct: 209 GKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL-SGHTNSVTSL 267

Query: 350 AFSYDSRALVSASMDSSVRV 369
           A+S D + L S S D ++R+
Sbjct: 268 AWSPDGKRLASGSADGTIRI 287

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 87.8 bits (218), Expect = 2e-19
 Identities = 51/199 (25%), Positives = 93/199 (46%), Gaps = 8/199 (4%)

Query: 171 LALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNR 230
             + F  +G + A GS +G ++V+   + E++         V+D++ S DG +L S  + 
Sbjct: 13  TCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSD 72

Query: 231 GPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW 290
              R+WDL +      L      +  S  FSP  +   +   ++  D+  +I  W+  T 
Sbjct: 73  KTIRLWDLETGECVRTLTGHTSYVS-SVAFSP--DGRILS--SSSRDK--TIKVWDVETG 125

Query: 291 KRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALA 350
           K + T +   + V+S   S DG  +A  +  G I + D  + +   A    H G V ++A
Sbjct: 126 KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCV-ATLTGHTGEVNSVA 184

Query: 351 FSYDSRALVSASMDSSVRV 369
           FS D   L+S+S D ++++
Sbjct: 185 FSPDGEKLLSSSSDGTIKL 203

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 81.3 bits (199), Expect = 1e-16
 Identities = 72/280 (25%), Positives = 117/280 (41%), Gaps = 15/280 (5%)

Query: 100 SLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEK 159
           SL D     LR   D    +A  P G+ ++ +  +   +  WD     ++      I   
Sbjct: 52  SLPDLSSLLLRGHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKL------IKSL 104

Query: 160 VLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAH-ASVKDLSFS 218
                 +V +    + D    + A+ S +G ++++   +   ++   E H  SV  L+FS
Sbjct: 105 EGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFS 164

Query: 219 PDGKFLVSLGNR-GPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITD 277
           PDGK L S  +  G  ++WDL +    + LA   D +  S  FSP         + A   
Sbjct: 165 PDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVS-SLAFSPDGG-----LLIASGS 218

Query: 278 RGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTA 337
              +I  W+ +T K +R+           + S DG LLA G++ G I + D  S      
Sbjct: 219 SDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLR 278

Query: 338 VKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKK 377
               H   V ++AFS D + L S S D +VR+  +E  K 
Sbjct: 279 TLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL 318

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 75.5 bits (184), Expect = 7e-15
 Identities = 69/273 (25%), Positives = 129/273 (47%), Gaps = 20/273 (7%)

Query: 99  NSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISE 158
           +  + +P++ L   +D    +A  P G  +I +  +   +  WD           +   +
Sbjct: 184 DLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWD-----------LSTGK 232

Query: 159 KVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAH-ASVKDLSF 217
            + S L      +  +F  +G++ A+GS +G +R++   S   +L     H +SV  ++F
Sbjct: 233 LLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAF 292

Query: 218 SPDGKFLVSLGNRGPGRVWDLASSAVATPLAKEN-DELFASCRFSPLNNEDYVLYIAAIT 276
           SPDGK L S  + G  R+WDL +  + + L  +  +   +S  FSP   +  +L      
Sbjct: 293 SPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSP---DGSLLVSGGSD 349

Query: 277 DRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRT 336
           D   +I  W+  T K ++T +     V S + S DG++++ G+  G + + D S+  +  
Sbjct: 350 DG--TIRLWDLRTGKPLKTLEGH-SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLR 406

Query: 337 AVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
                H   VT+L FS D ++L S S D+++R+
Sbjct: 407 -NLDGHTSRVTSLDFSPDGKSLASGSSDNTIRL 438

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 60.1 bits (144), Expect = 8e-10
 Identities = 51/214 (23%), Positives = 94/214 (43%), Gaps = 12/214 (5%)

Query: 171 LALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAH--ASVKDLSF-SPDGKFLVSL 227
            ++ F  +G +  +GS +G ++++   + E ++   E    +SV  L+  SPDG  ++  
Sbjct: 69  TSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLA 128

Query: 228 GNRGPG--RVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTW 285
            +   G  ++WDL++        + + E   S  FSP         +A+ +    +I  W
Sbjct: 129 SSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGK-----LLASGSSLDGTIKLW 183

Query: 286 NTTTWKRIRTKQVVREPVSSFNVSADGKLLAVG-TASGDISIIDSSSLQVRTAVKKAHLG 344
           +  T K + T     +PVSS   S DG LL    ++ G I + D S+ ++  +    H  
Sbjct: 184 DLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD 243

Query: 345 IVTALAFSYDSRALVSASMDSSVRVTVIEDKKKS 378
                +FS D   L S S D ++R+  +      
Sbjct: 244 -SVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSL 276

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 8/160 (5%)

Query: 210 ASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYV 269
             V  ++FSPDGK L +    G  +VWDL +  +   L K +         S   +  Y+
Sbjct: 10  GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL-KGHTGPVRDVAASA--DGTYL 66

Query: 270 LYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDS 329
              +  +D+   +  W+  T + +RT       VSS   S DG++L+  +    I + D 
Sbjct: 67  A--SGSSDKTIRL--WDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV 122

Query: 330 SSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
            + +  T + + H   V ++AFS D   + S+S D ++++
Sbjct: 123 ETGKCLTTL-RGHTDWVNSVAFSPDGTFVASSSQDGTIKL 161

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 48.9 bits (115), Expect = 3e-06
 Identities = 53/200 (26%), Positives = 85/200 (42%), Gaps = 24/200 (12%)

Query: 171 LALTFDSEGTIFAAGSENGNLRVFK-WPSLEIILNESEAHAS-VKDLSFSPDGKFLV-SL 227
           L++ F  +G + A+GS +G +R++       +     + H   V  LSFSPDG  LV   
Sbjct: 288 LSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGG 347

Query: 228 GNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNT 287
            + G  R+WDL +      L   ++ L  S  FSP         + +      ++  W+ 
Sbjct: 348 SDDGTIRLWDLRTGKPLKTLEGHSNVL--SVSFSPDGR------VVSSGSTDGTVRLWDL 399

Query: 288 TTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVT 347
           +T   +R        V+S + S DGK LA G++   I + D  +                
Sbjct: 400 STGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKS------------ 447

Query: 348 ALAFSYDSRALVSASMDSSV 367
            ++FS D + L S S D SV
Sbjct: 448 -VSFSPDGKVLASKSSDLSV 466

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 300 REPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALV 359
              V+    S DGKLLA G+  G I + D  + ++   + K H G V  +A S D   L 
Sbjct: 9   TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL-KGHTGPVRDVAASADGTYLA 67

Query: 360 SASMDSSVRV 369
           S S D ++R+
Sbjct: 68  SGSSDKTIRL 77

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 30/144 (20%), Positives = 58/144 (40%), Gaps = 12/144 (8%)

Query: 98  SNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKIS 157
             +        L+        ++  P G  ++    +   +  WD      ++       
Sbjct: 313 LETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLK------- 365

Query: 158 EKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSF 217
                 LE     L+++F  +G + ++GS +G +R++   +  ++ N     + V  L F
Sbjct: 366 -----TLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDF 420

Query: 218 SPDGKFLVSLGNRGPGRVWDLASS 241
           SPDGK L S  +    R+WDL +S
Sbjct: 421 SPDGKSLASGSSDNTIRLWDLKTS 444

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 16/34 (47%), Positives = 19/34 (55%)

Query: 336 TAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
               K H G VT++AFS D   L S S D +VRV
Sbjct: 4   LRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRV 37

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 36.5 bits (85), Expect = 8e-04
 Identities = 13/30 (43%), Positives = 20/30 (66%)

Query: 340 KAHLGIVTALAFSYDSRALVSASMDSSVRV 369
           K H G VT++AFS D + L S S D ++++
Sbjct: 9   KGHTGPVTSVAFSPDGKYLASGSDDGTIKL 38

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 340 KAHLGIVTALAFSYDSRALVSASMDSSVRV 369
           K H G VT +AFS D + L + S D +++V
Sbjct: 6   KGHTGGVTCVAFSPDGKLLATGSGDGTIKV 35

Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	406
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0771	398	consensus Prolactin regulatory element-binding pro	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0973	942	consensus Histone transcription regulator HIRA, WD	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	99.98
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.98
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.98
KOG0296	399	consensus Angio-associated migratory cell protein	99.98
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.98
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.98
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
KOG0645	312	consensus WD40 repeat protein [General function pr	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.95
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.95
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0643	327	consensus Translation initiation factor 3, subunit	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.94
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.94
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.94
KOG0639	705	consensus Transducin-like enhancer of split protei	99.94
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.94
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.94
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.94
KOG0646	476	consensus WD40 repeat protein [General function pr	99.94
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
KOG2055	514	consensus WD40 repeat protein [General function pr	99.94
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.94
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.93
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.93
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.93
KOG0639	705	consensus Transducin-like enhancer of split protei	99.93
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.93
KOG2096	420	consensus WD40 repeat protein [General function pr	99.93
KOG1539	910	consensus WD repeat protein [General function pred	99.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.93
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.93
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.93
KOG2055	514	consensus WD40 repeat protein [General function pr	99.93
KOG1274	933	consensus WD40 repeat protein [General function pr	99.93
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.92
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.92
KOG1539	910	consensus WD repeat protein [General function pred	99.92
KOG0646	476	consensus WD40 repeat protein [General function pr	99.92
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.92
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.92
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.92
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.91
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.91
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.91
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.91
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.91
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.91
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.91
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.91
KOG1274	933	consensus WD40 repeat protein [General function pr	99.91
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.9
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.9
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.9
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.9
KOG0267	825	consensus Microtubule severing protein katanin p80	99.9
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.9
KOG2048	691	consensus WD40 repeat protein [General function pr	99.9
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.9
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.9
KOG2048	691	consensus WD40 repeat protein [General function pr	99.89
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.89
KOG4328	498	consensus WD40 protein [Function unknown]	99.89
KOG1273	405	consensus WD40 repeat protein [General function pr	99.89
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.89
KOG1273	405	consensus WD40 repeat protein [General function pr	99.88
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.88
KOG4328	498	consensus WD40 protein [Function unknown]	99.88
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.88
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.87
KOG2096	420	consensus WD40 repeat protein [General function pr	99.87
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.87
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.87
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.87
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.87
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.86
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.86
PRK11028	330	6-phosphogluconolactonase; Provisional	99.86
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.85
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.85
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.84
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.84
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.84
KOG0649	325	consensus WD40 repeat protein [General function pr	99.83
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.82
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.82
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.81
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.8
KOG1188	376	consensus WD40 repeat protein [General function pr	99.8
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.8
COG2319	466	FOG: WD40 repeat [General function prediction only	99.8
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.8
PRK01742	429	tolB translocation protein TolB; Provisional	99.8
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.79
KOG4227	609	consensus WD40 repeat protein [General function pr	99.79
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.78
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.78
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.78
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.77
PRK03629	429	tolB translocation protein TolB; Provisional	99.77
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.76
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.76
COG2319	466	FOG: WD40 repeat [General function prediction only	99.76
KOG1963	792	consensus WD40 repeat protein [General function pr	99.76
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.76
KOG1188	376	consensus WD40 repeat protein [General function pr	99.75
PRK11028	330	6-phosphogluconolactonase; Provisional	99.75
KOG0649	325	consensus WD40 repeat protein [General function pr	99.75
PRK01742	429	tolB translocation protein TolB; Provisional	99.74
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.74
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.74
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.73
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.72
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.72
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.71
KOG2139	445	consensus WD40 repeat protein [General function pr	99.71
PRK05137	435	tolB translocation protein TolB; Provisional	99.71
PRK02889	427	tolB translocation protein TolB; Provisional	99.71
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.71
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.71
PRK04922	433	tolB translocation protein TolB; Provisional	99.7
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.7
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.7
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.7
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.69
PRK05137	435	tolB translocation protein TolB; Provisional	99.69
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.69
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.68
PRK03629	429	tolB translocation protein TolB; Provisional	99.68
PRK02889	427	tolB translocation protein TolB; Provisional	99.68
PRK04922	433	tolB translocation protein TolB; Provisional	99.68
KOG2321	703	consensus WD40 repeat protein [General function pr	99.67
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.67
KOG1310	758	consensus WD40 repeat protein [General function pr	99.66
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.66
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.65
PRK01029	428	tolB translocation protein TolB; Provisional	99.64
PRK00178	430	tolB translocation protein TolB; Provisional	99.63
KOG1963	792	consensus WD40 repeat protein [General function pr	99.63
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.62
KOG2139	445	consensus WD40 repeat protein [General function pr	99.62
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.62
KOG1310	758	consensus WD40 repeat protein [General function pr	99.62
PRK04792	448	tolB translocation protein TolB; Provisional	99.62
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.62
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.61
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.61
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.61
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.6
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.6
KOG4227	609	consensus WD40 repeat protein [General function pr	99.6
PRK01029	428	tolB translocation protein TolB; Provisional	99.59
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.59
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.58
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.58
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.56
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.56
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.56
PRK00178	430	tolB translocation protein TolB; Provisional	99.56
KOG1334	559	consensus WD40 repeat protein [General function pr	99.56
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.55
PRK04792	448	tolB translocation protein TolB; Provisional	99.54
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.53
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.53
KOG2321	703	consensus WD40 repeat protein [General function pr	99.52
KOG2315	566	consensus Predicted translation initiation factor	99.51
KOG4547	541	consensus WD40 repeat-containing protein [General	99.5
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.46
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.43
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.43
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.38
PRK04043	419	tolB translocation protein TolB; Provisional	99.36
PRK04043	419	tolB translocation protein TolB; Provisional	99.36
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.35
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.34
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.33
KOG2314	698	consensus Translation initiation factor 3, subunit	99.33
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.33
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.33
COG4946	668	Uncharacterized protein related to the periplasmic	99.31
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.3
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.28
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.28
COG4946	668	Uncharacterized protein related to the periplasmic	99.27
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.26
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.25
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.25
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.23
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.22
KOG2315	566	consensus Predicted translation initiation factor	99.22
KOG1334	559	consensus WD40 repeat protein [General function pr	99.22
KOG4547	541	consensus WD40 repeat-containing protein [General	99.16
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.16
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.15
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.14
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.13
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.13
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.11
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.1
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.1
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.08
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.06
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.03
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.0
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.0
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.99
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.98
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.97
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.95
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.95
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.93
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.92
KOG2314	698	consensus Translation initiation factor 3, subunit	98.88
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.87
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.87
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.87
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.86
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.84
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.83
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.82
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.78
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.77
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	98.73
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.73
KOG2695	425	consensus WD40 repeat protein [General function pr	98.73
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.72
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.72
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.7
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.7
PRK02888	635	nitrous-oxide reductase; Validated	98.7
KOG2695	425	consensus WD40 repeat protein [General function pr	98.7
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.69
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.68
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.65
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.65
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.64
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.58
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.57
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.57
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.56
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.56
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.5
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.49
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.48
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.47
COG3391	381	Uncharacterized conserved protein [Function unknow	98.47
PRK02888	635	nitrous-oxide reductase; Validated	98.47
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.45
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.44
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.42
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.42
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.32
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.29
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.29
COG3391	381	Uncharacterized conserved protein [Function unknow	98.28
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.25
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.24
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.23
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.23
PRK13616	591	lipoprotein LpqB; Provisional	98.23
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.23
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.22
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.22
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.18
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.17
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.14
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.14
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.09
KOG3621	726	consensus WD40 repeat-containing protein [General	98.05
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.04
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.01
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.99
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.99
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.95
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.95
KOG3621	726	consensus WD40 repeat-containing protein [General	97.95
PRK13616	591	lipoprotein LpqB; Provisional	97.89
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.85
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.84
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.82
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.79
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.78
KOG2395	644	consensus Protein involved in vacuole import and d	97.77
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.77
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.76
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.76
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.72
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.7
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.66
KOG2444	238	consensus WD40 repeat protein [General function pr	97.61
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.6
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.54
PRK10115	686	protease 2; Provisional	97.51
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.47
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.43
PRK10115	686	protease 2; Provisional	97.41
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.39
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.37
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.36
KOG2395	644	consensus Protein involved in vacuole import and d	97.23
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.21
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.17
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.17
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.16
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.11
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.11
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.05
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.04
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.94
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.89
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.87
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.84
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.8
PHA02713	557	hypothetical protein; Provisional	96.8
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.79
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.69
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.68
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.57
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.5
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.47
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	96.44
KOG2444	238	consensus WD40 repeat protein [General function pr	96.39
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.35
PHA02713	557	hypothetical protein; Provisional	96.31
PHA03098	534	kelch-like protein; Provisional	96.31
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.26
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.2
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.13
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.12
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.09
KOG2377	657	consensus Uncharacterized conserved protein [Funct	96.09
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.01
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.75
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.63
PRK13684	334	Ycf48-like protein; Provisional	95.59
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	95.52
COG5167	776	VID27 Protein involved in vacuole import and degra	95.51
PF14727	418	PHTB1_N: PTHB1 N-terminus	95.49
PHA03098	534	kelch-like protein; Provisional	95.24
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.23
PHA02790	480	Kelch-like protein; Provisional	95.23
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	95.22
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.2
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.17
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.01
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	94.78
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.41
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.38
COG4590	733	ABC-type uncharacterized transport system, permeas	94.32
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	94.15
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	93.69
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.63
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	93.52
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	93.49
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.47
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.26
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	93.24
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	93.03
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.01
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	92.86
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	92.73
COG5167	776	VID27 Protein involved in vacuole import and degra	92.65
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	92.64
COG1770	682	PtrB Protease II [Amino acid transport and metabol	92.55
PF14727	418	PHTB1_N: PTHB1 N-terminus	92.22
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.73
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	91.58
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	91.38
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	91.37
PHA02790	480	Kelch-like protein; Provisional	91.12
PRK13684	334	Ycf48-like protein; Provisional	90.83
PLN00033	398	photosystem II stability/assembly factor; Provisio	90.82
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	90.75
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	90.71
KOG2247	615	consensus WD40 repeat-containing protein [General	90.64
PF12768	281	Rax2: Cortical protein marker for cell polarity	90.62
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	90.58
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	90.48
PLN00033	398	photosystem II stability/assembly factor; Provisio	90.47
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	90.31
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	89.94
KOG2377	657	consensus Uncharacterized conserved protein [Funct	89.84
PF13449	326	Phytase-like: Esterase-like activity of phytase	89.44
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	89.19
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	89.17
KOG2247	615	consensus WD40 repeat-containing protein [General	89.17
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	88.67
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	88.36
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	88.24
COG1520	370	FOG: WD40-like repeat [Function unknown]	88.12
COG1520	370	FOG: WD40-like repeat [Function unknown]	88.07
COG5276	370	Uncharacterized conserved protein [Function unknow	88.04
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	87.66
KOG0783	1267	consensus Uncharacterized conserved protein, conta	87.52
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	87.49
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	87.36
COG4590	733	ABC-type uncharacterized transport system, permeas	86.99
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	86.9
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	86.39
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	86.06
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	86.03
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	85.83
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	85.75
COG1506	620	DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept	84.98
PF13449	326	Phytase-like: Esterase-like activity of phytase	84.74
COG5276	370	Uncharacterized conserved protein [Function unknow	84.48
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	83.84
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	83.76
KOG3616	1636	consensus Selective LIM binding factor [Transcript	82.43
KOG3522	925	consensus Predicted guanine nucleotide exchange fa	82.18
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	80.91

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.1e-44  Score=303.39  Aligned_cols=269  Identities=20%  Similarity=0.292  Sum_probs=240.5

Q ss_pred             CCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccC--CCeEEEEe-cCCeEEEEEec
Q 015490           67 RRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPH--GDGIICAL-QNSCRLFEWDE  143 (406)
Q Consensus        67 ~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~--~~~l~~~~-~~~~~i~~~~~  143 (406)
                      .++..+++++-+|.          +..|+...    .+.++++.+|...|.++.|+|.  +..+++++ |+++++|.++.
T Consensus       185 ~ds~~laT~swsG~----------~kvW~~~~----~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~  250 (459)
T KOG0272|consen  185 RDSKHLATGSWSGL----------VKVWSVPQ----CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ  250 (459)
T ss_pred             cCCCeEEEeecCCc----------eeEeecCC----cceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence            36667777655442          33444443    3578899999999999999997  45788887 99999998873


Q ss_pred             ccccceeecceeccceeeeccccc-CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCC
Q 015490          144 VENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGK  222 (406)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~  222 (406)
                                    ..+++.+.+| ..|..++|+|+|++|++++.|.+-++||++++..+....+|...|.+++|++||.
T Consensus       251 --------------e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS  316 (459)
T KOG0272|consen  251 --------------ETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS  316 (459)
T ss_pred             --------------CcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCc
Confidence                          3456666666 7899999999999999999999999999999999988889999999999999999


Q ss_pred             EEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCC
Q 015490          223 FLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREP  302 (406)
Q Consensus       223 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~  302 (406)
                      .+++|+.|..-+|||+++|+++..+.+| ...|..++|+|+|-      .+++++.|++++|||++..+.+.++..|..-
T Consensus       317 L~~tGGlD~~~RvWDlRtgr~im~L~gH-~k~I~~V~fsPNGy------~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nl  389 (459)
T KOG0272|consen  317 LAATGGLDSLGRVWDLRTGRCIMFLAGH-IKEILSVAFSPNGY------HLATGSSDNTCKVWDLRMRSELYTIPAHSNL  389 (459)
T ss_pred             eeeccCccchhheeecccCcEEEEeccc-ccceeeEeECCCce------EEeecCCCCcEEEeeecccccceecccccch
Confidence            9999999999999999999999999884 55688999999995      5899999999999999999999999999999


Q ss_pred             eEEEEEcC-CCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEE
Q 015490          303 VSSFNVSA-DGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTV  371 (406)
Q Consensus       303 i~~~~~sp-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~  371 (406)
                      |+.++|+| .|.+|++++.|++++||...++.++..+. +|.+.|.++..++|+.+++|++.|.++++|.
T Consensus       390 VS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLa-GHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  390 VSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLA-GHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             hhheEecccCCeEEEEcccCcceeeecCCCcccchhhc-CCccceEEEEeccCCceEEEeccCceeeecc
Confidence            99999999 78899999999999999999999999996 9999999999999999999999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.5e-43  Score=294.35  Aligned_cols=257  Identities=19%  Similarity=0.263  Sum_probs=220.8

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-  167 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  167 (406)
                      .+..||...    ..|..+.++|...|.|++|+|||+.|++|+ ++.+++|+-  .+++           ...+.+.+| 
T Consensus       138 TvR~WD~~T----eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp--ktg~-----------~~g~~l~gH~  200 (480)
T KOG0271|consen  138 TVRLWDLDT----ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP--KTGQ-----------QIGRALRGHK  200 (480)
T ss_pred             eEEeeccCC----CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC--CCCC-----------cccccccCcc
Confidence            444555544    348999999999999999999999999998 998888653  3332           233345555 


Q ss_pred             CcEEEEEECC-----CCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCe
Q 015490          168 GQQLALTFDS-----EGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSA  242 (406)
Q Consensus       168 ~~v~~~~~s~-----~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~  242 (406)
                      ..|++++|.|     ..++||+++.||+|+|||+..+.++..+.+|..+|+|+.|--+| +|++++.|++|++|+...|.
T Consensus       201 K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~  279 (480)
T KOG0271|consen  201 KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGK  279 (480)
T ss_pred             cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchh
Confidence            7899999976     56899999999999999999999999999999999999997655 89999999999999986543


Q ss_pred             eeeeccc-------------------------------------------------------------------------
Q 015490          243 VATPLAK-------------------------------------------------------------------------  249 (406)
Q Consensus       243 ~~~~~~~-------------------------------------------------------------------------  249 (406)
                      +.+.+.+                                                                         
T Consensus       280 ~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkp  359 (480)
T KOG0271|consen  280 LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKP  359 (480)
T ss_pred             HHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccc
Confidence            3322222                                                                         


Q ss_pred             -----CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcE
Q 015490          250 -----ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDI  324 (406)
Q Consensus       250 -----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i  324 (406)
                           .|...|..+.|+|+++      ++++++.|..|++||.++|+.+.++++|-..|+.++|+.|.++|++|+.|.++
T Consensus       360 i~rmtgHq~lVn~V~fSPd~r------~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTL  433 (480)
T KOG0271|consen  360 ITRMTGHQALVNHVSFSPDGR------YIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTL  433 (480)
T ss_pred             hhhhhchhhheeeEEECCCcc------EEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceE
Confidence                 1445677899999998      47888999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEE
Q 015490          325 SIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTV  371 (406)
Q Consensus       325 ~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~  371 (406)
                      ++||+++.+....+. +|...|.++.|+|||..+++|+.|..+++|.
T Consensus       434 Kvw~V~tkKl~~DLp-Gh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  434 KVWDVRTKKLKQDLP-GHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             EEEEeeeeeecccCC-CCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            999999999999986 9999999999999999999999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.6e-43  Score=294.26  Aligned_cols=254  Identities=20%  Similarity=0.309  Sum_probs=215.4

Q ss_pred             ceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccc-cCcEEEEEECCCCCEE
Q 015490          105 PVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLEN-VGQQLALTFDSEGTIF  182 (406)
Q Consensus       105 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l  182 (406)
                      +-..+.||.++|.|++|+|+|..|++|+ |.++|+|+.+.++.              ..+..+ ...|.|++|+|||+.|
T Consensus       107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp--------------~~t~KgH~~WVlcvawsPDgk~i  172 (480)
T KOG0271|consen  107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP--------------LFTCKGHKNWVLCVAWSPDGKKI  172 (480)
T ss_pred             eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc--------------ceeecCCccEEEEEEECCCcchh
Confidence            4456889999999999999999999997 99999998885432              233334 4789999999999999


Q ss_pred             EEeeCCCeEEEEeCCCcceE-eeeeccCCceeEEEEcc-----CCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEE
Q 015490          183 AAGSENGNLRVFKWPSLEII-LNESEAHASVKDLSFSP-----DGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFA  256 (406)
Q Consensus       183 ~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~i~~~~~s~-----~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~  256 (406)
                      |+|+.||+|++||..+++++ ..+.+|...|++++|.|     ..++|++++.||.++|||+..++++..+.+| ...|+
T Consensus       173 ASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgH-T~~VT  251 (480)
T KOG0271|consen  173 ASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGH-TASVT  251 (480)
T ss_pred             hccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccC-ccceE
Confidence            99999999999999988765 45677778999999965     6779999999999999999999999988875 45689


Q ss_pred             EEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEE------------------------------------------
Q 015490          257 SCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIR------------------------------------------  294 (406)
Q Consensus       257 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~------------------------------------------  294 (406)
                      |+.|--++       ++.+++.|++|++|+...+++.+                                          
T Consensus       252 CvrwGG~g-------liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~A  324 (480)
T KOG0271|consen  252 CVRWGGEG-------LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKA  324 (480)
T ss_pred             EEEEcCCc-------eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHH
Confidence            99998665       45677778888888766543332                                          


Q ss_pred             -------------------------------------EeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEE
Q 015490          295 -------------------------------------TKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTA  337 (406)
Q Consensus       295 -------------------------------------~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~  337 (406)
                                                           ...+|..-|..+.||||+++||+++-|..|++||.++|+.+..
T Consensus       325 l~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~las  404 (480)
T KOG0271|consen  325 LERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLAS  404 (480)
T ss_pred             HHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhh
Confidence                                                 2334445688999999999999999999999999999999999


Q ss_pred             eecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490          338 VKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       338 ~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~  381 (406)
                      +. +|-++|+.++|+.|.++|++||.|.++++|++++.+....+
T Consensus       405 fR-GHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DL  447 (480)
T KOG0271|consen  405 FR-GHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDL  447 (480)
T ss_pred             hh-hccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccC
Confidence            95 99999999999999999999999999999999998765443

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.5e-39  Score=257.19  Aligned_cols=260  Identities=20%  Similarity=0.294  Sum_probs=227.4

Q ss_pred             ccceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCCE
Q 015490          103 DQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTI  181 (406)
Q Consensus       103 ~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~  181 (406)
                      ..+.++++.....|..+.+.|+++.|++++...+|+|+++.....            ++.++.++ ..|+++.|..+|+.
T Consensus        30 G~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~------------Pv~t~e~h~kNVtaVgF~~dgrW   97 (311)
T KOG0315|consen   30 GICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPN------------PVATFEGHTKNVTAVGFQCDGRW   97 (311)
T ss_pred             CeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCC------------ceeEEeccCCceEEEEEeecCeE
Confidence            358889998899999999999999999999999999998876332            44455555 89999999999999


Q ss_pred             EEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEE
Q 015490          182 FAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFS  261 (406)
Q Consensus       182 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  261 (406)
                      +++|++||+++|||++...+.+ ...+..+|+++..+|+...|+++..+|.|++||+....+...+.......+.++...
T Consensus        98 MyTgseDgt~kIWdlR~~~~qR-~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~  176 (311)
T KOG0315|consen   98 MYTGSEDGTVKIWDLRSLSCQR-NYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVM  176 (311)
T ss_pred             EEecCCCceEEEEeccCcccch-hccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEc
Confidence            9999999999999999865554 445668999999999999999999999999999999888888877777889999999


Q ss_pred             cCCCCceEEEEEEEcCCCcEEEEEeCCCc------eEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCc-eE
Q 015490          262 PLNNEDYVLYIAAITDRGASIVTWNTTTW------KRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSL-QV  334 (406)
Q Consensus       262 ~~~~~~~~l~~~~~~~~~~~i~~~d~~~~------~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~-~~  334 (406)
                      |+|..      ++.....|..++|++-+.      +++..++.|.+.+..+.+|||+++||+++.|.+++||+.++. +.
T Consensus       177 ~dgsm------l~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kl  250 (311)
T KOG0315|consen  177 PDGSM------LAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKL  250 (311)
T ss_pred             CCCcE------EEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceee
Confidence            99984      455577899999998653      356678889999999999999999999999999999999988 55


Q ss_pred             EEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCch
Q 015490          335 RTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLN  382 (406)
Q Consensus       335 ~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~  382 (406)
                      ...+. +|...++.++||.||+||+|++.|+.+++|+++.++++...+
T Consensus       251 e~~l~-gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~  297 (311)
T KOG0315|consen  251 ELVLT-GHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQ  297 (311)
T ss_pred             EEEee-cCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecC
Confidence            55554 899999999999999999999999999999999999876543

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.9e-41  Score=284.65  Aligned_cols=251  Identities=18%  Similarity=0.205  Sum_probs=226.8

Q ss_pred             EEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCC--CCEEE
Q 015490          108 ELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSE--GTIFA  183 (406)
Q Consensus       108 ~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~--g~~l~  183 (406)
                      .--+.+.+|..+.|++|+..|++|+ +|.+++|....              ...++.+.+| ..+.++.|+|.  +..+|
T Consensus       170 SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~--------------~~~~~~l~gH~~~v~~~~fhP~~~~~~la  235 (459)
T KOG0272|consen  170 SQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQ--------------CNLLQTLRGHTSRVGAAVFHPVDSDLNLA  235 (459)
T ss_pred             hhccCCCcceeeEeecCCCeEEEeecCCceeEeecCC--------------cceeEEEeccccceeeEEEccCCCcccee
Confidence            3346788999999999999999998 99999987653              2344455555 88999999996  57899


Q ss_pred             EeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcC
Q 015490          184 AGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPL  263 (406)
Q Consensus       184 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (406)
                      +|+.||++++|++++...+..+.+|...|..++|+|+|++|++++.|.+-++||++++..+....+| ...+.+++|.++
T Consensus       236 t~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGH-s~~v~~iaf~~D  314 (459)
T KOG0272|consen  236 TASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGH-SKGVFSIAFQPD  314 (459)
T ss_pred             eeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhccc-ccccceeEecCC
Confidence            9999999999999998999999999999999999999999999999999999999998887776665 556889999999


Q ss_pred             CCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccc
Q 015490          264 NNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHL  343 (406)
Q Consensus       264 ~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  343 (406)
                      |.      ++++|+.|..-++||+++++++..+.+|..+|.++.|+|+|..||+|+.|++++|||++..+.+.++. +|.
T Consensus       315 GS------L~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip-AH~  387 (459)
T KOG0272|consen  315 GS------LAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP-AHS  387 (459)
T ss_pred             Cc------eeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecc-ccc
Confidence            98      68999999999999999999999999999999999999999999999999999999999999999986 999


Q ss_pred             cceEEEEEcC-CCCeEEEEECCCcEEEEEecCCcCCCC
Q 015490          344 GIVTALAFSY-DSRALVSASMDSSVRVTVIEDKKKSGG  380 (406)
Q Consensus       344 ~~v~~~~~sp-~~~~l~s~s~dg~i~iw~~~~~~~~~~  380 (406)
                      .-|+.+.|+| .|.+|+|++.|++++||...+...+..
T Consensus       388 nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ks  425 (459)
T KOG0272|consen  388 NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKS  425 (459)
T ss_pred             chhhheEecccCCeEEEEcccCcceeeecCCCcccchh
Confidence            9999999999 689999999999999999988776543

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=5.9e-39  Score=257.87  Aligned_cols=264  Identities=20%  Similarity=0.226  Sum_probs=223.5

Q ss_pred             cceeEEecCCCCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCC
Q 015490          104 QPVAELRTDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGT  180 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~  180 (406)
                      ....++++|++.|+.++..+.+..++..+  |..+.+|.+...+.+         .+.+++.+.+| ..|..+..++||+
T Consensus         6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~---------~G~~~r~~~GHsH~v~dv~~s~dg~   76 (315)
T KOG0279|consen    6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK---------YGVPVRRLTGHSHFVSDVVLSSDGN   76 (315)
T ss_pred             eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc---------cCceeeeeeccceEecceEEccCCc
Confidence            34568999999999999999877666655  666666665544211         34455556665 7799999999999


Q ss_pred             EEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEE
Q 015490          181 IFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRF  260 (406)
Q Consensus       181 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  260 (406)
                      +.++++.|+++++||+.+++..+.+.+|...|.+++|++|.+.+++|+.|++|++|+.............+...|.++.|
T Consensus        77 ~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrf  156 (315)
T KOG0279|consen   77 FALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRF  156 (315)
T ss_pred             eEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999996554444333333778999999


Q ss_pred             EcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeec
Q 015490          261 SPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKK  340 (406)
Q Consensus       261 ~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  340 (406)
                      +|+...    .++++++.|++|++||+++.+....+.+|.+.++.+++||||..+++|+.||.+.+||++.++.+..+  
T Consensus       157 sP~~~~----p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl--  230 (315)
T KOG0279|consen  157 SPNESN----PIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL--  230 (315)
T ss_pred             cCCCCC----cEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec--
Confidence            999744    36778899999999999999999999999999999999999999999999999999999999998887  


Q ss_pred             ccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCchH
Q 015490          341 AHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLNL  383 (406)
Q Consensus       341 ~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~  383 (406)
                      .|...|.+++|+|+...|+.+ .+..|+|||+++++.+..+.+
T Consensus       231 ~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~  272 (315)
T KOG0279|consen  231 EAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKL  272 (315)
T ss_pred             cCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccc
Confidence            499999999999986666655 556699999999988776654

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.3e-38  Score=255.14  Aligned_cols=273  Identities=20%  Similarity=0.243  Sum_probs=233.9

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVEN  146 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~  146 (406)
                      +.+.++.+.-.|          .+..||.-+    ...+..+.-...+|..++|+|.|.++++|+ |+...||.+...+.
T Consensus        66 Dsr~ivSaSqDG----------klIvWDs~T----tnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~  131 (343)
T KOG0286|consen   66 DSRRIVSASQDG----------KLIVWDSFT----TNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDA  131 (343)
T ss_pred             CcCeEEeeccCC----------eEEEEEccc----ccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccc
Confidence            677777654333          466677644    345666777789999999999999999999 99999999885532


Q ss_pred             cceeecceeccceeeeccccc-CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEcc-CCCEE
Q 015490          147 TEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSP-DGKFL  224 (406)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l  224 (406)
                      +.        ..+..+.+.+| +.+.|+.|-+|+ .|++++.|.+..+||+++++.+..+.+|.+.|.+++++| +++.+
T Consensus       132 ~g--------~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntF  202 (343)
T KOG0286|consen  132 EG--------NVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTF  202 (343)
T ss_pred             cc--------cceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeE
Confidence            21        11223334444 889999999865 577999999999999999999999999999999999999 99999


Q ss_pred             EEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeec--CCC
Q 015490          225 VSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVV--REP  302 (406)
Q Consensus       225 ~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~  302 (406)
                      ++|+.|+..++||++.+.+.+.+.+|.. .|.+++|.|+|.      .++++++|++.++||++..+.+..+...  ..+
T Consensus       203 vSg~cD~~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~------afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~g  275 (343)
T KOG0286|consen  203 VSGGCDKSAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGD------AFATGSDDATCRLYDLRADQELAVYSHDSIICG  275 (343)
T ss_pred             EecccccceeeeeccCcceeEeeccccc-ccceEEEccCCC------eeeecCCCceeEEEeecCCcEEeeeccCcccCC
Confidence            9999999999999999999999997654 588999999997      4789999999999999998888777643  367


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEE
Q 015490          303 VSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTV  371 (406)
Q Consensus       303 i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~  371 (406)
                      |++++||..|++|++|..|.++.+||.-.++....+. +|...|.++..+|||..|+|||.|.+++||.
T Consensus       276 itSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~-GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  276 ITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLA-GHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             ceeEEEcccccEEEeeecCCceeEeeccccceEEEee-ccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            9999999999999999999999999999999999996 9999999999999999999999999999994

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=4.3e-39  Score=292.37  Aligned_cols=271  Identities=19%  Similarity=0.283  Sum_probs=232.6

Q ss_pred             CccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEeccccc------ceeec------------ceecccee
Q 015490          100 SLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENT------EIRRL------------GVKISEKV  160 (406)
Q Consensus       100 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~------~~~~~------------~~~~~~~~  160 (406)
                      .++.-...++......++|..|++|++.+|+|. +..+++|.+.....+      ....+            +.......
T Consensus       365 ~lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~  444 (707)
T KOG0263|consen  365 SLPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTS  444 (707)
T ss_pred             CCCcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCcee
Confidence            333445666666778899999999999888886 888899888743211      11111            11111122


Q ss_pred             eecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCC
Q 015490          161 LSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLAS  240 (406)
Q Consensus       161 ~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~  240 (406)
                      ..-..|.++|..+.|+|+.++|+++++|+++++|.+.+..++..+.+|..+|+++.|+|-|-++|++|.|++.++|....
T Consensus       445 ~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~  524 (707)
T KOG0263|consen  445 RTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH  524 (707)
T ss_pred             EEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc
Confidence            22344569999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC
Q 015490          241 SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA  320 (406)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~  320 (406)
                      ..+.+.+.+|.. .+.|+.|+|+..+      +++|+.|.++++||..++..++.|.+|.++|.+++|||+|++|++|+.
T Consensus       525 ~~PlRifaghls-DV~cv~FHPNs~Y------~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~e  597 (707)
T KOG0263|consen  525 NKPLRIFAGHLS-DVDCVSFHPNSNY------VATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDE  597 (707)
T ss_pred             CCchhhhccccc-ccceEEECCcccc------cccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeeccc
Confidence            888888877654 5889999999984      788899999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCC
Q 015490          321 SGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKS  378 (406)
Q Consensus       321 dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~  378 (406)
                      ||.|.+||+.+++.+..+. +|.+.|.++.|+.||..||+|+.|++|++||+......
T Consensus       598 d~~I~iWDl~~~~~v~~l~-~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~  654 (707)
T KOG0263|consen  598 DGLIKIWDLANGSLVKQLK-GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL  654 (707)
T ss_pred             CCcEEEEEcCCCcchhhhh-cccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence            9999999999999999996 89999999999999999999999999999999876654

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.3e-38  Score=268.30  Aligned_cols=272  Identities=15%  Similarity=0.164  Sum_probs=230.4

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVEN  146 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~  146 (406)
                      .++-++++...|+          +..|+...    -.....++.|..+|+++.|++++.++++|. ++.+++|..+.+.-
T Consensus       107 eGRRLltgs~SGE----------FtLWNg~~----fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV  172 (464)
T KOG0284|consen  107 EGRRLLTGSQSGE----------FTLWNGTS----FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV  172 (464)
T ss_pred             CCceeEeeccccc----------EEEecCce----eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh
Confidence            6677777755553          33333322    112335678999999999999999999996 77778876554321


Q ss_pred             cceeecceeccceeeeccccc-CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEE
Q 015490          147 TEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLV  225 (406)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  225 (406)
                      +.              ...++ ..|++++|||+...|++++.||+|+|||....+....+.+|.-.|.+++|+|....|+
T Consensus       173 k~--------------~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLia  238 (464)
T KOG0284|consen  173 KI--------------IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIA  238 (464)
T ss_pred             HH--------------hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeE
Confidence            11              12244 7899999999999999999999999999988888878888888999999999999999


Q ss_pred             EEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEE
Q 015490          226 SLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSS  305 (406)
Q Consensus       226 s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~  305 (406)
                      +++.|..|++||.+++.++.++..| ...|..+.|+++++      ++++++.|..++++|+++.+.+.++++|+..+++
T Consensus       239 sgskDnlVKlWDprSg~cl~tlh~H-KntVl~~~f~~n~N------~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~  311 (464)
T KOG0284|consen  239 SGSKDNLVKLWDPRSGSCLATLHGH-KNTVLAVKFNPNGN------WLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTS  311 (464)
T ss_pred             EccCCceeEeecCCCcchhhhhhhc-cceEEEEEEcCCCC------eeEEccCCceEEEEehhHhHHHHHhhcchhhhee
Confidence            9999999999999999999998765 55688999999996      5678899999999999999999999999999999


Q ss_pred             EEEcC-CCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490          306 FNVSA-DGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIED  374 (406)
Q Consensus       306 ~~~sp-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~  374 (406)
                      +.|+| ...++.+|+.||.|..|.+...+++..+..+|...|++++|+|=|..|++|+.|.++++|.-..
T Consensus       312 ~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~r  381 (464)
T KOG0284|consen  312 LTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNR  381 (464)
T ss_pred             eccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCC
Confidence            99999 5678889999999999999988888888779999999999999999999999999999997643

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2e-35  Score=237.62  Aligned_cols=249  Identities=19%  Similarity=0.283  Sum_probs=207.2

Q ss_pred             cccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCC
Q 015490          102 SDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEG  179 (406)
Q Consensus       102 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g  179 (406)
                      ...+++.+.||+..|..+..++||.+.++++ |+.+++|+...              .+..+.+. |...|.+++|++|.
T Consensus        52 ~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~--------------g~~t~~f~GH~~dVlsva~s~dn  117 (315)
T KOG0279|consen   52 YGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLAT--------------GESTRRFVGHTKDVLSVAFSTDN  117 (315)
T ss_pred             cCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecC--------------CcEEEEEEecCCceEEEEecCCC
Confidence            3568899999999999999999999999988 99999987764              22333344 44789999999999


Q ss_pred             CEEEEeeCCCeEEEEeCCCcceEeeeecc--CCceeEEEEccC--CCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceE
Q 015490          180 TIFAAGSENGNLRVFKWPSLEIILNESEA--HASVKDLSFSPD--GKFLVSLGNRGPGRVWDLASSAVATPLAKENDELF  255 (406)
Q Consensus       180 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~i~~~~~s~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~  255 (406)
                      +.+++|+.|.+|++|+.... +..++..+  ..-|+|+.|+|+  ..+|++++.|+++++||+++-+....+.++ ...+
T Consensus       118 ~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh-~~~v  195 (315)
T KOG0279|consen  118 RQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGH-SGYV  195 (315)
T ss_pred             ceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccc-cccE
Confidence            99999999999999997654 44444443  568999999998  679999999999999999998888887764 5578


Q ss_pred             EEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEE
Q 015490          256 ASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVR  335 (406)
Q Consensus       256 ~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~  335 (406)
                      +.++++|||.      +.++++.||.+.+||++.++.+..+. +...|.+++|+|+.-+|+.+. +..|+|||+.+...+
T Consensus       196 ~t~~vSpDGs------lcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v  267 (315)
T KOG0279|consen  196 NTVTVSPDGS------LCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVV  267 (315)
T ss_pred             EEEEECCCCC------EEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhh
Confidence            9999999998      57889999999999999999988876 457899999999976666655 555999999998877


Q ss_pred             EEeeccc--------ccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490          336 TAVKKAH--------LGIVTALAFSYDSRALVSASMDSSVRVTVIED  374 (406)
Q Consensus       336 ~~~~~~~--------~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~  374 (406)
                      ..+....        .....+++|++||..|++|-.|+.|++|.+..
T Consensus       268 ~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~~  314 (315)
T KOG0279|consen  268 EELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVAK  314 (315)
T ss_pred             hhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence            6664211        12245889999999999999999999999853

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.3e-35  Score=267.96  Aligned_cols=258  Identities=22%  Similarity=0.330  Sum_probs=225.7

Q ss_pred             cceeEEecCCCCceEEEEccCCCeEEEEecC--CeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCE
Q 015490          104 QPVAELRTDSDLPYRMAIHPHGDGIICALQN--SCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTI  181 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  181 (406)
                      ..++.+.-....|..++|+..|.+++.++.+  .+-||.|...             .-.++...|...++++++||||++
T Consensus       298 ~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE-------------sYVlKQQgH~~~i~~l~YSpDgq~  364 (893)
T KOG0291|consen  298 NLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE-------------SYVLKQQGHSDRITSLAYSPDGQL  364 (893)
T ss_pred             eEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc-------------ceeeeccccccceeeEEECCCCcE
Confidence            4677777788899999999999999999865  6667777642             223333345588999999999999


Q ss_pred             EEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEE
Q 015490          182 FAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFS  261 (406)
Q Consensus       182 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  261 (406)
                      +|+|+.||.|+|||...+-|..++..|...|+.+.|+..|+.+++++-||+|+.||+...+..+++..+......+++..
T Consensus       365 iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD  444 (893)
T KOG0291|consen  365 IATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVD  444 (893)
T ss_pred             EEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEc
Confidence            99999999999999999999999999999999999999999999999999999999999999999988888888899999


Q ss_pred             cCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCc-eEEEEeec
Q 015490          262 PLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSL-QVRTAVKK  340 (406)
Q Consensus       262 ~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~  340 (406)
                      |.|.-     +.+.+-+.-.|.+|++++|+.+..+.+|.++|.+++|+|++..|++++.|.+|++||+-.. ....++. 
T Consensus       445 ~sGel-----V~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-  518 (893)
T KOG0291|consen  445 PSGEL-----VCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-  518 (893)
T ss_pred             CCCCE-----EEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-
Confidence            99972     4444455568999999999999999999999999999999999999999999999998654 3444553 


Q ss_pred             ccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490          341 AHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       341 ~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~  381 (406)
                       +...+..++|+|||+-|++++.||.|.+||.+.+..++.+
T Consensus       519 -i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~I  558 (893)
T KOG0291|consen  519 -IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSI  558 (893)
T ss_pred             -eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccc
Confidence             7778999999999999999999999999999988877544

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.3e-35  Score=238.71  Aligned_cols=256  Identities=14%  Similarity=0.193  Sum_probs=219.0

Q ss_pred             ceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEE
Q 015490          105 PVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFA  183 (406)
Q Consensus       105 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  183 (406)
                      ..+++++|.+.|+++.|++|.+++++++ |+.+.|  ||.-+....+.+.+           ....|..++|+|.|+++|
T Consensus        47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIv--WDs~TtnK~haipl-----------~s~WVMtCA~sPSg~~VA  113 (343)
T KOG0286|consen   47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIV--WDSFTTNKVHAIPL-----------PSSWVMTCAYSPSGNFVA  113 (343)
T ss_pred             eEEEecccccceeeeEecCCcCeEEeeccCCeEEE--EEcccccceeEEec-----------CceeEEEEEECCCCCeEE
Confidence            4478999999999999999999999997 665555  55555554444433           346789999999999999


Q ss_pred             EeeCCCeEEEEeCCCc------ceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEE
Q 015490          184 AGSENGNLRVFKWPSL------EIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFAS  257 (406)
Q Consensus       184 ~~~~dg~i~vwd~~~~------~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  257 (406)
                      +|+-|+...||++.+.      +..+.+.+|.+-+.++.|.+|+ +|+++|.|.+..+||+++++....+.+|.. .|.+
T Consensus       114 cGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~g-DV~s  191 (343)
T KOG0286|consen  114 CGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTG-DVMS  191 (343)
T ss_pred             ecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcc-cEEE
Confidence            9999999999999754      3445678888899999998855 689999999999999999999999987655 4779


Q ss_pred             EEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEE
Q 015490          258 CRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTA  337 (406)
Q Consensus       258 ~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~  337 (406)
                      ++++|...+     ..++++-|+..++||++.+.++++|.+|...|.+++|.|+|.-+++|+.|++.++||++..+.+..
T Consensus       192 lsl~p~~~n-----tFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~  266 (343)
T KOG0286|consen  192 LSLSPSDGN-----TFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAV  266 (343)
T ss_pred             EecCCCCCC-----eEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEee
Confidence            999994333     467788899999999999999999999999999999999999999999999999999999988888


Q ss_pred             eec-ccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCC
Q 015490          338 VKK-AHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGG  380 (406)
Q Consensus       338 ~~~-~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~  380 (406)
                      +.. .-..+|++++||..|++|++|..|.++.+||.-.++.++.
T Consensus       267 ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~  310 (343)
T KOG0286|consen  267 YSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGV  310 (343)
T ss_pred             eccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEE
Confidence            752 2245799999999999999999999999999988776543

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.2e-35  Score=243.28  Aligned_cols=264  Identities=18%  Similarity=0.232  Sum_probs=230.1

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-cc
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NV  167 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  167 (406)
                      .+..||..+.    +....++||++.|..++|+..|+++++++ |-.+++|+.+.             ..++++.+. |.
T Consensus       131 tikv~D~~tg----~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~-------------~~~c~ks~~gh~  193 (406)
T KOG0295|consen  131 TIKVFDTETG----ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDT-------------FFRCIKSLIGHE  193 (406)
T ss_pred             eEEEEEccch----hhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHH-------------HHHHHHHhcCcc
Confidence            6777787764    45788999999999999999999999887 55577877654             223333333 44


Q ss_pred             CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeec
Q 015490          168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPL  247 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  247 (406)
                      ..|.++.|-|.|.++++++.|.+|+.|++.++-++..+.+|...|..++.+.||..+++++.|.++++|-+.++++...+
T Consensus       194 h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~l  273 (406)
T KOG0295|consen  194 HGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAEL  273 (406)
T ss_pred             cceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhh
Confidence            77999999999999999999999999999999999999999999999999999999999999999999999999887777


Q ss_pred             ccCCcceEEEEEEEcCCCCceE---------EEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEE
Q 015490          248 AKENDELFASCRFSPLNNEDYV---------LYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVG  318 (406)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~---------l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~  318 (406)
                      ..+ ..++.+++|.|......+         .-++++++.|++|++||+.++.++.++.+|...|..++|+|.|+||+++
T Consensus       274 R~h-Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sc  352 (406)
T KOG0295|consen  274 REH-EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSC  352 (406)
T ss_pred             hcc-ccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEE
Confidence            754 557889999875432111         1146778899999999999999999999999999999999999999999


Q ss_pred             eCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEe
Q 015490          319 TASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVI  372 (406)
Q Consensus       319 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~  372 (406)
                      .+|+++++||+++.++...+. .|..-|+++.|+.+..+++||+-|.++++|.-
T Consensus       353 aDDktlrvwdl~~~~cmk~~~-ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  353 ADDKTLRVWDLKNLQCMKTLE-AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             ecCCcEEEEEeccceeeeccC-CCcceeEEEecCCCCceEEeccccceeeeeec
Confidence            999999999999999999997 89999999999999999999999999999974

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3.3e-35  Score=252.03  Aligned_cols=243  Identities=15%  Similarity=0.205  Sum_probs=216.7

Q ss_pred             CCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCCEEEEeeCCCe
Q 015490          113 SDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIFAAGSENGN  190 (406)
Q Consensus       113 ~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~  190 (406)
                      +..|++++|+.+|..|++|. +|.++||+.+..               .+.++. |.++|.++.|+.+|.+|++++.|++
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~---------------l~~tl~~HkgPI~slKWnk~G~yilS~~vD~t  299 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGN---------------LISTLGQHKGPIFSLKWNKKGTYILSGGVDGT  299 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEecCch---------------hhhhhhccCCceEEEEEcCCCCEEEeccCCcc
Confidence            46899999999999999998 999999876532               222333 5599999999999999999999999


Q ss_pred             EEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEE
Q 015490          191 LRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVL  270 (406)
Q Consensus       191 i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  270 (406)
                      +.+||..++.....+..|..+-.++.|-.+. .+++++.|+.|+|+.+....++.++.+| ...|.++.|+|.+.     
T Consensus       300 tilwd~~~g~~~q~f~~~s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~P~~t~~GH-~g~V~alk~n~tg~-----  372 (524)
T KOG0273|consen  300 TILWDAHTGTVKQQFEFHSAPALDVDWQSND-EFATSSTDGCIHVCKVGEDRPVKTFIGH-HGEVNALKWNPTGS-----  372 (524)
T ss_pred             EEEEeccCceEEEeeeeccCCccceEEecCc-eEeecCCCceEEEEEecCCCcceeeecc-cCceEEEEECCCCc-----
Confidence            9999999999888888777776889997554 6899999999999999999999999984 55688999999997     


Q ss_pred             EEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCC---------CEEEEEeCCCcEEEEECCCceEEEEeecc
Q 015490          271 YIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADG---------KLLAVGTASGDISIIDSSSLQVRTAVKKA  341 (406)
Q Consensus       271 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  341 (406)
                       ++++++.|+++++|.+........+..|...|..+.|+|+|         ..+++++.|++|++||+..+.++..+. .
T Consensus       373 -LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~-k  450 (524)
T KOG0273|consen  373 -LLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLM-K  450 (524)
T ss_pred             -eEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeec-c
Confidence             67888999999999999989999999999999999999964         478999999999999999999999996 7


Q ss_pred             cccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCC
Q 015490          342 HLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSG  379 (406)
Q Consensus       342 ~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~  379 (406)
                      |..+|.+++|+|+|+++++|+.||.|.+|++++++...
T Consensus       451 H~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~  488 (524)
T KOG0273|consen  451 HQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVK  488 (524)
T ss_pred             CCCceEEEEecCCCcEEEecCCCCeeEeccccchheeE
Confidence            99999999999999999999999999999999988654

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-34  Score=246.12  Aligned_cols=235  Identities=41%  Similarity=0.668  Sum_probs=194.4

Q ss_pred             EEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecc-
Q 015490          170 QLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLA-  248 (406)
Q Consensus       170 v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-  248 (406)
                      -.+++|+.+|..+++|+.||++|||++.+...+.....|+..|.+++|+|||+.|++.+.| ..+||+.+++..+.... 
T Consensus       147 ~k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  147 QKVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             ceEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            3789999999999999999999999999988888888999999999999999999999999 99999999997777665 


Q ss_pred             cCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceE-----EEEeeecCCCeEEEEEcCCCCEEEEEeCCCc
Q 015490          249 KENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKR-----IRTKQVVREPVSSFNVSADGKLLAVGTASGD  323 (406)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~-----~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~  323 (406)
                      ...+..+..|.|+.++.. ..+++++.....+.|..||+..++.     .++.......|++++.+++|++++.|+.||.
T Consensus       226 ~~k~~~~~~cRF~~d~~~-~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGs  304 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSVDNAQ-ETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGS  304 (398)
T ss_pred             cccchhhhhceecccCCC-ceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCc
Confidence            344455778999988866 5677788888888888888765432     1122222357999999999999999999999


Q ss_pred             EEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecC------C--cCCCCchHHH-HHHHHHHHH
Q 015490          324 ISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIED------K--KKSGGLNLWI-IIFILLLAM  394 (406)
Q Consensus       324 i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~------~--~~~~~~~~~~-~~~~~~~~~  394 (406)
                      |-|++..+.+.+...++.|...|+.+.|+||.+++++.+.|....|..+.-      +  .....++.|. +++++++++
T Consensus       305 Vai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~~~~~~~~~~~~~~~~~~~lL~~l~~I~  384 (398)
T KOG0771|consen  305 VAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDKTMQLHRLPKRRKIPAWLALLFVLSYII  384 (398)
T ss_pred             EEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeecccccccccccchhhhHHHHHHHHHHHHH
Confidence            999999999999999889999999999999999999999999999998865      2  2335667774 444455555


Q ss_pred             HH-HHHHhcCCCC
Q 015490          395 AA-YFVKAKGIIP  406 (406)
Q Consensus       395 ~~-~~~~~~~~~~  406 (406)
                      ++ |+++..|+++
T Consensus       385 ~~~y~~~s~gii~  397 (398)
T KOG0771|consen  385 AYFYLLNSHGIIF  397 (398)
T ss_pred             HHHHHHhhcceec
Confidence            55 7788888764

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=7.3e-34  Score=236.59  Aligned_cols=261  Identities=18%  Similarity=0.189  Sum_probs=212.6

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccC
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVG  168 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (406)
                      ..+.|+..+.    ....++.+|.+.|+++.|+.+|.+|++|. ++.++||....  +.....+           ...-.
T Consensus        87 ~AflW~~~~g----e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~st--g~~~~~~-----------~~e~~  149 (399)
T KOG0296|consen   87 LAFLWDISTG----EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVST--GGEQWKL-----------DQEVE  149 (399)
T ss_pred             eEEEEEccCC----cceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEccc--CceEEEe-----------ecccC
Confidence            4567777663    36788999999999999999999999997 88888876553  3222221           12336


Q ss_pred             cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecc
Q 015490          169 QQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLA  248 (406)
Q Consensus       169 ~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  248 (406)
                      .+.-+.|+|.+..|+.|+.||.+.+|.+.++.....+.+|..++++=.|.|+|++++++..||+|++||..++++...+.
T Consensus       150 dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~  229 (399)
T KOG0296|consen  150 DIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKIT  229 (399)
T ss_pred             ceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEec
Confidence            78889999999999999999999999999987777888988899999999999999999999999999999998877665


Q ss_pred             cCCcce--------------------------------------------------EEEEEEEcCCCCceEEEEEEEcCC
Q 015490          249 KENDEL--------------------------------------------------FASCRFSPLNNEDYVLYIAAITDR  278 (406)
Q Consensus       249 ~~~~~~--------------------------------------------------~~~~~~~~~~~~~~~l~~~~~~~~  278 (406)
                      ......                                                  +.++.+.|...   .+-+++.++-
T Consensus       230 ~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss---~lpL~A~G~v  306 (399)
T KOG0296|consen  230 QAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSS---KLPLAACGSV  306 (399)
T ss_pred             ccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccc---ccchhhcccc
Confidence            211100                                                  11111222211   1335777888


Q ss_pred             CcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeE
Q 015490          279 GASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRAL  358 (406)
Q Consensus       279 ~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  358 (406)
                      ||+|.+||+...+...... |...|..+.|-+ ..+|++++.+|.|+.||.++|+.+..+. +|...|.+++.+|+.+++
T Consensus       307 dG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~-GH~~~Il~f~ls~~~~~v  383 (399)
T KOG0296|consen  307 DGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYT-GHQMGILDFALSPQKRLV  383 (399)
T ss_pred             cceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEe-cCchheeEEEEcCCCcEE
Confidence            9999999999877655554 667799999998 7899999999999999999999999996 999999999999999999


Q ss_pred             EEEECCCcEEEEEec
Q 015490          359 VSASMDSSVRVTVIE  373 (406)
Q Consensus       359 ~s~s~dg~i~iw~~~  373 (406)
                      +|+|.|++.+||++.
T Consensus       384 vT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  384 VTVSDDNTALVFEVP  398 (399)
T ss_pred             EEecCCCeEEEEecC
Confidence            999999999999875

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=8.9e-36  Score=251.21  Aligned_cols=250  Identities=15%  Similarity=0.227  Sum_probs=215.5

Q ss_pred             CCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCe
Q 015490          112 DSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGN  190 (406)
Q Consensus       112 h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  190 (406)
                      -...|..+.|.|+|+.|++|+ .|...+|+-..-..+.+             ...|...|+++.|+++|.++++|+.+|.
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEti-------------lQaHDs~Vr~m~ws~~g~wmiSgD~gG~  161 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETI-------------LQAHDSPVRTMKWSHNGTWMISGDKGGM  161 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHH-------------hhhhcccceeEEEccCCCEEEEcCCCce
Confidence            346789999999999999997 88888876532221111             1236689999999999999999999999


Q ss_pred             EEEEeCCCcceEeeeeccC-CceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceE
Q 015490          191 LRVFKWPSLEIILNESEAH-ASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYV  269 (406)
Q Consensus       191 i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (406)
                      |++|+..- ..+..+..|+ ..|++++|+|+...++++++||+|+|||....+....+.+ ++..+.++.|+|...    
T Consensus       162 iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~G-HgwdVksvdWHP~kg----  235 (464)
T KOG0284|consen  162 IKYWQPNM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRG-HGWDVKSVDWHPTKG----  235 (464)
T ss_pred             EEecccch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheecc-CCCCcceeccCCccc----
Confidence            99999654 4455566666 5999999999999999999999999999998888777765 566789999999887    


Q ss_pred             EEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEE
Q 015490          270 LYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTAL  349 (406)
Q Consensus       270 l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~  349 (406)
                        ++++++.|..|++||.+++.++.++..|+..|..+.|+|++++|++++.|..++++|+++.+.+..+. +|...|+++
T Consensus       236 --LiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r-~Hkkdv~~~  312 (464)
T KOG0284|consen  236 --LIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYR-GHKKDVTSL  312 (464)
T ss_pred             --eeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhh-cchhhheee
Confidence              57888999999999999999999999999999999999999999999999999999999888888885 999999999


Q ss_pred             EEcCC-CCeEEEEECCCcEEEEEecCCcCCCCchH
Q 015490          350 AFSYD-SRALVSASMDSSVRVTVIEDKKKSGGLNL  383 (406)
Q Consensus       350 ~~sp~-~~~l~s~s~dg~i~iw~~~~~~~~~~~~~  383 (406)
                      .|+|- ..+|.+|+.||.|..|.+...+++..++.
T Consensus       313 ~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~  347 (464)
T KOG0284|consen  313 TWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP  347 (464)
T ss_pred             ccccccccceeeccCCCceEEEeccccccccCCCc
Confidence            99994 56788999999999999997777766553

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.4e-34  Score=240.72  Aligned_cols=257  Identities=17%  Similarity=0.267  Sum_probs=226.8

Q ss_pred             cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCCE
Q 015490          104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTI  181 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~  181 (406)
                      .....+.+|..+|+.+-|+|+-..+++++ +.++++|+..              +++....+++| +.+..++|+..|++
T Consensus        99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~--------------tg~~e~~LrGHt~sv~di~~~a~Gk~  164 (406)
T KOG0295|consen   99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTE--------------TGELERSLRGHTDSVFDISFDASGKY  164 (406)
T ss_pred             CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEcc--------------chhhhhhhhccccceeEEEEecCccE
Confidence            45667888999999999999988777776 7777776655              33334445555 77999999999999


Q ss_pred             EEEeeCCCeEEEEeCCC-cceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEE
Q 015490          182 FAAGSENGNLRVFKWPS-LEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRF  260 (406)
Q Consensus       182 l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  260 (406)
                      +++++.|-.+++||.++ .+++....+|...|.+++|-|.|.+|++++.|.+|+.|++.++.++.++.++.. .+..++.
T Consensus       165 l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e-wvr~v~v  243 (406)
T KOG0295|consen  165 LATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE-WVRMVRV  243 (406)
T ss_pred             EEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchH-hEEEEEe
Confidence            99999998899999976 556677778888999999999999999999999999999999999999997654 7888999


Q ss_pred             EcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCC---------------CCEEEEEeCCCcEE
Q 015490          261 SPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSAD---------------GKLLAVGTASGDIS  325 (406)
Q Consensus       261 ~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~---------------~~~l~~~~~dg~i~  325 (406)
                      +.||.      ++++++.|.+|++|-..++++...++.|..+|.+++|.|.               +.++.+++.|++|+
T Consensus       244 ~~DGt------i~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk  317 (406)
T KOG0295|consen  244 NQDGT------IIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIK  317 (406)
T ss_pred             cCCee------EEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEE
Confidence            98887      7889999999999999999888899999999999999773               25899999999999


Q ss_pred             EEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCch
Q 015490          326 IIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLN  382 (406)
Q Consensus       326 i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~  382 (406)
                      +||+.++.++.++. +|...|.+++|+|.|+||+++.+|+++++||+++.+.+..++
T Consensus       318 ~wdv~tg~cL~tL~-ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~  373 (406)
T KOG0295|consen  318 IWDVSTGMCLFTLV-GHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE  373 (406)
T ss_pred             EEeccCCeEEEEEe-cccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC
Confidence            99999999999997 999999999999999999999999999999999998876665

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2e-32  Score=219.51  Aligned_cols=252  Identities=16%  Similarity=0.207  Sum_probs=203.4

Q ss_pred             ceeEEecCCCCceEEEEccC-CCeEEEEe-cCCeEEEEEec-ccccceeecceeccceeeecccccCcEEEEEECCCCCE
Q 015490          105 PVAELRTDSDLPYRMAIHPH-GDGIICAL-QNSCRLFEWDE-VENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTI  181 (406)
Q Consensus       105 ~~~~~~~h~~~v~~~~~sp~-~~~l~~~~-~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  181 (406)
                      .++.+.+|.+.+..++|+|- |..|++++ |+.++||.... .+-....          +..-.|...|++++|+|.|++
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~----------vld~~hkrsVRsvAwsp~g~~   75 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKT----------VLDDGHKRSVRSVAWSPHGRY   75 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEE----------eccccchheeeeeeecCCCcE
Confidence            56788999999999999998 77788877 88899987652 1111111          111135578999999999999


Q ss_pred             EEEeeCCCeEEEEeCCC--cceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCe---eeeecccCCcceEE
Q 015490          182 FAAGSENGNLRVFKWPS--LEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSA---VATPLAKENDELFA  256 (406)
Q Consensus       182 l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~---~~~~~~~~~~~~~~  256 (406)
                      ||+|+.|.++.||.-..  .+++..+.+|...|.+++|+++|++||++++|+.|.||.+..+.   +...+..| ...+.
T Consensus        76 La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~H-tqDVK  154 (312)
T KOG0645|consen   76 LASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEH-TQDVK  154 (312)
T ss_pred             EEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccc-ccccc
Confidence            99999999999998653  46788899999999999999999999999999999999997543   44455544 45688


Q ss_pred             EEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC---CceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--
Q 015490          257 SCRFSPLNNEDYVLYIAAITDRGASIVTWNTT---TWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSS--  331 (406)
Q Consensus       257 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~---~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~--  331 (406)
                      .+.|+|...      ++++++.|.+|++|+-.   ...++.++.+|...|.+++|++.|..|++++.|++++||.+.+  
T Consensus       155 ~V~WHPt~d------lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~  228 (312)
T KOG0645|consen  155 HVIWHPTED------LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL  228 (312)
T ss_pred             EEEEcCCcc------eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc
Confidence            999999876      67888999999999765   5678999999999999999999999999999999999998321  


Q ss_pred             -----ceE------------------EEEee-----------------cccccceEEEEEcCC-CCeEEEEECCCcEEEE
Q 015490          332 -----LQV------------------RTAVK-----------------KAHLGIVTALAFSYD-SRALVSASMDSSVRVT  370 (406)
Q Consensus       332 -----~~~------------------~~~~~-----------------~~~~~~v~~~~~sp~-~~~l~s~s~dg~i~iw  370 (406)
                           ++.                  +..+.                 ..|...|++++|.|. ...|++|+.||.|++|
T Consensus       229 ~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W  308 (312)
T KOG0645|consen  229 SGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFW  308 (312)
T ss_pred             chhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEE
Confidence                 110                  00010                 457788999999994 6789999999999999


Q ss_pred             Eec
Q 015490          371 VIE  373 (406)
Q Consensus       371 ~~~  373 (406)
                      .+.
T Consensus       309 ~l~  311 (312)
T KOG0645|consen  309 ELE  311 (312)
T ss_pred             Eec
Confidence            875

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.5e-32  Score=237.46  Aligned_cols=264  Identities=18%  Similarity=0.272  Sum_probs=204.6

Q ss_pred             cEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEE-EEe-cCCeEEEEEecccccceeecceeccceeeeccc
Q 015490           88 AVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGII-CAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE  165 (406)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~-~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (406)
                      ...++.||..+      .+.++.||...|.+++|-|...+-+ +++ |+.+.+|.  ..            ..+.-.+++
T Consensus       128 fg~~F~~DSG~------SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffe--GP------------PFKFk~s~r  187 (603)
T KOG0318|consen  128 FGHVFLWDSGN------SVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFE--GP------------PFKFKSSFR  187 (603)
T ss_pred             eeEEEEecCCC------ccceeeccceeEeeeeccCCCceEEEeccCCCeEEEee--CC------------Ceeeeeccc
Confidence            34788888865      7789999999999999999988655 455 67766653  21            222223333


Q ss_pred             -ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeee---ccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCC
Q 015490          166 -NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNES---EAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASS  241 (406)
Q Consensus       166 -~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~  241 (406)
                       |+.-|+|+.|+|||.++++++.||+|.+||=.+++.+..+.   .|.+.|.+++|+||++.+++++.|.+++|||+.+.
T Consensus       188 ~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~  267 (603)
T KOG0318|consen  188 EHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTN  267 (603)
T ss_pred             ccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeecc
Confidence             44789999999999999999999999999999999998887   67789999999999999999999999999999877


Q ss_pred             eeeeeccc------------------------------------------CCcceEEEEEEEcCCCCceEEEEEEEcCCC
Q 015490          242 AVATPLAK------------------------------------------ENDELFASCRFSPLNNEDYVLYIAAITDRG  279 (406)
Q Consensus       242 ~~~~~~~~------------------------------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  279 (406)
                      ++++++..                                          .|...|+++..++++++      +.+++.|
T Consensus       268 slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~------i~SgsyD  341 (603)
T KOG0318|consen  268 SLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKT------IYSGSYD  341 (603)
T ss_pred             ceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCE------EEeeccC
Confidence            65544321                                          24556888888888864      3455666


Q ss_pred             cEEEEEeCCCceE-------------------------------------------------------------------
Q 015490          280 ASIVTWNTTTWKR-------------------------------------------------------------------  292 (406)
Q Consensus       280 ~~i~~~d~~~~~~-------------------------------------------------------------------  292 (406)
                      |.|.-||..++..                                                                   
T Consensus       342 G~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~av  421 (603)
T KOG0318|consen  342 GHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAV  421 (603)
T ss_pred             ceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEE
Confidence            6666666543111                                                                   


Q ss_pred             ----------------------------------------------------------EEEeeecCCCeEEEEEcCCCCE
Q 015490          293 ----------------------------------------------------------IRTKQVVREPVSSFNVSADGKL  314 (406)
Q Consensus       293 ----------------------------------------------------------~~~~~~~~~~i~~~~~sp~~~~  314 (406)
                                                                                ......|.++|+++++|||+.+
T Consensus       422 v~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~y  501 (603)
T KOG0318|consen  422 VACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAY  501 (603)
T ss_pred             EEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcE
Confidence                                                                      1112223447888888888888


Q ss_pred             EEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490          315 LAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       315 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      ||++...+.+.+||+.+.+.......-|...|.+++|+|+..++||||.|-.|.||+++.+.+
T Consensus       502 la~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~  564 (603)
T KOG0318|consen  502 LAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAK  564 (603)
T ss_pred             EEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhh
Confidence            888888888888888877664333335999999999999999999999999999999998765

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.2e-32  Score=236.33  Aligned_cols=261  Identities=19%  Similarity=0.271  Sum_probs=220.8

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-  167 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  167 (406)
                      .+..|+...     ..+.++..|.++|.++.|+.+|.+|++++ |++..+|+...              +...+.+..+ 
T Consensus       258 ~~riw~~~G-----~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~--------------g~~~q~f~~~s  318 (524)
T KOG0273|consen  258 EARIWNKDG-----NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT--------------GTVKQQFEFHS  318 (524)
T ss_pred             EEEEEecCc-----hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccC--------------ceEEEeeeecc
Confidence            344555554     46778999999999999999999999998 99888876542              2233333344 


Q ss_pred             CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeec
Q 015490          168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPL  247 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  247 (406)
                      .+-..+.|-.+ ..|++.+.|+.|+|+.+....++.++.+|+++|.++.|+|.+.+|+++|+|++++||..........+
T Consensus       319 ~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l  397 (524)
T KOG0273|consen  319 APALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDL  397 (524)
T ss_pred             CCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhh
Confidence            33367888654 46889999999999999988999999999999999999999999999999999999999998888888


Q ss_pred             ccCCcceEEEEEEEcCCCCce---EEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcE
Q 015490          248 AKENDELFASCRFSPLNNEDY---VLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDI  324 (406)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i  324 (406)
                      ..|.. .|..+.|+|.+....   .-..+++.+.|++|++||...+.++..+..|..+|++++|+|+|+++|+|+.||.|
T Consensus       398 ~~Hsk-ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V  476 (524)
T KOG0273|consen  398 QAHSK-EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCV  476 (524)
T ss_pred             hhhcc-ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCee
Confidence            87654 477899999875311   11245666789999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490          325 SIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       325 ~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~  373 (406)
                      .+|+.++++..+.+.  ..+.|..++|+.+|..|..+-.|+.+++-|++
T Consensus       477 ~iws~~~~~l~~s~~--~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  477 HIWSTKTGKLVKSYQ--GTGGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             EeccccchheeEeec--CCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            999999999999985  56779999999999999999999999999985

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.6e-33  Score=256.21  Aligned_cols=206  Identities=18%  Similarity=0.279  Sum_probs=189.3

Q ss_pred             ceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCCEE
Q 015490          105 PVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIF  182 (406)
Q Consensus       105 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l  182 (406)
                      ...++.||+++|+.+.|+|+.++|++++ |.++|+|.++..              .++..+.+| .+|.++.|+|-|-+|
T Consensus       443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~--------------s~~V~y~GH~~PVwdV~F~P~GyYF  508 (707)
T KOG0263|consen  443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW--------------SCLVIYKGHLAPVWDVQFAPRGYYF  508 (707)
T ss_pred             eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccc--------------eeEEEecCCCcceeeEEecCCceEE
Confidence            4556999999999999999999999998 899999998853              333334455 899999999999999


Q ss_pred             EEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEc
Q 015490          183 AAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSP  262 (406)
Q Consensus       183 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  262 (406)
                      |+++.|++-++|........+.+.+|...|.|+.|+|+..++++||.|.++++||+.+|..++.+.+ |..+|.+++|+|
T Consensus       509 atas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G-H~~~V~al~~Sp  587 (707)
T KOG0263|consen  509 ATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG-HKGPVTALAFSP  587 (707)
T ss_pred             EecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC-CCCceEEEEEcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999987 456799999999


Q ss_pred             CCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 015490          263 LNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSS  331 (406)
Q Consensus       263 ~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~  331 (406)
                      +|+      .+++++.++.|.+||+.+++.+..+.+|.+.|.++.||.+|..||+|+.|++|++||+..
T Consensus       588 ~Gr------~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  588 CGR------YLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             CCc------eEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence            998      478999999999999999999999999999999999999999999999999999999864

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.8e-32  Score=254.89  Aligned_cols=256  Identities=20%  Similarity=0.288  Sum_probs=215.7

Q ss_pred             eeEEecC-CCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeec-ccccCcEEEEEECCCCCEE
Q 015490          106 VAELRTD-SDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQ-LENVGQQLALTFDSEGTIF  182 (406)
Q Consensus       106 ~~~~~~h-~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l  182 (406)
                      ...+.+| ...|.++.|+|+|+.++++. ++.+++|.......            ...+. ..|...|.+++|+|+++++
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~------------~~~~~l~~h~~~v~~~~fs~d~~~l  218 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS------------NLLRELSGHTRGVSDVAFSPDGSYL  218 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc------------hhhccccccccceeeeEECCCCcEE
Confidence            4455444 78999999999999988886 89999988743221            12222 2355889999999999999


Q ss_pred             EEeeCCCeEEEEeC-CCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEE
Q 015490          183 AAGSENGNLRVFKW-PSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFS  261 (406)
Q Consensus       183 ~~~~~dg~i~vwd~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  261 (406)
                      ++++.|++|+|||+ ..+..+..+.+|...|++++|+|+++++++|+.|++|++||++++++...+..|.+ .+.+++|+
T Consensus       219 ~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~-~is~~~f~  297 (456)
T KOG0266|consen  219 LSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD-GISGLAFS  297 (456)
T ss_pred             EEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC-ceEEEEEC
Confidence            99999999999999 56688889999999999999999999999999999999999999999999987655 68899999


Q ss_pred             cCCCCceEEEEEEEcCCCcEEEEEeCCCce--EEEEeeecCCC--eEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEE
Q 015490          262 PLNNEDYVLYIAAITDRGASIVTWNTTTWK--RIRTKQVVREP--VSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTA  337 (406)
Q Consensus       262 ~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~--i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~  337 (406)
                      +++..      +++++.|+.|++||+.++.  +...+..+...  +++++|+|++.++++++.|+.+++||+..+.....
T Consensus       298 ~d~~~------l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~  371 (456)
T KOG0266|consen  298 PDGNL------LVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGT  371 (456)
T ss_pred             CCCCE------EEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceee
Confidence            99984      4555779999999999998  55666666544  99999999999999999999999999999999888


Q ss_pred             eecccccc---eEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490          338 VKKAHLGI---VTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       338 ~~~~~~~~---v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~  381 (406)
                      +. +|...   +.+...++.++++++|+.|+.|++|++.++..+..+
T Consensus       372 ~~-~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l  417 (456)
T KOG0266|consen  372 YT-GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRL  417 (456)
T ss_pred             ec-ccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhh
Confidence            86 67654   445566788999999999999999999987654433

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.9e-32  Score=254.76  Aligned_cols=249  Identities=22%  Similarity=0.352  Sum_probs=217.6

Q ss_pred             ceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCCEE
Q 015490          105 PVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIF  182 (406)
Q Consensus       105 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l  182 (406)
                      ....+.+|...|.+++|+|+++++++++ |.+++||+.. .            ....++.+.+| ..|++++|+|+|+++
T Consensus       195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~-~------------~~~~~~~l~gH~~~v~~~~f~p~g~~i  261 (456)
T KOG0266|consen  195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK-D------------DGRNLKTLKGHSTYVTSVAFSPDGNLL  261 (456)
T ss_pred             hhccccccccceeeeEECCCCcEEEEecCCceEEEeecc-C------------CCeEEEEecCCCCceEEEEecCCCCEE
Confidence            5566699999999999999999999987 8888888772 2            33444555444 889999999999999


Q ss_pred             EEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCe--eeeecccCCcc-eEEEEE
Q 015490          183 AAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSA--VATPLAKENDE-LFASCR  259 (406)
Q Consensus       183 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~~~~~-~~~~~~  259 (406)
                      ++|+.|++|+|||++++++...+..|.+.|++++|++++++|++++.|+.|++||+.++.  +...+...... .++++.
T Consensus       262 ~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  341 (456)
T KOG0266|consen  262 VSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQ  341 (456)
T ss_pred             EEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEE
Confidence            999999999999999999999999999999999999999999999999999999999998  55666665555 789999


Q ss_pred             EEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCC---eEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEE
Q 015490          260 FSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREP---VSSFNVSADGKLLAVGTASGDISIIDSSSLQVRT  336 (406)
Q Consensus       260 ~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~---i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~  336 (406)
                      |+|++.+      +.++..|+.+++||+..++....+..|...   +.+...++.+.++++|+.|+.|.+||+.++..+.
T Consensus       342 fsp~~~~------ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~  415 (456)
T KOG0266|consen  342 FSPNGKY------LLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQ  415 (456)
T ss_pred             ECCCCcE------EEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhh
Confidence            9999984      455678999999999999999999888764   4455567899999999999999999999988888


Q ss_pred             Eeeccc-ccceEEEEEcCCCCeEEEEE--CCCcEEEEEec
Q 015490          337 AVKKAH-LGIVTALAFSYDSRALVSAS--MDSSVRVTVIE  373 (406)
Q Consensus       337 ~~~~~~-~~~v~~~~~sp~~~~l~s~s--~dg~i~iw~~~  373 (406)
                      .+. +| ...+..+.++|...++++++  .|+.+++|..+
T Consensus       416 ~l~-~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  416 RLE-GHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             hhc-CCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            886 89 88899999999999999988  78999999764

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.8e-32  Score=244.94  Aligned_cols=282  Identities=16%  Similarity=0.253  Sum_probs=233.5

Q ss_pred             CCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEeccc
Q 015490           67 RRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVE  145 (406)
Q Consensus        67 ~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~  145 (406)
                      ..+.+++++++.-       ..+.+|.|..+.      .+...++|...+++++++|||+++++|+ |+.++||+..   
T Consensus       317 ~tGDWiA~g~~kl-------gQLlVweWqsEs------YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~---  380 (893)
T KOG0291|consen  317 STGDWIAFGCSKL-------GQLLVWEWQSES------YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ---  380 (893)
T ss_pred             ccCCEEEEcCCcc-------ceEEEEEeeccc------eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEecc---
Confidence            3677887765432       256778887765      7778899999999999999999999998 9999997754   


Q ss_pred             ccceeecceeccceeeecccc-cCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCC-ceeEEEEccCCCE
Q 015490          146 NTEIRRLGVKISEKVLSQLEN-VGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHA-SVKDLSFSPDGKF  223 (406)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~  223 (406)
                                 ..-++.++.. ...|+.+.|+..|+.+++.+-||+|+.||+...+..+++..... ...|++..|.|..
T Consensus       381 -----------SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGel  449 (893)
T KOG0291|consen  381 -----------SGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGEL  449 (893)
T ss_pred             -----------CceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCE
Confidence                       3445555554 48899999999999999999999999999999988888876655 7789999999998


Q ss_pred             EEEEeCCC-CEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc-eEEEEeeecCC
Q 015490          224 LVSLGNRG-PGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW-KRIRTKQVVRE  301 (406)
Q Consensus       224 l~s~s~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~  301 (406)
                      ++.|+.|. .|.+|++++|+.+-.+.+| ..+|.+++|+|.+.      .+++++.|.+|++||+-.. ..+.++. +..
T Consensus       450 V~AG~~d~F~IfvWS~qTGqllDiLsGH-EgPVs~l~f~~~~~------~LaS~SWDkTVRiW~if~s~~~vEtl~-i~s  521 (893)
T KOG0291|consen  450 VCAGAQDSFEIFVWSVQTGQLLDILSGH-EGPVSGLSFSPDGS------LLASGSWDKTVRIWDIFSSSGTVETLE-IRS  521 (893)
T ss_pred             EEeeccceEEEEEEEeecCeeeehhcCC-CCcceeeEEccccC------eEEeccccceEEEEEeeccCceeeeEe-ecc
Confidence            88888775 5999999999999988876 45788999999998      5789999999999998654 3455554 446


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEee-------------------cccccceEEEEEcCCCCeEEEEE
Q 015490          302 PVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVK-------------------KAHLGIVTALAFSYDSRALVSAS  362 (406)
Q Consensus       302 ~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------------------~~~~~~v~~~~~sp~~~~l~s~s  362 (406)
                      .+..++|+|+|+.|++++.||.|.+||...+.....+.                   .......+.+++|+||.++++|+
T Consensus       522 dvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG  601 (893)
T KOG0291|consen  522 DVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGG  601 (893)
T ss_pred             ceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecC
Confidence            78999999999999999999999999998765553332                   11235688999999999999999


Q ss_pred             CCCcEEEEEecCCcCCCCchH
Q 015490          363 MDSSVRVTVIEDKKKSGGLNL  383 (406)
Q Consensus       363 ~dg~i~iw~~~~~~~~~~~~~  383 (406)
                      ..+.|++|++.++-.+..|++
T Consensus       602 ~sn~iCiY~v~~~vllkkfqi  622 (893)
T KOG0291|consen  602 ESNSICIYDVPEGVLLKKFQI  622 (893)
T ss_pred             CcccEEEEECchhheeeeEEe
Confidence            999999999999888776654

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.6e-33  Score=238.02  Aligned_cols=257  Identities=15%  Similarity=0.152  Sum_probs=200.1

Q ss_pred             CccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECC
Q 015490          100 SLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDS  177 (406)
Q Consensus       100 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~  177 (406)
                      .++.+..+.+..|++.|.-+.||++|++||+++ |.+..||.......           -+...++. |..+|..+.|||
T Consensus       211 qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~-----------~kl~~tlvgh~~~V~yi~wSP  279 (519)
T KOG0293|consen  211 QIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH-----------FKLKKTLVGHSQPVSYIMWSP  279 (519)
T ss_pred             cCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc-----------eeeeeeeecccCceEEEEECC
Confidence            445567778999999999999999999999998 88888888765432           12233333 558999999999


Q ss_pred             CCCEEEEeeCCCeEEEEeCCCcceEeeeeccCC-ceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcc---
Q 015490          178 EGTIFAAGSENGNLRVFKWPSLEIILNESEAHA-SVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDE---  253 (406)
Q Consensus       178 ~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~---  253 (406)
                      |.++|++++.+..+++||+.+|.....+....+ .+.+++|.|||..+++|+.|+++..||+.. .......+-...   
T Consensus       280 DdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v~  358 (519)
T KOG0293|consen  280 DDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNWEGVRDPKVH  358 (519)
T ss_pred             CCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhcccccccceeE
Confidence            999999999999999999999998877765534 899999999999999999999999999853 222222222223   


Q ss_pred             --------------------------------------eEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEE
Q 015490          254 --------------------------------------LFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRT  295 (406)
Q Consensus       254 --------------------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~  295 (406)
                                                            ++++...+.+++.      +...-.+..+++||+...+.++.
T Consensus       359 dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~------~LvnL~~qei~LWDl~e~~lv~k  432 (519)
T KOG0293|consen  359 DLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKL------ALVNLQDQEIHLWDLEENKLVRK  432 (519)
T ss_pred             EEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcE------EEEEcccCeeEEeecchhhHHHH
Confidence                                                  3444455555442      22223466788888887777777


Q ss_pred             eeecCC--CeEEEEEcC-CCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCC-CCeEEEEECCCcEEEEE
Q 015490          296 KQVVRE--PVSSFNVSA-DGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYD-SRALVSASMDSSVRVTV  371 (406)
Q Consensus       296 ~~~~~~--~i~~~~~sp-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~s~s~dg~i~iw~  371 (406)
                      +.+|..  .+-.-||-- +..++++|++|+.|+||+..+++++..+. +|...|++++|+|. ..++|++|.||+||||.
T Consensus       433 Y~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~Ls-GHs~~vNcVswNP~~p~m~ASasDDgtIRIWg  511 (519)
T KOG0293|consen  433 YFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLS-GHSKTVNCVSWNPADPEMFASASDDGTIRIWG  511 (519)
T ss_pred             hhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeec-CCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence            777753  333445544 55899999999999999999999999996 99999999999995 56789999999999999


Q ss_pred             ecCC
Q 015490          372 IEDK  375 (406)
Q Consensus       372 ~~~~  375 (406)
                      ....
T Consensus       512 ~~~~  515 (519)
T KOG0293|consen  512 PSDN  515 (519)
T ss_pred             CCcc
Confidence            8755

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=3e-31  Score=233.86  Aligned_cols=268  Identities=22%  Similarity=0.347  Sum_probs=219.9

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVEN  146 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~  146 (406)
                      .++.+++++..|        .+.++.++..      +....+..|...+..+.|+|+++.+++++ ++.+.+|+++..  
T Consensus        20 ~~~~l~~~~~~g--------~i~i~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~--   83 (289)
T cd00200          20 DGKLLATGSGDG--------TIKVWDLETG------ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG--   83 (289)
T ss_pred             CCCEEEEeecCc--------EEEEEEeeCC------CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc--
Confidence            456666654322        3445544432      26677889999999999999998888887 888888776532  


Q ss_pred             cceeecceeccceeeeccc-ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEE
Q 015490          147 TEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLV  225 (406)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  225 (406)
                      +.            ...+. +...+.++.|+++++++++++.++.|++||+++++....+..|...|.+++|+|++.+++
T Consensus        84 ~~------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  151 (289)
T cd00200          84 EC------------VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVA  151 (289)
T ss_pred             cc------------eEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEE
Confidence            11            11222 345899999999999999988899999999998888888877777999999999998888


Q ss_pred             EEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEE
Q 015490          226 SLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSS  305 (406)
Q Consensus       226 s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~  305 (406)
                      +++.++.+++||+++++....+..+ ...+.++.|+|+++.      ++.++.++.|++||+++++.+..+..+...+.+
T Consensus       152 ~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~------l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~  224 (289)
T cd00200         152 SSSQDGTIKLWDLRTGKCVATLTGH-TGEVNSVAFSPDGEK------LLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS  224 (289)
T ss_pred             EEcCCCcEEEEEccccccceeEecC-ccccceEEECCCcCE------EEEecCCCcEEEEECCCCceecchhhcCCceEE
Confidence            8888999999999988877777643 446889999999974      233345999999999998888888788889999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEE
Q 015490          306 FNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTV  371 (406)
Q Consensus       306 ~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~  371 (406)
                      ++|+|++.++++++.+|.|++||+.+++....+. .|...|.+++|+|++++|++++.|+.|++|+
T Consensus       225 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         225 VAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS-GHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             EEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc-ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            9999999899888889999999999988888886 8889999999999999999999999999996

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=3.2e-33  Score=232.14  Aligned_cols=250  Identities=14%  Similarity=0.196  Sum_probs=224.8

Q ss_pred             cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCCE
Q 015490          104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTI  181 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~  181 (406)
                      +..+.+.+|.++|.|+++.|.+.++++|+ |++++||++.              +++...++.++ ..|..+++|+-..|
T Consensus       142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDla--------------tg~LkltltGhi~~vr~vavS~rHpY  207 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLA--------------TGQLKLTLTGHIETVRGVAVSKRHPY  207 (460)
T ss_pred             eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcc--------------cCeEEEeecchhheeeeeeecccCce
Confidence            44567889999999999999999999997 9999998876              44455556655 78999999999999


Q ss_pred             EEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEE
Q 015490          182 FAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFS  261 (406)
Q Consensus       182 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  261 (406)
                      +++++.|+.|+.||++..+.++.+.+|-..|.+++.+|.-..|++++.|.++++||+++...+..+.+| ...|..+.+.
T Consensus       208 lFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH-~~~V~~V~~~  286 (460)
T KOG0285|consen  208 LFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGH-TNPVASVMCQ  286 (460)
T ss_pred             EEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCC-CCcceeEEee
Confidence            999999999999999999999999999999999999999999999999999999999999999999876 4567889898


Q ss_pred             cCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecc
Q 015490          262 PLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKA  341 (406)
Q Consensus       262 ~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  341 (406)
                      |....      +.+++.|++|++||++.++...++..|...+.+++.+|....+|+++.|. |+-|++..+..+..+. +
T Consensus       287 ~~dpq------vit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nls-g  358 (460)
T KOG0285|consen  287 PTDPQ------VITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLS-G  358 (460)
T ss_pred             cCCCc------eEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccc-c
Confidence            87775      56788999999999999999999999999999999999999999988775 9999999999988875 9


Q ss_pred             cccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490          342 HLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       342 ~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      |+..|++++...|| ++++|+.+|.+.+||.+++-.
T Consensus       359 h~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~n  393 (460)
T KOG0285|consen  359 HNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHN  393 (460)
T ss_pred             ccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcc
Confidence            99999999998776 688999999999999998765

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=2.1e-32  Score=257.27  Aligned_cols=326  Identities=15%  Similarity=0.210  Sum_probs=248.5

Q ss_pred             CCccceeeCCeeeeeecccccccccccCCCCCCCCCCchhhhccCCCcccccccccCCCCCcEEEEEcCCCCCCCCcCcc
Q 015490            9 ESHNLQKYGVPLYGAGWVPYDQVIRSTHKPPKQQDDDDKEEDQHGSKDEAVADKSDDIRRNYYVVLAGGGGAGNSGIRNA   88 (406)
Q Consensus         9 ~~~~~~~~~~p~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ggg~~~~g~~~~   88 (406)
                      .|+++.+.+.+||+++-.|                                        +...++++|.+.++..++.+.
T Consensus         5 kp~wv~H~~~~IfSIdv~p----------------------------------------dg~~~aTgGq~~d~~~~iW~~   44 (942)
T KOG0973|consen    5 KPTWVNHNEKSIFSIDVHP----------------------------------------DGVKFATGGQVLDGGIVIWSQ   44 (942)
T ss_pred             cccccccCCeeEEEEEecC----------------------------------------CceeEecCCccccccceeecc
Confidence            5889999999999999995                                        333333333223333333333


Q ss_pred             EEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceee----cceeccceeeec
Q 015490           89 VLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRR----LGVKISEKVLSQ  163 (406)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~  163 (406)
                      -.+..-..+.+...+..+.+...|.+.|.|+.|+|||++||+|+ |+.+.||............    ......-+....
T Consensus        45 ~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~  124 (942)
T KOG0973|consen   45 DPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSI  124 (942)
T ss_pred             ccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEE
Confidence            33332222222224678889999999999999999999999999 6667777766311110000    000012334444


Q ss_pred             cccc-CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCe
Q 015490          164 LENV-GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSA  242 (406)
Q Consensus       164 ~~~~-~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~  242 (406)
                      +.+| ..|..++|+|++.+|++++.|++|.||+..+.+.+..+.+|++.|..+.|.|-|++|++-+.|++|++|+..+-.
T Consensus       125 l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~  204 (942)
T KOG0973|consen  125 LRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWG  204 (942)
T ss_pred             EecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccce
Confidence            5555 889999999999999999999999999999999999999999999999999999999999999999999987766


Q ss_pred             eeeecccCC-----cceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcC-----CC
Q 015490          243 VATPLAKEN-----DELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSA-----DG  312 (406)
Q Consensus       243 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp-----~~  312 (406)
                      ..+.+..+.     ...+..+.|+|+|.+  +....+..+....+.+.+..+++.-..+.+|..++.++.|+|     ..
T Consensus       205 i~k~It~pf~~~~~~T~f~RlSWSPDG~~--las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~  282 (942)
T KOG0973|consen  205 IEKSITKPFEESPLTTFFLRLSWSPDGHH--LASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNN  282 (942)
T ss_pred             eeEeeccchhhCCCcceeeecccCCCcCe--ecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhcccc
Confidence            666554432     345788999999996  222233345566899999999999999999999999999998     11


Q ss_pred             C------------EEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490          313 K------------LLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       313 ~------------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~  376 (406)
                      +            .+|+|+.|++|.||.....+++.....-....|..++|+|||..|+.+|.||+|.+..++..+
T Consensus       283 ~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  283 KNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             ccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence            2            678999999999999988888877765567789999999999999999999999999998644

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=2e-33  Score=242.03  Aligned_cols=259  Identities=14%  Similarity=0.212  Sum_probs=219.2

Q ss_pred             ccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc
Q 015490           87 NAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE  165 (406)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (406)
                      ..+.++.+-.+     ...++++.+|..+|..++|+++|..+++++ |..+++|+.+              ++++...+.
T Consensus       237 ~~vklW~vy~~-----~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtE--------------TG~~~~~f~  297 (503)
T KOG0282|consen  237 GLVKLWNVYDD-----RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTE--------------TGQVLSRFH  297 (503)
T ss_pred             ceEEEEEEecC-----cceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccc--------------cceEEEEEe
Confidence            34555554443     268999999999999999999999999887 9999997765              455555666


Q ss_pred             ccCcEEEEEECCCC-CEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeee
Q 015490          166 NVGQQLALTFDSEG-TIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVA  244 (406)
Q Consensus       166 ~~~~v~~~~~s~~g-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~  244 (406)
                      ....++|+.|.||+ +.|++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++|++++++++|++++||+.+.+..+
T Consensus       298 ~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~i  377 (503)
T KOG0282|consen  298 LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPI  377 (503)
T ss_pred             cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccc
Confidence            66788999999998 89999999999999999999999888888889999999999999999999999999999988877


Q ss_pred             eecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc---eEEEEeeecC--CCeEEEEEcCCCCEEEEEe
Q 015490          245 TPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW---KRIRTKQVVR--EPVSSFNVSADGKLLAVGT  319 (406)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~---~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~  319 (406)
                      ..+.........++..+|+++      +.+.-+.+..|.++.+...   ...+.+.+|.  +.-..+.|||||++|++|+
T Consensus       378 k~i~~~~~hsmP~~~~~P~~~------~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGd  451 (503)
T KOG0282|consen  378 KNIADPEMHTMPCLTLHPNGK------WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGD  451 (503)
T ss_pred             hhhcchhhccCcceecCCCCC------eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeec
Confidence            766655555677899999998      3556678899999986532   2234455663  5567899999999999999


Q ss_pred             CCCcEEEEECCCceEEEEeecccccceEEEEEcCC-CCeEEEEECCCcEEEEE
Q 015490          320 ASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYD-SRALVSASMDSSVRVTV  371 (406)
Q Consensus       320 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~s~s~dg~i~iw~  371 (406)
                      .||.+.+||.++.+.+..+. .|.+++..+.|+|. ...+|||+.||.|++|+
T Consensus       452 sdG~v~~wdwkt~kl~~~lk-ah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  452 SDGKVNFWDWKTTKLVSKLK-AHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             CCccEEEeechhhhhhhccc-cCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            99999999999999999996 89999999999996 46789999999999996

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.7e-32  Score=245.24  Aligned_cols=285  Identities=15%  Similarity=0.183  Sum_probs=235.6

Q ss_pred             ccccccccCCCCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCC
Q 015490           57 EAVADKSDDIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNS  135 (406)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~  135 (406)
                      +.+....+-.+.+++++++...+        .+.++  +..+     .....+.||++.|.+++...+|.+|++++ |++
T Consensus       324 dEI~Dm~~lG~e~~~laVATNs~--------~lr~y--~~~~-----~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~s  388 (775)
T KOG0319|consen  324 DEILDMKFLGPEESHLAVATNSP--------ELRLY--TLPT-----SYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKS  388 (775)
T ss_pred             hhheeeeecCCccceEEEEeCCC--------ceEEE--ecCC-----CceEEEeCchhheeeeeecccCcEEEEecCCce
Confidence            45666677777888888875433        23444  3333     23347899999999999777888888888 999


Q ss_pred             eEEEEEecccccceeecceeccceeeecc-cccCcEEEEEECCCC-CEEEEeeCCCeEEEEeCCCcce-----E----ee
Q 015490          136 CRLFEWDEVENTEIRRLGVKISEKVLSQL-ENVGQQLALTFDSEG-TIFAAGSENGNLRVFKWPSLEI-----I----LN  204 (406)
Q Consensus       136 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g-~~l~~~~~dg~i~vwd~~~~~~-----~----~~  204 (406)
                      +++|.++.....          ..++... .|...|.+++++..+ .+|++++.|+++++|++...+.     .    ..
T Consensus       389 vilWr~~~~~~~----------~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t  458 (775)
T KOG0319|consen  389 VILWRLNNNCSK----------SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYT  458 (775)
T ss_pred             EEEEEecCCcch----------hhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHH
Confidence            999998433221          1122222 345889999998766 7899999999999999975221     1    12


Q ss_pred             eeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEE
Q 015490          205 ESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVT  284 (406)
Q Consensus       205 ~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~  284 (406)
                      ...|...|++++.+|+.+++++||.|++.+||+++..+....+.+|. ..+.++.|+|..+      ++++++.|++|++
T Consensus       459 ~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~-RGvw~V~Fs~~dq------~laT~SgD~TvKI  531 (775)
T KOG0319|consen  459 ERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHT-RGVWCVSFSKNDQ------LLATCSGDKTVKI  531 (775)
T ss_pred             HHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCc-cceEEEEeccccc------eeEeccCCceEEE
Confidence            23566799999999999999999999999999999988889988765 4588999999987      5788899999999


Q ss_pred             EeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECC
Q 015490          285 WNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMD  364 (406)
Q Consensus       285 ~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d  364 (406)
                      |.+.+..+++++.+|...|..+.|-.+|+.|++++.||-+++|+++++.++.++. .|+..|++++.+|.+.+++||+.|
T Consensus       532 W~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD-~H~DrvWaL~~~~~~~~~~tgg~D  610 (775)
T KOG0319|consen  532 WSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD-AHNDRVWALSVSPLLDMFVTGGGD  610 (775)
T ss_pred             EEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh-hccceeEEEeecCccceeEecCCC
Confidence            9999999999999999999999999999999999999999999999999999997 999999999999999999999999


Q ss_pred             CcEEEEEecC
Q 015490          365 SSVRVTVIED  374 (406)
Q Consensus       365 g~i~iw~~~~  374 (406)
                      |.|.+|.=.+
T Consensus       611 g~i~~wkD~T  620 (775)
T KOG0319|consen  611 GRIIFWKDVT  620 (775)
T ss_pred             eEEEEeecCc
Confidence            9999996443

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=4.6e-33  Score=220.63  Aligned_cols=251  Identities=16%  Similarity=0.235  Sum_probs=217.0

Q ss_pred             cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEE
Q 015490          104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIF  182 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  182 (406)
                      .-+.++.+|.+.|.+...+.+....++++ |-+.++|+  ..            +...+..+.|..-|..++|+.|.++|
T Consensus        50 dwigtfeghkgavw~~~l~~na~~aasaaadftakvw~--a~------------tgdelhsf~hkhivk~~af~~ds~~l  115 (334)
T KOG0278|consen   50 DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD--AV------------TGDELHSFEHKHIVKAVAFSQDSNYL  115 (334)
T ss_pred             CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh--hh------------hhhhhhhhhhhheeeeEEecccchhh
Confidence            46789999999999999998877766665 77778865  33            33445556777889999999999999


Q ss_pred             EEeeCCCeEEEEeCCCcc-eEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEE
Q 015490          183 AAGSENGNLRVFKWPSLE-IILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFS  261 (406)
Q Consensus       183 ~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  261 (406)
                      ++|+.+..++|||++..+ ....+.+|.+.|..+.|....+.|+++++|++||+||.+++..++.+...  ..++++.++
T Consensus       116 ltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~--s~VtSlEvs  193 (334)
T KOG0278|consen  116 LTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN--SPVTSLEVS  193 (334)
T ss_pred             hccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecC--CCCcceeec
Confidence            999999999999997655 45567788889999999998899999999999999999999999988754  458899999


Q ss_pred             cCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecc
Q 015490          262 PLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKA  341 (406)
Q Consensus       262 ~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  341 (406)
                      ++++.     ++  ....+.|.+||..+...++.+... ..|.+.+++|+...+++|++|..++.||..++..+..+..+
T Consensus       194 ~dG~i-----lT--ia~gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkg  265 (334)
T KOG0278|consen  194 QDGRI-----LT--IAYGSSVKFWDAKSFGLLKSYKMP-CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKG  265 (334)
T ss_pred             cCCCE-----EE--EecCceeEEeccccccceeeccCc-cccccccccCCCceEEecCcceEEEEEeccCCceeeecccC
Confidence            99984     22  235678999999999999888765 56899999999999999999999999999999999887569


Q ss_pred             cccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCC
Q 015490          342 HLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKS  378 (406)
Q Consensus       342 ~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~  378 (406)
                      |.++|.++.|+|||...++||.||+|++|.+..++.-
T Consensus       266 h~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  266 HFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             CCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence            9999999999999999999999999999999877653

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3.1e-32  Score=221.37  Aligned_cols=257  Identities=14%  Similarity=0.179  Sum_probs=214.3

Q ss_pred             ccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecc-cccCcEEEEEECCCCC
Q 015490          103 DQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQL-ENVGQQLALTFDSEGT  180 (406)
Q Consensus       103 ~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~  180 (406)
                      ..++..+.+|++.|+.+.|+|+|.++++|+ |..+.+|+.....             +....+ .|.+.|..+.|.+|+.
T Consensus        37 ~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc-------------eN~~~lkgHsgAVM~l~~~~d~s  103 (338)
T KOG0265|consen   37 QAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC-------------ENFWVLKGHSGAVMELHGMRDGS  103 (338)
T ss_pred             cchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc-------------cceeeeccccceeEeeeeccCCC
Confidence            357788999999999999999999999998 8888887754321             111122 3558999999999999


Q ss_pred             EEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCC-EEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEE
Q 015490          181 IFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGK-FLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCR  259 (406)
Q Consensus       181 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  259 (406)
                      .+++++.|.+++.||+++|+...+...|...|+.+.-+.-|. ++.+++.|+++++||+++...++.+..  ...++++.
T Consensus       104 ~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~--kyqltAv~  181 (338)
T KOG0265|consen  104 HILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN--KYQLTAVG  181 (338)
T ss_pred             EEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc--ceeEEEEE
Confidence            999999999999999999999999999999999888554444 677888999999999999888887753  34588999


Q ss_pred             EEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCc----eEE
Q 015490          260 FSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSL----QVR  335 (406)
Q Consensus       260 ~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~----~~~  335 (406)
                      |...+.+      +.+++-|+.|++||++.......+.+|..+|+.+..+|+|.++.+-+.|.++++||++..    +++
T Consensus       182 f~d~s~q------v~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v  255 (338)
T KOG0265|consen  182 FKDTSDQ------VISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCV  255 (338)
T ss_pred             ecccccc------eeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceE
Confidence            9998886      556788999999999999999999999999999999999999999999999999999753    334


Q ss_pred             EEeeccc--ccc--eEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490          336 TAVKKAH--LGI--VTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       336 ~~~~~~~--~~~--v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~  381 (406)
                      ..+. +|  .-.  ...++|+|+++.+.+|+.|..+++||......+-.+
T Consensus       256 ~if~-g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl  304 (338)
T KOG0265|consen  256 KIFQ-GHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL  304 (338)
T ss_pred             EEee-cchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEc
Confidence            4443 43  222  457899999999999999999999999876554443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-32  Score=244.42  Aligned_cols=255  Identities=16%  Similarity=0.246  Sum_probs=225.0

Q ss_pred             eEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccc-cCcEEEEEECCCCCEEEE
Q 015490          107 AELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLEN-VGQQLALTFDSEGTIFAA  184 (406)
Q Consensus       107 ~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~  184 (406)
                      +++..|++.|-++.|+|...+++++- .|++.||+++.++              .++.++- .-+|+++.|-+..+++++
T Consensus         7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqt--------------mVksfeV~~~PvRa~kfiaRknWiv~   72 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQT--------------MVKSFEVSEVPVRAAKFIARKNWIVT   72 (794)
T ss_pred             hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccce--------------eeeeeeecccchhhheeeeccceEEE
Confidence            34556899999999999999999886 9999999888543              2223333 367889999999999999


Q ss_pred             eeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeee-eecccCCcceEEEEEEEcC
Q 015490          185 GSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVA-TPLAKENDELFASCRFSPL  263 (406)
Q Consensus       185 ~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~  263 (406)
                      |+.|..|+||+.++++.+..+..|.+-|++++.+|...+++++|+|-+|++||.+..-.. +.+. .|...+.+++|+|.
T Consensus        73 GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfe-GH~HyVMqv~fnPk  151 (794)
T KOG0276|consen   73 GSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFE-GHEHYVMQVAFNPK  151 (794)
T ss_pred             ecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEc-CcceEEEEEEecCC
Confidence            999999999999999999999999999999999999999999999999999999876544 4555 45678999999999


Q ss_pred             CCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCceEEEEeecc
Q 015490          264 NNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADG--KLLAVGTASGDISIIDSSSLQVRTAVKKA  341 (406)
Q Consensus       264 ~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  341 (406)
                      ...     ..++++-|++|++|.+.+..+..++.+|...|.|+++-+.|  .+|++|+.|.+++|||.++..++.++. +
T Consensus       152 D~n-----tFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLe-G  225 (794)
T KOG0276|consen  152 DPN-----TFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLE-G  225 (794)
T ss_pred             Ccc-----ceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhh-c
Confidence            886     67888999999999999999999999999999999998844  699999999999999999999999996 9


Q ss_pred             cccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCch
Q 015490          342 HLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLN  382 (406)
Q Consensus       342 ~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~  382 (406)
                      |...|..+.|+|.-..++|||.||+++||+-.+-+....++
T Consensus       226 Ht~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn  266 (794)
T KOG0276|consen  226 HTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLN  266 (794)
T ss_pred             ccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhh
Confidence            99999999999999999999999999999998876654443

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.6e-32  Score=214.58  Aligned_cols=255  Identities=13%  Similarity=0.148  Sum_probs=216.3

Q ss_pred             ccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCC
Q 015490          103 DQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGT  180 (406)
Q Consensus       103 ~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~  180 (406)
                      ...+..+..|+++|.++.|+-||++.++++ |.++++|+.-              ...+++++.+| ..|..++.+.|..
T Consensus         7 tkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~--------------rg~liktYsghG~EVlD~~~s~Dns   72 (307)
T KOG0316|consen    7 TKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPL--------------RGALIKTYSGHGHEVLDAALSSDNS   72 (307)
T ss_pred             chhceeecccccceEEEEEccCCCEEEEcCCCceEEeeccc--------------ccceeeeecCCCceeeecccccccc
Confidence            346678899999999999999999988876 9999997643              44556666666 6799999999999


Q ss_pred             EEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCC--eeeeecccCCcceEEEE
Q 015490          181 IFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASS--AVATPLAKENDELFASC  258 (406)
Q Consensus       181 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~  258 (406)
                      .|++|+.|..+.+||+++|+..+.+.+|...|+.+.|+.+...+++|+-|.++++||.++.  ++++.+... ...+.++
T Consensus        73 kf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea-~D~V~Si  151 (307)
T KOG0316|consen   73 KFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEA-KDGVSSI  151 (307)
T ss_pred             ccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhh-cCceeEE
Confidence            9999999999999999999999999999999999999999999999999999999999864  455555433 3346677


Q ss_pred             EEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEe
Q 015490          259 RFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAV  338 (406)
Q Consensus       259 ~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~  338 (406)
                      ..+..        .+..++-||+++.||++.++.....-+  .+|++++|++|+++.+.++.|+++++.|-.+++.+..+
T Consensus       152 ~v~~h--------eIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sY  221 (307)
T KOG0316|consen  152 DVAEH--------EIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSY  221 (307)
T ss_pred             Eeccc--------EEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHh
Confidence            66543        356778899999999999987766554  57999999999999999999999999999999999998


Q ss_pred             ecccccceE--EEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCchH
Q 015490          339 KKAHLGIVT--ALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLNL  383 (406)
Q Consensus       339 ~~~~~~~v~--~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~  383 (406)
                      + +|...-.  .++++....++++||.||.|++||+.+.+.+.+++.
T Consensus       222 k-Ghkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~  267 (307)
T KOG0316|consen  222 K-GHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSV  267 (307)
T ss_pred             c-ccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeecc
Confidence            6 8876543  556777778999999999999999999888776654

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=4.5e-31  Score=209.26  Aligned_cols=238  Identities=17%  Similarity=0.247  Sum_probs=201.2

Q ss_pred             cEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccc
Q 015490           88 AVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLEN  166 (406)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (406)
                      .+.++.++...    +.|+.++.+|++.|+++.|..+|+++++|+ |++++||++..              ..+.+.+++
T Consensus        62 hvRlyD~~S~n----p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~--------------~~~qR~~~~  123 (311)
T KOG0315|consen   62 HVRLYDLNSNN----PNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS--------------LSCQRNYQH  123 (311)
T ss_pred             eeEEEEccCCC----CCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccC--------------cccchhccC
Confidence            44555555443    469999999999999999999999999999 99999998773              344556677


Q ss_pred             cCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCC-ceeEEEEccCCCEEEEEeCCCCEEEEEcCCCe---
Q 015490          167 VGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHA-SVKDLSFSPDGKFLVSLGNRGPGRVWDLASSA---  242 (406)
Q Consensus       167 ~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~---  242 (406)
                      ..+|+++..+|+...|++|..+|.|++||+.+..+...+..... .|.+++..|||++++.+...|+.++|++-...   
T Consensus       124 ~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s  203 (311)
T KOG0315|consen  124 NSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTAS  203 (311)
T ss_pred             CCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccc
Confidence            89999999999999999999999999999988877666555444 89999999999999999999999999987643   


Q ss_pred             ---eeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc-eEEEEeeecCCCeEEEEEcCCCCEEEEE
Q 015490          243 ---VATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW-KRIRTKQVVREPVSSFNVSADGKLLAVG  318 (406)
Q Consensus       243 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~  318 (406)
                         ++.+++.+ ...+..+.++|++++      +++++.|.++++|+..+. +....+++|...+...+||.||+||++|
T Consensus       204 ~l~P~~k~~ah-~~~il~C~lSPd~k~------lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTa  276 (311)
T KOG0315|consen  204 ELEPVHKFQAH-NGHILRCLLSPDVKY------LATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTA  276 (311)
T ss_pred             cceEhhheecc-cceEEEEEECCCCcE------EEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEec
Confidence               33444444 445778999999994      677788999999999987 6677788899999999999999999999


Q ss_pred             eCCCcEEEEECCCceEEEEeecccccceEEEEE
Q 015490          319 TASGDISIIDSSSLQVRTAVKKAHLGIVTALAF  351 (406)
Q Consensus       319 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~  351 (406)
                      +.|+.+++||+..++.++... +|.....+++.
T Consensus       277 ssd~~~rlW~~~~~k~v~qy~-gh~K~~vc~~l  308 (311)
T KOG0315|consen  277 SSDHTARLWDLSAGKEVRQYQ-GHHKAAVCVAL  308 (311)
T ss_pred             CCCCceeecccccCceeeecC-CcccccEEEEe
Confidence            999999999999999999986 77777666664

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=4.4e-31  Score=232.80  Aligned_cols=254  Identities=24%  Similarity=0.342  Sum_probs=215.7

Q ss_pred             eeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecc-cccCcEEEEEECCCCCEEE
Q 015490          106 VAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQL-ENVGQQLALTFDSEGTIFA  183 (406)
Q Consensus       106 ~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~  183 (406)
                      +.++.+|.++|.+++|+|+++++++++ ++.+.+|+++...              ....+ .+...+..+.|++++++++
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~--------------~~~~~~~~~~~i~~~~~~~~~~~l~   67 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE--------------LLRTLKGHTGPVRDVAASADGTYLA   67 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC--------------cEEEEecCCcceeEEEECCCCCEEE
Confidence            345779999999999999999999987 8888888776421              11112 2446778999999999999


Q ss_pred             EeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcC
Q 015490          184 AGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPL  263 (406)
Q Consensus       184 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (406)
                      +++.+|.|++|++.+++....+..+...+.++.|+++++++++++.++.+++||+++++....+.. +...+.++.|+|+
T Consensus        68 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~  146 (289)
T cd00200          68 SGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG-HTDWVNSVAFSPD  146 (289)
T ss_pred             EEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEecc-CCCcEEEEEEcCc
Confidence            999999999999998887877877777999999999988888888899999999998888877764 3456889999998


Q ss_pred             CCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccc
Q 015490          264 NNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHL  343 (406)
Q Consensus       264 ~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  343 (406)
                      +.      +++++..++.|++||+++++....+..+...+.+++|+|+++.+++++.++.|++||+++++....+. .|.
T Consensus       147 ~~------~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~  219 (289)
T cd00200         147 GT------FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR-GHE  219 (289)
T ss_pred             CC------EEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchh-hcC
Confidence            65      34455568999999999988888888888899999999999999999999999999999988888874 688


Q ss_pred             cceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490          344 GIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       344 ~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~  381 (406)
                      ..+.++.|+|++.++++++.|+.|++|++.+++.+..+
T Consensus       220 ~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~  257 (289)
T cd00200         220 NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL  257 (289)
T ss_pred             CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEc
Confidence            89999999999888888888999999999887665444

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-30  Score=206.73  Aligned_cols=247  Identities=16%  Similarity=0.246  Sum_probs=210.1

Q ss_pred             eEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCCEEEE
Q 015490          107 AELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIFAA  184 (406)
Q Consensus       107 ~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~  184 (406)
                      ..++||+.+++-+.++.+|.+|++++ |....+|.-.              +++.+.++.+| +.|.|+..+.+.+++++
T Consensus         4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~--------------nGerlGty~GHtGavW~~Did~~s~~liT   69 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSL--------------NGERLGTYDGHTGAVWCCDIDWDSKHLIT   69 (327)
T ss_pred             cccccCccccceEEecCCCcEEEEecCCCCceEEEec--------------CCceeeeecCCCceEEEEEecCCcceeee
Confidence            35789999999999999999999998 9999998543              44455566665 89999999999999999


Q ss_pred             eeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeC-----CCCEEEEEcC-------CCeeeeecccCCc
Q 015490          185 GSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGN-----RGPGRVWDLA-------SSAVATPLAKEND  252 (406)
Q Consensus       185 ~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~-----d~~i~iwd~~-------~~~~~~~~~~~~~  252 (406)
                      |+.|.++++||+++|+++..+.. ..+|..+.|+++|++++.+.+     .+.|.++|++       +.++...+..+. 
T Consensus        70 GSAD~t~kLWDv~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~-  147 (327)
T KOG0643|consen   70 GSADQTAKLWDVETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD-  147 (327)
T ss_pred             ccccceeEEEEcCCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc-
Confidence            99999999999999999987653 457999999999998887754     4679999998       344566666554 


Q ss_pred             ceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCce-EEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 015490          253 ELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK-RIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSS  331 (406)
Q Consensus       253 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~  331 (406)
                      ..++.+-|.|.++      .+.++.++|.|..||.++++ .+.....|...|+.+++++|..++++++.|.+-++||..+
T Consensus       148 skit~a~Wg~l~~------~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t  221 (327)
T KOG0643|consen  148 SKITSALWGPLGE------TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRT  221 (327)
T ss_pred             cceeeeeecccCC------EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccc
Confidence            5678899999998      46678899999999999975 4555678889999999999999999999999999999988


Q ss_pred             ceEEEEee------------------------------------------------------cccccceEEEEEcCCCCe
Q 015490          332 LQVRTAVK------------------------------------------------------KAHLGIVTALAFSYDSRA  357 (406)
Q Consensus       332 ~~~~~~~~------------------------------------------------------~~~~~~v~~~~~sp~~~~  357 (406)
                      .+.+.++.                                                      .+|-++|++++|+|+|+.
T Consensus       222 l~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGks  301 (327)
T KOG0643|consen  222 LEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKS  301 (327)
T ss_pred             eeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcc
Confidence            77666554                                                      689999999999999999


Q ss_pred             EEEEECCCcEEEEEecCC
Q 015490          358 LVSASMDSSVRVTVIEDK  375 (406)
Q Consensus       358 l~s~s~dg~i~iw~~~~~  375 (406)
                      .++|+.||.|++..++..
T Consensus       302 YsSGGEDG~VR~h~Fd~~  319 (327)
T KOG0643|consen  302 YSSGGEDGYVRLHHFDSN  319 (327)
T ss_pred             cccCCCCceEEEEEeccc
Confidence            999999999999977654

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=3.5e-30  Score=256.97  Aligned_cols=254  Identities=14%  Similarity=0.177  Sum_probs=207.8

Q ss_pred             EecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECC-CCCEEEEee
Q 015490          109 LRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDS-EGTIFAAGS  186 (406)
Q Consensus       109 ~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~  186 (406)
                      +..|.+.|.+++|+|+++++++++ |+.++||+........ ..     .......+.++..+.+++|++ ++.+|++++
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~-~~-----~~~~~~~~~~~~~v~~l~~~~~~~~~las~~  552 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDG-RD-----IHYPVVELASRSKLSGICWNSYIKSQVASSN  552 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccc-cc-----cccceEEecccCceeeEEeccCCCCEEEEEe
Confidence            456899999999999999999988 8899998764311000 00     001122334567889999987 478999999


Q ss_pred             CCCeEEEEeCCCcceEeeeeccCCceeEEEEcc-CCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCC
Q 015490          187 ENGNLRVFKWPSLEIILNESEAHASVKDLSFSP-DGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNN  265 (406)
Q Consensus       187 ~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (406)
                      .||+|++||+.+++.+..+.+|...|++++|+| ++.+|++++.|++|++||++++.....+..+  ..+.++.|++...
T Consensus       553 ~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~--~~v~~v~~~~~~g  630 (793)
T PLN00181        553 FEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK--ANICCVQFPSESG  630 (793)
T ss_pred             CCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC--CCeEEEEEeCCCC
Confidence            999999999999998888888888999999997 7889999999999999999998888777643  3577899976544


Q ss_pred             CceEEEEEEEcCCCcEEEEEeCCCce-EEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCc------eEEEEe
Q 015490          266 EDYVLYIAAITDRGASIVTWNTTTWK-RIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSL------QVRTAV  338 (406)
Q Consensus       266 ~~~~l~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~------~~~~~~  338 (406)
                      .     .+++++.|+.|++||+++.+ .+..+.+|...|.++.|. ++.+|++++.|++|++||+...      ..+..+
T Consensus       631 ~-----~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~  704 (793)
T PLN00181        631 R-----SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF  704 (793)
T ss_pred             C-----EEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEE
Confidence            3     46677899999999998765 466778898999999997 6789999999999999999743      456677


Q ss_pred             ecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490          339 KKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       339 ~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      . +|...+..+.|+|++.+|++|+.|+.|++|+...+..
T Consensus       705 ~-gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~  742 (793)
T PLN00181        705 M-GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMP  742 (793)
T ss_pred             c-CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCc
Confidence            5 8999999999999999999999999999999876543

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.6e-29  Score=220.00  Aligned_cols=265  Identities=15%  Similarity=0.166  Sum_probs=216.0

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-cc
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NV  167 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  167 (406)
                      .++..+.+.    +.....+.+|..+++-..|+|.|.++++|. .+.+|||++...+......            ++ -.
T Consensus        40 sv~ir~i~~----~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKne------------f~v~a  103 (603)
T KOG0318|consen   40 SVIIRNIDN----PASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNE------------FQVLA  103 (603)
T ss_pred             EEEEEECCC----ccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeee------------eeecc
Confidence            444444443    346778999999999999999999999886 8888998876432111111            11 23


Q ss_pred             CcEEEEEECCCCCEEEEeeC--CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCC-EEEEEeCCCCEEEEEcCCCeee
Q 015490          168 GQQLALTFDSEGTIFAAGSE--NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGK-FLVSLGNRGPGRVWDLASSAVA  244 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~iwd~~~~~~~  244 (406)
                      ++|..++|+.|++.+++.++  +.-.+++-+++|..+..+.+|...|++++|-|... +++++++|++|.+|+=.--+..
T Consensus       104 G~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk  183 (603)
T KOG0318|consen  104 GPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFK  183 (603)
T ss_pred             cccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeee
Confidence            78999999999988877654  33445555557888889999999999999998655 7999999999999986655555


Q ss_pred             eecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEee---ecCCCeEEEEEcCCCCEEEEEeCC
Q 015490          245 TPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQ---VVREPVSSFNVSADGKLLAVGTAS  321 (406)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~---~~~~~i~~~~~sp~~~~l~~~~~d  321 (406)
                      ..+.. |...+.+++|+|+|..      .++.+.|+++.+||-.+++.+..+.   .|.+.|.+++|+||++.+++++.|
T Consensus       184 ~s~r~-HskFV~~VRysPDG~~------Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaD  256 (603)
T KOG0318|consen  184 SSFRE-HSKFVNCVRYSPDGSR------FATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSAD  256 (603)
T ss_pred             ecccc-cccceeeEEECCCCCe------EEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCC
Confidence            55554 4558999999999984      5666889999999999999999998   899999999999999999999999


Q ss_pred             CcEEEEECCCceEEEEee------------------------------------------cccccceEEEEEcCCCCeEE
Q 015490          322 GDISIIDSSSLQVRTAVK------------------------------------------KAHLGIVTALAFSYDSRALV  359 (406)
Q Consensus       322 g~i~i~d~~~~~~~~~~~------------------------------------------~~~~~~v~~~~~sp~~~~l~  359 (406)
                      .+++|||+.+.+.+.++.                                          .+|...|+++..+||+++|+
T Consensus       257 kt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~  336 (603)
T KOG0318|consen  257 KTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIY  336 (603)
T ss_pred             ceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEE
Confidence            999999998776665543                                          58999999999999999999


Q ss_pred             EEECCCcEEEEEecCCcC
Q 015490          360 SASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       360 s~s~dg~i~iw~~~~~~~  377 (406)
                      +|+.||.|.-|+..++..
T Consensus       337 SgsyDG~I~~W~~~~g~~  354 (603)
T KOG0318|consen  337 SGSYDGHINSWDSGSGTS  354 (603)
T ss_pred             eeccCceEEEEecCCccc
Confidence            999999999999998765

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=6.8e-30  Score=207.83  Aligned_cols=256  Identities=15%  Similarity=0.219  Sum_probs=207.1

Q ss_pred             cEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccc
Q 015490           88 AVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLEN  166 (406)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (406)
                      .+.++....+.     +....+++|.+.|+.+.|.+|+..+++++ |.+++.|+  ..+++.            .+.++.
T Consensus        70 ~I~LWnv~gdc-----eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD--~~tG~~------------~rk~k~  130 (338)
T KOG0265|consen   70 AIVLWNVYGDC-----ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD--AETGKR------------IRKHKG  130 (338)
T ss_pred             eEEEEeccccc-----cceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe--ccccee------------eehhcc
Confidence            44555544433     45667889999999999999999999987 77766655  444443            333444


Q ss_pred             c-CcEEEEEECCCC-CEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeee
Q 015490          167 V-GQQLALTFDSEG-TIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVA  244 (406)
Q Consensus       167 ~-~~v~~~~~s~~g-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~  244 (406)
                      + .-|+.+.-+.-| .++.+|+.|+++++||+++...+..+. ...+++++.|..++..+.+|+-|+.|++||++.+...
T Consensus       131 h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~  209 (338)
T KOG0265|consen  131 HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGL  209 (338)
T ss_pred             ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcce
Confidence            4 567777744444 577889999999999999887775543 3447999999999999999999999999999999999


Q ss_pred             eecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc----eEEEEeeecC----CCeEEEEEcCCCCEEE
Q 015490          245 TPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW----KRIRTKQVVR----EPVSSFNVSADGKLLA  316 (406)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~----~~~~~~~~~~----~~i~~~~~sp~~~~l~  316 (406)
                      ..+.++ ...|+.+..++++..      +.+.+.|.++++||.+-.    +++..+.+|.    .....++|+|+++.+.
T Consensus       210 ~~lsGh-~DtIt~lsls~~gs~------llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~  282 (338)
T KOG0265|consen  210 YTLSGH-ADTITGLSLSRYGSF------LLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKIT  282 (338)
T ss_pred             EEeecc-cCceeeEEeccCCCc------cccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccc
Confidence            988876 456889999999984      556678999999999743    4566676653    3456789999999999


Q ss_pred             EEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEE
Q 015490          317 VGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTV  371 (406)
Q Consensus       317 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~  371 (406)
                      .|+.|..+++||......+..+. +|.+.|.+++|+|....|.+++.|.+|++=.
T Consensus       283 ags~dr~vyvwd~~~r~~lyklp-Gh~gsvn~~~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  283 AGSADRFVYVWDTTSRRILYKLP-GHYGSVNEVDFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             cccccceEEEeecccccEEEEcC-CcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence            99999999999999889999996 9999999999999999999999999998633

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=8.5e-31  Score=209.07  Aligned_cols=256  Identities=16%  Similarity=0.197  Sum_probs=215.5

Q ss_pred             eEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECC-CCCEEEE
Q 015490          107 AELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDS-EGTIFAA  184 (406)
Q Consensus       107 ~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~  184 (406)
                      +.+++|...|.+++|+.+|..|++++ ++++.+|+++...  ...         ......|++.|-.++|+| ...+|++
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r--~~~---------~~~~~gh~~svdql~w~~~~~d~~at   82 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR--FRK---------ELVYRGHTDSVDQLCWDPKHPDLFAT   82 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchh--hhh---------hhcccCCCcchhhheeCCCCCcceEE
Confidence            56789999999999999999999998 9999999988641  111         111123556888999988 4589999


Q ss_pred             eeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCC
Q 015490          185 GSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLN  264 (406)
Q Consensus       185 ~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (406)
                      ++.|.+|++||++.+++...+...... .-+.|+|+|.++++++.|..|...|.++.+.....+..  ..+..+.|+-++
T Consensus        83 as~dk~ir~wd~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~--~e~ne~~w~~~n  159 (313)
T KOG1407|consen   83 ASGDKTIRIWDIRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK--FEVNEISWNNSN  159 (313)
T ss_pred             ecCCceEEEEEeccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhccc--ceeeeeeecCCC
Confidence            999999999999999998877654444 45889999999999999999999999988877766532  346678888444


Q ss_pred             CCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeeccccc
Q 015490          265 NEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLG  344 (406)
Q Consensus       265 ~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  344 (406)
                      .    +|++.  .+.|.|.+......+++..++.|.....|+.|+|+|+++|+|+.|..+.+||++..-+++.+. -+.-
T Consensus       160 d----~Fflt--~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is-Rldw  232 (313)
T KOG1407|consen  160 D----LFFLT--NGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS-RLDW  232 (313)
T ss_pred             C----EEEEe--cCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec-cccC
Confidence            4    33333  457899999999999999999999999999999999999999999999999999988888886 6899


Q ss_pred             ceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCchH
Q 015490          345 IVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLNL  383 (406)
Q Consensus       345 ~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~  383 (406)
                      +|+.+.||.||++||++|.|..|-|=++++|.++-+++.
T Consensus       233 pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~  271 (313)
T KOG1407|consen  233 PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC  271 (313)
T ss_pred             ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeec
Confidence            999999999999999999999999999999998776654

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.98  E-value=4.1e-29  Score=249.34  Aligned_cols=243  Identities=11%  Similarity=0.191  Sum_probs=192.0

Q ss_pred             eeEEecCCCCceEEEEccC-CCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECC-CCCE
Q 015490          106 VAELRTDSDLPYRMAIHPH-GDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDS-EGTI  181 (406)
Q Consensus       106 ~~~~~~h~~~v~~~~~sp~-~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~-~g~~  181 (406)
                      ...+.+ ...|.+++|+|. +.+|++++ |+.+++|++..  +            +.+..+. |.+.|.+++|+| ++.+
T Consensus       526 ~~~~~~-~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~--~------------~~~~~~~~H~~~V~~l~~~p~~~~~  590 (793)
T PLN00181        526 VVELAS-RSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR--S------------QLVTEMKEHEKRVWSIDYSSADPTL  590 (793)
T ss_pred             eEEecc-cCceeeEEeccCCCCEEEEEeCCCeEEEEECCC--C------------eEEEEecCCCCCEEEEEEcCCCCCE
Confidence            344443 467999999875 66777776 88888877652  2            2223333 457899999997 7899


Q ss_pred             EEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEc-cCCCEEEEEeCCCCEEEEEcCCCe-eeeecccCCcceEEEEE
Q 015490          182 FAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFS-PDGKFLVSLGNRGPGRVWDLASSA-VATPLAKENDELFASCR  259 (406)
Q Consensus       182 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~  259 (406)
                      |++|+.||+|++||++++..+..+.. +..|.++.|+ +++.+|++|+.|+.|++||+++.+ ....+.. +...+.++.
T Consensus       591 L~Sgs~Dg~v~iWd~~~~~~~~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~-h~~~V~~v~  668 (793)
T PLN00181        591 LASGSDDGSVKLWSINQGVSIGTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG-HSKTVSYVR  668 (793)
T ss_pred             EEEEcCCCEEEEEECCCCcEEEEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecC-CCCCEEEEE
Confidence            99999999999999999888776654 4578999995 578999999999999999998765 3444443 455688999


Q ss_pred             EEcCCCCceEEEEEEEcCCCcEEEEEeCCC------ceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCce
Q 015490          260 FSPLNNEDYVLYIAAITDRGASIVTWNTTT------WKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQ  333 (406)
Q Consensus       260 ~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~------~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~  333 (406)
                      |. ++.      .+++++.|+.|++||++.      .+.+..+.+|...+.+++|+|++++|++|+.|+.|++|+.....
T Consensus       669 f~-~~~------~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~  741 (793)
T PLN00181        669 FV-DSS------TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPM  741 (793)
T ss_pred             Ee-CCC------EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCC
Confidence            97 444      345667899999999974      35678888898899999999999999999999999999987654


Q ss_pred             EEEEee------------cccccceEEEEEcCCCCeEEEEECCCcEEEEEe
Q 015490          334 VRTAVK------------KAHLGIVTALAFSYDSRALVSASMDSSVRVTVI  372 (406)
Q Consensus       334 ~~~~~~------------~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~  372 (406)
                      ++..+.            ..|...|.+++|+|++..|++|+.||.|+||++
T Consensus       742 ~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        742 PVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             ceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            432221            134567999999999999999999999999996

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=3.5e-30  Score=236.68  Aligned_cols=275  Identities=15%  Similarity=0.206  Sum_probs=228.1

Q ss_pred             CCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEeccc
Q 015490           67 RRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVE  145 (406)
Q Consensus        67 ~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~  145 (406)
                      |...+++++-..|        .+.++.+....      .+.++.+|.++|..++|+|++..+++|+ |..+++|++.   
T Consensus        19 P~rPwILtslHsG--------~IQlWDYRM~t------li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk---   81 (1202)
T KOG0292|consen   19 PKRPWILTSLHSG--------VIQLWDYRMGT------LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK---   81 (1202)
T ss_pred             CCCCEEEEeecCc--------eeeeehhhhhh------HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc---
Confidence            3667777764443        35666655543      7889999999999999999999999998 7888998887   


Q ss_pred             ccceeecceeccceeeeccccc-CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEE
Q 015490          146 NTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFL  224 (406)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  224 (406)
                                 ..+++.++.+| +.|+.+.|++.-.++++++.|.+|+||++.+++++..+.+|..-|.|..|+|....+
T Consensus        82 -----------~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlI  150 (1202)
T KOG0292|consen   82 -----------TRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLI  150 (1202)
T ss_pred             -----------cceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceE
Confidence                       45566666666 889999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCEEEEEcCCCe----------------------------eeeecccCCcceEEEEEEEcCCCCceEEEEEEEc
Q 015490          225 VSLGNRGPGRVWDLASSA----------------------------VATPLAKENDELFASCRFSPLNNEDYVLYIAAIT  276 (406)
Q Consensus       225 ~s~s~d~~i~iwd~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  276 (406)
                      +++|-|.+|++||+..-+                            .++.+...|+..|.-++|+|.-.      ++++|
T Consensus       151 VSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp------liVSG  224 (1202)
T KOG0292|consen  151 VSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP------LIVSG  224 (1202)
T ss_pred             EEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc------eEEec
Confidence            999999999999984311                            11112224566688899999776      67899


Q ss_pred             CCCcEEEEEeCCCce--EEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCC
Q 015490          277 DRGASIVTWNTTTWK--RIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYD  354 (406)
Q Consensus       277 ~~~~~i~~~d~~~~~--~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~  354 (406)
                      ++|..|++|.+..-+  .+.+..+|.+.|+++-|+|...+|++.++|++|+|||+...+.+.++. -..+..+.++-+|.
T Consensus       225 ~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr-rendRFW~laahP~  303 (1202)
T KOG0292|consen  225 ADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR-RENDRFWILAAHPE  303 (1202)
T ss_pred             CCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeee-ccCCeEEEEEecCC
Confidence            999999999987644  356778899999999999999999999999999999999999999986 45577899999999


Q ss_pred             CCeEEEEECCCcEEEEEecCCcC
Q 015490          355 SRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       355 ~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      .+++++| .|+.+-||.++...+
T Consensus       304 lNLfAAg-HDsGm~VFkleRErp  325 (1202)
T KOG0292|consen  304 LNLFAAG-HDSGMIVFKLERERP  325 (1202)
T ss_pred             cceeeee-cCCceEEEEEcccCc
Confidence            9877765 566677888875444

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=1e-30  Score=207.78  Aligned_cols=242  Identities=17%  Similarity=0.257  Sum_probs=199.5

Q ss_pred             cCCCCceEEEEccCCCeEE--EEecCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECC-CCCEEEEee
Q 015490          111 TDSDLPYRMAIHPHGDGII--CALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDS-EGTIFAAGS  186 (406)
Q Consensus       111 ~h~~~v~~~~~sp~~~~l~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~-~g~~l~~~~  186 (406)
                      .-.+.+..++|+++....+  +.+||+++||+...             ...++..++ |..+|.++.|++ +++.+++++
T Consensus        58 d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~-------------~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsS  124 (311)
T KOG0277|consen   58 DTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM-------------PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSS  124 (311)
T ss_pred             ecccceeEeeecCCCcceEEEEecCceEEEeccCC-------------CCcchhHHHhhhhheEEeccccccceeEEeec
Confidence            3467899999999765433  34599999988332             233444444 458899999998 557788889


Q ss_pred             CCCeEEEEeCCCcceEeeeeccCCceeEEEEcc-CCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCC
Q 015490          187 ENGNLRVFKWPSLEIILNESEAHASVKDLSFSP-DGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNN  265 (406)
Q Consensus       187 ~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (406)
                      .|++|++|+...++.+.++.+|...|...+|+| ..+.++++|.|+++++||++.......+..|. ..+.++.|+....
T Consensus       125 WD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~-~Eil~cdw~ky~~  203 (311)
T KOG0277|consen  125 WDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHN-SEILCCDWSKYNH  203 (311)
T ss_pred             cCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEecc-ceeEeecccccCC
Confidence            999999999999999999999999999999999 56799999999999999998765555566554 5688999999988


Q ss_pred             CceEEEEEEEcCCCcEEEEEeCCCc-eEEEEeeecCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCce-EEEEeeccc
Q 015490          266 EDYVLYIAAITDRGASIVTWNTTTW-KRIRTKQVVREPVSSFNVSAD-GKLLAVGTASGDISIIDSSSLQ-VRTAVKKAH  342 (406)
Q Consensus       266 ~~~~l~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~i~~~~~sp~-~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~  342 (406)
                      .     ++++++.|+.|+.||+++. .++..+.+|...|..++|||. ...|++++.|-+++|||..... .+.+. ..|
T Consensus       204 ~-----vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~-~~H  277 (311)
T KOG0277|consen  204 N-----VLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETV-DHH  277 (311)
T ss_pred             c-----EEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhh-hcc
Confidence            6     7889999999999999875 467888999999999999995 4688999999999999998544 34444 378


Q ss_pred             ccceEEEEEcC-CCCeEEEEECCCcEEEEEe
Q 015490          343 LGIVTALAFSY-DSRALVSASMDSSVRVTVI  372 (406)
Q Consensus       343 ~~~v~~~~~sp-~~~~l~s~s~dg~i~iw~~  372 (406)
                      +.-|..+.|++ ++.++++++.|+.++||+-
T Consensus       278 tEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  278 TEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             ceEEeccccccccCceeeecccccceeeecc
Confidence            89999999998 5678999999999999983

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.98  E-value=1.8e-30  Score=216.40  Aligned_cols=252  Identities=19%  Similarity=0.288  Sum_probs=203.8

Q ss_pred             ceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCCEE
Q 015490          105 PVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIF  182 (406)
Q Consensus       105 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l  182 (406)
                      .+.++..|++.|.+++.+|+.+++++|+ |....|  |+..++..            ...+. |...|+++.||.||.+|
T Consensus        56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~Afl--W~~~~ge~------------~~eltgHKDSVt~~~FshdgtlL  121 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFL--WDISTGEF------------AGELTGHKDSVTCCSFSHDGTLL  121 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCceEEecCCCceEEE--EEccCCcc------------eeEecCCCCceEEEEEccCceEE
Confidence            6778999999999999999888888887 555455  55443332            22233 55889999999999999


Q ss_pred             EEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEc
Q 015490          183 AAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSP  262 (406)
Q Consensus       183 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  262 (406)
                      |+|..+|.|+||+..++.....+...-..|.-+.|+|.+..|+.|+.||.+.+|.+.++...+.+.+ +...+++-.|.|
T Consensus       122 ATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~G-h~~~ct~G~f~p  200 (399)
T KOG0296|consen  122 ATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSG-HNSPCTCGEFIP  200 (399)
T ss_pred             EecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecC-CCCCcccccccC
Confidence            9999999999999999998888876666888999999999999999999999999998777777776 566788999999


Q ss_pred             CCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCC-----------------------------------------
Q 015490          263 LNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVRE-----------------------------------------  301 (406)
Q Consensus       263 ~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-----------------------------------------  301 (406)
                      +|++      ++++..|++|++||+.++.++..+....+                                         
T Consensus       201 dGKr------~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~  274 (399)
T KOG0296|consen  201 DGKR------ILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGT  274 (399)
T ss_pred             CCce------EEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCC
Confidence            9995      45667799999999999888776651100                                         


Q ss_pred             -------------CeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEE
Q 015490          302 -------------PVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVR  368 (406)
Q Consensus       302 -------------~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~  368 (406)
                                   .|.++.++..=.+.|+|+.||+|.|||+...+......  |...|..+.|-+ ..+|++++.||.|+
T Consensus       275 ~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~--he~~V~~l~w~~-t~~l~t~c~~g~v~  351 (399)
T KOG0296|consen  275 VPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE--HEDGVTKLKWLN-TDYLLTACANGKVR  351 (399)
T ss_pred             CccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc--CCCceEEEEEcC-cchheeeccCceEE
Confidence                         01112222233467889999999999999888877774  999999999998 68999999999999


Q ss_pred             EEEecCCcCCCC
Q 015490          369 VTVIEDKKKSGG  380 (406)
Q Consensus       369 iw~~~~~~~~~~  380 (406)
                      .||.++|+.+..
T Consensus       352 ~wDaRtG~l~~~  363 (399)
T KOG0296|consen  352 QWDARTGQLKFT  363 (399)
T ss_pred             eeeccccceEEE
Confidence            999999987543

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.98  E-value=1.5e-29  Score=211.98  Aligned_cols=270  Identities=17%  Similarity=0.236  Sum_probs=216.8

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCC---eEEEEe-cCCeEEEEEec
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGD---GIICAL-QNSCRLFEWDE  143 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~---~l~~~~-~~~~~i~~~~~  143 (406)
                      ..++++.+.-+|          ....|+..+     +...++.||.++|.+++|.-...   .+++++ |.++++|.|+.
T Consensus       114 ~~~~IltgsYDg----------~~riWd~~G-----k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~  178 (423)
T KOG0313|consen  114 ASKWILTGSYDG----------TSRIWDLKG-----KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV  178 (423)
T ss_pred             cCceEEEeecCC----------eeEEEecCC-----ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence            367777654433          344566654     57788999999999888854333   366666 99999999987


Q ss_pred             ccccceeecceeccceeeec-ccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCC------------------------
Q 015490          144 VENTEIRRLGVKISEKVLSQ-LENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPS------------------------  198 (406)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~------------------------  198 (406)
                      ......          .... -.|...|.+++..++|..+++|+.|.+|.||+..+                        
T Consensus       179 ~~~~~~----------~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~  248 (423)
T KOG0313|consen  179 GENKVK----------ALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGG  248 (423)
T ss_pred             chhhhh----------HHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhccc
Confidence            543221          1111 14558899999999999999999999999999321                        


Q ss_pred             -cceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcC
Q 015490          199 -LEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITD  277 (406)
Q Consensus       199 -~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  277 (406)
                       +.++..+.+|..+|.++.|++ ...+++++.|.+|+.||+.+++....+..  ...+.++.++|...      ++++++
T Consensus       249 ~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~--~ksl~~i~~~~~~~------Ll~~gs  319 (423)
T KOG0313|consen  249 TRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT--NKSLNCISYSPLSK------LLASGS  319 (423)
T ss_pred             ccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec--CcceeEeecccccc------eeeecC
Confidence             224556778888999999998 66899999999999999999998887764  34588999999766      678889


Q ss_pred             CCcEEEEEeCCCce---EEEEeeecCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCce-EEEEeecccccceEEEEEc
Q 015490          278 RGASIVTWNTTTWK---RIRTKQVVREPVSSFNVSADG-KLLAVGTASGDISIIDSSSLQ-VRTAVKKAHLGIVTALAFS  352 (406)
Q Consensus       278 ~~~~i~~~d~~~~~---~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~s  352 (406)
                      .|..+++||.+++.   ...++.+|.+.|.++.|+|.. ..|++|+.|+++++||+++.+ ++..+. +|...|.++.|.
T Consensus       320 sdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~-~h~DKvl~vdW~  398 (423)
T KOG0313|consen  320 SDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA-GHNDKVLSVDWN  398 (423)
T ss_pred             CCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec-cCCceEEEEecc
Confidence            99999999998764   467788999999999999955 567788999999999999887 888886 899999999998


Q ss_pred             CCCCeEEEEECCCcEEEEEec
Q 015490          353 YDSRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       353 p~~~~l~s~s~dg~i~iw~~~  373 (406)
                      . +.++++|+.|++|+|+.-.
T Consensus       399 ~-~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  399 E-GGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             C-CceEEeccCcceEEEeccc
Confidence            4 6789999999999998754

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.98  E-value=1.5e-31  Score=230.46  Aligned_cols=260  Identities=16%  Similarity=0.213  Sum_probs=213.4

Q ss_pred             ccccceeEEecCCCCceEEEEcc-CCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECC
Q 015490          101 LSDQPVAELRTDSDLPYRMAIHP-HGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDS  177 (406)
Q Consensus       101 ~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~  177 (406)
                      ++...+.++.+|+..|.++.|.| .+.+|++++ |+.++||++-.             ...+++++.+| .+|..++|++
T Consensus       202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~-------------~~~~lrtf~gH~k~Vrd~~~s~  268 (503)
T KOG0282|consen  202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD-------------DRRCLRTFKGHRKPVRDASFNN  268 (503)
T ss_pred             ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec-------------Ccceehhhhcchhhhhhhhccc
Confidence            34567889999999999999999 666666666 88888877653             46677777777 7899999999


Q ss_pred             CCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCC-CEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEE
Q 015490          178 EGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDG-KFLVSLGNRGPGRVWDLASSAVATPLAKENDELFA  256 (406)
Q Consensus       178 ~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~  256 (406)
                      +|..|.+++.|+.|++||+++|++...+... ..++|+.|+||+ +.+++|+.|+.|+.||+++++.++.+..+ -..+.
T Consensus       269 ~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~-~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~h-Lg~i~  346 (503)
T KOG0282|consen  269 CGTSFLSASFDRFLKLWDTETGQVLSRFHLD-KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRH-LGAIL  346 (503)
T ss_pred             cCCeeeeeecceeeeeeccccceEEEEEecC-CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhh-hhhee
Confidence            9999999999999999999999999877533 368999999998 78999999999999999999988887754 44688


Q ss_pred             EEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeee-cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceE-
Q 015490          257 SCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQV-VREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQV-  334 (406)
Q Consensus       257 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~-  334 (406)
                      .+.|-+++++      .++.++++.+++|+.+..-.+..... +.....++..+|+++++++-+.|+.|.+|.+...-. 
T Consensus       347 ~i~F~~~g~r------FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~  420 (503)
T KOG0282|consen  347 DITFVDEGRR------FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRL  420 (503)
T ss_pred             eeEEccCCce------EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccccc
Confidence            9999999996      34557899999999998766554432 234567899999999999999999999999754222 


Q ss_pred             --EEEeecccc--cceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCch
Q 015490          335 --RTAVKKAHL--GIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLN  382 (406)
Q Consensus       335 --~~~~~~~~~--~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~  382 (406)
                        ...+ .+|.  +.-..+.|||||++|++|+.||.+.+||.++-+.+..++
T Consensus       421 nkkK~f-eGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk  471 (503)
T KOG0282|consen  421 NKKKRF-EGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK  471 (503)
T ss_pred             CHhhhh-cceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccc
Confidence              2233 3664  446688999999999999999999999999987766554

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=9.7e-32  Score=222.70  Aligned_cols=233  Identities=19%  Similarity=0.322  Sum_probs=195.7

Q ss_pred             CCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCCEEEEeeCCC
Q 015490          112 DSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIFAAGSENG  189 (406)
Q Consensus       112 h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~dg  189 (406)
                      ....|+|+.+  |...+++|. |++++||+.+              ...+...+.+| +.|.|+.|.  .+.+++|+.|.
T Consensus       196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n--------------~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDs  257 (499)
T KOG0281|consen  196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKN--------------SLECLKILTGHTGSVLCLQYD--ERVIVSGSSDS  257 (499)
T ss_pred             cCCceEEEEe--cchhhhcccccCceEEeccc--------------cHHHHHhhhcCCCcEEeeecc--ceEEEecCCCc
Confidence            4578999998  556678887 9999998765              33344444444 889999984  56999999999


Q ss_pred             eEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeee--eecccCCcceEEEEEEEcCCCCc
Q 015490          190 NLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVA--TPLAKENDELFASCRFSPLNNED  267 (406)
Q Consensus       190 ~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  267 (406)
                      +|+|||+++++++..+..|...|..+.|+.  .++++++.|.++.+||+.+...+  ......|...+..+.|+..    
T Consensus       258 TvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k----  331 (499)
T KOG0281|consen  258 TVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK----  331 (499)
T ss_pred             eEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc----
Confidence            999999999999999999989999999974  48999999999999999875532  2222345666778888653    


Q ss_pred             eEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceE
Q 015490          268 YVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVT  347 (406)
Q Consensus       268 ~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~  347 (406)
                          .+++++.|.+|++|++.+.+.++++.+|...|.|+.+.  ++++++|+.|.+|++||+..|.+++.+. +|..-|.
T Consensus       332 ----yIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLe-GHEeLvR  404 (499)
T KOG0281|consen  332 ----YIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLE-GHEELVR  404 (499)
T ss_pred             ----eEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHh-chHHhhh
Confidence                34566789999999999999999999999999888875  8999999999999999999999999996 9999999


Q ss_pred             EEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490          348 ALAFSYDSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       348 ~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      ++.|.  .+.+++|+.||+|+|||+..+..
T Consensus       405 ciRFd--~krIVSGaYDGkikvWdl~aald  432 (499)
T KOG0281|consen  405 CIRFD--NKRIVSGAYDGKIKVWDLQAALD  432 (499)
T ss_pred             heeec--CceeeeccccceEEEEecccccC
Confidence            99995  56899999999999999987654

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.6e-29  Score=226.34  Aligned_cols=260  Identities=19%  Similarity=0.255  Sum_probs=215.5

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc--c
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE--N  166 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  166 (406)
                      .++.|+.....+    ......+.+.|+++.|+++|.+|++|. ++.+.||+...  .+            .+..+.  |
T Consensus       198 ~vylW~~~s~~v----~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~--~k------------~~~~~~~~h  259 (484)
T KOG0305|consen  198 SVYLWSASSGSV----TELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE--QK------------KTRTLRGSH  259 (484)
T ss_pred             eEEEEecCCCce----EEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhh--cc------------ccccccCCc
Confidence            567777766431    222233389999999999999999997 88888876543  22            222233  4


Q ss_pred             cCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEee-eeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeee
Q 015490          167 VGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILN-ESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT  245 (406)
Q Consensus       167 ~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~  245 (406)
                      ...|-+++|+  +..+.+|+.|+.|..+|++..+.... +.+|...|..++|++|++++|+|+.|+.+.|||....++..
T Consensus       260 ~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~  337 (484)
T KOG0305|consen  260 ASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKF  337 (484)
T ss_pred             CceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccE
Confidence            5889999998  66899999999999999998876655 66677799999999999999999999999999997777777


Q ss_pred             ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEE--eCCCc
Q 015490          246 PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVG--TASGD  323 (406)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~--~~dg~  323 (406)
                      .+..| ...|..++|+|....   ++..+.|..|+.|++||..+++.+...... ..|.++.|++..+-|+++  ..++.
T Consensus       338 ~~~~H-~aAVKA~awcP~q~~---lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg-sQVcsL~Wsk~~kEi~sthG~s~n~  412 (484)
T KOG0305|consen  338 TFTEH-TAAVKALAWCPWQSG---LLATGGGSADRCIKFWNTNTGARIDSVDTG-SQVCSLIWSKKYKELLSTHGYSENQ  412 (484)
T ss_pred             EEecc-ceeeeEeeeCCCccC---ceEEcCCCcccEEEEEEcCCCcEecccccC-CceeeEEEcCCCCEEEEecCCCCCc
Confidence            77654 567899999999887   445666778999999999999998887654 789999999998777764  34778


Q ss_pred             EEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCC
Q 015490          324 ISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDK  375 (406)
Q Consensus       324 i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~  375 (406)
                      |.||+..+.+.+..+. +|...|..++++|||..+++|+.|.++++|++-+.
T Consensus       413 i~lw~~ps~~~~~~l~-gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  413 ITLWKYPSMKLVAELL-GHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             EEEEeccccceeeeec-CCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            9999999999999986 99999999999999999999999999999999764

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=7.8e-29  Score=203.48  Aligned_cols=255  Identities=18%  Similarity=0.221  Sum_probs=204.0

Q ss_pred             cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccc-cCcEEEEEECCCCCE
Q 015490          104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLEN-VGQQLALTFDSEGTI  181 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~  181 (406)
                      ++...+..-.+.|.++.|+++|.++++++ |..++||+..  ++            +.+.++.. +..+..++|......
T Consensus         5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~--~g------------~~~~ti~skkyG~~~~~Fth~~~~   70 (311)
T KOG1446|consen    5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSL--SG------------KQVKTINSKKYGVDLACFTHHSNT   70 (311)
T ss_pred             ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcC--CC------------ceeeEeecccccccEEEEecCCce
Confidence            34455666778999999999999999977 7788887654  23            33333333 356778888776666


Q ss_pred             EEEeeC--CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEE
Q 015490          182 FAAGSE--NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCR  259 (406)
Q Consensus       182 l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  259 (406)
                      ++.++.  |.+|+..++.+.+.++.+.+|...|.+++.+|-+..+++++.|++|++||++..++...+.....   ..++
T Consensus        71 ~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~---pi~A  147 (311)
T KOG1446|consen   71 VIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR---PIAA  147 (311)
T ss_pred             EEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC---ccee
Confidence            666665  88999999999999999999999999999999999999999999999999998888776654433   2589


Q ss_pred             EEcCCCCceEEEEEEEcCCCcEEEEEeCCCc--eEEEEeeec---CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceE
Q 015490          260 FSPLNNEDYVLYIAAITDRGASIVTWNTTTW--KRIRTKQVV---REPVSSFNVSADGKLLAVGTASGDISIIDSSSLQV  334 (406)
Q Consensus       260 ~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~--~~~~~~~~~---~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~  334 (406)
                      |.|.|-      +.|.+.....|++||+++.  .+..++...   ....+.+.|||||++|+.++..+.+++.|.-+|..
T Consensus       148 fDp~GL------ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~  221 (311)
T KOG1446|consen  148 FDPEGL------IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV  221 (311)
T ss_pred             ECCCCc------EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE
Confidence            999985      3444444559999999874  234444433   46789999999999999999999999999999998


Q ss_pred             EEEeecccccc---eEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCch
Q 015490          335 RTAVKKAHLGI---VTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLN  382 (406)
Q Consensus       335 ~~~~~~~~~~~---v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~  382 (406)
                      ...+. .+...   -.+.+|+||++++++|+.||+|.+|+++++++++.+.
T Consensus       222 ~~tfs-~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~  271 (311)
T KOG1446|consen  222 KSTFS-GYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLR  271 (311)
T ss_pred             eeeEe-eccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEec
Confidence            88885 44433   2588999999999999999999999999998876553

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=8.2e-31  Score=217.20  Aligned_cols=249  Identities=16%  Similarity=0.229  Sum_probs=202.3

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-  167 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  167 (406)
                      .+..||.+.    .+.+..+.||++.|.|+.|.  .+.+++|+ |.++++|+|+              +.+++.++-|| 
T Consensus       218 TikiWD~n~----~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~--------------tge~l~tlihHc  277 (499)
T KOG0281|consen  218 TIKIWDKNS----LECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVN--------------TGEPLNTLIHHC  277 (499)
T ss_pred             ceEEecccc----HHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEecc--------------CCchhhHHhhhc
Confidence            344455544    35778899999999999994  46777776 8999998887              44455555555 


Q ss_pred             CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc---eEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeee
Q 015490          168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLE---IILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVA  244 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~  244 (406)
                      ..|..+.|+.  .++++++.|.++.+||+....   +...+.+|...|+.+.|+  .+++++++.|.+|++|++.+++.+
T Consensus       278 eaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efv  353 (499)
T KOG0281|consen  278 EAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFV  353 (499)
T ss_pred             ceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeee
Confidence            8899999975  489999999999999997554   234567888899999995  569999999999999999999999


Q ss_pred             eecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcE
Q 015490          245 TPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDI  324 (406)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i  324 (406)
                      +.+.+|..+ +.|+.+.   ..     ++++|+.|.+|++||+..|.+++.+++|..-|.++.|.  .+.+++|..||+|
T Consensus       354 Rtl~gHkRG-IAClQYr---~r-----lvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGki  422 (499)
T KOG0281|consen  354 RTLNGHKRG-IACLQYR---DR-----LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKI  422 (499)
T ss_pred             hhhhccccc-ceehhcc---Ce-----EEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceE
Confidence            999877553 4444443   22     67889999999999999999999999999999999997  6789999999999


Q ss_pred             EEEECCCceEE---------EEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490          325 SIIDSSSLQVR---------TAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       325 ~i~d~~~~~~~---------~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~  376 (406)
                      ++||+.++...         ..+. .|++.|..++|.  ...+++++.|.+|.|||+.++-
T Consensus       423 kvWdl~aaldpra~~~~~Cl~~lv-~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~~  480 (499)
T KOG0281|consen  423 KVWDLQAALDPRAPASTLCLRTLV-EHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNGP  480 (499)
T ss_pred             EEEecccccCCcccccchHHHhhh-hccceeEEEeec--ceEEEeccCCCeEEEEEcCCCC
Confidence            99999875432         2332 588999999995  5679999999999999997654

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=4e-30  Score=236.25  Aligned_cols=252  Identities=15%  Similarity=0.264  Sum_probs=217.3

Q ss_pred             EecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeC
Q 015490          109 LRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE  187 (406)
Q Consensus       109 ~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  187 (406)
                      ++..+..|-.++|+|...+++++- ++.+++|++...  ..+.+           ...|.++|+.+.|+|++.+|++|+.
T Consensus         5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~--tli~r-----------FdeHdGpVRgv~FH~~qplFVSGGD   71 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMG--TLIDR-----------FDEHDGPVRGVDFHPTQPLFVSGGD   71 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeecCceeeeehhhhh--hHHhh-----------hhccCCccceeeecCCCCeEEecCC
Confidence            445567889999999999999987 999999888752  22222           2236699999999999999999999


Q ss_pred             CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCc
Q 015490          188 NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNED  267 (406)
Q Consensus       188 dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (406)
                      |-.|+||+..+.+++.++.+|-+-|+.+.|++.-.+|+++|+|.+|+||+..+++++..+.+| ...|.|..|+|...  
T Consensus        72 DykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGH-nHYVMcAqFhptED--  148 (1202)
T KOG0292|consen   72 DYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGH-NHYVMCAQFHPTED--  148 (1202)
T ss_pred             ccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecC-ceEEEeeccCCccc--
Confidence            999999999999999999999999999999999999999999999999999999999999875 55789999999877  


Q ss_pred             eEEEEEEEcCCCcEEEEEeCCCce-----------------------------EEEEeeecCCCeEEEEEcCCCCEEEEE
Q 015490          268 YVLYIAAITDRGASIVTWNTTTWK-----------------------------RIRTKQVVREPVSSFNVSADGKLLAVG  318 (406)
Q Consensus       268 ~~l~~~~~~~~~~~i~~~d~~~~~-----------------------------~~~~~~~~~~~i~~~~~sp~~~~l~~~  318 (406)
                          ++++++-|.+|++||+...+                             ....+.+|...|.-++|+|.-..|++|
T Consensus       149 ----lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG  224 (1202)
T KOG0292|consen  149 ----LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSG  224 (1202)
T ss_pred             ----eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEec
Confidence                56788899999999986311                             123456788889999999999999999


Q ss_pred             eCCCcEEEEECCCceE--EEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490          319 TASGDISIIDSSSLQV--RTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       319 ~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~  381 (406)
                      +.|..|++|.+...+.  +.+. ++|...|.++-|+|...+++|.|.|++|+|||+...+.+..|
T Consensus       225 ~DDRqVKlWrmnetKaWEvDtc-rgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tf  288 (1202)
T KOG0292|consen  225 ADDRQVKLWRMNETKAWEVDTC-RGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF  288 (1202)
T ss_pred             CCcceeeEEEeccccceeehhh-hcccCCcceEEecCccceeEecCCCccEEEEecccccceeee
Confidence            9999999999875442  3334 489999999999999999999999999999999998887776

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.4e-29  Score=232.57  Aligned_cols=261  Identities=19%  Similarity=0.231  Sum_probs=205.1

Q ss_pred             eeEEe-cCCCCceEEEEccCCCeEEEEe-cCCeEEEEEeccc------c---------------------c-ceee----
Q 015490          106 VAELR-TDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVE------N---------------------T-EIRR----  151 (406)
Q Consensus       106 ~~~~~-~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~------~---------------------~-~~~~----  151 (406)
                      .+.+. .|.+.|.+|.||+||+|||+|+ |+-++||.+-...      +                     . ....    
T Consensus       259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~  338 (712)
T KOG0283|consen  259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS  338 (712)
T ss_pred             eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence            34555 8999999999999999999999 9999999876500      0                     0 0000    


Q ss_pred             -----------c---ceeccceeeeccccc-CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEE
Q 015490          152 -----------L---GVKISEKVLSQLENV-GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLS  216 (406)
Q Consensus       152 -----------~---~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~  216 (406)
                                 +   ......+++..+.+| +.|..+.||.++ +|++++.|.+|++|++...+++..+ .|.+-|+|++
T Consensus       339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVa  416 (712)
T KOG0283|consen  339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVA  416 (712)
T ss_pred             cccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEE-ecCCeeEEEE
Confidence                       0   000124455556666 889999999775 7889999999999999988888654 6888999999


Q ss_pred             Ecc-CCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEE
Q 015490          217 FSP-DGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRT  295 (406)
Q Consensus       217 ~s~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~  295 (406)
                      |+| |.++|++|+-|+.++||++...+.+.....+  ..|++++|.|+|+.      ++.|..+|.+++|+....+....
T Consensus       417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~--~lITAvcy~PdGk~------avIGt~~G~C~fY~t~~lk~~~~  488 (712)
T KOG0283|consen  417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR--DLITAVCYSPDGKG------AVIGTFNGYCRFYDTEGLKLVSD  488 (712)
T ss_pred             ecccCCCcEeecccccceEEeecCcCeeEeehhhh--hhheeEEeccCCce------EEEEEeccEEEEEEccCCeEEEe
Confidence            999 7889999999999999999887776655433  67999999999984      56678899999999998776655


Q ss_pred             eeec--------CCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCceEEEEeecccccc-eEEEEEcCCCCeEEEEECCC
Q 015490          296 KQVV--------REPVSSFNVSAD-GKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGI-VTALAFSYDSRALVSASMDS  365 (406)
Q Consensus       296 ~~~~--------~~~i~~~~~sp~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-v~~~~~sp~~~~l~s~s~dg  365 (406)
                      ...+        ...|+.+.|.|. ...+++.+.|..|+|||.++..++..++..++.. -....|+.||++|++++.|.
T Consensus       489 ~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs  568 (712)
T KOG0283|consen  489 FHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDS  568 (712)
T ss_pred             eeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCc
Confidence            4332        236999999984 3457777899999999998888888887334332 35778999999999999999


Q ss_pred             cEEEEEecCCc
Q 015490          366 SVRVTVIEDKK  376 (406)
Q Consensus       366 ~i~iw~~~~~~  376 (406)
                      .|++|++....
T Consensus       569 ~VYiW~~~~~~  579 (712)
T KOG0283|consen  569 WVYIWKNDSFN  579 (712)
T ss_pred             eEEEEeCCCCc
Confidence            99999985443

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.97  E-value=5.7e-29  Score=206.98  Aligned_cols=260  Identities=15%  Similarity=0.225  Sum_probs=221.3

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-  167 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  167 (406)
                      .+..||..+    .+...++.||-..|..+++|+-..|+++++ |+.++-|++.              ..+.++.+.+| 
T Consensus       174 tikIwDlat----g~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe--------------~nkvIR~YhGHl  235 (460)
T KOG0285|consen  174 TIKIWDLAT----GQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE--------------YNKVIRHYHGHL  235 (460)
T ss_pred             eeEEEEccc----CeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEech--------------hhhhHHHhcccc
Confidence            556677766    357788999999999999999999999998 8888888776              44556666666 


Q ss_pred             CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeec
Q 015490          168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPL  247 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  247 (406)
                      ..|.|++..|.-..|++|+.|.+++|||+++...+..+.+|...|..+.+.|-...+++||.|++|++||++.|+....+
T Consensus       236 S~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tl  315 (460)
T KOG0285|consen  236 SGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITL  315 (460)
T ss_pred             ceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEee
Confidence            88999999999999999999999999999999999999999999999999998888999999999999999999988887


Q ss_pred             ccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 015490          248 AKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISII  327 (406)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~  327 (406)
                      .. +...+.+++.+|...      .+++++ ...|+-|++..+..+..+.+|...|.+++...|+ ++++|+++|.+.+|
T Consensus       316 t~-hkksvral~lhP~e~------~fASas-~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fw  386 (460)
T KOG0285|consen  316 TH-HKKSVRALCLHPKEN------LFASAS-PDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFW  386 (460)
T ss_pred             ec-ccceeeEEecCCchh------hhhccC-CccceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEE
Confidence            75 456688999999875      345544 4569999999999999999999999999998887 78899999999999


Q ss_pred             ECCCceEEEEeec-------ccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490          328 DSSSLQVRTAVKK-------AHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       328 d~~~~~~~~~~~~-------~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~  376 (406)
                      |.+++-..+....       .....|.+.+|...|..|++|..|.+|++|.-....
T Consensus       387 dwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~a  442 (460)
T KOG0285|consen  387 DWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEHA  442 (460)
T ss_pred             ecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccccc
Confidence            9998755444310       123468899999999999999999999999876543

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2e-29  Score=200.51  Aligned_cols=245  Identities=16%  Similarity=0.226  Sum_probs=197.6

Q ss_pred             eEEEEccC--CCeEEEEe-----cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCC-CEEEEeeCC
Q 015490          117 YRMAIHPH--GDGIICAL-----QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEG-TIFAAGSEN  188 (406)
Q Consensus       117 ~~~~~sp~--~~~l~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~d  188 (406)
                      +++.|||-  ++..++++     .|..+++.++.....         .-...+.+.-.+.+..++|+++. +.+++++.|
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~---------gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GD   82 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPK---------GIQECQSYDTEDGLFDVAWSENHENQVIAASGD   82 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCC---------CeEEEEeeecccceeEeeecCCCcceEEEEecC
Confidence            67889983  33333321     566788888775333         22334455667889999999954 778889999


Q ss_pred             CeEEEEeCCC-cceEeeeeccCCceeEEEEccC-CCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCC
Q 015490          189 GNLRVFKWPS-LEIILNESEAHASVKDLSFSPD-GKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNE  266 (406)
Q Consensus       189 g~i~vwd~~~-~~~~~~~~~~~~~i~~~~~s~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (406)
                      |++++||+.. ..++..++.|..+|.++.|++- ++.++++|.|++|++|+...++.+.++.+ +...|....|+|....
T Consensus        83 GSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~g-h~~~Iy~a~~sp~~~n  161 (311)
T KOG0277|consen   83 GSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNG-HNSCIYQAAFSPHIPN  161 (311)
T ss_pred             ceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecC-CccEEEEEecCCCCCC
Confidence            9999999643 3467778888889999999984 55788889999999999999999999887 4567889999999887


Q ss_pred             ceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCce-EEEEeeccccc
Q 015490          267 DYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSA-DGKLLAVGTASGDISIIDSSSLQ-VRTAVKKAHLG  344 (406)
Q Consensus       267 ~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~  344 (406)
                           ++++.+.|+.+++||++.......+..|...|.++.|+. +.+.+++|+.|+.|++||+++.+ ++..+ .+|.-
T Consensus       162 -----lfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL-~gh~~  235 (311)
T KOG0277|consen  162 -----LFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL-NGHGL  235 (311)
T ss_pred             -----eEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceee-cCCce
Confidence                 678889999999999987555555888988999999998 66789999999999999998754 56666 49999


Q ss_pred             ceEEEEEcCC-CCeEEEEECCCcEEEEEecCCcC
Q 015490          345 IVTALAFSYD-SRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       345 ~v~~~~~sp~-~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      .|+.+.|||. ...|++++.|-+++|||...+..
T Consensus       236 AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds  269 (311)
T KOG0277|consen  236 AVRKVKFSPHHASLLASASYDMTVRIWDPERQDS  269 (311)
T ss_pred             EEEEEecCcchhhHhhhccccceEEecccccchh
Confidence            9999999996 46789999999999999986543

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=6.6e-29  Score=203.00  Aligned_cols=253  Identities=13%  Similarity=0.260  Sum_probs=215.4

Q ss_pred             cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEE
Q 015490          104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIF  182 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  182 (406)
                      ..++++..|.+.|+++.|+|....|++++ |+++++|++....           ..+..+.++...+|.++.|+|.|.+|
T Consensus       163 PvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~s-----------aKrA~K~~qd~~~vrsiSfHPsGefl  231 (430)
T KOG0640|consen  163 PVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTS-----------AKRAFKVFQDTEPVRSISFHPSGEFL  231 (430)
T ss_pred             ceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHH-----------HHHHHHHhhccceeeeEeecCCCceE
Confidence            35678999999999999999999999998 9999999987543           23344456677899999999999999


Q ss_pred             EEeeCCCeEEEEeCCCcceEeee---eccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeeccc-CCcceEEEE
Q 015490          183 AAGSENGNLRVFKWPSLEIILNE---SEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAK-ENDELFASC  258 (406)
Q Consensus       183 ~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~  258 (406)
                      ++|....++++||+++-++...-   .+|.+.|+++.+++.+++.++++.||.|++||--+++++.++.. |.+..|.+.
T Consensus       232 lvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa  311 (430)
T KOG0640|consen  232 LVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSA  311 (430)
T ss_pred             EEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeE
Confidence            99999999999999998876543   24555999999999999999999999999999999999998865 445678899


Q ss_pred             EEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC-----CCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCc
Q 015490          259 RFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR-----EPVSSFNVSADGKLLAVGTA-SGDISIIDSSSL  332 (406)
Q Consensus       259 ~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-----~~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~~~  332 (406)
                      .|..++++      +.+.+.|..+++|.+.+++.+..+.+..     ..-+...|+....|++.-.+ .+.+.-||.++.
T Consensus       312 ~Ftkn~ky------iLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta  385 (430)
T KOG0640|consen  312 VFTKNGKY------ILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA  385 (430)
T ss_pred             EEccCCeE------EeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch
Confidence            99999984      4566789999999999999999887652     12245668888888887665 677999999999


Q ss_pred             eEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490          333 QVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       333 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~  373 (406)
                      ..+..+..+|++.++.+.-||.+..+++|+.|..+|+|--+
T Consensus       386 dr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  386 DRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             hhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence            88888877999999999999999999999999999999754

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=1.1e-28  Score=222.84  Aligned_cols=267  Identities=18%  Similarity=0.228  Sum_probs=219.9

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEE-ccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-c
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAI-HPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-N  166 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  166 (406)
                      .++.++.+.    .+....+-|..+.|..|.| .|+.++|++++ ...+++|+.....              +. .+. |
T Consensus       304 nl~l~d~~~----l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~--------------c~-ii~GH  364 (775)
T KOG0319|consen  304 NLFLYDEDE----LTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSY--------------CQ-IIPGH  364 (775)
T ss_pred             eEEEEEccc----cEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCc--------------eE-EEeCc
Confidence            444455444    3466778888999999997 56778888886 8888888544321              11 233 4


Q ss_pred             cCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc----eEeeeeccCCceeEEEEccCC-CEEEEEeCCCCEEEEEcCCC
Q 015490          167 VGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLE----IILNESEAHASVKDLSFSPDG-KFLVSLGNRGPGRVWDLASS  241 (406)
Q Consensus       167 ~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~i~~~~~s~~~-~~l~s~s~d~~i~iwd~~~~  241 (406)
                      ...|.++....+|-+|++|+.|.++++|.++++.    ++....+|...|.+++++..+ .+|+++|.|+++++|++...
T Consensus       365 ~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s  444 (775)
T KOG0319|consen  365 TEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKS  444 (775)
T ss_pred             hhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCc
Confidence            4778999976788999999999999999885443    344566788899999997654 48999999999999999763


Q ss_pred             eeee---e-----cccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCC
Q 015490          242 AVAT---P-----LAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGK  313 (406)
Q Consensus       242 ~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~  313 (406)
                      +...   .     ....|+..|.+++.+|+.+      ++++++.|.+.++|++.......++.+|...+.++.|+|..+
T Consensus       445 ~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndk------LiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq  518 (775)
T KOG0319|consen  445 KETAFPIVLTCRYTERAHDKDINCVAIAPNDK------LIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQ  518 (775)
T ss_pred             ccccccceehhhHHHHhhcccccceEecCCCc------eEEecccccceeeecccCceEEEEeeCCccceEEEEeccccc
Confidence            2211   1     1224667799999999998      689999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCch
Q 015490          314 LLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLN  382 (406)
Q Consensus       314 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~  382 (406)
                      .+++++.|++|+||.+.++.++.++. +|...|..+.|-.+|+.|++++.||-|++|++++++.+.++.
T Consensus       519 ~laT~SgD~TvKIW~is~fSClkT~e-GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD  586 (775)
T KOG0319|consen  519 LLATCSGDKTVKIWSISTFSCLKTFE-GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD  586 (775)
T ss_pred             eeEeccCCceEEEEEeccceeeeeec-CccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh
Confidence            99999999999999999999999996 999999999999999999999999999999999998876553

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=7.9e-28  Score=223.08  Aligned_cols=238  Identities=11%  Similarity=0.145  Sum_probs=184.9

Q ss_pred             eEEecCCCCceEEEEcc-CCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCC-CEE
Q 015490          107 AELRTDSDLPYRMAIHP-HGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEG-TIF  182 (406)
Q Consensus       107 ~~~~~h~~~v~~~~~sp-~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g-~~l  182 (406)
                      ..+.+|.+.|.+++|+| ++.+|++++ |+.+++|++......  ..     ....+..+. |...|.+++|+|++ ++|
T Consensus        69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~--~~-----~~~~l~~L~gH~~~V~~l~f~P~~~~iL  141 (493)
T PTZ00421         69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLT--QN-----ISDPIVHLQGHTKKVGIVSFHPSAMNVL  141 (493)
T ss_pred             ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccc--cc-----cCcceEEecCCCCcEEEEEeCcCCCCEE
Confidence            45789999999999999 788888887 899999887542110  00     112233334 44789999999986 799


Q ss_pred             EEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEc
Q 015490          183 AAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSP  262 (406)
Q Consensus       183 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  262 (406)
                      ++|+.|++|+|||+++++....+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+..+.......+.|.+
T Consensus       142 aSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~  221 (493)
T PTZ00421        142 ASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAK  221 (493)
T ss_pred             EEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcC
Confidence            99999999999999999988888888889999999999999999999999999999999988888776655556778888


Q ss_pred             CCCCceEEEEE-EEcCCCcEEEEEeCCCce-EEEEeeec-CCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCceEEEEe
Q 015490          263 LNNEDYVLYIA-AITDRGASIVTWNTTTWK-RIRTKQVV-REPVSSFNVSADGKLLAVGTA-SGDISIIDSSSLQVRTAV  338 (406)
Q Consensus       263 ~~~~~~~l~~~-~~~~~~~~i~~~d~~~~~-~~~~~~~~-~~~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~~~~~~~~~  338 (406)
                      ++..   ++.+ .+.+.++.|++||+++.. ++.....+ ...+....|++++++|++++. |+.|++||+.+++.....
T Consensus       222 ~~~~---ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~  298 (493)
T PTZ00421        222 RKDL---IITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS  298 (493)
T ss_pred             CCCe---EEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence            8764   2111 123468999999998754 33333323 244566779999999998874 999999999998887766


Q ss_pred             ecccccceEEEEEcCC
Q 015490          339 KKAHLGIVTALAFSYD  354 (406)
Q Consensus       339 ~~~~~~~v~~~~~sp~  354 (406)
                      ...+..++..++|.|.
T Consensus       299 ~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        299 SYSSVEPHKGLCMMPK  314 (493)
T ss_pred             eccCCCCCcceEeccc
Confidence            5345667888999885

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.3e-28  Score=218.55  Aligned_cols=274  Identities=13%  Similarity=0.171  Sum_probs=225.2

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVEN  146 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~  146 (406)
                      .+.+++.+--.|        .+.++.++..      ..+..+.-..-+|.+..|-+..+++++|+ |..++||+++.   
T Consensus        24 tePw~la~LynG--------~V~IWnyetq------tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt---   86 (794)
T KOG0276|consen   24 TEPWILAALYNG--------DVQIWNYETQ------TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT---   86 (794)
T ss_pred             CCceEEEeeecC--------eeEEEecccc------eeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc---
Confidence            566666553222        2344444443      37778888899999999999999999998 78888888763   


Q ss_pred             cceeecceeccceeeeccc-ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc-ceEeeeeccCCceeEEEEcc-CCCE
Q 015490          147 TEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSL-EIILNESEAHASVKDLSFSP-DGKF  223 (406)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~-~~~~  223 (406)
                                 .+.+..++ |.+.|+|++.+|.-.++++++.|-+|++||.+.+ .+.+.+.+|..-|.+++|+| |.+.
T Consensus        87 -----------~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~nt  155 (794)
T KOG0276|consen   87 -----------GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNT  155 (794)
T ss_pred             -----------ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccc
Confidence                       33333444 4588999999999999999999999999999764 56777888888999999999 5679


Q ss_pred             EEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCe
Q 015490          224 LVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPV  303 (406)
Q Consensus       224 l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i  303 (406)
                      +++++-|++|++|.+.+..+..++.+| ...+.++.|-+.+.+.    .+.++++|..+++||.++..++.++.+|...|
T Consensus       156 FaS~sLDrTVKVWslgs~~~nfTl~gH-ekGVN~Vdyy~~gdkp----ylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nv  230 (794)
T KOG0276|consen  156 FASASLDRTVKVWSLGSPHPNFTLEGH-EKGVNCVDYYTGGDKP----YLISGADDLTIKVWDYQTKSCVQTLEGHTNNV  230 (794)
T ss_pred             eeeeeccccEEEEEcCCCCCceeeecc-ccCcceEEeccCCCcc----eEEecCCCceEEEeecchHHHHHHhhcccccc
Confidence            999999999999999999999999865 4568899999888652    35678899999999999999999999999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490          304 SSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       304 ~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~  376 (406)
                      ..++|+|.-..+++|++||+++||+..+.+...++. ..-+.|++++-.+.++.++.|...|.| +..+...+
T Consensus       231 s~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn-~gleRvW~I~~~k~~~~i~vG~Deg~i-~v~lgree  301 (794)
T KOG0276|consen  231 SFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLN-YGLERVWCIAAHKGDGKIAVGFDEGSV-TVKLGREE  301 (794)
T ss_pred             eEEEecCCCcEEEEecCCccEEEecCcceehhhhhh-cCCceEEEEeecCCCCeEEEeccCCcE-EEEccCCC
Confidence            999999999999999999999999999988888875 556789999998888888887766655 44554433

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=1.8e-28  Score=221.91  Aligned_cols=273  Identities=18%  Similarity=0.200  Sum_probs=228.1

Q ss_pred             CccEEEEEEecCCCCccccc----eeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceee
Q 015490           86 RNAVLLSHFDFASNSLSDQP----VAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVL  161 (406)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~----~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  161 (406)
                      .|.+..+.++... ...+++    -.++.||...|.++++|.+...+++++.+.++||+.+              +.+++
T Consensus       343 nNtv~~ysl~~s~-~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~--------------t~kci  407 (888)
T KOG0306|consen  343 NNTVEWYSLENSG-KTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRD--------------TLKCI  407 (888)
T ss_pred             cCceEEEEeccCC-CCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEcc--------------Cccee
Confidence            4566777776622 211222    2467899999999999999998888889999998876              34455


Q ss_pred             ecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCC-
Q 015490          162 SQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLAS-  240 (406)
Q Consensus       162 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~-  240 (406)
                      +++... .+.+..|-|.++++++|...|.+.+||+.....+..+..|.+.|++++.+||++.++++|.|.+|++||..- 
T Consensus       408 RTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~  486 (888)
T KOG0306|consen  408 RTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLV  486 (888)
T ss_pred             EEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEE
Confidence            555544 788999999999999999999999999999988888888999999999999999999999999999999742 


Q ss_pred             ----Ceeeeeccc------CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcC
Q 015490          241 ----SAVATPLAK------ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSA  310 (406)
Q Consensus       241 ----~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp  310 (406)
                          +...+.+..      .-...+.|+++||+++.      ++.+--|.++++|-+++.+....+.+|.-+|.||..||
T Consensus       487 ~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~------LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~  560 (888)
T KOG0306|consen  487 VSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL------LAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP  560 (888)
T ss_pred             eccCcccceeeeeccceEEeccccEEEEEEcCCCcE------EEEEeccCeEEEEEecceeeeeeecccccceeEEeccC
Confidence                111111111      12345789999999993      45556799999999999999999999999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490          311 DGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       311 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~  381 (406)
                      |++.+++|+.|.+|++|-++-|.+...+. +|...|.++.|.|....+.++|.|+.|+-||-..-+.+..+
T Consensus       561 DSklivTgSADKnVKiWGLdFGDCHKS~f-AHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L  630 (888)
T KOG0306|consen  561 DSKLIVTGSADKNVKIWGLDFGDCHKSFF-AHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL  630 (888)
T ss_pred             CcCeEEeccCCCceEEeccccchhhhhhh-cccCceeEEEEcccceeEEEecCcceEEeechhhhhhheee
Confidence            99999999999999999999999999986 89999999999999999999999999999998876665443

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=1.4e-27  Score=221.48  Aligned_cols=207  Identities=14%  Similarity=0.177  Sum_probs=168.9

Q ss_pred             cccCcEEEEEECC-CCCEEEEeeCCCeEEEEeCCCcc-------eEeeeeccCCceeEEEEccCC-CEEEEEeCCCCEEE
Q 015490          165 ENVGQQLALTFDS-EGTIFAAGSENGNLRVFKWPSLE-------IILNESEAHASVKDLSFSPDG-KFLVSLGNRGPGRV  235 (406)
Q Consensus       165 ~~~~~v~~~~~s~-~g~~l~~~~~dg~i~vwd~~~~~-------~~~~~~~~~~~i~~~~~s~~~-~~l~s~s~d~~i~i  235 (406)
                      .|.+.|.+++|+| ++++|++|+.|++|++||+.++.       .+..+.+|...|.+++|+|++ ++|++++.|++|+|
T Consensus        73 GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrI  152 (493)
T PTZ00421         73 GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNV  152 (493)
T ss_pred             CCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEE
Confidence            3558899999999 88999999999999999997652       455677788899999999985 68999999999999


Q ss_pred             EEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCC-eEEEEEcCCCCE
Q 015490          236 WDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREP-VSSFNVSADGKL  314 (406)
Q Consensus       236 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-i~~~~~sp~~~~  314 (406)
                      ||+++++....+..+ ...+.+++|+|++.      ++++++.|+.|++||+++++.+..+..|.+. ...+.|.+++..
T Consensus       153 WDl~tg~~~~~l~~h-~~~V~sla~spdG~------lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~  225 (493)
T PTZ00421        153 WDVERGKAVEVIKCH-SDQITSLEWNLDGS------LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDL  225 (493)
T ss_pred             EECCCCeEEEEEcCC-CCceEEEEEECCCC------EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCe
Confidence            999999888877654 45689999999987      4677789999999999999998888888654 456789998877


Q ss_pred             EEEEe----CCCcEEEEECCCceE-EEEeecccccceEEEEEcCCCCeEEEEE-CCCcEEEEEecCCcCC
Q 015490          315 LAVGT----ASGDISIIDSSSLQV-RTAVKKAHLGIVTALAFSYDSRALVSAS-MDSSVRVTVIEDKKKS  378 (406)
Q Consensus       315 l~~~~----~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~s~s-~dg~i~iw~~~~~~~~  378 (406)
                      +++++    .|+.|++||+++... .......+...+....|++++++|++++ .|+.|++||+.+++..
T Consensus       226 ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~  295 (493)
T PTZ00421        226 IITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLT  295 (493)
T ss_pred             EEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceE
Confidence            77654    478999999987543 3333212334566778999999998887 5999999999987753

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.6e-28  Score=210.87  Aligned_cols=247  Identities=19%  Similarity=0.249  Sum_probs=202.1

Q ss_pred             ceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCC-CE
Q 015490          105 PVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEG-TI  181 (406)
Q Consensus       105 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g-~~  181 (406)
                      ...++.-..+.|+++.|-.||+++++|. .|.++||+...              ...++.+. |..++..+.|+|++ ..
T Consensus        60 ~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~--------------r~iLR~~~ah~apv~~~~f~~~d~t~  125 (487)
T KOG0310|consen   60 VRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS--------------RVILRQLYAHQAPVHVTKFSPQDNTM  125 (487)
T ss_pred             hhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc--------------HHHHHHHhhccCceeEEEecccCCeE
Confidence            4445555678999999999999999987 88888877332              22233333 55889999999954 77


Q ss_pred             EEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCC-CEEEEEeCCCCEEEEEcCCC-eeeeecccCCcceEEEEE
Q 015490          182 FAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDG-KFLVSLGNRGPGRVWDLASS-AVATPLAKENDELFASCR  259 (406)
Q Consensus       182 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~s~s~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~  259 (406)
                      |++|+.|+.+++||+.+......+.+|.+.|.|.+|+|.. ..+++||.||.|++||.++. ..+..+  .++.+|..+.
T Consensus       126 l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el--nhg~pVe~vl  203 (487)
T KOG0310|consen  126 LVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL--NHGCPVESVL  203 (487)
T ss_pred             EEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe--cCCCceeeEE
Confidence            8889999999999999988766888999999999999964 48899999999999999987 444444  5677899999


Q ss_pred             EEcCCCCceEEEEEEEcCCCcEEEEEeCCCce-EEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEe
Q 015490          260 FSPLNNEDYVLYIAAITDRGASIVTWNTTTWK-RIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAV  338 (406)
Q Consensus       260 ~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~  338 (406)
                      +-|.|..      +++ .....+++||+-+|. .+..+..|...|+|+++..++..|++|+-|+.|++||+.+.+.+..+
T Consensus       204 ~lpsgs~------ias-AgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~  276 (487)
T KOG0310|consen  204 ALPSGSL------IAS-AGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW  276 (487)
T ss_pred             EcCCCCE------EEE-cCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEee
Confidence            9999873      233 236789999998654 44445558899999999999999999999999999999999999998


Q ss_pred             ecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490          339 KKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       339 ~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~  376 (406)
                      .  ..++|.+++.+|+++.++.|..||.+.+=+....+
T Consensus       277 ~--~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~  312 (487)
T KOG0310|consen  277 K--YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKK  312 (487)
T ss_pred             e--cccceeeEEecCCCceEEEecccceeeeehhhccc
Confidence            5  78999999999999999999999988776554433

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=4.6e-29  Score=205.21  Aligned_cols=281  Identities=14%  Similarity=0.159  Sum_probs=231.0

Q ss_pred             cccCCCCCcEEEEEcCCCCCCCCcCccEEEEEEecCC--CCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEE
Q 015490           62 KSDDIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFAS--NSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRL  138 (406)
Q Consensus        62 ~~~~~~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i  138 (406)
                      ....+|++++++.+.-.        ..++++.+....  +.+..+....+.-+.++|.|+.|+.|...+++|+ |+.+++
T Consensus       218 cA~FSPDgqyLvsgSvD--------GFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv  289 (508)
T KOG0275|consen  218 CARFSPDGQYLVSGSVD--------GFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV  289 (508)
T ss_pred             heeeCCCCceEeecccc--------ceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence            34456778887754322        234555544322  2334456667788999999999999999999998 999999


Q ss_pred             EEEecccccceeecceeccceeeeccc--ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEE
Q 015490          139 FEWDEVENTEIRRLGVKISEKVLSQLE--NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLS  216 (406)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~  216 (406)
                      |.+.              ++.+++.+.  |...|+|+.||.|+..+.+++.|.++++.-+.+|+++..+.+|.+-|+...
T Consensus       290 Wri~--------------tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~  355 (508)
T KOG0275|consen  290 WRIE--------------TGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEAT  355 (508)
T ss_pred             EEEe--------------cchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceE
Confidence            8876              334444443  558899999999999999999999999999999999999999999999999


Q ss_pred             EccCCCEEEEEeCCCCEEEEEcCCCeeeeecccC-CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEE
Q 015490          217 FSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKE-NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRT  295 (406)
Q Consensus       217 ~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~  295 (406)
                      |.+||.++++++.||+|++|+.++.++..++... .+..+..+-.-|.+..     -...+....++++.++.. +.++.
T Consensus       356 ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpe-----h~iVCNrsntv~imn~qG-QvVrs  429 (508)
T KOG0275|consen  356 FTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPE-----HFIVCNRSNTVYIMNMQG-QVVRS  429 (508)
T ss_pred             EcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCc-----eEEEEcCCCeEEEEeccc-eEEee
Confidence            9999999999999999999999999999888753 4456777888887765     234446788999999864 66777


Q ss_pred             eeec---CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEE
Q 015490          296 KQVV---REPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTV  371 (406)
Q Consensus       296 ~~~~---~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~  371 (406)
                      +...   .+...+.+.||.|.++++.++|+.++.|...+|+...++. .|...|..++-+|..+.|++-+.||.+++|.
T Consensus       430 fsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~-VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  430 FSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLP-VHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             eccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeee-cccccccccccCcccchhhhhcccchhhhcC
Confidence            7543   3567788899999999999999999999999999999986 8999999999999999999999999999995

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=9.2e-28  Score=217.32  Aligned_cols=247  Identities=16%  Similarity=0.180  Sum_probs=212.3

Q ss_pred             cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCCE
Q 015490          104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTI  181 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~  181 (406)
                      +.++++..  +-+.+..|-|.+++++.|. .|.+.+|++....              .+.+.+ |.+.+..++.+||++.
T Consensus       405 kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~--------------l~Eti~AHdgaIWsi~~~pD~~g  468 (888)
T KOG0306|consen  405 KCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASAS--------------LVETIRAHDGAIWSISLSPDNKG  468 (888)
T ss_pred             ceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhh--------------hhhhhhccccceeeeeecCCCCc
Confidence            46777753  4889999999999999998 7888888876432              222233 5689999999999999


Q ss_pred             EEEeeCCCeEEEEeCCC-----cceEe-------eeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeeccc
Q 015490          182 FAAGSENGNLRVFKWPS-----LEIIL-------NESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAK  249 (406)
Q Consensus       182 l~~~~~dg~i~vwd~~~-----~~~~~-------~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  249 (406)
                      +++|+.|.+|++||+.-     +....       ....-...|.|+.+||||++|+++--|++++||-+.+.+....+.+
T Consensus       469 ~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYG  548 (888)
T KOG0306|consen  469 FVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYG  548 (888)
T ss_pred             eEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecc
Confidence            99999999999999731     21111       1122344799999999999999999999999999999888888876


Q ss_pred             CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 015490          250 ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDS  329 (406)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~  329 (406)
                      | .-+|.|+..+|+++      ++++++.|..|++|-++-|.+.+.+-.|...|.++.|-|+...+++++.|+.|+-||.
T Consensus       549 H-kLPV~smDIS~DSk------livTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg  621 (888)
T KOG0306|consen  549 H-KLPVLSMDISPDSK------LIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDG  621 (888)
T ss_pred             c-ccceeEEeccCCcC------eEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeech
Confidence            5 55788999999998      5778899999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490          330 SSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIED  374 (406)
Q Consensus       330 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~  374 (406)
                      ...+.+..+. +|...|++++.+|+|.+++++|.|.+|++|.-..
T Consensus       622 ~kFe~iq~L~-~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  622 EKFEEIQKLD-GHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             hhhhhheeec-cchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence            9999999996 8999999999999999999999999999998654

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.2e-26  Score=181.88  Aligned_cols=258  Identities=18%  Similarity=0.240  Sum_probs=200.4

Q ss_pred             EEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEeccc-ccceeecce-eccceeeecccccCcEEEEEECCCCCEEEE
Q 015490          108 ELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVE-NTEIRRLGV-KISEKVLSQLENVGQQLALTFDSEGTIFAA  184 (406)
Q Consensus       108 ~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  184 (406)
                      .+-..+..|.+++|+|.|...++|+ +.+.+|..+.... ....+.... +|...+.+.-.|.+.|.|.+|||+|+++++
T Consensus        27 ~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliat  106 (350)
T KOG0641|consen   27 NILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIAT  106 (350)
T ss_pred             EEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEe
Confidence            3445677899999999999999887 7777776554321 111111111 112223333344589999999999999999


Q ss_pred             eeCCCeEEEEeCCCcceE-----eeeeccCCceeEEEEccC----CCEEEEEe-CCCCEEEEEcCCCeeeeecccCCcce
Q 015490          185 GSENGNLRVFKWPSLEII-----LNESEAHASVKDLSFSPD----GKFLVSLG-NRGPGRVWDLASSAVATPLAKENDEL  254 (406)
Q Consensus       185 ~~~dg~i~vwd~~~~~~~-----~~~~~~~~~i~~~~~s~~----~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~~~~~  254 (406)
                      |+.|.+|++..++...+.     ..+.-|.+.|.+++|..+    +..|++++ .|..|++-|...|+..+.+.++.+..
T Consensus       107 gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghi  186 (350)
T KOG0641|consen  107 GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHI  186 (350)
T ss_pred             cCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccE
Confidence            999999999887543322     244557779999999643    45677665 57788888999999999998887765


Q ss_pred             EEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeec-------CCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 015490          255 FASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVV-------REPVSSFNVSADGKLLAVGTASGDISII  327 (406)
Q Consensus       255 ~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-------~~~i~~~~~sp~~~~l~~~~~dg~i~i~  327 (406)
                      ..--.|+.        ..+++++.|.+|++||++-..++.++...       ...|.+++..|.|++|++|-.|....+|
T Consensus       187 lalyswn~--------~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~ly  258 (350)
T KOG0641|consen  187 LALYSWNG--------AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLY  258 (350)
T ss_pred             EEEEEecC--------cEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEE
Confidence            54445543        26789999999999999988888776431       2578999999999999999999999999


Q ss_pred             ECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490          328 DSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIED  374 (406)
Q Consensus       328 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~  374 (406)
                      |++.++.+..+. .|...|.++.|+|...||++|+.|..|++-|+..
T Consensus       259 dirg~r~iq~f~-phsadir~vrfsp~a~yllt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  259 DIRGGRMIQRFH-PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             EeeCCceeeeeC-CCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence            999999999996 8999999999999999999999999999999853

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.5e-28  Score=211.02  Aligned_cols=253  Identities=22%  Similarity=0.277  Sum_probs=204.9

Q ss_pred             EecCCCCceEEEEccCCCe-EEEEecCCeEEEEEecccccceeecceeccceeee-cccccCcEEEEEECCCCCEEEEee
Q 015490          109 LRTDSDLPYRMAIHPHGDG-IICALQNSCRLFEWDEVENTEIRRLGVKISEKVLS-QLENVGQQLALTFDSEGTIFAAGS  186 (406)
Q Consensus       109 ~~~h~~~v~~~~~sp~~~~-l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~~~  186 (406)
                      .....+.|.+++|+|...+ ++++++-.+.||.-...              ...+ ..+....+.++.|-.||++||+|.
T Consensus        22 ~~ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~--------------~~~k~~srFk~~v~s~~fR~DG~LlaaGD   87 (487)
T KOG0310|consen   22 VHKEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTR--------------SVRKTFSRFKDVVYSVDFRSDGRLLAAGD   87 (487)
T ss_pred             cccccCcceeEecCCCCCCceEEecccEEEEEecchh--------------hhhhhHHhhccceeEEEeecCCeEEEccC
Confidence            3344578999999997764 55566777888765432              1112 122446789999999999999999


Q ss_pred             CCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCC-EEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCC
Q 015490          187 ENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGK-FLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNN  265 (406)
Q Consensus       187 ~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (406)
                      ..|.|+|||+.+...+..+..|..++..+.|+|++. .+++|++|+.+++||+.+......+.+ +...+.+.+|+|...
T Consensus        88 ~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~-htDYVR~g~~~~~~~  166 (487)
T KOG0310|consen   88 ESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSG-HTDYVRCGDISPAND  166 (487)
T ss_pred             CcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecC-CcceeEeeccccCCC
Confidence            999999999877667778888999999999999655 677788899999999998887545554 566799999999988


Q ss_pred             CceEEEEEEEcCCCcEEEEEeCCCc-eEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeeccccc
Q 015490          266 EDYVLYIAAITDRGASIVTWNTTTW-KRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLG  344 (406)
Q Consensus       266 ~~~~l~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  344 (406)
                      +     ++++|+.||.|++||+++. ..+.++ .|..+|.++.+-|.|..|++++ ...|++||+.+|.........|..
T Consensus       167 h-----ivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~K  239 (487)
T KOG0310|consen  167 H-----IVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNK  239 (487)
T ss_pred             e-----EEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccc
Confidence            7     7899999999999999987 455555 4778999999999999999987 457999999965544443335999


Q ss_pred             ceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCchH
Q 015490          345 IVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLNL  383 (406)
Q Consensus       345 ~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~  383 (406)
                      .|+|+.+..++..|++++-|+.|++||+.+-+.+..+.+
T Consensus       240 tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~  278 (487)
T KOG0310|consen  240 TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY  278 (487)
T ss_pred             eEEEEEeecCCceEeecccccceEEEEccceEEEEeeec
Confidence            999999999999999999999999999888877666554

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=4.5e-27  Score=185.19  Aligned_cols=265  Identities=14%  Similarity=0.168  Sum_probs=213.9

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVEN  146 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~  146 (406)
                      ++++.+++|..-          .+..|++..    ...+.++.+|...|..++.+.|+..+++++ |..+.+|+.+    
T Consensus        28 dGnY~ltcGsdr----------tvrLWNp~r----g~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~----   89 (307)
T KOG0316|consen   28 DGNYCLTCGSDR----------TVRLWNPLR----GALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN----   89 (307)
T ss_pred             CCCEEEEcCCCc----------eEEeecccc----cceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc----
Confidence            788888775422          566777755    348899999999999999999999998876 7776666554    


Q ss_pred             cceeecceeccceeeeccccc-CcEEEEEECCCCCEEEEeeCCCeEEEEeCCC--cceEeeeeccCCceeEEEEccCCCE
Q 015490          147 TEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIFAAGSENGNLRVFKWPS--LEIILNESEAHASVKDLSFSPDGKF  223 (406)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~i~~~~~s~~~~~  223 (406)
                                +++..+.+++| +.|+.++|+.+...+++|+.|.++++||.+.  .++++.+....+.|.++..+  +..
T Consensus        90 ----------TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~he  157 (307)
T KOG0316|consen   90 ----------TGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHE  157 (307)
T ss_pred             ----------cCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccE
Confidence                      44445555566 8899999999999999999999999999864  45677777777789999885  567


Q ss_pred             EEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCe
Q 015490          224 LVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPV  303 (406)
Q Consensus       224 l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i  303 (406)
                      |++|+.||+++.||++.|+......   +.+|+++.|+++++      +...+.-++++++.|-.+++.+..+++|...-
T Consensus       158 IvaGS~DGtvRtydiR~G~l~sDy~---g~pit~vs~s~d~n------c~La~~l~stlrLlDk~tGklL~sYkGhkn~e  228 (307)
T KOG0316|consen  158 IVAGSVDGTVRTYDIRKGTLSSDYF---GHPITSVSFSKDGN------CSLASSLDSTLRLLDKETGKLLKSYKGHKNME  228 (307)
T ss_pred             EEeeccCCcEEEEEeecceeehhhc---CCcceeEEecCCCC------EEEEeeccceeeecccchhHHHHHhcccccce
Confidence            9999999999999999998776554   45799999999998      45566789999999999999999999987543


Q ss_pred             E--EEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccc-eEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490          304 S--SFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGI-VTALAFSYDSRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       304 ~--~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-v~~~~~sp~~~~l~s~s~dg~i~iw~~~  373 (406)
                      .  ..+++.....+++|++||.|++||+.....+..+. .+... |.++.++|.-..|+++. ++.+..|.-+
T Consensus       229 ykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~-~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~~~  299 (307)
T KOG0316|consen  229 YKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLS-VVSTVIVTDLSCHPTMDDFITAT-GHGDLFWYQE  299 (307)
T ss_pred             eeeeeeecccceeEEeccCCceEEEEEeccceeeeeec-cCCceeEEeeecccCccceeEec-CCceeceeeh
Confidence            3  45566677899999999999999999999998886 56655 78999999876677764 4556677543

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=2.8e-26  Score=179.79  Aligned_cols=252  Identities=14%  Similarity=0.158  Sum_probs=205.8

Q ss_pred             eeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCC----CC
Q 015490          106 VAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSE----GT  180 (406)
Q Consensus       106 ~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----g~  180 (406)
                      ..+-+.|.+.|+|.+|+|+|..+++|+ |..+++..++..+.+.        ....+....|.+.|..++|-.+    |.
T Consensus        82 ~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~--------~g~dle~nmhdgtirdl~fld~~~s~~~  153 (350)
T KOG0641|consen   82 CKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNA--------TGHDLEFNMHDGTIRDLAFLDDPESGGA  153 (350)
T ss_pred             eeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccc--------cCcceeeeecCCceeeeEEecCCCcCce
Confidence            345568999999999999999999998 8899988877655432        1222222335688999999643    46


Q ss_pred             EEEEee-CCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccC------Ccc
Q 015490          181 IFAAGS-ENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKE------NDE  253 (406)
Q Consensus       181 ~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~------~~~  253 (406)
                      +|++++ .|..|++-|..+|+....+.+|.+.|.++- +-++-++++|+.|.+|++||++-..++..+...      ...
T Consensus       154 il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gless  232 (350)
T KOG0641|consen  154 ILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESS  232 (350)
T ss_pred             EEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccc
Confidence            777764 477888889999999999999999777652 335789999999999999999988888776432      235


Q ss_pred             eEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCc-
Q 015490          254 LFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSL-  332 (406)
Q Consensus       254 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~-  332 (406)
                      .+.+++..|.++      +++++..|....+||++.++.+..+..|...|.++.|+|...|+++++.|..|++-|++.. 
T Consensus       233 avaav~vdpsgr------ll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdl  306 (350)
T KOG0641|consen  233 AVAAVAVDPSGR------LLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDL  306 (350)
T ss_pred             eeEEEEECCCcc------eeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccch
Confidence            688999999998      6788999999999999999999999999999999999999999999999999999998742 


Q ss_pred             --e-EEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490          333 --Q-VRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       333 --~-~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~  373 (406)
                        + ++... ..|...+..+.|+|+.-.+++.+.|.++.+|-+.
T Consensus       307 a~el~~~vv-~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  307 AHELPIMVV-AEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             hhcCceEEE-EeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence              1 22222 3689999999999999889999999999999764

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=3.6e-28  Score=211.19  Aligned_cols=267  Identities=15%  Similarity=0.237  Sum_probs=200.8

Q ss_pred             ccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccc--cCcEEEEEECC
Q 015490          101 LSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLEN--VGQQLALTFDS  177 (406)
Q Consensus       101 ~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~  177 (406)
                      ++...-..+.+|+..|.++++.|.|..+++|+ |.++++|++......          .+.++.+..  ...|+++.|++
T Consensus       155 IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas----------~~~fr~l~P~E~h~i~sl~ys~  224 (641)
T KOG0772|consen  155 IPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS----------MRSFRQLQPCETHQINSLQYSV  224 (641)
T ss_pred             CCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEeccccccc----------chhhhccCcccccccceeeecC
Confidence            34456678999999999999999999999998 999999998765432          112222222  25789999999


Q ss_pred             CCCEEEEeeCCCeEEEEeCCCcceE------------eeeeccCCceeEEEEccCCC-EEEEEeCCCCEEEEEcCCCeee
Q 015490          178 EGTIFAAGSENGNLRVFKWPSLEII------------LNESEAHASVKDLSFSPDGK-FLVSLGNRGPGRVWDLASSAVA  244 (406)
Q Consensus       178 ~g~~l~~~~~dg~i~vwd~~~~~~~------------~~~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~iwd~~~~~~~  244 (406)
                      .|..|++.+.....+|+|-...+..            ....+|...++|.+|+|+.+ .+++++.||++++||+...+..
T Consensus       225 Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q  304 (641)
T KOG0772|consen  225 TGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ  304 (641)
T ss_pred             CCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh
Confidence            9998888888889999995433222            22356666899999999765 7999999999999999765432


Q ss_pred             e-ec----ccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceE---EEEeeecCC--CeEEEEEcCCCCE
Q 015490          245 T-PL----AKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKR---IRTKQVVRE--PVSSFNVSADGKL  314 (406)
Q Consensus       245 ~-~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~--~i~~~~~sp~~~~  314 (406)
                      . .+    .....-.++.|+|+++++      .++.+..||.|.+|+..+...   ...-..|..  .|+|+.||+||++
T Consensus       305 ~qVik~k~~~g~Rv~~tsC~~nrdg~------~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~  378 (641)
T KOG0772|consen  305 LQVIKTKPAGGKRVPVTSCAWNRDGK------LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNY  378 (641)
T ss_pred             eeEEeeccCCCcccCceeeecCCCcc------hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccch
Confidence            2 22    223445688999999998      367788999999999865432   233345554  8999999999999


Q ss_pred             EEEEeCCCcEEEEECCCceE-EEEeec-ccccceEEEEEcCCCCeEEEEE------CCCcEEEEEecCCcCCCCchH
Q 015490          315 LAVGTASGDISIIDSSSLQV-RTAVKK-AHLGIVTALAFSYDSRALVSAS------MDSSVRVTVIEDKKKSGGLNL  383 (406)
Q Consensus       315 l~~~~~dg~i~i~d~~~~~~-~~~~~~-~~~~~v~~~~~sp~~~~l~s~s------~dg~i~iw~~~~~~~~~~~~~  383 (406)
                      |++-+.|+++++||++..+. +..... ....+-+.++|||+.+++++|+      ..|++.+||-.+-+.+.++.+
T Consensus       379 LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i  455 (641)
T KOG0772|consen  379 LLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI  455 (641)
T ss_pred             hhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC
Confidence            99999999999999987543 333321 1223467899999999999986      346799999888777665543

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.5e-27  Score=194.16  Aligned_cols=249  Identities=22%  Similarity=0.293  Sum_probs=203.0

Q ss_pred             cccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCC
Q 015490          102 SDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGT  180 (406)
Q Consensus       102 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  180 (406)
                      ...++..+..|.+++++++.  ++.++++|+ |.+++||+.....             +.-..+.|.+.|+++.|.+.-.
T Consensus        32 ~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~-------------qlg~ll~HagsitaL~F~~~~S   96 (362)
T KOG0294|consen   32 TLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRK-------------QLGILLSHAGSITALKFYPPLS   96 (362)
T ss_pred             eeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchh-------------hhcceeccccceEEEEecCCcc
Confidence            34567889999999999999  579999997 8999998876421             1112234668999999998764


Q ss_pred             --EEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEE
Q 015490          181 --IFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASC  258 (406)
Q Consensus       181 --~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  258 (406)
                        .|++|+.||.|.+|+.....++..+..|...|+.++.+|.+++-++.+.|+.+++||+-.|+.-..+...+.  .+.+
T Consensus        97 ~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~--at~v  174 (362)
T KOG0294|consen   97 KSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK--ATLV  174 (362)
T ss_pred             hhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCc--ceee
Confidence              899999999999999999999999999999999999999999999999999999999999887766655444  3459


Q ss_pred             EEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEe
Q 015490          259 RFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAV  338 (406)
Q Consensus       259 ~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~  338 (406)
                      .|+|.|.+    |++.   ....|-+|.+.+-+....+... ..+.++.|- ++..|++|..|+.|.+||.++..+...+
T Consensus       175 ~w~~~Gd~----F~v~---~~~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~  245 (362)
T KOG0294|consen  175 SWSPQGDH----FVVS---GRNKIDIYQLDNASVFREIENP-KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEF  245 (362)
T ss_pred             EEcCCCCE----EEEE---eccEEEEEecccHhHhhhhhcc-ccceeeeec-CCceEEEecCCceEEEeccCCCccceee
Confidence            99999986    3332   2567889988876665555543 345666665 5668999999999999999998888888


Q ss_pred             ecccccceEEEEE--cCCCCeEEEEECCCcEEEEEecCCcC
Q 015490          339 KKAHLGIVTALAF--SYDSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       339 ~~~~~~~v~~~~~--sp~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      . +|...|.++.+  .|++.+|+|+|.||.|+|||++...+
T Consensus       246 ~-AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k  285 (362)
T KOG0294|consen  246 L-AHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETK  285 (362)
T ss_pred             e-cchhheeeeEEEecCCceEEEEeccCceEEEEEcccccc
Confidence            6 99999999984  45788999999999999999987743

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=2e-28  Score=201.47  Aligned_cols=260  Identities=14%  Similarity=0.180  Sum_probs=212.9

Q ss_pred             cCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCC
Q 015490          111 TDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENG  189 (406)
Q Consensus       111 ~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  189 (406)
                      +....+.|..|+|||.+|++|+ |+-+.+|++-.  ++..+.+......   ...-+...|.|+.||.|...+|+|+.||
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~--GKlrKDLkYQAqd---~fMMmd~aVlci~FSRDsEMlAsGsqDG  285 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTT--GKLRKDLKYQAQD---NFMMMDDAVLCISFSRDSEMLASGSQDG  285 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhcc--chhhhhhhhhhhc---ceeecccceEEEeecccHHHhhccCcCC
Confidence            3456688999999999999998 99999987754  3332222111011   1122457899999999999999999999


Q ss_pred             eEEEEeCCCcceEeeee-ccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCce
Q 015490          190 NLRVFKWPSLEIILNES-EAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDY  268 (406)
Q Consensus       190 ~i~vwd~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (406)
                      .|++|.+++|.+++.+. .|...|+++.|+.|+..+++++.|.++++.-+++|++++.+.+| ...++...|.++|.+  
T Consensus       286 kIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGH-sSyvn~a~ft~dG~~--  362 (508)
T KOG0275|consen  286 KIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGH-SSYVNEATFTDDGHH--  362 (508)
T ss_pred             cEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCc-cccccceEEcCCCCe--
Confidence            99999999999999987 45569999999999999999999999999999999999999876 556889999999986  


Q ss_pred             EEEEEEEcCCCcEEEEEeCCCceEEEEeeec--CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCceEEEEeecc--cc
Q 015490          269 VLYIAAITDRGASIVTWNTTTWKRIRTKQVV--REPVSSFNVSA-DGKLLAVGTASGDISIIDSSSLQVRTAVKKA--HL  343 (406)
Q Consensus       269 ~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~i~~~~~sp-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~  343 (406)
                          +.+++.||+|++|+..+.+++.+++..  ..+|.++-.-| +...++++...++|+|.++. |+.++.+..+  ..
T Consensus       363 ----iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREg  437 (508)
T KOG0275|consen  363 ----IISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREG  437 (508)
T ss_pred             ----EEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccC
Confidence                455678999999999999999888754  35677777777 44678888889999999986 7888887643  23


Q ss_pred             cceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCchH
Q 015490          344 GIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLNL  383 (406)
Q Consensus       344 ~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~  383 (406)
                      +...+++.||.|.++.+.+.|+.++-+.+.+|+....+++
T Consensus       438 GdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V  477 (508)
T KOG0275|consen  438 GDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV  477 (508)
T ss_pred             CceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec
Confidence            4566788999999999999999999999999887665554

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=2.5e-26  Score=184.58  Aligned_cols=200  Identities=19%  Similarity=0.256  Sum_probs=172.0

Q ss_pred             ccCcEEEEEECCC-CCEEEEeeCCCeEEEEeCCC---cceEeeee-ccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCC
Q 015490          166 NVGQQLALTFDSE-GTIFAAGSENGNLRVFKWPS---LEIILNES-EAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLAS  240 (406)
Q Consensus       166 ~~~~v~~~~~s~~-g~~l~~~~~dg~i~vwd~~~---~~~~~~~~-~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~  240 (406)
                      |.+.+..++|+|- |..||+++.|..|++|+...   ..+...+. +|...|++++|+|.|++|+++|.|.++.||.-..
T Consensus        13 h~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~   92 (312)
T KOG0645|consen   13 HKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKED   92 (312)
T ss_pred             CCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCC
Confidence            3367999999998 89999999999999999874   33443343 3555999999999999999999999999998765


Q ss_pred             C--eeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC---ceEEEEeeecCCCeEEEEEcCCCCEE
Q 015490          241 S--AVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT---WKRIRTKQVVREPVSSFNVSADGKLL  315 (406)
Q Consensus       241 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~---~~~~~~~~~~~~~i~~~~~sp~~~~l  315 (406)
                      +  +++..+.+| ...+.+++|+++|+      ++++++.|..|.+|....   ..+...++.|...|-.+.|+|...+|
T Consensus        93 ~efecv~~lEGH-EnEVK~Vaws~sG~------~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL  165 (312)
T KOG0645|consen   93 GEFECVATLEGH-ENEVKCVAWSASGN------YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL  165 (312)
T ss_pred             CceeEEeeeecc-ccceeEEEEcCCCC------EEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence            4  566677765 45689999999998      478889999999999874   35678889999999999999999999


Q ss_pred             EEEeCCCcEEEEECC---CceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490          316 AVGTASGDISIIDSS---SLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       316 ~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~  373 (406)
                      ++++.|++|++|+-.   ...+..++. +|...|.+++|++.|..|++++.|++|+||...
T Consensus       166 ~S~SYDnTIk~~~~~~dddW~c~~tl~-g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~  225 (312)
T KOG0645|consen  166 FSCSYDNTIKVYRDEDDDDWECVQTLD-GHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY  225 (312)
T ss_pred             EEeccCCeEEEEeecCCCCeeEEEEec-CccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence            999999999999865   456788885 899999999999999999999999999999954

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=7.5e-28  Score=203.83  Aligned_cols=255  Identities=16%  Similarity=0.153  Sum_probs=208.7

Q ss_pred             cEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccc
Q 015490           88 AVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLEN  166 (406)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (406)
                      .+.+|....+.    ...+.++.|..+.|+++.|.+++.++++++ |+.+++|+.+              ......++.+
T Consensus       198 ~Ik~W~v~~~k----~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd--------------~~r~~~TLsG  259 (459)
T KOG0288|consen  198 IIKLWNVLGEK----SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD--------------SLRLRHTLSG  259 (459)
T ss_pred             hhhhhhcccch----hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeecc--------------chhhhhhhcc
Confidence            34444444443    356778889999999999999999888876 9999998877              3334444555


Q ss_pred             c-CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeee
Q 015490          167 V-GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT  245 (406)
Q Consensus       167 ~-~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~  245 (406)
                      | +.|+++.|......+++|+.|.+|++||+....+...+... ..+.+|..+  ...++++-.|++|++||.++..+..
T Consensus       260 HtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~-S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~  336 (459)
T KOG0288|consen  260 HTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG-SQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTR  336 (459)
T ss_pred             cccceeeehhhccccceeeccccchhhhhhhhhhheecccccc-ccccceEec--ceeeeecccccceEEEeccCCceee
Confidence            5 88999999987777999999999999999998887665443 346667665  4568888899999999999999988


Q ss_pred             ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC----CCeEEEEEcCCCCEEEEEeCC
Q 015490          246 PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR----EPVSSFNVSADGKLLAVGTAS  321 (406)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~----~~i~~~~~sp~~~~l~~~~~d  321 (406)
                      ..+.+.  .++++..++++..     + .+.+.|..+.+.|+++......+....    ...+.+.|||++.|+++|+.|
T Consensus       337 sv~~gg--~vtSl~ls~~g~~-----l-LsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~d  408 (459)
T KOG0288|consen  337 SVPLGG--RVTSLDLSMDGLE-----L-LSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSAD  408 (459)
T ss_pred             EeecCc--ceeeEeeccCCeE-----E-eeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCC
Confidence            887553  6999999999986     3 344789999999999988877776542    457899999999999999999


Q ss_pred             CcEEEEECCCceEEEEeeccccc-ceEEEEEcCCCCeEEEEECCCcEEEEE
Q 015490          322 GDISIIDSSSLQVRTAVKKAHLG-IVTALAFSYDSRALVSASMDSSVRVTV  371 (406)
Q Consensus       322 g~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~s~s~dg~i~iw~  371 (406)
                      |.|+||++.++++...+...+.. .|++++|+|.|..|++++.++.+.+|.
T Consensus       409 gsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  409 GSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             CcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            99999999999999888754544 699999999999999999999999993

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=8.5e-27  Score=200.13  Aligned_cols=260  Identities=17%  Similarity=0.216  Sum_probs=210.6

Q ss_pred             eeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeeccee-----ccceeeecc--cccCcEEEEEECC
Q 015490          106 VAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVK-----ISEKVLSQL--ENVGQQLALTFDS  177 (406)
Q Consensus       106 ~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~--~~~~~v~~~~~s~  177 (406)
                      ...+..|..+|.+++++|++.+.++++ ++  .|-.|+..++...+.+.-.     ......+.-  .|...+.+++.|+
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g--~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~  212 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDG--TILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS  212 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCc--ceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC
Confidence            677889999999999999999999887 55  4555665555533221111     011222222  3457899999999


Q ss_pred             CCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEE
Q 015490          178 EGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFAS  257 (406)
Q Consensus       178 ~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  257 (406)
                      ||++||+|+.|..|.||+.++.+.+..+.+|.+.|.+++|-.....+++++.|+++++|++.....+.++.+|++ .|..
T Consensus       213 Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd-~v~~  291 (479)
T KOG0299|consen  213 DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQD-GVLG  291 (479)
T ss_pred             CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcc-ceee
Confidence            999999999999999999999999999999999999999988888899999999999999998888888877655 4556


Q ss_pred             EEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEE
Q 015490          258 CRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTA  337 (406)
Q Consensus       258 ~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~  337 (406)
                      +.-...++      ++..++.|+++++|++.. .....+.++.+.+.|++|-.+ ..+++|+.+|.|.+|++.+.+++.+
T Consensus       292 IdaL~reR------~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~  363 (479)
T KOG0299|consen  292 IDALSRER------CVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFT  363 (479)
T ss_pred             echhcccc------eEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeE
Confidence            76666665      567778999999999954 344556777888999999755 5788999999999999999998887


Q ss_pred             eecccc-----------cceEEEEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490          338 VKKAHL-----------GIVTALAFSYDSRALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       338 ~~~~~~-----------~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~  376 (406)
                      ....|.           .+|++++..|...++++|+.+|.|++|.++++-
T Consensus       364 ~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~  413 (479)
T KOG0299|consen  364 SRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGL  413 (479)
T ss_pred             eeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCc
Confidence            764442           278999999999999999999999999999883

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=3.1e-28  Score=206.14  Aligned_cols=256  Identities=18%  Similarity=0.191  Sum_probs=214.0

Q ss_pred             cccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCC
Q 015490          102 SDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEG  179 (406)
Q Consensus       102 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g  179 (406)
                      +......+..|.+.|..+.|-++...|++++ |..+++|+......            ....++.+. ++++.+.|.+++
T Consensus       164 pS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~------------~~~~tLaGs~g~it~~d~d~~~  231 (459)
T KOG0288|consen  164 PSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS------------ELISTLAGSLGNITSIDFDSDN  231 (459)
T ss_pred             chhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchh------------hhhhhhhccCCCcceeeecCCC
Confidence            3456677889999999999999988899987 99999988775432            233344444 789999999999


Q ss_pred             CEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEE
Q 015490          180 TIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCR  259 (406)
Q Consensus       180 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  259 (406)
                      +.+++++.|+.+++|++...+...++.+|.+.|+++.|......+++++.|.+|++||+....+.+++....  .+..+.
T Consensus       232 ~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S--~cnDI~  309 (459)
T KOG0288|consen  232 KHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGS--QCNDIV  309 (459)
T ss_pred             ceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccc--cccceE
Confidence            999999999999999999999999999999999999998877779999999999999999988887665332  233444


Q ss_pred             EEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEee
Q 015490          260 FSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVK  339 (406)
Q Consensus       260 ~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  339 (406)
                      .++        ....++..|++|++||.++..+......+ +.|+++..+++|..|.+++.|.++.+.|+++.+....+.
T Consensus       310 ~~~--------~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~s  380 (459)
T KOG0288|consen  310 CSI--------SDVISGHFDKKVRFWDIRSADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFS  380 (459)
T ss_pred             ecc--------eeeeecccccceEEEeccCCceeeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEee
Confidence            442        14577888999999999999999988877 489999999999999999999999999999988877764


Q ss_pred             c---ccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCC
Q 015490          340 K---AHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGG  380 (406)
Q Consensus       340 ~---~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~  380 (406)
                      .   -.....+.+.|||++.|+++||.||.|+||++.+++....
T Consensus       381 A~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~  424 (459)
T KOG0288|consen  381 AEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKV  424 (459)
T ss_pred             ccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEE
Confidence            1   0122378999999999999999999999999999886443

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=5.9e-27  Score=203.71  Aligned_cols=275  Identities=16%  Similarity=0.219  Sum_probs=194.4

Q ss_pred             cCccEEEEEEecCCCCccccceeEEe-cCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeee
Q 015490           85 IRNAVLLSHFDFASNSLSDQPVAELR-TDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLS  162 (406)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  162 (406)
                      +.+.+.+|.+..  ..-+.+..+.+. .....|.+++|++.|..|++.+ ....+|++-+...  ......   ..+.+.
T Consensus       187 ~Dy~v~~wDf~g--Mdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~--~~e~~K---GDQYI~  259 (641)
T KOG0772|consen  187 LDYTVKFWDFQG--MDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFE--IVEFSK---GDQYIR  259 (641)
T ss_pred             ccceEEEEeccc--ccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCce--eeeeec---cchhhh
Confidence            344445544443  322223333333 2346789999999999877765 6666776544321  111111   111111


Q ss_pred             ----cccccCcEEEEEECCCC-CEEEEeeCCCeEEEEeCCCcceEeeeecc------CCceeEEEEccCCCEEEEEeCCC
Q 015490          163 ----QLENVGQQLALTFDSEG-TIFAAGSENGNLRVFKWPSLEIILNESEA------HASVKDLSFSPDGKFLVSLGNRG  231 (406)
Q Consensus       163 ----~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------~~~i~~~~~s~~~~~l~s~s~d~  231 (406)
                          +-.|...++|.+|+|+. ..|++++.||++++||+++.+....+..+      .-.++.++|++||+.||+|..||
T Consensus       260 Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DG  339 (641)
T KOG0772|consen  260 DMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDG  339 (641)
T ss_pred             hhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCC
Confidence                12233779999999965 67889999999999999765533222221      12789999999999999999999


Q ss_pred             CEEEEEcCCCe--eeeecccCCc--ceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCce-EEEEeeec--CCCeE
Q 015490          232 PGRVWDLASSA--VATPLAKEND--ELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK-RIRTKQVV--REPVS  304 (406)
Q Consensus       232 ~i~iwd~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~--~~~i~  304 (406)
                      .|.+|+..+..  +...+...|.  ..++++.|+++|+.      +++.+.|+.+++||++..+ ++....+-  ..+-+
T Consensus       340 SIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~------LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~t  413 (641)
T KOG0772|consen  340 SIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNY------LLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGT  413 (641)
T ss_pred             ceeeeecCCcccccceEeeeccCCCCceeEEEeccccch------hhhccCCCceeeeeccccccchhhhcCCCccCCCC
Confidence            99999985532  2223333333  36999999999994      6778899999999998765 34443332  24557


Q ss_pred             EEEEcCCCCEEEEEeC------CCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490          305 SFNVSADGKLLAVGTA------SGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       305 ~~~~sp~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~  373 (406)
                      .++|||+.++|++|+.      .|.+.+||..+...+..+. .....|..+.|+|.-+.++.|+.||++++|-=.
T Consensus       414 dc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~-i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp  487 (641)
T KOG0772|consen  414 DCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKID-ISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDP  487 (641)
T ss_pred             ccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEec-CCCceEEEEeecchhhheeeecCCCceEEEECc
Confidence            8999999999999865      4679999999999999886 567789999999988889999999999998543

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=1.6e-25  Score=208.82  Aligned_cols=240  Identities=10%  Similarity=0.129  Sum_probs=172.8

Q ss_pred             cceeEEecCCCCceEEEEccC-CCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCC
Q 015490          104 QPVAELRTDSDLPYRMAIHPH-GDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGT  180 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~-~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~  180 (406)
                      .++..+.+|.+.|.+++|+|+ +..|++++ |+.++||++..... ....     ....+..+. |...|.+++|+|++.
T Consensus        65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~-~~~~-----i~~p~~~L~gH~~~V~sVaf~P~g~  138 (568)
T PTZ00420         65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDE-SVKE-----IKDPQCILKGHKKKISIIDWNPMNY  138 (568)
T ss_pred             ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCc-cccc-----cccceEEeecCCCcEEEEEECCCCC
Confidence            467889999999999999997 67888887 89999987753211 0000     011122233 447899999999987


Q ss_pred             E-EEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceE----
Q 015490          181 I-FAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELF----  255 (406)
Q Consensus       181 ~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~----  255 (406)
                      . |++++.|++|++||+++++....+. +...|.+++|+|+|++|++++.|+.|+|||+++++.+..+..|.+...    
T Consensus       139 ~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v  217 (568)
T PTZ00420        139 YIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNI  217 (568)
T ss_pred             eEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEE
Confidence            5 5789999999999999988776654 556899999999999999999999999999999999888877654322    


Q ss_pred             EEEEEEcCCCCceEEEEEEEcCCC---cEEEEEeCCC-ceEEEEeeecC--CCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 015490          256 ASCRFSPLNNEDYVLYIAAITDRG---ASIVTWNTTT-WKRIRTKQVVR--EPVSSFNVSADGKLLAVGTASGDISIIDS  329 (406)
Q Consensus       256 ~~~~~~~~~~~~~~l~~~~~~~~~---~~i~~~d~~~-~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~  329 (406)
                      ....|++++..     +++++..+   +.|++||+++ .+++.....+.  +.+......++|.++++|+.|+.|++|++
T Consensus       218 ~~~~fs~d~~~-----IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~  292 (568)
T PTZ00420        218 WIDGLGGDDNY-----ILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQH  292 (568)
T ss_pred             EeeeEcCCCCE-----EEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEc
Confidence            22334577663     33333332   5899999985 45555544332  33333334556889999999999999999


Q ss_pred             CCceEEEEeecccccceEEEEEcCCC
Q 015490          330 SSLQVRTAVKKAHLGIVTALAFSYDS  355 (406)
Q Consensus       330 ~~~~~~~~~~~~~~~~v~~~~~sp~~  355 (406)
                      ..+.....-...+..+..+++|.|..
T Consensus       293 ~~~~~~~l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        293 SLGSIRKVNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             cCCcEEeecccccCCCccceEEcccc
Confidence            87643222111356778899999963

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.96  E-value=2e-26  Score=197.80  Aligned_cols=257  Identities=14%  Similarity=0.210  Sum_probs=195.0

Q ss_pred             EEecCCCCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCC-CEEEE
Q 015490          108 ELRTDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEG-TIFAA  184 (406)
Q Consensus       108 ~~~~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~  184 (406)
                      ..-.|.+.|+.+...|....++++.  ++.+.||++..........-..   ...++-..|+..-..++|++.. -.|++
T Consensus       119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~---~Pdl~L~gH~~eg~glsWn~~~~g~Lls  195 (422)
T KOG0264|consen  119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGEC---RPDLRLKGHEKEGYGLSWNRQQEGTLLS  195 (422)
T ss_pred             EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccC---CCceEEEeecccccccccccccceeEee
Confidence            3356999999999999999888865  6677777665433222110011   1111222233447789999854 57889


Q ss_pred             eeCCCeEEEEeCCCcc-------eEeeeeccCCceeEEEEccC-CCEEEEEeCCCCEEEEEcCC--CeeeeecccCCcce
Q 015490          185 GSENGNLRVFKWPSLE-------IILNESEAHASVKDLSFSPD-GKFLVSLGNRGPGRVWDLAS--SAVATPLAKENDEL  254 (406)
Q Consensus       185 ~~~dg~i~vwd~~~~~-------~~~~~~~~~~~i~~~~~s~~-~~~l~s~s~d~~i~iwd~~~--~~~~~~~~~~~~~~  254 (406)
                      ++.|++|++||+....       ....+.+|...|.+++|++- ...|++++.|+.+.|||+++  .+...... .+...
T Consensus       196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~-ah~~~  274 (422)
T KOG0264|consen  196 GSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK-AHSAE  274 (422)
T ss_pred             ccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc-ccCCc
Confidence            9999999999996432       23456678889999999984 45788999999999999995  33333333 45667


Q ss_pred             EEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCce-EEEEeeecCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCc
Q 015490          255 FASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK-RIRTKQVVREPVSSFNVSAD-GKLLAVGTASGDISIIDSSSL  332 (406)
Q Consensus       255 ~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~i~~~~~sp~-~~~l~~~~~dg~i~i~d~~~~  332 (406)
                      +.|++|+|.+..     ++|+++.|++|.+||+|+.+ ++.++..|...|.++.|||. ...||+++.|+.+.+||+..-
T Consensus       275 vn~~~fnp~~~~-----ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~i  349 (422)
T KOG0264|consen  275 VNCVAFNPFNEF-----ILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRI  349 (422)
T ss_pred             eeEEEeCCCCCc-----eEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccc
Confidence            999999999985     88999999999999998754 68889999999999999995 468888899999999999642


Q ss_pred             eEE-------------EEeecccccceEEEEEcCCCCe-EEEEECCCcEEEEEec
Q 015490          333 QVR-------------TAVKKAHLGIVTALAFSYDSRA-LVSASMDSSVRVTVIE  373 (406)
Q Consensus       333 ~~~-------------~~~~~~~~~~v~~~~~sp~~~~-l~s~s~dg~i~iw~~~  373 (406)
                      ...             .-...||...|..+.|+|+..+ ++|++.|+.+.||+..
T Consensus       350 g~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  350 GEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             ccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            211             1223589999999999998655 6788999999999987

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=9.1e-26  Score=210.36  Aligned_cols=202  Identities=13%  Similarity=0.119  Sum_probs=158.7

Q ss_pred             ccCcEEEEEECCC-CCEEEEeeCCCeEEEEeCCCcc--------eEeeeeccCCceeEEEEccCCCE-EEEEeCCCCEEE
Q 015490          166 NVGQQLALTFDSE-GTIFAAGSENGNLRVFKWPSLE--------IILNESEAHASVKDLSFSPDGKF-LVSLGNRGPGRV  235 (406)
Q Consensus       166 ~~~~v~~~~~s~~-g~~l~~~~~dg~i~vwd~~~~~--------~~~~~~~~~~~i~~~~~s~~~~~-l~s~s~d~~i~i  235 (406)
                      |.+.|.+++|+|+ +.+|++|+.|++|++||+.++.        ....+.+|...|.+++|+|++.. |++++.|++|++
T Consensus        73 H~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrI  152 (568)
T PTZ00420         73 HTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNI  152 (568)
T ss_pred             CCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEE
Confidence            4478999999996 7899999999999999997642        23345677779999999999875 568899999999


Q ss_pred             EEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEE-----EEEcC
Q 015490          236 WDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSS-----FNVSA  310 (406)
Q Consensus       236 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~-----~~~sp  310 (406)
                      ||+++++....+.  +...+.+++|+|++..      +++++.|+.|++||+++++.+.++.+|.+.+.+     ..|++
T Consensus       153 WDl~tg~~~~~i~--~~~~V~SlswspdG~l------Lat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~  224 (568)
T PTZ00420        153 WDIENEKRAFQIN--MPKKLSSLKWNIKGNL------LSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGG  224 (568)
T ss_pred             EECCCCcEEEEEe--cCCcEEEEEECCCCCE------EEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcC
Confidence            9999988776664  2356899999999983      455678999999999999999999988765433     33568


Q ss_pred             CCCEEEEEeCCC----cEEEEECCC-ceEEEEee-cccccceEEEEEcCCCCeEEEEECCCcEEEEEecCC
Q 015490          311 DGKLLAVGTASG----DISIIDSSS-LQVRTAVK-KAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDK  375 (406)
Q Consensus       311 ~~~~l~~~~~dg----~i~i~d~~~-~~~~~~~~-~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~  375 (406)
                      ++.+|++++.|+    .|+|||+++ .+++..+. ..+.+.+......++|.++++|+.|++|++|++..+
T Consensus       225 d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        225 DDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG  295 (568)
T ss_pred             CCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence            999999887764    799999985 55555543 122333333444556889999999999999999765

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=5.8e-27  Score=220.81  Aligned_cols=260  Identities=17%  Similarity=0.273  Sum_probs=207.4

Q ss_pred             cCCCCceEEEEccCCCeEEEEe---cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeC
Q 015490          111 TDSDLPYRMAIHPHGDGIICAL---QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE  187 (406)
Q Consensus       111 ~h~~~v~~~~~sp~~~~l~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  187 (406)
                      .++..|.+++.+|+|..+++|+   |+.++||..+.-..+.. ...........+...|.+.|+|+.|+|||++||+|++
T Consensus        11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~-~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD   89 (942)
T KOG0973|consen   11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKE-EKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD   89 (942)
T ss_pred             cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhh-hhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence            4456789999999999999987   77778887654321110 0000002222333445689999999999999999999


Q ss_pred             CCeEEEEeCCC------------------cceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeeccc
Q 015490          188 NGNLRVFKWPS------------------LEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAK  249 (406)
Q Consensus       188 dg~i~vwd~~~------------------~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  249 (406)
                      |+.|.||....                  .+....+.+|...|.+++|+|++.+|++++.|++|.|||.++.+.+..+..
T Consensus        90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~  169 (942)
T KOG0973|consen   90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRG  169 (942)
T ss_pred             cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeec
Confidence            99999998752                  225667788888999999999999999999999999999999988888887


Q ss_pred             CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeec------CCCeEEEEEcCCCCEEEEEeC---
Q 015490          250 ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVV------REPVSSFNVSADGKLLAVGTA---  320 (406)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~------~~~i~~~~~sp~~~~l~~~~~---  320 (406)
                      |+ ..|..+.|.|-|++      +++-++|++|++|++.++...+.+..+      ...+..+.|||||++|++...   
T Consensus       170 H~-s~VKGvs~DP~Gky------~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~  242 (942)
T KOG0973|consen  170 HQ-SLVKGVSWDPIGKY------FASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNG  242 (942)
T ss_pred             cc-ccccceEECCccCe------eeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccC
Confidence            65 45789999999994      677789999999998887777776554      235789999999999998754   


Q ss_pred             -CCcEEEEECCCceEEEEeecccccceEEEEEcCC-----CC------------eEEEEECCCcEEEEEecCCcCCC
Q 015490          321 -SGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYD-----SR------------ALVSASMDSSVRVTVIEDKKKSG  379 (406)
Q Consensus       321 -dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~-----~~------------~l~s~s~dg~i~iw~~~~~~~~~  379 (406)
                       -..+.|.+..+.+.-..+. +|.+++.++.|+|.     ..            .+|+||.|++|.||.....+++-
T Consensus       243 ~~~~~~IieR~tWk~~~~Lv-GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~  318 (942)
T KOG0973|consen  243 GKSTIAIIERGTWKVDKDLV-GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF  318 (942)
T ss_pred             CcceeEEEecCCceeeeeee-cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence             3468999998888888886 99999999999982     11            57899999999999998887743

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=1.8e-26  Score=196.72  Aligned_cols=248  Identities=20%  Similarity=0.271  Sum_probs=209.0

Q ss_pred             cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEE
Q 015490          104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIF  182 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  182 (406)
                      +.+..+.||+..|+.+.++|+...+++++ +..++||......             .......|..+|+.+..+|.|.||
T Consensus       252 q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-------------~~~~~~~h~~~V~~ls~h~tgeYl  318 (506)
T KOG0289|consen  252 QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-------------EPTSSRPHEEPVTGLSLHPTGEYL  318 (506)
T ss_pred             hhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc-------------CccccccccccceeeeeccCCcEE
Confidence            47889999999999999999999888876 7777887655422             122223366899999999999999


Q ss_pred             EEeeCCCeEEEEeCCCcceEeeeeccCC--ceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEE
Q 015490          183 AAGSENGNLRVFKWPSLEIILNESEAHA--SVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRF  260 (406)
Q Consensus       183 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  260 (406)
                      ++++.|++..+.|++++..+........  .+++.+|+|||..|.+|..|+.++|||+.++.....+.+ |..+|..++|
T Consensus       319 lsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpg-ht~~vk~i~F  397 (506)
T KOG0289|consen  319 LSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPG-HTGPVKAISF  397 (506)
T ss_pred             EEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCC-CCCceeEEEe
Confidence            9999999999999999998876655322  799999999999999999999999999999998899987 5678999999


Q ss_pred             EcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC-CCeEEEEEcCCCCEEEEEeCCCcEEEEECC--CceEEEE
Q 015490          261 SPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR-EPVSSFNVSADGKLLAVGTASGDISIIDSS--SLQVRTA  337 (406)
Q Consensus       261 ~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~--~~~~~~~  337 (406)
                      +.+|      |+++++.+|+.|++||+|..+...++.... ..+.+++|.+.|.+|+.++.|=.|++++-.  ++..+..
T Consensus       398 sENG------Y~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~  471 (506)
T KOG0289|consen  398 SENG------YWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKE  471 (506)
T ss_pred             ccCc------eEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeeh
Confidence            9998      467777889999999999988888777654 468999999999999999877667777633  4666666


Q ss_pred             eecccccceEEEEEcCCCCeEEEEECCCcEEEEEe
Q 015490          338 VKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVI  372 (406)
Q Consensus       338 ~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~  372 (406)
                      +. .|.+..+++.|....++++++|.|..++++.+
T Consensus       472 ~~-~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  472 LA-DHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             hh-hcccccceeeecccceEEeeccchhheEEeec
Confidence            64 78889999999999999999999999888764

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=1.6e-26  Score=196.98  Aligned_cols=238  Identities=20%  Similarity=0.270  Sum_probs=207.0

Q ss_pred             CCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCCEEEEeeCCCeE
Q 015490          114 DLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIFAAGSENGNL  191 (406)
Q Consensus       114 ~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~dg~i  191 (406)
                      ..+.++...|....+++|+ |....+++..              ..+.+..+.++ ..|+.+.|+|+...+++++.|..|
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~--------------s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i  285 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKP--------------SNQILATLKGHTKKITSVKFHKDLDTVITASADEII  285 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecc--------------hhhhhhhccCcceEEEEEEeccchhheeecCCcceE
Confidence            5678888888877888888 7688887655              44556666666 679999999999999999999999


Q ss_pred             EEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccC-CcceEEEEEEEcCCCCceEE
Q 015490          192 RVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKE-NDELFASCRFSPLNNEDYVL  270 (406)
Q Consensus       192 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l  270 (406)
                      +||.............|..+|+.+..+|.|.||++++.|++..+.|++++..+...... .+-.+++.+|+|||-     
T Consensus       286 ~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-----  360 (506)
T KOG0289|consen  286 RVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-----  360 (506)
T ss_pred             EeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-----
Confidence            99999887777778888889999999999999999999999999999999988776543 345588999999995     


Q ss_pred             EEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEE
Q 015490          271 YIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALA  350 (406)
Q Consensus       271 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~  350 (406)
                       +++++..|+.|++||+.++..+..|.+|.++|..++|+.+|-||+++++|+.|++||++..+...++.......+.++.
T Consensus       361 -ifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~  439 (506)
T KOG0289|consen  361 -IFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLS  439 (506)
T ss_pred             -EEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEE
Confidence             6788899999999999999999999999999999999999999999999999999999998887777644555799999


Q ss_pred             EcCCCCeEEEEECCCcEEEEE
Q 015490          351 FSYDSRALVSASMDSSVRVTV  371 (406)
Q Consensus       351 ~sp~~~~l~s~s~dg~i~iw~  371 (406)
                      |.+.|.+|+.++.|=+|++++
T Consensus       440 fD~SGt~L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  440 FDQSGTYLGIAGSDLQVYICK  460 (506)
T ss_pred             EcCCCCeEEeecceeEEEEEe
Confidence            999999999997775555555

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.3e-24  Score=178.71  Aligned_cols=271  Identities=14%  Similarity=0.153  Sum_probs=206.9

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe---cCCeEEEEEecc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL---QNSCRLFEWDEV  144 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~---~~~~~i~~~~~~  144 (406)
                      ++.+++++..        .+.+.++....      ...+.++..+.-.|..+.|......++.++   |.+++...+.  
T Consensus        25 ~G~~litss~--------dDsl~LYd~~~------g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~--   88 (311)
T KOG1446|consen   25 DGLLLITSSE--------DDSLRLYDSLS------GKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH--   88 (311)
T ss_pred             CCCEEEEecC--------CCeEEEEEcCC------CceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEee--
Confidence            6666666432        22445554333      347788888888999999987777666664   6677775554  


Q ss_pred             cccceeecceeccceeeeccccc-CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCE
Q 015490          145 ENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKF  223 (406)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~  223 (406)
                                  ..+.++.+.+| ..|+.++.+|-+..+++++.|++|++||++..++...+.....  ..++|.|+|-.
T Consensus        89 ------------dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLi  154 (311)
T KOG1446|consen   89 ------------DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLI  154 (311)
T ss_pred             ------------cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcE
Confidence                        55666667766 7899999999999999999999999999998777665544333  45899999999


Q ss_pred             EEEEeCCCCEEEEEcCCC--eeeee--cccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeec
Q 015490          224 LVSLGNRGPGRVWDLASS--AVATP--LAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVV  299 (406)
Q Consensus       224 l~s~s~d~~i~iwd~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  299 (406)
                      +|++.....|++||++.-  .+...  +..........+.|+|+|+.     + ..+...+.+++.|.-+|....++..+
T Consensus       155 fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~-----i-LlsT~~s~~~~lDAf~G~~~~tfs~~  228 (311)
T KOG1446|consen  155 FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKS-----I-LLSTNASFIYLLDAFDGTVKSTFSGY  228 (311)
T ss_pred             EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCE-----E-EEEeCCCcEEEEEccCCcEeeeEeec
Confidence            999988889999999864  22222  23233456789999999995     2 23356788999999999998888877


Q ss_pred             CCCe---EEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490          300 REPV---SSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       300 ~~~i---~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~  376 (406)
                      ...-   ...+|+||++++++|+.||+|.+|+++++..+..+...+.+++.++.|.|.-.+++++  +..+.+|=....+
T Consensus       229 ~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~~~  306 (311)
T KOG1446|consen  229 PNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDEDA  306 (311)
T ss_pred             cCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEeccccc
Confidence            5332   5788999999999999999999999999999999974478999999999976555554  5678888765443

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=1.2e-27  Score=199.58  Aligned_cols=262  Identities=13%  Similarity=0.198  Sum_probs=212.0

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCc
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQ  169 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (406)
                      .+..|+...    .....++..|.+.|..+++.. +..+.+|.|.+++.|.++..               +..++.+...
T Consensus        90 ~VkiWnlsq----R~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~---------------p~~tilg~s~  149 (433)
T KOG0268|consen   90 EVKIWNLSQ----RECIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDGP---------------PLHTILGKSV  149 (433)
T ss_pred             eEEEEehhh----hhhhheeecccCceeeEEecc-cceEEecCCcceeeeeccCC---------------cceeeecccc
Confidence            456666655    347889999999999999987 55555555999999988752               3344555666


Q ss_pred             EEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCC-EEEEEeCCCCEEEEEcCCCeeeeecc
Q 015490          170 QLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGK-FLVSLGNRGPGRVWDLASSAVATPLA  248 (406)
Q Consensus       170 v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~  248 (406)
                      +..+.-+..+..+++++.  .|.|||.+...++..+.-..+.|.++.|+|-.. .|++++.|+.|.+||++++.+++.+.
T Consensus       150 ~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi  227 (433)
T KOG0268|consen  150 YLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI  227 (433)
T ss_pred             ccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee
Confidence            777777777788999876  599999988888888888888999999999655 67777799999999999999888765


Q ss_pred             cCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc-eEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 015490          249 KENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW-KRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISII  327 (406)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~  327 (406)
                      ...  ....++|+|..      |..+++++|..++.+|++.. .++.....|.+.|.++.|||.|+-+++|+.|.+|+||
T Consensus       228 ~~m--RTN~IswnPea------fnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf  299 (433)
T KOG0268|consen  228 LTM--RTNTICWNPEA------FNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIF  299 (433)
T ss_pred             eec--cccceecCccc------cceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEe
Confidence            432  24579999944      35677899999999999865 4677788899999999999999999999999999999


Q ss_pred             ECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490          328 DSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       328 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~  381 (406)
                      ..+.+.....+..--...|.++.||-|.+++++||.|+.|++|.-...++++.+
T Consensus       300 ~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~  353 (433)
T KOG0268|consen  300 PVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVI  353 (433)
T ss_pred             ecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCC
Confidence            998776655443233456999999999999999999999999999877776654

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.95  E-value=1.6e-26  Score=193.95  Aligned_cols=245  Identities=19%  Similarity=0.251  Sum_probs=194.0

Q ss_pred             cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCC---
Q 015490          104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSE---  178 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~---  178 (406)
                      +++..+ .|.+.|.++...  ++++++|+ |+.+++|+...               +....+. |.+++.+++|-..   
T Consensus        97 ~pl~~~-~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G---------------k~~~~~~Ght~~ik~v~~v~~n~~  158 (423)
T KOG0313|consen   97 KPLQCF-LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG---------------KSIKTIVGHTGPIKSVAWVIKNSS  158 (423)
T ss_pred             Cccccc-cchhhhhhhccc--CceEEEeecCCeeEEEecCC---------------ceEEEEecCCcceeeeEEEecCCc
Confidence            344333 589999999987  68899987 99999987542               2233333 4578887777442   


Q ss_pred             CCEEEEeeCCCeEEEEeCCCcceE----eeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCC--------------
Q 015490          179 GTIFAAGSENGNLRVFKWPSLEII----LNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLAS--------------  240 (406)
Q Consensus       179 g~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~--------------  240 (406)
                      ...|++++.|.++++|.++.++..    ..-.+|...|.++...++|..+++++.|..+.||+..+              
T Consensus       159 ~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rr  238 (423)
T KOG0313|consen  159 SCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRR  238 (423)
T ss_pred             cceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhh
Confidence            346999999999999999876533    22347888999999999999999999999999999321              


Q ss_pred             -----------CeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEc
Q 015490          241 -----------SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVS  309 (406)
Q Consensus       241 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~s  309 (406)
                                 +.++..+. .|...|.++.|++.+       .+.+++.|.+|+.||+.++....++... ..+.++..+
T Consensus       239 k~~~~~~~~~~r~P~vtl~-GHt~~Vs~V~w~d~~-------v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~  309 (423)
T KOG0313|consen  239 KKQKREKEGGTRTPLVTLE-GHTEPVSSVVWSDAT-------VIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYS  309 (423)
T ss_pred             hhhhhhhcccccCceEEec-ccccceeeEEEcCCC-------ceEeecccceEEEEEeecccceeeeecC-cceeEeecc
Confidence                       11222333 456678999999944       4577789999999999999998888765 578999999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCce--E-EEEeecccccceEEEEEcCCC-CeEEEEECCCcEEEEEecCCc
Q 015490          310 ADGKLLAVGTASGDISIIDSSSLQ--V-RTAVKKAHLGIVTALAFSYDS-RALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       310 p~~~~l~~~~~dg~i~i~d~~~~~--~-~~~~~~~~~~~v~~~~~sp~~-~~l~s~s~dg~i~iw~~~~~~  376 (406)
                      |..++|++|+.|..+++||.+++.  . ..++ .+|...|.++.|+|.. ..|++++.|+++++||+++.+
T Consensus       310 ~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~-~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k  379 (423)
T KOG0313|consen  310 PLSKLLASGSSDRHIRLWDPRTGDGSVVSQSL-IGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK  379 (423)
T ss_pred             cccceeeecCCCCceeecCCCCCCCceeEEee-ecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence            999999999999999999998743  3 3445 4999999999999965 457899999999999999877

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.95  E-value=5.4e-27  Score=191.86  Aligned_cols=270  Identities=14%  Similarity=0.224  Sum_probs=206.7

Q ss_pred             ceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccc-eeecc---eeccceeeeccccc-CcEEEEEECCC
Q 015490          105 PVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTE-IRRLG---VKISEKVLSQLENV-GQQLALTFDSE  178 (406)
Q Consensus       105 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~-~~v~~~~~s~~  178 (406)
                      ....+..|..++.+.+|+|||.++++|+ |.+++|++....-.+. ...+.   .......++++-.| ++|+++.|+|.
T Consensus       104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr  183 (430)
T KOG0640|consen  104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR  183 (430)
T ss_pred             ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence            4557889999999999999999999998 9999998776321111 11110   01122455665544 89999999999


Q ss_pred             CCEEEEeeCCCeEEEEeCCCcceE--eeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecc--cCCcce
Q 015490          179 GTIFAAGSENGNLRVFKWPSLEII--LNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLA--KENDEL  254 (406)
Q Consensus       179 g~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--~~~~~~  254 (406)
                      ...|++|+.|++|++||+......  .+......+|.++.|+|.|.+|+.|....++++||+++-++...-.  ..+...
T Consensus       184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~a  263 (430)
T KOG0640|consen  184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGA  263 (430)
T ss_pred             hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccc
Confidence            999999999999999999654322  2233334489999999999999999999999999999988765443  245667


Q ss_pred             EEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeee-c-CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCc
Q 015490          255 FASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQV-V-REPVSSFNVSADGKLLAVGTASGDISIIDSSSL  332 (406)
Q Consensus       255 ~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~-~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~  332 (406)
                      |+++.+++.++      +.++++.||.|++||--+.+++.++.. | ...|.+..|..+|+|+++.+.|..+++|.+.++
T Consensus       264 i~~V~Ys~t~~------lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~  337 (430)
T KOG0640|consen  264 ITQVRYSSTGS------LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG  337 (430)
T ss_pred             eeEEEecCCcc------EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence            99999999998      456778999999999999999888753 3 367999999999999999999999999999999


Q ss_pred             eEEEEeeccc--ccc---eEEEEEcCCCCeEEEEE-CCCcEEEEEecCCcCCCCc
Q 015490          333 QVRTAVKKAH--LGI---VTALAFSYDSRALVSAS-MDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       333 ~~~~~~~~~~--~~~---v~~~~~sp~~~~l~s~s-~dg~i~iw~~~~~~~~~~~  381 (406)
                      +.+..+. +.  .+.   -+...|.....+++.-. ..+.+.-||-++..++..+
T Consensus       338 R~l~~Yt-GAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~  391 (430)
T KOG0640|consen  338 RMLKEYT-GAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALL  391 (430)
T ss_pred             ceEEEEe-cCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhc
Confidence            9998886 22  111   23455666666666543 3467888999888775443

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=2.5e-25  Score=177.94  Aligned_cols=258  Identities=16%  Similarity=0.215  Sum_probs=208.9

Q ss_pred             cEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCC-eEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc
Q 015490           88 AVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGD-GIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE  165 (406)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (406)
                      ...++.++...    ...-...++|.+.|-.++|+|... .+++++ |..+++|+..              ..++.....
T Consensus        43 tv~v~n~e~~r----~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r--------------~~k~~~~i~  104 (313)
T KOG1407|consen   43 TVSVWNLERDR----FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR--------------SGKCTARIE  104 (313)
T ss_pred             ceEEEEecchh----hhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEec--------------cCcEEEEee
Confidence            44556655542    123345789999999999998765 444443 8888887765              333344444


Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeee
Q 015490          166 NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT  245 (406)
Q Consensus       166 ~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~  245 (406)
                      ..+.-.-+.|+|+|+++++++.|..|...|.++.+..... .....+..++|+.++.+++..+..|.|.|....+.+++.
T Consensus       105 ~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~-~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~  183 (313)
T KOG1407|consen  105 TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE-QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQ  183 (313)
T ss_pred             ccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehh-cccceeeeeeecCCCCEEEEecCCceEEEEecccccccc
Confidence            4444556899999999999999999999999887766443 233368889999888888877878999999999999999


Q ss_pred             ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 015490          246 PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDIS  325 (406)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~  325 (406)
                      .+..|.. ...|+.|+|+|++      +++|+.|..+.+||+...-+++.+..+.-+|..++||.||++||+|++|..|-
T Consensus       184 si~AH~s-nCicI~f~p~Gry------fA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~ID  256 (313)
T KOG1407|consen  184 SIKAHPS-NCICIEFDPDGRY------FATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFID  256 (313)
T ss_pred             ccccCCc-ceEEEEECCCCce------EeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEE
Confidence            9998764 4669999999995      68889999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECC---------CcEEEEEec
Q 015490          326 IIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMD---------SSVRVTVIE  373 (406)
Q Consensus       326 i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d---------g~i~iw~~~  373 (406)
                      |=++++|..+..++  +.++...++|+|...+||-++.|         |.|+++-+.
T Consensus       257 IA~vetGd~~~eI~--~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  257 IAEVETGDRVWEIP--CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             eEecccCCeEEEee--ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence            99999999999996  89999999999999988877654         466666543

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=7.1e-26  Score=210.39  Aligned_cols=256  Identities=20%  Similarity=0.238  Sum_probs=212.3

Q ss_pred             EEEecCCCCccccceeE-EecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-C
Q 015490           92 SHFDFASNSLSDQPVAE-LRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-G  168 (406)
Q Consensus        92 ~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  168 (406)
                      ..|+...    ...+.. +.+|.+.|.++++..-+..+++|+ |.++++|+..              .+.+...+.++ .
T Consensus       231 ~~~~~~~----~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~--------------sg~C~~~l~gh~s  292 (537)
T KOG0274|consen  231 HLWDLNN----GYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCS--------------TGECTHSLQGHTS  292 (537)
T ss_pred             EEeeccc----ceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecC--------------CCcEEEEecCCCc
Confidence            4455443    234445 999999999999988778888888 9999998844              44555555555 6


Q ss_pred             cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecc
Q 015490          169 QQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLA  248 (406)
Q Consensus       169 ~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  248 (406)
                      .+.++...  ..++++|+.|.+|++|+++++..+..+.+|..+|+++..+  +.++++|+.|++|++||+.+++++..+.
T Consensus       293 tv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~  368 (537)
T KOG0274|consen  293 SVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLS  368 (537)
T ss_pred             eEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeec
Confidence            67776664  4578889999999999999999998888888899999997  7799999999999999999999999999


Q ss_pred             cCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc-eEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 015490          249 KENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW-KRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISII  327 (406)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~  327 (406)
                      + |...|.++.+.+. .      .+.+++.|+.|++||+++. +++.++..|..-+..+.+  .+++|++++.|++|++|
T Consensus       369 g-H~~~V~sl~~~~~-~------~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~W  438 (537)
T KOG0274|consen  369 G-HTGRVYSLIVDSE-N------RLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLW  438 (537)
T ss_pred             C-CcceEEEEEecCc-c------eEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEe
Confidence            8 4556888877775 3      3567788999999999999 999999999887765554  47899999999999999


Q ss_pred             ECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490          328 DSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       328 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~  381 (406)
                      |..+++.+..+...|.+.|..+++.  ...+++++.||++++||+++++....+
T Consensus       439 D~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  439 DAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             ecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence            9999999999973367888888876  456888999999999999999886654

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.95  E-value=1.6e-25  Score=179.64  Aligned_cols=209  Identities=15%  Similarity=0.162  Sum_probs=185.1

Q ss_pred             cccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeee
Q 015490          165 ENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVA  244 (406)
Q Consensus       165 ~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~  244 (406)
                      .|..+++.+.++.+|.+|++++.|.+..||-..+|+.+..+.+|.+.|++++.+.+.+++++|+.|.++++||+++|+++
T Consensus         8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~l   87 (327)
T KOG0643|consen    8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQL   87 (327)
T ss_pred             cCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEE
Confidence            36688999999999999999999999999999899999999999999999999999999999999999999999999999


Q ss_pred             eecccCCcceEEEEEEEcCCCCceEEEEEEEc----CCCcEEEEEeCC-------CceEEEEeeecCCCeEEEEEcCCCC
Q 015490          245 TPLAKENDELFASCRFSPLNNEDYVLYIAAIT----DRGASIVTWNTT-------TWKRIRTKQVVREPVSSFNVSADGK  313 (406)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~i~~~d~~-------~~~~~~~~~~~~~~i~~~~~sp~~~  313 (406)
                      ..++.  ..++..+.|+++++.     ++++.    +..+.|.++|++       ..++...+..+...++.+-|+|-++
T Consensus        88 a~~k~--~~~Vk~~~F~~~gn~-----~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~  160 (327)
T KOG0643|consen   88 ATWKT--NSPVKRVDFSFGGNL-----ILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE  160 (327)
T ss_pred             EEeec--CCeeEEEeeccCCcE-----EEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC
Confidence            98864  456889999999984     33332    335789999998       4456777778888999999999999


Q ss_pred             EEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCC
Q 015490          314 LLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGG  380 (406)
Q Consensus       314 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~  380 (406)
                      +|++|.+||.|.+||+++++....-...|...|+.+++++|..+++++|.|.+-++||+.+-+.+..
T Consensus       161 ~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kt  227 (327)
T KOG0643|consen  161 TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKT  227 (327)
T ss_pred             EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEE
Confidence            9999999999999999998766655558999999999999999999999999999999988665443

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.9e-26  Score=203.80  Aligned_cols=244  Identities=16%  Similarity=0.198  Sum_probs=204.5

Q ss_pred             EEEEc-cCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCCEEEEeeCCCeEEEE
Q 015490          118 RMAIH-PHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIFAAGSENGNLRVF  194 (406)
Q Consensus       118 ~~~~s-p~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~dg~i~vw  194 (406)
                      .+..+ |.+++|++|+ |+.+++|......++.        .......+++| +.|+.+....+|+.|++++.|-+|++|
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~--------s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W  100 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEP--------STPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVW  100 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCc--------ccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEe
Confidence            34443 4566799988 8988888876543321        12234455555 789999999999999999999999999


Q ss_pred             eCCCc--ceEeeeeccCCceeEEEE-ccCCCEEEEEeCCCCEEEEEcCCCee--eee--------cccCCcceEEEEEEE
Q 015490          195 KWPSL--EIILNESEAHASVKDLSF-SPDGKFLVSLGNRGPGRVWDLASSAV--ATP--------LAKENDELFASCRFS  261 (406)
Q Consensus       195 d~~~~--~~~~~~~~~~~~i~~~~~-s~~~~~l~s~s~d~~i~iwd~~~~~~--~~~--------~~~~~~~~~~~~~~~  261 (406)
                      +...+  -+...+..|.+-|.|+++ -++...+|+|+-|+.|.+||+.++..  +..        +...+...+++++.+
T Consensus       101 ~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N  180 (735)
T KOG0308|consen  101 NAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMN  180 (735)
T ss_pred             ecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecC
Confidence            99776  466677788889999999 77888999999999999999998732  222        222345568888888


Q ss_pred             cCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecc
Q 015490          262 PLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKA  341 (406)
Q Consensus       262 ~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  341 (406)
                      +.+.      ++++|+..+.|++||.++.+.+..+++|...|..+..++||+.+++++.||+|++||+...+++.++. .
T Consensus       181 ~t~t------~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~-v  253 (735)
T KOG0308|consen  181 QTGT------IIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI-V  253 (735)
T ss_pred             Ccce------EEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE-e
Confidence            8874      67888999999999999999999999999999999999999999999999999999999999999986 8


Q ss_pred             cccceEEEEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490          342 HLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       342 ~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~  376 (406)
                      |...|+++..+|+-.++.+|+.||.|..=|+++..
T Consensus       254 H~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~  288 (735)
T KOG0308|consen  254 HKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPA  288 (735)
T ss_pred             ccCceEEEeeCCCcceEEecCCCCcEEecccCCch
Confidence            99999999999999999999999999999998853

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.8e-25  Score=191.30  Aligned_cols=294  Identities=14%  Similarity=0.148  Sum_probs=207.4

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccC-------CCeEEEEe-cCCeEEE
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPH-------GDGIICAL-QNSCRLF  139 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-------~~~l~~~~-~~~~~i~  139 (406)
                      .++.++.+-.     ..-...+.+|.++.+...+....-.   --.....|++|...       |+++|.|. +..+.||
T Consensus       136 sDnlIl~ar~-----eddvs~LEvYVyn~~e~nlYvHHD~---ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIW  207 (463)
T KOG0270|consen  136 SDNLILCARN-----EDDVSYLEVYVYNEEEENLYVHHDF---ILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIW  207 (463)
T ss_pred             CCcEEEEeec-----cCCceEEEEEEEcCCCcceeEecce---eccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEe
Confidence            5666665422     1223467888888766333111100   11244567777542       56899998 9999999


Q ss_pred             EEecccccceee-cceecc-------ceeeecccccCcEEEEEECCCC-CEEEEeeCCCeEEEEeCCCcceEeeeeccCC
Q 015490          140 EWDEVENTEIRR-LGVKIS-------EKVLSQLENVGQQLALTFDSEG-TIFAAGSENGNLRVFKWPSLEIILNESEAHA  210 (406)
Q Consensus       140 ~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  210 (406)
                      +++......... +.....       .+......|...|..++|+..- +.||+|+.|.+|++||+.++++...+..|.+
T Consensus       208 DLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k  287 (463)
T KOG0270|consen  208 DLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGK  287 (463)
T ss_pred             ccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCC
Confidence            999875432211 110000       0011111244677788888754 7899999999999999999999998887778


Q ss_pred             ceeEEEEccC-CCEEEEEeCCCCEEEEEcCCCeee-eecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC
Q 015490          211 SVKDLSFSPD-GKFLVSLGNRGPGRVWDLASSAVA-TPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT  288 (406)
Q Consensus       211 ~i~~~~~s~~-~~~l~s~s~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~  288 (406)
                      .|.++.|+|. ...|++|+.|+++.+.|.+..... ..+.  ....+..++|.|....     ....+..||.|+-+|+|
T Consensus       288 ~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk--~~g~VEkv~w~~~se~-----~f~~~tddG~v~~~D~R  360 (463)
T KOG0270|consen  288 KVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK--FDGEVEKVAWDPHSEN-----SFFVSTDDGTVYYFDIR  360 (463)
T ss_pred             ceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE--eccceEEEEecCCCce-----eEEEecCCceEEeeecC
Confidence            9999999985 568999999999999999852221 1222  2345788999999885     45566789999999998


Q ss_pred             Cc-eEEEEeeecCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCceEEEEeecccc---cceEEEEEcCCC-CeEEEEE
Q 015490          289 TW-KRIRTKQVVREPVSSFNVSAD-GKLLAVGTASGDISIIDSSSLQVRTAVKKAHL---GIVTALAFSYDS-RALVSAS  362 (406)
Q Consensus       289 ~~-~~~~~~~~~~~~i~~~~~sp~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~v~~~~~sp~~-~~l~s~s  362 (406)
                      .. +++.++..|...|.++++++. ..++++++.|+.|++|++.........  .|.   +...|.++.|+- -+|+.|+
T Consensus       361 ~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~--~~~~~~~rl~c~~~~~~~a~~la~GG  438 (463)
T KOG0270|consen  361 NPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVK--EHSFKLGRLHCFALDPDVAFTLAFGG  438 (463)
T ss_pred             CCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccc--cccccccceeecccCCCcceEEEecC
Confidence            75 899999999999999999984 457889999999999998765443322  122   235577777764 4567788


Q ss_pred             CCCcEEEEEecCCcCC
Q 015490          363 MDSSVRVTVIEDKKKS  378 (406)
Q Consensus       363 ~dg~i~iw~~~~~~~~  378 (406)
                      ..+.++|||+.+...+
T Consensus       439 ~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  439 EKAVLRVWDIFTNSPV  454 (463)
T ss_pred             ccceEEEeecccChhH
Confidence            8888999999887654

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.94  E-value=1.2e-23  Score=187.48  Aligned_cols=264  Identities=15%  Similarity=0.200  Sum_probs=189.4

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeeccccc
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV  167 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (406)
                      .+..|+..+.    +.+..+..|. .+.+++|+|+++.+++++  ++.+++  |+..+++...            .+..+
T Consensus        12 ~v~~~d~~t~----~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~--~d~~~~~~~~------------~~~~~   72 (300)
T TIGR03866        12 TISVIDTATL----EVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQV--IDLATGEVIG------------TLPSG   72 (300)
T ss_pred             EEEEEECCCC----ceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEE--EECCCCcEEE------------eccCC
Confidence            4556666542    3556666554 467899999999876554  455555  5544333222            22233


Q ss_pred             CcEEEEEECCCCCEEEEe-eCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCC-CEEEEEcCCCeeee
Q 015490          168 GQQLALTFDSEGTIFAAG-SENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRG-PGRVWDLASSAVAT  245 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~-~i~iwd~~~~~~~~  245 (406)
                      ..+..++|+|+++.++++ ..++.+++||+.+.+.+..+.. ...+.+++|+|+++++++++.++ .+.+||.++++...
T Consensus        73 ~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~  151 (300)
T TIGR03866        73 PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVD  151 (300)
T ss_pred             CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEE
Confidence            345678999999877654 5689999999998777655542 23468899999999999888765 46778998887765


Q ss_pred             ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC-------CCeEEEEEcCCCCEEEEE
Q 015490          246 PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR-------EPVSSFNVSADGKLLAVG  318 (406)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-------~~i~~~~~sp~~~~l~~~  318 (406)
                      .+....  ....++|+|+++.     +++++..++.|++||+++++.+..+..+.       .....++|+|++++++++
T Consensus       152 ~~~~~~--~~~~~~~s~dg~~-----l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~  224 (300)
T TIGR03866       152 NVLVDQ--RPRFAEFTADGKE-----LWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVA  224 (300)
T ss_pred             EEEcCC--CccEEEECCCCCE-----EEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEE
Confidence            443222  3457899999984     44555678999999999988777664321       123468899999986654


Q ss_pred             -eCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEE-ECCCcEEEEEecCCcCCCCch
Q 015490          319 -TASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSA-SMDSSVRVTVIEDKKKSGGLN  382 (406)
Q Consensus       319 -~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~-s~dg~i~iw~~~~~~~~~~~~  382 (406)
                       ..++.+.+||+++++....+.  +...+.+++|+|+|++|+++ +.++.|++||+++++.+..++
T Consensus       225 ~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~  288 (300)
T TIGR03866       225 LGPANRVAVVDAKTYEVLDYLL--VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK  288 (300)
T ss_pred             cCCCCeEEEEECCCCcEEEEEE--eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence             446789999999888776654  44578999999999999876 468999999999998766654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.94  E-value=1.5e-25  Score=208.14  Aligned_cols=241  Identities=19%  Similarity=0.267  Sum_probs=202.2

Q ss_pred             cCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeec-ccc-cCcEEEEEECCCCCEEEEeeC
Q 015490          111 TDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQ-LEN-VGQQLALTFDSEGTIFAAGSE  187 (406)
Q Consensus       111 ~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~v~~~~~s~~g~~l~~~~~  187 (406)
                      .|...+.+..|+  ..+++++. ++.+++|+..  +            ...+.. +.+ .+.|.++++..-+.++++|+.
T Consensus       206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~--~------------~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~  269 (537)
T KOG0274|consen  206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLN--N------------GYLILTRLVGHFGGVWGLAFPSGGDKLVSGST  269 (537)
T ss_pred             cCcchhhhheee--cCeEEecCCCceeEEeecc--c------------ceEEEeeccCCCCCceeEEEecCCCEEEEEec
Confidence            367788999998  45566665 7776665543  2            222222 444 489999999887789999999


Q ss_pred             CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCc
Q 015490          188 NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNED  267 (406)
Q Consensus       188 dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (406)
                      |.++++||..++++...+.+|...|.++...  ...+++|+.|.+|++|++.++..+..+.+ +...|.++..+  +.  
T Consensus       270 D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~-h~~~V~~v~~~--~~--  342 (537)
T KOG0274|consen  270 DKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRG-HTGPVNCVQLD--EP--  342 (537)
T ss_pred             CCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEecc-ccccEEEEEec--CC--
Confidence            9999999999999999999999999988875  44788889999999999999999999987 67789999888  33  


Q ss_pred             eEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCc-eEEEEeecccccce
Q 015490          268 YVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSL-QVRTAVKKAHLGIV  346 (406)
Q Consensus       268 ~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v  346 (406)
                          .+++++.|+.|.+||..+++++..+.+|...|.++.+.+. ..+++|+.|+.|++||+.+. +++..+. +|..-+
T Consensus       343 ----~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~-~h~~~v  416 (537)
T KOG0274|consen  343 ----LLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQ-GHTSLV  416 (537)
T ss_pred             ----EEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhc-CCcccc
Confidence                4567788999999999999999999999999999988865 89999999999999999999 8888886 888888


Q ss_pred             EEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCch
Q 015490          347 TALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLN  382 (406)
Q Consensus       347 ~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~  382 (406)
                      ..+.+  .+++|++++.|++|++||..+++.+..+.
T Consensus       417 ~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~  450 (537)
T KOG0274|consen  417 SSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLE  450 (537)
T ss_pred             ccccc--ccceeEeccccccEEEeecccCceeeeec
Confidence            76665  46799999999999999999988766543

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.94  E-value=7.5e-26  Score=196.31  Aligned_cols=277  Identities=15%  Similarity=0.153  Sum_probs=220.6

Q ss_pred             ccccCCCCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEe--cCCCCceEEEEccCCCeEEEEe-cCCeE
Q 015490           61 DKSDDIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELR--TDSDLPYRMAIHPHGDGIICAL-QNSCR  137 (406)
Q Consensus        61 ~~~~~~~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~sp~~~~l~~~~-~~~~~  137 (406)
                      -....+.+.++++++|-|         .+.+|.+....+..   ++..+.  ...+-+.++.+.|||+.|++|+ ..++.
T Consensus       423 cAvtIS~~trhVyTgGkg---------cVKVWdis~pg~k~---PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastls  490 (705)
T KOG0639|consen  423 CAVTISNPTRHVYTGGKG---------CVKVWDISQPGNKS---PVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLS  490 (705)
T ss_pred             EEEEecCCcceeEecCCC---------eEEEeeccCCCCCC---ccccccccCcccceeeeEecCCCceEEeccccceee
Confidence            334444555666654433         34566655544332   343333  2356789999999999999998 77888


Q ss_pred             EEEEecccccceeecceeccceeeecccc-cCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEE
Q 015490          138 LFEWDEVENTEIRRLGVKISEKVLSQLEN-VGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLS  216 (406)
Q Consensus       138 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~  216 (406)
                      ||++...+......            +.. .-.+.+++.|||.+..+++..||.|.|||+.+...++.+.+|.+.+.||.
T Consensus       491 iWDLAapTprikae------------ltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascId  558 (705)
T KOG0639|consen  491 IWDLAAPTPRIKAE------------LTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID  558 (705)
T ss_pred             eeeccCCCcchhhh------------cCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEE
Confidence            98877644322111            112 23567899999999999999999999999999999999999999999999


Q ss_pred             EccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEe
Q 015490          217 FSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTK  296 (406)
Q Consensus       217 ~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~  296 (406)
                      +++||..|.+|+-|++++.||+++++.+....  ....|.++.++|.+.      +++.+-.++.+.+...... ....+
T Consensus       559 is~dGtklWTGGlDntvRcWDlregrqlqqhd--F~SQIfSLg~cP~~d------WlavGMens~vevlh~skp-~kyql  629 (705)
T KOG0639|consen  559 ISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD--FSSQIFSLGYCPTGD------WLAVGMENSNVEVLHTSKP-EKYQL  629 (705)
T ss_pred             ecCCCceeecCCCccceeehhhhhhhhhhhhh--hhhhheecccCCCcc------ceeeecccCcEEEEecCCc-cceee
Confidence            99999999999999999999999988766543  344578899999998      4677788888888877653 34566


Q ss_pred             eecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEe
Q 015490          297 QVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVI  372 (406)
Q Consensus       297 ~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~  372 (406)
                      ..|...|.++.|.+.|+++++.+.|+.+..|.+.-|..+...+  ....|.++..|.|.++++|||.|....||.+
T Consensus       630 hlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk--E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  630 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--ESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             cccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc--ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            6788899999999999999999999999999999998888875  7789999999999999999999999999876

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=5.1e-25  Score=179.69  Aligned_cols=247  Identities=17%  Similarity=0.193  Sum_probs=186.5

Q ss_pred             cCCCCceEEEEccCCCeEE-EEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCC
Q 015490          111 TDSDLPYRMAIHPHGDGII-CAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSEN  188 (406)
Q Consensus       111 ~h~~~v~~~~~sp~~~~l~-~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  188 (406)
                      .-++.|.+++|||....++ +++ |+++|+|.+... +...          ......+.++|.+++|+.||..+++|+.|
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~-g~~~----------~ka~~~~~~PvL~v~WsddgskVf~g~~D   93 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNS-GQLV----------PKAQQSHDGPVLDVCWSDDGSKVFSGGCD   93 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecC-Cccc----------chhhhccCCCeEEEEEccCCceEEeeccC
Confidence            3467899999999655555 555 999999998764 1111          11223466899999999999999999999


Q ss_pred             CeEEEEeCCCcceEeeeeccCCceeEEEEccCCC--EEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCC
Q 015490          189 GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGK--FLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNE  266 (406)
Q Consensus       189 g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (406)
                      +.+++||+.+++ +..+..|..+|..+.|-+...  .|++||.|++|+.||.+...++.++..+..  ++++..-.  . 
T Consensus        94 k~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR--vYa~Dv~~--p-  167 (347)
T KOG0647|consen   94 KQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER--VYAADVLY--P-  167 (347)
T ss_pred             CceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce--eeehhccC--c-
Confidence            999999999995 446778888999999987655  799999999999999999999888876543  43332221  1 


Q ss_pred             ceEEEEEEEcCCCcEEEEEeCCCceEEEE-ee-ecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCc--eEEEEeeccc
Q 015490          267 DYVLYIAAITDRGASIVTWNTTTWKRIRT-KQ-VVREPVSSFNVSADGKLLAVGTASGDISIIDSSSL--QVRTAVKKAH  342 (406)
Q Consensus       267 ~~~l~~~~~~~~~~~i~~~d~~~~~~~~~-~~-~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~  342 (406)
                           +++.+..++.|.+|+++++..... .. .....++|++..+|....+.|+-+|.+.|..+..+  +.-..++ .|
T Consensus       168 -----m~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFk-CH  241 (347)
T KOG0647|consen  168 -----MAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFK-CH  241 (347)
T ss_pred             -----eeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEE-Ee
Confidence                 234445688999999976543221 11 12356889999998888899999999999988775  3233332 34


Q ss_pred             c---------cceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCC
Q 015490          343 L---------GIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGG  380 (406)
Q Consensus       343 ~---------~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~  380 (406)
                      .         -.|++++|+|.-..|+|++.||++.+||-....++..
T Consensus       242 R~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~  288 (347)
T KOG0647|consen  242 RSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKT  288 (347)
T ss_pred             ccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhc
Confidence            3         2578999999988999999999999999887666543

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.2e-25  Score=206.91  Aligned_cols=207  Identities=21%  Similarity=0.320  Sum_probs=171.5

Q ss_pred             cccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCC----------------------------------------------
Q 015490          165 ENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPS----------------------------------------------  198 (406)
Q Consensus       165 ~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~----------------------------------------------  198 (406)
                      .|.+.|.++.||+||+|||+|+.|+.|+||.+..                                              
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            3558999999999999999999999999998643                                              


Q ss_pred             --------------cceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCC
Q 015490          199 --------------LEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLN  264 (406)
Q Consensus       199 --------------~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (406)
                                    .+++..+.+|.+.|.++.||.+ ++|++++.|.+|++|++...+++..+.  |...|+|++|+|..
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~--HndfVTcVaFnPvD  421 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS--HNDFVTCVAFNPVD  421 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe--cCCeeEEEEecccC
Confidence                          0012345677789999999975 489999999999999999999999985  67789999999988


Q ss_pred             CCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEee-----
Q 015490          265 NEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVK-----  339 (406)
Q Consensus       265 ~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----  339 (406)
                      ..     ...+|+-|+.+++|++...+.+.....+ .-|++++|+|||++.++|+.+|.+++|+....+......     
T Consensus       422 Dr-----yFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~  495 (712)
T KOG0283|consen  422 DR-----YFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHN  495 (712)
T ss_pred             CC-----cEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeecc
Confidence            87     5678899999999999987777666655 679999999999999999999999999998877665443     


Q ss_pred             ---cccccceEEEEEcCCC-CeEEEEECCCcEEEEEecCCcCCCCc
Q 015490          340 ---KAHLGIVTALAFSYDS-RALVSASMDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       340 ---~~~~~~v~~~~~sp~~-~~l~s~s~dg~i~iw~~~~~~~~~~~  381 (406)
                         ..|. .|++++|.|.. ..|++.+.|..|||+|.++.+.+.+|
T Consensus       496 ~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~Kf  540 (712)
T KOG0283|consen  496 KKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKF  540 (712)
T ss_pred             CccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhh
Confidence               1123 79999999853 34666789999999999776655444

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=2.2e-25  Score=189.02  Aligned_cols=210  Identities=15%  Similarity=0.184  Sum_probs=158.7

Q ss_pred             cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEE
Q 015490          104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIF  182 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  182 (406)
                      +...++.+|..+|..+.||||.++|++++ +..+.+  ||..++...+.+..          .+...+.+++|.|||..+
T Consensus       260 kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l--wDv~tgd~~~~y~~----------~~~~S~~sc~W~pDg~~~  327 (519)
T KOG0293|consen  260 KLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL--WDVDTGDLRHLYPS----------GLGFSVSSCAWCPDGFRF  327 (519)
T ss_pred             eeeeeeecccCceEEEEECCCCCeEEecCchHheee--ccCCcchhhhhccc----------CcCCCcceeEEccCCcee
Confidence            56789999999999999999999999887 666555  55554443333211          123578899999999999


Q ss_pred             EEeeCCCeEEEEeCCCcceEeeeeccCC-ceeEEEEccCCCEEEEEeCCCCEEEEEcCCCe-------------------
Q 015490          183 AAGSENGNLRVFKWPSLEIILNESEAHA-SVKDLSFSPDGKFLVSLGNRGPGRVWDLASSA-------------------  242 (406)
Q Consensus       183 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~-------------------  242 (406)
                      ++|+.|+++..||++. +......+... .|.+++.++||+++++.+.|..|++++.++..                   
T Consensus       328 V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d  406 (519)
T KOG0293|consen  328 VTGSPDRTIIMWDLDG-NILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKD  406 (519)
T ss_pred             EecCCCCcEEEecCCc-chhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCC
Confidence            9999999999999854 44445544443 79999999999999998888888888764321                   


Q ss_pred             ----------------------eeeecccCCc-ceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeec
Q 015490          243 ----------------------VATPLAKEND-ELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVV  299 (406)
Q Consensus       243 ----------------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  299 (406)
                                            .+..+.++.. ..+-.-+|.-....     ++++|++|+.|++|+..+++++..+.+|
T Consensus       407 ~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~-----fiaSGSED~kvyIWhr~sgkll~~LsGH  481 (519)
T KOG0293|consen  407 GKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDK-----FIASGSEDSKVYIWHRISGKLLAVLSGH  481 (519)
T ss_pred             CcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcc-----eEEecCCCceEEEEEccCCceeEeecCC
Confidence                                  1111112111 11222334433333     6789999999999999999999999999


Q ss_pred             CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC
Q 015490          300 REPVSSFNVSA-DGKLLAVGTASGDISIIDSSS  331 (406)
Q Consensus       300 ~~~i~~~~~sp-~~~~l~~~~~dg~i~i~d~~~  331 (406)
                      ...|.+++|+| +...+|+++.||+|+||-...
T Consensus       482 s~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  482 SKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             cceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            99999999999 556889999999999998754

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=7.2e-25  Score=188.69  Aligned_cols=213  Identities=20%  Similarity=0.202  Sum_probs=178.2

Q ss_pred             cccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCC--
Q 015490          163 QLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLAS--  240 (406)
Q Consensus       163 ~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~--  240 (406)
                      ....++.|.|++-+|+|.+++.|+..|.|++|.+.+|..+..+..|...|+++.|+.||.+|++++.||.|.+|++..  
T Consensus        77 ~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv  156 (476)
T KOG0646|consen   77 YIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLV  156 (476)
T ss_pred             hcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeec
Confidence            334568899999999999999998999999999999999999988999999999999999999999999999998742  


Q ss_pred             -------CeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCC
Q 015490          241 -------SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGK  313 (406)
Q Consensus       241 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~  313 (406)
                             -++.+.+. +|.-.|+.+...+.+..    -.+.+.+.|.++++||+..+..+.++... ..+.+++.+|-++
T Consensus       157 ~a~~~~~~~p~~~f~-~HtlsITDl~ig~Gg~~----~rl~TaS~D~t~k~wdlS~g~LLlti~fp-~si~av~lDpae~  230 (476)
T KOG0646|consen  157 SADNDHSVKPLHIFS-DHTLSITDLQIGSGGTN----ARLYTASEDRTIKLWDLSLGVLLLTITFP-SSIKAVALDPAER  230 (476)
T ss_pred             ccccCCCccceeeec-cCcceeEEEEecCCCcc----ceEEEecCCceEEEEEeccceeeEEEecC-CcceeEEEccccc
Confidence                   23334444 34556888887776543    23456689999999999999998888755 6799999999999


Q ss_pred             EEEEEeCCCcEEEEECCCce----------------EEEEeeccccc--ceEEEEEcCCCCeEEEEECCCcEEEEEecCC
Q 015490          314 LLAVGTASGDISIIDSSSLQ----------------VRTAVKKAHLG--IVTALAFSYDSRALVSASMDSSVRVTVIEDK  375 (406)
Q Consensus       314 ~l~~~~~dg~i~i~d~~~~~----------------~~~~~~~~~~~--~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~  375 (406)
                      .+++|+.+|.|.+.++.+..                .+..+ .+|.+  +|+|++.+-||..|++|+.||+|+|||+.+.
T Consensus       231 ~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~-~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~  309 (476)
T KOG0646|consen  231 VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVL-VGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK  309 (476)
T ss_pred             EEEecCCcceEEeeehhcCCcccccccccccccccceeeee-ccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence            99999999999998875422                23334 37888  9999999999999999999999999999988


Q ss_pred             cCCCCch
Q 015490          376 KKSGGLN  382 (406)
Q Consensus       376 ~~~~~~~  382 (406)
                      +.++.+.
T Consensus       310 Q~iRtl~  316 (476)
T KOG0646|consen  310 QCIRTLQ  316 (476)
T ss_pred             HHHHHHh
Confidence            8766554

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=3.7e-25  Score=181.75  Aligned_cols=266  Identities=13%  Similarity=0.183  Sum_probs=208.6

Q ss_pred             ccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEe----cccccceee----------------cc--eecc--
Q 015490          103 DQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWD----EVENTEIRR----------------LG--VKIS--  157 (406)
Q Consensus       103 ~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~----~~~~~~~~~----------------~~--~~~~--  157 (406)
                      ..++.++.||.+.|+++.|++.+.++++++ |++..||...    .........                .+  .+..  
T Consensus       180 g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~  259 (481)
T KOG0300|consen  180 GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGH  259 (481)
T ss_pred             ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCc
Confidence            358889999999999999999999888876 8888898732    211100000                00  0000  


Q ss_pred             --ceeeeccccc-CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEE
Q 015490          158 --EKVLSQLENV-GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGR  234 (406)
Q Consensus       158 --~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~  234 (406)
                        ..++..+.+| +.|.++.|...|+.+++++.|.+-.+||+++++.+..+.+|....+.++-+|..+++++.+.|.+.+
T Consensus       260 tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFR  339 (481)
T KOG0300|consen  260 TIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFR  339 (481)
T ss_pred             eeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeE
Confidence              1233344444 7788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCCe-eeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCce-EEEEeeecCCCeEEEEEcCCC
Q 015490          235 VWDLASSA-VATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK-RIRTKQVVREPVSSFNVSADG  312 (406)
Q Consensus       235 iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~i~~~~~sp~~  312 (406)
                      +||++..- .+..+.+ |...+++..|..+.+       ++++++|.+|++||+++.+ ++.++.. ..++..++.+..+
T Consensus       340 LWDFReaI~sV~VFQG-HtdtVTS~vF~~dd~-------vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~  410 (481)
T KOG0300|consen  340 LWDFREAIQSVAVFQG-HTDTVTSVVFNTDDR-------VVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGH  410 (481)
T ss_pred             eccchhhcceeeeecc-cccceeEEEEecCCc-------eeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCC
Confidence            99998543 3445554 455689999999887       4788999999999998765 4555554 4778999999988


Q ss_pred             CEEEEEeCCCcEEEEECCCceEEE---EeecccccceEEEEEcCCC--CeEEEEECCCcEEEEEecCCcC
Q 015490          313 KLLAVGTASGDISIIDSSSLQVRT---AVKKAHLGIVTALAFSYDS--RALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       313 ~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~~v~~~~~sp~~--~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      ..|+.-..+..|++||+...+..+   .-.++|...|.|++|..+-  .-|++|+.|..+.=|++..++.
T Consensus       411 ~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~~  480 (481)
T KOG0300|consen  411 PIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPTS  480 (481)
T ss_pred             ceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecccCC
Confidence            899999989999999997544322   2225899999999998653  3478999999999999987653

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.1e-24  Score=195.49  Aligned_cols=230  Identities=16%  Similarity=0.200  Sum_probs=190.2

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEec-CCCCceEEEEccCCCeEEEEe-cCCeEEEEEeccc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRT-DSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVE  145 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~  145 (406)
                      .+.+++++...|          .+..||...    ...+..+.+ |...|.+++|+  +..+.+|+ ++.+..+++....
T Consensus       228 ~G~~LavG~~~g----------~v~iwD~~~----~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~  291 (484)
T KOG0305|consen  228 DGSHLAVGTSDG----------TVQIWDVKE----QKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQ  291 (484)
T ss_pred             CCCEEEEeecCC----------eEEEEehhh----ccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecch
Confidence            778888876555          466677655    346677777 99999999998  45555555 6666666655421


Q ss_pred             ccceeecceeccceeeeccc-ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEcc-CCCE
Q 015490          146 NTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSP-DGKF  223 (406)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-~~~~  223 (406)
                                   .....+. |...|..+.|++|+.++|+|+.|+.+.|||....+....+..|..+|.+++|+| ....
T Consensus       292 -------------~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~l  358 (484)
T KOG0305|consen  292 -------------HVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGL  358 (484)
T ss_pred             -------------hhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCc
Confidence                         1222234 448899999999999999999999999999988888889999999999999999 4558


Q ss_pred             EEEEe--CCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCC
Q 015490          224 LVSLG--NRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVRE  301 (406)
Q Consensus       224 l~s~s--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~  301 (406)
                      ||+|+  .|+.|++||..++..+..+..  +..|..+.|++..+.    ++.+.|..+..|.+|+..+.+.+..+.+|..
T Consensus       359 LAsGGGs~D~~i~fwn~~~g~~i~~vdt--gsQVcsL~Wsk~~kE----i~sthG~s~n~i~lw~~ps~~~~~~l~gH~~  432 (484)
T KOG0305|consen  359 LATGGGSADRCIKFWNTNTGARIDSVDT--GSQVCSLIWSKKYKE----LLSTHGYSENQITLWKYPSMKLVAELLGHTS  432 (484)
T ss_pred             eEEcCCCcccEEEEEEcCCCcEeccccc--CCceeeEEEcCCCCE----EEEecCCCCCcEEEEeccccceeeeecCCcc
Confidence            88875  599999999999999888754  456999999999986    5667778888999999999999999999999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCc
Q 015490          302 PVSSFNVSADGKLLAVGTASGDISIIDSSSL  332 (406)
Q Consensus       302 ~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~  332 (406)
                      .|..++++|||..+++|+.|.++++|++-..
T Consensus       433 RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  433 RVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            9999999999999999999999999998764

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=3.4e-24  Score=184.24  Aligned_cols=277  Identities=17%  Similarity=0.245  Sum_probs=217.6

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEeccccc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENT  147 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~  147 (406)
                      ...+++++|        ..+.+.++.+|...+.    .++.+.--..+|.+.+|.|+|...++.++..-.+|.||..+.+
T Consensus       224 ~~plllvaG--------~d~~lrifqvDGk~N~----~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak  291 (514)
T KOG2055|consen  224 TAPLLLVAG--------LDGTLRIFQVDGKVNP----KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK  291 (514)
T ss_pred             CCceEEEec--------CCCcEEEEEecCccCh----hheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence            556667764        3446799999988754    5666777788999999999999444444444467777765443


Q ss_pred             ceeecceeccceeeecccc--cCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEE
Q 015490          148 EIRRLGVKISEKVLSQLEN--VGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLV  225 (406)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  225 (406)
                      ..+.          ....+  ...+.....|+++++|+..+..|.|.+....+++.+..+. ..+.|.+++|+.|++.|+
T Consensus       292 ~~k~----------~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~  360 (514)
T KOG2055|consen  292 VTKL----------KPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELL  360 (514)
T ss_pred             cccc----------cCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEE
Confidence            2211          11112  2356778899999999999999999999999998887664 456799999999999999


Q ss_pred             EEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC------ceEEEEeeec
Q 015490          226 SLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT------WKRIRTKQVV  299 (406)
Q Consensus       226 s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~------~~~~~~~~~~  299 (406)
                      +++.+|.|.+||++...+++++.....-.-++++.++++.      ++++|+..|.|.+||.++      .+++..+..-
T Consensus       361 ~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~------ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL  434 (514)
T KOG2055|consen  361 ASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGS------YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL  434 (514)
T ss_pred             EEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCc------eEEeccCcceEEEeccchhhccCCCCchhhhhhh
Confidence            9999999999999999999988765554456777788887      478999999999999753      4556666655


Q ss_pred             CCCeEEEEEcCCCCEEEEEeC--CCcEEEEECCCceEEEEeec--ccccceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490          300 REPVSSFNVSADGKLLAVGTA--SGDISIIDSSSLQVRTAVKK--AHLGIVTALAFSYDSRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       300 ~~~i~~~~~sp~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~  373 (406)
                      ...|+++.|+||++.||.++.  +..+++..+.+......++.  ..-+.|+|++|||.|.+|+.|..+|++.+|.+.
T Consensus       435 tt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  435 TTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             heeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            678999999999999998886  67899999988777666642  223568999999999999999999999999985

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=3.9e-24  Score=175.20  Aligned_cols=266  Identities=14%  Similarity=0.168  Sum_probs=199.6

Q ss_pred             CCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeE
Q 015490          113 SDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNL  191 (406)
Q Consensus       113 ~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i  191 (406)
                      .+.|.+|.|+|.+..|++++ |+++++|+.+..              .....+.+..++.+++|.++ ..+++|+-||.|
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~--------------~l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~v   77 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN--------------SLKLKFKHGAPLLDCAFADE-STIVTGGLDGQV   77 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccch--------------hhhhheecCCceeeeeccCC-ceEEEeccCceE
Confidence            57789999999988888877 999999998753              33345668899999999975 568899999999


Q ss_pred             EEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEE
Q 015490          192 RVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY  271 (406)
Q Consensus       192 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  271 (406)
                      +.+|+.++... .+..|..+|+++.+++....+++|+.|++|++||.+.......+..  ...|.++....+        
T Consensus        78 r~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~--~kkVy~~~v~g~--------  146 (323)
T KOG1036|consen   78 RRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ--GKKVYCMDVSGN--------  146 (323)
T ss_pred             EEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc--CceEEEEeccCC--------
Confidence            99999988765 4556777999999999888999999999999999987554444433  335666655443        


Q ss_pred             EEEEcCCCcEEEEEeCCCceEEEEeee--cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCc----eEEEEeecccc--
Q 015490          272 IAAITDRGASIVTWNTTTWKRIRTKQV--VREPVSSFNVSADGKLLAVGTASGDISIIDSSSL----QVRTAVKKAHL--  343 (406)
Q Consensus       272 ~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~--  343 (406)
                      .+..+..+..+.+||+++.....+...  -+..+.++++-|++.-.++++-||.|.+=..+..    +....++ .|.  
T Consensus       147 ~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFk-CHr~~  225 (323)
T KOG1036|consen  147 RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFK-CHRLS  225 (323)
T ss_pred             EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEE-eeecc
Confidence            234456789999999998765443222  2357899999998888899999999887655543    2333333 342  


Q ss_pred             -------cceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCchHH---H-----HHHHHHHHHHHHHHHhcCCC
Q 015490          344 -------GIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLNLW---I-----IIFILLLAMAAYFVKAKGII  405 (406)
Q Consensus       344 -------~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~  405 (406)
                             -+|++|+|+|--..|+||+.||.|.+||+.+.|++.+++-.   +     ..-.-.||+++.|..+.+.+
T Consensus       226 ~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy~ye~~~~  302 (323)
T KOG1036|consen  226 EKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSYQYERADT  302 (323)
T ss_pred             cCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEechhhhcCCC
Confidence                   37999999999889999999999999999999987766532   1     11112455666666555544

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=2.1e-24  Score=194.70  Aligned_cols=286  Identities=19%  Similarity=0.224  Sum_probs=210.7

Q ss_pred             CccEEEEEEecCCCCccccceeEEecCCCCceEEEEcc------------CCCeEEEEecCCeEEEEEecccccceee--
Q 015490           86 RNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHP------------HGDGIICALQNSCRLFEWDEVENTEIRR--  151 (406)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp------------~~~~l~~~~~~~~~i~~~~~~~~~~~~~--  151 (406)
                      .|.-.+|.||...-.. ......+-.|...|..+.--|            .+.++-+++|+++++|+++.-+...+..  
T Consensus       343 YndhSlYvWDvrD~~k-vgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRN  421 (1080)
T KOG1408|consen  343 YNDHSLYVWDVRDVNK-VGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRN  421 (1080)
T ss_pred             EcCceEEEEecccccc-ccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecc
Confidence            4455778888755332 234445566887777776554            2333444459999999988743333211  


Q ss_pred             -cc-----ee---c-------------cceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccC
Q 015490          152 -LG-----VK---I-------------SEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAH  209 (406)
Q Consensus       152 -~~-----~~---~-------------~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  209 (406)
                       +.     ..   .             ...........-.+.+++.||+|++||+|..-|+++||++...+....+..|.
T Consensus       422 ils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHe  501 (1080)
T KOG1408|consen  422 ILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHE  501 (1080)
T ss_pred             cchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheeccc
Confidence             00     00   0             01111223334578999999999999999999999999999998888888999


Q ss_pred             CceeEEEEcc---CCCEEEEEeCCCCEEEEEcCCCeee-eecccCCcceEEEEEEEcCCCCce-----------------
Q 015490          210 ASVKDLSFSP---DGKFLVSLGNRGPGRVWDLASSAVA-TPLAKENDELFASCRFSPLNNEDY-----------------  268 (406)
Q Consensus       210 ~~i~~~~~s~---~~~~l~s~s~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----------------  268 (406)
                      ..|.|+.|+.   ..++|++++.|..|+|||+...-.+ .++. .|...|+++.|...+-+-.                 
T Consensus       502 sEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld-~HSssITsvKFa~~gln~~MiscGADksimFr~~qk  580 (1080)
T KOG1408|consen  502 SEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLD-GHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQK  580 (1080)
T ss_pred             ceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhc-ccccceeEEEEeecCCceEEEeccCchhhheehhcc
Confidence            9999999985   3568999999999999998643222 2222 2233344444443331100                 


Q ss_pred             -----------------EEE---------EEEEcCCCcEEEEEeCCCceEEEEeeec---CCCeEEEEEcCCCCEEEEEe
Q 015490          269 -----------------VLY---------IAAITDRGASIVTWNTTTWKRIRTKQVV---REPVSSFNVSADGKLLAVGT  319 (406)
Q Consensus       269 -----------------~l~---------~~~~~~~~~~i~~~d~~~~~~~~~~~~~---~~~i~~~~~sp~~~~l~~~~  319 (406)
                                       .+|         .+++++.|..|++||+.+++..+.|++.   .+....+...|.|.||++.+
T Consensus       581 ~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atSc  660 (1080)
T KOG1408|consen  581 ASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSC  660 (1080)
T ss_pred             ccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEee
Confidence                             000         3566788999999999999999999764   46778899999999999999


Q ss_pred             CCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490          320 ASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIED  374 (406)
Q Consensus       320 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~  374 (406)
                      .|.++.++|..+++++.+.. +|...|+.+.|++|.++|++.+.||.|.||.+..
T Consensus       661 sdktl~~~Df~sgEcvA~m~-GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  661 SDKTLCFVDFVSGECVAQMT-GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             cCCceEEEEeccchhhhhhc-CcchheeeeeecccchhheeecCCceEEEEECch
Confidence            99999999999999999996 9999999999999999999999999999999865

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=7.2e-26  Score=188.94  Aligned_cols=247  Identities=15%  Similarity=0.225  Sum_probs=201.3

Q ss_pred             cceeEEecCCCCceEEEEccCC-CeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCC
Q 015490          104 QPVAELRTDSDLPYRMAIHPHG-DGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGT  180 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~~-~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~  180 (406)
                      ..+..+.||.+.|.|++=+|.. ..+++|+ ||.++||++.              ...++..+..| +.|..+++..  .
T Consensus        57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnls--------------qR~~~~~f~AH~G~V~Gi~v~~--~  120 (433)
T KOG0268|consen   57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLS--------------QRECIRTFKAHEGLVRGICVTQ--T  120 (433)
T ss_pred             cchhhccccccccchhhcCcchhhhhhccccCceEEEEehh--------------hhhhhheeecccCceeeEEecc--c
Confidence            4567789999999999999987 5677776 9999998876              33444555555 7899999987  5


Q ss_pred             EEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEE
Q 015490          181 IFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRF  260 (406)
Q Consensus       181 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  260 (406)
                      .+++++.|.+|+.|.++.. ....+. ....+..+.-+..+..+++++.  .|.|||.....++..+.-..+ .+.++.|
T Consensus       121 ~~~tvgdDKtvK~wk~~~~-p~~til-g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~D-ti~svkf  195 (433)
T KOG0268|consen  121 SFFTVGDDKTVKQWKIDGP-PLHTIL-GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGAD-SISSVKF  195 (433)
T ss_pred             ceEEecCCcceeeeeccCC-cceeee-ccccccccccccccccccccCc--eeeecccccCCccceeecCCC-ceeEEec
Confidence            6888899999999998653 444433 3446777777777788888876  599999988888888775544 4789999


Q ss_pred             EcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeec
Q 015490          261 SPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKK  340 (406)
Q Consensus       261 ~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  340 (406)
                      +|....     +++++..|+.|.+||+++.++++..... ..-..++|+|.+-.+++|++|..++.||++..........
T Consensus       196 NpvETs-----ILas~~sDrsIvLyD~R~~~Pl~KVi~~-mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~  269 (433)
T KOG0268|consen  196 NPVETS-----ILASCASDRSIVLYDLRQASPLKKVILT-MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK  269 (433)
T ss_pred             CCCcch-----heeeeccCCceEEEecccCCccceeeee-ccccceecCccccceeeccccccceehhhhhhcccchhhc
Confidence            999886     7788889999999999999988877654 3357899999887888999999999999998665544445


Q ss_pred             ccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490          341 AHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       341 ~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      +|...|.++.|||.|+-+++||.|.+|+||.++.+..
T Consensus       270 dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~S  306 (433)
T KOG0268|consen  270 DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHS  306 (433)
T ss_pred             ccceeEEEeccCCCcchhccccccceEEEeecCCCcc
Confidence            8999999999999999999999999999999987765

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=7.7e-25  Score=195.59  Aligned_cols=285  Identities=16%  Similarity=0.184  Sum_probs=222.2

Q ss_pred             cccCCCCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEE
Q 015490           62 KSDDIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFE  140 (406)
Q Consensus        62 ~~~~~~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~  140 (406)
                      .-...+.+++++.+|..|        .+.++.+....+......+..++.|.++|..+....+++.|++++ |-++++|+
T Consensus        30 Lq~da~~~ryLfTgGRDg--------~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~  101 (735)
T KOG0308|consen   30 LQLDAPNGRYLFTGGRDG--------IIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWN  101 (735)
T ss_pred             ccccCCCCceEEecCCCc--------eEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEee
Confidence            334455677777664333        234444444443333345889999999999999999998888876 99999988


Q ss_pred             Eecccccceeecceeccceeeeccc-ccCcEEEEEE-CCCCCEEEEeeCCCeEEEEeCCCcce----------Eeeee-c
Q 015490          141 WDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTF-DSEGTIFAAGSENGNLRVFKWPSLEI----------ILNES-E  207 (406)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~-s~~g~~l~~~~~dg~i~vwd~~~~~~----------~~~~~-~  207 (406)
                      .....            .-+..+++ |.+.|.|+++ .++..++|+|+-|+.|.+||++++..          ...+. +
T Consensus       102 ~~~~~------------~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG  169 (735)
T KOG0308|consen  102 AHKDN------------TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSG  169 (735)
T ss_pred             cccCc------------chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCC
Confidence            76532            12333444 4488999999 78889999999999999999987732          12222 5


Q ss_pred             cCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeC
Q 015490          208 AHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNT  287 (406)
Q Consensus       208 ~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~  287 (406)
                      +...|++++-++.|..|++|+..+.+++||.++.+.+..+.+| ...|..+..+++|..      +.+++.||+|++||+
T Consensus       170 ~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGH-TdNVr~ll~~dDGt~------~ls~sSDgtIrlWdL  242 (735)
T KOG0308|consen  170 PKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGH-TDNVRVLLVNDDGTR------LLSASSDGTIRLWDL  242 (735)
T ss_pred             CccceeeeecCCcceEEEecCcccceEEeccccccceeeeecc-ccceEEEEEcCCCCe------EeecCCCceEEeeec
Confidence            5568999999999999999999999999999999999999855 556899999999986      567788999999999


Q ss_pred             CCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcE
Q 015490          288 TTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSV  367 (406)
Q Consensus       288 ~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i  367 (406)
                      ...+++.++..|...++++..+|+=..+++|+.||.|..=|+++......+- ....+|..+..+.+..-+=+++.|+.|
T Consensus       243 gqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlic-k~daPv~~l~~~~~~~~~WvtTtds~I  321 (735)
T KOG0308|consen  243 GQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLIC-KEDAPVLKLHLHEHDNSVWVTTTDSSI  321 (735)
T ss_pred             cccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEee-cCCCchhhhhhccccCCceeeeccccc
Confidence            9999999999999999999999999999999999999999998843322221 355577777777544444566789999


Q ss_pred             EEEEecC
Q 015490          368 RVTVIED  374 (406)
Q Consensus       368 ~iw~~~~  374 (406)
                      +-|..+-
T Consensus       322 ~rW~~~~  328 (735)
T KOG0308|consen  322 KRWKLEP  328 (735)
T ss_pred             eecCCcc
Confidence            9998754

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.93  E-value=3.7e-25  Score=192.02  Aligned_cols=254  Identities=15%  Similarity=0.214  Sum_probs=207.2

Q ss_pred             cCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCe
Q 015490          111 TDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGN  190 (406)
Q Consensus       111 ~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  190 (406)
                      .|.+.|.++.++...+++++|+.+.++||++.....+.        ....+..+.....++++.++|||+.|++|++-.+
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~--------PvsqLdcl~rdnyiRSckL~pdgrtLivGGeast  488 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKS--------PVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEAST  488 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCC--------ccccccccCcccceeeeEecCCCceEEeccccce
Confidence            58889999999999999999999999999887542211        1111222334567999999999999999999999


Q ss_pred             EEEEeCCCcceEee--eeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCce
Q 015490          191 LRVFKWPSLEIILN--ESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDY  268 (406)
Q Consensus       191 i~vwd~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (406)
                      +.|||+........  +.......++++.+||.+..+++..||.|.|||+.+...++.+.++.+. ..|+..+++|.+  
T Consensus       489 lsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDG-ascIdis~dGtk--  565 (705)
T KOG0639|consen  489 LSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG-ASCIDISKDGTK--  565 (705)
T ss_pred             eeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCC-ceeEEecCCCce--
Confidence            99999976544322  3222337788999999999999999999999999999999999987654 779999999986  


Q ss_pred             EEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEE
Q 015490          269 VLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTA  348 (406)
Q Consensus       269 ~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~  348 (406)
                          +-+++-|.+|+.||+++++.+..... ...|.++.++|++.++++|-.++.+.|......+. ..+. -|...|.+
T Consensus       566 ----lWTGGlDntvRcWDlregrqlqqhdF-~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-yqlh-lheScVLS  638 (705)
T KOG0639|consen  566 ----LWTGGLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-YQLH-LHESCVLS  638 (705)
T ss_pred             ----eecCCCccceeehhhhhhhhhhhhhh-hhhheecccCCCccceeeecccCcEEEEecCCccc-eeec-ccccEEEE
Confidence                45778999999999999887665543 36799999999999999999999999988764443 3442 69999999


Q ss_pred             EEEcCCCCeEEEEECCCcEEEEEecCCcCCCCch
Q 015490          349 LAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLN  382 (406)
Q Consensus       349 ~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~  382 (406)
                      +.|.+.|+++++.+.|+-+..|...-|..+.+.+
T Consensus       639 lKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk  672 (705)
T KOG0639|consen  639 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK  672 (705)
T ss_pred             EEecccCceeeecCchhhhhhccCccccceeecc
Confidence            9999999999999999999999998877655443

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.93  E-value=1.5e-25  Score=178.08  Aligned_cols=251  Identities=17%  Similarity=0.213  Sum_probs=206.9

Q ss_pred             ceeEEecCCCCceEEEEcc---CCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCC
Q 015490          105 PVAELRTDSDLPYRMAIHP---HGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEG  179 (406)
Q Consensus       105 ~~~~~~~h~~~v~~~~~sp---~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g  179 (406)
                      ...+..+|+.+|..++|+|   +|-+|++++ |+.-.+.+=+              +..-+.++.+| +.|.....+.+.
T Consensus         6 ~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~--------------tgdwigtfeghkgavw~~~l~~na   71 (334)
T KOG0278|consen    6 TPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGD--------------TGDWIGTFEGHKGAVWSATLNKNA   71 (334)
T ss_pred             CceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCC--------------CCCcEEeeeccCcceeeeecCchh
Confidence            3456789999999999985   777788777 6665553322              34455566666 889999999998


Q ss_pred             CEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeee-eecccCCcceEEEE
Q 015490          180 TIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVA-TPLAKENDELFASC  258 (406)
Q Consensus       180 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~  258 (406)
                      ..-|+++.|-+-++||.-+|..+..+ .|..-|..++|+.|.++|++|+.+..++|||++..+.. ..+. .+...|..+
T Consensus        72 ~~aasaaadftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~-ghtg~Ir~v  149 (334)
T KOG0278|consen   72 TRAASAAADFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEIS-GHTGGIRTV  149 (334)
T ss_pred             hhhhhhcccchhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhc-CCCCcceeE
Confidence            88999999999999999999888765 45557999999999999999999999999999876544 3444 445568888


Q ss_pred             EEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEe
Q 015490          259 RFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAV  338 (406)
Q Consensus       259 ~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~  338 (406)
                      -|....+.      +.+...++.|++||.++++.+.++... .+|+++.++++|++|.++ ..+.|.+||..+...+..+
T Consensus       150 ~wc~eD~~------iLSSadd~tVRLWD~rTgt~v~sL~~~-s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~  221 (334)
T KOG0278|consen  150 LWCHEDKC------ILSSADDKTVRLWDHRTGTEVQSLEFN-SPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSY  221 (334)
T ss_pred             EEeccCce------EEeeccCCceEEEEeccCcEEEEEecC-CCCcceeeccCCCEEEEe-cCceeEEeccccccceeec
Confidence            88887774      344488999999999999999998865 679999999999988765 4677999999999999887


Q ss_pred             ecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490          339 KKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       339 ~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~  381 (406)
                      .  -...|.+...+|+...+++|+.|..++.||..+++.++.+
T Consensus       222 k--~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~  262 (334)
T KOG0278|consen  222 K--MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY  262 (334)
T ss_pred             c--CccccccccccCCCceEEecCcceEEEEEeccCCceeeec
Confidence            5  5567999999999999999999999999999999987763

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=2.7e-24  Score=176.81  Aligned_cols=249  Identities=16%  Similarity=0.213  Sum_probs=182.1

Q ss_pred             ceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEE
Q 015490          105 PVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFA  183 (406)
Q Consensus       105 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  183 (406)
                      .+..+++|.+.|++++|+.||++|++++ |+.++||+.+.-..++.+.         ++..-.-+..+.+.|+||-+-++
T Consensus        78 ~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~---------~R~nve~dhpT~V~FapDc~s~v  148 (420)
T KOG2096|consen   78 NVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRC---------IRQNVEYDHPTRVVFAPDCKSVV  148 (420)
T ss_pred             hhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhH---------hhccccCCCceEEEECCCcceEE
Confidence            4567899999999999999999999987 9999998877543332221         11111224668899999987655


Q ss_pred             Ee-eCCCeEEEEeCCC---cceEee--------e-eccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccC
Q 015490          184 AG-SENGNLRVFKWPS---LEIILN--------E-SEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKE  250 (406)
Q Consensus       184 ~~-~~dg~i~vwd~~~---~~~~~~--------~-~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  250 (406)
                      +. -...++++|.+..   |.....        + ..|...+..+-...++.+|++++.|..|.+|+++ |+.+..+...
T Consensus       149 v~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn  227 (420)
T KOG2096|consen  149 VSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTN  227 (420)
T ss_pred             EEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccc
Confidence            54 4456899998742   221111        1 1222356667777788999999999999999998 8887777654


Q ss_pred             CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC---Cc-----eEEEEeeecCCCeEEEEEcCCCCEEEEEeCCC
Q 015490          251 NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT---TW-----KRIRTKQVVREPVSSFNVSADGKLLAVGTASG  322 (406)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~---~~-----~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg  322 (406)
                      .. ..+..+.+|+|+      ++++++....|++|..-   .|     +.+..+.+|...|..++|+++.+.+++.+.||
T Consensus       228 q~-~n~~aavSP~GR------Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG  300 (420)
T KOG2096|consen  228 QS-SNYDAAVSPDGR------FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG  300 (420)
T ss_pred             cc-cccceeeCCCCc------EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCC
Confidence            33 245788999999      34555677889999863   22     24567889999999999999999999999999


Q ss_pred             cEEEEECCC-------------c---------eEEE------------------------------EeecccccceEEEE
Q 015490          323 DISIIDSSS-------------L---------QVRT------------------------------AVKKAHLGIVTALA  350 (406)
Q Consensus       323 ~i~i~d~~~-------------~---------~~~~------------------------------~~~~~~~~~v~~~~  350 (406)
                      +++|||++-             +         .+++                              .+...|...|.+++
T Consensus       301 ~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is  380 (420)
T KOG2096|consen  301 KWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSIS  380 (420)
T ss_pred             cEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEE
Confidence            999999741             1         0110                              00145778899999


Q ss_pred             EcCCCCeEEEEECCCcEEEEE
Q 015490          351 FSYDSRALVSASMDSSVRVTV  371 (406)
Q Consensus       351 ~sp~~~~l~s~s~dg~i~iw~  371 (406)
                      |+++|++++|++ |..+++..
T Consensus       381 ~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  381 YSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             ecCCCcEEeeec-ceeeeeec
Confidence            999999999986 66788776

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.93  E-value=1.9e-23  Score=191.70  Aligned_cols=196  Identities=18%  Similarity=0.193  Sum_probs=173.1

Q ss_pred             CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeee---eccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeee
Q 015490          168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNE---SEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVA  244 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~  244 (406)
                      ..+++++.++.|++.+.|...|+|-+|++++|.....+   ..|..+|++++...-++.+++++.+|.+++||.......
T Consensus       449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~  528 (910)
T KOG1539|consen  449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK  528 (910)
T ss_pred             cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence            46788999999999999999999999999999888777   467779999999888899999999999999999988877


Q ss_pred             eecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcE
Q 015490          245 TPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDI  324 (406)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i  324 (406)
                      ..+....  .+.++..+....      +++...++-.|+++|..+.+.++.+.+|...|++++|||||++|++++.|++|
T Consensus       529 ~~l~l~~--~~~~iv~hr~s~------l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tI  600 (910)
T KOG1539|consen  529 KSLRLGS--SITGIVYHRVSD------LLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTI  600 (910)
T ss_pred             eeeccCC--Ccceeeeeehhh------hhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcE
Confidence            7766443  356677776655      45666789999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECC-CcEEEEEec
Q 015490          325 SIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMD-SSVRVTVIE  373 (406)
Q Consensus       325 ~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d-g~i~iw~~~  373 (406)
                      ++||+.++..+..+.  -..+..++.|+|+|.+|||...| ..|++|-=.
T Consensus       601 r~wDlpt~~lID~~~--vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNk  648 (910)
T KOG1539|consen  601 RTWDLPTGTLIDGLL--VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK  648 (910)
T ss_pred             EEEeccCcceeeeEe--cCCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence            999999999998885  67789999999999999999988 679999643

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=4.1e-25  Score=200.98  Aligned_cols=250  Identities=17%  Similarity=0.226  Sum_probs=195.1

Q ss_pred             CCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECC-CCCEEEEeeCCCeEE
Q 015490          114 DLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDS-EGTIFAAGSENGNLR  192 (406)
Q Consensus       114 ~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~  192 (406)
                      ....+|..+++-..+++++....+||.++.........+..+      ....-...+..+.|+. +.++||+++..|.|.
T Consensus        40 ~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k------~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~  113 (839)
T KOG0269|consen   40 AKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFK------TKQNKFYSAADVKWGQLYSNLIATCSTNGVIS  113 (839)
T ss_pred             cccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecc------cccceeeehhhcccccchhhhheeecCCCcEE
Confidence            345677888998999999888889988876544332222210      0011123455678875 568999999999999


Q ss_pred             EEeCCC---cceEeeeeccCCceeEEEEccC-CCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCce
Q 015490          193 VFKWPS---LEIILNESEAHASVKDLSFSPD-GKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDY  268 (406)
Q Consensus       193 vwd~~~---~~~~~~~~~~~~~i~~~~~s~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (406)
                      +||+..   .+.+..+..|...++++.|++. ..+|++||.||+|++||++..+...++.. ....++.+.|+|....  
T Consensus       114 vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~-nSESiRDV~fsp~~~~--  190 (839)
T KOG0269|consen  114 VWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS-NSESIRDVKFSPGYGN--  190 (839)
T ss_pred             EEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc-cchhhhceeeccCCCc--
Confidence            999976   4555667788889999999884 55899999999999999999888877766 4556899999998865  


Q ss_pred             EEEEEEEcCCCcEEEEEeCCCc-eEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceE
Q 015490          269 VLYIAAITDRGASIVTWNTTTW-KRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVT  347 (406)
Q Consensus       269 ~l~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~  347 (406)
                         ..+++.+.|.+.+||++.. ++...+..|.++|.++.|+|++.+||+|+.|+.|+|||+.+.+......-....+|.
T Consensus       191 ---~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~  267 (839)
T KOG0269|consen  191 ---KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVG  267 (839)
T ss_pred             ---eEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceee
Confidence               5677789999999999875 457788899999999999999999999999999999999865543332212457899


Q ss_pred             EEEEcCCCCe-EEEEE--CCCcEEEEEecCC
Q 015490          348 ALAFSYDSRA-LVSAS--MDSSVRVTVIEDK  375 (406)
Q Consensus       348 ~~~~sp~~~~-l~s~s--~dg~i~iw~~~~~  375 (406)
                      .+.|-|+.++ |++++  .|-.|+|||++.+
T Consensus       268 rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP  298 (839)
T KOG0269|consen  268 RVKWRPARSYHLATCSMVVDTSVHVWDVRRP  298 (839)
T ss_pred             eeeeccCccchhhhhhccccceEEEEeeccc
Confidence            9999998654 66665  5778999999875

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=1.2e-23  Score=180.85  Aligned_cols=238  Identities=14%  Similarity=0.196  Sum_probs=190.6

Q ss_pred             ecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCCEEEEeeC
Q 015490          110 RTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIFAAGSE  187 (406)
Q Consensus       110 ~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~  187 (406)
                      ++|...+.+++.++||++|++|+ |..+.||+.+.              .+.++.+.+| +.|.+++|-.....+++++.
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t--------------~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~  264 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDT--------------LEHVKVFKGHRGAVSSLAFRKGTSELYSASA  264 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCcc--------------cchhhcccccccceeeeeeecCccceeeeec
Confidence            48999999999999999999998 88777877663              3334444455 88999999988888999999


Q ss_pred             CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCc
Q 015490          188 NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNED  267 (406)
Q Consensus       188 dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (406)
                      |..|++|+++....+.++.+|++.|.++.-..-++.+-+++.|+++++|++..... ..+. .+...+.|++|-.+..  
T Consensus       265 Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq-lifr-g~~~sidcv~~In~~H--  340 (479)
T KOG0299|consen  265 DRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ-LIFR-GGEGSIDCVAFINDEH--  340 (479)
T ss_pred             CCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccce-eeee-CCCCCeeeEEEecccc--
Confidence            99999999999999999999999999999887777777777999999999944322 2233 3355688899987775  


Q ss_pred             eEEEEEEEcCCCcEEEEEeCCCceEEEEeee-c-----------CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCc---
Q 015490          268 YVLYIAAITDRGASIVTWNTTTWKRIRTKQV-V-----------REPVSSFNVSADGKLLAVGTASGDISIIDSSSL---  332 (406)
Q Consensus       268 ~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~-----------~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~---  332 (406)
                           +++|+.+|.|.+|++.+.+++.+... |           ...|++++..|...++++|+.+|.|++|-+..+   
T Consensus       341 -----fvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~  415 (479)
T KOG0299|consen  341 -----FVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRA  415 (479)
T ss_pred             -----eeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccc
Confidence                 47889999999999999888776542 1           127899999999999999999999999998876   


Q ss_pred             -eEEEEeecccccceEEEEEcCCCCeEEEE-ECCCcEEEEEe
Q 015490          333 -QVRTAVKKAHLGIVTALAFSYDSRALVSA-SMDSSVRVTVI  372 (406)
Q Consensus       333 -~~~~~~~~~~~~~v~~~~~sp~~~~l~s~-s~dg~i~iw~~  372 (406)
                       +++..+.  ..+.|++++|+++|+.+++| +....+--|-.
T Consensus       416 i~~l~~ls--~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~  455 (479)
T KOG0299|consen  416 INLLYSLS--LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWC  455 (479)
T ss_pred             cceeeecc--cccEEEEEEEccCCCEEEEecccccccceeeE
Confidence             3444443  67889999999999966655 44545544433

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=2.6e-24  Score=170.60  Aligned_cols=256  Identities=16%  Similarity=0.175  Sum_probs=197.4

Q ss_pred             EecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECC--CCCEEEE
Q 015490          109 LRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDS--EGTIFAA  184 (406)
Q Consensus       109 ~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~--~g~~l~~  184 (406)
                      -..|.+-|..+...=-|++|++++ |++++|+.......           .+.+.++.+| ++|..++|..  -|.+||+
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~-----------s~ll~~L~Gh~GPVwqv~wahPk~G~iLAS   75 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ-----------SKLLAELTGHSGPVWKVAWAHPKFGTILAS   75 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC-----------ceeeeEecCCCCCeeEEeecccccCcEeeE
Confidence            356888888888888899999987 99999998776432           1344455555 8999999976  7899999


Q ss_pred             eeCCCeEEEEeCCCcce--EeeeeccCCceeEEEEccC--CCEEEEEeCCCCEEEEEcCCC--eeeeecccCCcceEEEE
Q 015490          185 GSENGNLRVFKWPSLEI--ILNESEAHASVKDLSFSPD--GKFLVSLGNRGPGRVWDLASS--AVATPLAKENDELFASC  258 (406)
Q Consensus       185 ~~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~~--~~~l~s~s~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~  258 (406)
                      ++.||.|.||.-++++-  ......|...|++++|.|.  |-.|++++.||.|.|.+.++.  .....+...|...++++
T Consensus        76 csYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsV  155 (299)
T KOG1332|consen   76 CSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSV  155 (299)
T ss_pred             eecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccccee
Confidence            99999999999877742  3344566779999999885  568999999999999998764  33344445566678899


Q ss_pred             EEEcCCCCc--------eEEEEEEEcCCCcEEEEEeCCCc--eEEEEeeecCCCeEEEEEcCCC----CEEEEEeCCCcE
Q 015490          259 RFSPLNNED--------YVLYIAAITDRGASIVTWNTTTW--KRIRTKQVVREPVSSFNVSADG----KLLAVGTASGDI  324 (406)
Q Consensus       259 ~~~~~~~~~--------~~l~~~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~i~~~~~sp~~----~~l~~~~~dg~i  324 (406)
                      +|.|..-..        .-..-+++++-|..|++|+..++  +.-.++..|...|+.++|.|.-    .+||+++.||++
T Consensus       156 swapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~v  235 (299)
T KOG1332|consen  156 SWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTV  235 (299)
T ss_pred             eecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcE
Confidence            999872110        01224688899999999998764  3455688999999999999954    589999999999


Q ss_pred             EEEECCCc--eEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCC
Q 015490          325 SIIDSSSL--QVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDK  375 (406)
Q Consensus       325 ~i~d~~~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~  375 (406)
                      .||..+..  .-..++.......+..+.||..|..|+.++.|+.|.+|.-...
T Consensus       236 iIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~  288 (299)
T KOG1332|consen  236 IIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVD  288 (299)
T ss_pred             EEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence            99987632  2222333245577999999999999999999999999986543

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.6e-23  Score=180.13  Aligned_cols=250  Identities=17%  Similarity=0.237  Sum_probs=199.4

Q ss_pred             CCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCC-EEEEeeCCCe
Q 015490          113 SDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGT-IFAAGSENGN  190 (406)
Q Consensus       113 ~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~  190 (406)
                      .+.|++|.|+|....+++++ |+.++||.+|......++.+.+           ...+|.+++|.|+|+ .+++++....
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l-----------~~fPi~~a~f~p~G~~~i~~s~rrky  281 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHL-----------EKFPIQKAEFAPNGHSVIFTSGRRKY  281 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeee-----------ccCccceeeecCCCceEEEecccceE
Confidence            57899999999999998888 9999999999876554443322           236789999999998 8999999999


Q ss_pred             EEEEeCCCcceEe--eeeccCC-ceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCc
Q 015490          191 LRVFKWPSLEIIL--NESEAHA-SVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNED  267 (406)
Q Consensus       191 i~vwd~~~~~~~~--~~~~~~~-~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (406)
                      ++.||+.+.+...  ...++.. .+.....++++++|+..+..|.|.+....+++.+..++.  .+.+..+.|+.+++. 
T Consensus       282 ~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki--eG~v~~~~fsSdsk~-  358 (514)
T KOG2055|consen  282 LYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI--EGVVSDFTFSSDSKE-  358 (514)
T ss_pred             EEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee--ccEEeeEEEecCCcE-
Confidence            9999998876432  2222222 678889999999999999999999999999998888764  456889999999975 


Q ss_pred             eEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCC-CeEEEEEcCCCCEEEEEeCCCcEEEEECCC------ceEEEEeec
Q 015490          268 YVLYIAAITDRGASIVTWNTTTWKRIRTKQVVRE-PVSSFNVSADGKLLAVGTASGDISIIDSSS------LQVRTAVKK  340 (406)
Q Consensus       268 ~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~  340 (406)
                          ++ ..+.+|.|++||++...+++.+....+ .-+++|.|+++.|+|+|+..|.|.|||.++      .+++..+. 
T Consensus       359 ----l~-~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d-  432 (514)
T KOG2055|consen  359 ----LL-ASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD-  432 (514)
T ss_pred             ----EE-EEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh-
Confidence                33 335678999999999999988875432 236788889999999999999999999754      35555554 


Q ss_pred             ccccceEEEEEcCCCCeEEEEE--CCCcEEEEEecCCcCCCCch
Q 015490          341 AHLGIVTALAFSYDSRALVSAS--MDSSVRVTVIEDKKKSGGLN  382 (406)
Q Consensus       341 ~~~~~v~~~~~sp~~~~l~s~s--~dg~i~iw~~~~~~~~~~~~  382 (406)
                      .....|++++|++|++.|+.+|  .+..+++-.+.+...-..||
T Consensus       433 NLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP  476 (514)
T KOG2055|consen  433 NLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFP  476 (514)
T ss_pred             hhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCC
Confidence            4667899999999999988776  56789999888765544444

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=2.2e-23  Score=193.32  Aligned_cols=243  Identities=15%  Similarity=0.209  Sum_probs=198.3

Q ss_pred             ecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCCEEEEeeC
Q 015490          110 RTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIFAAGSE  187 (406)
Q Consensus       110 ~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~  187 (406)
                      ..|+..-+.++|.|+|.+|++++ ++.+++|.-.... +..            ..+. +...|.+++.  ++.+|++|+.
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~-e~P------------~ti~~~g~~v~~ia~--~s~~f~~~s~   74 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE-EEP------------ETIDISGELVSSIAC--YSNHFLTGSE   74 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc-cCC------------chhhccCceeEEEee--cccceEEeec
Confidence            46888899999999999988886 9999998755431 111            1122 3445555554  4558999999


Q ss_pred             CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCc
Q 015490          188 NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNED  267 (406)
Q Consensus       188 dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (406)
                      +++|.+|.+..++.-..+..-.-++++++++-+|++++.||+|-.|++-++.+......+.++ ..++.++.|+|.+.  
T Consensus        75 ~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh-~apVl~l~~~p~~~--  151 (933)
T KOG1274|consen   75 QNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGH-DAPVLQLSYDPKGN--  151 (933)
T ss_pred             cceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeeccc-CCceeeeeEcCCCC--
Confidence            999999999888766555555668999999999999999999999999999988888888765 56788999999998  


Q ss_pred             eEEEEEEEcCCCcEEEEEeCCCceEEEEeeec--------CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEee
Q 015490          268 YVLYIAAITDRGASIVTWNTTTWKRIRTKQVV--------REPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVK  339 (406)
Q Consensus       268 ~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--------~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  339 (406)
                          ++++..-||.|++||+.++.+..++..-        ...+..++|+|+|..+++.+.|+.|.+|+..++.....+.
T Consensus       152 ----fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr  227 (933)
T KOG1274|consen  152 ----FLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR  227 (933)
T ss_pred             ----EEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeec
Confidence                4666678999999999998876665432        2456789999998888888899999999999999888875


Q ss_pred             ccc-ccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490          340 KAH-LGIVTALAFSYDSRALVSASMDSSVRVTVIED  374 (406)
Q Consensus       340 ~~~-~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~  374 (406)
                      ..+ ...+..++|+|+|+|||+++.||.|.|||+++
T Consensus       228 ~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  228 DKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             ccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            433 34489999999999999999999999999995

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=7.5e-24  Score=174.13  Aligned_cols=255  Identities=15%  Similarity=0.243  Sum_probs=208.4

Q ss_pred             ccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCC
Q 015490          103 DQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGT  180 (406)
Q Consensus       103 ~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~  180 (406)
                      .+.++.+.||.+.|..++.......+.+++ |.+.+||.++              ...++..+.+| +.|+++.|++.+.
T Consensus       138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~E--------------sg~CL~~Y~GH~GSVNsikfh~s~~  203 (481)
T KOG0300|consen  138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLE--------------SGACLATYTGHTGSVNSIKFHNSGL  203 (481)
T ss_pred             EeehhhhcccccceeeehhhcCCcceeecccccceeEEeec--------------cccceeeecccccceeeEEeccccc
Confidence            466778999999999999988777666665 9999998877              55566666666 8999999999999


Q ss_pred             EEEEeeCCCeEEEEeC------CC----------------------------------cceEeeeeccCCceeEEEEccC
Q 015490          181 IFAAGSENGNLRVFKW------PS----------------------------------LEIILNESEAHASVKDLSFSPD  220 (406)
Q Consensus       181 ~l~~~~~dg~i~vwd~------~~----------------------------------~~~~~~~~~~~~~i~~~~~s~~  220 (406)
                      ++++++.|++-+||..      ..                                  ..++..+.+|...|.+..|...
T Consensus       204 L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~g  283 (481)
T KOG0300|consen  204 LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAG  283 (481)
T ss_pred             eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcC
Confidence            9999999999999972      10                                  0123456677788999999999


Q ss_pred             CCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc-eEEEEeeec
Q 015490          221 GKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW-KRIRTKQVV  299 (406)
Q Consensus       221 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~  299 (406)
                      |+.+++++.|.+..+||+++++.+..+.+|.. ..+.++-+|..+      ++++.+.|.+.++||.+.. ..+..|++|
T Consensus       284 g~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~-ELtHcstHptQr------LVvTsSrDtTFRLWDFReaI~sV~VFQGH  356 (481)
T KOG0300|consen  284 GQQMVTASWDRTANLWDVETGEVVNILTGHDS-ELTHCSTHPTQR------LVVTSSRDTTFRLWDFREAIQSVAVFQGH  356 (481)
T ss_pred             cceeeeeeccccceeeeeccCceeccccCcch-hccccccCCcce------EEEEeccCceeEeccchhhcceeeeeccc
Confidence            99999999999999999999999999987644 466777888776      5667789999999999843 457889999


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCce-EEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCC
Q 015490          300 REPVSSFNVSADGKLLAVGTASGDISIIDSSSLQ-VRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKS  378 (406)
Q Consensus       300 ~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~  378 (406)
                      ...|+++.|.-+. .+++|+.|.+|++||+++.+ ++.++.  ...+++.++.+..+..++.--.+..|++||+.. ..+
T Consensus       357 tdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR--tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG-~Rl  432 (481)
T KOG0300|consen  357 TDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR--TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNG-NRL  432 (481)
T ss_pred             ccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee--cCCccceeEeecCCceEEeccCCceEEEEecCC-Ccc
Confidence            9999999998765 57899999999999999865 556664  667899999998888888888888999999954 344


Q ss_pred             CCch
Q 015490          379 GGLN  382 (406)
Q Consensus       379 ~~~~  382 (406)
                      ..+|
T Consensus       433 aRlP  436 (481)
T KOG0300|consen  433 ARLP  436 (481)
T ss_pred             ccCC
Confidence            4444

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=1.3e-25  Score=202.63  Aligned_cols=236  Identities=19%  Similarity=0.293  Sum_probs=205.8

Q ss_pred             eEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecc-cccCcEEEEEECCCCCEEEE
Q 015490          107 AELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQL-ENVGQQLALTFDSEGTIFAA  184 (406)
Q Consensus       107 ~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~  184 (406)
                      +.+..|...|.++..-..++.+++|+ +..+.+|.+...  .            .+..+ .|..+|.++.|+++..+|++
T Consensus        22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp--~------------~i~S~~~hespIeSl~f~~~E~Llaa   87 (825)
T KOG0267|consen   22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP--N------------AITSLTGHESPIESLTFDTSERLLAA   87 (825)
T ss_pred             hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCC--c------------hhheeeccCCcceeeecCcchhhhcc
Confidence            34567888999999877778888887 555567655421  1            11122 35589999999999999999


Q ss_pred             eeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCC
Q 015490          185 GSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLN  264 (406)
Q Consensus       185 ~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (406)
                      |+.+|+|++||++..+.++.+.+|...+.++.|+|-+.++++++.|+.+++||.+...+.+.+.. +...+..++|+|+|
T Consensus        88 gsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s-~~~vv~~l~lsP~G  166 (825)
T KOG0267|consen   88 GSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS-HTRVVDVLRLSPDG  166 (825)
T ss_pred             cccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC-CcceeEEEeecCCC
Confidence            99999999999999999999999999999999999999999999999999999998889888887 66778999999999


Q ss_pred             CCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeeccccc
Q 015490          265 NEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLG  344 (406)
Q Consensus       265 ~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  344 (406)
                      +      +.+.+++|..+++||...++....|..|.+.+.++.|+|..-+++.|+.|+++++||+++.+.+.... ....
T Consensus       167 r------~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~-~~~~  239 (825)
T KOG0267|consen  167 R------WVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK-PETD  239 (825)
T ss_pred             c------eeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccC-CccC
Confidence            8      57888889999999999999999999999999999999999999999999999999999999988886 5678


Q ss_pred             ceEEEEEcCCCCeEEEEECC
Q 015490          345 IVTALAFSYDSRALVSASMD  364 (406)
Q Consensus       345 ~v~~~~~sp~~~~l~s~s~d  364 (406)
                      .|.+..|+|++..+++|..+
T Consensus       240 ~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  240 GVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             CceeeeecCCceeeecCchh
Confidence            89999999999988887544

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=1.9e-22  Score=165.39  Aligned_cols=280  Identities=11%  Similarity=0.068  Sum_probs=202.4

Q ss_pred             cccccccccCCCCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cC
Q 015490           56 DEAVADKSDDIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QN  134 (406)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~  134 (406)
                      ++.++...+. +..+.++++.-.|        .+.++.++..       .+...-.|..++.+++|.++.. +++|+ |+
T Consensus        13 ~d~IS~v~f~-~~~~~LLvssWDg--------slrlYdv~~~-------~l~~~~~~~~plL~c~F~d~~~-~~~G~~dg   75 (323)
T KOG1036|consen   13 EDGISSVKFS-PSSSDLLVSSWDG--------SLRLYDVPAN-------SLKLKFKHGAPLLDCAFADEST-IVTGGLDG   75 (323)
T ss_pred             hhceeeEEEc-CcCCcEEEEeccC--------cEEEEeccch-------hhhhheecCCceeeeeccCCce-EEEeccCc
Confidence            3455566666 4555556554333        3455554443       2233345899999999998654 55555 99


Q ss_pred             CeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeE
Q 015490          135 SCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKD  214 (406)
Q Consensus       135 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~  214 (406)
                      .++.++++....              .+...|...+.|+.+++....+++|+.|++|++||.+.......+. ....|.+
T Consensus        76 ~vr~~Dln~~~~--------------~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~  140 (323)
T KOG1036|consen   76 QVRRYDLNTGNE--------------DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYC  140 (323)
T ss_pred             eEEEEEecCCcc--------------eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEE
Confidence            999988875432              2223477899999999988889999999999999998744443333 3337888


Q ss_pred             EEEccCCCEEEEEeCCCCEEEEEcCCCeeeeec-ccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc---
Q 015490          215 LSFSPDGKFLVSLGNRGPGRVWDLASSAVATPL-AKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW---  290 (406)
Q Consensus       215 ~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~---  290 (406)
                      +..+  ++.|++|+.|..+.+||+++....... ...-...++++++.|++..      .+.++-+|.|.+=.++..   
T Consensus       141 ~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eG------y~~sSieGRVavE~~d~s~~~  212 (323)
T KOG1036|consen  141 MDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEG------YVVSSIEGRVAVEYFDDSEEA  212 (323)
T ss_pred             Eecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCc------eEEEeecceEEEEccCCchHH
Confidence            8775  668999999999999999986654422 2233456889999997765      344466888877665544   


Q ss_pred             -eEEEEeeecC---------CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEE
Q 015490          291 -KRIRTKQVVR---------EPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVS  360 (406)
Q Consensus       291 -~~~~~~~~~~---------~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s  360 (406)
                       +....|+.|.         .+|.+++|+|-...+|+|+.||.|.+||+.+.+.+..+. .....|.+++|+.+|..||.
T Consensus       213 ~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~-~~~~SI~slsfs~dG~~LAi  291 (323)
T KOG1036|consen  213 QSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLA-KYETSISSLSFSMDGSLLAI  291 (323)
T ss_pred             hhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhcc-CCCCceEEEEeccCCCeEEE
Confidence             3445566663         378999999999999999999999999999999998886 45677999999999999998


Q ss_pred             EEC-----CCc-------EEEEEecCCc
Q 015490          361 ASM-----DSS-------VRVTVIEDKK  376 (406)
Q Consensus       361 ~s~-----dg~-------i~iw~~~~~~  376 (406)
                      ++.     ...       |.|.++.+.+
T Consensus       292 a~sy~ye~~~~~~~~~~~i~I~~l~d~e  319 (323)
T KOG1036|consen  292 ASSYQYERADTPTHERNAIFIRDLTDYE  319 (323)
T ss_pred             EechhhhcCCCCCCCCCceEEEeccccc
Confidence            862     122       6676665543

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.92  E-value=3.3e-22  Score=183.63  Aligned_cols=260  Identities=22%  Similarity=0.286  Sum_probs=204.3

Q ss_pred             cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCC-
Q 015490          104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGT-  180 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~-  180 (406)
                      +.+.+++++...|+++.=+|--+.++.|. +|.+.|+++.              ..+.+..+++. +.|+.++|..||+ 
T Consensus       193 K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK--------------~dkil~sFk~d~g~VtslSFrtDG~p  258 (910)
T KOG1539|consen  193 KVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLK--------------FDKILMSFKQDWGRVTSLSFRTDGNP  258 (910)
T ss_pred             cEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcc--------------cCcEEEEEEccccceeEEEeccCCCe
Confidence            48899999999999999999988888887 8888887766              44556667775 9999999999995 


Q ss_pred             EEEEeeCCCeEEEEeCCCcceEeeeec-cCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCee----eee---------
Q 015490          181 IFAAGSENGNLRVFKWPSLEIILNESE-AHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAV----ATP---------  246 (406)
Q Consensus       181 ~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~----~~~---------  246 (406)
                      .+++|+..|.+.+||++..+....+.. |.+.|....|.|....+++++.|+.+++|=..++.-    ++.         
T Consensus       259 ~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~  338 (910)
T KOG1539|consen  259 LLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPS  338 (910)
T ss_pred             eEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCch
Confidence            677778889999999998887776664 446888888888888888888888877763321100    000         


Q ss_pred             --------------------------------------------------------------------------------
Q 015490          247 --------------------------------------------------------------------------------  246 (406)
Q Consensus       247 --------------------------------------------------------------------------------  246 (406)
                                                                                                      
T Consensus       339 ~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h  418 (910)
T KOG1539|consen  339 CIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAH  418 (910)
T ss_pred             heeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEe
Confidence                                                                                            


Q ss_pred             --------------------cccC----CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEe---eec
Q 015490          247 --------------------LAKE----NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTK---QVV  299 (406)
Q Consensus       247 --------------------~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~---~~~  299 (406)
                                          +...    .+..+.+++.++.|+      .+..|...|.|-+|++++|-....+   ..|
T Consensus       419 ~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN------F~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah  492 (910)
T KOG1539|consen  419 KGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN------FVFIGYSKGTIDRFNMQSGIHRKSFGDSPAH  492 (910)
T ss_pred             cCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCc------eEEEeccCCeEEEEEcccCeeecccccCccc
Confidence                                0000    112345666666666      3455677899999999999888887   578


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEee----------------------------------------
Q 015490          300 REPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVK----------------------------------------  339 (406)
Q Consensus       300 ~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----------------------------------------  339 (406)
                      ..+|+.++...-++.+++++.+|.+.+||..+...+..+.                                        
T Consensus       493 ~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f  572 (910)
T KOG1539|consen  493 KGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREF  572 (910)
T ss_pred             cCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHh
Confidence            8999999999999999999999999999987655433322                                        


Q ss_pred             cccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCchH
Q 015490          340 KAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLNL  383 (406)
Q Consensus       340 ~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~  383 (406)
                      .+|...|++++|||||++|++++.|++|++||+.++..+..+-+
T Consensus       573 ~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v  616 (910)
T KOG1539|consen  573 WGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV  616 (910)
T ss_pred             hccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec
Confidence            47999999999999999999999999999999999988766543

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.8e-23  Score=180.19  Aligned_cols=221  Identities=18%  Similarity=0.221  Sum_probs=178.8

Q ss_pred             cCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCCEEEEeeCC
Q 015490          111 TDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIFAAGSEN  188 (406)
Q Consensus       111 ~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~d  188 (406)
                      --+++|.|++-+|+|.+|++|+ .+.+.+|.+.  ++..            +..+. |-..|+|+.|+.||.+|++|+.|
T Consensus        79 v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWels--sG~L------------L~v~~aHYQ~ITcL~fs~dgs~iiTgskD  144 (476)
T KOG0646|consen   79 VLPGPVHALASSNLGYFLLAGTISGNLYLWELS--SGIL------------LNVLSAHYQSITCLKFSDDGSHIITGSKD  144 (476)
T ss_pred             ccccceeeeecCCCceEEEeecccCcEEEEEec--cccH------------HHHHHhhccceeEEEEeCCCcEEEecCCC
Confidence            3468899999999999999986 7766665544  3443            33333 44899999999999999999999


Q ss_pred             CeEEEEeCC---------CcceEeeeeccCCceeEEEEccC--CCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEE
Q 015490          189 GNLRVFKWP---------SLEIILNESEAHASVKDLSFSPD--GKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFAS  257 (406)
Q Consensus       189 g~i~vwd~~---------~~~~~~~~~~~~~~i~~~~~s~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  257 (406)
                      |.|.+|.+.         +-+....+..|.-+|+++...+.  ..+|+++|.|.++++||+..+..+..+..  ...+.+
T Consensus       145 g~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f--p~si~a  222 (476)
T KOG0646|consen  145 GAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF--PSSIKA  222 (476)
T ss_pred             ccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec--CCccee
Confidence            999999872         23456667777779999998765  34899999999999999999998887764  345889


Q ss_pred             EEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCce----------------EEEEeeecCC--CeEEEEEcCCCCEEEEEe
Q 015490          258 CRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK----------------RIRTKQVVRE--PVSSFNVSADGKLLAVGT  319 (406)
Q Consensus       258 ~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~----------------~~~~~~~~~~--~i~~~~~sp~~~~l~~~~  319 (406)
                      ++.+|.++.      +..|..+|.|.+.++....                ....+.+|.+  .|+|++++-||..|++|+
T Consensus       223 v~lDpae~~------~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd  296 (476)
T KOG0646|consen  223 VALDPAERV------VYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGD  296 (476)
T ss_pred             EEEcccccE------EEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeC
Confidence            999999883      5567889999988875422                3556677776  999999999999999999


Q ss_pred             CCCcEEEEECCCceEEEEeecccccceEEEEEcCC
Q 015490          320 ASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYD  354 (406)
Q Consensus       320 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~  354 (406)
                      .||.|.|||+.+.++++++. ...++|+.+.+.|-
T Consensus       297 ~dg~VcvWdi~S~Q~iRtl~-~~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  297 EDGKVCVWDIYSKQCIRTLQ-TSKGPVTNLQINPL  330 (476)
T ss_pred             CCCCEEEEecchHHHHHHHh-hhccccceeEeecc
Confidence            99999999999999998885 36788999988553

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=2.5e-22  Score=164.08  Aligned_cols=271  Identities=10%  Similarity=0.042  Sum_probs=204.5

Q ss_pred             CcccccccccCCCCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-c
Q 015490           55 KDEAVADKSDDIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-Q  133 (406)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~  133 (406)
                      +++.+....+++..+..+..+.        -.+.+.+++++... .+.+   .....|.++|.+++|+.||..+++|+ |
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~S--------WD~tVR~wevq~~g-~~~~---ka~~~~~~PvL~v~WsddgskVf~g~~D   93 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGS--------WDGTVRIWEVQNSG-QLVP---KAQQSHDGPVLDVCWSDDGSKVFSGGCD   93 (347)
T ss_pred             cccchheeEeccccCceEEecc--------cCCceEEEEEecCC-cccc---hhhhccCCCeEEEEEccCCceEEeeccC
Confidence            3456666777775555554332        34567788877653 2222   45667999999999999999999887 9


Q ss_pred             CCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCC--EEEEeeCCCeEEEEeCCCcceEeeeeccCCc
Q 015490          134 NSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGT--IFAAGSENGNLRVFKWPSLEIILNESEAHAS  211 (406)
Q Consensus       134 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  211 (406)
                      +.+++|++...              +..+.-.|.++|.++.|-+...  .|++|+.|.+|+.||.+....+..+.- ...
T Consensus        94 k~~k~wDL~S~--------------Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeR  158 (347)
T KOG0647|consen   94 KQAKLWDLASG--------------QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PER  158 (347)
T ss_pred             CceEEEEccCC--------------CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cce
Confidence            99999887742              3333334778999999987654  899999999999999998887766644 335


Q ss_pred             eeEEEEccCCCEEEEEeCCCCEEEEEcCCCee-eeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc
Q 015490          212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAV-ATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW  290 (406)
Q Consensus       212 i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~  290 (406)
                      ++++..-  ..+++++..++.|.+|+++.+.. .+.........+++++..++...      .+.|+-.|.+.+..++.+
T Consensus       159 vYa~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~------~alGsiEGrv~iq~id~~  230 (347)
T KOG0647|consen  159 VYAADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDG------FALGSIEGRVAIQYIDDP  230 (347)
T ss_pred             eeehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCc------eEeeeecceEEEEecCCC
Confidence            6666553  34788888899999999976543 33344444556889999998885      256677888888877765


Q ss_pred             --eEEEEeeecCC---------CeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEE
Q 015490          291 --KRIRTKQVVRE---------PVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALV  359 (406)
Q Consensus       291 --~~~~~~~~~~~---------~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  359 (406)
                        +.-..+++|..         .|.+++|+|.-..|++++.||++.+||-+....+.... .|..+|++..|+.+|.+++
T Consensus       231 ~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~-~~~qpItcc~fn~~G~ifa  309 (347)
T KOG0647|consen  231 NPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSE-THPQPITCCSFNRNGSIFA  309 (347)
T ss_pred             CccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccC-cCCCccceeEecCCCCEEE
Confidence              55556677752         47789999999999999999999999998877777765 7999999999999999887


Q ss_pred             EE
Q 015490          360 SA  361 (406)
Q Consensus       360 s~  361 (406)
                      -+
T Consensus       310 YA  311 (347)
T KOG0647|consen  310 YA  311 (347)
T ss_pred             EE
Confidence            54

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.92  E-value=8.4e-24  Score=181.73  Aligned_cols=205  Identities=16%  Similarity=0.265  Sum_probs=167.4

Q ss_pred             ccccCcEEEEEECCCC-CEEEEeeCCCeEEEEeCCCcc----------eEeeeeccCCceeEEEEccCCC-EEEEEeCCC
Q 015490          164 LENVGQQLALTFDSEG-TIFAAGSENGNLRVFKWPSLE----------IILNESEAHASVKDLSFSPDGK-FLVSLGNRG  231 (406)
Q Consensus       164 ~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~vwd~~~~~----------~~~~~~~~~~~i~~~~~s~~~~-~l~s~s~d~  231 (406)
                      +.|.+.|+.+.+-|+. ..+|+++..+.|.|||..+-.          .-..+.+|...-++++|++... .|++++.|+
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence            4577899999999965 677788889999999984322          1235677777678899998644 799999999


Q ss_pred             CEEEEEcCCCee------eeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC--CceEEEEeeecCCCe
Q 015490          232 PGRVWDLASSAV------ATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT--TWKRIRTKQVVREPV  303 (406)
Q Consensus       232 ~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~--~~~~~~~~~~~~~~i  303 (406)
                      +|++||+.....      .......+...+..++|++....     ++++.+.|+.+.+||+|  +.++......|.+.+
T Consensus       201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-----lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~v  275 (422)
T KOG0264|consen  201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-----LFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEV  275 (422)
T ss_pred             cEEEEeccccccCCccccceEEeecCCcceehhhccccchh-----hheeecCCCeEEEEEcCCCCCCCcccccccCCce
Confidence            999999975433      12223356778999999999886     66777899999999999  566777788899999


Q ss_pred             EEEEEcC-CCCEEEEEeCCCcEEEEECCCce-EEEEeecccccceEEEEEcCC-CCeEEEEECCCcEEEEEecC
Q 015490          304 SSFNVSA-DGKLLAVGTASGDISIIDSSSLQ-VRTAVKKAHLGIVTALAFSYD-SRALVSASMDSSVRVTVIED  374 (406)
Q Consensus       304 ~~~~~sp-~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~sp~-~~~l~s~s~dg~i~iw~~~~  374 (406)
                      .|++|+| ++..||+|+.|++|.+||+++.. ++..+. +|...|.++.|||. ...|++++.|+.+.|||+..
T Consensus       276 n~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e-~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~  348 (422)
T KOG0264|consen  276 NCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE-GHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR  348 (422)
T ss_pred             eEEEeCCCCCceEEeccCCCcEEEeechhcccCceecc-CCCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence            9999999 66788999999999999999854 556664 89999999999996 46789999999999999975

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.92  E-value=2.6e-22  Score=180.79  Aligned_cols=252  Identities=12%  Similarity=0.153  Sum_probs=200.3

Q ss_pred             EEEEecCCCCccccceeEEecCCCCceE-EEEcc-CCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc
Q 015490           91 LSHFDFASNSLSDQPVAELRTDSDLPYR-MAIHP-HGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV  167 (406)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~sp-~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (406)
                      +..|+...+.+  .....+.+|.+.|.+ +++-+ ++-.+++|+ |..+.+|..+              ...++..+.+|
T Consensus        37 ~~vw~~~~~~~--l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~--------------~~~P~~~LkgH  100 (745)
T KOG0301|consen   37 VKVWAKKGKQY--LETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLS--------------QAEPLYTLKGH  100 (745)
T ss_pred             eeeeeccCccc--ccceecccCcceeeccceeccccCcceEeecccceEEEEecC--------------CCCchhhhhcc
Confidence            44455544333  234567778888777 88875 333466666 7777766555              34455555555


Q ss_pred             -CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeee
Q 015490          168 -GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATP  246 (406)
Q Consensus       168 -~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~  246 (406)
                       ..|.|++...++. +++|+.|.++++|..  +++...+.+|...|++++.-|++ .+++|+.|.+|++|.-  ++.+++
T Consensus       101 ~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~t  174 (745)
T KOG0301|consen  101 KSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKT  174 (745)
T ss_pred             ccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhh
Confidence             8899998888877 899999999999985  45566688999999999999988 7899999999999985  677888


Q ss_pred             cccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 015490          247 LAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISI  326 (406)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i  326 (406)
                      +.+ |...|+.+++-+++.       +++++.||.|++|++ ++..+.+..+|...+++++..+++..++++++|++++|
T Consensus       175 f~g-HtD~VRgL~vl~~~~-------flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlri  245 (745)
T KOG0301|consen  175 FSG-HTDCVRGLAVLDDSH-------FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRI  245 (745)
T ss_pred             hcc-chhheeeeEEecCCC-------eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEE
Confidence            887 566799999999876       366789999999999 77889999999999999998888899999999999999


Q ss_pred             EECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490          327 IDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       327 ~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      |+..  .+...+. .....|+++.+-++|. +++|+.||.||||..+..+.
T Consensus       246 W~~~--e~~q~I~-lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R~  292 (745)
T KOG0301|consen  246 WKKD--ECVQVIT-LPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDRK  292 (745)
T ss_pred             eecC--ceEEEEe-cCccceEEEEEeeCCC-EEEeccCceEEEEEeccccc
Confidence            9987  6666664 2344799999998887 77888999999999876544

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=4.1e-22  Score=163.27  Aligned_cols=250  Identities=16%  Similarity=0.227  Sum_probs=182.7

Q ss_pred             ecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECC--CCCEEEEe
Q 015490          110 RTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDS--EGTIFAAG  185 (406)
Q Consensus       110 ~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~--~g~~l~~~  185 (406)
                      .+|.+-|.++.|.+.|+++++++ |++++||+.+..++.-.          +....+ |.+.|..+.|.+  -|+.+|++
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~----------~Ts~Wrah~~Si~rV~WAhPEfGqvvA~c   79 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWS----------CTSSWRAHDGSIWRVVWAHPEFGQVVATC   79 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceE----------EeeeEEecCCcEEEEEecCccccceEEEE
Confidence            47889999999999999999997 99999998754433211          111222 457899999976  57999999


Q ss_pred             eCCCeEEEEeCC---------CcceEeeeeccCCceeEEEEccC--CCEEEEEeCCCCEEEEEcCCCee------eeecc
Q 015490          186 SENGNLRVFKWP---------SLEIILNESEAHASVKDLSFSPD--GKFLVSLGNRGPGRVWDLASSAV------ATPLA  248 (406)
Q Consensus       186 ~~dg~i~vwd~~---------~~~~~~~~~~~~~~i~~~~~s~~--~~~l~s~s~d~~i~iwd~~~~~~------~~~~~  248 (406)
                      +.|+++.||.=.         .......+......|+++.|.|.  |-.+++++.||.+|||+.-..-.      ...+.
T Consensus        80 S~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~  159 (361)
T KOG2445|consen   80 SYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQ  159 (361)
T ss_pred             ecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhh
Confidence            999999999742         11233445556669999999984  66899999999999998754322      12221


Q ss_pred             ------cCCcceEEEEEEEcCCCCceEEEEEEEcCC----CcEEEEEeCCC----ceEEEEeeecCCCeEEEEEcCC---
Q 015490          249 ------KENDELFASCRFSPLNNEDYVLYIAAITDR----GASIVTWNTTT----WKRIRTKQVVREPVSSFNVSAD---  311 (406)
Q Consensus       249 ------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~i~~~d~~~----~~~~~~~~~~~~~i~~~~~sp~---  311 (406)
                            +.+.....|+.|+|..-+...  +++...+    -+.+++|....    ...+.++..|..+|+.++|.|+   
T Consensus       160 ~~~~pp~~~~~~~~CvsWn~sr~~~p~--iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr  237 (361)
T KOG2445|consen  160 NVIDPPGKNKQPCFCVSWNPSRMHEPL--IAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGR  237 (361)
T ss_pred             hccCCcccccCcceEEeeccccccCce--EEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCC
Confidence                  223445678999976544222  2222222    24677776532    3456677788999999999995   


Q ss_pred             -CCEEEEEeCCCcEEEEECCCc--------------------eEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEE
Q 015490          312 -GKLLAVGTASGDISIIDSSSL--------------------QVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVT  370 (406)
Q Consensus       312 -~~~l~~~~~dg~i~i~d~~~~--------------------~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw  370 (406)
                       -..||+++.|| |+||.+...                    +.+..+ ..|.+.|+.+.|.-.|..|++.+.||+||+|
T Consensus       238 ~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~-~~H~~~VWrv~wNmtGtiLsStGdDG~VRLW  315 (361)
T KOG2445|consen  238 SYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSEL-DDHNGEVWRVRWNMTGTILSSTGDDGCVRLW  315 (361)
T ss_pred             ceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeec-cCCCCceEEEEEeeeeeEEeecCCCceeeeh
Confidence             34799999999 999998731                    123334 4899999999999999999999999999999


Q ss_pred             Eec
Q 015490          371 VIE  373 (406)
Q Consensus       371 ~~~  373 (406)
                      ...
T Consensus       316 kan  318 (361)
T KOG2445|consen  316 KAN  318 (361)
T ss_pred             hhh
Confidence            864

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.91  E-value=4.6e-23  Score=167.82  Aligned_cols=207  Identities=23%  Similarity=0.294  Sum_probs=167.5

Q ss_pred             ccCcEEEEEECC-CCCEEEEeeCCCeEEEEeCCCcc----------eEe-----eeeccCCceeEEEEcc-CCCEEEEEe
Q 015490          166 NVGQQLALTFDS-EGTIFAAGSENGNLRVFKWPSLE----------IIL-----NESEAHASVKDLSFSP-DGKFLVSLG  228 (406)
Q Consensus       166 ~~~~v~~~~~s~-~g~~l~~~~~dg~i~vwd~~~~~----------~~~-----~~~~~~~~i~~~~~s~-~~~~l~s~s  228 (406)
                      |.+.|+++...+ .|+++++|+.||.|.+||+++-.          ...     .-.+|.-.|.++.|-| |...+.+++
T Consensus        42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssS  121 (397)
T KOG4283|consen   42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSS  121 (397)
T ss_pred             CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeeccc
Confidence            557788888877 68999999999999999996432          011     0112333899999998 555788889


Q ss_pred             CCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEE
Q 015490          229 NRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNV  308 (406)
Q Consensus       229 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~  308 (406)
                      -|.++++||..+.+....+...  ..|.+-+++|-...   -.+++++..+..|++-|+.+|.....+.+|...|.++.|
T Consensus       122 FDhtlKVWDtnTlQ~a~~F~me--~~VYshamSp~a~s---HcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~W  196 (397)
T KOG4283|consen  122 FDHTLKVWDTNTLQEAVDFKME--GKVYSHAMSPMAMS---HCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEW  196 (397)
T ss_pred             ccceEEEeecccceeeEEeecC--ceeehhhcChhhhc---ceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEe
Confidence            9999999999998888777643  45778888887653   246788889999999999999999999999999999999


Q ss_pred             cCCCCE-EEEEeCCCcEEEEECCCc-eEEEEe-------------ecccccceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490          309 SADGKL-LAVGTASGDISIIDSSSL-QVRTAV-------------KKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       309 sp~~~~-l~~~~~dg~i~i~d~~~~-~~~~~~-------------~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~  373 (406)
                      +|...+ |++|+.||.|++||++.. .+...+             ...|.+.|.+++|+.++.++++++.|..+++|+..
T Consensus       197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~  276 (397)
T KOG4283|consen  197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNME  276 (397)
T ss_pred             ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecc
Confidence            998775 678888999999999743 122111             13688899999999999999999999999999998


Q ss_pred             CCcC
Q 015490          374 DKKK  377 (406)
Q Consensus       374 ~~~~  377 (406)
                      +|+.
T Consensus       277 ~G~n  280 (397)
T KOG4283|consen  277 SGRN  280 (397)
T ss_pred             cCcc
Confidence            8764

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.91  E-value=1.5e-22  Score=166.82  Aligned_cols=257  Identities=16%  Similarity=0.180  Sum_probs=188.0

Q ss_pred             eEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEEC-------CCCCEEEEeeCC
Q 015490          117 YRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFD-------SEGTIFAAGSEN  188 (406)
Q Consensus       117 ~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-------~~g~~l~~~~~d  188 (406)
                      ..+.|+|||..|++.+ ++.+++|.+............................|...+|-       |+..++++.+.+
T Consensus        53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~  132 (406)
T KOG2919|consen   53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD  132 (406)
T ss_pred             ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence            5679999999999887 99999998765432221111111011112222233556666663       677899999999


Q ss_pred             CeEEEEeCCCcceEeeeecc--CC---ceeEEEEccCCCEEEEEeCCCCEEEEEc-CCCeeeeec------ccCCcceEE
Q 015490          189 GNLRVFKWPSLEIILNESEA--HA---SVKDLSFSPDGKFLVSLGNRGPGRVWDL-ASSAVATPL------AKENDELFA  256 (406)
Q Consensus       189 g~i~vwd~~~~~~~~~~~~~--~~---~i~~~~~s~~~~~l~s~s~d~~i~iwd~-~~~~~~~~~------~~~~~~~~~  256 (406)
                      .-|++||.-+|+....+..-  ..   ...+++|+|||.+|++| ....|++||+ +.|+.....      +......+.
T Consensus       133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giis  211 (406)
T KOG2919|consen  133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS  211 (406)
T ss_pred             CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceee
Confidence            99999999999877665432  22   56789999999999855 5679999999 555432211      122356788


Q ss_pred             EEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCC-ceE
Q 015490          257 SCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA-SGDISIIDSSS-LQV  334 (406)
Q Consensus       257 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~~-~~~  334 (406)
                      +++|+|....     ..+.++....+-+|.-..+.++..+-+|.+.|+.++|.++|+.|++|.. |..|..||++. ..+
T Consensus       212 c~a~sP~~~~-----~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p  286 (406)
T KOG2919|consen  212 CFAFSPMDSK-----TLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP  286 (406)
T ss_pred             eeeccCCCCc-----ceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch
Confidence            9999999886     5677778888888888888899999999999999999999999999987 77899999986 445


Q ss_pred             EEEeeccccc-ceEEEE--EcCCCCeEEEEECCCcEEEEEecC-CcCCCC
Q 015490          335 RTAVKKAHLG-IVTALA--FSYDSRALVSASMDSSVRVTVIED-KKKSGG  380 (406)
Q Consensus       335 ~~~~~~~~~~-~v~~~~--~sp~~~~l~s~s~dg~i~iw~~~~-~~~~~~  380 (406)
                      +..+. .|.+ .=..|.  ..|++++|++|+.||.|++||+++ ++.+..
T Consensus       287 v~~L~-rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv  335 (406)
T KOG2919|consen  287 VYALE-RHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSV  335 (406)
T ss_pred             hhhhh-hhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccc
Confidence            55554 4544 223444  467899999999999999999998 554433

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.91  E-value=3.8e-22  Score=162.10  Aligned_cols=273  Identities=16%  Similarity=0.231  Sum_probs=205.0

Q ss_pred             CccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-c--------CCeEEEEEecccccceeecceec
Q 015490           86 RNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-Q--------NSCRLFEWDEVENTEIRRLGVKI  156 (406)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~--------~~~~i~~~~~~~~~~~~~~~~~~  156 (406)
                      .|.+.+..++.+.+.+   ....+..|.+.|..++-+|..+.+++.. .        ....||.+....+....     .
T Consensus        39 dNqVhll~~d~e~s~l---~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~-----~  110 (370)
T KOG1007|consen   39 DNQVHLLRLDSEGSEL---LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNS-----S  110 (370)
T ss_pred             cceeEEEEecCccchh---hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcccc-----c
Confidence            4888999999988765   3346778899999999999877666543 2        12456665433222000     0


Q ss_pred             cceeeeccc--ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcce-Eeeee-----ccCCceeEEEEcc--CCCEEEE
Q 015490          157 SEKVLSQLE--NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEI-ILNES-----EAHASVKDLSFSP--DGKFLVS  226 (406)
Q Consensus       157 ~~~~~~~~~--~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~-~~~~~-----~~~~~i~~~~~s~--~~~~l~s  226 (406)
                      .-+++..+.  +.+.|.|+.|.|++..+++-. |..|.+|+++.+.. +..+.     .+....++-+|+|  |++.+++
T Consensus       111 tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t  189 (370)
T KOG1007|consen  111 TLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT  189 (370)
T ss_pred             hhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE
Confidence            112222222  347899999999999888765 78999999987665 32222     1233678889998  7888876


Q ss_pred             EeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc-eEEEEeeecCCCeEE
Q 015490          227 LGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW-KRIRTKQVVREPVSS  305 (406)
Q Consensus       227 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~i~~  305 (406)
                      .+ |+++..||+++.+....+...|+..+..+.|+|+.++     +++++++|+.|++||.+.- .++.++..|...+.+
T Consensus       190 t~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~-----~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~  263 (370)
T KOG1007|consen  190 TS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQH-----ILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWA  263 (370)
T ss_pred             eC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceE-----EEEEcCCCccEEEEeccCCCccccccCCCceEEEE
Confidence            65 7899999999999988898888889999999999886     7889999999999999864 468889999999999


Q ss_pred             EEEcCC-CCEEEEEeCCCcEEEEECCCce-----------------------------EEEEeecccccceEEEEEcCCC
Q 015490          306 FNVSAD-GKLLAVGTASGDISIIDSSSLQ-----------------------------VRTAVKKAHLGIVTALAFSYDS  355 (406)
Q Consensus       306 ~~~sp~-~~~l~~~~~dg~i~i~d~~~~~-----------------------------~~~~~~~~~~~~v~~~~~sp~~  355 (406)
                      +.|+|. .++|++|+.|..|.+|....-.                             .+.++ ..|...|.+++||.-.
T Consensus       264 VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ty-dehEDSVY~~aWSsad  342 (370)
T KOG1007|consen  264 VRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETY-DEHEDSVYALAWSSAD  342 (370)
T ss_pred             EEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccc-cccccceEEEeeccCC
Confidence            999994 4688899999999999764211                             11233 3688999999999855


Q ss_pred             C-eEEEEECCCcEEEEEecC
Q 015490          356 R-ALVSASMDSSVRVTVIED  374 (406)
Q Consensus       356 ~-~l~s~s~dg~i~iw~~~~  374 (406)
                      . .+++-|.||++.|=.+..
T Consensus       343 PWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  343 PWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             CeeEEEeccCceEEeecCCh
Confidence            4 567889999998877654

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=3.6e-23  Score=188.45  Aligned_cols=243  Identities=18%  Similarity=0.243  Sum_probs=184.1

Q ss_pred             ceEEEEccC-CCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecc-cccCcEEEEEECCC-CCEEEEeeCCCeE
Q 015490          116 PYRMAIHPH-GDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQL-ENVGQQLALTFDSE-GTIFAAGSENGNL  191 (406)
Q Consensus       116 v~~~~~sp~-~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~-g~~l~~~~~dg~i  191 (406)
                      +..+.|+.. .++|++++ .+.+.+|++....           ..+.+..+ +|...++++.|++. ..+|++|+.||+|
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~-----------rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~v  158 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSI-----------RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTV  158 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCccc-----------cchhhhHhhhhccceeeeeeccCCccEEEecCCCceE
Confidence            456677643 34666665 7888888776521           12222333 35578999999984 4789999999999


Q ss_pred             EEEeCCCcceEeeeeccCCceeEEEEcc-CCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEE
Q 015490          192 RVFKWPSLEIILNESEAHASVKDLSFSP-DGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVL  270 (406)
Q Consensus       192 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  270 (406)
                      ++||++..+....+.+....|++++|+| .+..++++.+.|.+.+||++...........|.+++.++.|+|++.     
T Consensus       159 K~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~-----  233 (839)
T KOG0269|consen  159 KCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE-----  233 (839)
T ss_pred             EEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCc-----
Confidence            9999998888888877667999999999 5678999999999999999976544333334567899999999665     


Q ss_pred             EEEEEcCCCcEEEEEeCCCceEEEEeeec-CCCeEEEEEcCCCC-EEEEEeC--CCcEEEEECCCceEEEEeecccccce
Q 015490          271 YIAAITDRGASIVTWNTTTWKRIRTKQVV-REPVSSFNVSADGK-LLAVGTA--SGDISIIDSSSLQVRTAVKKAHLGIV  346 (406)
Q Consensus       271 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~i~~~~~sp~~~-~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~v  346 (406)
                       ++|+|+.|+.|++||+.+.+.-.....+ ..++.++.|-|+.. .||+++.  |-.|+|||++..-........|...+
T Consensus       234 -~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~v  312 (839)
T KOG0269|consen  234 -WLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSV  312 (839)
T ss_pred             -eeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccc
Confidence             6789999999999999876543333333 37899999999765 4666554  78899999986554444334899999


Q ss_pred             EEEEEcC-CCCeEEEEECCCcEEEEEecCC
Q 015490          347 TALAFSY-DSRALVSASMDSSVRVTVIEDK  375 (406)
Q Consensus       347 ~~~~~sp-~~~~l~s~s~dg~i~iw~~~~~  375 (406)
                      +.++|.. |...|.+++.||+|..-.+++.
T Consensus       313 t~i~W~~~d~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  313 TGIAWDSGDRINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             cceeccCCCceeeEeecCccHHHHhhhhcc
Confidence            9999976 4567889999999877666654

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.91  E-value=5.7e-22  Score=161.22  Aligned_cols=274  Identities=12%  Similarity=0.138  Sum_probs=199.0

Q ss_pred             CCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCC----eEEEEecCCeEEEEEecccccceeecceeccc
Q 015490           83 SGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGD----GIICALQNSCRLFEWDEVENTEIRRLGVKISE  158 (406)
Q Consensus        83 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~----~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  158 (406)
                      .-..|++.+..++.++..+....-   -.|.-+++.+.|.|+..    .|++.++..+|+|.....+........+.   
T Consensus        69 Ee~~Nkvqiv~ld~~s~e~~~~a~---fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~---  142 (364)
T KOG0290|consen   69 EEYNNKVQIVQLDEDSGELVEDAN---FDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLN---  142 (364)
T ss_pred             cccCCeeEEEEEccCCCceeccCC---CCCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhc---
Confidence            345689999999977655433222   47899999999999874    35555677889998875433222111110   


Q ss_pred             eeeecccccCcEEEEEECC-CCCEEEEeeCCCeEEEEeCCCcc---eEeeeeccCCceeEEEEccCCC-EEEEEeCCCCE
Q 015490          159 KVLSQLENVGQQLALTFDS-EGTIFAAGSENGNLRVFKWPSLE---IILNESEAHASVKDLSFSPDGK-FLVSLGNRGPG  233 (406)
Q Consensus       159 ~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i  233 (406)
                       .-+.-+...++++..|+. |-+++.+.+-|-+..|||++++.   ....+..|..+|.+++|...+. .+++.+.||.+
T Consensus       143 -~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSv  221 (364)
T KOG0290|consen  143 -NNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSV  221 (364)
T ss_pred             -cCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcE
Confidence             011223447889999987 66899999999999999999873   3556778888999999998654 78999999999


Q ss_pred             EEEEcCCCeeeeec-ccCC-cceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc-eEEEEeeecCCCeEEEEEcC
Q 015490          234 RVWDLASSAVATPL-AKEN-DELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW-KRIRTKQVVREPVSSFNVSA  310 (406)
Q Consensus       234 ~iwd~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~i~~~~~sp  310 (406)
                      |+||++..+....+ .... ..+...++|++...+    |++........|.+.|++.. .++.+++.|.+.|..++|.|
T Consensus       222 RmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpn----ymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaP  297 (364)
T KOG0290|consen  222 RMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPN----YMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAP  297 (364)
T ss_pred             EEEEecccccceEEecCCCCCCcceeeccCcCCch----HHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecC
Confidence            99999986654333 2222 455667888887775    44555566788999999864 56888999999999999999


Q ss_pred             C-CCEEEEEeCCCcEEEEECCCceE------EEEeecccccceEEEEEcCC-CCeEEEEECCCcEEEE
Q 015490          311 D-GKLLAVGTASGDISIIDSSSLQV------RTAVKKAHLGIVTALAFSYD-SRALVSASMDSSVRVT  370 (406)
Q Consensus       311 ~-~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~~v~~~~~sp~-~~~l~s~s~dg~i~iw  370 (406)
                      . ...|++++.|..+.+||+...-.      +..+  ...+.|+.++|++. +.+++.+. ++++.+-
T Consensus       298 hS~~hictaGDD~qaliWDl~q~~~~~~~dPilay--~a~~EVNqi~Ws~~~~Dwiai~~-~kkleiL  362 (364)
T KOG0290|consen  298 HSSSHICTAGDDCQALIWDLQQMPRENGEDPILAY--TAGGEVNQIQWSSSQPDWIAICF-GKKLEIL  362 (364)
T ss_pred             CCCceeeecCCcceEEEEecccccccCCCCchhhh--hccceeeeeeecccCCCEEEEEe-cCeeeEE
Confidence            5 56899999999999999975322      2222  25678999999974 56666654 4555543

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.91  E-value=1.1e-22  Score=176.47  Aligned_cols=245  Identities=13%  Similarity=0.172  Sum_probs=194.7

Q ss_pred             CCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeE
Q 015490          114 DLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNL  191 (406)
Q Consensus       114 ~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i  191 (406)
                      ..+.++.|+.....+++..  |..+++|.-+...++          ...+....+. .-.|++......++++|+..+.|
T Consensus        35 pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~----------Vp~~~k~~gd-~~~Cv~~~s~S~y~~sgG~~~~V  103 (673)
T KOG4378|consen   35 PGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPE----------VPRVRKLTGD-NAFCVACASQSLYEISGGQSGCV  103 (673)
T ss_pred             CcceeeeccccceEEEeecCCceeEEEecccCCCCc----------cceeeccccc-hHHHHhhhhcceeeeccCcCcee
Confidence            3488999988765433333  455555544433221          1112222222 34455555555899999999999


Q ss_pred             EEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEE
Q 015490          192 RVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY  271 (406)
Q Consensus       192 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  271 (406)
                      +|||++...+.+.+..|...|+++.++....+||+++..|.|.|..+.++.....+....+..++-+.|++..+.     
T Consensus       104 kiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~-----  178 (673)
T KOG4378|consen  104 KIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRF-----  178 (673)
T ss_pred             eehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccce-----
Confidence            999999777788888888999999999999999999999999999999998888888777778889999999885     


Q ss_pred             EEEEcCCCcEEEEEeCCCceEEEE-eeecCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEE
Q 015490          272 IAAITDRGASIVTWNTTTWKRIRT-KQVVREPVSSFNVSA-DGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTAL  349 (406)
Q Consensus       272 ~~~~~~~~~~i~~~d~~~~~~~~~-~~~~~~~i~~~~~sp-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~  349 (406)
                      ++.+.+.+|.|.+||.....+... ...|..+...+||+| +..+|++.+.|..|.+||.........+.  ...+...+
T Consensus       179 lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~--y~~Plstv  256 (673)
T KOG4378|consen  179 LLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT--YSHPLSTV  256 (673)
T ss_pred             eeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee--ecCCccee
Confidence            667778999999999988776554 356888999999999 45678888999999999999877777774  56689999


Q ss_pred             EEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490          350 AFSYDSRALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       350 ~~sp~~~~l~s~s~dg~i~iw~~~~~~  376 (406)
                      +|+++|.+|+.|+..|.|..||++..+
T Consensus       257 af~~~G~~L~aG~s~G~~i~YD~R~~k  283 (673)
T KOG4378|consen  257 AFSECGTYLCAGNSKGELIAYDMRSTK  283 (673)
T ss_pred             eecCCceEEEeecCCceEEEEecccCC
Confidence            999999999999999999999998654

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.91  E-value=4.6e-21  Score=166.90  Aligned_cols=279  Identities=18%  Similarity=0.178  Sum_probs=198.1

Q ss_pred             cccccccCCCCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCC-CCceEEEEccCCCeEEEEecCCe
Q 015490           58 AVADKSDDIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDS-DLPYRMAIHPHGDGIICALQNSC  136 (406)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~sp~~~~l~~~~~~~~  136 (406)
                      .+-...+.|-+.+.+++.|-           -+++-|+...+.+.. ....++.++ .-|.|++|.++|+.+-.-+++.+
T Consensus       202 ~v~~a~FHPtd~nliit~Gk-----------~H~~Fw~~~~~~l~k-~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i  269 (626)
T KOG2106|consen  202 VVFLATFHPTDPNLIITCGK-----------GHLYFWTLRGGSLVK-RQGIFEKREKKFVLCVTFLENGDVITGDSGGNI  269 (626)
T ss_pred             eEEEEEeccCCCcEEEEeCC-----------ceEEEEEccCCceEE-EeeccccccceEEEEEEEcCCCCEEeecCCceE
Confidence            33444555666677666542           267778887766533 233333332 67999999999984433236666


Q ss_pred             EEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc----------------
Q 015490          137 RLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLE----------------  200 (406)
Q Consensus       137 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~----------------  200 (406)
                      .||.-  .....           ..+.+.|.+.|.+++...+|.+| +|+.|..|..||-.-.+                
T Consensus       270 ~Iw~~--~~~~~-----------~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv  335 (626)
T KOG2106|consen  270 LIWSK--GTNRI-----------SKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTV  335 (626)
T ss_pred             EEEeC--CCceE-----------EeEeeecCCceEEEEEecCccEe-ecCccceEEeccccccccccccCchhcCCeeEE
Confidence            66544  32221           11223577999999999999766 59999999999831000                


Q ss_pred             ------------------------eEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEE
Q 015490          201 ------------------------IILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFA  256 (406)
Q Consensus       201 ------------------------~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~  256 (406)
                                              ......+|......++.+|+..++++++.|+.+++|+  ..+..-...  ...+..
T Consensus       336 ~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~--~~d~~~  411 (626)
T KOG2106|consen  336 AEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI--IEDPAE  411 (626)
T ss_pred             ecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE--ecCcee
Confidence                                    0112234555778899999999999999999999999  333332222  234577


Q ss_pred             EEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCc-eEE
Q 015490          257 SCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSL-QVR  335 (406)
Q Consensus       257 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~-~~~  335 (406)
                      ++.|+|.+ .      ++.+...|...+.|.++...+..... ..+++++.|+|+|.+||+|+.|+.|+||.+... ...
T Consensus       412 ~~~fhpsg-~------va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y  483 (626)
T KOG2106|consen  412 CADFHPSG-V------VAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKY  483 (626)
T ss_pred             EeeccCcc-e------EEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEE
Confidence            99999998 3      46667789999999999655555444 789999999999999999999999999998654 333


Q ss_pred             EEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490          336 TAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIED  374 (406)
Q Consensus       336 ~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~  374 (406)
                      ......+..+|+.+.||+|+++|.+-+.|-.|..|.-..
T Consensus       484 ~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~  522 (626)
T KOG2106|consen  484 SRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSE  522 (626)
T ss_pred             EEeeeecCceeEEeeecCCCceEEeccCceEEEEEcccc
Confidence            344334558899999999999999999999999994433

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.6e-21  Score=181.11  Aligned_cols=261  Identities=16%  Similarity=0.261  Sum_probs=197.7

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVEN  146 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~  146 (406)
                      ++.+++++|..|.          +..|+.....   .....+.-+...|.+++...  .+|++++ ++++.+|.++....
T Consensus        24 ~gefi~tcgsdg~----------ir~~~~~sd~---e~P~ti~~~g~~v~~ia~~s--~~f~~~s~~~tv~~y~fps~~~   88 (933)
T KOG1274|consen   24 DGEFICTCGSDGD----------IRKWKTNSDE---EEPETIDISGELVSSIACYS--NHFLTGSEQNTVLRYKFPSGEE   88 (933)
T ss_pred             CCCEEEEecCCCc----------eEEeecCCcc---cCCchhhccCceeEEEeecc--cceEEeeccceEEEeeCCCCCc
Confidence            6778888876664          3344433321   11222223777788887754  4777776 89999988875432


Q ss_pred             c-ceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEE
Q 015490          147 T-EIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLV  225 (406)
Q Consensus       147 ~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  225 (406)
                      . .+.+              ..-++++++|+.+|+++|.|+.|-.|++.++.+......+.+|..+|.++.|+|++++||
T Consensus        89 ~~iL~R--------------ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLA  154 (933)
T KOG1274|consen   89 DTILAR--------------FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLA  154 (933)
T ss_pred             cceeee--------------eeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEE
Confidence            2 1121              234688999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCEEEEEcCCCeeeeeccc-------CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeee
Q 015490          226 SLGNRGPGRVWDLASSAVATPLAK-------ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQV  298 (406)
Q Consensus       226 s~s~d~~i~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~  298 (406)
                      +.+.||.|++||+.++.....+..       .....+..++|+|++.+      ++....++.|++|+..++.....+..
T Consensus       155 vss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~------la~~~~d~~Vkvy~r~~we~~f~Lr~  228 (933)
T KOG1274|consen  155 VSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGT------LAVPPVDNTVKVYSRKGWELQFKLRD  228 (933)
T ss_pred             EEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCe------EEeeccCCeEEEEccCCceeheeecc
Confidence            999999999999999887666543       12445778999999875      23335689999999999998877754


Q ss_pred             c--CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEE
Q 015490          299 V--REPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVR  368 (406)
Q Consensus       299 ~--~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~  368 (406)
                      .  ...+..+.|+|+|+|||+++.||.|.|||.++...     ......|.+++|.|++..+-.-...|...
T Consensus       229 ~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~  295 (933)
T KOG1274|consen  229 KLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-----HEFKRAVCCEAWKPNANAITLITALGTLG  295 (933)
T ss_pred             cccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-----ccccceeEEEecCCCCCeeEEEeeccccc
Confidence            3  34489999999999999999999999999998322     12446799999999887654444444333

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.90  E-value=2.9e-22  Score=173.99  Aligned_cols=220  Identities=16%  Similarity=0.222  Sum_probs=180.5

Q ss_pred             CceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCCEEEEeeCCCeEE
Q 015490          115 LPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIFAAGSENGNLR  192 (406)
Q Consensus       115 ~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~i~  192 (406)
                      .-.|++......++++|+ .+.++||++...              .+.+.+. |...|+++.++....+||+++..|.|.
T Consensus        81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k--------------l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdii  146 (673)
T KOG4378|consen   81 NAFCVACASQSLYEISGGQSGCVKIWDLRAK--------------LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDII  146 (673)
T ss_pred             hHHHHhhhhcceeeeccCcCceeeehhhHHH--------------HHhhhccCCcceeEEEEecCCcceeEEeccCCcEE
Confidence            446666666668889888 889999887621              2222333 448899999999999999999999999


Q ss_pred             EEeCCCcceEeeeeccCC-ceeEEEEccCCCE-EEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEE
Q 015490          193 VFKWPSLEIILNESEAHA-SVKDLSFSPDGKF-LVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVL  270 (406)
Q Consensus       193 vwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~-l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  270 (406)
                      |..+.++.....+....+ .|+-+.|+|..+. |.+++++|.|.+||+....+...+...|..+...++|+|....    
T Consensus       147 ih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~----  222 (673)
T KOG4378|consen  147 IHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEA----  222 (673)
T ss_pred             EEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccc----
Confidence            999998887766655534 6779999998774 5667899999999999888888887778888899999999985    


Q ss_pred             EEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCce-EEEEeecccccceEEE
Q 015490          271 YIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQ-VRTAVKKAHLGIVTAL  349 (406)
Q Consensus       271 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~  349 (406)
                       ++++.+.|..|.+||.+..+....+.. ..+.+.++|+++|.+|+.|+..|.|..||++..+ ++..+ ..|...|+++
T Consensus       223 -l~vsVG~Dkki~~yD~~s~~s~~~l~y-~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~-sah~~sVt~v  299 (673)
T KOG4378|consen  223 -LLVSVGYDKKINIYDIRSQASTDRLTY-SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVR-SAHDASVTRV  299 (673)
T ss_pred             -eEEEecccceEEEeecccccccceeee-cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEe-eecccceeEE
Confidence             667778999999999998777776654 4688999999999999999999999999998755 45555 4899999999


Q ss_pred             EEcCCC
Q 015490          350 AFSYDS  355 (406)
Q Consensus       350 ~~sp~~  355 (406)
                      +|-|..
T Consensus       300 afq~s~  305 (673)
T KOG4378|consen  300 AFQPSP  305 (673)
T ss_pred             Eeeecc
Confidence            998764

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=3.7e-23  Score=196.29  Aligned_cols=279  Identities=18%  Similarity=0.276  Sum_probs=212.0

Q ss_pred             CcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCe---EEEEe--cCCeEEEEEecc-cccceeecceecc
Q 015490           84 GIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDG---IICAL--QNSCRLFEWDEV-ENTEIRRLGVKIS  157 (406)
Q Consensus        84 g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~---l~~~~--~~~~~i~~~~~~-~~~~~~~~~~~~~  157 (406)
                      +....++++.++........+++..+.. ...-+.++|.+.|..   |++|+  ||.+.+|+-+.. .+.         .
T Consensus        36 st~~slEifeld~~~~~~dlk~~~s~~s-~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~---------~  105 (1049)
T KOG0307|consen   36 STSASLEIFELDFSDESSDLKPVGSLQS-SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANA---------S  105 (1049)
T ss_pred             ccccccceeeecccCccccccccccccc-cccceeeeecccCCCccceeeccccCCceEEecchhhccCc---------c
Confidence            4566788888887665533334444432 345689999998877   56655  888888876642 111         1


Q ss_pred             ceeee-cccccCcEEEEEECCCC-CEEEEeeCCCeEEEEeCCCcceEeeeec--cCCceeEEEEccC-CCEEEEEeCCCC
Q 015490          158 EKVLS-QLENVGQQLALTFDSEG-TIFAAGSENGNLRVFKWPSLEIILNESE--AHASVKDLSFSPD-GKFLVSLGNRGP  232 (406)
Q Consensus       158 ~~~~~-~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~i~~~~~s~~-~~~l~s~s~d~~  232 (406)
                      ...+. .-.|++.|..+.|++.. ++||+|+.||.|.|||+.+.+.......  ..+.|.+++|+.. .+.|++++.+|.
T Consensus       106 ~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~  185 (1049)
T KOG0307|consen  106 EEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGR  185 (1049)
T ss_pred             hHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCC
Confidence            22222 23466999999999965 5999999999999999987665544422  2348999999875 446888889999


Q ss_pred             EEEEEcCCCeeeeecccCCc-ceEEEEEEEcCCCCceEEEEEEEc-CCCcEEEEEeCCCc-eEEEEeeecCCCeEEEEEc
Q 015490          233 GRVWDLASSAVATPLAKEND-ELFASCRFSPLNNEDYVLYIAAIT-DRGASIVTWNTTTW-KRIRTKQVVREPVSSFNVS  309 (406)
Q Consensus       233 i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~i~~~d~~~~-~~~~~~~~~~~~i~~~~~s  309 (406)
                      +.|||++..+.+..+..+.. ..+..++|+|+...  .+ ++++. +..-.|.+||+|.- .+++.+++|...|.++.|+
T Consensus       186 ~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aT--ql-~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc  262 (1049)
T KOG0307|consen  186 AVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHAT--QL-LVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWC  262 (1049)
T ss_pred             ceeccccCCCcccccccCCCccceeeeeeCCCCce--ee-eeecCCCCCceeEeecccccCCchhhhcccccceeeeccC
Confidence            99999999888777765444 34778999999875  23 33333 33468999998753 4678888999999999999


Q ss_pred             CCC-CEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCC-eEEEEECCCcEEEEEecCCc
Q 015490          310 ADG-KLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSR-ALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       310 p~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~s~dg~i~iw~~~~~~  376 (406)
                      +.+ ++|++++.|+.|.+|+.++++.+..+. ....++..+.|+|... .++.++.||.|.|+.+....
T Consensus       263 ~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p-~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  263 PQDPRLLLSSGKDNRIICWNPNTGEVLGELP-AQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CCCchhhhcccCCCCeeEecCCCceEeeecC-CCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            955 899999999999999999999999997 5778899999999655 78888999999999997655

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.90  E-value=1.1e-21  Score=176.78  Aligned_cols=258  Identities=21%  Similarity=0.258  Sum_probs=195.3

Q ss_pred             EecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCCEEEEee
Q 015490          109 LRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIFAAGS  186 (406)
Q Consensus       109 ~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~  186 (406)
                      +.||++.|+++.|+|.+..|++++ |.++.+|.-+..++--.....       +....+. .....+-|+|++..+++-+
T Consensus       263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vR-------lGe~gg~a~GF~g~lw~~n~~~ii~~g  335 (764)
T KOG1063|consen  263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVR-------LGEVGGSAGGFWGGLWSPNSNVIIAHG  335 (764)
T ss_pred             hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEE-------eecccccccceeeEEEcCCCCEEEEec
Confidence            349999999999999997666665 999999876665443332222       2222233 4578899999999999999


Q ss_pred             CCCeEEEEeCCCc---ceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCC----------------------
Q 015490          187 ENGNLRVFKWPSL---EIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASS----------------------  241 (406)
Q Consensus       187 ~dg~i~vwd~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~----------------------  241 (406)
                      ..|-.++|...+.   .....+.+|.+.|++++|+|.|.+|++.+.|.+-|+|-.-..                      
T Consensus       336 ~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~  415 (764)
T KOG1063|consen  336 RTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSF  415 (764)
T ss_pred             ccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeeh
Confidence            9999999983221   233456678889999999999999999999988877632100                      


Q ss_pred             -------------eeeeecc------------------------------------------------------------
Q 015490          242 -------------AVATPLA------------------------------------------------------------  248 (406)
Q Consensus       242 -------------~~~~~~~------------------------------------------------------------  248 (406)
                                   +..+.+.                                                            
T Consensus       416 vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~  495 (764)
T KOG1063|consen  416 VNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAA  495 (764)
T ss_pred             ccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccccc
Confidence                         0000000                                                            


Q ss_pred             --------------------------cCCcceEEEEEEEcCCCCceEEEEEEEcCC-----CcEEEEEeCCCceEEEEee
Q 015490          249 --------------------------KENDELFASCRFSPLNNEDYVLYIAAITDR-----GASIVTWNTTTWKRIRTKQ  297 (406)
Q Consensus       249 --------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~i~~~d~~~~~~~~~~~  297 (406)
                                                ..|+..+.+++.+|+++      +++++..     ...|++|+..++..+..+.
T Consensus       496 ~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn------liASaCKS~~~ehAvI~lw~t~~W~~~~~L~  569 (764)
T KOG1063|consen  496 APCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN------LIASACKSSLKEHAVIRLWNTANWLQVQELE  569 (764)
T ss_pred             CchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC------EEeehhhhCCccceEEEEEeccchhhhheec
Confidence                                      01455677888888887      3344332     4579999999999999999


Q ss_pred             ecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceE----EEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490          298 VVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQV----RTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       298 ~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~  373 (406)
                      .|.-.|+.++|||||++|++.+.|+++.+|.......    .... ..|..-|+++.|+|++.+++|+|.|.+|++|...
T Consensus       570 ~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~-k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~  648 (764)
T KOG1063|consen  570 GHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACL-KAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEP  648 (764)
T ss_pred             ccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccc-cccceEEEEcccCcccceeEEecCCceEEEEecc
Confidence            9999999999999999999999999999998754321    1123 4799999999999999999999999999999998


Q ss_pred             CC--cCCCC
Q 015490          374 DK--KKSGG  380 (406)
Q Consensus       374 ~~--~~~~~  380 (406)
                      ..  +.+..
T Consensus       649 ~~~d~~i~~  657 (764)
T KOG1063|consen  649 DLRDKYISR  657 (764)
T ss_pred             Cchhhhhhh
Confidence            88  55444

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.90  E-value=6e-22  Score=161.38  Aligned_cols=217  Identities=16%  Similarity=0.174  Sum_probs=169.1

Q ss_pred             EEecCCCCceEEEEcc-CCCeEEEEe-cCCeEEEEEecccccceeecceeccceeee----cccccCcEEEEEECC-CCC
Q 015490          108 ELRTDSDLPYRMAIHP-HGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLS----QLENVGQQLALTFDS-EGT  180 (406)
Q Consensus       108 ~~~~h~~~v~~~~~sp-~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~-~g~  180 (406)
                      ..+.|.+.|.++.+.+ .|+++++|+ |+.+.+|++...+..+..-+..  ..+++.    .-.|...|..+.|-| |..
T Consensus        38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~--k~~c~v~~~h~~~Hky~iss~~WyP~DtG  115 (397)
T KOG4283|consen   38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIA--KHKCIVAKQHENGHKYAISSAIWYPIDTG  115 (397)
T ss_pred             eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhcccee--heeeeccccCCccceeeeeeeEEeeecCc
Confidence            4457889999999987 467888887 9999999887665433332222  111211    112336788999988 667


Q ss_pred             EEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccC---CCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEE
Q 015490          181 IFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPD---GKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFAS  257 (406)
Q Consensus       181 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~---~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  257 (406)
                      .|.+++.|.+++|||.++.+....+. ..+.|++-+|||=   ..++|+|..+-.|++.|+.+|...+.+.+|.+ .|.+
T Consensus       116 mFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~-~vla  193 (397)
T KOG4283|consen  116 MFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD-GVLA  193 (397)
T ss_pred             eeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC-ceEE
Confidence            88899999999999999988776553 4557888889884   34788888999999999999999999998755 5779


Q ss_pred             EEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc-eEEEEe--------------eecCCCeEEEEEcCCCCEEEEEeCCC
Q 015490          258 CRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW-KRIRTK--------------QVVREPVSSFNVSADGKLLAVGTASG  322 (406)
Q Consensus       258 ~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~-~~~~~~--------------~~~~~~i~~~~~sp~~~~l~~~~~dg  322 (406)
                      +.|+|....     ++++++.||.|++||++.- .+...+              ..|.+.+..++|+.++.++++.+.|.
T Consensus       194 V~Wsp~~e~-----vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~  268 (397)
T KOG4283|consen  194 VEWSPSSEW-----VLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD  268 (397)
T ss_pred             EEeccCcee-----EEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCcc
Confidence            999999884     8899999999999999853 233333              23456789999999999999999999


Q ss_pred             cEEEEECCCce
Q 015490          323 DISIIDSSSLQ  333 (406)
Q Consensus       323 ~i~i~d~~~~~  333 (406)
                      .+++|+..+|+
T Consensus       269 r~r~wn~~~G~  279 (397)
T KOG4283|consen  269 RIRVWNMESGR  279 (397)
T ss_pred             ceEEeecccCc
Confidence            99999987654

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=4.7e-24  Score=192.74  Aligned_cols=207  Identities=19%  Similarity=0.266  Sum_probs=186.4

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeee
Q 015490          166 NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT  245 (406)
Q Consensus       166 ~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~  245 (406)
                      |...+.|+..-..++.+++|+.|..+-+|.+.....+..+.+|..+|.++.|+++..+|++|+.+|+|++||+..++.++
T Consensus        27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vr  106 (825)
T KOG0267|consen   27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVR  106 (825)
T ss_pred             hhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhh
Confidence            44667777776678899999999999999998877777889999999999999999999999999999999999999999


Q ss_pred             ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 015490          246 PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDIS  325 (406)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~  325 (406)
                      .+.++.. .+.++.|+|.+.+      .+.++.|..+.+||.+...+.+.+..|...+..+.|+|+|++++.|++|..++
T Consensus       107 tLtgh~~-~~~sv~f~P~~~~------~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvk  179 (825)
T KOG0267|consen  107 TLTGHLL-NITSVDFHPYGEF------FASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVK  179 (825)
T ss_pred             hhhcccc-CcceeeeccceEE------eccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceee
Confidence            8887655 4668999999873      48889999999999998889999999999999999999999999999999999


Q ss_pred             EEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCC
Q 015490          326 IIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGG  380 (406)
Q Consensus       326 i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~  380 (406)
                      |||+..++....+. .|.+.+..+.|+|..-++++||.|++|++||+++.+.+..
T Consensus       180 i~d~~agk~~~ef~-~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s  233 (825)
T KOG0267|consen  180 IWDLTAGKLSKEFK-SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISS  233 (825)
T ss_pred             eecccccccccccc-cccccccccccCchhhhhccCCCCceeeeeccceeEEeec
Confidence            99999999999996 8999999999999999999999999999999997665543

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.90  E-value=2e-20  Score=163.01  Aligned_cols=262  Identities=17%  Similarity=0.273  Sum_probs=189.2

Q ss_pred             cCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeec
Q 015490           85 IRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQ  163 (406)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  163 (406)
                      .+..+.++.|+.+.      .....+..++.|....|+|.+..+++.. .+.+..|.+..  +...++..+      +..
T Consensus       178 ~~h~lSVWdWqk~~------~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~--~~l~k~~~~------fek  243 (626)
T KOG2106|consen  178 NPHMLSVWDWQKKA------KLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRG--GSLVKRQGI------FEK  243 (626)
T ss_pred             Cccccchhhchhhh------ccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccC--CceEEEeec------ccc
Confidence            34445555555543      4445556678899999999888776654 66666665443  333222111      111


Q ss_pred             ccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCee
Q 015490          164 LENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAV  243 (406)
Q Consensus       164 ~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~  243 (406)
                       .....|.|++|.++|. +++|..+|.|.||+..+.+.......|.+.|.+++...+|. |++|+.|..|..||-. -+.
T Consensus       244 -~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~-y~k  319 (626)
T KOG2106|consen  244 -REKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDN-YRK  319 (626)
T ss_pred             -ccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEecccc-ccc
Confidence             1126799999999997 56999999999999988887777778888999999999997 5559999999999831 111


Q ss_pred             eeecc----------------------------------------cCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEE
Q 015490          244 ATPLA----------------------------------------KENDELFASCRFSPLNNEDYVLYIAAITDRGASIV  283 (406)
Q Consensus       244 ~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~  283 (406)
                      .+..+                                        ..+......++.+|+...      +++++.|+.++
T Consensus       320 ~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q------~~T~gqdk~v~  393 (626)
T KOG2106|consen  320 LRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQ------LLTCGQDKHVR  393 (626)
T ss_pred             cccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhh------eeeccCcceEE
Confidence            11100                                        012223445666666663      56678999999


Q ss_pred             EEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEEC
Q 015490          284 TWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASM  363 (406)
Q Consensus       284 ~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~  363 (406)
                      +|+  ..++..+.. -..+..|+.|+|.| .+|.|+..|...+.|.++...+..-.  .+.+++.+.|+|+|.+||.|+.
T Consensus       394 lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~--d~~~ls~v~ysp~G~~lAvgs~  467 (626)
T KOG2106|consen  394 LWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT--DNEQLSVVRYSPDGAFLAVGSH  467 (626)
T ss_pred             Ecc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe--cCCceEEEEEcCCCCEEEEecC
Confidence            999  334444433 34678999999999 99999999999999999865555443  3889999999999999999999


Q ss_pred             CCcEEEEEecCCc
Q 015490          364 DSSVRVTVIEDKK  376 (406)
Q Consensus       364 dg~i~iw~~~~~~  376 (406)
                      |+.|+||.+....
T Consensus       468 d~~iyiy~Vs~~g  480 (626)
T KOG2106|consen  468 DNHIYIYRVSANG  480 (626)
T ss_pred             CCeEEEEEECCCC
Confidence            9999999997654

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.3e-20  Score=169.51  Aligned_cols=246  Identities=17%  Similarity=0.198  Sum_probs=192.3

Q ss_pred             eEEecC-CCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEe
Q 015490          107 AELRTD-SDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAG  185 (406)
Q Consensus       107 ~~~~~h-~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  185 (406)
                      ..+.++ ...|.+++|++.++++-++.++.+.-|+  ..+.+....++.           ..+.|.+++.+|.+..++.|
T Consensus        62 ~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwD--l~~lk~~~~~d~-----------~gg~IWsiai~p~~~~l~Ig  128 (691)
T KOG2048|consen   62 PVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWD--LHTLKQKYNIDS-----------NGGAIWSIAINPENTILAIG  128 (691)
T ss_pred             EEEecCCCCceeeEEEccCCeEEeecCCceEEEEe--cccCceeEEecC-----------CCcceeEEEeCCccceEEee
Confidence            344444 5789999999766655555577666554  443333322211           34789999999999999999


Q ss_pred             eCCCeEEEEeCCCcceEee--eeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeec-------ccCCcceEE
Q 015490          186 SENGNLRVFKWPSLEIILN--ESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPL-------AKENDELFA  256 (406)
Q Consensus       186 ~~dg~i~vwd~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-------~~~~~~~~~  256 (406)
                      +.||.+..++...++....  +....+.|.+++|+|++..|+.|+.||.|++||..++...+..       .......+.
T Consensus       129 cddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVW  208 (691)
T KOG2048|consen  129 CDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVW  208 (691)
T ss_pred             cCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEE
Confidence            9999888888877765443  3334468999999999999999999999999999998877622       122345678


Q ss_pred             EEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceE--
Q 015490          257 SCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQV--  334 (406)
Q Consensus       257 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~--  334 (406)
                      ++.|..++.       +++++..|.|.+||...+..+..+..|...|.+++..+++.++++++.|+.|.-|...+...  
T Consensus       209 Sv~~Lrd~t-------I~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~w  281 (691)
T KOG2048|consen  209 SVLFLRDST-------IASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEW  281 (691)
T ss_pred             EEEEeecCc-------EEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccce
Confidence            888887764       68889999999999999999999999999999999999999999999999999998876643  


Q ss_pred             -EEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490          335 -RTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIED  374 (406)
Q Consensus       335 -~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~  374 (406)
                       .......|...|.+++..++  .+++|+.|.++.+-..+.
T Consensus       282 v~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~  320 (691)
T KOG2048|consen  282 VINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE  320 (691)
T ss_pred             eeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence             22222478889999999877  899999999988877655

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.90  E-value=1e-21  Score=165.03  Aligned_cols=258  Identities=16%  Similarity=0.190  Sum_probs=181.5

Q ss_pred             eEEecCCCCceEEEEccCCCeEEEEe---cCCeEEEEEecccc--cceeecceeccceeeeccccc-CcEEEEEECCCC-
Q 015490          107 AELRTDSDLPYRMAIHPHGDGIICAL---QNSCRLFEWDEVEN--TEIRRLGVKISEKVLSQLENV-GQQLALTFDSEG-  179 (406)
Q Consensus       107 ~~~~~h~~~v~~~~~sp~~~~l~~~~---~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g-  179 (406)
                      ...-.|.+.+..+.-++-++-.++++   .|.++||++...-.  ............+++.++.++ ..=..++|||-. 
T Consensus       145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~  224 (440)
T KOG0302|consen  145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT  224 (440)
T ss_pred             ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc
Confidence            34557888899999888876555554   56666665532210  000000000133445555555 667899999932 


Q ss_pred             CEEEEeeCCCeEEEEeCCCcceE---eeeeccCCceeEEEEccCC-CEEEEEeCCCCEEEEEcCCCeee-eecccCCcce
Q 015490          180 TIFAAGSENGNLRVFKWPSLEII---LNESEAHASVKDLSFSPDG-KFLVSLGNRGPGRVWDLASSAVA-TPLAKENDEL  254 (406)
Q Consensus       180 ~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~i~~~~~s~~~-~~l~s~s~d~~i~iwd~~~~~~~-~~~~~~~~~~  254 (406)
                      ..|++|.--+.|++|...++.-.   ..+.+|...|-+++|||.. ..|++||.||+|+|||++.+... ..+...+...
T Consensus       225 g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sD  304 (440)
T KOG0302|consen  225 GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSD  304 (440)
T ss_pred             cccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCc
Confidence            34778877889999998877543   2456677899999999964 48999999999999999988322 2222345557


Q ss_pred             EEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC---ceEEEEeeecCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECC
Q 015490          255 FASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT---WKRIRTKQVVREPVSSFNVSAD-GKLLAVGTASGDISIIDSS  330 (406)
Q Consensus       255 ~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~---~~~~~~~~~~~~~i~~~~~sp~-~~~l~~~~~dg~i~i~d~~  330 (406)
                      |..+.|+....      ++++|+.+|++++||+++   ++++..++.|..+|+++.|+|. ...|++++.|.+|.+||+.
T Consensus       305 VNVISWnr~~~------lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  305 VNVISWNRREP------LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             eeeEEccCCcc------eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence            88999988765      578999999999999986   4578899999999999999994 5678888899999999985


Q ss_pred             CceE----------------EEEeecccc--cceEEEEEcCC-CCeEEEEECCCcEEEEEe
Q 015490          331 SLQV----------------RTAVKKAHL--GIVTALAFSYD-SRALVSASMDSSVRVTVI  372 (406)
Q Consensus       331 ~~~~----------------~~~~~~~~~--~~v~~~~~sp~-~~~l~s~s~dg~i~iw~~  372 (406)
                      ...-                ...+ ..|.  ..+..+.|+++ ..+|++.+.|| +.||..
T Consensus       379 vE~D~ee~~~~a~~~L~dlPpQLL-FVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfkt  437 (440)
T KOG0302|consen  379 VEADEEEIDQEAAEGLQDLPPQLL-FVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFKT  437 (440)
T ss_pred             ccCChhhhccccccchhcCCceeE-EEecchhHhhhheeccCCCCeEEEecccc-eeEEEe
Confidence            3110                1111 1353  35788999986 35778888888 666653

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.90  E-value=7.9e-22  Score=177.75  Aligned_cols=242  Identities=17%  Similarity=0.219  Sum_probs=195.4

Q ss_pred             cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEE-EEECC-CC
Q 015490          104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLA-LTFDS-EG  179 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~-~~~s~-~g  179 (406)
                      +.-+.+.+|...|..+++.+.. .+++++ |+++++|.-....-..            ...+. +.+.+.+ +++-+ ++
T Consensus         5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~------------~~~~~~~~g~i~~~i~y~e~~~   71 (745)
T KOG0301|consen    5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLE------------THAFEGPKGFIANSICYAESDK   71 (745)
T ss_pred             eeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCccccc------------ceecccCcceeeccceeccccC
Confidence            4567889999999999987654 566666 8999997643221111            01122 3355555 67765 55


Q ss_pred             CEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEE
Q 015490          180 TIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCR  259 (406)
Q Consensus       180 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  259 (406)
                      -.+++|+.|.+|.+|...+..+...+.+|...|.+++...++. +++||.|.++++|...  ++...+.+ |...|.++.
T Consensus        72 ~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~g-H~asVWAv~  147 (745)
T KOG0301|consen   72 GRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQG-HTASVWAVA  147 (745)
T ss_pred             cceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch--hhhcccCC-cchheeeee
Confidence            5699999999999999999999999999999999999888887 9999999999999864  44455655 455688999


Q ss_pred             EEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEee
Q 015490          260 FSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVK  339 (406)
Q Consensus       260 ~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  339 (406)
                      .-|.+.       ..+++.|..|++|.-  ++.++++.+|...|+.+++-+++. +++++.||.|++|++ +++.+..+.
T Consensus       148 ~l~e~~-------~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~  216 (745)
T KOG0301|consen  148 SLPENT-------YVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMH  216 (745)
T ss_pred             ecCCCc-------EEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeee
Confidence            989885       367788999999987  578899999999999999998764 668889999999999 678888875


Q ss_pred             cccccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490          340 KAHLGIVTALAFSYDSRALVSASMDSSVRVTVIED  374 (406)
Q Consensus       340 ~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~  374 (406)
                       +|...|.++....++..+++++.|++++||+...
T Consensus       217 -ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e  250 (745)
T KOG0301|consen  217 -GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDE  250 (745)
T ss_pred             -ccceEEEEEEecCCCCeEEEecCCceEEEeecCc
Confidence             8999999999888888999999999999999873

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=9e-21  Score=170.61  Aligned_cols=248  Identities=13%  Similarity=0.130  Sum_probs=199.2

Q ss_pred             ecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCC
Q 015490          110 RTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSEN  188 (406)
Q Consensus       110 ~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  188 (406)
                      .--...|.+|+|+.+.+.||++- ++.+.||+....-.           .+..-.......|.+++|++.+ .|++.+.+
T Consensus        22 d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~-----------~~~vi~g~~drsIE~L~W~e~~-RLFS~g~s   89 (691)
T KOG2048|consen   22 DYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWF-----------LEPVIHGPEDRSIESLAWAEGG-RLFSSGLS   89 (691)
T ss_pred             eeeccceEEEEEeccCCceeeeccCCcEEEEccCCCce-----------eeEEEecCCCCceeeEEEccCC-eEEeecCC
Confidence            33467899999999999999886 99999998765211           1111111233679999999555 56677889


Q ss_pred             CeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeeccc-CCcceEEEEEEEcCCCCc
Q 015490          189 GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAK-ENDELFASCRFSPLNNED  267 (406)
Q Consensus       189 g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  267 (406)
                      |.|.-||+.+++....+....+.|++++.+|.+..++.+++||.+..++...++....... .....+-++.|+|++.+ 
T Consensus        90 g~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~-  168 (691)
T KOG2048|consen   90 GSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTK-  168 (691)
T ss_pred             ceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccE-
Confidence            9999999999999988888778999999999999999999999888888877766553332 33467889999999975 


Q ss_pred             eEEEEEEEcCCCcEEEEEeCCCceEEEEeee--------cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEee
Q 015490          268 YVLYIAAITDRGASIVTWNTTTWKRIRTKQV--------VREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVK  339 (406)
Q Consensus       268 ~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~--------~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  339 (406)
                           ++.|+.||.|++||..++..+.....        ...-|+++.|-.++ .|++|...|+|.+||...+..+..+.
T Consensus       169 -----i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~  242 (691)
T KOG2048|consen  169 -----IAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHS  242 (691)
T ss_pred             -----EEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhh
Confidence                 67889999999999998877662221        12246677776554 78999999999999999999999886


Q ss_pred             cccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490          340 KAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       340 ~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                       .|...|.+++..+++.++++++.|+.|.-+...+++.
T Consensus       243 -~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~  279 (691)
T KOG2048|consen  243 -CHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS  279 (691)
T ss_pred             -hhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence             8999999999999999999999999999999887755

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=3.3e-21  Score=158.51  Aligned_cols=198  Identities=16%  Similarity=0.223  Sum_probs=167.3

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCC--EEEEEeCCCCEEEEEcCCCee
Q 015490          166 NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGK--FLVSLGNRGPGRVWDLASSAV  243 (406)
Q Consensus       166 ~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~s~s~d~~i~iwd~~~~~~  243 (406)
                      |.+.+++++.  ++.++|+|+.|.+|+|||+++......+..|.+.|+++.|.+.-.  .|++|+.||.|.+|+...-..
T Consensus        42 H~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~  119 (362)
T KOG0294|consen   42 HAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWEL  119 (362)
T ss_pred             cccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEE
Confidence            4488999998  578999999999999999999999999999999999999998765  899999999999999999999


Q ss_pred             eeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCc
Q 015490          244 ATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGD  323 (406)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~  323 (406)
                      +..+..|... |+.++.+|.++      ++.+.+.|+.+++||+-+++.-..+.... ..+.+.|+|.|.+++.+..+ .
T Consensus       120 ~~slK~H~~~-Vt~lsiHPS~K------LALsVg~D~~lr~WNLV~Gr~a~v~~L~~-~at~v~w~~~Gd~F~v~~~~-~  190 (362)
T KOG0294|consen  120 LKSLKAHKGQ-VTDLSIHPSGK------LALSVGGDQVLRTWNLVRGRVAFVLNLKN-KATLVSWSPQGDHFVVSGRN-K  190 (362)
T ss_pred             eeeecccccc-cceeEecCCCc------eEEEEcCCceeeeehhhcCccceeeccCC-cceeeEEcCCCCEEEEEecc-E
Confidence            9999887665 99999999998      45666789999999999988766665543 34569999999999888765 4


Q ss_pred             EEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490          324 ISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       324 i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      |-+|.+.+......+.  ....+.++.|. ++..|++|+.|+.|++||.++...
T Consensus       191 i~i~q~d~A~v~~~i~--~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~  241 (362)
T KOG0294|consen  191 IDIYQLDNASVFREIE--NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTP  241 (362)
T ss_pred             EEEEecccHhHhhhhh--ccccceeeeec-CCceEEEecCCceEEEeccCCCcc
Confidence            9999998877766664  33456677776 467899999999999999987544

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.89  E-value=7.3e-22  Score=169.87  Aligned_cols=263  Identities=14%  Similarity=0.135  Sum_probs=195.8

Q ss_pred             cceeEEecCCCCceEEEEccCCC-eEEEEe--cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCC-
Q 015490          104 QPVAELRTDSDLPYRMAIHPHGD-GIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEG-  179 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~~~-~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-  179 (406)
                      ......+-+.+.|++++|+|... .+++++  .|.+-+|+++.+...         .........|..+|.++.|+|.. 
T Consensus       177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d---------~d~v~~f~~hs~~Vs~l~F~P~n~  247 (498)
T KOG4328|consen  177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD---------KDGVYLFTPHSGPVSGLKFSPANT  247 (498)
T ss_pred             eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCc---------cCceEEeccCCccccceEecCCCh
Confidence            34556777899999999999876 555555  666777776522111         12222333456889999999954 


Q ss_pred             CEEEEeeCCCeEEEEeCCCcceEeeeec--cCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEE
Q 015490          180 TIFAAGSENGNLRVFKWPSLEIILNESE--AHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFAS  257 (406)
Q Consensus       180 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  257 (406)
                      ..+++.+.||+|++-|++++..-..+..  ....+.++.|+.+...++.+..=|.+.+||.+++........-+...|..
T Consensus       248 s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~s  327 (498)
T KOG4328|consen  248 SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITS  327 (498)
T ss_pred             hheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccce
Confidence            7888999999999999987654332322  33477889999988888888888899999999877643333334447999


Q ss_pred             EEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceE----EEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC----
Q 015490          258 CRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKR----IRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDS----  329 (406)
Q Consensus       258 ~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~----~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~----  329 (406)
                      ++++|...+     ++++++.|+++++||++....    ......|...|.+..|||.+..|++.+.|..|+|||.    
T Consensus       328 v~~NP~~p~-----~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~s  402 (498)
T KOG4328|consen  328 VALNPVCPW-----FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCIS  402 (498)
T ss_pred             eecCCCCch-----heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeeccccc
Confidence            999999986     778889999999999986432    2334467889999999998888999999999999998    


Q ss_pred             CCceEEEEeeccc--ccc--eEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCC
Q 015490          330 SSLQVRTAVKKAH--LGI--VTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGG  380 (406)
Q Consensus       330 ~~~~~~~~~~~~~--~~~--v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~  380 (406)
                      ....+...+...+  ..+  .....|.|+..++++|-.-..|-|+|-..++.+.+
T Consensus       403 a~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~e  457 (498)
T KOG4328|consen  403 AKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCE  457 (498)
T ss_pred             ccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeee
Confidence            3445555554211  122  34678999999999999999999999888875544

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.1e-21  Score=161.19  Aligned_cols=199  Identities=17%  Similarity=0.296  Sum_probs=157.9

Q ss_pred             EEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeeccc
Q 015490          170 QLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAK  249 (406)
Q Consensus       170 v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  249 (406)
                      ..|+.|++.|.+||+|+.||.|.|||+.+......+..|..+|++++||+||+.|+++|.|..|.+||+..|.+++.+..
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf  105 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF  105 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence            78999999999999999999999999999988777888888999999999999999999999999999999999888864


Q ss_pred             CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeec--CCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 015490          250 ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVV--REPVSSFNVSADGKLLAVGTASGDISII  327 (406)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~i~~~~~sp~~~~l~~~~~dg~i~i~  327 (406)
                        ..++..+.|+|...+   .+++..-.....+..++-...+.+..-...  .....+..|++.|++|++|...|.+.++
T Consensus       106 --~spv~~~q~hp~k~n---~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~  180 (405)
T KOG1273|consen  106 --DSPVWGAQWHPRKRN---KCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVY  180 (405)
T ss_pred             --cCccceeeeccccCC---eEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEE
Confidence              457889999998876   222222233333333332221111111100  1122334688999999999999999999


Q ss_pred             ECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490          328 DSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       328 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~  373 (406)
                      |..+.+++..+.......|.++.++..|++|+.-+.|..||.|+++
T Consensus       181 ~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  181 DAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS  226 (405)
T ss_pred             ecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence            9999999888863334789999999999999999999999999987

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.89  E-value=3.2e-21  Score=172.35  Aligned_cols=255  Identities=15%  Similarity=0.135  Sum_probs=176.8

Q ss_pred             cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCC-CE
Q 015490          104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEG-TI  181 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~  181 (406)
                      +.+.....|.+.|..+.|.|....|++++ |.++++|++........           -..+.|.+.|.+++|.|+. ..
T Consensus        91 ~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~-----------~~~~GH~~SvkS~cf~~~n~~v  159 (720)
T KOG0321|consen   91 RQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGG-----------RLNLGHTGSVKSECFMPTNPAV  159 (720)
T ss_pred             hhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecc-----------eeecccccccchhhhccCCCcc
Confidence            34566778999999999999545555553 88888877664321111           0235577899999999955 78


Q ss_pred             EEEeeCCCeEEEEeCCCcc---------------------------eEeeeeccCCceeE---EEEccCCCEEEEEeC-C
Q 015490          182 FAAGSENGNLRVFKWPSLE---------------------------IILNESEAHASVKD---LSFSPDGKFLVSLGN-R  230 (406)
Q Consensus       182 l~~~~~dg~i~vwd~~~~~---------------------------~~~~~~~~~~~i~~---~~~s~~~~~l~s~s~-d  230 (406)
                      |++|+.||.|.|||++-..                           .+.....+...|.+   +.+..|...||+++. |
T Consensus       160 F~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D  239 (720)
T KOG0321|consen  160 FCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAAD  239 (720)
T ss_pred             eeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCC
Confidence            9999999999999984211                           00111122234555   556678889999987 9


Q ss_pred             CCEEEEEcCCCeeeeecc--------cCC--cceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCce--EEEEeee
Q 015490          231 GPGRVWDLASSAVATPLA--------KEN--DELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK--RIRTKQV  298 (406)
Q Consensus       231 ~~i~iwd~~~~~~~~~~~--------~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~--~~~~~~~  298 (406)
                      +.|+|||++.........        .+.  ...+.++.....|.+     +++++. |+.|++|++.+..  ++..+.+
T Consensus       240 ~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~-----L~AsCt-D~sIy~ynm~s~s~sP~~~~sg  313 (720)
T KOG0321|consen  240 STIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTY-----LFASCT-DNSIYFYNMRSLSISPVAEFSG  313 (720)
T ss_pred             cceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCe-----EEEEec-CCcEEEEeccccCcCchhhccC
Confidence            999999998765433221        111  223455666666664     445544 9999999998643  2333333


Q ss_pred             cCC--CeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCC-CeEEEEECCCcEEEEEecCC
Q 015490          299 VRE--PVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDS-RALVSASMDSSVRVTVIEDK  375 (406)
Q Consensus       299 ~~~--~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~s~dg~i~iw~~~~~  375 (406)
                      +..  .-..-..+||+.++++|+.|...++|.+.+.+....+..+|...|++++|.|.. .-+++++.|.+++||++.++
T Consensus       314 ~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  314 KLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             cccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            211  112234689999999999999999999998776655556999999999998842 34778899999999999654

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=1.2e-19  Score=161.75  Aligned_cols=236  Identities=19%  Similarity=0.201  Sum_probs=164.7

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeeccccc
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV  167 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (406)
                      .+..|+.....    ....+..+.. +..++|+|+++.+++++  ++.+.+  |+..+...            +..+...
T Consensus        54 ~v~~~d~~~~~----~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~--~d~~~~~~------------~~~~~~~  114 (300)
T TIGR03866        54 TIQVIDLATGE----VIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTV--IDIETRKV------------LAEIPVG  114 (300)
T ss_pred             eEEEEECCCCc----EEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEE--EECCCCeE------------EeEeeCC
Confidence            35556655422    3334444433 57889999999887664  455555  45443222            2222333


Q ss_pred             CcEEEEEECCCCCEEEEeeCCC-eEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEe-CCCCEEEEEcCCCeeee
Q 015490          168 GQQLALTFDSEGTIFAAGSENG-NLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLG-NRGPGRVWDLASSAVAT  245 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s-~d~~i~iwd~~~~~~~~  245 (406)
                      ..+.+++|+|+|+++++++.++ .+.+||.++++....... ...+.+++|+|++++|++++ .++.|++||+++++...
T Consensus       115 ~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~  193 (300)
T TIGR03866       115 VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIK  193 (300)
T ss_pred             CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeee
Confidence            4467899999999999888765 577889988776654432 23457899999999886554 68999999999988766


Q ss_pred             ecccCC------cceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEe
Q 015490          246 PLAKEN------DELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGT  319 (406)
Q Consensus       246 ~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~  319 (406)
                      .+....      ......++|+|+++.     +.+....++.+.+||.++++....+. +...+.+++|+|+|++|+++.
T Consensus       194 ~~~~~~~~~~~~~~~~~~i~~s~dg~~-----~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~  267 (300)
T TIGR03866       194 KITFEIPGVHPEAVQPVGIKLTKDGKT-----AFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTN  267 (300)
T ss_pred             eeeecccccccccCCccceEECCCCCE-----EEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEc
Confidence            553211      112346889999984     23333456789999999888776554 345688999999999998864


Q ss_pred             -CCCcEEEEECCCceEEEEeecccccceEEEEEcC
Q 015490          320 -ASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSY  353 (406)
Q Consensus       320 -~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp  353 (406)
                       .++.|.+||+.+++.+..+.  .....+.++++|
T Consensus       268 ~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~  300 (300)
T TIGR03866       268 GVSNDVSVIDVAALKVIKSIK--VGRLPWGVVVRP  300 (300)
T ss_pred             CCCCeEEEEECCCCcEEEEEE--cccccceeEeCC
Confidence             58999999999999999886  345568888875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.89  E-value=1.7e-21  Score=163.74  Aligned_cols=205  Identities=18%  Similarity=0.246  Sum_probs=163.3

Q ss_pred             cccccCcEEEEEECCCC--CEEEEeeCCCeEEEEeCCC----------------cceEeeeeccCCceeEEEEccCC-CE
Q 015490          163 QLENVGQQLALTFDSEG--TIFAAGSENGNLRVFKWPS----------------LEIILNESEAHASVKDLSFSPDG-KF  223 (406)
Q Consensus       163 ~~~~~~~v~~~~~s~~g--~~l~~~~~dg~i~vwd~~~----------------~~~~~~~~~~~~~i~~~~~s~~~-~~  223 (406)
                      ...+.+.++.+.-++-+  .+.++=+..|.|+||++..                .+.+.++.+|...=+.++|||-. ..
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~  226 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR  226 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence            34456677777776654  5666668899999999832                23556677777777899999932 24


Q ss_pred             EEEEeCCCCEEEEEcCCCeeee---ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc---eEEEEee
Q 015490          224 LVSLGNRGPGRVWDLASSAVAT---PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW---KRIRTKQ  297 (406)
Q Consensus       224 l~s~s~d~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~---~~~~~~~  297 (406)
                      |++|..-+.|++|...++.-..   .+.. |...|..++|+|....     ++++++-|+.|++||++.+   .++.+ +
T Consensus       227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~g-H~~SVEDLqWSptE~~-----vfaScS~DgsIrIWDiRs~~~~~~~~~-k  299 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTG-HTKSVEDLQWSPTEDG-----VFASCSCDGSIRIWDIRSGPKKAAVST-K  299 (440)
T ss_pred             cccCccccceEeeeeccCceeecCccccc-cccchhhhccCCccCc-----eEEeeecCceEEEEEecCCCccceeEe-e
Confidence            7888888899999998865432   3344 5667889999999987     7788899999999999987   33433 7


Q ss_pred             ecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---ceEEEEeecccccceEEEEEcCC-CCeEEEEECCCcEEEEEec
Q 015490          298 VVREPVSSFNVSADGKLLAVGTASGDISIIDSSS---LQVRTAVKKAHLGIVTALAFSYD-SRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       298 ~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~v~~~~~sp~-~~~l~s~s~dg~i~iw~~~  373 (406)
                      .|.+.|..++|+.+..+||+|+.||+++|||+++   ++++..++ .|..+|+++.|+|. ...|++++.|.+|.+||+.
T Consensus       300 Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk-~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  300 AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFK-YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             ccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEE-eccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence            7889999999999888999999999999999985   56778886 79999999999995 5678888999999999996


Q ss_pred             CC
Q 015490          374 DK  375 (406)
Q Consensus       374 ~~  375 (406)
                      -.
T Consensus       379 vE  380 (440)
T KOG0302|consen  379 VE  380 (440)
T ss_pred             cc
Confidence            43

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=5.8e-21  Score=157.05  Aligned_cols=240  Identities=12%  Similarity=0.131  Sum_probs=183.0

Q ss_pred             ceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCCEEEEeeCCCeEEE
Q 015490          116 PYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIFAAGSENGNLRV  193 (406)
Q Consensus       116 v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~dg~i~v  193 (406)
                      ..|+.|++-|.+|++|+ +|.+.||+++...              ..+.+..| .+|.+++||+||+.|++++.|..|.+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~--------------iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~l   91 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR--------------IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKL   91 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccc--------------hhhhhhccccceeEEEecCCCCEeeeecCCceeEE
Confidence            78999999999999998 9999998887532              23334444 88999999999999999999999999


Q ss_pred             EeCCCcceEeeeeccCCce-----------------------------------------------eEEEEccCCCEEEE
Q 015490          194 FKWPSLEIILNESEAHASV-----------------------------------------------KDLSFSPDGKFLVS  226 (406)
Q Consensus       194 wd~~~~~~~~~~~~~~~~i-----------------------------------------------~~~~~s~~~~~l~s  226 (406)
                      ||+..|.++..+.- .++|                                               .+..|.+.|+++++
T Consensus        92 wDl~~gs~l~rirf-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIit  170 (405)
T KOG1273|consen   92 WDLLKGSPLKRIRF-DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIIT  170 (405)
T ss_pred             EeccCCCceeEEEc-cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEE
Confidence            99987765433211 0011                                               12235566889999


Q ss_pred             EeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEE---------EEee
Q 015490          227 LGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRI---------RTKQ  297 (406)
Q Consensus       227 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~---------~~~~  297 (406)
                      |...|.+.++|..+.+++..++......+..+.++..++.      ++....|+.|+.|+++.-...         ..++
T Consensus       171 GtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~------liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~q  244 (405)
T KOG1273|consen  171 GTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRF------LIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQ  244 (405)
T ss_pred             ecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcE------EEEecCCceEEEEehhhhcccCccCCcChhHHHH
Confidence            9999999999999999988777655566888999999983      455577999999998631110         0110


Q ss_pred             --ecCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCceEEEEeecccc-cceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490          298 --VVREPVSSFNVSADGKLLAVGTA-SGDISIIDSSSLQVRTAVKKAHL-GIVTALAFSYDSRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       298 --~~~~~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~  373 (406)
                        ..+..-.+++||.+|.|++.++. -..++||....|..++.+. |.. .....+.|+|-...+++. ..|.|+||...
T Consensus       245 DvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILh-G~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~  322 (405)
T KOG1273|consen  245 DVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILH-GTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV  322 (405)
T ss_pred             HHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeec-CCchhheeecccccceeeeeec-cCCceEEEEee
Confidence              01234568999999999988875 4679999999999999986 555 557789999988888877 67899999987


Q ss_pred             CCcCC
Q 015490          374 DKKKS  378 (406)
Q Consensus       374 ~~~~~  378 (406)
                      ..+..
T Consensus       323 ~~enw  327 (405)
T KOG1273|consen  323 QVENW  327 (405)
T ss_pred             cccch
Confidence            76653

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=4e-22  Score=158.26  Aligned_cols=203  Identities=15%  Similarity=0.183  Sum_probs=164.8

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc---eEeeeeccCCceeEEEEcc--CCCEEEEEeCCCCEEEEEcCC
Q 015490          166 NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLE---IILNESEAHASVKDLSFSP--DGKFLVSLGNRGPGRVWDLAS  240 (406)
Q Consensus       166 ~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~i~~~~~s~--~~~~l~s~s~d~~i~iwd~~~  240 (406)
                      |.+.|..+...--|+.||+++.|++|+|+.+++..   .+..+.+|.++|..++|..  .|.+|++++.||.|.||.-.+
T Consensus        10 H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~   89 (299)
T KOG1332|consen   10 HEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEEN   89 (299)
T ss_pred             hhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCC
Confidence            44667777777789999999999999999997543   5677889999999999965  799999999999999999988


Q ss_pred             Ceeeeecc-cCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc---eEEEEeeecCCCeEEEEEcCC---C-
Q 015490          241 SAVATPLA-KENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW---KRIRTKQVVREPVSSFNVSAD---G-  312 (406)
Q Consensus       241 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~i~~~~~sp~---~-  312 (406)
                      ++-.+... ..+...+++++|.|.+-.    ++++.++.||.|.+.+.+..   ...+....|.-.+++++|.|-   | 
T Consensus        90 g~w~k~~e~~~h~~SVNsV~wapheyg----l~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~  165 (299)
T KOG1332|consen   90 GRWTKAYEHAAHSASVNSVAWAPHEYG----LLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS  165 (299)
T ss_pred             Cchhhhhhhhhhcccceeecccccccc----eEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence            85433222 235567899999998865    56677788999999887653   233445678888999999995   4 


Q ss_pred             ----------CEEEEEeCCCcEEEEECCCce--EEEEeecccccceEEEEEcCCC----CeEEEEECCCcEEEEEec
Q 015490          313 ----------KLLAVGTASGDISIIDSSSLQ--VRTAVKKAHLGIVTALAFSYDS----RALVSASMDSSVRVTVIE  373 (406)
Q Consensus       313 ----------~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~sp~~----~~l~s~s~dg~i~iw~~~  373 (406)
                                +.|++|+.|..|+||+..+++  ...++ .+|.+.|+.++|.|.-    .+|+++|.||+|.||..+
T Consensus       166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l-~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~  241 (299)
T KOG1332|consen  166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTL-EGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD  241 (299)
T ss_pred             ccccCcccccceeeccCCccceeeeecCCcchhhhhhh-hhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence                      569999999999999988753  33445 4899999999999963    579999999999999887

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.88  E-value=3.3e-20  Score=159.80  Aligned_cols=266  Identities=15%  Similarity=0.168  Sum_probs=189.4

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCC-eEEE-EecCCeEEEEEecccccceeecceeccceeeeccccc
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGD-GIIC-ALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV  167 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (406)
                      .+..|+...+.-....+..+..|..+|.+|.|+|... .+++ +.||++++-+++....+++...           -...
T Consensus       211 ~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~-----------~~d~  279 (498)
T KOG4328|consen  211 QVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSL-----------DTDN  279 (498)
T ss_pred             cEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhc-----------Cccc
Confidence            4555555433333456778899999999999999764 3444 4499999988775533322221           1123


Q ss_pred             CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcce-EeeeeccCCceeEEEEccCCC-EEEEEeCCCCEEEEEcCCCeeee
Q 015490          168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEI-ILNESEAHASVKDLSFSPDGK-FLVSLGNRGPGRVWDLASSAVAT  245 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~iwd~~~~~~~~  245 (406)
                      ..+..+.|+.+...++.+..=|...+||.+++.. ...+.-|...|.+++++|-.. +|++++.|++++|||++......
T Consensus       280 ~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~  359 (498)
T KOG4328|consen  280 IWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKA  359 (498)
T ss_pred             eeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCC
Confidence            4567788988887788887778999999988765 555566777999999999654 78999999999999998754333


Q ss_pred             e---cccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC----CceEEEEeeecC------CCeEEEEEcCCC
Q 015490          246 P---LAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT----TWKRIRTKQVVR------EPVSSFNVSADG  312 (406)
Q Consensus       246 ~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~----~~~~~~~~~~~~------~~i~~~~~sp~~  312 (406)
                      .   ....|...|.+..|+|.+..      +++.+.|..|++||..    ...+..++. |.      -......|.|+.
T Consensus       360 sp~lst~~HrrsV~sAyFSPs~gt------l~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~  432 (498)
T KOG4328|consen  360 SPFLSTLPHRRSVNSAYFSPSGGT------LLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDY  432 (498)
T ss_pred             CcceecccccceeeeeEEcCCCCc------eEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCc
Confidence            2   22346677999999999985      4566789999999984    223333332 21      123457899999


Q ss_pred             CEEEEEeCCCcEEEEECCCceEEEEeecccccceE-EEEEcCCCCeEEEEE-CCCcEEEEEec
Q 015490          313 KLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVT-ALAFSYDSRALVSAS-MDSSVRVTVIE  373 (406)
Q Consensus       313 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~s~s-~dg~i~iw~~~  373 (406)
                      .++++|..-..|-|+|-..++.+..+.......|. -..|+|-+..+++|+ ..|.|+||--+
T Consensus       433 ~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  433 NLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             cEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence            99999999889999999988888876422333444 347999877555554 56788888644

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=2.4e-22  Score=190.77  Aligned_cols=253  Identities=19%  Similarity=0.225  Sum_probs=193.1

Q ss_pred             eEEEEccCCC-eEEEEe-----------cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCE---
Q 015490          117 YRMAIHPHGD-GIICAL-----------QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTI---  181 (406)
Q Consensus       117 ~~~~~sp~~~-~l~~~~-----------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~---  181 (406)
                      -.++|+|++. ++++|.           +.++.||.++..+...        ..+....+......+.++|.+.|..   
T Consensus        10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~--------dlk~~~s~~s~~rF~kL~W~~~g~~~~G   81 (1049)
T KOG0307|consen   10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESS--------DLKPVGSLQSSNRFNKLAWGSYGSHSHG   81 (1049)
T ss_pred             ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccc--------cccccccccccccceeeeecccCCCccc
Confidence            3568888886 444331           3455666666543321        1133444555677889999987754   


Q ss_pred             -EEEeeCCCeEEEEeCCCc------ceEeeeeccCCceeEEEEccCCC-EEEEEeCCCCEEEEEcCCCeeeeeccc-CCc
Q 015490          182 -FAAGSENGNLRVFKWPSL------EIILNESEAHASVKDLSFSPDGK-FLVSLGNRGPGRVWDLASSAVATPLAK-END  252 (406)
Q Consensus       182 -l~~~~~dg~i~vwd~~~~------~~~~~~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~-~~~  252 (406)
                       ||.|.+||.|.+||...-      ..+.....|++.|..+.|++... .||+|+.||.|.|||+...+....... ...
T Consensus        82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~  161 (1049)
T KOG0307|consen   82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPP  161 (1049)
T ss_pred             eeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCc
Confidence             899999999999997542      23455677888999999999765 999999999999999987655544422 234


Q ss_pred             ceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC--CCeEEEEEcCCC-CEEEEEeCCC---cEEE
Q 015490          253 ELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR--EPVSSFNVSADG-KLLAVGTASG---DISI  326 (406)
Q Consensus       253 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~i~~~~~sp~~-~~l~~~~~dg---~i~i  326 (406)
                      ..|.+++|+..-.+     ++++++.++.+.+||++..+++..+..+.  ..+..+.|+|++ ..|++++.|.   .|.+
T Consensus       162 ~eI~~lsWNrkvqh-----ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pviql  236 (1049)
T KOG0307|consen  162 SEIKCLSWNRKVSH-----ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQL  236 (1049)
T ss_pred             ccceEeccchhhhH-----HhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEe
Confidence            56889999998887     78899999999999999988877776654  347899999976 3566666543   5999


Q ss_pred             EECCCce-EEEEeecccccceEEEEEcCCC-CeEEEEECCCcEEEEEecCCcCCCCchH
Q 015490          327 IDSSSLQ-VRTAVKKAHLGIVTALAFSYDS-RALVSASMDSSVRVTVIEDKKKSGGLNL  383 (406)
Q Consensus       327 ~d~~~~~-~~~~~~~~~~~~v~~~~~sp~~-~~l~s~s~dg~i~iw~~~~~~~~~~~~~  383 (406)
                      ||++.-. +++.+ .+|...|.++.|++.+ ++|+|++.|++|.+|+.++++.+++++.
T Consensus       237 WDlR~assP~k~~-~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~  294 (1049)
T KOG0307|consen  237 WDLRFASSPLKIL-EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA  294 (1049)
T ss_pred             ecccccCCchhhh-cccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC
Confidence            9998644 45555 5899999999999966 8899999999999999999999999886

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.87  E-value=6.9e-21  Score=157.46  Aligned_cols=261  Identities=15%  Similarity=0.136  Sum_probs=176.7

Q ss_pred             cEEEEEEecCCCCccccceeEE--ecCCCCceEEEEccC----CCeEEEEe-cCCeEEEEEecccccceeecceecccee
Q 015490           88 AVLLSHFDFASNSLSDQPVAEL--RTDSDLPYRMAIHPH----GDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKV  160 (406)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~sp~----~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~  160 (406)
                      .+.++.+..+...   ..++.+  ..|++.-+.++|+-+    ..++++++ -|.++|  ++...            .+.
T Consensus        65 rvtiy~c~~d~~i---r~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrV--id~~~------------~~~  127 (385)
T KOG1034|consen   65 RVTIYECPGDGGI---RLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRV--IDVVS------------GQC  127 (385)
T ss_pred             EEEEEEECCccce---eeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEE--Eecch------------hhh
Confidence            5677777665521   122222  247778888888754    23566665 444444  55543            333


Q ss_pred             eeccccc-CcEEEEEECCCC-CEEEEeeCCCeEEEEeCCCcceEeee---eccCCceeEEEEccCCCEEEEEeCCCCEEE
Q 015490          161 LSQLENV-GQQLALTFDSEG-TIFAAGSENGNLRVFKWPSLEIILNE---SEAHASVKDLSFSPDGKFLVSLGNRGPGRV  235 (406)
Q Consensus       161 ~~~~~~~-~~v~~~~~s~~g-~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~i~~~~~s~~~~~l~s~s~d~~i~i  235 (406)
                      ...+.+| ..|+.+.+.|+. +++++++.|..|++|++++..++..+   .+|.+.|.++.|+++|.+|++++.|.++++
T Consensus       128 ~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~  207 (385)
T KOG1034|consen  128 SKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKL  207 (385)
T ss_pred             ccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEE
Confidence            3334444 789999999975 79999999999999999999998776   456679999999999999999999999999


Q ss_pred             EEcCCCeeeeeccc---------------------------CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC
Q 015490          236 WDLASSAVATPLAK---------------------------ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT  288 (406)
Q Consensus       236 wd~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~  288 (406)
                      |++...+....++.                           -|...|.|+.|--  .      ++.+-+-++.|..|...
T Consensus       208 W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d------~ilSkscenaI~~w~pg  279 (385)
T KOG1034|consen  208 WRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--D------FILSKSCENAIVCWKPG  279 (385)
T ss_pred             EecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh--h------heeecccCceEEEEecc
Confidence            99974322111110                           1122233333322  1      23455567799999872


Q ss_pred             -Cce-------------EEEEeeecCCCeEEE--EEcCCCCEEEEEeCCCcEEEEECCCceEEEE--ee-cccccceEEE
Q 015490          289 -TWK-------------RIRTKQVVREPVSSF--NVSADGKLLAVGTASGDISIIDSSSLQVRTA--VK-KAHLGIVTAL  349 (406)
Q Consensus       289 -~~~-------------~~~~~~~~~~~i~~~--~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~-~~~~~~v~~~  349 (406)
                       -.+             .+.++......|.-+  +|.|-++.||.|...|.|.+||++...+...  +. ......|+..
T Consensus       280 kl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~  359 (385)
T KOG1034|consen  280 KLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQT  359 (385)
T ss_pred             hhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeee
Confidence             111             123333334445444  5567789999999999999999998765322  11 1123568999


Q ss_pred             EEcCCCCeEEEEECCCcEEEEEec
Q 015490          350 AFSYDSRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       350 ~~sp~~~~l~s~s~dg~i~iw~~~  373 (406)
                      +|+.||..|+..+.|++|.-||.-
T Consensus       360 sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  360 SFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             eecccCcEEEEEeCCCcEEEEEee
Confidence            999999999999999999999864

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1.3e-20  Score=155.33  Aligned_cols=208  Identities=18%  Similarity=0.205  Sum_probs=151.6

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcce-----EeeeeccCCceeEEEEccCCCEEEEE-eCCCCEEEEEcC
Q 015490          166 NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEI-----ILNESEAHASVKDLSFSPDGKFLVSL-GNRGPGRVWDLA  239 (406)
Q Consensus       166 ~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~-----~~~~~~~~~~i~~~~~s~~~~~l~s~-s~d~~i~iwd~~  239 (406)
                      |.+.|++++|+.||++|++++.|++|++|+++....     ++... ..+..+.+.|.||.+-+++. -...++++|-+.
T Consensus        85 H~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~  163 (420)
T KOG2096|consen   85 HKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLV  163 (420)
T ss_pred             cCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEEEEEEee
Confidence            448899999999999999999999999999976432     11111 11245889999998865544 456689999774


Q ss_pred             CCe---eeee--------cccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEE
Q 015490          240 SSA---VATP--------LAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNV  308 (406)
Q Consensus       240 ~~~---~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~  308 (406)
                      ..+   ....        +...+...+..+-....+.      ++++++.|..|.+|+++ |+.+..+......-+..+.
T Consensus       164 K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k------~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav  236 (420)
T KOG2096|consen  164 KKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK------YIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV  236 (420)
T ss_pred             ecccCCCCcccccccccccchhcccceEEEeecCCce------EEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence            321   1111        1111222233333333333      45677889999999999 7888888777666788899


Q ss_pred             cCCCCEEEEEeCCCcEEEEECC---Cc-----eEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCC
Q 015490          309 SADGKLLAVGTASGDISIIDSS---SL-----QVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGG  380 (406)
Q Consensus       309 sp~~~~l~~~~~dg~i~i~d~~---~~-----~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~  380 (406)
                      ||+|+++++++-.-.|++|..-   .|     .....+. +|...|..++|+++.+.++|.|.||+++|||++-.-+.++
T Consensus       237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~Lk-GH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~q  315 (420)
T KOG2096|consen  237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLK-GHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQ  315 (420)
T ss_pred             CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheec-cchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCC
Confidence            9999999999998999999862   22     2345564 9999999999999999999999999999999975544444


Q ss_pred             ch
Q 015490          381 LN  382 (406)
Q Consensus       381 ~~  382 (406)
                      =|
T Consensus       316 Dp  317 (420)
T KOG2096|consen  316 DP  317 (420)
T ss_pred             Cc
Confidence            43

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.87  E-value=1.1e-20  Score=168.92  Aligned_cols=103  Identities=18%  Similarity=0.298  Sum_probs=90.7

Q ss_pred             EEEcCCCcEEEEEeCCCc-------eEEEEeeecCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCceEEEEeeccccc
Q 015490          273 AAITDRGASIVTWNTTTW-------KRIRTKQVVREPVSSFNVSA-DGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLG  344 (406)
Q Consensus       273 ~~~~~~~~~i~~~d~~~~-------~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  344 (406)
                      ++.+.+||.|++|.+..+       .+...+..|...|+++.|+| -...|++++.|.+|++||+.+++....+. +|.+
T Consensus       643 LAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~-gHtd  721 (1012)
T KOG1445|consen  643 LAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLV-GHTD  721 (1012)
T ss_pred             eeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheec-cCcC
Confidence            456678999999987643       34567788889999999999 45689999999999999999999988886 9999


Q ss_pred             ceEEEEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490          345 IVTALAFSYDSRALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       345 ~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~  376 (406)
                      .|.+++|||||+.+++.+.||+|++|+-++++
T Consensus       722 qIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e  753 (1012)
T KOG1445|consen  722 QIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE  753 (1012)
T ss_pred             ceeEEEECCCCcceeeeecCceEEEeCCCCCC
Confidence            99999999999999999999999999987754

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=2e-20  Score=160.61  Aligned_cols=238  Identities=14%  Similarity=0.204  Sum_probs=178.1

Q ss_pred             eEEEEccCCCeEEEEe----cCCeEEEEEecccccceeecceeccceeeeccccc-----CcEEEEEECC-------CCC
Q 015490          117 YRMAIHPHGDGIICAL----QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-----GQQLALTFDS-------EGT  180 (406)
Q Consensus       117 ~~~~~sp~~~~l~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~s~-------~g~  180 (406)
                      -.+..-|+...++++.    ...+.+|.++......               +-||     ....|++|..       .|+
T Consensus       129 de~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~nl---------------YvHHD~ilpafPLC~ewld~~~~~~~~gN  193 (463)
T KOG0270|consen  129 DEEQVKPSDNLILCARNEDDVSYLEVYVYNEEEENL---------------YVHHDFILPAFPLCIEWLDHGSKSGGAGN  193 (463)
T ss_pred             ccceeccCCcEEEEeeccCCceEEEEEEEcCCCcce---------------eEecceeccCcchhhhhhhcCCCCCCCcc
Confidence            3567778777777775    3456778776532111               1122     2335677643       357


Q ss_pred             EEEEeeCCCeEEEEeCCCcceE---------------------eeeeccCCceeEEEEccCC-CEEEEEeCCCCEEEEEc
Q 015490          181 IFAAGSENGNLRVFKWPSLEII---------------------LNESEAHASVKDLSFSPDG-KFLVSLGNRGPGRVWDL  238 (406)
Q Consensus       181 ~l~~~~~dg~i~vwd~~~~~~~---------------------~~~~~~~~~i~~~~~s~~~-~~l~s~s~d~~i~iwd~  238 (406)
                      ++|.|+.|..|.|||+.-...+                     ....+|...|.+++|+..- +.||+||.|.+|++||+
T Consensus       194 yvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~  273 (463)
T KOG0270|consen  194 YVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDV  273 (463)
T ss_pred             eEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEc
Confidence            9999999999999998421100                     0112455578889998754 47899999999999999


Q ss_pred             CCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCC-CEEEE
Q 015490          239 ASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADG-KLLAV  317 (406)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~-~~l~~  317 (406)
                      .++++...+. +++..|.++.|+|....     ++.+|+.|+++.+.|.|........-...+.|..++|.|.. ..+++
T Consensus       274 ~~g~p~~s~~-~~~k~Vq~l~wh~~~p~-----~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~  347 (463)
T KOG0270|consen  274 DTGKPKSSIT-HHGKKVQTLEWHPYEPS-----VLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFV  347 (463)
T ss_pred             CCCCcceehh-hcCCceeEEEecCCCce-----EEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEE
Confidence            9999999887 56677999999999986     67889999999999999533222222234679999999955 46677


Q ss_pred             EeCCCcEEEEECCCc-eEEEEeecccccceEEEEEcCC-CCeEEEEECCCcEEEEEecCCc
Q 015490          318 GTASGDISIIDSSSL-QVRTAVKKAHLGIVTALAFSYD-SRALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       318 ~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~sp~-~~~l~s~s~dg~i~iw~~~~~~  376 (406)
                      ++.||+|+-+|+++. +++.++. .|.++|.++++++. ..+|+|++.|+.|++|++..-.
T Consensus       348 ~tddG~v~~~D~R~~~~~vwt~~-AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~  407 (463)
T KOG0270|consen  348 STDDGTVYYFDIRNPGKPVWTLK-AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS  407 (463)
T ss_pred             ecCCceEEeeecCCCCCceeEEE-eccCCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence            788999999999875 8888886 99999999999986 4568899999999999996533

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.87  E-value=2e-20  Score=166.12  Aligned_cols=245  Identities=15%  Similarity=0.221  Sum_probs=190.6

Q ss_pred             cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCC--
Q 015490          104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGT--  180 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--  180 (406)
                      ..-..+.||++.|.++...|.|.+|++|+ ||+++||.+.              +..++++....+.|.|++|+|.+.  
T Consensus       391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~--------------TgRcvr~~~~d~~I~~vaw~P~~~~~  456 (733)
T KOG0650|consen  391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIA--------------TGRCVRTVQFDSEIRSVAWNPLSDLC  456 (733)
T ss_pred             eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEee--------------cceEEEEEeecceeEEEEecCCCCce
Confidence            44557899999999999999999999998 9999998776              556666667778999999999764  


Q ss_pred             EEEEeeCCCeEEEEeC---------------------------------CC---c-ceEeeeeccCCceeEEEEccCCCE
Q 015490          181 IFAAGSENGNLRVFKW---------------------------------PS---L-EIILNESEAHASVKDLSFSPDGKF  223 (406)
Q Consensus       181 ~l~~~~~dg~i~vwd~---------------------------------~~---~-~~~~~~~~~~~~i~~~~~s~~~~~  223 (406)
                      .||++-.+ .+.|.+.                                 ..   . .-+.....|...|..+.|+..|.+
T Consensus       457 vLAvA~~~-~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDY  535 (733)
T KOG0650|consen  457 VLAVAVGE-CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDY  535 (733)
T ss_pred             eEEEEecC-ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCce
Confidence            44444332 2333332                                 10   0 012233456668999999999999


Q ss_pred             EEEEeCC---CCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC
Q 015490          224 LVSLGNR---GPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR  300 (406)
Q Consensus       224 l~s~s~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~  300 (406)
                      |++...+   ..|.|.++........+... .+.+.++.|+|...+   + ++++   ...|++||+.....++.+....
T Consensus       536 latV~~~~~~~~VliHQLSK~~sQ~PF~ks-kG~vq~v~FHPs~p~---l-fVaT---q~~vRiYdL~kqelvKkL~tg~  607 (733)
T KOG0650|consen  536 LATVMPDSGNKSVLIHQLSKRKSQSPFRKS-KGLVQRVKFHPSKPY---L-FVAT---QRSVRIYDLSKQELVKKLLTGS  607 (733)
T ss_pred             EEEeccCCCcceEEEEecccccccCchhhc-CCceeEEEecCCCce---E-EEEe---ccceEEEehhHHHHHHHHhcCC
Confidence            9998653   46889999877766666443 345779999999885   3 3332   6789999999887777777777


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCc-eEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEe
Q 015490          301 EPVSSFNVSADGKLLAVGTASGDISIIDSSSL-QVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVI  372 (406)
Q Consensus       301 ~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~  372 (406)
                      ..|..++.+|.|..|++|+.|+.+..||++-. ++.+++ ..|...+++++|++.-.++++|+.||++.|+.-
T Consensus       608 kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~l-r~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg  679 (733)
T KOG0650|consen  608 KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTL-RLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHG  679 (733)
T ss_pred             eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHh-hhhhhhhhhhhhccccceeeeecCCCcEEEEee
Confidence            88999999999999999999999999999865 445555 479999999999999999999999999999863

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.87  E-value=9.8e-20  Score=154.72  Aligned_cols=285  Identities=13%  Similarity=0.185  Sum_probs=192.4

Q ss_pred             cEEEEEEecCCC---CccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccce-eecce-eccceee
Q 015490           88 AVLLSHFDFASN---SLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEI-RRLGV-KISEKVL  161 (406)
Q Consensus        88 ~~~~~~~~~~~~---~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~-~~~~~-~~~~~~~  161 (406)
                      .+.++.+.....   ......+..+..|+..|+++.|+|+|..|++|+ ++.+.+|.-........ ..... ++.-...
T Consensus        37 ~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~  116 (434)
T KOG1009|consen   37 DIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVK  116 (434)
T ss_pred             ceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEE
Confidence            456666554332   234466778999999999999999999999998 56666665441100000 00000 0012223


Q ss_pred             ecccc-cCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCC
Q 015490          162 SQLEN-VGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLAS  240 (406)
Q Consensus       162 ~~~~~-~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~  240 (406)
                      ..+.+ ...+..++|+|++.++++++.|..+++||+..|+....+..|..-+..++|.|-++++++-+.|...+.+.+..
T Consensus       117 k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~  196 (434)
T KOG1009|consen  117 KVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKL  196 (434)
T ss_pred             EEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeee
Confidence            33443 47899999999999999999999999999999999988888888999999999999999999998777777654


Q ss_pred             Ceeeeecc---------cC---------C----cceEEEEEEEcCCCCceEEEEEEEcC--C-----CcEEEEEeCCC-c
Q 015490          241 SAVATPLA---------KE---------N----DELFASCRFSPLNNEDYVLYIAAITD--R-----GASIVTWNTTT-W  290 (406)
Q Consensus       241 ~~~~~~~~---------~~---------~----~~~~~~~~~~~~~~~~~~l~~~~~~~--~-----~~~i~~~d~~~-~  290 (406)
                      .+......         .+         +    ......++|+|+|.-    ++.-.+.  .     -+..++++-.. .
T Consensus       197 ~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~l----lvtPag~~~~g~~~~~n~tYvfsrk~l~  272 (434)
T KOG1009|consen  197 KQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSL----LVTPAGLFKVGGGVFRNTSYVFSRKDLK  272 (434)
T ss_pred             eeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcE----EEcccceeeeCCceeeceeEeecccccc
Confidence            33222111         00         1    112456788898872    2211110  0     12234444322 2


Q ss_pred             eEEEEeeecCCCeEEEEEcC------------------CCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEc
Q 015490          291 KRIRTKQVVREPVSSFNVSA------------------DGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFS  352 (406)
Q Consensus       291 ~~~~~~~~~~~~i~~~~~sp------------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s  352 (406)
                      ++...+.....+...+.|+|                  -+-.+|+++ ...|++||.++..++.....-|-..++.++|+
T Consensus       273 rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws  351 (434)
T KOG1009|consen  273 RPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWS  351 (434)
T ss_pred             CceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeec
Confidence            23444444445555555554                  122345555 55799999999999988887899999999999


Q ss_pred             CCCCeEEEEECCCcEEEEEecCCcC
Q 015490          353 YDSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       353 p~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      +||.+|+..|.||...+-.++..+.
T Consensus       352 ~dg~~l~vSS~DGyCS~vtfe~~el  376 (434)
T KOG1009|consen  352 DDGSVLLVSSTDGFCSLVTFEPWEL  376 (434)
T ss_pred             CCCcEEEEeccCCceEEEEEcchhc
Confidence            9999999999999988887766543

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.86  E-value=5.3e-20  Score=166.62  Aligned_cols=249  Identities=17%  Similarity=0.206  Sum_probs=181.1

Q ss_pred             eEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECC------------CCCEEE
Q 015490          117 YRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDS------------EGTIFA  183 (406)
Q Consensus       117 ~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------------~g~~l~  183 (406)
                      .++.|.+....|.+.. |..+.|  ||..+...        ..++...+.|...|+.+.--|            .+ .|.
T Consensus       328 IA~~Fdet~~klscVYndhSlYv--WDvrD~~k--------vgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~-cF~  396 (1080)
T KOG1408|consen  328 IACQFDETTDKLSCVYNDHSLYV--WDVRDVNK--------VGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRG-CFT  396 (1080)
T ss_pred             eEEEecCCCceEEEEEcCceEEE--Eecccccc--------ccceeeeeeccceeeeeccccccccCcccccCCcc-cee
Confidence            4778999888888886 665555  44443322        222333344555555554333            22 488


Q ss_pred             EeeCCCeEEEEeCCCcc---eE----------------------------------eeeeccCCceeEEEEccCCCEEEE
Q 015490          184 AGSENGNLRVFKWPSLE---II----------------------------------LNESEAHASVKDLSFSPDGKFLVS  226 (406)
Q Consensus       184 ~~~~dg~i~vwd~~~~~---~~----------------------------------~~~~~~~~~i~~~~~s~~~~~l~s  226 (406)
                      +++.|++|++|++..+.   ..                                  .........+++++.+|+|++|++
T Consensus       397 TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAs  476 (1080)
T KOG1408|consen  397 TCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLAS  476 (1080)
T ss_pred             EecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecc
Confidence            99999999999985421   10                                  001112236899999999999999


Q ss_pred             EeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC-ceEEEEeeecC-----
Q 015490          227 LGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT-WKRIRTKQVVR-----  300 (406)
Q Consensus       227 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~-----  300 (406)
                      |..-|+++||++...+....+..| ...|.|+.|+...-.   .-++++++.|..|++||... ..++.++..|.     
T Consensus       477 GDr~GnlrVy~Lq~l~~~~~~eAH-esEilcLeyS~p~~~---~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITs  552 (1080)
T KOG1408|consen  477 GDRGGNLRVYDLQELEYTCFMEAH-ESEILCLEYSFPVLT---NKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITS  552 (1080)
T ss_pred             cCccCceEEEEehhhhhhhheecc-cceeEEEeecCchhh---hHhhhhccCCceEEEEecccccchhhhhcccccceeE
Confidence            999999999999888777777655 455778988754322   12678889999999999752 22233332222     


Q ss_pred             --------------------------------------------CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEE
Q 015490          301 --------------------------------------------EPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRT  336 (406)
Q Consensus       301 --------------------------------------------~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~  336 (406)
                                                                  ..++.|+..|..+++++++.|..|+|||+.+++..+
T Consensus       553 vKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k  632 (1080)
T KOG1408|consen  553 VKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVK  632 (1080)
T ss_pred             EEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceee
Confidence                                                        245677777888899999999999999999999999


Q ss_pred             Eeec--ccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCC
Q 015490          337 AVKK--AHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGG  380 (406)
Q Consensus       337 ~~~~--~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~  380 (406)
                      .++.  +|.+....+...|.|-||++.+.|.++.++|+.+++.++.
T Consensus       633 ~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~  678 (1080)
T KOG1408|consen  633 SFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ  678 (1080)
T ss_pred             eecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhh
Confidence            9873  4667788999999999999999999999999999988654

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.86  E-value=5.8e-19  Score=159.45  Aligned_cols=271  Identities=16%  Similarity=0.181  Sum_probs=187.4

Q ss_pred             ccceeEEecCCCCceEEEEccCCC---eEEEEe-cCCeEEEEEecccccc--ee--ecceeccce---e---e-------
Q 015490          103 DQPVAELRTDSDLPYRMAIHPHGD---GIICAL-QNSCRLFEWDEVENTE--IR--RLGVKISEK---V---L-------  161 (406)
Q Consensus       103 ~~~~~~~~~h~~~v~~~~~sp~~~---~l~~~~-~~~~~i~~~~~~~~~~--~~--~~~~~~~~~---~---~-------  161 (406)
                      -+.+..+.||++.|.+++|...+.   +|++++ |..+|||.+...+...  .+  .....+...   .   +       
T Consensus       181 f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~e  260 (764)
T KOG1063|consen  181 FARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFE  260 (764)
T ss_pred             eeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehh
Confidence            467889999999999999987654   444555 8899999887655222  00  011110100   0   0       


Q ss_pred             ecc-cccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc--ceEe--e---eeccCCceeEEEEccCCCEEEEEeCCCCE
Q 015490          162 SQL-ENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSL--EIIL--N---ESEAHASVKDLSFSPDGKFLVSLGNRGPG  233 (406)
Q Consensus       162 ~~~-~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~--~~~~--~---~~~~~~~i~~~~~s~~~~~l~s~s~d~~i  233 (406)
                      ..+ .|.+.|.++.|+|.+..|++++.|.++.+|...+.  --+.  .   ..+......+..|+|+++.+++-+.-|..
T Consensus       261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~  340 (764)
T KOG1063|consen  261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF  340 (764)
T ss_pred             hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence            112 45588999999999988999999999999987543  2111  1   11222368899999999999999999999


Q ss_pred             EEEEcCCCe--eeeecccCCcceEEEEEEEcCCCCceEEE----------------------------------------
Q 015490          234 RVWDLASSA--VATPLAKENDELFASCRFSPLNNEDYVLY----------------------------------------  271 (406)
Q Consensus       234 ~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------------------------------------  271 (406)
                      ++|......  ........|-..|..++|+|.|..  ++.                                        
T Consensus       341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGef--lLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~  418 (764)
T KOG1063|consen  341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEF--LLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE  418 (764)
T ss_pred             EEEeccCccceeeccccccccccceeeeecCCCCE--EEEeccccceeeecccccccceeeecccccccccceeeehccC
Confidence            999833221  122333445567899999999884  100                                        


Q ss_pred             --EEEEcCCCcEEEEEeCCC-------------------------------------------ce---------------
Q 015490          272 --IAAITDRGASIVTWNTTT-------------------------------------------WK---------------  291 (406)
Q Consensus       272 --~~~~~~~~~~i~~~d~~~-------------------------------------------~~---------------  291 (406)
                        ..+++.+...+++|+...                                           +.               
T Consensus       419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~  498 (764)
T KOG1063|consen  419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC  498 (764)
T ss_pred             CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence              011122223334433220                                           00               


Q ss_pred             ------------------EEEEeeecCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCceEEEEeecccccceEE
Q 015490          292 ------------------RIRTKQVVREPVSSFNVSADGKLLAVGTAS-----GDISIIDSSSLQVRTAVKKAHLGIVTA  348 (406)
Q Consensus       292 ------------------~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~v~~  348 (406)
                                        .+..+.+|...|++++.+|+|+++|+++..     ..|++|+..+......+. +|.-.|+.
T Consensus       499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~-~HsLTVT~  577 (764)
T KOG1063|consen  499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELE-GHSLTVTR  577 (764)
T ss_pred             hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheec-ccceEEEE
Confidence                              001122344589999999999999999874     359999999998888886 89999999


Q ss_pred             EEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490          349 LAFSYDSRALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       349 ~~~sp~~~~l~s~s~dg~i~iw~~~~~~  376 (406)
                      ++|||||++|++.|.|.++.+|......
T Consensus       578 l~FSpdg~~LLsvsRDRt~sl~~~~~~~  605 (764)
T KOG1063|consen  578 LAFSPDGRYLLSVSRDRTVSLYEVQEDI  605 (764)
T ss_pred             EEECCCCcEEEEeecCceEEeeeeeccc
Confidence            9999999999999999999999985543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.86  E-value=5.8e-18  Score=152.72  Aligned_cols=263  Identities=11%  Similarity=0.120  Sum_probs=169.6

Q ss_pred             cEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeeccc
Q 015490           88 AVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE  165 (406)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (406)
                      .+.++.++... .  ...+..+. +.+.+..++++|++++|++++  ++.+.+|.++ .++. ..         ......
T Consensus        13 ~I~~~~~~~~g-~--l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~-~~g~-l~---------~~~~~~   77 (330)
T PRK11028         13 QIHVWNLNHEG-A--LTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIA-DDGA-LT---------FAAESP   77 (330)
T ss_pred             CEEEEEECCCC-c--eeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEEC-CCCc-eE---------Eeeeec
Confidence            45666664321 2  13444443 346678999999999998875  5666667665 2221 11         111111


Q ss_pred             ccCcEEEEEECCCCCEEEEeeC-CCeEEEEeCCCcc----eEeeeeccCCceeEEEEccCCCEEEEEe-CCCCEEEEEcC
Q 015490          166 NVGQQLALTFDSEGTIFAAGSE-NGNLRVFKWPSLE----IILNESEAHASVKDLSFSPDGKFLVSLG-NRGPGRVWDLA  239 (406)
Q Consensus       166 ~~~~v~~~~~s~~g~~l~~~~~-dg~i~vwd~~~~~----~~~~~~~~~~~i~~~~~s~~~~~l~s~s-~d~~i~iwd~~  239 (406)
                      ..+....++|+|+++++++++. ++.|.+|++++..    ....+ .+......++++|+++++++++ .++.|.+||+.
T Consensus        78 ~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~  156 (330)
T PRK11028         78 LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLS  156 (330)
T ss_pred             CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEEC
Confidence            2234568999999998888764 7899999996432    12211 2223567889999999886655 56899999997


Q ss_pred             CCeeeee-----cccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC--c--eEEEEeeec------CCCeE
Q 015490          240 SSAVATP-----LAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT--W--KRIRTKQVV------REPVS  304 (406)
Q Consensus       240 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~--~--~~~~~~~~~------~~~i~  304 (406)
                      +...+..     .....+.....++|+|+++.     +.++...++.|.+||++.  +  +.+..+...      .....
T Consensus       157 ~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~-----lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  231 (330)
T PRK11028        157 DDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQY-----AYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAA  231 (330)
T ss_pred             CCCcccccCCCceecCCCCCCceEEECCCCCE-----EEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccce
Confidence            6332211     11112333567999999985     444455689999999873  2  223333221      11234


Q ss_pred             EEEEcCCCCEEEEEeC-CCcEEEEECCCce----EEEEeecccccceEEEEEcCCCCeEEEEEC-CCcEEEEEec
Q 015490          305 SFNVSADGKLLAVGTA-SGDISIIDSSSLQ----VRTAVKKAHLGIVTALAFSYDSRALVSASM-DSSVRVTVIE  373 (406)
Q Consensus       305 ~~~~sp~~~~l~~~~~-dg~i~i~d~~~~~----~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~-dg~i~iw~~~  373 (406)
                      .+.++|+|++++++.. ++.|.+|++....    .+.....  ......+.++|||++|+++.. +++|.+|+++
T Consensus       232 ~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~--~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        232 DIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT--ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             eEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec--cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            6889999999999865 7889999986432    2222221  124568999999999987775 8999999985

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=1.3e-20  Score=166.34  Aligned_cols=261  Identities=16%  Similarity=0.173  Sum_probs=192.2

Q ss_pred             ceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCCEE
Q 015490          105 PVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIF  182 (406)
Q Consensus       105 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l  182 (406)
                      +..++..|.+.++.++|+|....|++++ ++.+++|++......  .    ....+++.+++.| ++|.|++++++++.+
T Consensus       286 ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s--~----~~~~epi~tfraH~gPVl~v~v~~n~~~~  359 (577)
T KOG0642|consen  286 IKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS--A----EKDVEPILTFRAHEGPVLCVVVPSNGEHC  359 (577)
T ss_pred             eeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc--c----ccceeeeEEEecccCceEEEEecCCceEE
Confidence            3348899999999999999999999998 999999988321110  0    0034455666665 899999999999999


Q ss_pred             EEeeCCCeEEEEeCCCc----------ceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCC-
Q 015490          183 AAGSENGNLRVFKWPSL----------EIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKEN-  251 (406)
Q Consensus       183 ~~~~~dg~i~vwd~~~~----------~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~-  251 (406)
                      ++|+.||+|+.|++...          .....+.+|.+.|+.+++|+....|++++.||++++|+...... ..+.... 
T Consensus       360 ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e  438 (577)
T KOG0642|consen  360 YSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKE  438 (577)
T ss_pred             EeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccc
Confidence            99999999999976421          23345778888999999999999999999999999999876655 3332221 


Q ss_pred             cceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeec-------CCCeEEEEEcCCCCEEEEEeCCCcE
Q 015490          252 DELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVV-------REPVSSFNVSADGKLLAVGTASGDI  324 (406)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-------~~~i~~~~~sp~~~~l~~~~~dg~i  324 (406)
                      .....++.+-.....     ...+....+.-.++++.....+..+...       ...+..+.++|.+.+.+++..|+.|
T Consensus       439 ~g~Plsvd~~ss~~a-----~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~I  513 (577)
T KOG0642|consen  439 HGYPLSVDRTSSRPA-----HSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSI  513 (577)
T ss_pred             cCCcceEeeccchhH-----hhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCce
Confidence            122334444333311     1111122222333444443333333221       1346778899999999999999999


Q ss_pred             EEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCC
Q 015490          325 SIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKS  378 (406)
Q Consensus       325 ~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~  378 (406)
                      +++|..++.++.... .|...++++++.|+|.+|++++.|+.+++|.+.....+
T Consensus       514 r~~dn~~~~~l~s~~-a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~  566 (577)
T KOG0642|consen  514 RFFDNKTGKILHSMV-AHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCV  566 (577)
T ss_pred             ecccccccccchhee-eccceecceeecCCCceEEeecCCceeehhhccchhee
Confidence            999999999999886 89999999999999999999999999999999766543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.85  E-value=4.8e-18  Score=142.97  Aligned_cols=242  Identities=18%  Similarity=0.228  Sum_probs=180.3

Q ss_pred             CCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCC--CeE
Q 015490          114 DLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSEN--GNL  191 (406)
Q Consensus       114 ~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d--g~i  191 (406)
                      ..+..+.|+.+...|..|+....++|..+...             +..........|..+-||.+  ++|..+.+  ..+
T Consensus         6 ~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~-------------k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~L   70 (391)
T KOG2110|consen    6 PTINFIGFNQDSTLLSVGSKDGYKIFSCSPFE-------------KCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKL   70 (391)
T ss_pred             cceeeeeeccceeEEEccCCCceeEEecCchH-------------HhhcccCCCeEEEEeecccc--eeEEEecCCCceE
Confidence            44566779999888888885566888766431             11111222344566667654  55555443  358


Q ss_pred             EEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEE
Q 015490          192 RVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY  271 (406)
Q Consensus       192 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  271 (406)
                      +++++..+..+..+.- ...|.++.++.  ++|+++-.+ .|+|||+++.+.++++..-...+-..++++++....++. 
T Consensus        71 kv~~~Kk~~~ICe~~f-pt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylA-  145 (391)
T KOG2110|consen   71 KVVHFKKKTTICEIFF-PTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLA-  145 (391)
T ss_pred             EEEEcccCceEEEEec-CCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEE-
Confidence            9999888777766543 34688999865  367766665 499999999999998876533334456666665531121 


Q ss_pred             EEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCc-EEEEECCCceEEEEeecccc-cceEEE
Q 015490          272 IAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGD-ISIIDSSSLQVRTAVKKAHL-GIVTAL  349 (406)
Q Consensus       272 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~-~~v~~~  349 (406)
                       .-.....|.|.+||..+-+.+..+..|++.+.+++|+++|.+||++++.|+ |||+.+.+++.+.++.+|-. ..|.++
T Consensus       146 -yp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL  224 (391)
T KOG2110|consen  146 -YPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSL  224 (391)
T ss_pred             -ecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEE
Confidence             122344789999999999999999999999999999999999999999998 69999999999999976543 347799


Q ss_pred             EEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490          350 AFSYDSRALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       350 ~~sp~~~~l~s~s~dg~i~iw~~~~~~  376 (406)
                      +|+|++++|++.|..++|+++.++...
T Consensus       225 ~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  225 SFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             EECCCCCeEEEecCCCeEEEEEecccc
Confidence            999999999999999999999997643

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.84  E-value=4.1e-19  Score=159.80  Aligned_cols=259  Identities=12%  Similarity=0.142  Sum_probs=191.6

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccC
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVG  168 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (406)
                      .++.+|++.+    ..+.++++|.+.|+|++|+.||+.+++|+ |..+.+|.-..               +-+..+.|.+
T Consensus        34 rlliyD~ndG----~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---------------EG~LkYSH~D   94 (1081)
T KOG1538|consen   34 RLLVYDTSDG----TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---------------EGILKYSHND   94 (1081)
T ss_pred             EEEEEeCCCc----ccccccccccceEEEEEEccCCceeccCCCceeEEEecccc---------------cceeeeccCC
Confidence            5666777663    47889999999999999999999999997 77777765322               1223355778


Q ss_pred             cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeee-ec
Q 015490          169 QQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT-PL  247 (406)
Q Consensus       169 ~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~  247 (406)
                      .|.|+.|+|-.+.|++++-+ ..-+|..+..... .. .....+.+.+|..||++++.|-.+|+|.+-+-...+... .-
T Consensus        95 ~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~-K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~R  171 (1081)
T KOG1538|consen   95 AIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVS-KH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIER  171 (1081)
T ss_pred             eeeEeecCchHHHhhhcchh-hccccChhhhhHH-hh-hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeC
Confidence            99999999999999998764 5678886543222 11 123378999999999999999999999998754332222 23


Q ss_pred             ccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 015490          248 AKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISII  327 (406)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~  327 (406)
                      ++....++.+++|+|....... =+++..+.+.++.++.+.. +.+..-+.-.....|+.+.++|.++..|+.|+.+.+|
T Consensus       172 pgg~Nspiwsi~~~p~sg~G~~-di~aV~DW~qTLSFy~LsG-~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~f  249 (1081)
T KOG1538|consen  172 PGGSNSPIWSICWNPSSGEGRN-DILAVADWGQTLSFYQLSG-KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLF  249 (1081)
T ss_pred             CCCCCCCceEEEecCCCCCCcc-ceEEEEeccceeEEEEecc-eeecccccCCCCchhheeccCCcEEEEccCCCceEEE
Confidence            3456678999999997643111 1344446666666666653 3333222233455789999999999999999999999


Q ss_pred             ECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490          328 DSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIED  374 (406)
Q Consensus       328 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~  374 (406)
                      -. .|-.+.++- ....+|+.++..|++++++.|+.||+|.-|++-.
T Consensus       250 TR-~GvrLGTvg-~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  250 TR-DGVRLGTVG-EQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             ee-cCeEEeecc-ccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence            74 477777774 4677899999999999999999999999998753

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.84  E-value=1.4e-18  Score=147.27  Aligned_cols=218  Identities=12%  Similarity=0.131  Sum_probs=164.9

Q ss_pred             ceeEEecCCCCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCC-C
Q 015490          105 PVAELRTDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEG-T  180 (406)
Q Consensus       105 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g-~  180 (406)
                      ..-.+.||+++|..++|+|.....++++  |.++.||.+.  .+...+.+     .+++..+.+| ..|..++|+|.. +
T Consensus        73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IP--e~~l~~~l-----tepvv~L~gH~rrVg~V~wHPtA~N  145 (472)
T KOG0303|consen   73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIP--ENGLTRDL-----TEPVVELYGHQRRVGLVQWHPTAPN  145 (472)
T ss_pred             CCCCccCccccccccccCccCCceeecCCCCceEEEEECC--CcccccCc-----ccceEEEeecceeEEEEeecccchh
Confidence            3445789999999999999888766665  5556665543  33333322     2334444454 789999999965 7


Q ss_pred             EEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEE
Q 015490          181 IFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRF  260 (406)
Q Consensus       181 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  260 (406)
                      .|++++.|.+|.+|++.+++.+..+. |.+.|+++.|+.||.+|++++.|..|+|||.++++.+..-..|.+.....+.|
T Consensus       146 VLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raif  224 (472)
T KOG0303|consen  146 VLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIF  224 (472)
T ss_pred             hHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEE
Confidence            88999999999999999999888776 88899999999999999999999999999999999998887777766667788


Q ss_pred             EcCCCCceEEEEEEEcCCCcEEEEEeCCCceE---EEEeeecCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCceE
Q 015490          261 SPLNNEDYVLYIAAITDRGASIVTWNTTTWKR---IRTKQVVREPVSSFNVSADGKLLAVGTA-SGDISIIDSSSLQV  334 (406)
Q Consensus       261 ~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~~~~~  334 (406)
                      ..++.-   +..-.+...+..+-+||..+...   ..++.. .+.|.---|.+|.+.++.++. |+.|+.|.+.+..+
T Consensus       225 l~~g~i---~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P  298 (472)
T KOG0303|consen  225 LASGKI---FTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP  298 (472)
T ss_pred             eccCce---eeeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence            888762   22222334578899999876443   333332 345666678899888877665 99999999876553

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.84  E-value=7.3e-19  Score=143.15  Aligned_cols=258  Identities=16%  Similarity=0.201  Sum_probs=178.9

Q ss_pred             ccccccCCCCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCC---ccccceeEEe-cCCCCceEEEEccCCCeEEEEecC
Q 015490           59 VADKSDDIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNS---LSDQPVAELR-TDSDLPYRMAIHPHGDGIICALQN  134 (406)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~~~~~~  134 (406)
                      +=.....|.+.+.+.++-. ..+..|+-....++.+..+-+.   .+.+.+..+. .+-+.|.|+.|.|++..+++-.++
T Consensus        66 vw~las~P~d~~ilaT~yn-~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~dn  144 (370)
T KOG1007|consen   66 VWDLASSPFDQRILATVYN-DTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMDDN  144 (370)
T ss_pred             eehhhcCCCCCceEEEEEe-ccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEeccC
Confidence            3344445555565554422 1122334445566665544322   2234555554 566799999999999999998899


Q ss_pred             CeEEEEEecccccceeecceeccceeeecccccCcEEEEEECC--CCCEEEEeeCCCeEEEEeCCCcceEeeeeccCC-c
Q 015490          135 SCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDS--EGTIFAAGSENGNLRVFKWPSLEIILNESEAHA-S  211 (406)
Q Consensus       135 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~  211 (406)
                      .+.+|..+..... ...+..      .....+....++-+|||  ||+.+++. .|++++.||+++..+...+...++ .
T Consensus       145 ~i~l~~l~ess~~-vaev~s------s~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~  216 (370)
T KOG1007|consen  145 NIVLWSLDESSKI-VAEVLS------SESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQR  216 (370)
T ss_pred             ceEEEEcccCcch-heeecc------cccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcce
Confidence            9999887653221 111111      11122445678889999  78888775 578999999999988888776665 8


Q ss_pred             eeEEEEccCCC-EEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc
Q 015490          212 VKDLSFSPDGK-FLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW  290 (406)
Q Consensus       212 i~~~~~s~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~  290 (406)
                      |.++.|+|+.+ +|++|++||.|++||.+..+....-...|...+.++.|+|....     ++.+++.|..|.+|...+-
T Consensus       217 vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdq-----LiLs~~SDs~V~Lsca~sv  291 (370)
T KOG1007|consen  217 VRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQ-----LILSGGSDSAVNLSCASSV  291 (370)
T ss_pred             eeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccce-----EEEecCCCceeEEEecccc
Confidence            99999999876 68889999999999998765443333456778999999999887     6677888999999876421


Q ss_pred             -----------------------------eEEEEeeecCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECC
Q 015490          291 -----------------------------KRIRTKQVVREPVSSFNVSADGK-LLAVGTASGDISIIDSS  330 (406)
Q Consensus       291 -----------------------------~~~~~~~~~~~~i~~~~~sp~~~-~l~~~~~dg~i~i~d~~  330 (406)
                                                   ..+.++..|...|++++||.-.. .+|+-+.||.+.|=.+.
T Consensus       292 SSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  292 SSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             ccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence                                         12335666788999999998554 55667889998886654

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=1.6e-17  Score=132.16  Aligned_cols=248  Identities=11%  Similarity=0.125  Sum_probs=175.0

Q ss_pred             cceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccc-eee-cceeccceeeec-ccccCcEEEEEECCCCC
Q 015490          104 QPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTE-IRR-LGVKISEKVLSQ-LENVGQQLALTFDSEGT  180 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~-~~~-~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~  180 (406)
                      .++...++|.++|+.++|+  ..+|++++|+.++-|.|+...... .+. ...   ..+.+. .-.-..|+++...|..+
T Consensus        53 ~~iv~eqahdgpiy~~~f~--d~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~---~~P~~~~~~evPeINam~ldP~en  127 (325)
T KOG0649|consen   53 LKIVPEQAHDGPIYYLAFH--DDFLLSGGDGLVYGWEWNEEEESLATKRLWEV---KIPMQVDAVEVPEINAMWLDPSEN  127 (325)
T ss_pred             cceeeccccCCCeeeeeee--hhheeeccCceEEEeeehhhhhhccchhhhhh---cCccccCcccCCccceeEeccCCC
Confidence            4566779999999999998  467888889999999997543211 111 111   011111 11225689999999877


Q ss_pred             EEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccC---------C
Q 015490          181 IFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKE---------N  251 (406)
Q Consensus       181 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~---------~  251 (406)
                      -+++++.|+.++-||+++|+....+.+|.+-|.++.--.....+++|+.||++++||.++++++..+...         .
T Consensus       128 Si~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~  207 (325)
T KOG0649|consen  128 SILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDW  207 (325)
T ss_pred             cEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCccc
Confidence            7777778999999999999999999999999999998555557999999999999999999988876532         2


Q ss_pred             cceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 015490          252 DELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSS  331 (406)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~  331 (406)
                      +..+.+++-+.+        +++ ++....+.+|.+++.++...+... ..+..+.|..  ..+++++..+.|.-|.+. 
T Consensus       208 g~wigala~~ed--------Wlv-CGgGp~lslwhLrsse~t~vfpip-a~v~~v~F~~--d~vl~~G~g~~v~~~~l~-  274 (325)
T KOG0649|consen  208 GKWIGALAVNED--------WLV-CGGGPKLSLWHLRSSESTCVFPIP-ARVHLVDFVD--DCVLIGGEGNHVQSYTLN-  274 (325)
T ss_pred             CceeEEEeccCc--------eEE-ecCCCceeEEeccCCCceEEEecc-cceeEeeeec--ceEEEeccccceeeeeec-
Confidence            333444444332        222 345678999999999888887754 5678888874  468888888889999875 


Q ss_pred             ceEEEEeecccccceEEEEEcCCC-CeEEEEECCCcEEEE
Q 015490          332 LQVRTAVKKAHLGIVTALAFSYDS-RALVSASMDSSVRVT  370 (406)
Q Consensus       332 ~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~s~dg~i~iw  370 (406)
                      |....... ......++..|+... +++-.++..+++.|+
T Consensus       275 Gvl~a~ip-~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  275 GVLQANIP-VESTACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             cEEEEecc-CCccceeeecccCCceEEEEecccceeeeee
Confidence            44444443 333345555665443 445556666777765

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.82  E-value=1.6e-18  Score=141.35  Aligned_cols=246  Identities=13%  Similarity=0.165  Sum_probs=177.3

Q ss_pred             CCceEEEEcc--CC-CeEEEEe-----cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCC-----C
Q 015490          114 DLPYRMAIHP--HG-DGIICAL-----QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEG-----T  180 (406)
Q Consensus       114 ~~v~~~~~sp--~~-~~l~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-----~  180 (406)
                      -.++++.|+.  +. .+|+.|+     .+.+.|..++...++...          ...+.+..+++.+.|.|+.     .
T Consensus        45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~----------~a~fd~~YP~tK~~wiPd~~g~~pd  114 (364)
T KOG0290|consen   45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVE----------DANFDHPYPVTKLMWIPDSKGVYPD  114 (364)
T ss_pred             CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceec----------cCCCCCCCCccceEecCCccccCcc
Confidence            4567888883  33 3566665     466777777654443222          1236788999999999976     3


Q ss_pred             EEEEeeCCCeEEEEeCCCcceE----e-----eeeccCCceeEEEEcc-CCCEEEEEeCCCCEEEEEcCCCee--eeecc
Q 015490          181 IFAAGSENGNLRVFKWPSLEII----L-----NESEAHASVKDLSFSP-DGKFLVSLGNRGPGRVWDLASSAV--ATPLA  248 (406)
Q Consensus       181 ~l~~~~~dg~i~vwd~~~~~~~----~-----~~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~iwd~~~~~~--~~~~~  248 (406)
                      +||+.+  ..+++|.+...+..    .     +-..+..+++++.|+. |-++|.++|-|-+..|||++++..  +++..
T Consensus       115 lLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQL  192 (364)
T KOG0290|consen  115 LLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQL  192 (364)
T ss_pred             hhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEE
Confidence            666654  47999998632211    1     1112234899999986 667899999999999999998733  33322


Q ss_pred             cCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEE---EeeecCCCeEEEEEcC-CCCEEEEEeCC-Cc
Q 015490          249 KENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIR---TKQVVREPVSSFNVSA-DGKLLAVGTAS-GD  323 (406)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~---~~~~~~~~i~~~~~sp-~~~~l~~~~~d-g~  323 (406)
                      -.|+..|..++|...+..     +.++.+.||.++++|++..+.-.   +-.....+...++|++ |-+++|+-..| ..
T Consensus       193 IAHDKEV~DIaf~~~s~~-----~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~  267 (364)
T KOG0290|consen  193 IAHDKEVYDIAFLKGSRD-----VFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNK  267 (364)
T ss_pred             EecCcceeEEEeccCccc-----eEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCce
Confidence            345677999999998776     66788899999999999754322   2222245778899988 56788876664 56


Q ss_pred             EEEEECCC-ceEEEEeecccccceEEEEEcCC-CCeEEEEECCCcEEEEEecCCcC
Q 015490          324 ISIIDSSS-LQVRTAVKKAHLGIVTALAFSYD-SRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       324 i~i~d~~~-~~~~~~~~~~~~~~v~~~~~sp~-~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      |.|.|++. ..++..+. +|.+.|+.++|.|. ..+++|++.|..+.+||+.+.-.
T Consensus       268 V~iLDiR~P~tpva~L~-~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~  322 (364)
T KOG0290|consen  268 VVILDIRVPCTPVARLR-NHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR  322 (364)
T ss_pred             EEEEEecCCCcceehhh-cCcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence            99999986 45666774 89999999999996 57899999999999999986543

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=4.4e-18  Score=139.80  Aligned_cols=202  Identities=14%  Similarity=0.219  Sum_probs=153.9

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCC----cceEeeeeccCCceeEEEEcc--CCCEEEEEeCCCCEEEEEcC
Q 015490          166 NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPS----LEIILNESEAHASVKDLSFSP--DGKFLVSLGNRGPGRVWDLA  239 (406)
Q Consensus       166 ~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~----~~~~~~~~~~~~~i~~~~~s~--~~~~l~s~s~d~~i~iwd~~  239 (406)
                      |.+-|+++.|.+.|+.+|+|+.|++|+|||.+.    ..+......|.+.|..+.|.+  -|+.+|+++.|+++.||.-.
T Consensus        12 h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~   91 (361)
T KOG2445|consen   12 HKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQ   91 (361)
T ss_pred             CcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeec
Confidence            446689999999999999999999999999743    345667778888999999954  48899999999999999762


Q ss_pred             CC-------e--eeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC------ceEEEEee-------
Q 015490          240 SS-------A--VATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT------WKRIRTKQ-------  297 (406)
Q Consensus       240 ~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~------~~~~~~~~-------  297 (406)
                      ..       +  ...++ ......++.+.|.|....    +.+++.+.||.+++|+.-.      +.....+.       
T Consensus        92 ~~~~~~~~~~Wv~~ttl-~DsrssV~DV~FaP~hlG----LklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~  166 (361)
T KOG2445|consen   92 EKSEEAHGRRWVRRTTL-VDSRSSVTDVKFAPKHLG----LKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG  166 (361)
T ss_pred             ccccccccceeEEEEEe-ecCCcceeEEEecchhcc----eEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence            11       1  11222 234556899999998775    4567778999999998653      22333333       


Q ss_pred             ecCCCeEEEEEcCC---CCEEEEEeCC-----CcEEEEECCCc----eEEEEeecccccceEEEEEcCC-C---CeEEEE
Q 015490          298 VVREPVSSFNVSAD---GKLLAVGTAS-----GDISIIDSSSL----QVRTAVKKAHLGIVTALAFSYD-S---RALVSA  361 (406)
Q Consensus       298 ~~~~~i~~~~~sp~---~~~l~~~~~d-----g~i~i~d~~~~----~~~~~~~~~~~~~v~~~~~sp~-~---~~l~s~  361 (406)
                      .+..+..|+.|+|.   ..+||+|+.+     +.++||.....    ..+.++. +|..+|++++|.|+ |   ..|+++
T Consensus       167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~-d~~dpI~di~wAPn~Gr~y~~lAvA  245 (361)
T KOG2445|consen  167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP-DHTDPIRDISWAPNIGRSYHLLAVA  245 (361)
T ss_pred             cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC-CCCCcceeeeeccccCCceeeEEEe
Confidence            23456789999983   4688888875     47889876543    3455565 89999999999996 2   468999


Q ss_pred             ECCCcEEEEEecC
Q 015490          362 SMDSSVRVTVIED  374 (406)
Q Consensus       362 s~dg~i~iw~~~~  374 (406)
                      +.|| |+||++..
T Consensus       246 ~kDg-v~I~~v~~  257 (361)
T KOG2445|consen  246 TKDG-VRIFKVKV  257 (361)
T ss_pred             ecCc-EEEEEEee
Confidence            9999 99999984

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.81  E-value=1.6e-18  Score=139.38  Aligned_cols=250  Identities=16%  Similarity=0.172  Sum_probs=174.7

Q ss_pred             cccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCC
Q 015490          102 SDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGT  180 (406)
Q Consensus       102 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  180 (406)
                      ++.|...+++|...|+++.|-.+++ |++|. .|.+.+|.+..+....            .....+...|+.+.--|+ .
T Consensus         3 pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~------------~~r~~g~~~it~lq~~p~-d   68 (323)
T KOG0322|consen    3 PPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLP------------LIRLFGRLFITNLQSIPN-D   68 (323)
T ss_pred             CCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccch------------hhhhhccceeeceeecCC-c
Confidence            3568888999999999999988776 66665 7788888776542211            111123456777777776 3


Q ss_pred             EEEEeeCCCeEEEEeCCCcceE--------------eee----------------------------------e-----c
Q 015490          181 IFAAGSENGNLRVFKWPSLEII--------------LNE----------------------------------S-----E  207 (406)
Q Consensus       181 ~l~~~~~dg~i~vwd~~~~~~~--------------~~~----------------------------------~-----~  207 (406)
                      .+.+-++|+.+.+|++.-+..+              ..+                                  .     .
T Consensus        69 ~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~  148 (323)
T KOG0322|consen   69 SLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERS  148 (323)
T ss_pred             chhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhcc
Confidence            4667778888888886431100              000                                  0     0


Q ss_pred             cCCceeEEEEcc-CCC--EEEEEeCCCCEEEEEcCCCeeeeeccc---------CCcceEEEEEEEcCCCCceEEEEEEE
Q 015490          208 AHASVKDLSFSP-DGK--FLVSLGNRGPGRVWDLASSAVATPLAK---------ENDELFASCRFSPLNNEDYVLYIAAI  275 (406)
Q Consensus       208 ~~~~i~~~~~s~-~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~~~~  275 (406)
                      ..+.+.+..|.- +++  ++++|-++|.+.+||+.++..+..++.         .+..++.++.|.+....      -++
T Consensus       149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~r------Gis  222 (323)
T KOG0322|consen  149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDR------GIS  222 (323)
T ss_pred             ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcC------CcC
Confidence            011334444322 233  455677899999999998854443332         34556778888765443      355


Q ss_pred             cCCCcEEEEEeCCCc--e--EEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEE
Q 015490          276 TDRGASIVTWNTTTW--K--RIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAF  351 (406)
Q Consensus       276 ~~~~~~i~~~d~~~~--~--~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~  351 (406)
                      ++.+..+..|.++..  .  ...........+..+..-||++.+|+++.|+.||||+.++.+++..+. .|.+.|++++|
T Consensus       223 gga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk-yHsagvn~vAf  301 (323)
T KOG0322|consen  223 GGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK-YHSAGVNAVAF  301 (323)
T ss_pred             CCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh-hhhcceeEEEe
Confidence            666777888877532  2  222333334568889999999999999999999999999999999996 89999999999


Q ss_pred             cCCCCeEEEEECCCcEEEEEe
Q 015490          352 SYDSRALVSASMDSSVRVTVI  372 (406)
Q Consensus       352 sp~~~~l~s~s~dg~i~iw~~  372 (406)
                      +|+...++++|.|++|.+|++
T Consensus       302 spd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  302 SPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             CCCCchhhhccCCceEEeeec
Confidence            999999999999999999997

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.80  E-value=1.8e-17  Score=140.64  Aligned_cols=201  Identities=16%  Similarity=0.226  Sum_probs=160.7

Q ss_pred             ccCcEEEEEECC-CCCEEEEeeCCCeEEEEeCCCc-------ceEeeeeccCCceeEEEEccCC-CEEEEEeCCCCEEEE
Q 015490          166 NVGQQLALTFDS-EGTIFAAGSENGNLRVFKWPSL-------EIILNESEAHASVKDLSFSPDG-KFLVSLGNRGPGRVW  236 (406)
Q Consensus       166 ~~~~v~~~~~s~-~g~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~i~~~~~s~~~-~~l~s~s~d~~i~iw  236 (406)
                      |.++|..++|+| +.+.+|+|++|.+|.||++..+       +.+..+.+|...|..++|+|.. +.|++++.|.+|.+|
T Consensus        80 Ht~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iW  159 (472)
T KOG0303|consen   80 HTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIW  159 (472)
T ss_pred             ccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEE
Confidence            558999999999 5688999999999999998543       2456677888899999999964 578899999999999


Q ss_pred             EcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCC-CeEEEEEcCCCCEE
Q 015490          237 DLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVRE-PVSSFNVSADGKLL  315 (406)
Q Consensus       237 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~i~~~~~sp~~~~l  315 (406)
                      |+.+++.+..+.  |...+.++.|+.+|..      +++.+.|..|++||.++++.+..-..|.+ .-..+.|-.+|..+
T Consensus       160 nv~tgeali~l~--hpd~i~S~sfn~dGs~------l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~  231 (472)
T KOG0303|consen  160 NVGTGEALITLD--HPDMVYSMSFNRDGSL------LCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIF  231 (472)
T ss_pred             eccCCceeeecC--CCCeEEEEEeccCCce------eeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCcee
Confidence            999999888876  6778999999999983      67778999999999999999988877753 34566777888866


Q ss_pred             EEEeC---CCcEEEEECCCceE---EEEeecccccceEEEEEcCCCCeEEE-EECCCcEEEEEecCCc
Q 015490          316 AVGTA---SGDISIIDSSSLQV---RTAVKKAHLGIVTALAFSYDSRALVS-ASMDSSVRVTVIEDKK  376 (406)
Q Consensus       316 ~~~~~---dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~sp~~~~l~s-~s~dg~i~iw~~~~~~  376 (406)
                      -+|..   +..+-+||..+.+.   ...+.  .+..|.---|.+|.+.+.. |-.|+.||.|.+.+..
T Consensus       232 tTGfsr~seRq~aLwdp~nl~eP~~~~elD--tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  232 TTGFSRMSERQIALWDPNNLEEPIALQELD--TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             eeccccccccceeccCcccccCcceeEEec--cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            55543   77899999876443   23332  4455666678888887754 4579999999997654

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=1.7e-18  Score=144.20  Aligned_cols=231  Identities=13%  Similarity=0.161  Sum_probs=163.5

Q ss_pred             CeEEEE-ecCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECC--CCCEEEEeeCCCeEEEEeCCCcce
Q 015490          126 DGIICA-LQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDS--EGTIFAAGSENGNLRVFKWPSLEI  201 (406)
Q Consensus       126 ~~l~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~--~g~~l~~~~~dg~i~vwd~~~~~~  201 (406)
                      ..++++ +.+.+++|++..  ++            .++.+..+ ..++.++|..  ....+.+++.||+|++||++....
T Consensus        41 ~~vav~lSngsv~lyd~~t--g~------------~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e  106 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGT--GQ------------LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE  106 (376)
T ss_pred             eeEEEEecCCeEEEEeccc--hh------------hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh
Confidence            445555 489999998874  22            23333333 5567788876  457899999999999999987665


Q ss_pred             Eeee--eccC-CceeEEEEccCCCEEEEEeC----CCCEEEEEcCCCee-eeecccCCcceEEEEEEEcCCCCceEEEEE
Q 015490          202 ILNE--SEAH-ASVKDLSFSPDGKFLVSLGN----RGPGRVWDLASSAV-ATPLAKENDELFASCRFSPLNNEDYVLYIA  273 (406)
Q Consensus       202 ~~~~--~~~~-~~i~~~~~s~~~~~l~s~s~----d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  273 (406)
                      ...+  ..+. .+..+++.+-.++.+++|+.    +-.+.+||++..+. +..+...|...|+++.|+|....     ++
T Consensus       107 ~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pn-----lL  181 (376)
T KOG1188|consen  107 SARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPN-----LL  181 (376)
T ss_pred             hhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCC-----eE
Confidence            4433  3333 26677777767778887753    66799999998776 77777777778999999999997     77


Q ss_pred             EEcCCCcEEEEEeCCCceE---EEEeeecCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCceEEE-------------
Q 015490          274 AITDRGASIVTWNTTTWKR---IRTKQVVREPVSSFNVSADG-KLLAVGTASGDISIIDSSSLQVRT-------------  336 (406)
Q Consensus       274 ~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~i~~~~~sp~~-~~l~~~~~dg~i~i~d~~~~~~~~-------------  336 (406)
                      ++++-||.|.++|+.....   +...-.+...|.++.|..++ +.|.+-+...+..+|++..+....             
T Consensus       182 lSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r  261 (376)
T KOG1188|consen  182 LSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLR  261 (376)
T ss_pred             EeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHH
Confidence            8999999999999975422   22222344567778887665 346666667777777765433211             


Q ss_pred             ------------------------------------------------EeecccccceEEEEEcCCCCeEEEEECCCcEE
Q 015490          337 ------------------------------------------------AVKKAHLGIVTALAFSYDSRALVSASMDSSVR  368 (406)
Q Consensus       337 ------------------------------------------------~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~  368 (406)
                                                                      .+..+|..-|+++.|...+.++.||+.||.+.
T Consensus       262 ~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~  341 (376)
T KOG1188|consen  262 KEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQ  341 (376)
T ss_pred             hhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEE
Confidence                                                            11133555677777777788999999999999


Q ss_pred             EEEecCC
Q 015490          369 VTVIEDK  375 (406)
Q Consensus       369 iw~~~~~  375 (406)
                      +|..+..
T Consensus       342 ~Wk~~da  348 (376)
T KOG1188|consen  342 AWKVEDA  348 (376)
T ss_pred             EEecCCc
Confidence            9997443

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.80  E-value=4.8e-18  Score=140.80  Aligned_cols=252  Identities=13%  Similarity=0.159  Sum_probs=182.8

Q ss_pred             EecCCCCceEEEEcc----C-CCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCC----C
Q 015490          109 LRTDSDLPYRMAIHP----H-GDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSE----G  179 (406)
Q Consensus       109 ~~~h~~~v~~~~~sp----~-~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----g  179 (406)
                      ...|..++..++|++    + -..+++++.+.+.+|....+.+....+.        ...-.+......++|+-|    .
T Consensus        34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~--------y~D~d~~Esfytcsw~yd~~~~~  105 (385)
T KOG1034|consen   34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQS--------YADEDHDESFYTCSWSYDSNTGN  105 (385)
T ss_pred             hccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeee--------ccCCCCCcceEEEEEEecCCCCC
Confidence            457889999999985    2 2345556688888888876542111110        011123355677788653    3


Q ss_pred             CEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCC-CEEEEEeCCCCEEEEEcCCCeeeeeccc--CCcceEE
Q 015490          180 TIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDG-KFLVSLGNRGPGRVWDLASSAVATPLAK--ENDELFA  256 (406)
Q Consensus       180 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~--~~~~~~~  256 (406)
                      .++|+|+.-|.|+|.|+.++++...+.+|...|+.+.++|+. ++++++|.|.+|++|++++..++..+.+  .|...|.
T Consensus       106 p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVL  185 (385)
T KOG1034|consen  106 PFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVL  185 (385)
T ss_pred             eeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEE
Confidence            588999999999999999999999999999999999999975 6899999999999999999999988864  4556688


Q ss_pred             EEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEE----------------------------EeeecCCCeEEEEE
Q 015490          257 SCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIR----------------------------TKQVVREPVSSFNV  308 (406)
Q Consensus       257 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~----------------------------~~~~~~~~i~~~~~  308 (406)
                      ++.|++++.+      +++++.|..|++|++...+...                            +...|...|.|+.|
T Consensus       186 SvD~~~~gd~------i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw  259 (385)
T KOG1034|consen  186 SVDFSLDGDR------IASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW  259 (385)
T ss_pred             EEEEcCCCCe------eeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH
Confidence            9999999985      6788999999999998422100                            11223444455555


Q ss_pred             cCCCCEEEEEeCCCcEEEEECC-Cce-------------EEEEeecccccceEEEEE--cCCCCeEEEEECCCcEEEEEe
Q 015490          309 SADGKLLAVGTASGDISIIDSS-SLQ-------------VRTAVKKAHLGIVTALAF--SYDSRALVSASMDSSVRVTVI  372 (406)
Q Consensus       309 sp~~~~l~~~~~dg~i~i~d~~-~~~-------------~~~~~~~~~~~~v~~~~~--sp~~~~l~s~s~dg~i~iw~~  372 (406)
                      -  |+++++-+-++.|..|... -.+             .+..+. .....|+-+.|  .|-+++||.|...|.|.+||+
T Consensus       260 ~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~-~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL  336 (385)
T KOG1034|consen  260 F--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFD-YPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDL  336 (385)
T ss_pred             H--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEec-cCccceEEEEEeecHHHHHHhhccCCCcEEEEEC
Confidence            4  6788888888999999872 111             122222 23445565554  555889999999999999999


Q ss_pred             cCCcC
Q 015490          373 EDKKK  377 (406)
Q Consensus       373 ~~~~~  377 (406)
                      +..++
T Consensus       337 ~~~ep  341 (385)
T KOG1034|consen  337 DNNEP  341 (385)
T ss_pred             CCCCC
Confidence            88765

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.80  E-value=1.9e-16  Score=147.71  Aligned_cols=250  Identities=29%  Similarity=0.423  Sum_probs=198.2

Q ss_pred             EEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccc-c-CcEEEEEE-CCCCC-EE
Q 015490          108 ELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLEN-V-GQQLALTF-DSEGT-IF  182 (406)
Q Consensus       108 ~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~v~~~~~-s~~g~-~l  182 (406)
                      ....|...+.++.+.+.+..++.++ ++.+.+|......             .....+.. + ..+..+.+ ++++. .+
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-------------KLIKSLEGLHDSSVSKLALSSPDGNSIL  126 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc-------------eeEEEEeccCCCceeeEEEECCCcceEE
Confidence            5678999999999999999988886 8888887776432             01111222 1 35666666 88887 55


Q ss_pred             EEeeC-CCeEEEEeCCC-cceEeeeeccCCceeEEEEccCCCEEEEEeC-CCCEEEEEcCCCeeeeecccCCcceEEEEE
Q 015490          183 AAGSE-NGNLRVFKWPS-LEIILNESEAHASVKDLSFSPDGKFLVSLGN-RGPGRVWDLASSAVATPLAKENDELFASCR  259 (406)
Q Consensus       183 ~~~~~-dg~i~vwd~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  259 (406)
                      +..+. |+.+.+|+... ......+..|...|..++|+|+++.+++++. |+.+++|++..+.....+.. +...+.+++
T Consensus       127 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~  205 (466)
T COG2319         127 LASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG-HTDPVSSLA  205 (466)
T ss_pred             eccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeecc-CCCceEEEE
Confidence            55444 99999999987 7777788888889999999999998888886 99999999998777777765 456788999


Q ss_pred             EEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEE-EeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceE-EEE
Q 015490          260 FSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIR-TKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQV-RTA  337 (406)
Q Consensus       260 ~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~-~~~  337 (406)
                      |+|++..     ++++.+.++.+.+||...+.... .+..|.... ...|+|++.++++++.|+.+++|++..... ...
T Consensus       206 ~~~~~~~-----~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  279 (466)
T COG2319         206 FSPDGGL-----LIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT  279 (466)
T ss_pred             EcCCcce-----EEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEE
Confidence            9988862     34446889999999998777777 577776654 338999998999999999999999987664 444


Q ss_pred             eecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCC
Q 015490          338 VKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKS  378 (406)
Q Consensus       338 ~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~  378 (406)
                      + ..|...+.++.|.|++..+++++.|+.+++|++.+....
T Consensus       280 ~-~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  319 (466)
T COG2319         280 L-SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLL  319 (466)
T ss_pred             E-ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceE
Confidence            4 478899999999998888988999999999988876643

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.80  E-value=4.6e-17  Score=134.76  Aligned_cols=233  Identities=13%  Similarity=0.141  Sum_probs=167.1

Q ss_pred             CCCceEEEEc-------cCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc---CcEEEEEECCCCCE
Q 015490          113 SDLPYRMAIH-------PHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV---GQQLALTFDSEGTI  181 (406)
Q Consensus       113 ~~~v~~~~~s-------p~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~g~~  181 (406)
                      ...|+..+|-       |+..++++++ +.-+.+|+.  -+++....+         +.+.|.   ....+++|+|||.+
T Consensus       104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wda--ftG~lraSy---------~~ydh~de~taAhsL~Fs~DGeq  172 (406)
T KOG2919|consen  104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDA--FTGKLRASY---------RAYDHQDEYTAAHSLQFSPDGEQ  172 (406)
T ss_pred             CCEEEEEEeeeccccCCCccceeeeccccCceeeeec--cccccccch---------hhhhhHHhhhhheeEEecCCCCe
Confidence            4567777775       5666666665 777777654  334322221         122232   34578999999999


Q ss_pred             EEEeeCCCeEEEEeC-CCcceE--eeee-----ccCCceeEEEEccC-CCEEEEEeCCCCEEEEEcCCCeeeeecccCCc
Q 015490          182 FAAGSENGNLRVFKW-PSLEII--LNES-----EAHASVKDLSFSPD-GKFLVSLGNRGPGRVWDLASSAVATPLAKEND  252 (406)
Q Consensus       182 l~~~~~dg~i~vwd~-~~~~~~--~~~~-----~~~~~i~~~~~s~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~  252 (406)
                      |++| ....|++||+ +.|...  ....     +..+.|.+++|+|- .+.+++++...++-||.-..+.++..+-+ +.
T Consensus       173 lfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llgg-h~  250 (406)
T KOG2919|consen  173 LFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGG-HG  250 (406)
T ss_pred             Eeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecc-cC
Confidence            9876 4579999999 555421  1111     22347899999995 45899999999999998888888877764 55


Q ss_pred             ceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc-eEEEEeeecCC---CeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 015490          253 ELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW-KRIRTKQVVRE---PVSSFNVSADGKLLAVGTASGDISIID  328 (406)
Q Consensus       253 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~---~i~~~~~sp~~~~l~~~~~dg~i~i~d  328 (406)
                      ..|+.+.|.++|++     +...+..+..|..||++.. .++..+..|..   .-.-....|++++|++|+.||.|++||
T Consensus       251 gGvThL~~~edGn~-----lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwd  325 (406)
T KOG2919|consen  251 GGVTHLQWCEDGNK-----LFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWD  325 (406)
T ss_pred             CCeeeEEeccCcCe-----ecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEe
Confidence            67999999999997     4455567889999999864 34555555533   222355578999999999999999999


Q ss_pred             CCC-ceEEEEeecccccceEEEEEcCCCCeEEEEECC
Q 015490          329 SSS-LQVRTAVKKAHLGIVTALAFSYDSRALVSASMD  364 (406)
Q Consensus       329 ~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d  364 (406)
                      +++ +..+..+. .|...++.++++|-=..+++++..
T Consensus       326 lk~~gn~~sv~~-~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  326 LKDLGNEVSVTG-NYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             cCCCCCcccccc-cccccccceecCcccceeeeccCc
Confidence            998 66566664 789999999999987777777643

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.80  E-value=2.1e-17  Score=153.64  Aligned_cols=234  Identities=16%  Similarity=0.174  Sum_probs=157.0

Q ss_pred             EEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeecccc
Q 015490           89 VLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLEN  166 (406)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (406)
                      ..++.+|.+..     ....+..|...+.+.+|+|||+.|+.++  ++.-.||.|+..+++..          .+..+. 
T Consensus       184 ~~i~i~d~dg~-----~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~----------~l~~~~-  247 (429)
T PRK01742        184 YEVRVADYDGF-----NQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK----------VVASFR-  247 (429)
T ss_pred             EEEEEECCCCC-----CceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE----------EEecCC-
Confidence            45666665542     2355677888999999999999998876  33456777776543211          111122 


Q ss_pred             cCcEEEEEECCCCCEEEEee-CCCeEEEE--eCCCcceEeeeeccCCceeEEEEccCCCEEEEEe-CCCCEEEEEcCCC-
Q 015490          167 VGQQLALTFDSEGTIFAAGS-ENGNLRVF--KWPSLEIILNESEAHASVKDLSFSPDGKFLVSLG-NRGPGRVWDLASS-  241 (406)
Q Consensus       167 ~~~v~~~~~s~~g~~l~~~~-~dg~i~vw--d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s-~d~~i~iwd~~~~-  241 (406)
                       +....++|+|||+.|+.++ .+|.+.||  |+.+++. ..+..+...+..+.|+|||+.|+.++ .++...||++... 
T Consensus       248 -g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~  325 (429)
T PRK01742        248 -GHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG  325 (429)
T ss_pred             -CccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence             2234689999999888764 67765555  6655554 34555555788999999999877665 5778888876532 


Q ss_pred             eeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCC
Q 015490          242 AVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAS  321 (406)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d  321 (406)
                      .....+ .+..   ....|+|+++.     ++..+ .+ .+.+||+.+++.......  ....++.|+|||++|+.++.+
T Consensus       326 ~~~~~l-~~~~---~~~~~SpDG~~-----ia~~~-~~-~i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~  392 (429)
T PRK01742        326 GGASLV-GGRG---YSAQISADGKT-----LVMIN-GD-NVVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQ  392 (429)
T ss_pred             CCeEEe-cCCC---CCccCCCCCCE-----EEEEc-CC-CEEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcC
Confidence            222222 2222   35789999985     32332 23 466699988765432222  234578899999999999999


Q ss_pred             CcEEEEEC--CCceEEEEeecccccceEEEEEcCC
Q 015490          322 GDISIIDS--SSLQVRTAVKKAHLGIVTALAFSYD  354 (406)
Q Consensus       322 g~i~i~d~--~~~~~~~~~~~~~~~~v~~~~~sp~  354 (406)
                      +.+.+|++  .+++....+. .|.+.+..++|+|-
T Consensus       393 g~~~~l~~~~~~G~~~~~l~-~~~g~~~~p~wsp~  426 (429)
T PRK01742        393 GLGKVLQLVSADGRFKARLP-GSDGQVKFPAWSPY  426 (429)
T ss_pred             CCceEEEEEECCCCceEEcc-CCCCCCCCcccCCC
Confidence            88887775  3577777775 78888999999984

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.79  E-value=1.7e-17  Score=147.70  Aligned_cols=199  Identities=15%  Similarity=0.215  Sum_probs=163.2

Q ss_pred             cccccCcEEEEEECCCCCEEEEeeCC---CeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcC
Q 015490          163 QLENVGQQLALTFDSEGTIFAAGSEN---GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLA  239 (406)
Q Consensus       163 ~~~~~~~v~~~~~s~~g~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~  239 (406)
                      .+.+...|..+.|+..|.||++...+   ..|.|+++........+....+.|.++.|+|...+|++++.. .|+|||+.
T Consensus       517 ~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~  595 (733)
T KOG0650|consen  517 VIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLS  595 (733)
T ss_pred             EEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc-ceEEEehh
Confidence            34566789999999999999997553   579999998777666666677789999999999999888854 89999998


Q ss_pred             CCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc-eEEEEeeecCCCeEEEEEcCCCCEEEEE
Q 015490          240 SSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW-KRIRTKQVVREPVSSFNVSADGKLLAVG  318 (406)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~  318 (406)
                      ....++.+... ...+..++.+|.|.+      +..++.++.+..+|+.-. ++.+++..|...+++++|++.-.++++|
T Consensus       596 kqelvKkL~tg-~kwiS~msihp~GDn------li~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~  668 (733)
T KOG0650|consen  596 KQELVKKLLTG-SKWISSMSIHPNGDN------LILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASG  668 (733)
T ss_pred             HHHHHHHHhcC-CeeeeeeeecCCCCe------EEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeee
Confidence            87777776643 456889999999986      345578999999998643 6788889999999999999999999999


Q ss_pred             eCCCcEEEEECC------C---ceEEEEeecccccc----eEEEEEcCCCCeEEEEECCCcEEEE
Q 015490          319 TASGDISIIDSS------S---LQVRTAVKKAHLGI----VTALAFSYDSRALVSASMDSSVRVT  370 (406)
Q Consensus       319 ~~dg~i~i~d~~------~---~~~~~~~~~~~~~~----v~~~~~sp~~~~l~s~s~dg~i~iw  370 (406)
                      +.||++.||--.      .   --++..+. +|...    |..+.|+|...+|++++.||+|++|
T Consensus       669 sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~-gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  669 SDDGTVIVFHGMVYNDLLQNPLIVPLKRLR-GHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             cCCCcEEEEeeeeehhhhcCCceEeeeecc-CceeecccceEeecccCCCceEEecCCCceEEee
Confidence            999999988532      1   12344453 77655    8899999999999999999999998

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=9.5e-18  Score=142.17  Aligned_cols=261  Identities=13%  Similarity=0.116  Sum_probs=188.8

Q ss_pred             ceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccc--cCcEEEEEECCCCCE
Q 015490          105 PVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLEN--VGQQLALTFDSEGTI  181 (406)
Q Consensus       105 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~g~~  181 (406)
                      ....+.+|.+.|.++.|+.++++|++|+ |..+++|..+..--..        ..++++...+  ...|.|++|....++
T Consensus        48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k--------~~KPI~~~~~~H~SNIF~L~F~~~N~~  119 (609)
T KOG4227|consen   48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRK--------TPKPIGVMEHPHRSNIFSLEFDLENRF  119 (609)
T ss_pred             hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhc--------CCCCceeccCccccceEEEEEccCCee
Confidence            3445789999999999999999999998 7788888776321111        2233333333  378999999999999


Q ss_pred             EEEeeCCCeEEEEeCCCcceEeeeeccC--CceeEEEEccCCCEEEEEeCCCCEEEEEcCCCe-eee-ecccCCcceEEE
Q 015490          182 FAAGSENGNLRVFKWPSLEIILNESEAH--ASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSA-VAT-PLAKENDELFAS  257 (406)
Q Consensus       182 l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~-~~~-~~~~~~~~~~~~  257 (406)
                      +++|..+++|...|+++.+.+.......  +.|+.+..+|..+.|++.+.++.|.+||.+... ... .+..........
T Consensus       120 ~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t  199 (609)
T KOG4227|consen  120 LYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYT  199 (609)
T ss_pred             EecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCcccee
Confidence            9999999999999999988876554332  389999999999999999999999999998765 222 122234455778


Q ss_pred             EEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceE-EEE------eeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 015490          258 CRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKR-IRT------KQVVREPVSSFNVSADGKLLAVGTASGDISIIDSS  330 (406)
Q Consensus       258 ~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~-~~~------~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~  330 (406)
                      +.|+|....     ++++.+..+.+-+||.+.... +..      +........++.|+|+|+.+.+--....-.+||+.
T Consensus       200 ~~F~P~~P~-----Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~  274 (609)
T KOG4227|consen  200 AEFHPETPA-----LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFI  274 (609)
T ss_pred             eeecCCCce-----eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeee
Confidence            999999886     556667788899999986432 111      11111234678899999988776555556678887


Q ss_pred             CceE-EEEeeccccc-------ceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490          331 SLQV-RTAVKKAHLG-------IVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       331 ~~~~-~~~~~~~~~~-------~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~  381 (406)
                      +.++ +..+  .|+.       .+.+++|..| ..+++|+.+-.|++|.+......+.|
T Consensus       275 S~R~~V~k~--D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~  330 (609)
T KOG4227|consen  275 SQRCFVLKS--DHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGF  330 (609)
T ss_pred             cccceeEec--cCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCc
Confidence            6443 3333  3432       3667888765 44999999999999999765554443

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.78  E-value=2.4e-17  Score=147.88  Aligned_cols=246  Identities=15%  Similarity=0.207  Sum_probs=166.2

Q ss_pred             EEEcc--CCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEE
Q 015490          119 MAIHP--HGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVF  194 (406)
Q Consensus       119 ~~~sp--~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vw  194 (406)
                      ..|++  +.+++++.+  ++.+.+++......+      . ...+....+.|...|..+.|-|....|++++.|.++++|
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr------~-ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~W  127 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFR------L-EERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPW  127 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcc------h-hhhhhcccccccceeEeeccCCCceeEEEccCCceeeee
Confidence            55654  444555544  777777665433222      0 011223344566889999999966789999999999999


Q ss_pred             eCCCcceEee--eeccCCceeEEEEccCCC-EEEEEeCCCCEEEEEcCCCe--------------------eeeeccc--
Q 015490          195 KWPSLEIILN--ESEAHASVKDLSFSPDGK-FLVSLGNRGPGRVWDLASSA--------------------VATPLAK--  249 (406)
Q Consensus       195 d~~~~~~~~~--~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~iwd~~~~~--------------------~~~~~~~--  249 (406)
                      |+.+.++...  +.+|...|.+++|.|+.. .|++|+.||.|.|||++-..                    +...+..  
T Consensus       128 dvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~  207 (720)
T KOG0321|consen  128 DVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRI  207 (720)
T ss_pred             eeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccc
Confidence            9999888766  889999999999999655 78899999999999986432                    0000000  


Q ss_pred             ----CCcceEEE---EEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEe--------eec---CCCeEEEEEcCC
Q 015490          250 ----ENDELFAS---CRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTK--------QVV---REPVSSFNVSAD  311 (406)
Q Consensus       250 ----~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~--------~~~---~~~i~~~~~sp~  311 (406)
                          .+...+.+   +.+..|...     ++..+..|+.|++||++........        ..+   ...+.++.....
T Consensus       208 ~k~kA~s~ti~ssvTvv~fkDe~t-----laSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss  282 (720)
T KOG0321|consen  208 RKWKAASNTIFSSVTVVLFKDEST-----LASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS  282 (720)
T ss_pred             cccccccCceeeeeEEEEEeccce-----eeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC
Confidence                01112222   344455543     4444456999999999875433221        112   235678888888


Q ss_pred             CCEEEEEeCCCcEEEEECCCce--EEEEeeccccc-ce-EEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490          312 GKLLAVGTASGDISIIDSSSLQ--VRTAVKKAHLG-IV-TALAFSYDSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       312 ~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~-~v-~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      |.+|++.+.|+.|++||+.+..  ++..+. ++.. .. ..-..+||+.++++|+.|...++|.+.+.+.
T Consensus       283 Gt~L~AsCtD~sIy~ynm~s~s~sP~~~~s-g~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~  351 (720)
T KOG0321|consen  283 GTYLFASCTDNSIYFYNMRSLSISPVAEFS-GKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA  351 (720)
T ss_pred             CCeEEEEecCCcEEEEeccccCcCchhhcc-CcccceeeeeeecCCCCceEeccCCCcceeeeeecCccC
Confidence            9999999999999999998643  233332 2211 11 1234589999999999999999999998765

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.78  E-value=2.3e-19  Score=165.07  Aligned_cols=263  Identities=17%  Similarity=0.227  Sum_probs=196.4

Q ss_pred             cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCCE
Q 015490          104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTI  181 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~  181 (406)
                      +.+..+.+|...|+|+.|...|.++++|+ |.-++||..+              +..++....+| +.++.++.+.+..+
T Consensus       181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~e--------------t~~~lAs~rGhs~ditdlavs~~n~~  246 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSME--------------TARCLASCRGHSGDITDLAVSSNNTM  246 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeecc--------------chhhhccCCCCccccchhccchhhhh
Confidence            45667889999999999999999999998 7778887744              33444445555 88999999999999


Q ss_pred             EEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeee---ecccCCcceEEEE
Q 015490          182 FAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT---PLAKENDELFASC  258 (406)
Q Consensus       182 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~---~~~~~~~~~~~~~  258 (406)
                      +++++.|..|++|.+.++..+..+.+|.+.|++++|+|-.    +.+.||++++||.+-.-...   .+....+..+.++
T Consensus       247 iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~  322 (1113)
T KOG0644|consen  247 IAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSI  322 (1113)
T ss_pred             hhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeee
Confidence            9999999999999999999999999999999999999954    78899999999987111000   0000011111111


Q ss_pred             EEEcCCCC----------------------ceEEE---------EEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEE
Q 015490          259 RFSPLNNE----------------------DYVLY---------IAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFN  307 (406)
Q Consensus       259 ~~~~~~~~----------------------~~~l~---------~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~  307 (406)
                      .|...+..                      ..+.|         +..+...+..+.+|++.++...+.+.+|...+..+.
T Consensus       323 ~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd  402 (1113)
T KOG0644|consen  323 LFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLD  402 (1113)
T ss_pred             eccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeee
Confidence            11110000                      00111         122233456788999999999999999999999999


Q ss_pred             EcCCC-CEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCchHHH
Q 015490          308 VSADG-KLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLNLWI  385 (406)
Q Consensus       308 ~sp~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~  385 (406)
                      ++|-+ +...+++.||...|||+-.+.+++....+| +.+....||+||..++....-|.++|.....++.....++-+
T Consensus       403 ~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k~ak~dq  480 (1113)
T KOG0644|consen  403 VHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQKKAKYDQ  480 (1113)
T ss_pred             ecCCCcHhhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCCceEecCCCCCceEEeccCCCccccccccce
Confidence            99955 455578889999999999998888876554 567778999999999877777899999887777666555443

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.78  E-value=4e-16  Score=129.08  Aligned_cols=240  Identities=13%  Similarity=0.213  Sum_probs=169.8

Q ss_pred             ceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEE-EeeC------C
Q 015490          116 PYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFA-AGSE------N  188 (406)
Q Consensus       116 v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~~~------d  188 (406)
                      ..+++|+.|...++++.+...+||+.+.-.....+..           ....-.+..+-|  ..++|| +|+.      -
T Consensus         8 ~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~-----------~~~G~~~veMLf--R~N~laLVGGg~~pky~p   74 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQF-----------IDGGFKIVEMLF--RSNYLALVGGGSRPKYPP   74 (346)
T ss_pred             eeEEEEccCCceEEEEecCceEEEecCchhhhhhhcc-----------ccCchhhhhHhh--hhceEEEecCCCCCCCCC
Confidence            4569999999999999999999999886321111110           001111122222  223443 3332      2


Q ss_pred             CeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcC-CCeeeeecccCCcceEEEEEEEcCCCCc
Q 015490          189 GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLA-SSAVATPLAKENDELFASCRFSPLNNED  267 (406)
Q Consensus       189 g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (406)
                      ..|.|||=...+++..+ .-..+|.++.+.++  +|++.- ++.|+||... +.+.++.+..... +-.-++..|.... 
T Consensus        75 NkviIWDD~k~~~i~el-~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~N-PkGlC~~~~~~~k-  148 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIEL-SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSN-PKGLCSLCPTSNK-  148 (346)
T ss_pred             ceEEEEecccCcEEEEE-EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccC-CCceEeecCCCCc-
Confidence            57999995445555444 44568999999876  455554 5689999987 4455555443221 1114556665553 


Q ss_pred             eEEEEEEEcCCCcEEEEEeCCCceE--EEEeeecCCCeEEEEEcCCCCEEEEEeCCCc-EEEEECCCceEEEEeeccc-c
Q 015490          268 YVLYIAAITDRGASIVTWNTTTWKR--IRTKQVVREPVSSFNVSADGKLLAVGTASGD-ISIIDSSSLQVRTAVKKAH-L  343 (406)
Q Consensus       268 ~~l~~~~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~-~  343 (406)
                        .+++.-+..-|.|.+.|+...+.  ...+..|...|.|++.+-+|..+|+++..|+ |||||..++..+..+.++- .
T Consensus       149 --~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~  226 (346)
T KOG2111|consen  149 --SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDR  226 (346)
T ss_pred             --eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCch
Confidence              34566677789999999986554  4778899999999999999999999999998 7999999999999997653 3


Q ss_pred             cceEEEEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490          344 GIVTALAFSYDSRALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       344 ~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~  376 (406)
                      ..|.+++|||++.+|+++|..|+++|+.++...
T Consensus       227 A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  227 ADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             heEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence            569999999999999999999999999998744

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.77  E-value=1.2e-16  Score=136.21  Aligned_cols=254  Identities=17%  Similarity=0.240  Sum_probs=170.1

Q ss_pred             CCCCceEEEEccCCC-eEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCCEEEEeeCC
Q 015490          112 DSDLPYRMAIHPHGD-GIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIFAAGSEN  188 (406)
Q Consensus       112 h~~~v~~~~~sp~~~-~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~d  188 (406)
                      ...+|..+.|.++.. .+++++ |..++||.++......-.     ...+.+..+. |+..|+++.|+|+|.+||+|+.+
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~-----~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~   86 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD-----MKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDG   86 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc-----eeEEEeecccCCcceeEEEEEcCCcCeeeecCCC
Confidence            346789999999877 788876 999999998765433210     0122233343 45889999999999999999999


Q ss_pred             CeEEEEeCC--------C--------cceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCc
Q 015490          189 GNLRVFKWP--------S--------LEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKEND  252 (406)
Q Consensus       189 g~i~vwd~~--------~--------~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~  252 (406)
                      |.|.+|...        +        ......+.+|...|..++|+|++.++++++.|+.+++||+..|.....+..| .
T Consensus        87 g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh-~  165 (434)
T KOG1009|consen   87 GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDH-E  165 (434)
T ss_pred             ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccc-c
Confidence            999999865        2        1223445567779999999999999999999999999999999988877654 5


Q ss_pred             ceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEee-------------------ecC----CCeEEEEEc
Q 015490          253 ELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQ-------------------VVR----EPVSSFNVS  309 (406)
Q Consensus       253 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~-------------------~~~----~~i~~~~~s  309 (406)
                      ..+..++|.|.+++      +++-+.|...+.+.+...+.+....                   .|.    .-...++|+
T Consensus       166 ~yvqgvawDpl~qy------v~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfT  239 (434)
T KOG1009|consen  166 HYVQGVAWDPLNQY------VASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFT  239 (434)
T ss_pred             cccceeecchhhhh------hhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccC
Confidence            56788999998885      3333445545555444322211111                   011    124567899


Q ss_pred             CCCCEEEEEeC----CCc-----EEEEECCC-ceEEEEeecccccceEEEEEcC------------------CCCeEEEE
Q 015490          310 ADGKLLAVGTA----SGD-----ISIIDSSS-LQVRTAVKKAHLGIVTALAFSY------------------DSRALVSA  361 (406)
Q Consensus       310 p~~~~l~~~~~----dg~-----i~i~d~~~-~~~~~~~~~~~~~~v~~~~~sp------------------~~~~l~s~  361 (406)
                      |||.++++...    .+.     .++|+-.. .++...+. ....++..+.|+|                  -+-.++.+
T Consensus       240 PdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp-~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiA  318 (434)
T KOG1009|consen  240 PDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLP-SPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIA  318 (434)
T ss_pred             CCCcEEEcccceeeeCCceeeceeEeeccccccCceeecC-CCCcceEEEEeeeeEEEeccccccccccccccceEEEEe
Confidence            99999987543    232     35555443 23333332 3444455555554                  12234444


Q ss_pred             ECCCcEEEEEecCCcCCC
Q 015490          362 SMDSSVRVTVIEDKKKSG  379 (406)
Q Consensus       362 s~dg~i~iw~~~~~~~~~  379 (406)
                      + ...|+|||.++.+.+.
T Consensus       319 t-~~svyvydtq~~~P~~  335 (434)
T KOG1009|consen  319 T-KNSVYVYDTQTLEPLA  335 (434)
T ss_pred             e-cceEEEeccccccceE
Confidence            4 4579999999876643

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.77  E-value=6.5e-16  Score=143.39  Aligned_cols=238  Identities=14%  Similarity=0.124  Sum_probs=155.8

Q ss_pred             EEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeecccc
Q 015490           89 VLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLEN  166 (406)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (406)
                      ..++.+|.+..     ....+..+...+.+.+|+|||+.|+..+  .+...||.++..+++...          +..  .
T Consensus       179 ~~l~~~d~dg~-----~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~----------l~~--~  241 (429)
T PRK03629        179 YELRVSDYDGY-----NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ----------VAS--F  241 (429)
T ss_pred             eeEEEEcCCCC-----CCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE----------ccC--C
Confidence            35566665442     2344556778899999999999998764  344567777765443211          111  1


Q ss_pred             cCcEEEEEECCCCCEEEEe-eCCC--eEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCC-CC--EEEEEcCC
Q 015490          167 VGQQLALTFDSEGTIFAAG-SENG--NLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNR-GP--GRVWDLAS  240 (406)
Q Consensus       167 ~~~v~~~~~s~~g~~l~~~-~~dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d-~~--i~iwd~~~  240 (406)
                      .+.+..+.|||||+.|+.. +.+|  .|++||+++++.. .+..+...+....|+|||+.|+..+.+ +.  |+++|+.+
T Consensus       242 ~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~  320 (429)
T PRK03629        242 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING  320 (429)
T ss_pred             CCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCC
Confidence            2234468999999988765 4344  5999999887654 344444567889999999998877754 44  45557766


Q ss_pred             CeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC
Q 015490          241 SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA  320 (406)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~  320 (406)
                      ++... +... ........|+|+++.   ++++........|++||+.+++.. .+... .......|+|||++|+.++.
T Consensus       321 g~~~~-lt~~-~~~~~~~~~SpDG~~---Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~  393 (429)
T PRK03629        321 GAPQR-ITWE-GSQNQDADVSSDGKF---MVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSS  393 (429)
T ss_pred             CCeEE-eecC-CCCccCEEECCCCCE---EEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEc
Confidence            54432 2221 223456889999985   222222233457899999887643 33322 23457889999999999888


Q ss_pred             CCc---EEEEECCCceEEEEeecccccceEEEEEcC
Q 015490          321 SGD---ISIIDSSSLQVRTAVKKAHLGIVTALAFSY  353 (406)
Q Consensus       321 dg~---i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp  353 (406)
                      ++.   +.++++. +.....+. .|.+.+...+|+|
T Consensus       394 ~~~~~~l~~~~~~-G~~~~~l~-~~~~~~~~p~Wsp  427 (429)
T PRK03629        394 QGMGSVLNLVSTD-GRFKARLP-ATDGQVKFPAWSP  427 (429)
T ss_pred             CCCceEEEEEECC-CCCeEECc-cCCCCcCCcccCC
Confidence            764   6777874 55555664 6888899999987

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.76  E-value=2.9e-18  Score=148.22  Aligned_cols=247  Identities=16%  Similarity=0.216  Sum_probs=196.2

Q ss_pred             EecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeC
Q 015490          109 LRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE  187 (406)
Q Consensus       109 ~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  187 (406)
                      +.-.....+.+.++.+|++++.++ -|.+..++|..              ......+.....|.++.|-.+.+++|++- 
T Consensus       125 L~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t--------------~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQ-  189 (545)
T KOG1272|consen  125 LSLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVT--------------KKLHFEINVMETVRDVTFLHNEQFFAVAQ-  189 (545)
T ss_pred             ccccccCCeeeeecCCccEEEecCCccceeeeeccc--------------ceeeeeeehhhhhhhhhhhcchHHHHhhh-
Confidence            333355678999999999999998 78888888873              33444445557788999999988888864 


Q ss_pred             CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCc
Q 015490          188 NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNED  267 (406)
Q Consensus       188 dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (406)
                      ...++||| ..|..+..+..+ ..|..+.|.|.--+|++++..|.++.-|+.+|+.+..+....+ .+..+.-+|.+.  
T Consensus       190 K~y~yvYD-~~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G-~~~vm~qNP~Na--  264 (545)
T KOG1272|consen  190 KKYVYVYD-NNGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAG-RTDVMKQNPYNA--  264 (545)
T ss_pred             hceEEEec-CCCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCC-ccchhhcCCccc--
Confidence            56899999 667777776554 4689999999988899999999999999999999988876543 456677777765  


Q ss_pred             eEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceE
Q 015490          268 YVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVT  347 (406)
Q Consensus       268 ~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~  347 (406)
                          ++..|..+|+|.+|...+.+++..+.+|.++|.++++.++|+|+++.+.|..++|||+++...+.++..  .-+..
T Consensus       265 ----Vih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t--p~~a~  338 (545)
T KOG1272|consen  265 ----VIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT--PHPAS  338 (545)
T ss_pred             ----eEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec--CCCcc
Confidence                677889999999999999999999999999999999999999999999999999999999887777652  34567


Q ss_pred             EEEEcCCCCeEEEEECCCcEEEEE-ecCCcCCCCchH
Q 015490          348 ALAFSYDSRALVSASMDSSVRVTV-IEDKKKSGGLNL  383 (406)
Q Consensus       348 ~~~~sp~~~~l~s~s~dg~i~iw~-~~~~~~~~~~~~  383 (406)
                      .+++|..|  +++++....|.||. .-.+..-...|+
T Consensus       339 ~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pY  373 (545)
T KOG1272|consen  339 NLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPY  373 (545)
T ss_pred             cccccccc--ceeeecCCeeeeehhhhcCCCCCCcch
Confidence            88888655  44455666799994 434333344454

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.76  E-value=6.9e-16  Score=143.03  Aligned_cols=280  Identities=11%  Similarity=0.112  Sum_probs=188.5

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeeccccc
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV  167 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (406)
                      .++.|+.... .  .+...+ .-...|+|+.|+|....+++|+  +|.+.+|+.  ..+.....     ..-......|.
T Consensus       223 ~~~vW~~~~p-~--~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~--~~~~~~~~-----s~ls~~~~sh~  291 (555)
T KOG1587|consen  223 VLLVWSLKNP-N--TPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDL--RKGSDTPP-----SGLSALEVSHS  291 (555)
T ss_pred             eEEEEecCCC-C--CceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEc--cCCCCCCC-----cccccccccCC
Confidence            4566666553 1  233333 3467899999999988888877  555555544  43332110     22223344566


Q ss_pred             CcEEEEEECCCC--CEEEEeeCCCeEEEEeCCCcceEe-----eeec-------cCCceeEEEEcc-CCCEEEEEeCCCC
Q 015490          168 GQQLALTFDSEG--TIFAAGSENGNLRVFKWPSLEIIL-----NESE-------AHASVKDLSFSP-DGKFLVSLGNRGP  232 (406)
Q Consensus       168 ~~v~~~~~s~~g--~~l~~~~~dg~i~vwd~~~~~~~~-----~~~~-------~~~~i~~~~~s~-~~~~l~s~s~d~~  232 (406)
                      .+++.+.|..+.  .-|++++.||.|..|+++.-....     ....       ....+++++|.+ +-..+++|+.+|.
T Consensus       292 ~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~  371 (555)
T KOG1587|consen  292 EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGK  371 (555)
T ss_pred             cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcE
Confidence            889999997754  448999999999999986433211     1111       112788999987 4457889999998


Q ss_pred             EEEEEcCCCeeee-------ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC-CceEEEEeeecCCCeE
Q 015490          233 GRVWDLASSAVAT-------PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT-TWKRIRTKQVVREPVS  304 (406)
Q Consensus       233 i~iwd~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~i~  304 (406)
                      |.--+-...+...       .....+...++++.++|-+..    +++++ + |-++++|... ...++..+..+...++
T Consensus       372 v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k----~fls~-g-DW~vriWs~~~~~~Pl~~~~~~~~~v~  445 (555)
T KOG1587|consen  372 VYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPK----NFLSV-G-DWTVRIWSEDVIASPLLSLDSSPDYVT  445 (555)
T ss_pred             EEEEeccCCcccccccccccccccccCcceEeeecCCCccc----eeeee-c-cceeEeccccCCCCcchhhhhccceee
Confidence            8774332222111       111234567899999999886    23333 3 8999999987 6677777777777799


Q ss_pred             EEEEcCCC-CEEEEEeCCCcEEEEECCC--ceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490          305 SFNVSADG-KLLAVGTASGDISIIDSSS--LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       305 ~~~~sp~~-~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~  381 (406)
                      +++|||.. ..++++..||.+.+||+..  ..++.... .+....+.+.|+++|+.|+.|...|++++|++...-.....
T Consensus       446 ~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~-~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~l~~~~~  524 (555)
T KOG1587|consen  446 DVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQK-VCSPALTRVRWSPNGKLLAVGDANGTTHILKLSESLAVPSP  524 (555)
T ss_pred             eeEEcCcCceEEEEEcCCCceehhhhhccccCCccccc-ccccccceeecCCCCcEEEEecCCCcEEEEEcCchhhccCc
Confidence            99999965 5677788899999999964  34444443 34566778899999999999999999999999765444444


Q ss_pred             hHHHHH
Q 015490          382 NLWIII  387 (406)
Q Consensus       382 ~~~~~~  387 (406)
                      +-|..+
T Consensus       525 ~e~~~~  530 (555)
T KOG1587|consen  525 NEKALF  530 (555)
T ss_pred             chHHHH
Confidence            444433

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.76  E-value=2.4e-14  Score=133.45  Aligned_cols=252  Identities=25%  Similarity=0.416  Sum_probs=186.5

Q ss_pred             ceeEEecCC-CCceEEEE-ccCCC-eEEEEe--cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCC
Q 015490          105 PVAELRTDS-DLPYRMAI-HPHGD-GIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEG  179 (406)
Q Consensus       105 ~~~~~~~h~-~~v~~~~~-sp~~~-~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  179 (406)
                      ....+.++. ..+..+.+ ++++. .++..+  ++.+.+|+.... .           ........+...+..+.|+|++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~-----------~~~~~~~~~~~~v~~~~~~~~~  167 (466)
T COG2319         100 LIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTP-G-----------KLIRTLEGHSESVTSLAFSPDG  167 (466)
T ss_pred             eEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCC-C-----------eEEEEEecCcccEEEEEECCCC
Confidence            455555544 37777777 88887 334322  666777666530 1           1111122355788899999999


Q ss_pred             CEEEEeeC-CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCC-EEEEEeCCCCEEEEEcCCCeeee-ecccCCcceEE
Q 015490          180 TIFAAGSE-NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGK-FLVSLGNRGPGRVWDLASSAVAT-PLAKENDELFA  256 (406)
Q Consensus       180 ~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~iwd~~~~~~~~-~~~~~~~~~~~  256 (406)
                      ..+++++. |+.+++|++..+.....+..|...|.+++|+|++. .+++++.|+.+++||...+.... .+..+....  
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~--  245 (466)
T COG2319         168 KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV--  245 (466)
T ss_pred             CEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce--
Confidence            98888885 99999999998888888888888999999999998 55555899999999998777777 455544432  


Q ss_pred             EEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceE-EEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEE
Q 015490          257 SCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKR-IRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVR  335 (406)
Q Consensus       257 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~  335 (406)
                      ...|++++.      .++.++.++.+++||.+.... ...+..|...+.++.|+|++..+++++.|+.+.+||..+....
T Consensus       246 ~~~~~~~~~------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  319 (466)
T COG2319         246 VSSFSPDGS------LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLL  319 (466)
T ss_pred             eEeECCCCC------EEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceE
Confidence            227999884      234778899999999987664 4444567789999999998888888888988999999887766


Q ss_pred             EEee-cccccceEEEEEcCCCCeEEEE-ECCCcEEEEEecCCc
Q 015490          336 TAVK-KAHLGIVTALAFSYDSRALVSA-SMDSSVRVTVIEDKK  376 (406)
Q Consensus       336 ~~~~-~~~~~~v~~~~~sp~~~~l~s~-s~dg~i~iw~~~~~~  376 (406)
                      .... ..|...+..+.|.+++..++.+ ..|+.+.+|++....
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         320 SSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             EEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence            5553 3677789999994332455555 688999999998876

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=8.9e-16  Score=142.88  Aligned_cols=250  Identities=14%  Similarity=0.137  Sum_probs=165.6

Q ss_pred             EecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeC
Q 015490          109 LRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE  187 (406)
Q Consensus       109 ~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  187 (406)
                      -..|+..++|.++||++++++++. +|.+.+|  ........       ...+....-|+..|.+++|+++|.+|++|+.
T Consensus       201 ~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw--~d~~~~~~-------~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~  271 (792)
T KOG1963|consen  201 TVHHTFNITCVALSPNERYLAAGDSDGRILVW--RDFGSSDD-------SETCTLLHWHHDEVNSLSFSSDGAYLLSGGR  271 (792)
T ss_pred             hhhhcccceeEEeccccceEEEeccCCcEEEE--eccccccc-------cccceEEEecccccceeEEecCCceEeeccc
Confidence            345777799999999999999885 6655554  43221000       1122222336689999999999999999999


Q ss_pred             CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeeccc----------CCcceEEE
Q 015490          188 NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAK----------ENDELFAS  257 (406)
Q Consensus       188 dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~----------~~~~~~~~  257 (406)
                      .|.+.+|.+.+++ ..-++.-.+.|..+.+|||+.+.+....|+.|.+-...+......+.+          ......+.
T Consensus       272 E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~  350 (792)
T KOG1963|consen  272 EGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTG  350 (792)
T ss_pred             ceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccccccccee
Confidence            9999999999988 445556666999999999999999999999999988755443333221          11233445


Q ss_pred             EEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEe-----------------------------------------
Q 015490          258 CRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTK-----------------------------------------  296 (406)
Q Consensus       258 ~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~-----------------------------------------  296 (406)
                      ++++|..+      .++..+..+.|.+||+.+.+.+..+                                         
T Consensus       351 ~~idpr~~------~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~  424 (792)
T KOG1963|consen  351 VSIDPRTN------SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFN  424 (792)
T ss_pred             EEEcCCCC------ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhh
Confidence            66666333      2233345555555555432222111                                         


Q ss_pred             ---------------------------eecCCCeEEEEEcC-C-CCEEEEEeCCCcEEEEECCCce---------EEEEe
Q 015490          297 ---------------------------QVVREPVSSFNVSA-D-GKLLAVGTASGDISIIDSSSLQ---------VRTAV  338 (406)
Q Consensus       297 ---------------------------~~~~~~i~~~~~sp-~-~~~l~~~~~dg~i~i~d~~~~~---------~~~~~  338 (406)
                                                 ..|+..+...++.+ . ....++++.||.++||-+...+         ....+
T Consensus       425 ~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i  504 (792)
T KOG1963|consen  425 FFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAI  504 (792)
T ss_pred             ccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeee
Confidence                                       11222333333332 2 2268888999999999883221         11112


Q ss_pred             ecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCC
Q 015490          339 KKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDK  375 (406)
Q Consensus       339 ~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~  375 (406)
                      ...|..++++++|+.||. +++++.|++|.+||..+.
T Consensus       505 ~sy~k~~i~a~~fs~dGs-lla~s~~~~Itiwd~~~~  540 (792)
T KOG1963|consen  505 GSYHKTPITALCFSQDGS-LLAVSFDDTITIWDYDTK  540 (792)
T ss_pred             eccccCcccchhhcCCCc-EEEEecCCEEEEecCCCh
Confidence            124788999999999996 555678999999999883

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.76  E-value=2.7e-15  Score=135.23  Aligned_cols=269  Identities=16%  Similarity=0.165  Sum_probs=166.1

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccC
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVG  168 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (406)
                      .+..+|..+    .+.+.++......-..+.|+|||+++++++ ++.+.  .+|..+.+            .+.++....
T Consensus        17 ~v~viD~~t----~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vs--viD~~~~~------------~v~~i~~G~   78 (369)
T PF02239_consen   17 SVAVIDGAT----NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVS--VIDLATGK------------VVATIKVGG   78 (369)
T ss_dssp             EEEEEETTT-----SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEE--EEETTSSS------------EEEEEE-SS
T ss_pred             EEEEEECCC----CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEE--EEECCccc------------EEEEEecCC
Confidence            566667665    346777776555445578999999998887 65544  46655443            444444556


Q ss_pred             cEEEEEECCCCCEEEEee-CCCeEEEEeCCCcceEeeeecc-------CCceeEEEEccCCCEEEEEe-CCCCEEEEEcC
Q 015490          169 QQLALTFDSEGTIFAAGS-ENGNLRVFKWPSLEIILNESEA-------HASVKDLSFSPDGKFLVSLG-NRGPGRVWDLA  239 (406)
Q Consensus       169 ~v~~~~~s~~g~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~s~s-~d~~i~iwd~~  239 (406)
                      ...++++|+||+++++++ ..+.+.++|.++.+.+..+...       ...+..+.-+|....++..- +.+.|.+.|..
T Consensus        79 ~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~  158 (369)
T PF02239_consen   79 NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYS  158 (369)
T ss_dssp             EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETT
T ss_pred             CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEec
Confidence            678899999999998775 5899999999999988776543       23577888888888555554 45788888877


Q ss_pred             CCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEE-------------------------
Q 015490          240 SSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIR-------------------------  294 (406)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~-------------------------  294 (406)
                      ..+....-............|+|++++     +++.......|.++|..+++.+.                         
T Consensus       159 d~~~~~~~~i~~g~~~~D~~~dpdgry-----~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw  233 (369)
T PF02239_consen  159 DPKNLKVTTIKVGRFPHDGGFDPDGRY-----FLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVW  233 (369)
T ss_dssp             TSSCEEEEEEE--TTEEEEEE-TTSSE-----EEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEE
T ss_pred             cccccceeeecccccccccccCcccce-----eeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEE
Confidence            654433222223344567889999885     22333334466666666554433                         


Q ss_pred             ------------------------------EeeecCCCeEEEEEcCCCCEEEEE----eCCCcEEEEECCCceEEEEeec
Q 015490          295 ------------------------------TKQVVREPVSSFNVSADGKLLAVG----TASGDISIIDSSSLQVRTAVKK  340 (406)
Q Consensus       295 ------------------------------~~~~~~~~i~~~~~sp~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~  340 (406)
                                                    ++.....+ .-+.-+|+++++.+.    ...++|.++|.++.+....+..
T Consensus       234 ~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~  312 (369)
T PF02239_consen  234 ATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITP  312 (369)
T ss_dssp             EEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHH
T ss_pred             eeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEec
Confidence                                          22222223 456679999999998    3357899999999988887753


Q ss_pred             ccccceEEEEEcCCCCeEEEEECC--CcEEEEEecCCcCCCCch
Q 015490          341 AHLGIVTALAFSYDSRALVSASMD--SSVRVTVIEDKKKSGGLN  382 (406)
Q Consensus       341 ~~~~~v~~~~~sp~~~~l~s~s~d--g~i~iw~~~~~~~~~~~~  382 (406)
                      +....+..+.|++||+.+..+..+  +.|.+||..+.+.+..++
T Consensus       313 ~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  313 GPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             HHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             cCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence            333458999999999987655443  369999999999887776

...

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=5.6e-17  Score=135.21  Aligned_cols=195  Identities=17%  Similarity=0.289  Sum_probs=151.1

Q ss_pred             CEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEcc--CCCEEEEEeCCCCEEEEEcCCCeeeeeccc--CCcceE
Q 015490          180 TIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSP--DGKFLVSLGNRGPGRVWDLASSAVATPLAK--ENDELF  255 (406)
Q Consensus       180 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~--~~~~~~  255 (406)
                      ..+|++..+|.|++||..+++.+..+.++...++.+.|..  ....+.+++.||+|++||+++......+..  +...+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            5688888999999999999999999999988899999976  456799999999999999998776655443  333355


Q ss_pred             EEEEEEcCCCCceEEEEEEEc----CCCcEEEEEeCCCceE-EEEe-eecCCCeEEEEEcC-CCCEEEEEeCCCcEEEEE
Q 015490          256 ASCRFSPLNNEDYVLYIAAIT----DRGASIVTWNTTTWKR-IRTK-QVVREPVSSFNVSA-DGKLLAVGTASGDISIID  328 (406)
Q Consensus       256 ~~~~~~~~~~~~~~l~~~~~~----~~~~~i~~~d~~~~~~-~~~~-~~~~~~i~~~~~sp-~~~~l~~~~~dg~i~i~d  328 (406)
                      .+++....++      +.+.+    ..+..|.+||.|..+. +..+ ..|...|++++|+| +.+.|++|+.||-|.+||
T Consensus       121 ~~ld~nck~~------ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD  194 (376)
T KOG1188|consen  121 ICLDLNCKKN------IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFD  194 (376)
T ss_pred             eEeeccCcCC------eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeee
Confidence            5555554444      23332    3467899999998776 4443 46788999999999 568999999999999999


Q ss_pred             CCCceE----EEEeecccccceEEEEEcCCC-CeEEEEECCCcEEEEEecCCcCCCCch
Q 015490          329 SSSLQV----RTAVKKAHLGIVTALAFSYDS-RALVSASMDSSVRVTVIEDKKKSGGLN  382 (406)
Q Consensus       329 ~~~~~~----~~~~~~~~~~~v~~~~~sp~~-~~l~s~s~dg~i~iw~~~~~~~~~~~~  382 (406)
                      +.....    +..+  .|...|..+.|..++ +.+.+-+...+..+|+++.+.....++
T Consensus       195 ~~~d~EeDaL~~vi--N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~  251 (376)
T KOG1188|consen  195 TKKDNEEDALLHVI--NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE  251 (376)
T ss_pred             cCCCcchhhHHHhh--cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence            975432    2333  467789999999887 347777889999999999988655544

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.75  E-value=1.9e-15  Score=136.34  Aligned_cols=225  Identities=10%  Similarity=0.084  Sum_probs=149.5

Q ss_pred             ecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEee-CCCeEEEEeCC-Ccce--Eeeeec
Q 015490          132 LQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGS-ENGNLRVFKWP-SLEI--ILNESE  207 (406)
Q Consensus       132 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~dg~i~vwd~~-~~~~--~~~~~~  207 (406)
                      .++.+.+|+++.. +.          ...++.+...+....++++|++++|++++ .++.|.+|+++ ++..  .... .
T Consensus        10 ~~~~I~~~~~~~~-g~----------l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~   77 (330)
T PRK11028         10 ESQQIHVWNLNHE-GA----------LTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-P   77 (330)
T ss_pred             CCCCEEEEEECCC-Cc----------eeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-c
Confidence            3888888887531 11          11223333445667889999999887764 47889999986 3332  1111 1


Q ss_pred             cCCceeEEEEccCCCEEEEEeC-CCCEEEEEcCCCe----eeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEE
Q 015490          208 AHASVKDLSFSPDGKFLVSLGN-RGPGRVWDLASSA----VATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASI  282 (406)
Q Consensus       208 ~~~~i~~~~~s~~~~~l~s~s~-d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i  282 (406)
                      .......++++|+++++++++. ++.|.+|++.+..    ....+.  .......++++|+++.     +.++...++.|
T Consensus        78 ~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~--~~~~~~~~~~~p~g~~-----l~v~~~~~~~v  150 (330)
T PRK11028         78 LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE--GLEGCHSANIDPDNRT-----LWVPCLKEDRI  150 (330)
T ss_pred             CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc--CCCcccEeEeCCCCCE-----EEEeeCCCCEE
Confidence            2235678999999998888774 7899999996422    222222  1223567889999985     45566778999


Q ss_pred             EEEeCCCceEEEE-----ee-ecCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCC--c--eEEEEeec-----ccccce
Q 015490          283 VTWNTTTWKRIRT-----KQ-VVREPVSSFNVSADGKLLAVGTA-SGDISIIDSSS--L--QVRTAVKK-----AHLGIV  346 (406)
Q Consensus       283 ~~~d~~~~~~~~~-----~~-~~~~~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~~--~--~~~~~~~~-----~~~~~v  346 (406)
                      .+||+.+...+..     .. ........+.|+|+|+++++++. ++.|.+|+++.  +  +.+..+..     .+....
T Consensus       151 ~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  230 (330)
T PRK11028        151 RLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWA  230 (330)
T ss_pred             EEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccc
Confidence            9999976332211     11 11234578999999999988877 89999999973  2  22333321     011223


Q ss_pred             EEEEEcCCCCeEEEEE-CCCcEEEEEecCC
Q 015490          347 TALAFSYDSRALVSAS-MDSSVRVTVIEDK  375 (406)
Q Consensus       347 ~~~~~sp~~~~l~s~s-~dg~i~iw~~~~~  375 (406)
                      ..+.++|++++|+++. .++.|.+|++++.
T Consensus       231 ~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~  260 (330)
T PRK11028        231 ADIHITPDGRHLYACDRTASLISVFSVSED  260 (330)
T ss_pred             eeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence            4688999999998875 4789999999654

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=9.4e-16  Score=122.27  Aligned_cols=239  Identities=13%  Similarity=0.184  Sum_probs=171.5

Q ss_pred             CCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeec-ccccCcEEEEEECCCCCEEEEeeCCCeE
Q 015490          114 DLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQ-LENVGQQLALTFDSEGTIFAAGSENGNL  191 (406)
Q Consensus       114 ~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~dg~i  191 (406)
                      ..|.+-+|+|.+++|+++. ++++.++.+........    .++....+.. ..|.++++.++|..  .+|++|+ ||.|
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa----~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V   83 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA----EPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLV   83 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc----CCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceE
Confidence            3466778999999999997 88888877654322211    1113333334 34558999999983  4566665 5999


Q ss_pred             EEEeCCCcce------Ee--eeecc-----CCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEE
Q 015490          192 RVFKWPSLEI------IL--NESEA-----HASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASC  258 (406)
Q Consensus       192 ~vwd~~~~~~------~~--~~~~~-----~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  258 (406)
                      +-|..+....      ..  ..+.+     -..|+++-..|..+.++.++.|+.++-||+++|+..+.+.+|.+ .+.++
T Consensus        84 ~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtD-YvH~v  162 (325)
T KOG0649|consen   84 YGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTD-YVHSV  162 (325)
T ss_pred             EEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcc-eeeee
Confidence            9998754322      00  11111     12789999999888888888999999999999999999997654 57777


Q ss_pred             EEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC----------CCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 015490          259 RFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR----------EPVSSFNVSADGKLLAVGTASGDISIID  328 (406)
Q Consensus       259 ~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~----------~~i~~~~~sp~~~~l~~~~~dg~i~i~d  328 (406)
                      .-......      +.++++||++++||.++++.+..+...+          ..|.+++-  +..++++|+ ...+.+|.
T Consensus       163 v~R~~~~q------ilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwh  233 (325)
T KOG0649|consen  163 VGRNANGQ------ILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWH  233 (325)
T ss_pred             eecccCcc------eeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEe
Confidence            66333332      5788999999999999999988775432          23455554  466888776 45699999


Q ss_pred             CCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490          329 SSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       329 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~  373 (406)
                      ++..++...+.  -.+++..+.|..|  .+++++..+.|.-|.+.
T Consensus       234 Lrsse~t~vfp--ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  234 LRSSESTCVFP--IPARVHLVDFVDD--CVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             ccCCCceEEEe--cccceeEeeeecc--eEEEeccccceeeeeec
Confidence            99999888885  6677888888754  67777777788888874

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=4.1e-16  Score=145.06  Aligned_cols=192  Identities=17%  Similarity=0.130  Sum_probs=131.7

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCC---CeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEe-CCCCEEEE--EcC
Q 015490          166 NVGQQLALTFDSEGTIFAAGSEN---GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLG-NRGPGRVW--DLA  239 (406)
Q Consensus       166 ~~~~v~~~~~s~~g~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s-~d~~i~iw--d~~  239 (406)
                      +...+...+|||||+.|+..+.+   ..|++||+.+++... +.........++|+|||+.|++++ .+|.+.||  |+.
T Consensus       202 ~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~  280 (429)
T PRK01742        202 SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGAN  280 (429)
T ss_pred             CCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECC
Confidence            44678999999999999887653   479999998876432 222222345789999999888765 67766555  665


Q ss_pred             CCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC--CceEEEEeeecCCCeEEEEEcCCCCEEEE
Q 015490          240 SSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT--TWKRIRTKQVVREPVSSFNVSADGKLLAV  317 (406)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~--~~~~~~~~~~~~~~i~~~~~sp~~~~l~~  317 (406)
                      +++. ..+.. +...+....|+|+++.     ++.+.+.++...+|+++  .+.. ..+ .+..  ....|+|||++|++
T Consensus       281 ~~~~-~~lt~-~~~~~~~~~wSpDG~~-----i~f~s~~~g~~~I~~~~~~~~~~-~~l-~~~~--~~~~~SpDG~~ia~  349 (429)
T PRK01742        281 GGTP-SQLTS-GAGNNTEPSWSPDGQS-----ILFTSDRSGSPQVYRMSASGGGA-SLV-GGRG--YSAQISADGKTLVM  349 (429)
T ss_pred             CCCe-Eeecc-CCCCcCCEEECCCCCE-----EEEEECCCCCceEEEEECCCCCe-EEe-cCCC--CCccCCCCCCEEEE
Confidence            5554 33433 2334668999999985     33344455666666553  3322 222 2332  46789999999998


Q ss_pred             EeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490          318 GTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       318 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~  373 (406)
                      .+.++ +.+||+.+++...... .+  ...++.|+|||++|+.++.++.+.+|.+.
T Consensus       350 ~~~~~-i~~~Dl~~g~~~~lt~-~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~  401 (429)
T PRK01742        350 INGDN-VVKQDLTSGSTEVLSS-TF--LDESPSISPNGIMIIYSSTQGLGKVLQLV  401 (429)
T ss_pred             EcCCC-EEEEECCCCCeEEecC-CC--CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence            87755 6669998887553322 22  23568899999999999999999988864

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.74  E-value=3.2e-16  Score=129.72  Aligned_cols=229  Identities=11%  Similarity=0.041  Sum_probs=172.2

Q ss_pred             EEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCCEEEEe
Q 015490          108 ELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIFAAG  185 (406)
Q Consensus       108 ~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~  185 (406)
                      .+..-..+|+|.+|++|+..++++. ...+.||.+...+           .-+...++. |...|++++|+|..+.|+++
T Consensus         5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~-----------~w~~~htls~Hd~~vtgvdWap~snrIvtc   73 (361)
T KOG1523|consen    5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD-----------LWEPAHTLSEHDKIVTGVDWAPKSNRIVTC   73 (361)
T ss_pred             EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCC-----------CceeceehhhhCcceeEEeecCCCCceeEc
Confidence            3444567899999999999999987 6688898887653           122333343 44789999999999999999


Q ss_pred             eCCCeEEEEeCCC-c--ceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCee---eeecccCCcceEEEEE
Q 015490          186 SENGNLRVFKWPS-L--EIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAV---ATPLAKENDELFASCR  259 (406)
Q Consensus       186 ~~dg~i~vwd~~~-~--~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~  259 (406)
                      +.|..-+||.... +  +....+..++...+++.|+|.++.|++++....|.||-++...-   .+.+..+....|.++.
T Consensus        74 s~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sld  153 (361)
T KOG1523|consen   74 SHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLD  153 (361)
T ss_pred             cCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeee
Confidence            9999999999833 3  34556677888999999999999999999999999998865432   2234445566789999


Q ss_pred             EEcCCCCceEEEEEEEcCCCcEEEEEeCCC------------------ceEEEEeeecCCCeEEEEEcCCCCEEEEEeCC
Q 015490          260 FSPLNNEDYVLYIAAITDRGASIVTWNTTT------------------WKRIRTKQVVREPVSSFNVSADGKLLAVGTAS  321 (406)
Q Consensus       260 ~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~------------------~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d  321 (406)
                      |+|++-      +++.++.|+..+++..--                  ++.+.++....+.+..+.|+|+|..|+-.+.|
T Consensus       154 WhpnnV------LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hd  227 (361)
T KOG1523|consen  154 WHPNNV------LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHD  227 (361)
T ss_pred             ccCCcc------eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCC
Confidence            999985      577888899988885421                  22233343445789999999999999999999


Q ss_pred             CcEEEEECCCce-EEEEeecccccceEEEEEcCC
Q 015490          322 GDISIIDSSSLQ-VRTAVKKAHLGIVTALAFSYD  354 (406)
Q Consensus       322 g~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~sp~  354 (406)
                      ..+.+-|..... .+......+ .+..++.|-.+
T Consensus       228 s~v~~~da~~p~~~v~~~~~~~-lP~ls~~~ise  260 (361)
T KOG1523|consen  228 STVSFVDAAGPSERVQSVATAQ-LPLLSVSWISE  260 (361)
T ss_pred             CceEEeecCCCchhccchhhcc-CCceeeEeecC
Confidence            999999987664 333333223 66777777544

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.74  E-value=1.5e-16  Score=143.52  Aligned_cols=230  Identities=15%  Similarity=0.195  Sum_probs=169.9

Q ss_pred             CceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCCEEEEeeCCCeEEE
Q 015490          115 LPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIFAAGSENGNLRV  193 (406)
Q Consensus       115 ~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~dg~i~v  193 (406)
                      .|..++|.|||..|+.+.++.+.+  +|.++            +..++++.+| +.|.|++|+.||+.+|+|+.|..|.+
T Consensus        14 ci~d~afkPDGsqL~lAAg~rlli--yD~nd------------G~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~   79 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGSRLLV--YDTSD------------GTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVII   79 (1081)
T ss_pred             chheeEECCCCceEEEecCCEEEE--EeCCC------------cccccccccccceEEEEEEccCCceeccCCCceeEEE
Confidence            789999999999999887776555  45543            3445555555 78999999999999999999999999


Q ss_pred             EeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEE
Q 015490          194 FKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIA  273 (406)
Q Consensus       194 wd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  273 (406)
                      |.-.-...+ . ..|.+.|.|+.|+|-...|++++-. ..-+|........   +......+.+++|..+|.+      +
T Consensus        80 W~~klEG~L-k-YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~---K~kss~R~~~CsWtnDGqy------l  147 (1081)
T KOG1538|consen   80 WTSKLEGIL-K-YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVS---KHKSSSRIICCSWTNDGQY------L  147 (1081)
T ss_pred             eccccccee-e-eccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHH---hhhhheeEEEeeecCCCcE------E
Confidence            985433222 2 3567799999999999999998854 4667876543222   1223456889999999984      5


Q ss_pred             EEcCCCcEEEEEeCCCceEEEE--eeecCCCeEEEEEcCCC-----CEEEEEeCCCcEEEEECCCceEEEEeecccccce
Q 015490          274 AITDRGASIVTWNTTTWKRIRT--KQVVREPVSSFNVSADG-----KLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIV  346 (406)
Q Consensus       274 ~~~~~~~~i~~~d~~~~~~~~~--~~~~~~~i~~~~~sp~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v  346 (406)
                      +.|-.+|+|.+-+-........  .-+...+|.+++|+|..     ..+++.....++.+|.+. |+.+..-. ...-..
T Consensus       148 alG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r-~L~FdP  225 (1081)
T KOG1538|consen  148 ALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDR-ALNFDP  225 (1081)
T ss_pred             EEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccc-cCCCCc
Confidence            5667799998876543332222  22356789999999953     478888888888888886 45444322 344556


Q ss_pred             EEEEEcCCCCeEEEEECCCcEEEEEe
Q 015490          347 TALAFSYDSRALVSASMDSSVRVTVI  372 (406)
Q Consensus       347 ~~~~~sp~~~~l~s~s~dg~i~iw~~  372 (406)
                      .|+.+.++|.+++.|+.|+.+++|.-
T Consensus       226 ~CisYf~NGEy~LiGGsdk~L~~fTR  251 (1081)
T KOG1538|consen  226 CCISYFTNGEYILLGGSDKQLSLFTR  251 (1081)
T ss_pred             hhheeccCCcEEEEccCCCceEEEee
Confidence            78999999999999999999988864

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.73  E-value=8.3e-16  Score=126.10  Aligned_cols=159  Identities=18%  Similarity=0.278  Sum_probs=118.5

Q ss_pred             eEEEEccCCCEEEEEeC----------CCCEEEEEcCC-CeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcE
Q 015490          213 KDLSFSPDGKFLVSLGN----------RGPGRVWDLAS-SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGAS  281 (406)
Q Consensus       213 ~~~~~s~~~~~l~s~s~----------d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  281 (406)
                      ..+.|+++|.+|+.-..          -+...+|.++. +.....+.......|..++|+|+++.    ++++.+..+..
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~----favi~g~~~~~   84 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNE----FAVIYGSMPAK   84 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCE----EEEEEccCCcc
Confidence            45889999997775433          23455665532 23444454444556999999999986    45556667789


Q ss_pred             EEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeE
Q 015490          282 IVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA---SGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRAL  358 (406)
Q Consensus       282 i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  358 (406)
                      |.+||++ .+.+..+.  ...+..+.|+|+|++|++++.   .|.|.+||.++.+.+....  |. .++.++|+|||++|
T Consensus        85 v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~-~~t~~~WsPdGr~~  158 (194)
T PF08662_consen   85 VTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HS-DATDVEWSPDGRYL  158 (194)
T ss_pred             cEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--cC-cEEEEEEcCCCCEE
Confidence            9999997 45555553  466789999999999999875   4679999999988887764  44 47899999999999


Q ss_pred             EEEEC------CCcEEEEEecCCcCCCCch
Q 015490          359 VSASM------DSSVRVTVIEDKKKSGGLN  382 (406)
Q Consensus       359 ~s~s~------dg~i~iw~~~~~~~~~~~~  382 (406)
                      ++++.      |+.++||++ +|+.+.+.+
T Consensus       159 ~ta~t~~r~~~dng~~Iw~~-~G~~l~~~~  187 (194)
T PF08662_consen  159 ATATTSPRLRVDNGFKIWSF-QGRLLYKKP  187 (194)
T ss_pred             EEEEeccceeccccEEEEEe-cCeEeEecc
Confidence            98863      788999999 466665544

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.72  E-value=3.1e-16  Score=138.18  Aligned_cols=182  Identities=14%  Similarity=0.176  Sum_probs=143.5

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeee
Q 015490          166 NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT  245 (406)
Q Consensus       166 ~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~  245 (406)
                      |.+.+.|-.|+|||.-|+++++||.|++|. ++|-....+.....+|+|++|.|+.+.++.+..+ .+.|=.+.....+.
T Consensus       103 H~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~-h~~IKpL~~n~k~i  180 (737)
T KOG1524|consen  103 HAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGG-HISIKPLAANSKII  180 (737)
T ss_pred             hhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecCC-eEEEeeccccccee
Confidence            447899999999999999999999999999 5665555555555689999999999888777644 66666665555555


Q ss_pred             ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 015490          246 PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDIS  325 (406)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~  325 (406)
                      .... |++.+.++.|++...      +++++++|-..++||... ..+..-..|..+|++++|.|+ +.++.++. ++++
T Consensus       181 ~WkA-HDGiiL~~~W~~~s~------lI~sgGED~kfKvWD~~G-~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R  250 (737)
T KOG1524|consen  181 RWRA-HDGLVLSLSWSTQSN------IIASGGEDFRFKIWDAQG-ANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTAR  250 (737)
T ss_pred             EEec-cCcEEEEeecCcccc------ceeecCCceeEEeecccC-cccccCChhccceeeeeeccc-cceeeeee-eeee
Confidence            5554 466788999999887      678999999999999874 667777788999999999999 66666553 2333


Q ss_pred             EEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEE
Q 015490          326 IIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTV  371 (406)
Q Consensus       326 i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~  371 (406)
                                  +.....+.|..++||+||..++.|+..|.+.+=.
T Consensus       251 ------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~  284 (737)
T KOG1524|consen  251 ------------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVAY  284 (737)
T ss_pred             ------------ecCCCccceEEEEEcCCCceeeccccCceEEEee
Confidence                        3335678899999999999999999888776543

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.72  E-value=4.1e-16  Score=140.04  Aligned_cols=233  Identities=11%  Similarity=0.124  Sum_probs=156.8

Q ss_pred             cEEEEEEecCCCCccccceeEEecCCCCceEEEEcc-CCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc
Q 015490           88 AVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHP-HGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE  165 (406)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (406)
                      .+.++.++...+. +...+-.+ .....|+.+.|.| |...|++++ ++.++||.+......+..       ..+-..+.
T Consensus       604 ~iai~el~~PGrL-PDgv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~-------~tPe~~lt  674 (1012)
T KOG1445|consen  604 VIAIYELNEPGRL-PDGVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE-------MTPEKILT  674 (1012)
T ss_pred             eEEEEEcCCCCCC-Cccccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc-------CCcceeee
Confidence            4566666654422 11111122 2345789999999 455777777 899999998776543321       11222233


Q ss_pred             -ccCcEEEEEECC-CCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCee
Q 015490          166 -NVGQQLALTFDS-EGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAV  243 (406)
Q Consensus       166 -~~~~v~~~~~s~-~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~  243 (406)
                       |...|+.+.|+| ....|+++++|-+|++||+.+++....+.+|.+.|.+++|||+|+.+++.+.||++++|+.++++.
T Consensus       675 ~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~  754 (1012)
T KOG1445|consen  675 IHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ  754 (1012)
T ss_pred             cccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC
Confidence             347899999999 457899999999999999999999999999999999999999999999999999999999987653


Q ss_pred             -eeecccCCcceEEEEEEEcCCCCceEEEEEEEc---CCCcEEEEEeCCCce--EEEEeeecC-CCeEEEEEcCCCC-EE
Q 015490          244 -ATPLAKENDELFASCRFSPLNNEDYVLYIAAIT---DRGASIVTWNTTTWK--RIRTKQVVR-EPVSSFNVSADGK-LL  315 (406)
Q Consensus       244 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~i~~~d~~~~~--~~~~~~~~~-~~i~~~~~sp~~~-~l  315 (406)
                       ++.-.+..+..-..+.|.-+++.     ++++|   .....|.+||.++-.  .+.+....- -.+.--.+.+|.+ ++
T Consensus       755 pv~Eg~gpvgtRgARi~wacdgr~-----viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lf  829 (1012)
T KOG1445|consen  755 PVYEGKGPVGTRGARILWACDGRI-----VIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLF  829 (1012)
T ss_pred             ccccCCCCccCcceeEEEEecCcE-----EEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEE
Confidence             33333333333446788888884     33333   335678888876532  233322211 1122233555655 45


Q ss_pred             EEEeCCCcEEEEECCCceE
Q 015490          316 AVGTASGDISIIDSSSLQV  334 (406)
Q Consensus       316 ~~~~~dg~i~i~d~~~~~~  334 (406)
                      ++|-.|..|.+|.+-...+
T Consensus       830 ltGKGD~~v~~yEv~~esP  848 (1012)
T KOG1445|consen  830 LTGKGDRFVNMYEVIYESP  848 (1012)
T ss_pred             EecCCCceEEEEEecCCCc
Confidence            5666699999999865443

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.71  E-value=1.8e-15  Score=133.43  Aligned_cols=220  Identities=13%  Similarity=0.154  Sum_probs=150.5

Q ss_pred             CceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEE-----CCCCCEEEEeeCCC
Q 015490          115 LPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTF-----DSEGTIFAAGSENG  189 (406)
Q Consensus       115 ~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----s~~g~~l~~~~~dg  189 (406)
                      .+....++-.|++|+......+.+|.+......         .....+.+-......|-+|     .|++--+..|-.-|
T Consensus       125 ~~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~---------~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tG  195 (636)
T KOG2394|consen  125 IVTNTNQSGKGDRLCFNVGRELYVYSYRGAADL---------SKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTG  195 (636)
T ss_pred             ceeeccccCCCCEEEEecCCeEEEEEccCcchh---------ccchhhhcccCCCCceecccccccCCCCcceEEeeccC
Confidence            455666666778888776777777766532111         0000011111122233344     35666777888889


Q ss_pred             eEEEEeCCCcceEeeeec-----cCCceeEEEEccCCC-EEEEEeCCCCEEEEEcCC--------------Ce-------
Q 015490          190 NLRVFKWPSLEIILNESE-----AHASVKDLSFSPDGK-FLVSLGNRGPGRVWDLAS--------------SA-------  242 (406)
Q Consensus       190 ~i~vwd~~~~~~~~~~~~-----~~~~i~~~~~s~~~~-~l~s~s~d~~i~iwd~~~--------------~~-------  242 (406)
                      .|.+.|....+ +..+..     ....|+++.|-|.+. .++++-.+|.+++||..-              +.       
T Consensus       196 qvq~idp~~~~-~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~  274 (636)
T KOG2394|consen  196 QVQLIDPINFE-VSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTS  274 (636)
T ss_pred             ceEEecchhhH-HHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeee
Confidence            99998875522 212111     124899999988544 566677899999997631              10       


Q ss_pred             -------eeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEE
Q 015490          243 -------VATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLL  315 (406)
Q Consensus       243 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l  315 (406)
                             ++..+.. ....+...+|+||+++      +++.+.||.++|+|..+.+.+..++..-+...|++|||||+||
T Consensus       275 ksk~~rNPv~~w~~-~~g~in~f~FS~DG~~------LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyI  347 (636)
T KOG2394|consen  275 KSKKTRNPVARWHI-GEGSINEFAFSPDGKY------LATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYI  347 (636)
T ss_pred             eccccCCccceeEe-ccccccceeEcCCCce------EEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEE
Confidence                   0111111 1225678899999985      5666899999999999987776666555778999999999999


Q ss_pred             EEEeCCCcEEEEECCCceEEEEeecccccceEEEEEc
Q 015490          316 AVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFS  352 (406)
Q Consensus       316 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s  352 (406)
                      ++|++|.-|.||.+...+.+..=. +|..+|..++|.
T Consensus       348 vtGGEDDLVtVwSf~erRVVARGq-GHkSWVs~VaFD  383 (636)
T KOG2394|consen  348 VTGGEDDLVTVWSFEERRVVARGQ-GHKSWVSVVAFD  383 (636)
T ss_pred             EecCCcceEEEEEeccceEEEecc-ccccceeeEeec
Confidence            999999999999999999988875 999999999998

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=2.5e-14  Score=120.50  Aligned_cols=256  Identities=13%  Similarity=0.072  Sum_probs=164.1

Q ss_pred             CCCCceEEEEccCCC-eEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeC-CC
Q 015490          112 DSDLPYRMAIHPHGD-GIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE-NG  189 (406)
Q Consensus       112 h~~~v~~~~~sp~~~-~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg  189 (406)
                      .+..|+|++|-|.+. .|++++...+.||..+.........-........+....++..|+++.|++||..+++++. |.
T Consensus       139 sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gss  218 (445)
T KOG2139|consen  139 SQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSS  218 (445)
T ss_pred             hhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcc
Confidence            457899999999764 6677778888998876542211110001001112223345678999999999999999876 56


Q ss_pred             eEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceE
Q 015490          190 NLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYV  269 (406)
Q Consensus       190 ~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (406)
                      .|.|||.+++..+.-.....+.++-+.||||+.+|+.++-|+..++|+..............+ .+....|+|+|+.  +
T Consensus       219 si~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsg-rvqtacWspcGsf--L  295 (445)
T KOG2139|consen  219 SIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSG-RVQTACWSPCGSF--L  295 (445)
T ss_pred             eEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCC-ceeeeeecCCCCE--E
Confidence            899999999887755545556889999999999999999999999997654433333332333 6888999999995  2


Q ss_pred             EEEEEEcCCCcEEEEEeCCC--ce-----------EEEEe------e---ecCCCeEEEEEcCCCCEEEEEeCCC-----
Q 015490          270 LYIAAITDRGASIVTWNTTT--WK-----------RIRTK------Q---VVREPVSSFNVSADGKLLAVGTASG-----  322 (406)
Q Consensus       270 l~~~~~~~~~~~i~~~d~~~--~~-----------~~~~~------~---~~~~~i~~~~~sp~~~~l~~~~~dg-----  322 (406)
                         +.+......++-.....  ..           .+..+      .   .-.+.+.+++|+|.|.+||+.-..+     
T Consensus       296 ---Lf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~  372 (445)
T KOG2139|consen  296 ---LFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLL  372 (445)
T ss_pred             ---EEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhh
Confidence               22223333333222111  00           00001      0   1135788999999999999876533     


Q ss_pred             ---cEEEEECCCceEEEEeecc--cccceEEEEEcC---CCCeEEEEECCCcEEEEEec
Q 015490          323 ---DISIIDSSSLQVRTAVKKA--HLGIVTALAFSY---DSRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       323 ---~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~sp---~~~~l~s~s~dg~i~iw~~~  373 (406)
                         .|.+||.+..-......-+  ......-++|+|   ++++|..+=.-|.+.-|++.
T Consensus       373 ~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  373 CKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             hhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence               3677887754443333111  111244566666   56777666677888888764

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=1.4e-14  Score=135.19  Aligned_cols=238  Identities=16%  Similarity=0.121  Sum_probs=156.0

Q ss_pred             EEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeecccc
Q 015490           89 VLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLEN  166 (406)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (406)
                      ..++.++.+.     .....+..|...+.+.+|+|||+.|+..+  ++.-.||.|+..++... .         +  ...
T Consensus       182 ~~l~~~d~dg-----~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~---------l--~~~  244 (435)
T PRK05137        182 KRLAIMDQDG-----ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-L---------V--GNF  244 (435)
T ss_pred             eEEEEECCCC-----CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-E---------e--ecC
Confidence            3566666544     34456778888999999999999988875  44567888887644321 1         1  112


Q ss_pred             cCcEEEEEECCCCCEEE-EeeCCC--eEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeC-CC--CEEEEEcCC
Q 015490          167 VGQQLALTFDSEGTIFA-AGSENG--NLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGN-RG--PGRVWDLAS  240 (406)
Q Consensus       167 ~~~v~~~~~s~~g~~l~-~~~~dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~-d~--~i~iwd~~~  240 (406)
                      .+.+...+|+|||+.|+ +.+.++  .|++||+.+++.. .+..+........|+|||+.|+..+. ++  .|+++|+.+
T Consensus       245 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g  323 (435)
T PRK05137        245 PGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG  323 (435)
T ss_pred             CCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC
Confidence            34566889999998776 445555  4778898877654 44444455678999999999888774 33  588888876


Q ss_pred             CeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC
Q 015490          241 SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA  320 (406)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~  320 (406)
                      ++... +... ...+....|+|+++.   +++.........|.+||+.++.. ..+.. ...+..+.|+|||+.|+..+.
T Consensus       324 ~~~~~-lt~~-~~~~~~~~~SpdG~~---ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spDG~~i~~~~~  396 (435)
T PRK05137        324 SNPRR-ISFG-GGRYSTPVWSPRGDL---IAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPNGRVIMFFRQ  396 (435)
T ss_pred             CCeEE-eecC-CCcccCeEECCCCCE---EEEEEcCCCceEEEEEECCCCce-EeccC-CCCCCCCeECCCCCEEEEEEc
Confidence            65433 3222 223456889999985   22222223345789999865443 33332 234678999999999887654


Q ss_pred             C------CcEEEEECCCceEEEEeecccccceEEEEEcCC
Q 015490          321 S------GDISIIDSSSLQVRTAVKKAHLGIVTALAFSYD  354 (406)
Q Consensus       321 d------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~  354 (406)
                      +      ..+.++|+..+.. ..+.  ..+.+...+|+|-
T Consensus       397 ~~~~~~~~~L~~~dl~g~~~-~~l~--~~~~~~~p~Wsp~  433 (435)
T PRK05137        397 TPGSGGAPKLYTVDLTGRNE-REVP--TPGDASDPAWSPL  433 (435)
T ss_pred             cCCCCCcceEEEEECCCCce-EEcc--CCCCccCcccCCC
Confidence            3      2588888876554 3443  3445677788763

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=5.4e-15  Score=137.39  Aligned_cols=238  Identities=15%  Similarity=0.149  Sum_probs=150.8

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeeccccc
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV  167 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (406)
                      .++.+|.+.     .....+..+...+.+.+|+|||+.|+.++  ++.-.||.++..+++...          +.  ...
T Consensus       177 ~L~~~D~dG-----~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----------l~--~~~  239 (427)
T PRK02889        177 QLQISDADG-----QNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----------VA--NFK  239 (427)
T ss_pred             EEEEECCCC-----CCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----------ee--cCC
Confidence            566666544     23345567788899999999999998876  344568888876543211          11  122


Q ss_pred             CcEEEEEECCCCCEEE-EeeCCCeEEEEe--CCCcceEeeeeccCCceeEEEEccCCCEEEEEeC-CCCEEEEEc--CCC
Q 015490          168 GQQLALTFDSEGTIFA-AGSENGNLRVFK--WPSLEIILNESEAHASVKDLSFSPDGKFLVSLGN-RGPGRVWDL--ASS  241 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~-~~~~dg~i~vwd--~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~-d~~i~iwd~--~~~  241 (406)
                      +.+.+.+|+|||+.|+ +.+.+|...||.  +.++. ...+..+........|+|||+.|+..+. ++...+|.+  .++
T Consensus       240 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g  318 (427)
T PRK02889        240 GSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG  318 (427)
T ss_pred             CCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC
Confidence            3456789999998876 456677766665  44443 3444444445677899999998887664 456666654  444


Q ss_pred             eeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCC
Q 015490          242 AVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAS  321 (406)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d  321 (406)
                      +..... .. ........|+|+++.   ++.....+....|++||+.+++.. .+... .......|+|||+.|+..+.+
T Consensus       319 ~~~~lt-~~-g~~~~~~~~SpDG~~---Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~-~~~~~p~~spdg~~l~~~~~~  391 (427)
T PRK02889        319 AAQRVT-FT-GSYNTSPRISPDGKL---LAYISRVGGAFKLYVQDLATGQVT-ALTDT-TRDESPSFAPNGRYILYATQQ  391 (427)
T ss_pred             ceEEEe-cC-CCCcCceEECCCCCE---EEEEEccCCcEEEEEEECCCCCeE-EccCC-CCccCceECCCCCEEEEEEec
Confidence            432222 11 122345789999985   222221222347999999887643 33322 334678999999999887764


Q ss_pred             C---cEEEEECCCceEEEEeecccccceEEEEEcCC
Q 015490          322 G---DISIIDSSSLQVRTAVKKAHLGIVTALAFSYD  354 (406)
Q Consensus       322 g---~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~  354 (406)
                      +   .+.+.++. +.....+. .+.+.+...+|+|-
T Consensus       392 ~g~~~l~~~~~~-g~~~~~l~-~~~g~~~~p~wsp~  425 (427)
T PRK02889        392 GGRSVLAAVSSD-GRIKQRLS-VQGGDVREPSWGPF  425 (427)
T ss_pred             CCCEEEEEEECC-CCceEEee-cCCCCCCCCccCCC
Confidence            3   36666763 55555554 46677888889873

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=3.8e-16  Score=133.90  Aligned_cols=194  Identities=15%  Similarity=0.205  Sum_probs=146.3

Q ss_pred             eEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEe
Q 015490          117 YRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFK  195 (406)
Q Consensus       117 ~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd  195 (406)
                      .+++|+++|..+++++ |+.+|||+|...             ........|+..|.++.|||||++|++-+.| ..+||+
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~-------------~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~  213 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM-------------LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWS  213 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcc-------------hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEE
Confidence            6899999999999997 999999998753             2233345678999999999999999999999 899999


Q ss_pred             CCCcceEeeeeccCC--ceeEEEEccCC---CE--EEEEeCCCCEEEEEcCCCee---eeecc-cCCcceEEEEEEEcCC
Q 015490          196 WPSLEIILNESEAHA--SVKDLSFSPDG---KF--LVSLGNRGPGRVWDLASSAV---ATPLA-KENDELFASCRFSPLN  264 (406)
Q Consensus       196 ~~~~~~~~~~~~~~~--~i~~~~~s~~~---~~--l~s~s~d~~i~iwd~~~~~~---~~~~~-~~~~~~~~~~~~~~~~  264 (406)
                      .+++..+........  ....+.|+.|+   .+  ++....-+.|+.||+.....   .+..+ ......+.+++.+++|
T Consensus       214 ~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dG  293 (398)
T KOG0771|consen  214 VNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDG  293 (398)
T ss_pred             eccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCC
Confidence            999976655542222  66778888877   32  33334456777777643221   11111 1123358899999999


Q ss_pred             CCceEEEEEEEcCCCcEEEEEeCCCceEEEEe-eecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 015490          265 NEDYVLYIAAITDRGASIVTWNTTTWKRIRTK-QVVREPVSSFNVSADGKLLAVGTASGDISIIDSS  330 (406)
Q Consensus       265 ~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~  330 (406)
                      +      +++.++.+|.|.+++..+.+.+.-. +.|...|+.+.|+||.+++++.+.+....+..+.
T Consensus       294 k------f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  294 K------FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             c------EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence            9      4677788999999999887765544 4678899999999999999998888888877664

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.71  E-value=1.8e-17  Score=143.36  Aligned_cols=200  Identities=15%  Similarity=0.263  Sum_probs=173.0

Q ss_pred             EEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeeccc
Q 015490          170 QLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAK  249 (406)
Q Consensus       170 v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  249 (406)
                      ...+.++.+|+.++.|+..|.|..+|+.+++....+.- ...|.++.|..+.+++|++- ...++|||- .|..++.+..
T Consensus       132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~-~GtElHClk~  208 (545)
T KOG1272|consen  132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQ-KKYVYVYDN-NGTELHCLKR  208 (545)
T ss_pred             CeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhh-hceEEEecC-CCcEEeehhh
Confidence            45789999999999999999999999999988766543 34689999998888777665 558999996 5677777764


Q ss_pred             CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 015490          250 ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDS  329 (406)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~  329 (406)
                      +  ..+..+.|.|..      |++++++..|.+..-|+.+|+.+..+....+.+..|+-+|-+..+-+|...|+|.+|..
T Consensus       209 ~--~~v~rLeFLPyH------fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP  280 (545)
T KOG1272|consen  209 H--IRVARLEFLPYH------FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSP  280 (545)
T ss_pred             c--Cchhhhcccchh------heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCC
Confidence            4  346788999975      47788899999999999999999999888899999999999999999999999999999


Q ss_pred             CCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490          330 SSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       330 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~  381 (406)
                      ...+++..+. .|.++|.++++.++|+|++|.+.|..++|||++.-..+.+.
T Consensus       281 ~skePLvKiL-cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~  331 (545)
T KOG1272|consen  281 NSKEPLVKIL-CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTY  331 (545)
T ss_pred             CCcchHHHHH-hcCCCcceEEECCCCcEEeecccccceeEeeecccccccee
Confidence            9999988886 89999999999999999999999999999999987765443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=7.2e-15  Score=137.03  Aligned_cols=237  Identities=15%  Similarity=0.134  Sum_probs=153.6

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeeccccc
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV  167 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (406)
                      .++.+|...     .....+..|...+.+.+|+|||+.|+..+  ++...||.++..+++...          +..  ..
T Consensus       185 ~l~i~D~~g-----~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~----------l~~--~~  247 (433)
T PRK04922        185 ALQVADSDG-----YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL----------VAS--FR  247 (433)
T ss_pred             EEEEECCCC-----CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE----------ecc--CC
Confidence            455566543     23455667788899999999999999876  344567777765443211          111  12


Q ss_pred             CcEEEEEECCCCCEEEE-eeCCC--eEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeC-CCC--EEEEEcCCC
Q 015490          168 GQQLALTFDSEGTIFAA-GSENG--NLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGN-RGP--GRVWDLASS  241 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~-~~~dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~-d~~--i~iwd~~~~  241 (406)
                      +...+.+|+|||+.++. .+.+|  .|++||+.+++.. .+..+......++|+|||++|+.++. ++.  |+++|+.++
T Consensus       248 g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g  326 (433)
T PRK04922        248 GINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG  326 (433)
T ss_pred             CCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            33457899999987764 44555  6999999887654 34444444567899999999887764 444  666777666


Q ss_pred             eeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCC
Q 015490          242 AVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAS  321 (406)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d  321 (406)
                      +..... .. .......+|+|+++.   +++....+....|.+||+.+++.. .+.. ........|+|||++|+..+.+
T Consensus       327 ~~~~lt-~~-g~~~~~~~~SpDG~~---Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~-~~~~~~p~~spdG~~i~~~s~~  399 (433)
T PRK04922        327 SAERLT-FQ-GNYNARASVSPDGKK---IAMVHGSGGQYRIAVMDLSTGSVR-TLTP-GSLDESPSFAPNGSMVLYATRE  399 (433)
T ss_pred             CeEEee-cC-CCCccCEEECCCCCE---EEEEECCCCceeEEEEECCCCCeE-ECCC-CCCCCCceECCCCCEEEEEEec
Confidence            543322 11 222346899999985   222212222347999999887654 3332 2234578999999998877663


Q ss_pred             ---CcEEEEECCCceEEEEeecccccceEEEEEcC
Q 015490          322 ---GDISIIDSSSLQVRTAVKKAHLGIVTALAFSY  353 (406)
Q Consensus       322 ---g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp  353 (406)
                         +.|.++++.. .....+. .+.+.+..++|+|
T Consensus       400 ~g~~~L~~~~~~g-~~~~~l~-~~~g~~~~p~wsp  432 (433)
T PRK04922        400 GGRGVLAAVSTDG-RVRQRLV-SADGEVREPAWSP  432 (433)
T ss_pred             CCceEEEEEECCC-CceEEcc-cCCCCCCCCccCC
Confidence               4588888854 4445553 4566778888886

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.70  E-value=4.3e-16  Score=137.26  Aligned_cols=239  Identities=16%  Similarity=0.203  Sum_probs=164.4

Q ss_pred             cCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCe
Q 015490          111 TDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGN  190 (406)
Q Consensus       111 ~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  190 (406)
                      .|..-|.|+.|+.+...+.++.|....+  |..........+..++.  .+-+..|..+ .+..=-.....|+.++.||.
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~--~~~~~~~s~~~~~~p~d--f~pt~~h~~~-rs~~~g~~~d~~~i~s~DGk   86 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFK--WSDVSRDSVEVAKLPDD--FVPTDMHLGG-RSSGGGKGSDTLLICSNDGR   86 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEE--eecccchhhhhhhCCcc--cCCccccccc-cccCCCCCcceEEEEcCCce
Confidence            4666778999998887777665554333  33222222222211111  1111111000 00000012257888899999


Q ss_pred             EEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEE
Q 015490          191 LRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVL  270 (406)
Q Consensus       191 i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  270 (406)
                      +.+.+ +.++....+..|.+.+.+-.|+|||.-|++++.||.|++|.- +|-...++ ......++|++|.|+.+.  ++
T Consensus        87 f~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl-~Q~~~~v~c~~W~p~S~~--vl  161 (737)
T KOG1524|consen   87 FVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTV-VQNEESIRCARWAPNSNS--IV  161 (737)
T ss_pred             EEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHH-hhcCceeEEEEECCCCCc--eE
Confidence            99988 566666777888889999999999999999999999999985 33332222 345667999999999987  22


Q ss_pred             EEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEE
Q 015490          271 YIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALA  350 (406)
Q Consensus       271 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~  350 (406)
                         .+  ..+.+.+=-+.....+-..+.|.+-|.++.|++..+.+++|++|-..++||.. |..+..-. .|..+|++++
T Consensus       162 ---~c--~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~-~~ey~ITSva  234 (737)
T KOG1524|consen  162 ---FC--QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSA-AEEYAITSVA  234 (737)
T ss_pred             ---Ee--cCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCC-hhccceeeee
Confidence               22  24566666666556667788999999999999999999999999999999976 55555543 7999999999


Q ss_pred             EcCCCCeEEEEECCCcEE
Q 015490          351 FSYDSRALVSASMDSSVR  368 (406)
Q Consensus       351 ~sp~~~~l~s~s~dg~i~  368 (406)
                      |.|+ ..++.+|.+ ++|
T Consensus       235 ~npd-~~~~v~S~n-t~R  250 (737)
T KOG1524|consen  235 FNPE-KDYLLWSYN-TAR  250 (737)
T ss_pred             eccc-cceeeeeee-eee
Confidence            9999 666666643 444

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.70  E-value=1.4e-12  Score=117.93  Aligned_cols=270  Identities=18%  Similarity=0.255  Sum_probs=175.6

Q ss_pred             cCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEec-----CCeEEEEEecccccceeecceeccce
Q 015490           85 IRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQ-----NSCRLFEWDEVENTEIRRLGVKISEK  159 (406)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~  159 (406)
                      ....+..+.+|.+...+..  +... ........++++|++++|.++..     +.+..|.++..++.. .         
T Consensus        11 ~~~gI~~~~~d~~~g~l~~--~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L-~---------   77 (345)
T PF10282_consen   11 KGGGIYVFRFDEETGTLTL--VQTV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTL-T---------   77 (345)
T ss_dssp             SSTEEEEEEEETTTTEEEE--EEEE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEE-E---------
T ss_pred             CCCcEEEEEEcCCCCCceE--eeee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCccee-E---------
Confidence            3457788888887766532  2222 24456688999999999998863     345555555432211 1         


Q ss_pred             eeeccc-ccCcEEEEEECCCCCEEEEeeC-CCeEEEEeCCC-cceEee--ee-----------ccCCceeEEEEccCCCE
Q 015490          160 VLSQLE-NVGQQLALTFDSEGTIFAAGSE-NGNLRVFKWPS-LEIILN--ES-----------EAHASVKDLSFSPDGKF  223 (406)
Q Consensus       160 ~~~~~~-~~~~v~~~~~s~~g~~l~~~~~-dg~i~vwd~~~-~~~~~~--~~-----------~~~~~i~~~~~s~~~~~  223 (406)
                      .+.... .......++++|++++|+++.. +|.|.++++.. +.....  ..           .......++.++|++++
T Consensus        78 ~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~  157 (345)
T PF10282_consen   78 LLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRF  157 (345)
T ss_dssp             EEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSE
T ss_pred             EeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCE
Confidence            111122 2344567999999999998865 89999999976 332221  11           11226789999999998


Q ss_pred             EEEEeC-CCCEEEEEcCCCe--e--eeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC--Cce--EEE
Q 015490          224 LVSLGN-RGPGRVWDLASSA--V--ATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT--TWK--RIR  294 (406)
Q Consensus       224 l~s~s~-d~~i~iwd~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~--~~~--~~~  294 (406)
                      +++... ...|.+|++....  .  ...+....+...+.+.|+|+++.     +.+....++.|.++++.  ++.  .+.
T Consensus       158 v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~-----~Yv~~e~s~~v~v~~~~~~~g~~~~~~  232 (345)
T PF10282_consen  158 VYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKY-----AYVVNELSNTVSVFDYDPSDGSLTEIQ  232 (345)
T ss_dssp             EEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSE-----EEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred             EEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCE-----EEEecCCCCcEEEEeecccCCceeEEE
Confidence            887643 3479999997654  2  22334445556789999999985     44556778999999887  443  222


Q ss_pred             Eeeec------CCCeEEEEEcCCCCEEEEEeC-CCcEEEEECC--Cc--eEEEEeecccccceEEEEEcCCCCeEEEEE-
Q 015490          295 TKQVV------REPVSSFNVSADGKLLAVGTA-SGDISIIDSS--SL--QVRTAVKKAHLGIVTALAFSYDSRALVSAS-  362 (406)
Q Consensus       295 ~~~~~------~~~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~--~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s-  362 (406)
                      .....      ......+.++|||++|+++.. .+.|.+|++.  ++  +.+..+. ......+.++++|+|++|+++. 
T Consensus       233 ~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~-~~G~~Pr~~~~s~~g~~l~Va~~  311 (345)
T PF10282_consen  233 TISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP-TGGKFPRHFAFSPDGRYLYVANQ  311 (345)
T ss_dssp             EEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE-ESSSSEEEEEE-TTSSEEEEEET
T ss_pred             EeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe-CCCCCccEEEEeCCCCEEEEEec
Confidence            22211      125788999999999998776 6789999993  23  3333333 2234478999999999998877 


Q ss_pred             CCCcEEEEEec
Q 015490          363 MDSSVRVTVIE  373 (406)
Q Consensus       363 ~dg~i~iw~~~  373 (406)
                      .++.|.+|+++
T Consensus       312 ~s~~v~vf~~d  322 (345)
T PF10282_consen  312 DSNTVSVFDID  322 (345)
T ss_dssp             TTTEEEEEEEE
T ss_pred             CCCeEEEEEEe
Confidence            56789999885

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.70  E-value=1.1e-15  Score=126.62  Aligned_cols=202  Identities=18%  Similarity=0.228  Sum_probs=158.6

Q ss_pred             cCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc---eEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCC-Ce
Q 015490          167 VGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLE---IILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLAS-SA  242 (406)
Q Consensus       167 ~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~-~~  242 (406)
                      ..+|+|.+|++|+..+|++..+..|.||.....+   ....+..|...|+.++|+|..+.|++++.|..-++|.... ++
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~   89 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT   89 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence            3689999999999999999999999999986554   5667778888999999999999999999999999999843 33


Q ss_pred             eee--ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEE----EEeeecCCCeEEEEEcCCCCEEE
Q 015490          243 VAT--PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRI----RTKQVVREPVSSFNVSADGKLLA  316 (406)
Q Consensus       243 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~----~~~~~~~~~i~~~~~sp~~~~l~  316 (406)
                      -..  .+. ......+++.|+|.++.      ++.++....|.+|-.+....-    ..-+.+...|.+++|+|++-+|+
T Consensus        90 WkptlvLl-RiNrAAt~V~WsP~enk------FAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLla  162 (361)
T KOG1523|consen   90 WKPTLVLL-RINRAATCVKWSPKENK------FAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLA  162 (361)
T ss_pred             eccceeEE-EeccceeeEeecCcCce------EEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceec
Confidence            222  222 23456789999999985      566677788888776543321    12233457899999999999999


Q ss_pred             EEeCCCcEEEEECCC------------------ceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490          317 VGTASGDISIIDSSS------------------LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       317 ~~~~dg~i~i~d~~~------------------~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~  376 (406)
                      +|+.|+..++|..--                  |+...++. ...+.|..+.|+|+|..|+-.+.|+++.+-|...+.
T Consensus       163 aGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  163 AGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             ccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence            999999999997521                  12222332 356789999999999999999999999999987775

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.69  E-value=5.6e-15  Score=139.95  Aligned_cols=245  Identities=17%  Similarity=0.256  Sum_probs=173.8

Q ss_pred             CCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECC--CCCEEEEeeCCCe
Q 015490          114 DLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDS--EGTIFAAGSENGN  190 (406)
Q Consensus       114 ~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~~~~dg~  190 (406)
                      .+...+.|+|-...++++. ...+++|+|..  ++....++..        ......|+.+.+-.  |..++++|+.||.
T Consensus      1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~--~~~l~~F~n~--------~~~~t~Vs~l~liNe~D~aLlLtas~dGv 1134 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEK--GRLLNGFDNG--------AFPDTRVSDLELINEQDDALLLTASSDGV 1134 (1387)
T ss_pred             CCCceeeecCCCceeEEcCCcceEEEEeccc--CceeccccCC--------CCCCCccceeeeecccchhheeeeccCce
Confidence            3567788999988888886 55667777764  2322222210        01225688888865  4578999999999


Q ss_pred             EEEEeCC-C----cceEeeeec-------cCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEE
Q 015490          191 LRVFKWP-S----LEIILNESE-------AHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASC  258 (406)
Q Consensus       191 i~vwd~~-~----~~~~~~~~~-------~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  258 (406)
                      |+||+-- +    .+.+....+       ..+.=.-+.|.....+|+++++-..|+|||.........+.......++++
T Consensus      1135 IRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaL 1214 (1387)
T KOG1517|consen 1135 IRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTAL 1214 (1387)
T ss_pred             EEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceee
Confidence            9999742 2    223322221       111113467877777888888888999999999998888887777777777


Q ss_pred             EEEcCCCCceEEEEEEEcCCCcEEEEEeCCCce---EEEEeeecCCC--eEEEEEcCCCCE-EEEEeCCCcEEEEECCCc
Q 015490          259 RFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK---RIRTKQVVREP--VSSFNVSADGKL-LAVGTASGDISIIDSSSL  332 (406)
Q Consensus       259 ~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~--i~~~~~sp~~~~-l~~~~~dg~i~i~d~~~~  332 (406)
                      .-+-.+..     +++.|-.||.|++||.+...   .+...+.|...  |..+.+.+.|-- |++|+.+|.|++||++..
T Consensus      1215 S~~~~~gn-----~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1215 SADLVHGN-----IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred             cccccCCc-----eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence            65554433     56777889999999998643   35666677665  999999987754 999999999999999874


Q ss_pred             eEEEEee-cccc--c-ceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490          333 QVRTAVK-KAHL--G-IVTALAFSYDSRALVSASMDSSVRVTVIED  374 (406)
Q Consensus       333 ~~~~~~~-~~~~--~-~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~  374 (406)
                      .....+. ..|.  + ..+++..+++...+|+|+. +.|+||++..
T Consensus      1290 ~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1290 SKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG 1334 (1387)
T ss_pred             cccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh
Confidence            2221111 1232  3 5899999999999999988 9999999854

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=4.3e-14  Score=132.03  Aligned_cols=201  Identities=14%  Similarity=0.105  Sum_probs=137.5

Q ss_pred             ccCcEEEEEECCCCCEEEEeeC---CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEE-EeCCCC--EEEEEcC
Q 015490          166 NVGQQLALTFDSEGTIFAAGSE---NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVS-LGNRGP--GRVWDLA  239 (406)
Q Consensus       166 ~~~~v~~~~~s~~g~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s-~s~d~~--i~iwd~~  239 (406)
                      +...+.+.+|+|||+.|+..+.   +..|++||+.+++.. .+......+...+|+|||+.|+. .+.++.  |++||+.
T Consensus       200 ~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~  278 (435)
T PRK05137        200 GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR  278 (435)
T ss_pred             CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECC
Confidence            4567899999999998888754   468999999887654 34444556788999999998764 455554  7777988


Q ss_pred             CCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEe
Q 015490          240 SSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGT  319 (406)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~  319 (406)
                      +++... +.. +........|+|+++.   +++.........|+++|+.+++. ..+..+...+....|+|||++|+...
T Consensus       279 ~~~~~~-Lt~-~~~~~~~~~~spDG~~---i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~  352 (435)
T PRK05137        279 SGTTTR-LTD-SPAIDTSPSYSPDGSQ---IVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTK  352 (435)
T ss_pred             CCceEE-ccC-CCCccCceeEcCCCCE---EEEEECCCCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEE
Confidence            776543 332 2234557899999986   22222123345799999877654 33433445567789999999998876


Q ss_pred             CC---CcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECC------CcEEEEEecCCc
Q 015490          320 AS---GDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMD------SSVRVTVIEDKK  376 (406)
Q Consensus       320 ~d---g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d------g~i~iw~~~~~~  376 (406)
                      .+   ..|.+||+.++.. ..+.  ....+..+.|+|||++|+..+.+      ..++++++..++
T Consensus       353 ~~~~~~~i~~~d~~~~~~-~~lt--~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~  415 (435)
T PRK05137        353 QGGGQFSIGVMKPDGSGE-RILT--SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN  415 (435)
T ss_pred             cCCCceEEEEEECCCCce-Eecc--CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence            53   3588889865543 3333  22346788999999998765543      257777776543

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.69  E-value=2.6e-16  Score=130.76  Aligned_cols=229  Identities=15%  Similarity=0.147  Sum_probs=157.5

Q ss_pred             EEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEE-eeCCCeEEEEeC
Q 015490          118 RMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAA-GSENGNLRVFKW  196 (406)
Q Consensus       118 ~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~dg~i~vwd~  196 (406)
                      -..|||+|+++++..+..+.|.+..  +.            +..+.+..-+.|.-+.|..|..+++. ...++.|.+|++
T Consensus        13 ~c~fSp~g~yiAs~~~yrlviRd~~--tl------------q~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl   78 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRYRLVIRDSE--TL------------QLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSL   78 (447)
T ss_pred             ceeECCCCCeeeeeeeeEEEEeccc--hh------------hHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEe
Confidence            4689999999999987655554332  22            22222333456778899998866554 466889999999


Q ss_pred             CCcceEeeeeccCCceeEEEEccCCCEEEEE-eCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEE
Q 015490          197 PSLEIILNESEAHASVKDLSFSPDGKFLVSL-GNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAI  275 (406)
Q Consensus       197 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  275 (406)
                      ...+-...+.....++.++.|||||+.|+.. .-+-.|.+|.+.+.+....-  +....+..++|+|+++.     .+..
T Consensus        79 ~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~--~pK~~~kg~~f~~dg~f-----~ai~  151 (447)
T KOG4497|consen   79 VQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP--HPKTNVKGYAFHPDGQF-----CAIL  151 (447)
T ss_pred             ecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec--ccccCceeEEECCCCce-----eeee
Confidence            9998888888888899999999999766655 45888999999876654432  22334578999999984     3333


Q ss_pred             cCCCc--EEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC--CCcEEEEECCCceEEEEeecccccceEEEEE
Q 015490          276 TDRGA--SIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA--SGDISIIDSSSLQVRTAVKKAHLGIVTALAF  351 (406)
Q Consensus       276 ~~~~~--~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~  351 (406)
                      ...|.  .+.+.....+..++.+....-..+.+.|+|||+.||+-..  +-.|.           .+.  -.-.+..++|
T Consensus       152 sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~-----------aYe--~~lG~k~v~w  218 (447)
T KOG4497|consen  152 SRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY-----------AYE--RGLGLKFVEW  218 (447)
T ss_pred             ecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee-----------eee--eccceeEEEe
Confidence            23332  1222223344455666666667789999999999886432  22222           221  2245778999


Q ss_pred             cCCCCeEEEEECCCcEEEEEecCCcCCCC
Q 015490          352 SYDSRALVSASMDSSVRVTVIEDKKKSGG  380 (406)
Q Consensus       352 sp~~~~l~s~s~dg~i~iw~~~~~~~~~~  380 (406)
                      +|.+++|+.|+.|+.+||-+--+=+..++
T Consensus       219 sP~~qflavGsyD~~lrvlnh~tWk~f~e  247 (447)
T KOG4497|consen  219 SPCNQFLAVGSYDQMLRVLNHFTWKPFGE  247 (447)
T ss_pred             ccccceEEeeccchhhhhhceeeeeehhh
Confidence            99999999999999999877655444333

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.68  E-value=1.5e-14  Score=122.96  Aligned_cols=255  Identities=15%  Similarity=0.178  Sum_probs=176.7

Q ss_pred             cCCCCceEEEEccCCC--eEEEE-ecCCeEEEEEecccccceeecceeccceeeec-ccccCcEEEEEECCCCCEEEEee
Q 015490          111 TDSDLPYRMAIHPHGD--GIICA-LQNSCRLFEWDEVENTEIRRLGVKISEKVLSQ-LENVGQQLALTFDSEGTIFAAGS  186 (406)
Q Consensus       111 ~h~~~v~~~~~sp~~~--~l~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~~~  186 (406)
                      .....|.+++|.-++.  .+... .+..+..+.+...  .....+      ..+.. .-....|..+... | ..|++|-
T Consensus        53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~--~~~s~~------~~~~~~~l~~~~I~gl~~~-d-g~Litc~  122 (412)
T KOG3881|consen   53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEF--EISSSL------DDAKTVSLGTKSIKGLKLA-D-GTLITCV  122 (412)
T ss_pred             chhhhhhhheeecCCceeEeeccccCcccccccccCC--cccccc------ccccccccccccccchhhc-C-CEEEEEe
Confidence            3456778888876665  23333 2555555443321  111000      00000 1122445444443 3 3677888


Q ss_pred             CCCeEEEEeCCCcc----eEeeeeccCCceeEEEEccCCC-EEEEEeCC--CCEEEEEcCCCeeeeecccC--------C
Q 015490          187 ENGNLRVFKWPSLE----IILNESEAHASVKDLSFSPDGK-FLVSLGNR--GPGRVWDLASSAVATPLAKE--------N  251 (406)
Q Consensus       187 ~dg~i~vwd~~~~~----~~~~~~~~~~~i~~~~~s~~~~-~l~s~s~d--~~i~iwd~~~~~~~~~~~~~--------~  251 (406)
                      .+|.+.+|....+.    .+..+. ....+..+.-++... .+++|+..  ..+.+||+.+.+.+..-+..        -
T Consensus       123 ~sG~l~~~~~k~~d~hss~l~~la-~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrV  201 (412)
T KOG3881|consen  123 SSGNLQVRHDKSGDLHSSKLIKLA-TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRV  201 (412)
T ss_pred             cCCcEEEEeccCCccccccceeee-cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCcccccee
Confidence            89999999987443    222222 234566677676555 45558888  78999999988655433321        1


Q ss_pred             cceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc-eEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 015490          252 DELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW-KRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSS  330 (406)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~  330 (406)
                      .-.++.+.|.+....    +.++++..-+.+++||.+.+ +++..+.....+++++...|++++|++|...|.+..||++
T Consensus       202 PvW~tdi~Fl~g~~~----~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r  277 (412)
T KOG3881|consen  202 PVWITDIRFLEGSPN----YKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLR  277 (412)
T ss_pred             eeeeccceecCCCCC----ceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheeccc
Confidence            224667888887432    34566778899999999865 5688888888999999999999999999999999999999


Q ss_pred             CceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCC
Q 015490          331 SLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGG  380 (406)
Q Consensus       331 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~  380 (406)
                      .++.......+..+.|+++..+|.+++|++++.|..|||+|+++.+.+..
T Consensus       278 ~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~k  327 (412)
T KOG3881|consen  278 GGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHK  327 (412)
T ss_pred             CceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhh
Confidence            99998884458999999999999999999999999999999999766443

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=4.5e-14  Score=131.13  Aligned_cols=196  Identities=14%  Similarity=0.130  Sum_probs=134.3

Q ss_pred             ccCcEEEEEECCCCCEEEEeeC---CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEE-eCCC--CEEEEEcC
Q 015490          166 NVGQQLALTFDSEGTIFAAGSE---NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSL-GNRG--PGRVWDLA  239 (406)
Q Consensus       166 ~~~~v~~~~~s~~g~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-s~d~--~i~iwd~~  239 (406)
                      +...+...+|||||+.|+..+.   +..|.+|++.+++... +......+..+.|+|||+.|+.. +.++  .|++||+.
T Consensus       197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~  275 (429)
T PRK03629        197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA  275 (429)
T ss_pred             CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence            4467889999999998887542   4579999998876432 22233345678999999988865 3344  48899998


Q ss_pred             CCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCC--cEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEE
Q 015490          240 SSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRG--ASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAV  317 (406)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~  317 (406)
                      +++.......  ...+....|+|+++.     ++.+...+  ..|+.+|+.+++. ..+...........|+|||++|+.
T Consensus       276 tg~~~~lt~~--~~~~~~~~wSPDG~~-----I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~  347 (429)
T PRK03629        276 SGQIRQVTDG--RSNNTEPTWFPDSQN-----LAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVM  347 (429)
T ss_pred             CCCEEEccCC--CCCcCceEECCCCCE-----EEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEE
Confidence            8766543332  234568899999985     32333333  3666778877654 334434445667899999999988


Q ss_pred             EeCC---CcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCc---EEEEEec
Q 015490          318 GTAS---GDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSS---VRVTVIE  373 (406)
Q Consensus       318 ~~~d---g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~---i~iw~~~  373 (406)
                      .+.+   ..|.+||+.+++... +...  .......|+|||++|+.++.++.   +.++++.
T Consensus       348 ~~~~~g~~~I~~~dl~~g~~~~-Lt~~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~  406 (429)
T PRK03629        348 VSSNGGQQHIAKQDLATGGVQV-LTDT--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD  406 (429)
T ss_pred             EEccCCCceEEEEECCCCCeEE-eCCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence            6653   358889998876443 3212  22346789999999999888765   6667764

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=1.8e-14  Score=133.87  Aligned_cols=209  Identities=20%  Similarity=0.200  Sum_probs=134.5

Q ss_pred             cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCC---CeEEEEeCCCcceEeeeeccC
Q 015490          133 QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSEN---GNLRVFKWPSLEIILNESEAH  209 (406)
Q Consensus       133 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~  209 (406)
                      .+..+||.++... ...+.           ...+...+.+.+|+|||+.|+..+.+   ..|++||+.+++... +....
T Consensus       173 ~~~~~L~~~D~dG-~~~~~-----------l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~  239 (427)
T PRK02889        173 GNRYQLQISDADG-QNAQS-----------ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFK  239 (427)
T ss_pred             CCccEEEEECCCC-CCceE-----------eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCC
Confidence            3456788877632 21111           12344678899999999999877643   469999998886543 33333


Q ss_pred             CceeEEEEccCCCEEEE-EeCCCCEEEEE--cCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCc--EEEE
Q 015490          210 ASVKDLSFSPDGKFLVS-LGNRGPGRVWD--LASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGA--SIVT  284 (406)
Q Consensus       210 ~~i~~~~~s~~~~~l~s-~s~d~~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~i~~  284 (406)
                      ..+...+|+|||+.|+. .+.++...||.  +.++. ...+..+ ........|+|+++.     ++.....++  .|+.
T Consensus       240 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~-~~~~~~~~wSpDG~~-----l~f~s~~~g~~~Iy~  312 (427)
T PRK02889        240 GSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQS-SGIDTEPFFSPDGRS-----IYFTSDRGGAPQIYR  312 (427)
T ss_pred             CCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCC-CCCCcCeEEcCCCCE-----EEEEecCCCCcEEEE
Confidence            45678999999998874 56777766665  44443 3444332 233456889999986     222333333  4555


Q ss_pred             EeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEE
Q 015490          285 WNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASG---DISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSA  361 (406)
Q Consensus       285 ~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~  361 (406)
                      +++.+++. ..+...........|+|||++|+..+.++   .|.+||+.+++......   ......+.|+|||++|+.+
T Consensus       313 ~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~---~~~~~~p~~spdg~~l~~~  388 (427)
T PRK02889        313 MPASGGAA-QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD---TTRDESPSFAPNGRYILYA  388 (427)
T ss_pred             EECCCCce-EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC---CCCccCceECCCCCEEEEE
Confidence            56555543 22222333345689999999999877654   59999998877543322   2234678999999998877


Q ss_pred             ECCC
Q 015490          362 SMDS  365 (406)
Q Consensus       362 s~dg  365 (406)
                      +.++
T Consensus       389 ~~~~  392 (427)
T PRK02889        389 TQQG  392 (427)
T ss_pred             EecC
Confidence            7554

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=2.1e-14  Score=133.86  Aligned_cols=197  Identities=21%  Similarity=0.210  Sum_probs=134.5

Q ss_pred             ccCcEEEEEECCCCCEEEEeeC---CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEE-EeCCC--CEEEEEcC
Q 015490          166 NVGQQLALTFDSEGTIFAAGSE---NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVS-LGNRG--PGRVWDLA  239 (406)
Q Consensus       166 ~~~~v~~~~~s~~g~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s-~s~d~--~i~iwd~~  239 (406)
                      +...+.+.+|+|||+.|+..+.   +..|++||+.+++... +........++.|+|||+.|+. .+.++  .|++||+.
T Consensus       202 ~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~  280 (433)
T PRK04922        202 SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLG  280 (433)
T ss_pred             CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECC
Confidence            4467889999999999988764   3469999998876542 3333344567899999997764 45555  59999998


Q ss_pred             CCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCC--cEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEE
Q 015490          240 SSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRG--ASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAV  317 (406)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~  317 (406)
                      +++... +..+ .......+|+|+++.     ++.+...+  ..|+++|+.+++.. .+..+......++|+|||++|+.
T Consensus       281 ~g~~~~-lt~~-~~~~~~~~~spDG~~-----l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~  352 (433)
T PRK04922        281 SRQLTR-LTNH-FGIDTEPTWAPDGKS-----IYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAM  352 (433)
T ss_pred             CCCeEE-CccC-CCCccceEECCCCCE-----EEEEECCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEE
Confidence            876543 3322 223457899999985     33333333  35888888776543 33333344557899999999988


Q ss_pred             EeCCC---cEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECC---CcEEEEEecC
Q 015490          318 GTASG---DISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMD---SSVRVTVIED  374 (406)
Q Consensus       318 ~~~dg---~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d---g~i~iw~~~~  374 (406)
                      .+.++   .|.+||+.+++.. .+.  +........|+|||++++..+.+   +.|.++++..
T Consensus       353 ~~~~~~~~~I~v~d~~~g~~~-~Lt--~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g  412 (433)
T PRK04922        353 VHGSGGQYRIAVMDLSTGSVR-TLT--PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG  412 (433)
T ss_pred             EECCCCceeEEEEECCCCCeE-ECC--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence            76533   5999999887755 332  33345577999999988776653   3577777754

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=1.6e-14  Score=128.46  Aligned_cols=266  Identities=10%  Similarity=0.130  Sum_probs=190.2

Q ss_pred             cCCCCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceec-----------------cceeeecc-------
Q 015490          111 TDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKI-----------------SEKVLSQL-------  164 (406)
Q Consensus       111 ~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~-------  164 (406)
                      +|+...+.|..+|||+|+++++  --.+++|++.....+..+.+....                 ....+...       
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy  128 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY  128 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence            5778889999999999998877  566777776544322222211100                 00000000       


Q ss_pred             --cccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCe
Q 015490          165 --ENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSA  242 (406)
Q Consensus       165 --~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~  242 (406)
                        .-+..-..++++.-..-|++++....|+-++++.|..+..+....+.++++..++-..+|++|+.+|.|..||.++..
T Consensus       129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks  208 (703)
T KOG2321|consen  129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS  208 (703)
T ss_pred             eeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence              001112334444333334455555679999999999988887777899999999999999999999999999998876


Q ss_pred             eeeecccC----------CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEee-ecCCCeEEEEEcCC
Q 015490          243 VATPLAKE----------NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQ-VVREPVSSFNVSAD  311 (406)
Q Consensus       243 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~i~~~~~sp~  311 (406)
                      .+..+...          ....++++.|+.+|-      -++.|...|.+.+||+++.+++..-. ....+|..+.|.+.
T Consensus       209 rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL------~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~  282 (703)
T KOG2321|consen  209 RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL------HVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT  282 (703)
T ss_pred             hheeeecccccCCCccccccCcceEEEecCCce------eEEeeccCCcEEEEEcccCCceeecccCCccceeeeccccc
Confidence            65554321          123488999999875      46788889999999999988765443 22468889999775


Q ss_pred             --CCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCchHHHHHH
Q 015490          312 --GKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLNLWIIIF  388 (406)
Q Consensus       312 --~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~  388 (406)
                        ++.+++ .....++|||-.+++....+.  ....++.+++-|++.+++++-.++.+..|-+..   ++..|-|+.++
T Consensus       283 ~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiE--pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~---LGPaPrWCSfL  355 (703)
T KOG2321|consen  283 DQQNKVVS-MDKRILKIWDECTGKPMASIE--PTSDLNDFCFVPGSGMFFTANESSKMHTYYIPS---LGPAPRWCSFL  355 (703)
T ss_pred             CCCceEEe-cchHHhhhcccccCCceeecc--ccCCcCceeeecCCceEEEecCCCcceeEEccc---cCCCchhhhHH
Confidence              344544 345678999999999998885  555699999999999999999999998888876   56688888554

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.67  E-value=3.2e-14  Score=132.02  Aligned_cols=234  Identities=17%  Similarity=0.132  Sum_probs=159.5

Q ss_pred             EEEEEecCCCCcc--ccceeEEecCCCCceEEEEccCCCe--EEEEe-cCCeEEEEEecccc-cceeecceeccceeeec
Q 015490           90 LLSHFDFASNSLS--DQPVAELRTDSDLPYRMAIHPHGDG--IICAL-QNSCRLFEWDEVEN-TEIRRLGVKISEKVLSQ  163 (406)
Q Consensus        90 ~~~~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~sp~~~~--l~~~~-~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~  163 (406)
                      .+..||.......  ...-.....|..+|+.+.|-.+..-  +++++ ||.+..|..+.... .+......  .......
T Consensus       266 qV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~--~~~~~~~  343 (555)
T KOG1587|consen  266 QVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLES--KKHKGQQ  343 (555)
T ss_pred             eEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccc--ccccccc
Confidence            5667776654442  2233345678999999999765443  66665 99988886654322 11111110  1111222


Q ss_pred             ccccCcEEEEEECC-CCCEEEEeeCCCeEEEEeCC---Ccc-----eEeeeeccCCceeEEEEccCCCEEEEEeCCCCEE
Q 015490          164 LENVGQQLALTFDS-EGTIFAAGSENGNLRVFKWP---SLE-----IILNESEAHASVKDLSFSPDGKFLVSLGNRGPGR  234 (406)
Q Consensus       164 ~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~vwd~~---~~~-----~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~  234 (406)
                      ......+++++|.+ +-..|++|+++|.|.--+-.   ...     .......|.+.|+++.++|=+..++..+.|-+++
T Consensus       344 ~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vr  423 (555)
T KOG1587|consen  344 SSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVR  423 (555)
T ss_pred             cccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeE
Confidence            33446789999988 45789999999998873322   211     1224455667999999999776555555599999


Q ss_pred             EEEcC-CCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc--eEEEEeeecCCCeEEEEEcCC
Q 015490          235 VWDLA-SSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW--KRIRTKQVVREPVSSFNVSAD  311 (406)
Q Consensus       235 iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~i~~~~~sp~  311 (406)
                      ||... ...++..+.. +...+++++|||....     +.++++.+|.|.+||+...  .++.+..........+.|+++
T Consensus       424 iWs~~~~~~Pl~~~~~-~~~~v~~vaWSptrpa-----vF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~  497 (555)
T KOG1587|consen  424 IWSEDVIASPLLSLDS-SPDYVTDVAWSPTRPA-----VFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPN  497 (555)
T ss_pred             eccccCCCCcchhhhh-ccceeeeeEEcCcCce-----EEEEEcCCCceehhhhhccccCCcccccccccccceeecCCC
Confidence            99987 5555555543 3345899999999885     6677789999999998643  345555445566778889999


Q ss_pred             CCEEEEEeCCCcEEEEECCC
Q 015490          312 GKLLAVGTASGDISIIDSSS  331 (406)
Q Consensus       312 ~~~l~~~~~dg~i~i~d~~~  331 (406)
                      |+.|++|...|++++|++..
T Consensus       498 g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  498 GKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             CcEEEEecCCCcEEEEEcCc
Confidence            99999999999999999963

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=2.1e-15  Score=133.37  Aligned_cols=218  Identities=16%  Similarity=0.192  Sum_probs=154.8

Q ss_pred             ceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECC--CCCEE
Q 015490          105 PVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDS--EGTIF  182 (406)
Q Consensus       105 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l  182 (406)
                      ...++.||++.|.|++|+.+|.+|++|+|.. ++..|+.-..+....+..          .|...|.++.|-|  +.+++
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~-r~ivWd~~~~KllhsI~T----------gHtaNIFsvKFvP~tnnriv  110 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDT-RLIVWDPFEYKLLHSIST----------GHTANIFSVKFVPYTNNRIV  110 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcc-eEEeecchhcceeeeeec----------ccccceeEEeeeccCCCeEE
Confidence            4457899999999999999999999997443 555566554444333322          2558899999999  45789


Q ss_pred             EEeeCCCeEEEEeCCCc----------ceEeeeeccCCceeEEEEccCC-CEEEEEeCCCCEEEEEcCCCeeee------
Q 015490          183 AAGSENGNLRVFKWPSL----------EIILNESEAHASVKDLSFSPDG-KFLVSLGNRGPGRVWDLASSAVAT------  245 (406)
Q Consensus       183 ~~~~~dg~i~vwd~~~~----------~~~~~~~~~~~~i~~~~~s~~~-~~l~s~s~d~~i~iwd~~~~~~~~------  245 (406)
                      ++|+.|..|++||+...          +....+..|...|..++-.|++ ..+.+++.||+|+-+|++......      
T Consensus       111 ~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~  190 (758)
T KOG1310|consen  111 LSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCP  190 (758)
T ss_pred             EeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccccc
Confidence            99999999999999742          2333445566688889999988 789999999999999998632211      


Q ss_pred             -eccc--CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc--------e----------EEEEee-ec----
Q 015490          246 -PLAK--ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW--------K----------RIRTKQ-VV----  299 (406)
Q Consensus       246 -~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~--------~----------~~~~~~-~~----  299 (406)
                       .+..  ..--...++..+|...+     +++.|+.+...++||.+..        +          ++.-+. +|    
T Consensus       191 ~~l~ny~~~lielk~ltisp~rp~-----~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~  265 (758)
T KOG1310|consen  191 SILVNYNPQLIELKCLTISPSRPY-----YLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNS  265 (758)
T ss_pred             HHHHHhchhhheeeeeeecCCCCc-----eEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCc
Confidence             1110  11123568999999986     6788889999999995421        1          111111 11    


Q ss_pred             C-------CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEe
Q 015490          300 R-------EPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAV  338 (406)
Q Consensus       300 ~-------~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~  338 (406)
                      .       ..++-+.|+|+|.-|++.-..-.|+++|+..++....+
T Consensus       266 ~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  266 QGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY  311 (758)
T ss_pred             ccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence            0       12566789999988887766678999999877655444

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.66  E-value=4.1e-14  Score=134.28  Aligned_cols=255  Identities=16%  Similarity=0.153  Sum_probs=168.6

Q ss_pred             CCCceEEEEccCC--CeEEEEe-cCCeEEEEEecccccceeecceeccceeee-ccccc-CcEEEEEECCCCCEEEEeeC
Q 015490          113 SDLPYRMAIHPHG--DGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLS-QLENV-GQQLALTFDSEGTIFAAGSE  187 (406)
Q Consensus       113 ~~~v~~~~~sp~~--~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~v~~~~~s~~g~~l~~~~~  187 (406)
                      ...|+.+.+-.+.  ..+++++ ||.++||.=-....+....+..   -..+. ..... +.-.-+.|.....+|++++.
T Consensus      1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTa---w~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd 1185 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTA---WSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD 1185 (1387)
T ss_pred             CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEe---eccccccCccCCCCCeeeehhhhCCeEEecCC
Confidence            3567888875533  3555555 9999998633221111111100   00000 01111 11144678876666666666


Q ss_pred             CCeEEEEeCCCcceEeeeeccCC-ceeEEEEcc-CCCEEEEEeCCCCEEEEEcCCCee---eeecccCCcc-eEEEEEEE
Q 015490          188 NGNLRVFKWPSLEIILNESEAHA-SVKDLSFSP-DGKFLVSLGNRGPGRVWDLASSAV---ATPLAKENDE-LFASCRFS  261 (406)
Q Consensus       188 dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~-~~~~l~s~s~d~~i~iwd~~~~~~---~~~~~~~~~~-~~~~~~~~  261 (406)
                      -..|+|||.........+..... .|+++.-+- .|+.+++|..||.+++||.+....   +.....|... .|..+.+.
T Consensus      1186 ~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq 1265 (1387)
T KOG1517|consen 1186 VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQ 1265 (1387)
T ss_pred             eeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEee
Confidence            78999999998888777765544 677766533 478999999999999999886543   2333333221 27788888


Q ss_pred             cCCCCceEEEEEEEcCCCcEEEEEeCCCceEEE--Eeeec---CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEE
Q 015490          262 PLNNEDYVLYIAAITDRGASIVTWNTTTWKRIR--TKQVV---REPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRT  336 (406)
Q Consensus       262 ~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~--~~~~~---~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~  336 (406)
                      +.|-.     -+++++.+|.|++||++......  +...|   ++..+++..++....+|+|+. +.|.||++.. +.+.
T Consensus      1266 ~~G~~-----elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~ 1338 (1387)
T KOG1517|consen 1266 RQGLG-----ELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLN 1338 (1387)
T ss_pred             cCCCc-----ceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhc
Confidence            87753     35778899999999999842222  22222   235899999999999999998 9999999863 3333


Q ss_pred             Eee------cccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490          337 AVK------KAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       337 ~~~------~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      .+.      ....+.+.+++|+|.--++++|+.|.+|.||....+..
T Consensus      1339 ~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1339 IIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPRL 1385 (1387)
T ss_pred             ccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcCC
Confidence            332      12235678999999988899999999999999876643

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.65  E-value=5.2e-15  Score=131.33  Aligned_cols=228  Identities=11%  Similarity=0.113  Sum_probs=158.5

Q ss_pred             CccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccc-cCcEEEEEECC
Q 015490          100 SLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLEN-VGQQLALTFDS  177 (406)
Q Consensus       100 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~  177 (406)
                      ....+++.++++|.++|.|++..+++..+++|+ |++++.|++... ........   .......+.+ .+.++.+++|+
T Consensus       331 ~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n-~dp~ds~d---p~vl~~~l~Ghtdavw~l~~s~  406 (577)
T KOG0642|consen  331 EKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPN-QDPDDSYD---PSVLSGTLLGHTDAVWLLALSS  406 (577)
T ss_pred             ccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCC-CCcccccC---cchhccceeccccceeeeeecc
Confidence            444579999999999999999999999999998 999999976522 11100000   1112223334 47889999999


Q ss_pred             CCCEEEEeeCCCeEEEEeCCCcceEeeeec--cCCceeEEEEccCC-CEEEEEeCCCCEEEEEcCCCeeeeecccC----
Q 015490          178 EGTIFAAGSENGNLRVFKWPSLEIILNESE--AHASVKDLSFSPDG-KFLVSLGNRGPGRVWDLASSAVATPLAKE----  250 (406)
Q Consensus       178 ~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~i~~~~~s~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~----  250 (406)
                      ....|++++.||+++.|+...... ..+..  .++--.++.+-... .+.++...-+.-.++++........+...    
T Consensus       407 ~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~  485 (577)
T KOG0642|consen  407 TKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPG  485 (577)
T ss_pred             cccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCc
Confidence            988999999999999999765544 22222  22233455553222 12222222333334444444333333211    


Q ss_pred             --CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 015490          251 --NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIID  328 (406)
Q Consensus       251 --~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d  328 (406)
                        ....+..+.++|...      +..++..++.|+++|..+++.+.....|...++++++.|+|-+|++++.|+.+++|.
T Consensus       486 ~~~~~~in~vVs~~~~~------~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~k  559 (577)
T KOG0642|consen  486 PRRYPQINKVVSHPTAD------ITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWK  559 (577)
T ss_pred             ccccCccceEEecCCCC------eeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhh
Confidence              112355677888876      566778999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEEe
Q 015490          329 SSSLQVRTAV  338 (406)
Q Consensus       329 ~~~~~~~~~~  338 (406)
                      +....++...
T Consensus       560 ld~k~~~~es  569 (577)
T KOG0642|consen  560 LDVKTCVLES  569 (577)
T ss_pred             ccchheeecc
Confidence            9776665554

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=4.2e-13  Score=124.24  Aligned_cols=242  Identities=16%  Similarity=0.155  Sum_probs=147.8

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEE---EEe-cCCeEEEEEecccccceeecceeccceeeeccc
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGII---CAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE  165 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~---~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (406)
                      .++..+.+..     ..+.+..+.....+-+|+|||+.++   ++. ++.-.||..+...++...          +..  
T Consensus       166 ~l~~~d~dG~-----~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----------lt~--  228 (428)
T PRK01029        166 ELWSVDYDGQ-----NLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----------ILA--  228 (428)
T ss_pred             eEEEEcCCCC-----CceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----------eec--
Confidence            5666665542     2234444566677889999998632   333 566789988876543221          111  


Q ss_pred             ccCcEEEEEECCCCCEEEEeeC-----CCeEEEEeCCCc--ceEeeeeccC-CceeEEEEccCCCEEEEEe-CCCCEEEE
Q 015490          166 NVGQQLALTFDSEGTIFAAGSE-----NGNLRVFKWPSL--EIILNESEAH-ASVKDLSFSPDGKFLVSLG-NRGPGRVW  236 (406)
Q Consensus       166 ~~~~v~~~~~s~~g~~l~~~~~-----dg~i~vwd~~~~--~~~~~~~~~~-~~i~~~~~s~~~~~l~s~s-~d~~i~iw  236 (406)
                      ..+.....+|||||+.|+..+.     +..+..|++..+  .....+.... ......+|+|||+.|+..+ .++...+|
T Consensus       229 ~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly  308 (428)
T PRK01029        229 LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIY  308 (428)
T ss_pred             CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEE
Confidence            2233456799999988886543     223444676653  1222333222 3446789999999888776 45655555


Q ss_pred             --EcCC-CeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCC
Q 015490          237 --DLAS-SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGK  313 (406)
Q Consensus       237 --d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~  313 (406)
                        ++.. +.....+... ...+....|+|+++.   ++++........|++||+.+++... +......+....|+|||+
T Consensus       309 ~~~~~~~g~~~~~lt~~-~~~~~~p~wSPDG~~---Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~  383 (428)
T PRK01029        309 IMQIDPEGQSPRLLTKK-YRNSSCPAWSPDGKK---IAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSL  383 (428)
T ss_pred             EEECcccccceEEeccC-CCCccceeECCCCCE---EEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCC
Confidence              4432 2223333322 234557899999985   2222222234689999999876543 333334567899999999


Q ss_pred             EEEEEeC---CCcEEEEECCCceEEEEeecccccceEEEEEcCCC
Q 015490          314 LLAVGTA---SGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDS  355 (406)
Q Consensus       314 ~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~  355 (406)
                      +|+....   ...|+++|+.+++......  ..+.+...+|+|-.
T Consensus       384 ~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~--~~g~~~~p~Ws~~~  426 (428)
T PRK01029        384 HLVYSAGNSNESELYLISLITKKTRKIVI--GSGEKRFPSWGAFP  426 (428)
T ss_pred             EEEEEECCCCCceEEEEECCCCCEEEeec--CCCcccCceecCCC
Confidence            8886543   3568899998776554442  44567788898753

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=5.3e-13  Score=124.90  Aligned_cols=238  Identities=16%  Similarity=0.149  Sum_probs=151.4

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeeccccc
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV  167 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (406)
                      .++.++.+..     ....+..+...+...+|+|||+.|+..+  ++...||.++..+++...          +..  ..
T Consensus       180 ~l~~~d~~g~-----~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----------l~~--~~  242 (430)
T PRK00178        180 TLQRSDYDGA-----RAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----------ITN--FE  242 (430)
T ss_pred             EEEEECCCCC-----CceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----------ccC--CC
Confidence            5666666542     3445666778899999999999998776  344578888876543211          111  12


Q ss_pred             CcEEEEEECCCCCEEEE-eeCCC--eEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeC-CC--CEEEEEcCCC
Q 015490          168 GQQLALTFDSEGTIFAA-GSENG--NLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGN-RG--PGRVWDLASS  241 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~-~~~dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~-d~--~i~iwd~~~~  241 (406)
                      +.+....|+|||+.|+. .+.+|  .|++||+.+++.. .+..+........|+|||+.|+..+. ++  .|+++|+.++
T Consensus       243 g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g  321 (430)
T PRK00178        243 GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG  321 (430)
T ss_pred             CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            33456899999988874 44444  6888899887654 34444445677899999998877664 33  5777788777


Q ss_pred             eeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCC
Q 015490          242 AVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAS  321 (406)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d  321 (406)
                      +.......  ........|+|+++.   +++.........|.++|+.+++. ..+... .......|+|||+.++..+.+
T Consensus       322 ~~~~lt~~--~~~~~~~~~Spdg~~---i~~~~~~~~~~~l~~~dl~tg~~-~~lt~~-~~~~~p~~spdg~~i~~~~~~  394 (430)
T PRK00178        322 RAERVTFV--GNYNARPRLSADGKT---LVMVHRQDGNFHVAAQDLQRGSV-RILTDT-SLDESPSVAPNGTMLIYATRQ  394 (430)
T ss_pred             CEEEeecC--CCCccceEECCCCCE---EEEEEccCCceEEEEEECCCCCE-EEccCC-CCCCCceECCCCCEEEEEEec
Confidence            64332211  122335789999985   22222222234688999988764 333322 223467899999999887653


Q ss_pred             ---CcEEEEECCCceEEEEeecccccceEEEEEcCC
Q 015490          322 ---GDISIIDSSSLQVRTAVKKAHLGIVTALAFSYD  354 (406)
Q Consensus       322 ---g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~  354 (406)
                         ..+.++++.. .....+. .+.+.+...+|+|-
T Consensus       395 ~g~~~l~~~~~~g-~~~~~l~-~~~g~~~~p~ws~~  428 (430)
T PRK00178        395 QGRGVLMLVSING-RVRLPLP-TAQGEVREPSWSPY  428 (430)
T ss_pred             CCceEEEEEECCC-CceEECc-CCCCCcCCCccCCC
Confidence               3477777753 3344443 45566777888873

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=2.3e-13  Score=127.13  Aligned_cols=157  Identities=17%  Similarity=0.174  Sum_probs=116.4

Q ss_pred             ceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEe
Q 015490          116 PYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFK  195 (406)
Q Consensus       116 v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd  195 (406)
                      ..++.+++.|.+....-...+.+|.....+ +..        ...-....|.-.++|.++||+++++|+|..||.|.+|.
T Consensus       163 ~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~-~~~--------~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~  233 (792)
T KOG1963|consen  163 PKSIVDNNSGEFKGIVHMCKIHIYFVPKHT-KHT--------SSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWR  233 (792)
T ss_pred             CccEEEcCCceEEEEEEeeeEEEEEecccc-eee--------ccchhhhhhcccceeEEeccccceEEEeccCCcEEEEe
Confidence            578899999988877776666776665432 110        00111223344589999999999999999999999997


Q ss_pred             CCC--c--ceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEE
Q 015490          196 WPS--L--EIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY  271 (406)
Q Consensus       196 ~~~--~--~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  271 (406)
                      --.  +  .....+.=|+..|.+++|+++|.+|++|+.++.+.+|.+.+++  +++...-+.++..+.++|++..    +
T Consensus       234 d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~----~  307 (792)
T KOG1963|consen  234 DFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDL----Y  307 (792)
T ss_pred             ccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCe----E
Confidence            422  1  2334455678899999999999999999999999999999988  5555556778999999999984    2


Q ss_pred             EEEEcCCCcEEEEEeCCC
Q 015490          272 IAAITDRGASIVTWNTTT  289 (406)
Q Consensus       272 ~~~~~~~~~~i~~~d~~~  289 (406)
                        +....|..|.+....+
T Consensus       308 --sl~~~DNqI~li~~~d  323 (792)
T KOG1963|consen  308 --SLVLEDNQIHLIKASD  323 (792)
T ss_pred             --EEEecCceEEEEeccc
Confidence              2234588888887654

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.62  E-value=3.4e-14  Score=125.54  Aligned_cols=176  Identities=18%  Similarity=0.282  Sum_probs=127.2

Q ss_pred             CCCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeeccee--------------cc-ceeeecccccCcEEEEEE
Q 015490          113 SDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVK--------------IS-EKVLSQLENVGQQLALTF  175 (406)
Q Consensus       113 ~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~--------------~~-~~~~~~~~~~~~v~~~~~  175 (406)
                      ...|+|+.|-|.++.++...  ++.+.+|+.....+.........              .. ....+..-..+.|+..+|
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F  298 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF  298 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence            37899999999777655554  77666665433222111111000              00 111112223467889999


Q ss_pred             CCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceE
Q 015490          176 DSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELF  255 (406)
Q Consensus       176 s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~  255 (406)
                      +|||++||+.+.||.++|||+.+.+.+.....--+...|++|||||++|++|++|.-|.||.+..++.+..=.+ |...|
T Consensus       299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqG-HkSWV  377 (636)
T KOG2394|consen  299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQG-HKSWV  377 (636)
T ss_pred             cCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccc-cccce
Confidence            99999999999999999999999887766666667899999999999999999999999999998888877654 45678


Q ss_pred             EEEEEEcCC-------------------------------CCce-----------EEEEEEEcCCCcEEEEEeCCC
Q 015490          256 ASCRFSPLN-------------------------------NEDY-----------VLYIAAITDRGASIVTWNTTT  289 (406)
Q Consensus       256 ~~~~~~~~~-------------------------------~~~~-----------~l~~~~~~~~~~~i~~~d~~~  289 (406)
                      ..++|.|..                               ....           +.|-+.+.+.|..+.+||+..
T Consensus       378 s~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlte  453 (636)
T KOG2394|consen  378 SVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTE  453 (636)
T ss_pred             eeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecch
Confidence            888887421                               1111           556677888999999999864

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=6.7e-14  Score=117.98  Aligned_cols=197  Identities=16%  Similarity=0.137  Sum_probs=141.9

Q ss_pred             CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeecc-CCceeEEEEccCCC-EEEEEeCCCCEEEEEcCCC----
Q 015490          168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEA-HASVKDLSFSPDGK-FLVSLGNRGPGRVWDLASS----  241 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~i~~~~~s~~~~-~l~s~s~d~~i~iwd~~~~----  241 (406)
                      ..+..++|++.-..+|++..|..|++|+-.. ++...+... ...|++++|-|.+. .|+.++ .+.|.+|.....    
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgC-r~gIciW~~s~tln~~  176 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLNAN  176 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeee-cceeEEEEcCcccccc
Confidence            4577899999777788999999999999765 444444433 33899999999755 455555 456999976421    


Q ss_pred             e--------eeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCC
Q 015490          242 A--------VATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGK  313 (406)
Q Consensus       242 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~  313 (406)
                      +        ....+.......|+++.|.+++..     ++.+.-.+..|.+||..++..+.-.....+.++-+.|||||.
T Consensus       177 r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~-----l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd  251 (445)
T KOG2139|consen  177 RNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTI-----LVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGD  251 (445)
T ss_pred             cccccccccchhheeCCCCceeeEEEEcCCCCE-----EeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCC
Confidence            1        112233334467999999999985     455556789999999999876655544457788999999999


Q ss_pred             EEEEEeCCCcEEEEECC-CceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490          314 LLAVGTASGDISIIDSS-SLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIED  374 (406)
Q Consensus       314 ~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~  374 (406)
                      +|++++-|+..++|+.. +....+-.  -..+.|...+|+|+|++|+-... |.-++|.+.-
T Consensus       252 ~lfaAt~davfrlw~e~q~wt~erw~--lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f  310 (445)
T KOG2139|consen  252 VLFAATCDAVFRLWQENQSWTKERWI--LGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTF  310 (445)
T ss_pred             EEEEecccceeeeehhcccceeccee--ccCCceeeeeecCCCCEEEEEEc-CCceEEEEee
Confidence            99999999999999554 33333333  24558999999999998765443 3345666643

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.62  E-value=1.5e-13  Score=112.79  Aligned_cols=158  Identities=15%  Similarity=0.222  Sum_probs=111.5

Q ss_pred             EEEEECCCCCEEEEeeC----------CCeEEEEeCCCc-ceEeeeec-cCCceeEEEEccCCCEEEEEe--CCCCEEEE
Q 015490          171 LALTFDSEGTIFAAGSE----------NGNLRVFKWPSL-EIILNESE-AHASVKDLSFSPDGKFLVSLG--NRGPGRVW  236 (406)
Q Consensus       171 ~~~~~s~~g~~l~~~~~----------dg~i~vwd~~~~-~~~~~~~~-~~~~i~~~~~s~~~~~l~s~s--~d~~i~iw  236 (406)
                      ..+.|+++|.+|++-..          -+...+|.++.. .....+.- ..++|.+++|+|+|+.|++..  .++.+.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            35789999987765433          134555655322 23333322 334799999999999876653  56799999


Q ss_pred             EcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEE
Q 015490          237 DLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLA  316 (406)
Q Consensus       237 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~  316 (406)
                      |++ ++.+..+..   .....+.|+|+|+.   +++...+...|.|.+||.++.+.+.....  ..++.++|+|||++++
T Consensus        89 d~~-~~~i~~~~~---~~~n~i~wsP~G~~---l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~~~  159 (194)
T PF08662_consen   89 DVK-GKKIFSFGT---QPRNTISWSPDGRF---LVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRYLA  159 (194)
T ss_pred             cCc-ccEeEeecC---CCceEEEECCCCCE---EEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCEEE
Confidence            996 666666642   34568999999995   32333345568999999999888877653  3478999999999999


Q ss_pred             EEeC------CCcEEEEECCCceEEEEe
Q 015490          317 VGTA------SGDISIIDSSSLQVRTAV  338 (406)
Q Consensus       317 ~~~~------dg~i~i~d~~~~~~~~~~  338 (406)
                      ++..      |+.++||+.. |+.+...
T Consensus       160 ta~t~~r~~~dng~~Iw~~~-G~~l~~~  186 (194)
T PF08662_consen  160 TATTSPRLRVDNGFKIWSFQ-GRLLYKK  186 (194)
T ss_pred             EEEeccceeccccEEEEEec-CeEeEec
Confidence            9874      6789999985 6655544

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=6.8e-15  Score=130.20  Aligned_cols=206  Identities=16%  Similarity=0.177  Sum_probs=147.1

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeee-ccCCceeEEEEcc--CCCEEEEEeCCCCEEEEEcCCCe
Q 015490          166 NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNES-EAHASVKDLSFSP--DGKFLVSLGNRGPGRVWDLASSA  242 (406)
Q Consensus       166 ~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~i~~~~~s~--~~~~l~s~s~d~~i~iwd~~~~~  242 (406)
                      |.+.|+|+.|+.+|.+|++|+.|-.+.|||.-..+.+..+. +|...|.++.|-|  +.+.+++|..|..|+++|+...+
T Consensus        49 H~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~  128 (758)
T KOG1310|consen   49 HTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSK  128 (758)
T ss_pred             ccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccccc
Confidence            44889999999999999999999999999998777666654 5556999999988  45689999999999999997522


Q ss_pred             ----------eeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEE-E---------EeeecCCC
Q 015490          243 ----------VATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRI-R---------TKQVVREP  302 (406)
Q Consensus       243 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~-~---------~~~~~~~~  302 (406)
                                ....+. -+...+..++-.|++.+     ++-++++||+|+-+|++....- .         .+...--.
T Consensus       129 ~~~~d~~~~~~~~~~~-cht~rVKria~~p~~Ph-----tfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie  202 (758)
T KOG1310|consen  129 EGGMDHGMEETTRCWS-CHTDRVKRIATAPNGPH-----TFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE  202 (758)
T ss_pred             ccccccCccchhhhhh-hhhhhhhheecCCCCCc-----eEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence                      111222 23445777888899876     4456689999999999863211 0         01111124


Q ss_pred             eEEEEEcC-CCCEEEEEeCCCcEEEEECCC--------ce----------EEEEeecccc-----------cceEEEEEc
Q 015490          303 VSSFNVSA-DGKLLAVGTASGDISIIDSSS--------LQ----------VRTAVKKAHL-----------GIVTALAFS  352 (406)
Q Consensus       303 i~~~~~sp-~~~~l~~~~~dg~i~i~d~~~--------~~----------~~~~~~~~~~-----------~~v~~~~~s  352 (406)
                      ..++..+| +..+|++|+.|-..++||.+.        +.          ++..+..+|.           ..++-+.|+
T Consensus       203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn  282 (758)
T KOG1310|consen  203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN  282 (758)
T ss_pred             eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC
Confidence            57888999 456899999999999999431        11          1222222332           125677899


Q ss_pred             CCCCeEEEEECCCcEEEEEecCCcC
Q 015490          353 YDSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       353 p~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      |+|.-|+..-..-.|+++|+..++.
T Consensus       283 pNGtElLvs~~gEhVYlfdvn~~~~  307 (758)
T KOG1310|consen  283 PNGTELLVSWGGEHVYLFDVNEDKS  307 (758)
T ss_pred             CCCcEEEEeeCCeEEEEEeecCCCC
Confidence            9997766554445799999988765

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=8e-13  Score=123.35  Aligned_cols=225  Identities=19%  Similarity=0.182  Sum_probs=144.2

Q ss_pred             eEEecCCCCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEE
Q 015490          107 AELRTDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAA  184 (406)
Q Consensus       107 ~~~~~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  184 (406)
                      +.+..+...+.+..|+|||+.|+...  ++...||.++..+++...          +..+  .+.....+|+|||+.|+.
T Consensus       211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----------lt~~--~g~~~~~~wSPDG~~La~  278 (448)
T PRK04792        211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----------VTSF--PGINGAPRFSPDGKKLAL  278 (448)
T ss_pred             eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----------ecCC--CCCcCCeeECCCCCEEEE
Confidence            34556677889999999999998775  456688888876543211          1111  122346799999997765


Q ss_pred             -eeCCCe--EEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeC-CC--CEEEEEcCCCeeeeecccCCcceEEEE
Q 015490          185 -GSENGN--LRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGN-RG--PGRVWDLASSAVATPLAKENDELFASC  258 (406)
Q Consensus       185 -~~~dg~--i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~  258 (406)
                       .+.+|.  |+++|+.+++.. .+..+.......+|+|||+.|+..+. ++  .|+++|+.+++...... . .......
T Consensus       279 ~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~-~-g~~~~~~  355 (448)
T PRK04792        279 VLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF-E-GEQNLGG  355 (448)
T ss_pred             EEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec-C-CCCCcCe
Confidence             455664  888888877644 34444445678899999998877664 33  46677887776443221 1 1122357


Q ss_pred             EEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCC-C--cEEEEECCCceEE
Q 015490          259 RFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAS-G--DISIIDSSSLQVR  335 (406)
Q Consensus       259 ~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-g--~i~i~d~~~~~~~  335 (406)
                      +|+|+++.   +++.........|.++|+.+++.. .+... .......|+|||+.|+..+.+ +  .+++++. ++...
T Consensus       356 ~~SpDG~~---l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~  429 (448)
T PRK04792        356 SITPDGRS---MIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFK  429 (448)
T ss_pred             eECCCCCE---EEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCce
Confidence            89999985   322222223346777898887643 23222 122356899999988876653 3  3777787 45555


Q ss_pred             EEeecccccceEEEEEcC
Q 015490          336 TAVKKAHLGIVTALAFSY  353 (406)
Q Consensus       336 ~~~~~~~~~~v~~~~~sp  353 (406)
                      ..+. .+.+.+...+|+|
T Consensus       430 ~~l~-~~~g~~~~p~Wsp  446 (448)
T PRK04792        430 ARLP-AGQGEVKSPAWSP  446 (448)
T ss_pred             EECc-CCCCCcCCCccCC
Confidence            5554 4566678888887

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.62  E-value=2.6e-13  Score=130.83  Aligned_cols=263  Identities=14%  Similarity=0.135  Sum_probs=182.1

Q ss_pred             ccceeEEecCCCCceEEEEccCC-CeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCC
Q 015490          103 DQPVAELRTDSDLPYRMAIHPHG-DGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEG  179 (406)
Q Consensus       103 ~~~~~~~~~h~~~v~~~~~sp~~-~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g  179 (406)
                      ...+..+..|...|..++.++.. .++++|+ ||++++|+.....++..       ..+...++. ....+.++...+.+
T Consensus      1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~-------s~rS~ltys~~~sr~~~vt~~~~~ 1110 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGG-------SARSELTYSPEGSRVEKVTMCGNG 1110 (1431)
T ss_pred             ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcc-------eeeeeEEEeccCCceEEEEeccCC
Confidence            35677888999999999988766 8888887 99999998765443311       122222333 45788999999999


Q ss_pred             CEEEEeeCCCeEEEEeCCCc--c-----eEeeeeccC-Cc-eeEEEEcc-CCC-EEEEEeCCCCEEEEEcCCCeeeeecc
Q 015490          180 TIFAAGSENGNLRVFKWPSL--E-----IILNESEAH-AS-VKDLSFSP-DGK-FLVSLGNRGPGRVWDLASSAVATPLA  248 (406)
Q Consensus       180 ~~l~~~~~dg~i~vwd~~~~--~-----~~~~~~~~~-~~-i~~~~~s~-~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~  248 (406)
                      ..+|+++.||.|++.+++..  .     +......+. +. |..-++.. ++. .++.+..-+.|..||++.......++
T Consensus      1111 ~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk 1190 (1431)
T KOG1240|consen 1111 DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLK 1190 (1431)
T ss_pred             CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhh
Confidence            99999999999999998652  1     111111111 22 33333432 233 78888889999999998876655554


Q ss_pred             c-CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeee-cCCCeEEEEEcCC---CCEEEEEeC--C
Q 015490          249 K-ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQV-VREPVSSFNVSAD---GKLLAVGTA--S  321 (406)
Q Consensus       249 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~i~~~~~sp~---~~~l~~~~~--d  321 (406)
                      . ...+.+++++.+|.+.      +++.|...|.+.+||++-+.++..... +..++..+..+|-   ....++++.  .
T Consensus      1191 ~~~~hG~vTSi~idp~~~------WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ 1264 (1431)
T KOG1240|consen 1191 NQLRHGLVTSIVIDPWCN------WLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSN 1264 (1431)
T ss_pred             cCccccceeEEEecCCce------EEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCC
Confidence            3 2345689999999987      567788899999999998887776643 3467788887763   345555444  6


Q ss_pred             CcEEEEECCCceEEEEeecc------------------cccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCC
Q 015490          322 GDISIIDSSSLQVRTAVKKA------------------HLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKS  378 (406)
Q Consensus       322 g~i~i~d~~~~~~~~~~~~~------------------~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~  378 (406)
                      +.|.+|++.++.....+...                  +.-......+..-+..+.+|+.|..|+.||...++..
T Consensus      1265 nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1265 NEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred             CceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence            78999999988766655422                  0111122233333567899999999999999887765

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.61  E-value=2.4e-11  Score=109.85  Aligned_cols=274  Identities=16%  Similarity=0.201  Sum_probs=166.7

Q ss_pred             CCCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe--cCCeEEEEEec
Q 015490           66 IRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDE  143 (406)
Q Consensus        66 ~~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~  143 (406)
                      .++++.++++...+    .....+..+.++.+...+  ..+.+..........++++|++++|+++.  ++.+.++.++.
T Consensus        45 ~~~~~~LY~~~e~~----~~~g~v~~~~i~~~~g~L--~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~  118 (345)
T PF10282_consen   45 SPDGRRLYVVNEGS----GDSGGVSSYRIDPDTGTL--TLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDD  118 (345)
T ss_dssp             -TTSSEEEEEETTS----STTTEEEEEEEETTTTEE--EEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             EeCCCEEEEEEccc----cCCCCEEEEEECCCccee--EEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccC
Confidence            34667777664432    123466777777764333  34445544556778999999999999986  67777777665


Q ss_pred             ccccceeecc-eeccceeee-cccccCcEEEEEECCCCCEEEEeeC-CCeEEEEeCCCcc--eE--eeee-ccCCceeEE
Q 015490          144 VENTEIRRLG-VKISEKVLS-QLENVGQQLALTFDSEGTIFAAGSE-NGNLRVFKWPSLE--II--LNES-EAHASVKDL  215 (406)
Q Consensus       144 ~~~~~~~~~~-~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~vwd~~~~~--~~--~~~~-~~~~~i~~~  215 (406)
                      . +....... ......-.. .-+......++.|+|||+++++... ...|.+|+++...  ..  ..+. ......+.+
T Consensus       119 ~-g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~  197 (345)
T PF10282_consen  119 D-GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHL  197 (345)
T ss_dssp             T-SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEE
T ss_pred             C-cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEE
Confidence            3 22111110 000000000 0112356789999999998887633 4589999997654  21  1222 223368999


Q ss_pred             EEccCCCEEEEEe-CCCCEEEEEcC--CCee--eeecc---c--CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEE
Q 015490          216 SFSPDGKFLVSLG-NRGPGRVWDLA--SSAV--ATPLA---K--ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTW  285 (406)
Q Consensus       216 ~~s~~~~~l~s~s-~d~~i~iwd~~--~~~~--~~~~~---~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~  285 (406)
                      +|+|+++++++.. .++.|.++++.  ++..  ...+.   .  ........++++|+++.     +.++......|.+|
T Consensus       198 ~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~-----lyvsnr~~~sI~vf  272 (345)
T PF10282_consen  198 AFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRF-----LYVSNRGSNSISVF  272 (345)
T ss_dssp             EE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSE-----EEEEECTTTEEEEE
T ss_pred             EEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCE-----EEEEeccCCEEEEE
Confidence            9999999887765 46789999987  4432  12111   1  11124678999999995     55666778899999


Q ss_pred             eCC--Cc--eEEEEeeecCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEC--CCceEEEEeecccccceEEEEE
Q 015490          286 NTT--TW--KRIRTKQVVREPVSSFNVSADGKLLAVGTA-SGDISIIDS--SSLQVRTAVKKAHLGIVTALAF  351 (406)
Q Consensus       286 d~~--~~--~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~i~i~d~--~~~~~~~~~~~~~~~~v~~~~~  351 (406)
                      ++.  ++  +.+..+.........+.++|+|++|+++.. ++.|.+|++  .++.....-....-....|+.|
T Consensus       273 ~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  273 DLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             EECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred             EEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence            983  23  344455544455799999999999998876 678998866  5666554432223344566665

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.61  E-value=9.3e-16  Score=141.74  Aligned_cols=205  Identities=15%  Similarity=0.192  Sum_probs=158.5

Q ss_pred             ccccc-CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCC
Q 015490          163 QLENV-GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASS  241 (406)
Q Consensus       163 ~~~~~-~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~  241 (406)
                      .+.+| ..|.|+.|...|.++++|+.|..++||.++++.+.....+|.+.|++++.+.+..++++++.|..|++|-+..+
T Consensus       185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~  264 (1113)
T KOG0644|consen  185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG  264 (1113)
T ss_pred             HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC
Confidence            33344 78999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceE--------------EEEeee---------
Q 015490          242 AVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKR--------------IRTKQV---------  298 (406)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~--------------~~~~~~---------  298 (406)
                      .++..+.+|. +.|++++|+|..          +.+.||++++||.+-.-.              +..+..         
T Consensus       265 ~pvsvLrght-gavtaiafsP~~----------sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T  333 (1113)
T KOG0644|consen  265 APVSVLRGHT-GAVTAIAFSPRA----------SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLT  333 (1113)
T ss_pred             chHHHHhccc-cceeeeccCccc----------cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccc
Confidence            9999888764 468999999954          447799999999881000              000000         


Q ss_pred             -------cCCCeEEEEEcCCCC-----------EEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCC-CeEE
Q 015490          299 -------VREPVSSFNVSADGK-----------LLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDS-RALV  359 (406)
Q Consensus       299 -------~~~~i~~~~~sp~~~-----------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~  359 (406)
                             ....+.+++|....-           +.+++-.+..+.+|++.++...+.+. +|...+..+.++|-. +...
T Consensus       334 gs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~-ghsd~~yvLd~Hpfn~ri~m  412 (1113)
T KOG0644|consen  334 GSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM-GHSDEVYVLDVHPFNPRIAM  412 (1113)
T ss_pred             ccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhc-ccccceeeeeecCCCcHhhh
Confidence                   001111222222222           22333345668889999998888875 899999999999954 5556


Q ss_pred             EEECCCcEEEEEecCCcCCC
Q 015490          360 SASMDSSVRVTVIEDKKKSG  379 (406)
Q Consensus       360 s~s~dg~i~iw~~~~~~~~~  379 (406)
                      +++.||...|||+-.+.++.
T Consensus       413 sag~dgst~iwdi~eg~pik  432 (1113)
T KOG0644|consen  413 SAGYDGSTIIWDIWEGIPIK  432 (1113)
T ss_pred             hccCCCceEeeecccCCcce
Confidence            89999999999998776543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.61  E-value=2e-12  Score=116.74  Aligned_cols=238  Identities=17%  Similarity=0.193  Sum_probs=149.1

Q ss_pred             eEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcE-EEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeee
Q 015490          127 GIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQ-LALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNE  205 (406)
Q Consensus       127 ~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~  205 (406)
                      ++++...+...+..+|..+.+.+            ..+.....+ ..+.|+|||+++++++.||.|.++|+.+++.+..+
T Consensus         7 l~~V~~~~~~~v~viD~~t~~~~------------~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i   74 (369)
T PF02239_consen    7 LFYVVERGSGSVAVIDGATNKVV------------ARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATI   74 (369)
T ss_dssp             EEEEEEGGGTEEEEEETTT-SEE------------EEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEE
T ss_pred             EEEEEecCCCEEEEEECCCCeEE------------EEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEE
Confidence            44444433335666776644433            334333333 45789999999999999999999999999988887


Q ss_pred             eccCCceeEEEEccCCCEEEEEe-CCCCEEEEEcCCCeeeeecccC------CcceEEEEEEEcCCCCceEEEEEEEcCC
Q 015490          206 SEAHASVKDLSFSPDGKFLVSLG-NRGPGRVWDLASSAVATPLAKE------NDELFASCRFSPLNNEDYVLYIAAITDR  278 (406)
Q Consensus       206 ~~~~~~i~~~~~s~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~  278 (406)
                      .... ...++++|+||+++++++ ..+.+.++|.++.+.++.+...      ....+..+..+|....     +++.-.+
T Consensus        75 ~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~-----fVv~lkd  148 (369)
T PF02239_consen   75 KVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPE-----FVVNLKD  148 (369)
T ss_dssp             E-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSE-----EEEEETT
T ss_pred             ecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCE-----EEEEEcc
Confidence            6544 468899999999998776 5889999999999988877542      2234667777887774     3344456


Q ss_pred             CcEEEEEeCCCceEEE-EeeecCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCceEEEEeec---cc-----------
Q 015490          279 GASIVTWNTTTWKRIR-TKQVVREPVSSFNVSADGKLLAVGT-ASGDISIIDSSSLQVRTAVKK---AH-----------  342 (406)
Q Consensus       279 ~~~i~~~d~~~~~~~~-~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~---~~-----------  342 (406)
                      .+.|.+.|....+.+. .............|+|++++++++. .++.|-++|.++++....+..   .|           
T Consensus       149 ~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~  228 (369)
T PF02239_consen  149 TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPG  228 (369)
T ss_dssp             TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETT
T ss_pred             CCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCC
Confidence            7899999977654332 2222345678899999999887754 466788888887766554320   00           


Q ss_pred             ---------------------------------------ccceEEEEEcCCCCeEEEE----ECCCcEEEEEecCCcCCC
Q 015490          343 ---------------------------------------LGIVTALAFSYDSRALVSA----SMDSSVRVTVIEDKKKSG  379 (406)
Q Consensus       343 ---------------------------------------~~~v~~~~~sp~~~~l~s~----s~dg~i~iw~~~~~~~~~  379 (406)
                                                             .+.-.-+..+|+++++.+.    ...++|.++|.++.+.+.
T Consensus       229 ~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~  308 (369)
T PF02239_consen  229 FGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVK  308 (369)
T ss_dssp             TEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE
T ss_pred             cceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeE
Confidence                                                   0111345567888888877    345789999999887655


Q ss_pred             Cch
Q 015490          380 GLN  382 (406)
Q Consensus       380 ~~~  382 (406)
                      .+.
T Consensus       309 ~i~  311 (369)
T PF02239_consen  309 TIT  311 (369)
T ss_dssp             -HH
T ss_pred             EEe
Confidence            554

...

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.60  E-value=8.8e-14  Score=118.39  Aligned_cols=227  Identities=11%  Similarity=0.113  Sum_probs=165.4

Q ss_pred             EEecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCC-CEEEEee
Q 015490          108 ELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEG-TIFAAGS  186 (406)
Q Consensus       108 ~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~  186 (406)
                      .....+.+|..+... |+..+.+.++|.+++|........          ...+..+.....+..+.-++.. ..+++|+
T Consensus       100 ~~~l~~~~I~gl~~~-dg~Litc~~sG~l~~~~~k~~d~h----------ss~l~~la~g~g~~~~r~~~~~p~Iva~GG  168 (412)
T KOG3881|consen  100 TVSLGTKSIKGLKLA-DGTLITCVSSGNLQVRHDKSGDLH----------SSKLIKLATGPGLYDVRQTDTDPYIVATGG  168 (412)
T ss_pred             ccccccccccchhhc-CCEEEEEecCCcEEEEeccCCccc----------cccceeeecCCceeeeccCCCCCceEecCc
Confidence            344455666666654 455555556888888876543211          1222233344566667766644 4566698


Q ss_pred             CC--CeEEEEeCCCcceEeeeeccCC---------ceeEEEEccC--CCEEEEEeCCCCEEEEEcCCCe-eeeecccCCc
Q 015490          187 EN--GNLRVFKWPSLEIILNESEAHA---------SVKDLSFSPD--GKFLVSLGNRGPGRVWDLASSA-VATPLAKEND  252 (406)
Q Consensus       187 ~d--g~i~vwd~~~~~~~~~~~~~~~---------~i~~~~~s~~--~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~~~~  252 (406)
                      ..  ..+.+||+++.+.+..-.....         .++++.|-+.  ...|++++.-+.+++||.+.++ ++..+... .
T Consensus       169 ke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~-E  247 (412)
T KOG3881|consen  169 KENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL-E  247 (412)
T ss_pred             hhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc-c
Confidence            88  8899999988865544322211         4678888887  7899999999999999998754 45555443 5


Q ss_pred             ceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEE-eeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 015490          253 ELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRT-KQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSS  331 (406)
Q Consensus       253 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~-~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~  331 (406)
                      .+++++...|.++.      +.++...+.+..+|+++++.... +.+..+.|+++..+|.++++++++-|..|||+|+++
T Consensus       248 ~~is~~~l~p~gn~------Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  248 NPISSTGLTPSGNF------IYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             CcceeeeecCCCcE------EEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence            56889999999983      45667789999999999998777 777789999999999999999999999999999999


Q ss_pred             ceEEEEeecccccceEEEEEcCC
Q 015490          332 LQVRTAVKKAHLGIVTALAFSYD  354 (406)
Q Consensus       332 ~~~~~~~~~~~~~~v~~~~~sp~  354 (406)
                      .+++....  -...++++.+.++
T Consensus       322 rkll~kvY--vKs~lt~il~~~~  342 (412)
T KOG3881|consen  322 RKLLHKVY--VKSRLTFILLRDD  342 (412)
T ss_pred             chhhhhhh--hhccccEEEecCC
Confidence            77776654  4556777777654

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.60  E-value=2.8e-12  Score=108.60  Aligned_cols=205  Identities=13%  Similarity=0.145  Sum_probs=149.2

Q ss_pred             eecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeecc---CCceeEEEEccCCCEEEEEe--CCCCEEE
Q 015490          161 LSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEA---HASVKDLSFSPDGKFLVSLG--NRGPGRV  235 (406)
Q Consensus       161 ~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---~~~i~~~~~s~~~~~l~s~s--~d~~i~i  235 (406)
                      +..+.-...|.++.++.+  .|+++-.+ .|+|||+++.+.+.++...   ...+.++.+++++.+++.=+  ..|.|.+
T Consensus        81 ICe~~fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l  157 (391)
T KOG2110|consen   81 ICEIFFPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL  157 (391)
T ss_pred             EEEEecCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence            334445678889998764  45555554 4999999999988877554   22577777777777888743  4688999


Q ss_pred             EEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCc-EEEEEeCCCceEEEEeeecC--CCeEEEEEcCCC
Q 015490          236 WDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGA-SIVTWNTTTWKRIRTKQVVR--EPVSSFNVSADG  312 (406)
Q Consensus       236 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~i~~~d~~~~~~~~~~~~~~--~~i~~~~~sp~~  312 (406)
                      ||..+-+.+..+..| ...+.+++|+++|..      +|++++.| .|+|+.+.+++.+.+|+...  ..|.+++|+|++
T Consensus       158 ~d~~nl~~v~~I~aH-~~~lAalafs~~G~l------lATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds  230 (391)
T KOG2110|consen  158 FDTINLQPVNTINAH-KGPLAALAFSPDGTL------LATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDS  230 (391)
T ss_pred             EEcccceeeeEEEec-CCceeEEEECCCCCE------EEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCC
Confidence            999999999888854 567889999999983      45555554 57999999999999887653  468899999999


Q ss_pred             CEEEEEeCCCcEEEEECCCceEEE----------------------------------Eee--cccccce-EEEEEc--C
Q 015490          313 KLLAVGTASGDISIIDSSSLQVRT----------------------------------AVK--KAHLGIV-TALAFS--Y  353 (406)
Q Consensus       313 ~~l~~~~~dg~i~i~d~~~~~~~~----------------------------------~~~--~~~~~~v-~~~~~s--p  353 (406)
                      ++|++.+..++|++|.+.......                                  .+.  ....... ..+.+.  +
T Consensus       231 ~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~  310 (391)
T KOG2110|consen  231 QFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQ  310 (391)
T ss_pred             CeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccC
Confidence            999999999999999886321000                                  000  0001111 233344  3


Q ss_pred             CCCeEEEEECCCcEEEEEecCC
Q 015490          354 DSRALVSASMDSSVRVTVIEDK  375 (406)
Q Consensus       354 ~~~~l~s~s~dg~i~iw~~~~~  375 (406)
                      ...++..++.||.++.|.+...
T Consensus       311 ~~~~v~vas~dG~~y~y~l~~~  332 (391)
T KOG2110|consen  311 KIPRVLVASYDGHLYSYRLPPK  332 (391)
T ss_pred             CCCEEEEEEcCCeEEEEEcCCC
Confidence            5678889999999999998654

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=1.4e-13  Score=117.15  Aligned_cols=248  Identities=12%  Similarity=0.143  Sum_probs=169.7

Q ss_pred             ccceeEEec-CCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc---CcEEEEEECC
Q 015490          103 DQPVAELRT-DSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV---GQQLALTFDS  177 (406)
Q Consensus       103 ~~~~~~~~~-h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~  177 (406)
                      ++|+..... |...|.|++|....+++++|. ++++.+.++...              +.+..+.+.   +.|..+..+|
T Consensus        94 ~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~--------------qsi~V~~~~~~~~~VY~m~~~P  159 (609)
T KOG4227|consen   94 PKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETK--------------QSIYVANENNNRGDVYHMDQHP  159 (609)
T ss_pred             CCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccc--------------eeeeeecccCcccceeecccCC
Confidence            456655543 458999999999888888887 777766665532              222223333   5899999999


Q ss_pred             CCCEEEEeeCCCeEEEEeCCCcc-eEe--eeeccCCceeEEEEccCC-CEEEEEeCCCCEEEEEcCCCeee-eeccc---
Q 015490          178 EGTIFAAGSENGNLRVFKWPSLE-IIL--NESEAHASVKDLSFSPDG-KFLVSLGNRGPGRVWDLASSAVA-TPLAK---  249 (406)
Q Consensus       178 ~g~~l~~~~~dg~i~vwd~~~~~-~~~--~~~~~~~~i~~~~~s~~~-~~l~s~s~d~~i~iwd~~~~~~~-~~~~~---  249 (406)
                      ..+.|++.+.++.|.+||.+... ...  ...........+.|+|.. .+|++.+..+.+-+||.+..... .....   
T Consensus       160 ~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~  239 (609)
T KOG4227|consen  160 TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKG  239 (609)
T ss_pred             CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhcccc
Confidence            99999999999999999997654 221  222233477889999964 47788888889999999764321 11111   


Q ss_pred             -CC-cceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceE-EEEeeec------CCCeEEEEEcCCCCEEEEEeC
Q 015490          250 -EN-DELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKR-IRTKQVV------REPVSSFNVSADGKLLAVGTA  320 (406)
Q Consensus       250 -~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~------~~~i~~~~~sp~~~~l~~~~~  320 (406)
                       .. ........|+|.|.+     +++. .....-.+||+-+.++ +..+...      ...+.+++|-.|- .+++|+.
T Consensus       240 L~~~~~~~M~~~~~~~G~Q-----~msi-RR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD  312 (609)
T KOG4227|consen  240 LPQENTEWMGSLWSPSGNQ-----FMSI-RRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSD  312 (609)
T ss_pred             CcccchhhhheeeCCCCCe-----ehhh-hccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCc
Confidence             11 122357889999986     2222 3344455678766443 3333211      1346677887654 4899999


Q ss_pred             CCcEEEEECCC-----c------------------eEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEe
Q 015490          321 SGDISIIDSSS-----L------------------QVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVI  372 (406)
Q Consensus       321 dg~i~i~d~~~-----~------------------~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~  372 (406)
                      +-.|++|.+..     |                  +.+..+ ++|..-++.+.|+|...+|++.+-...+++|.-
T Consensus       313 ~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VL-rGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  313 HWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVL-RGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             ccceEEEecCCCccccCccccCcchhhCchhheecceeEEE-ecccccccceeecCCcceEeccchhhheecccc
Confidence            99999998752     1                  112233 589999999999999999999999999999964

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=1.3e-12  Score=121.03  Aligned_cols=202  Identities=15%  Similarity=0.094  Sum_probs=127.3

Q ss_pred             CcEEEEEECCCCCE--E-EEeeCC--CeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeC-CC----CEEEEE
Q 015490          168 GQQLALTFDSEGTI--F-AAGSEN--GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGN-RG----PGRVWD  237 (406)
Q Consensus       168 ~~v~~~~~s~~g~~--l-~~~~~d--g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~-d~----~i~iwd  237 (406)
                      .....-+|||||+.  + ++...+  ..|.+.++.+++.. .+....+.....+|||||+.|+..+. +|    .+.+|+
T Consensus       185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~  263 (428)
T PRK01029        185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFS  263 (428)
T ss_pred             CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEee
Confidence            44567799999975  2 233333  36888888877643 33333444567899999998887663 22    344467


Q ss_pred             cCCC--eeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCc--EEEEEeCCC-ceEEEEeeecCCCeEEEEEcCCC
Q 015490          238 LASS--AVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGA--SIVTWNTTT-WKRIRTKQVVREPVSSFNVSADG  312 (406)
Q Consensus       238 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~i~~~d~~~-~~~~~~~~~~~~~i~~~~~sp~~  312 (406)
                      +..+  .....+...........+|+|+++.     ++.....++  .|+++++.. +.....+..+...+....|||||
T Consensus       264 ~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~-----Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG  338 (428)
T PRK01029        264 LETGAIGKPRRLLNEAFGTQGNPSFSPDGTR-----LVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG  338 (428)
T ss_pred             cccCCCCcceEeecCCCCCcCCeEECCCCCE-----EEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCC
Confidence            6653  1222222222223456799999996     233333344  566666642 23344444444567789999999


Q ss_pred             CEEEEEeCC---CcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEEC---CCcEEEEEecCCcC
Q 015490          313 KLLAVGTAS---GDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASM---DSSVRVTVIEDKKK  377 (406)
Q Consensus       313 ~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~---dg~i~iw~~~~~~~  377 (406)
                      ++|+..+.+   ..|.+||+.+++......  ....+....|+|||++|+..+.   ...|++|++..++.
T Consensus       339 ~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~--~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~  407 (428)
T PRK01029        339 KKIAFCSVIKGVRQICVYDLATGRDYQLTT--SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT  407 (428)
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCeEEccC--CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            999877653   469999999887654432  3345678999999998875443   34688888876643

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.59  E-value=1.4e-13  Score=132.65  Aligned_cols=216  Identities=16%  Similarity=0.214  Sum_probs=152.9

Q ss_pred             ceeeeccc-ccCcEEEEEECCC-CCEEEEeeCCCeEEEEeCCCc-------ceEeeeeccCCceeEEEEccCCCEEEEEe
Q 015490          158 EKVLSQLE-NVGQQLALTFDSE-GTIFAAGSENGNLRVFKWPSL-------EIILNESEAHASVKDLSFSPDGKFLVSLG  228 (406)
Q Consensus       158 ~~~~~~~~-~~~~v~~~~~s~~-g~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~i~~~~~s~~~~~l~s~s  228 (406)
                      +..+..+. |...+..++.++. +.+|++|+.||+|++|+.+..       +...++......+.++...+.+..+|+++
T Consensus      1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred             ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc
Confidence            33444443 4466777777765 499999999999999998532       22233333455889999999999999999


Q ss_pred             CCCCEEEEEcCCCe-------eeeecccCCcc-eEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEee--e
Q 015490          229 NRGPGRVWDLASSA-------VATPLAKENDE-LFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQ--V  298 (406)
Q Consensus       229 ~d~~i~iwd~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~--~  298 (406)
                      .||.|++.++....       ..+....+..+ .+..-+|......  .  .++.+...+.|..||+++.....+++  .
T Consensus      1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S--~--~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQS--H--VLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred             CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccc--e--eEEEEEeccceEEecchhhhhHHhhhcCc
Confidence            99999999987521       11222222223 3333344444332  1  23333467889999999866544443  2


Q ss_pred             cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCC---CeEEEEE--CCCcEEEEEec
Q 015490          299 VREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDS---RALVSAS--MDSSVRVTVIE  373 (406)
Q Consensus       299 ~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~---~~l~s~s--~dg~i~iw~~~  373 (406)
                      ..+.|++++.+|.++++++|+..|.+.+||++-+.++..+..++..++..+..+|-.   ...++++  ..+-|.+|++.
T Consensus      1194 ~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~ 1273 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNME 1273 (1431)
T ss_pred             cccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecc
Confidence            347899999999999999999999999999999999988876777888888877742   4555444  46789999999


Q ss_pred             CCcC
Q 015490          374 DKKK  377 (406)
Q Consensus       374 ~~~~  377 (406)
                      +|..
T Consensus      1274 ~g~~ 1277 (1431)
T KOG1240|consen 1274 TGLR 1277 (1431)
T ss_pred             cCcc
Confidence            9843

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.58  E-value=2.4e-12  Score=107.41  Aligned_cols=248  Identities=15%  Similarity=0.113  Sum_probs=158.9

Q ss_pred             ceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCCEEE
Q 015490          105 PVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIFA  183 (406)
Q Consensus       105 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~  183 (406)
                      --..+......+.+++|||||+.++..+.-..+|-.|...+...             ..+.+. ..+..++|+|||++.+
T Consensus        83 w~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~-------------~~~~~pK~~~kg~~f~~dg~f~a  149 (447)
T KOG4497|consen   83 WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG-------------YLLPHPKTNVKGYAFHPDGQFCA  149 (447)
T ss_pred             eEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee-------------EEecccccCceeEEECCCCceee
Confidence            44567777889999999999998888774444444444432211             111122 4456778888887766


Q ss_pred             EeeC------------------------------------CCeEEEEeCCCcceEeeeeccC-CceeEEEEccCCCEEEE
Q 015490          184 AGSE------------------------------------NGNLRVFKWPSLEIILNESEAH-ASVKDLSFSPDGKFLVS  226 (406)
Q Consensus       184 ~~~~------------------------------------dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~s  226 (406)
                      ..++                                    +..+.|||---.-.+.  .-+. -.+..++|+|.+++|++
T Consensus       150 i~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~--aYe~~lG~k~v~wsP~~qflav  227 (447)
T KOG4497|consen  150 ILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY--AYERGLGLKFVEWSPCNQFLAV  227 (447)
T ss_pred             eeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee--eeeeccceeEEEeccccceEEe
Confidence            6543                                    1234455522111111  1222 26889999999999999


Q ss_pred             EeCCCCEEEEEcCCCe------------------------------------------------------------eeee
Q 015490          227 LGNRGPGRVWDLASSA------------------------------------------------------------VATP  246 (406)
Q Consensus       227 ~s~d~~i~iwd~~~~~------------------------------------------------------------~~~~  246 (406)
                      |+.|+.+|+.+--+-+                                                            .+..
T Consensus       228 GsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~  307 (447)
T KOG4497|consen  228 GSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHK  307 (447)
T ss_pred             eccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeec
Confidence            9999988875431100                                                            0011


Q ss_pred             ccc-----CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCC
Q 015490          247 LAK-----ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAS  321 (406)
Q Consensus       247 ~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d  321 (406)
                      ++.     .....+..++|++|..+    ..+-....-..+.+||++..+....+ ....+|....|+|....|+.+...
T Consensus       308 lkp~tD~pnPk~g~g~lafs~Ds~y----~aTrnd~~PnalW~Wdlq~l~l~avL-iQk~piraf~WdP~~prL~vctg~  382 (447)
T KOG4497|consen  308 LKPPTDFPNPKCGAGKLAFSCDSTY----AATRNDKYPNALWLWDLQNLKLHAVL-IQKHPIRAFEWDPGRPRLVVCTGK  382 (447)
T ss_pred             ccCCCCCCCcccccceeeecCCceE----EeeecCCCCceEEEEechhhhhhhhh-hhccceeEEEeCCCCceEEEEcCC
Confidence            110     01223567899999874    22222233468999999986654333 345789999999998888888878


Q ss_pred             CcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCC
Q 015490          322 GDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDK  375 (406)
Q Consensus       322 g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~  375 (406)
                      ..+++|.......+....  ..-.|..++|.-+|..++-++.|.-. +--+++.
T Consensus       383 srLY~W~psg~~~V~vP~--~GF~i~~l~W~~~g~~i~l~~kDafc-~a~ve~e  433 (447)
T KOG4497|consen  383 SRLYFWAPSGPRVVGVPK--KGFNIQKLQWLQPGEFIVLCGKDAFC-VAIVEDE  433 (447)
T ss_pred             ceEEEEcCCCceEEecCC--CCceeeeEEecCCCcEEEEEcCCceE-EEEecCC
Confidence            889999987666555543  44679999999999999999988632 3244443

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.58  E-value=7.7e-11  Score=100.26  Aligned_cols=271  Identities=13%  Similarity=0.186  Sum_probs=180.6

Q ss_pred             ccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe----cCCeEEEEEecccccceeecceeccceeee
Q 015490           87 NAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL----QNSCRLFEWDEVENTEIRRLGVKISEKVLS  162 (406)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  162 (406)
                      ..+..+.++.....+.   ...+-.+.+.++-|+|+|++++|.++.    .+.+.-|.||..++.....-        ..
T Consensus        16 ~gI~v~~ld~~~g~l~---~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln--------~~   84 (346)
T COG2706          16 QGIYVFNLDTKTGELS---LLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLN--------RQ   84 (346)
T ss_pred             CceEEEEEeCcccccc---hhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEee--------cc
Confidence            4567788886655442   223445678889999999999998875    46677788886544322110        00


Q ss_pred             cccccCcEEEEEECCCCCEEEEeeC-CCeEEEEeCCC-cceE--eeeeccCC----------ceeEEEEccCCCEEEEEe
Q 015490          163 QLENVGQQLALTFDSEGTIFAAGSE-NGNLRVFKWPS-LEII--LNESEAHA----------SVKDLSFSPDGKFLVSLG  228 (406)
Q Consensus       163 ~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~vwd~~~-~~~~--~~~~~~~~----------~i~~~~~s~~~~~l~s~s  228 (406)
                      ...+ .+-+.++++++|++++++.. .|.|.++-++. |...  .....|.+          .+....+.|++++|++..
T Consensus        85 ~~~g-~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~D  163 (346)
T COG2706          85 TLPG-SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPD  163 (346)
T ss_pred             ccCC-CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEee
Confidence            1112 23378999999999998866 57899999865 3221  11222222          278899999999998875


Q ss_pred             C-CCCEEEEEcCCCeeeeec--ccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc-eEEEEeeec-----
Q 015490          229 N-RGPGRVWDLASSAVATPL--AKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW-KRIRTKQVV-----  299 (406)
Q Consensus       229 ~-d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~-----  299 (406)
                      - -..|.+|++..|+....-  ....+...+.+.|+|+++.     ..+...-+++|.+|..+.. ..+..++.+     
T Consensus       164 LG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~-----aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~  238 (346)
T COG2706         164 LGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKY-----AYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPE  238 (346)
T ss_pred             cCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcE-----EEEEeccCCEEEEEEEcCCCceEEEeeeeccCcc
Confidence            3 237999999977654321  1234445678999999994     4455577899999988763 222332221     


Q ss_pred             ----CCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCc-eEEEEe--ecccccceEEEEEcCCCCeEEEEECC-CcEEEE
Q 015490          300 ----REPVSSFNVSADGKLLAVGTA-SGDISIIDSSSL-QVRTAV--KKAHLGIVTALAFSYDSRALVSASMD-SSVRVT  370 (406)
Q Consensus       300 ----~~~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~~~-~~~~~~--~~~~~~~v~~~~~sp~~~~l~s~s~d-g~i~iw  370 (406)
                          ......+..+|||++|.++.. ...|.+|.+... ..+...  ...+....+...++++|++|+++..+ ..|.+|
T Consensus       239 dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf  318 (346)
T COG2706         239 DFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF  318 (346)
T ss_pred             ccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence                245778999999999998766 346888877532 222222  12344557899999999999988865 468888


Q ss_pred             EecC
Q 015490          371 VIED  374 (406)
Q Consensus       371 ~~~~  374 (406)
                      .++.
T Consensus       319 ~~d~  322 (346)
T COG2706         319 ERDK  322 (346)
T ss_pred             EEcC
Confidence            8754

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.56  E-value=1.1e-13  Score=111.90  Aligned_cols=156  Identities=17%  Similarity=0.191  Sum_probs=120.0

Q ss_pred             CcEEEEEECC-CC--CEEEEeeCCCeEEEEeCCCcce----------EeeeeccCCceeEEEEccCCCEEEEEeCCCCEE
Q 015490          168 GQQLALTFDS-EG--TIFAAGSENGNLRVFKWPSLEI----------ILNESEAHASVKDLSFSPDGKFLVSLGNRGPGR  234 (406)
Q Consensus       168 ~~v~~~~~s~-~g--~~l~~~~~dg~i~vwd~~~~~~----------~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~  234 (406)
                      +.+.|..+.. ++  -++++|-++|.+.+||+.++..          ......|..+|.++.+.+.-..=++++.+..+.
T Consensus       151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~  230 (323)
T KOG0322|consen  151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLV  230 (323)
T ss_pred             CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccce
Confidence            3455555433 23  2566788899999999988733          333455667899999987655666777788899


Q ss_pred             EEEcCCC--eeee-ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCC
Q 015490          235 VWDLASS--AVAT-PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSAD  311 (406)
Q Consensus       235 iwd~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~  311 (406)
                      .|.+...  .... ....-....+..+...||++      ++++++.|+.|++|..++..++..++.|...|.+++|+|+
T Consensus       231 ~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~K------IlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd  304 (323)
T KOG0322|consen  231 MYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGK------ILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPD  304 (323)
T ss_pred             eeeeccccCcccccceEEecCCCccceEEccCCc------EEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCC
Confidence            9988643  2211 11111233467889999998      6889999999999999999999999999999999999999


Q ss_pred             CCEEEEEeCCCcEEEEEC
Q 015490          312 GKLLAVGTASGDISIIDS  329 (406)
Q Consensus       312 ~~~l~~~~~dg~i~i~d~  329 (406)
                      ...+|.++.|++|.+|++
T Consensus       305 ~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  305 CELMAAASKDARISLWKL  322 (323)
T ss_pred             CchhhhccCCceEEeeec
Confidence            999999999999999986

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.56  E-value=5.3e-11  Score=101.20  Aligned_cols=273  Identities=12%  Similarity=0.149  Sum_probs=165.8

Q ss_pred             CCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe--cCCeEEEEEecc
Q 015490           67 RRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEV  144 (406)
Q Consensus        67 ~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~  144 (406)
                      ++.+.++++...     |....+..+.+|.+.+.+..-....+  ...+.+.++++++|++++++.  .+.+.++-+...
T Consensus        49 ~~~~~LY~v~~~-----~~~ggvaay~iD~~~G~Lt~ln~~~~--~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~d  121 (346)
T COG2706          49 PDQRHLYVVNEP-----GEEGGVAAYRIDPDDGRLTFLNRQTL--PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQAD  121 (346)
T ss_pred             CCCCEEEEEEec-----CCcCcEEEEEEcCCCCeEEEeecccc--CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccC
Confidence            355566665332     23557788999987655433222222  233448999999999999987  566666655433


Q ss_pred             cccceeeccee-ccceeeecccccCcEEEEEECCCCCEEEEeeC-CCeEEEEeCCCcceEeee---eccCCceeEEEEcc
Q 015490          145 ENTEIRRLGVK-ISEKVLSQLENVGQQLALTFDSEGTIFAAGSE-NGNLRVFKWPSLEIILNE---SEAHASVKDLSFSP  219 (406)
Q Consensus       145 ~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~vwd~~~~~~~~~~---~~~~~~i~~~~~s~  219 (406)
                       +........- ....-...-+....+.+..+.|++++|++..- -..|.+|++..++.....   ......-+.|.|+|
T Consensus       122 -G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp  200 (346)
T COG2706         122 -GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP  200 (346)
T ss_pred             -CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcC
Confidence             2221111110 00000001111233888999999999988743 237999999877643221   12233679999999


Q ss_pred             CCCEEEEEeC-CCCEEEEEcCCC-eeeee------ccc--CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC-
Q 015490          220 DGKFLVSLGN-RGPGRVWDLASS-AVATP------LAK--ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT-  288 (406)
Q Consensus       220 ~~~~l~s~s~-d~~i~iwd~~~~-~~~~~------~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~-  288 (406)
                      ++++....++ +++|.+|..... .....      ++.  ........+..+++|+.     +.++......|.++.+. 
T Consensus       201 n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrF-----LYasNRg~dsI~~f~V~~  275 (346)
T COG2706         201 NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRF-----LYASNRGHDSIAVFSVDP  275 (346)
T ss_pred             CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCE-----EEEecCCCCeEEEEEEcC
Confidence            9998777765 889999998763 22221      211  12334667899999994     66666667788888664 


Q ss_pred             -CceE--EEEeeecCCCeEEEEEcCCCCEEEEEeCC-CcEEEEECC--CceEEEEeecccccceEEEEEc
Q 015490          289 -TWKR--IRTKQVVREPVSSFNVSADGKLLAVGTAS-GDISIIDSS--SLQVRTAVKKAHLGIVTALAFS  352 (406)
Q Consensus       289 -~~~~--~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-g~i~i~d~~--~~~~~~~~~~~~~~~v~~~~~s  352 (406)
                       +++.  +.....+....+.+.|++.|++|+++..+ ..|.+|..+  +|+..............|+.|.
T Consensus       276 ~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~  345 (346)
T COG2706         276 DGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL  345 (346)
T ss_pred             CCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence             3332  22222233346889999999999998874 458888664  4554443332344445566664

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.56  E-value=2.5e-12  Score=120.14  Aligned_cols=190  Identities=17%  Similarity=0.155  Sum_probs=129.5

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCC---CeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEE-eCCC--CEEEEEcC
Q 015490          166 NVGQQLALTFDSEGTIFAAGSEN---GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSL-GNRG--PGRVWDLA  239 (406)
Q Consensus       166 ~~~~v~~~~~s~~g~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-s~d~--~i~iwd~~  239 (406)
                      +...+...+|+|||++|+.+..+   ..|++||+.+++... +......+.+++|+|||+.|+.. +.++  .|++||+.
T Consensus       188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~  266 (417)
T TIGR02800       188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD  266 (417)
T ss_pred             CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECC
Confidence            34467888999999999887654   479999998876543 33344456779999999977654 4343  58889998


Q ss_pred             CCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEe
Q 015490          240 SSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGT  319 (406)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~  319 (406)
                      ++...... .+ ........|+|+++.   +++.........|+++|+.+++. ..+..+......+.|+|+|++|+.++
T Consensus       267 ~~~~~~l~-~~-~~~~~~~~~s~dg~~---l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~  340 (417)
T TIGR02800       267 GKQLTRLT-NG-PGIDTEPSWSPDGKS---IAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVH  340 (417)
T ss_pred             CCCEEECC-CC-CCCCCCEEECCCCCE---EEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEE
Confidence            77544332 22 223346789999985   22222122334788999887664 33444445677889999999999988


Q ss_pred             CCC---cEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCC
Q 015490          320 ASG---DISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDS  365 (406)
Q Consensus       320 ~dg---~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg  365 (406)
                      .++   .|.+||+.++.... +.  .........|+|||++|+..+.++
T Consensus       341 ~~~~~~~i~~~d~~~~~~~~-l~--~~~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       341 REGGGFNIAVMDLDGGGERV-LT--DTGLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             ccCCceEEEEEeCCCCCeEE-cc--CCCCCCCceECCCCCEEEEEEeCC
Confidence            765   78999998755432 22  122345678999999988777654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=3.6e-12  Score=119.33  Aligned_cols=199  Identities=18%  Similarity=0.142  Sum_probs=130.7

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCC---CeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEE-eCCC--CEEEEEcC
Q 015490          166 NVGQQLALTFDSEGTIFAAGSEN---GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSL-GNRG--PGRVWDLA  239 (406)
Q Consensus       166 ~~~~v~~~~~s~~g~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-s~d~--~i~iwd~~  239 (406)
                      +...+....|||||+.|+..+.+   ..|.+||+.+++... +......+....|+|||+.|+.. +.++  .|++||+.
T Consensus       197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~  275 (430)
T PRK00178        197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA  275 (430)
T ss_pred             CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECC
Confidence            44678899999999998876543   369999998876543 33333345679999999988754 4444  58888998


Q ss_pred             CCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEe
Q 015490          240 SSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGT  319 (406)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~  319 (406)
                      +++... +..+ ........|+|+++.   +++.........|+++|+.+++... +...........|+|||++|+..+
T Consensus       276 ~~~~~~-lt~~-~~~~~~~~~spDg~~---i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~  349 (430)
T PRK00178        276 SRQLSR-VTNH-PAIDTEPFWGKDGRT---LYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVH  349 (430)
T ss_pred             CCCeEE-cccC-CCCcCCeEECCCCCE---EEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEE
Confidence            876543 3322 223456789999985   2222222234578888988776433 222223345678999999998876


Q ss_pred             CC-C--cEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECC-C--cEEEEEecC
Q 015490          320 AS-G--DISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMD-S--SVRVTVIED  374 (406)
Q Consensus       320 ~d-g--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d-g--~i~iw~~~~  374 (406)
                      .+ +  .|.++|+.+++... +.  +........|+|||++++..+.+ +  .|.++++..
T Consensus       350 ~~~~~~~l~~~dl~tg~~~~-lt--~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g  407 (430)
T PRK00178        350 RQDGNFHVAAQDLQRGSVRI-LT--DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING  407 (430)
T ss_pred             ccCCceEEEEEECCCCCEEE-cc--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence            53 3  58889998876533 32  22223356899999998876644 3  466666643

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=4.6e-14  Score=123.30  Aligned_cols=265  Identities=12%  Similarity=0.126  Sum_probs=187.4

Q ss_pred             ceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEeccccccee-------ec------------------------
Q 015490          105 PVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIR-------RL------------------------  152 (406)
Q Consensus       105 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~-------~~------------------------  152 (406)
                      ....|..|.+.|..+.|+..|..|++++ +..+.+|+|.........       .+                        
T Consensus       134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~  213 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV  213 (559)
T ss_pred             hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence            4457889999999999999999999998 778888888764321110       00                        


Q ss_pred             -ceecc---ceeeecccccCcEEEEEECCCC-CEEEEeeCCCeEEEEeCCCcceEeeee---ccCC---ceeEEEEccCC
Q 015490          153 -GVKIS---EKVLSQLENVGQQLALTFDSEG-TIFAAGSENGNLRVFKWPSLEIILNES---EAHA---SVKDLSFSPDG  221 (406)
Q Consensus       153 -~~~~~---~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~---~i~~~~~s~~~  221 (406)
                       .+...   ........|+++|..++.-|+. .-|.+++.|+.+.-+|++.+.....+.   ....   ..+.++..|..
T Consensus       214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n  293 (559)
T KOG1334|consen  214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN  293 (559)
T ss_pred             eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence             00000   1122233466888899998865 678899999999999997765433222   1222   56788888865


Q ss_pred             C-EEEEEeCCCCEEEEEcCCCee------eeeccc-----CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC
Q 015490          222 K-FLVSLGNRGPGRVWDLASSAV------ATPLAK-----ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT  289 (406)
Q Consensus       222 ~-~l~s~s~d~~i~iwd~~~~~~------~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~  289 (406)
                      . .+++++.|..+++||.+.-..      +..+..     .....|++++|+.++..     +++ ...|-.|+++.-..
T Consensus       294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sE-----lLa-SYnDe~IYLF~~~~  367 (559)
T KOG1334|consen  294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSE-----LLA-SYNDEDIYLFNKSM  367 (559)
T ss_pred             ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccc-----eee-eecccceEEecccc
Confidence            5 899999999999999875322      122221     23345899999988876     222 24466788884332


Q ss_pred             --c----------eEEEE-eeecCC--CeEEEE-EcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcC
Q 015490          290 --W----------KRIRT-KQVVRE--PVSSFN-VSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSY  353 (406)
Q Consensus       290 --~----------~~~~~-~~~~~~--~i~~~~-~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp  353 (406)
                        +          ..+.. +++|..  .|..+- |-|...|+++|+.-|.|.||+-.+++.+..+. +...-|+|+.-+|
T Consensus       368 ~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Me-gDr~VVNCLEpHP  446 (559)
T KOG1334|consen  368 GDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFME-GDRHVVNCLEPHP  446 (559)
T ss_pred             ccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhh-cccceEeccCCCC
Confidence              2          12222 566653  355554 56788999999999999999999999988886 5555899999999


Q ss_pred             CCCeEEEEECCCcEEEEEecCCc
Q 015490          354 DSRALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       354 ~~~~l~s~s~dg~i~iw~~~~~~  376 (406)
                      --..||+++-|..|+||.-.+.+
T Consensus       447 ~~PvLAsSGid~DVKIWTP~~~e  469 (559)
T KOG1334|consen  447 HLPVLASSGIDHDVKIWTPLTAE  469 (559)
T ss_pred             CCchhhccCCccceeeecCCccc
Confidence            99999999999999999885443

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.55  E-value=1.7e-11  Score=102.03  Aligned_cols=196  Identities=15%  Similarity=0.244  Sum_probs=134.0

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEeccccc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENT  147 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~  147 (406)
                      ..+++++.|||+..++ .+|++.+|.  ...    ..++.++. -..+|.++.+.+  ..+++.-.+.+.||.+..+ .+
T Consensus        57 R~N~laLVGGg~~pky-~pNkviIWD--D~k----~~~i~el~-f~~~I~~V~l~r--~riVvvl~~~I~VytF~~n-~k  125 (346)
T KOG2111|consen   57 RSNYLALVGGGSRPKY-PPNKVIIWD--DLK----ERCIIELS-FNSEIKAVKLRR--DRIVVVLENKIYVYTFPDN-PK  125 (346)
T ss_pred             hhceEEEecCCCCCCC-CCceEEEEe--ccc----CcEEEEEE-eccceeeEEEcC--CeEEEEecCeEEEEEcCCC-hh
Confidence            3466666666554433 355655555  222    34555553 467899999976  4677777888888776532 22


Q ss_pred             ceeecceeccceeeecccccCcEEEEEECCCCCEEEE-eeCCCeEEEEeCCCcce--EeeeeccCCceeEEEEccCCCEE
Q 015490          148 EIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAA-GSENGNLRVFKWPSLEI--ILNESEAHASVKDLSFSPDGKFL  224 (406)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l  224 (406)
                      .++.+..         ...+....+++-+.+..+||. |-.-|.|+|-|+...+.  ...+..|...|.|++.+.+|..+
T Consensus       126 ~l~~~et---------~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~v  196 (346)
T KOG2111|consen  126 LLHVIET---------RSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLV  196 (346)
T ss_pred             heeeeec---------ccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEE
Confidence            2222221         122223333333334445554 34568999999976554  45677888899999999999999


Q ss_pred             EEEeCCCC-EEEEEcCCCeeeeecccC-CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC
Q 015490          225 VSLGNRGP-GRVWDLASSAVATPLAKE-NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT  289 (406)
Q Consensus       225 ~s~s~d~~-i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~  289 (406)
                      |++|..|+ |||||..+|+.+..+..+ ....+.+++|+|+..      +++..++.|+|+++.++.
T Consensus       197 ATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s------~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  197 ATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS------WLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             EEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc------EEEEEcCCCeEEEEEeec
Confidence            99999987 799999999999988653 345699999999998      456668899999998764

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=7.6e-12  Score=116.81  Aligned_cols=198  Identities=15%  Similarity=0.142  Sum_probs=127.1

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCC---CeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEE-eCCCC--EEEEEcC
Q 015490          166 NVGQQLALTFDSEGTIFAAGSEN---GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSL-GNRGP--GRVWDLA  239 (406)
Q Consensus       166 ~~~~v~~~~~s~~g~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-s~d~~--i~iwd~~  239 (406)
                      ....+.+..|||||+.|+..+.+   ..|++||+.+++... +..........+|+|||+.|+.. +.++.  |+++|+.
T Consensus       216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~  294 (448)
T PRK04792        216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA  294 (448)
T ss_pred             CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence            44577889999999988876543   368899998876532 22223334578999999988764 55664  7778888


Q ss_pred             CCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEe
Q 015490          240 SSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGT  319 (406)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~  319 (406)
                      +++... +..+ ........|+|+++.   +++.........|+++|+.+++... +..........+|+|||++|+..+
T Consensus       295 tg~~~~-lt~~-~~~~~~p~wSpDG~~---I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~  368 (448)
T PRK04792        295 TKALTR-ITRH-RAIDTEPSWHPDGKS---LIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVN  368 (448)
T ss_pred             CCCeEE-CccC-CCCccceEECCCCCE---EEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEE
Confidence            776543 3322 234557899999985   2222222334578888888776433 322223345679999999998876


Q ss_pred             C-CC--cEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECC-Cc--EEEEEec
Q 015490          320 A-SG--DISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMD-SS--VRVTVIE  373 (406)
Q Consensus       320 ~-dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d-g~--i~iw~~~  373 (406)
                      . ++  .|.++|+.+++... +...  .......|+|||++|+..+.+ +.  +++++..
T Consensus       369 ~~~g~~~I~~~dl~~g~~~~-lt~~--~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~  425 (448)
T PRK04792        369 RTNGKFNIARQDLETGAMQV-LTST--RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID  425 (448)
T ss_pred             ecCCceEEEEEECCCCCeEE-ccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            5 33  46667888776533 2212  122355899999988765543 33  6666663

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.53  E-value=8.2e-12  Score=116.69  Aligned_cols=236  Identities=17%  Similarity=0.195  Sum_probs=145.6

Q ss_pred             EEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeecccc
Q 015490           89 VLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLEN  166 (406)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (406)
                      ..++.++...     .....+..+...+.+.+|+|||++|+.+.  ++...||.++..++....          +  ...
T Consensus       170 ~~l~~~d~~g-----~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----------~--~~~  232 (417)
T TIGR02800       170 YELQVADYDG-----ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----------V--ASF  232 (417)
T ss_pred             ceEEEEcCCC-----CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----------e--ecC
Confidence            3555555543     23455666777899999999999999875  344577777765442211          1  112


Q ss_pred             cCcEEEEEECCCCCEEEE-eeCCC--eEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCC-C--CEEEEEcCC
Q 015490          167 VGQQLALTFDSEGTIFAA-GSENG--NLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNR-G--PGRVWDLAS  240 (406)
Q Consensus       167 ~~~v~~~~~s~~g~~l~~-~~~dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d-~--~i~iwd~~~  240 (406)
                      ...+.+++|+|||+.|+. .+.++  .|++||+.++... .+..+........|+|||+.|+..+.. +  .|+++|+.+
T Consensus       233 ~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~  311 (417)
T TIGR02800       233 PGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG  311 (417)
T ss_pred             CCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence            344567899999987764 34443  5888998877543 333344445678999999988876643 3  578888877


Q ss_pred             CeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC
Q 015490          241 SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA  320 (406)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~  320 (406)
                      ++... +... ........|+|+++.   +++.........|.+||+.++.. ..+... .......|+|||++|+..+.
T Consensus       312 ~~~~~-l~~~-~~~~~~~~~spdg~~---i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~  384 (417)
T TIGR02800       312 GEVRR-LTFR-GGYNASPSWSPDGDL---IAFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATT  384 (417)
T ss_pred             CCEEE-eecC-CCCccCeEECCCCCE---EEEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEe
Confidence            65433 2222 233557889999984   22222222234899999987543 223222 23456789999999988777


Q ss_pred             CC---cEEEEECCCceEEEEeecccccceEEEEE
Q 015490          321 SG---DISIIDSSSLQVRTAVKKAHLGIVTALAF  351 (406)
Q Consensus       321 dg---~i~i~d~~~~~~~~~~~~~~~~~v~~~~~  351 (406)
                      ++   .+.+.+.. +.....+. .+.+.+..+.|
T Consensus       385 ~~~~~~l~~~~~~-g~~~~~~~-~~~g~~~~~~w  416 (417)
T TIGR02800       385 RGGRGVLGLVSTD-GRFRARLP-LGNGDVREPAW  416 (417)
T ss_pred             CCCcEEEEEEECC-CceeeECC-CCCCCcCCCCC
Confidence            54   35565644 44444443 23445555554

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.53  E-value=6.3e-13  Score=111.46  Aligned_cols=258  Identities=12%  Similarity=0.144  Sum_probs=167.5

Q ss_pred             CCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecce----eccceeeecccccCcEEEEEECCCC--CEEEE
Q 015490          112 DSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGV----KISEKVLSQLENVGQQLALTFDSEG--TIFAA  184 (406)
Q Consensus       112 h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~  184 (406)
                      ..+.+.++.|...|.+|++|. +|.+.++.-+.....+..-...    .+...-+..+.-...|..+.|.+++  ..++.
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            346789999999999999996 5555554332221111111100    1122233334445678899999876  45667


Q ss_pred             eeCCCeEEEEeCCCcce-----------------------------------Eeeee-ccCCceeEEEEccCCCEEEEEe
Q 015490          185 GSENGNLRVFKWPSLEI-----------------------------------ILNES-EAHASVKDLSFSPDGKFLVSLG  228 (406)
Q Consensus       185 ~~~dg~i~vwd~~~~~~-----------------------------------~~~~~-~~~~~i~~~~~s~~~~~l~s~s  228 (406)
                      .+.|.+|++|.+.....                                   .+.+. .|.-.|+++.++.|+..++++.
T Consensus       104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD  183 (433)
T KOG1354|consen  104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD  183 (433)
T ss_pred             ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence            78899999998742110                                   01111 1233688999999998888665


Q ss_pred             CCCCEEEEEcCCCeee---eecccC----CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEE----EEee
Q 015490          229 NRGPGRVWDLASSAVA---TPLAKE----NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRI----RTKQ  297 (406)
Q Consensus       229 ~d~~i~iwd~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~----~~~~  297 (406)
                       |-.|.+|+++-....   .-++.+    -...|++..|+|....     +.+..+..|.|++-|++....-    +.+.
T Consensus       184 -dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn-----~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE  257 (433)
T KOG1354|consen  184 -DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCN-----VFVYSSSKGTIRLCDMRQSALCDAHSKLFE  257 (433)
T ss_pred             -ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHcc-----EEEEecCCCcEEEeechhhhhhcchhhhhc
Confidence             668999998643221   122221    1235788899998875     4556677999999999843211    1111


Q ss_pred             e------------cCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC-CCceEEEEeecccc------------cce---EEE
Q 015490          298 V------------VREPVSSFNVSADGKLLAVGTASGDISIIDS-SSLQVRTAVKKAHL------------GIV---TAL  349 (406)
Q Consensus       298 ~------------~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~------------~~v---~~~  349 (406)
                      .            --..|..+.|+++|+|+++-. --+|++||+ ...+++.++. .|.            ..|   ..+
T Consensus       258 epedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~-vh~~lr~kLc~lYEnD~IfdKFec  335 (433)
T KOG1354|consen  258 EPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYP-VHEYLRSKLCSLYENDAIFDKFEC  335 (433)
T ss_pred             cccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEe-ehHhHHHHHHHHhhccchhheeEE
Confidence            1            114688999999999998754 367999999 4556665554 342            223   478


Q ss_pred             EEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490          350 AFSYDSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       350 ~~sp~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      +|+.++.+++||+....++++++..|..
T Consensus       336 ~~sg~~~~v~TGsy~n~frvf~~~~gsk  363 (433)
T KOG1354|consen  336 SWSGNDSYVMTGSYNNVFRVFNLARGSK  363 (433)
T ss_pred             EEcCCcceEecccccceEEEecCCCCcc
Confidence            9999999999999999999999766543

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=5.6e-13  Score=118.87  Aligned_cols=216  Identities=13%  Similarity=0.185  Sum_probs=158.4

Q ss_pred             ceeeecccccCcEEEEEECCCCCEE-EEeeCCCeEEEEeCCCcceEeeeeccCC--------------------------
Q 015490          158 EKVLSQLENVGQQLALTFDSEGTIF-AAGSENGNLRVFKWPSLEIILNESEAHA--------------------------  210 (406)
Q Consensus       158 ~~~~~~~~~~~~v~~~~~s~~g~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~--------------------------  210 (406)
                      .+.++.+.+....+.+..+|||+|+ |+|...-.|++||+.+....  +..|..                          
T Consensus        42 ieLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~~DR~Ie  119 (703)
T KOG2321|consen   42 IELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQNDRTIE  119 (703)
T ss_pred             HHHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchhhheEeecCceee
Confidence            3456677788888999999999875 56777889999998643211  100100                          


Q ss_pred             ---------------ceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEE
Q 015490          211 ---------------SVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAI  275 (406)
Q Consensus       211 ---------------~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  275 (406)
                                     .-.+++++.-..-|+.++....|+-++++.|+.+..+.... ..+.++..++...      +++.
T Consensus       120 fHak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~-~~lN~v~in~~hg------Lla~  192 (703)
T KOG2321|consen  120 FHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDS-GELNVVSINEEHG------LLAC  192 (703)
T ss_pred             ehhhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEcccccccccccccc-ccceeeeecCccc------eEEe
Confidence                           11233333222234555556678889999999888877543 4578898988876      6788


Q ss_pred             cCCCcEEEEEeCCCceEEEEeeecC-----------CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeeccccc
Q 015490          276 TDRGASIVTWNTTTWKRIRTKQVVR-----------EPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLG  344 (406)
Q Consensus       276 ~~~~~~i~~~d~~~~~~~~~~~~~~-----------~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  344 (406)
                      |+.+|.|-.||.++...+..+....           ..|+++.|+.+|-.+++|+.+|.+.|||+++.+++..-..+...
T Consensus       193 Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~  272 (703)
T KOG2321|consen  193 GTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYEL  272 (703)
T ss_pred             cccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCcc
Confidence            8899999999999877766654332           24899999999999999999999999999999988876655567


Q ss_pred             ceEEEEEcCC--CCeEEEEECCCcEEEEEecCCcCCCCchH
Q 015490          345 IVTALAFSYD--SRALVSASMDSSVRVTVIEDKKKSGGLNL  383 (406)
Q Consensus       345 ~v~~~~~sp~--~~~l~s~s~dg~i~iw~~~~~~~~~~~~~  383 (406)
                      +|..+.|.+.  +..|+|. ....++|||-.+|+....+..
T Consensus       273 pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp  312 (703)
T KOG2321|consen  273 PIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP  312 (703)
T ss_pred             ceeeecccccCCCceEEec-chHHhhhcccccCCceeeccc
Confidence            8999999775  3445543 456799999999988665543

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.51  E-value=7.6e-12  Score=111.59  Aligned_cols=117  Identities=15%  Similarity=0.229  Sum_probs=92.8

Q ss_pred             CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC---CCcEEEE
Q 015490          251 NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA---SGDISII  327 (406)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~---dg~i~i~  327 (406)
                      ..++|.++.|+|+++.    |.++.|-.-..+.++|++. +++..+  ..++=.++-|+|.|++|+.++-   .|.|-||
T Consensus       269 k~GPVhdv~W~~s~~E----F~VvyGfMPAkvtifnlr~-~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvw  341 (566)
T KOG2315|consen  269 KEGPVHDVTWSPSGRE----FAVVYGFMPAKVTIFNLRG-KPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVW  341 (566)
T ss_pred             CCCCceEEEECCCCCE----EEEEEecccceEEEEcCCC-CEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEE
Confidence            4567899999999987    7777788888999999986 444444  4566688999999999998776   5889999


Q ss_pred             ECCCceEEEEeecccccceEEEEEcCCCCeEEEEE------CCCcEEEEEecCCcCC
Q 015490          328 DSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSAS------MDSSVRVTVIEDKKKS  378 (406)
Q Consensus       328 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s------~dg~i~iw~~~~~~~~  378 (406)
                      |..+.+.+..+. .  ..-+-+.|+|||++++|++      -|+.++||++. |..+
T Consensus       342 Dv~n~K~i~~~~-a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l  394 (566)
T KOG2315|consen  342 DVPNRKLIAKFK-A--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLL  394 (566)
T ss_pred             eccchhhccccc-c--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-Ccee
Confidence            999988887774 2  2345689999999999886      46889999984 4443

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.50  E-value=6.4e-12  Score=112.78  Aligned_cols=189  Identities=18%  Similarity=0.193  Sum_probs=152.7

Q ss_pred             CCCCEEEEeeCCCeEEEEeCCCcceEeeeeccC---CceeEEEEc--------------------cCCCEEEEEeCCCCE
Q 015490          177 SEGTIFAAGSENGNLRVFKWPSLEIILNESEAH---ASVKDLSFS--------------------PDGKFLVSLGNRGPG  233 (406)
Q Consensus       177 ~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~i~~~~~s--------------------~~~~~l~s~s~d~~i  233 (406)
                      |...++|....||.+++|+..+++....+....   +...+..|.                    .|-..++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            455789999999999999998887766554322   234445551                    133467778889999


Q ss_pred             EEEEcCCCeeeeecc-cCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCC
Q 015490          234 RVWDLASSAVATPLA-KENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADG  312 (406)
Q Consensus       234 ~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~  312 (406)
                      .+|++..++....+. ..+...+.++.++.+-.      ++.+++.|..+..|+....+..+........+.+++.+|||
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~------ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~  156 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG------CIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDG  156 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccC------ceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCC
Confidence            999999999988887 56677788887777655      56777889999999999999999998888889999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCC-----CCeEEE-EECCCcEEEEEecC
Q 015490          313 KLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYD-----SRALVS-ASMDSSVRVTVIED  374 (406)
Q Consensus       313 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~-----~~~l~s-~s~dg~i~iw~~~~  374 (406)
                      +.+++++  +.|.+||+.+.+.+..+. +|.++|++++|.-+     |.++++ ...+..+.+|-++.
T Consensus       157 ~~l~~as--~~ik~~~~~~kevv~~ft-gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  157 KILLTAS--RQIKVLDIETKEVVITFT-GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             CEEEecc--ceEEEEEccCceEEEEec-CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            9999876  679999999999999996 99999999999876     666654 44566788998865

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.46  E-value=2.8e-09  Score=94.36  Aligned_cols=270  Identities=9%  Similarity=0.010  Sum_probs=161.8

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEec---------CCeEEEEEecccccceeecceecccee
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQ---------NSCRLFEWDEVENTEIRRLGVKISEKV  160 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~---------~~~~i~~~~~~~~~~~~~~~~~~~~~~  160 (406)
                      .++.+|....    +.+.++.....+ ..+ ++||++.++++..         ++-.|-.+|..+.+....+.+++..+.
T Consensus        28 ~v~ViD~~~~----~v~g~i~~G~~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~  101 (352)
T TIGR02658        28 QVYTIDGEAG----RVLGMTDGGFLP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF  101 (352)
T ss_pred             eEEEEECCCC----EEEEEEEccCCC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh
Confidence            4556666552    344555544333 335 9999999888765         444566677777777666655311110


Q ss_pred             eecccccCcEEEEEECCCCCEEEEee-C-CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEc
Q 015490          161 LSQLENVGQQLALTFDSEGTIFAAGS-E-NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDL  238 (406)
Q Consensus       161 ~~~~~~~~~v~~~~~s~~g~~l~~~~-~-dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~  238 (406)
                      .    .......++++|||+++++.. . +..|.+.|+.+++.+..+.-.. ...-...+++..+  +-+.||......+
T Consensus       102 ~----~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~--~~~~Dg~~~~v~~  174 (352)
T TIGR02658       102 L----VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFF--MHCRDGSLAKVGY  174 (352)
T ss_pred             h----ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccE--EEeecCceEEEEe
Confidence            0    112234689999999998765 3 6899999999999887775432 2222223222221  1223443333222


Q ss_pred             CC-Ceee-eecc---cCCcceEEEEEEEc-CCCCceEEEEEEEcCCCcEEEEEeCCCc-----eEEEEeee-------cC
Q 015490          239 AS-SAVA-TPLA---KENDELFASCRFSP-LNNEDYVLYIAAITDRGASIVTWNTTTW-----KRIRTKQV-------VR  300 (406)
Q Consensus       239 ~~-~~~~-~~~~---~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~i~~~d~~~~-----~~~~~~~~-------~~  300 (406)
                      .+ ++.. ....   .........-.|.+ +++.   +|  .+ . .|.|.+.|+...     +....+..       ..
T Consensus       175 d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~---~~--vs-~-eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP  247 (352)
T TIGR02658       175 GTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRL---VW--PT-Y-TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRP  247 (352)
T ss_pred             cCCCceEEeeeeeecCCccccccCCceEcCCCcE---EE--Ee-c-CCeEEEEecCCCcceecceeeeccccccccccCC
Confidence            21 1111 1111   10000011114556 5553   22  22 2 399999996432     22222211       12


Q ss_pred             CCeEEEEEcCCCCEEEEEeC----------CCcEEEEECCCceEEEEeecccccceEEEEEcCCCC-eEEEEE-CCCcEE
Q 015490          301 EPVSSFNVSADGKLLAVGTA----------SGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSR-ALVSAS-MDSSVR  368 (406)
Q Consensus       301 ~~i~~~~~sp~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~s-~dg~i~  368 (406)
                      +.+.-++++|+++.+++...          .+.|.++|..+++.+..+..  ...+..++++||++ +|++.. .++.|.
T Consensus       248 ~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v--G~~~~~iavS~Dgkp~lyvtn~~s~~Vs  325 (352)
T TIGR02658       248 GGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL--GHEIDSINVSQDAKPLLYALSTGDKTLY  325 (352)
T ss_pred             CcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC--CCceeeEEECCCCCeEEEEeCCCCCcEE
Confidence            33445999999998888532          25799999999999999863  45789999999999 777665 578899


Q ss_pred             EEEecCCcCCCCc
Q 015490          369 VTVIEDKKKSGGL  381 (406)
Q Consensus       369 iw~~~~~~~~~~~  381 (406)
                      +.|+.+++.++.+
T Consensus       326 ViD~~t~k~i~~i  338 (352)
T TIGR02658       326 IFDAETGKELSSV  338 (352)
T ss_pred             EEECcCCeEEeee
Confidence            9999999887766

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.43  E-value=2.9e-11  Score=101.63  Aligned_cols=212  Identities=12%  Similarity=0.189  Sum_probs=141.1

Q ss_pred             CCCceEEEEccCCC---eEEEEecCCeEEEEEecccccc-------------eeeccee--------ccceeeec--ccc
Q 015490          113 SDLPYRMAIHPHGD---GIICALQNSCRLFEWDEVENTE-------------IRRLGVK--------ISEKVLSQ--LEN  166 (406)
Q Consensus       113 ~~~v~~~~~sp~~~---~l~~~~~~~~~i~~~~~~~~~~-------------~~~~~~~--------~~~~~~~~--~~~  166 (406)
                      ...|..+.|.+++.   +|+++.+.++++|.+.....+.             +..+.++        ....+.+.  ..|
T Consensus        84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH  163 (433)
T KOG1354|consen   84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH  163 (433)
T ss_pred             hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc
Confidence            35688999998875   5666669999999887554332             0111110        01112222  234


Q ss_pred             cCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcce---EeeeeccCC-----ceeEEEEccC-CCEEEEEeCCCCEEEEE
Q 015490          167 VGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEI---ILNESEAHA-----SVKDLSFSPD-GKFLVSLGNRGPGRVWD  237 (406)
Q Consensus       167 ~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~-----~i~~~~~s~~-~~~l~s~s~d~~i~iwd  237 (406)
                      ...|+++.++.|+..++++ .|=.|.+|+++--..   +..+..+.-     -|++..|+|. .+.++..+..|+|++.|
T Consensus       164 tyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcD  242 (433)
T KOG1354|consen  164 TYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCD  242 (433)
T ss_pred             eeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEee
Confidence            4678999999999988886 467899999863322   222333322     5888999995 45788888999999999


Q ss_pred             cCCCeee----eecccCC-----------cceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeC-CCceEEEEeeecCC
Q 015490          238 LASSAVA----TPLAKEN-----------DELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNT-TTWKRIRTKQVVRE  301 (406)
Q Consensus       238 ~~~~~~~----~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~-~~~~~~~~~~~~~~  301 (406)
                      ++.....    ..+....           -..|..+.|+++|++     +++  .+--+|++||+ ...+++.+.+.|..
T Consensus       243 mR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGry-----ils--RDyltvk~wD~nme~~pv~t~~vh~~  315 (433)
T KOG1354|consen  243 MRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRY-----ILS--RDYLTVKLWDLNMEAKPVETYPVHEY  315 (433)
T ss_pred             chhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcE-----EEE--eccceeEEEeccccCCcceEEeehHh
Confidence            9853221    1111111           123677899999995     332  33478999999 45567777776631


Q ss_pred             ---------------CeEEEEEcCCCCEEEEEeCCCcEEEEECCCc
Q 015490          302 ---------------PVSSFNVSADGKLLAVGTASGDISIIDSSSL  332 (406)
Q Consensus       302 ---------------~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~  332 (406)
                                     .-..++|+-++.++++|+....+++|++..+
T Consensus       316 lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  316 LRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             HHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence                           2246789999999999999999999996543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.43  E-value=2.3e-11  Score=102.26  Aligned_cols=253  Identities=16%  Similarity=0.163  Sum_probs=181.8

Q ss_pred             ccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCE
Q 015490          103 DQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTI  181 (406)
Q Consensus       103 ~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  181 (406)
                      +..+..++||.+.|+....-|...-+++.+ |.+++||.-. +.++-...+          ......+++++.+.++...
T Consensus        14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkr-ds~q~wpsI----------~~~mP~~~~~~~y~~e~~~   82 (404)
T KOG1409|consen   14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKR-DSGQYWPSI----------YHYMPSPCSAMEYVSESRR   82 (404)
T ss_pred             hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEec-cccccCchh----------hhhCCCCceEeeeeccceE
Confidence            456778999999999999999888888887 8999998533 222211111          1123477899999999999


Q ss_pred             EEEeeCCCeEEEEeC----CCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEE
Q 015490          182 FAAGSENGNLRVFKW----PSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFAS  257 (406)
Q Consensus       182 l~~~~~dg~i~vwd~----~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  257 (406)
                      |++|-.+|++.-+.+    +.....+....|...+..+-|+....++++.+.|..+.---.+.+..+..+...      +
T Consensus        83 L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~------~  156 (404)
T KOG1409|consen   83 LYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE------T  156 (404)
T ss_pred             EEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee------c
Confidence            999999999998866    344455666778889999999988889999999976644334444332211100      0


Q ss_pred             EEEEcCCCCceEEEEEEEcCCCcEEEEE--eCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEE
Q 015490          258 CRFSPLNNEDYVLYIAAITDRGASIVTW--NTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVR  335 (406)
Q Consensus       258 ~~~~~~~~~~~~l~~~~~~~~~~~i~~~--d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~  335 (406)
                      .  .....  ..+.....+...+.|...  +...-..+.++.+|.+.+.+++|.|..+.|++|..|..+.+||+...+-+
T Consensus       157 ~--~t~~~--~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~  232 (404)
T KOG1409|consen  157 P--ASALQ--FDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT  232 (404)
T ss_pred             c--CCCCc--eeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce
Confidence            0  00000  011123334444544443  33445678889999999999999999999999999999999999766555


Q ss_pred             EEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490          336 TAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       336 ~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~  376 (406)
                      .....+|...|..+...+--+.|++++.||.|-+|+++...
T Consensus       233 ~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  233 AYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             eeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence            44445899999999888888899999999999999997643

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.38  E-value=1.6e-09  Score=110.56  Aligned_cols=255  Identities=15%  Similarity=0.153  Sum_probs=158.0

Q ss_pred             ceEEEEccCCCeEEEEecCCeEEEEEecccccceeeccee-ccceeeecc--cccCcEEEEEECCCCCEEEEee-CCCeE
Q 015490          116 PYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVK-ISEKVLSQL--ENVGQQLALTFDSEGTIFAAGS-ENGNL  191 (406)
Q Consensus       116 v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~v~~~~~s~~g~~l~~~~-~dg~i  191 (406)
                      ...+++++++..++++..+.-+|+.++.. +.....+... .....-..+  ..-.....++++++++.|+++. .++.|
T Consensus       570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I  648 (1057)
T PLN02919        570 PGKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL  648 (1057)
T ss_pred             CceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence            45788888766566655333366666653 2222221110 000000000  0112357889999887666554 45789


Q ss_pred             EEEeCCCcceEeeeecc-----------------CCceeEEEEcc-CCCEEEEEeCCCCEEEEEcCCCeeeeecc-----
Q 015490          192 RVFKWPSLEIILNESEA-----------------HASVKDLSFSP-DGKFLVSLGNRGPGRVWDLASSAVATPLA-----  248 (406)
Q Consensus       192 ~vwd~~~~~~~~~~~~~-----------------~~~i~~~~~s~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-----  248 (406)
                      +++|+.++... .+.+.                 -....+++++| ++..+++.+.++.|++||..++.......     
T Consensus       649 r~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~  727 (1057)
T PLN02919        649 REIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER  727 (1057)
T ss_pred             EEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence            99998765432 22110                 01246799999 55566666778899999997765432100     


Q ss_pred             ---c-----CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeee-------------c--------
Q 015490          249 ---K-----ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQV-------------V--------  299 (406)
Q Consensus       249 ---~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~-------------~--------  299 (406)
                         .     ..-.....++++|++..     +.++...++.|++||+.++.......+             .        
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~-----LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~  802 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKE-----LYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVL  802 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCE-----EEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhh
Confidence               0     00112456899999885     334556788999999987653211100             0        


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecc------------cccceEEEEEcCCCCeEEEEECCCcE
Q 015490          300 REPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKA------------HLGIVTALAFSYDSRALVSASMDSSV  367 (406)
Q Consensus       300 ~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------~~~~v~~~~~sp~~~~l~s~s~dg~i  367 (406)
                      -.....++++++|+.+++-..++.|++||..++........+            .-.....++++++|+.+++-+.+++|
T Consensus       803 l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~I  882 (1057)
T PLN02919        803 LQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLI  882 (1057)
T ss_pred             ccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEE
Confidence            012368899999998888888999999999877655333111            11246789999999998988899999


Q ss_pred             EEEEecCCcC
Q 015490          368 RVTVIEDKKK  377 (406)
Q Consensus       368 ~iw~~~~~~~  377 (406)
                      ++||+.+++.
T Consensus       883 rvid~~~~~~  892 (1057)
T PLN02919        883 RYLDLNKGEA  892 (1057)
T ss_pred             EEEECCCCcc
Confidence            9999988764

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=8.9e-10  Score=101.54  Aligned_cols=196  Identities=10%  Similarity=0.056  Sum_probs=125.6

Q ss_pred             CcEEEEEECCCCCE-EEEeeC---CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEe-C--CCCEEEEEcCC
Q 015490          168 GQQLALTFDSEGTI-FAAGSE---NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLG-N--RGPGRVWDLAS  240 (406)
Q Consensus       168 ~~v~~~~~s~~g~~-l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s-~--d~~i~iwd~~~  240 (406)
                      +......|||||+. ++..+.   +..|+++|+.+++.... ....+......|+|||+.++... .  +..|.++|+.+
T Consensus       188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l-t~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~  266 (419)
T PRK04043        188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKI-ASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT  266 (419)
T ss_pred             CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEE-ecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence            36678999999984 665433   35799999988865543 33444566788999998776543 2  34688888877


Q ss_pred             CeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC
Q 015490          241 SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA  320 (406)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~  320 (406)
                      ++... +..... ......|+|+++.   ++++........|+++|+.+++..+.... ..  ....|||||++|+....
T Consensus       267 g~~~~-LT~~~~-~d~~p~~SPDG~~---I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPDG~~Ia~~~~  338 (419)
T PRK04043        267 KTLTQ-ITNYPG-IDVNGNFVEDDKR---IVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NNSSVSTYKNYIVYSSR  338 (419)
T ss_pred             CcEEE-cccCCC-ccCccEECCCCCE---EEEEECCCCCceEEEEECCCCCeEeCccC-CC--cCceECCCCCEEEEEEc
Confidence            76433 332222 2335689999986   33333233344899999988765333221 11  23589999999987765


Q ss_pred             C---------CcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECC-C--cEEEEEecCC
Q 015490          321 S---------GDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMD-S--SVRVTVIEDK  375 (406)
Q Consensus       321 d---------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d-g--~i~iw~~~~~  375 (406)
                      .         ..|.+.|+.++.... +...  .......|+|||+.++..+.+ +  .+.+.++...
T Consensus       339 ~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~--~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        339 ETNNEFGKNTFNLYLISTNSDYIRR-LTAN--GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             CCCcccCCCCcEEEEEECCCCCeEE-CCCC--CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence            3         368888998876543 3212  233468999999988766543 2  3556666443

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=1.2e-09  Score=100.67  Aligned_cols=196  Identities=12%  Similarity=0.084  Sum_probs=124.2

Q ss_pred             CceEEEEccCCCe-EEEEe-c-CCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEe-eC--C
Q 015490          115 LPYRMAIHPHGDG-IICAL-Q-NSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAG-SE--N  188 (406)
Q Consensus       115 ~v~~~~~sp~~~~-l~~~~-~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~--d  188 (406)
                      ......|+|||+. ++..+ . +.-.||.++..+++...          +.  ...+......|||||+.++.. +.  +
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~----------lt--~~~g~~~~~~~SPDG~~la~~~~~~g~  256 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK----------IA--SSQGMLVVSDVSKDGSKLLLTMAPKGQ  256 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE----------Ee--cCCCcEEeeEECCCCCEEEEEEccCCC
Confidence            7788999999985 55444 3 45689998876543221          11  133445567899999877654 32  3


Q ss_pred             CeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCC-C--CEEEEEcCCCeeeeecccCCcceEEEEEEEcCCC
Q 015490          189 GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNR-G--PGRVWDLASSAVATPLAKENDELFASCRFSPLNN  265 (406)
Q Consensus       189 g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (406)
                      ..|.++|+.+++.. .+..+........|+|||+.|+..+.. +  .|.+.|+.+++..+......  .  ...|+|+++
T Consensus       257 ~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~--~--~~~~SPDG~  331 (419)
T PRK04043        257 PDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK--N--NSSVSTYKN  331 (419)
T ss_pred             cEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC--c--CceECCCCC
Confidence            57888898777643 344333333456899999988877642 2  58888888777644332211  1  248999999


Q ss_pred             CceEEEEEEEcC------CCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCc
Q 015490          266 EDYVLYIAAITD------RGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAS---GDISIIDSSSL  332 (406)
Q Consensus       266 ~~~~l~~~~~~~------~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d---g~i~i~d~~~~  332 (406)
                      .  +++ +....      ....|.+.|+.++.. ..+... .......|+|||+.|+....+   ..+.++++...
T Consensus       332 ~--Ia~-~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        332 Y--IVY-SSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             E--EEE-EEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence            6  222 22111      114789999988764 334333 233468999999988877653   23667777643

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.35  E-value=3.7e-10  Score=93.21  Aligned_cols=268  Identities=19%  Similarity=0.175  Sum_probs=167.4

Q ss_pred             EEEEecCCCCccccceeEEecCCCCceEEEEcc---CCCeEEE-E-ecCCeEEEEEecccccceeecceeccceeeeccc
Q 015490           91 LSHFDFASNSLSDQPVAELRTDSDLPYRMAIHP---HGDGIIC-A-LQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE  165 (406)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp---~~~~l~~-~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (406)
                      ++.++.+.....+ ........+..+..|.|..   +|.+... + ..+.+.++..+.....  .         .++.+.
T Consensus        48 l~Lys~~d~~~~~-l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss--~---------~L~~ls  115 (339)
T KOG0280|consen   48 LHLYSLEDMKLSP-LDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESS--V---------HLRGLS  115 (339)
T ss_pred             eEEEeecccccCc-cceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceee--e---------eecccc
Confidence            3444444444433 2222233455667777763   4442222 2 3677777766543211  0         111111


Q ss_pred             cc----CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcce--EeeeeccCCceeEEEEcc-CCCEEEEEeCCCCEEEEEc
Q 015490          166 NV----GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEI--ILNESEAHASVKDLSFSP-DGKFLVSLGNRGPGRVWDL  238 (406)
Q Consensus       166 ~~----~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~iwd~  238 (406)
                      ..    ....++.|++.+..++++..+|.+.+-+......  ++....|.-+++-..|+. +.+.+.+|++|+.+..||+
T Consensus       116 ~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~  195 (339)
T KOG0280|consen  116 SKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDI  195 (339)
T ss_pred             hhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEe
Confidence            11    1356789999999999999999998666544433  336677777888888875 3458899999999999999


Q ss_pred             CC-CeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC-ceEEEEeeecCCCeEEEEEcCC--CCE
Q 015490          239 AS-SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT-WKRIRTKQVVREPVSSFNVSAD--GKL  314 (406)
Q Consensus       239 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~i~~~~~sp~--~~~  314 (406)
                      +. ++.+..-...|...|.++.-+|....     .+++|+.|-.|++||.++ ++++..-.. .+.|..+.++|.  ++.
T Consensus       196 R~p~~~i~~n~kvH~~GV~SI~ss~~~~~-----~I~TGsYDe~i~~~DtRnm~kPl~~~~v-~GGVWRi~~~p~~~~~l  269 (339)
T KOG0280|consen  196 RIPKTFIWHNSKVHTSGVVSIYSSPPKPT-----YIATGSYDECIRVLDTRNMGKPLFKAKV-GGGVWRIKHHPEIFHRL  269 (339)
T ss_pred             cCCcceeeecceeeecceEEEecCCCCCc-----eEEEeccccceeeeehhcccCccccCcc-ccceEEEEecchhhhHH
Confidence            93 33333322334556778888887665     678899999999999984 555555443 377999999994  334


Q ss_pred             EEEEeCCCcEEEEECCCceE----EEEeecccccceEEEEEcCCCCeEEEEE-CCCcEE-EEEecCCcC
Q 015490          315 LAVGTASGDISIIDSSSLQV----RTAVKKAHLGIVTALAFSYDSRALVSAS-MDSSVR-VTVIEDKKK  377 (406)
Q Consensus       315 l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~v~~~~~sp~~~~l~s~s-~dg~i~-iw~~~~~~~  377 (406)
                      |+++-.+| .+|.+......    .......|.+-+..-.|.....+|+||+ .|+.++ +|-.-++..
T Consensus       270 L~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~~  337 (339)
T KOG0280|consen  270 LAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGEP  337 (339)
T ss_pred             HHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCCc
Confidence            44444444 67777654332    2223346777677777755456788876 677755 887666543

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.34  E-value=6.8e-12  Score=125.33  Aligned_cols=226  Identities=15%  Similarity=0.246  Sum_probs=164.2

Q ss_pred             EecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeC
Q 015490          109 LRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE  187 (406)
Q Consensus       109 ~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  187 (406)
                      ++.+-..|.++.=+|...+.++|+ |+.+++|.|.....           ..+.++. +...|+.+.|+.+|+.+..+..
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~-----------v~~~rt~-g~s~vtr~~f~~qGnk~~i~d~ 2271 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQ-----------VVCFRTA-GNSRVTRSRFNHQGNKFGIVDG 2271 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCe-----------EEEeecc-CcchhhhhhhcccCCceeeecc
Confidence            445567889999999999888887 99999999975321           1122222 3478899999999999999999


Q ss_pred             CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEe---CCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCC
Q 015490          188 NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLG---NRGPGRVWDLASSAVATPLAKENDELFASCRFSPLN  264 (406)
Q Consensus       188 dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (406)
                      ||.+.+|.+. .+.......|.....++.|-.  ..+++++   .++.+.+||.--.....-+...|....+++++.|..
T Consensus      2272 dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~ 2348 (2439)
T KOG1064|consen 2272 DGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKH 2348 (2439)
T ss_pred             CCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcc
Confidence            9999999986 555666777777888888865  5677664   578899999643222222223456678899999998


Q ss_pred             CCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeeccccc
Q 015490          265 NEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLG  344 (406)
Q Consensus       265 ~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  344 (406)
                      +      ++.+|+.+|.|++||++..+..++++.         ++ ...++++|+..|.++||++.....+..+...|..
T Consensus      2349 q------llisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak 2412 (2439)
T KOG1064|consen 2349 Q------LLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAK 2412 (2439)
T ss_pred             e------EEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCchhhcc
Confidence            7      577889999999999998776665543         44 5678999999999999999988887777643421


Q ss_pred             c----e--EEEEEcCCCCeEEEEECCCc
Q 015490          345 I----V--TALAFSYDSRALVSASMDSS  366 (406)
Q Consensus       345 ~----v--~~~~~sp~~~~l~s~s~dg~  366 (406)
                      .    .  ..+-.. .+..|.+|+.||+
T Consensus      2413 ~gfFr~~g~Q~~v~-~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2413 QGFFRNIGMQINVG-QCNRIFSCGADGT 2439 (2439)
T ss_pred             cchhhhcCceeeec-cCceEEEecCCCC
Confidence            1    1  112222 2345667777763

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.33  E-value=3.2e-11  Score=103.51  Aligned_cols=173  Identities=13%  Similarity=0.085  Sum_probs=128.0

Q ss_pred             ceeEEEEccCCCEEEEEeCCCCEEEEEcCCCee----eeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEe
Q 015490          211 SVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAV----ATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWN  286 (406)
Q Consensus       211 ~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d  286 (406)
                      ....+..+++++++|++..+....++++.....    ......  ......+.|..+...   ..++-..++...+.+|.
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v--~~~~~ai~~~~~~~s---v~v~dkagD~~~~di~s  138 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV--PKRPTAISFIREDTS---VLVADKAGDVYSFDILS  138 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec--ccCcceeeeeeccce---EEEEeecCCceeeeeec
Confidence            345566788888999988888877887765433    111111  112345556555553   23444455566677777


Q ss_pred             CCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCc
Q 015490          287 TTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSS  366 (406)
Q Consensus       287 ~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~  366 (406)
                      ...+.+ ...-+|-.-++.++|+||+++|+++..|..|++-.......+..+-.||..-|..++.-++ ..|+++|.|++
T Consensus       139 ~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~t  216 (390)
T KOG3914|consen  139 ADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKT  216 (390)
T ss_pred             ccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCc
Confidence            665443 3445777889999999999999999999999999988877777776789999999999865 56899999999


Q ss_pred             EEEEEecCCcCCCCchHHHHHHHH
Q 015490          367 VRVTVIEDKKKSGGLNLWIIIFIL  390 (406)
Q Consensus       367 i~iw~~~~~~~~~~~~~~~~~~~~  390 (406)
                      |++||+.+++.+..+++-.+...+
T Consensus       217 lr~Wd~~sgk~L~t~dl~s~~~~i  240 (390)
T KOG3914|consen  217 LRLWDITSGKLLDTCDLSSLVIPI  240 (390)
T ss_pred             EEEEecccCCcccccchhHhhhhc
Confidence            999999999999999886644433

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=4.9e-10  Score=100.09  Aligned_cols=236  Identities=11%  Similarity=0.152  Sum_probs=143.5

Q ss_pred             eEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeC---------
Q 015490          117 YRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE---------  187 (406)
Q Consensus       117 ~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~---------  187 (406)
                      +-+.|||.|.+|++---..+.+|-  ....            ..++.+. |..|.-+.|||..+||++=+.         
T Consensus       214 tyv~wSP~GTYL~t~Hk~GI~lWG--G~~f------------~r~~RF~-Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d  278 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQGIALWG--GESF------------DRIQRFY-HPGVQFIDFSPNEKYLVTYSPEPIIVEEDD  278 (698)
T ss_pred             eeEEecCCceEEEEEeccceeeec--CccH------------HHHHhcc-CCCceeeecCCccceEEEecCCccccCccc
Confidence            578999999999988777778863  2211            1222232 456888999999999998543         


Q ss_pred             --CCeEEEEeCCCcceEeeeeccCC--c-eeEEEEccCCCEEEEEeCCCCEEEEEcCCC---------------------
Q 015490          188 --NGNLRVFKWPSLEIILNESEAHA--S-VKDLSFSPDGKFLVSLGNRGPGRVWDLASS---------------------  241 (406)
Q Consensus       188 --dg~i~vwd~~~~~~~~~~~~~~~--~-i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~---------------------  241 (406)
                        ...++|||+.+|.....+.....  . -.-+.||.|++++|....+ +|.||+..+-                     
T Consensus       279 ~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~  357 (698)
T KOG2314|consen  279 NEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPT  357 (698)
T ss_pred             CCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCC
Confidence              25799999999987766654222  2 2235677777777765543 4555543211                     


Q ss_pred             --------------------------eeeeeccc----------------------------------------------
Q 015490          242 --------------------------AVATPLAK----------------------------------------------  249 (406)
Q Consensus       242 --------------------------~~~~~~~~----------------------------------------------  249 (406)
                                                +.++.-..                                              
T Consensus       358 ~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI  437 (698)
T KOG2314|consen  358 SNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI  437 (698)
T ss_pred             cceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC
Confidence                                      00000000                                              


Q ss_pred             -----CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC----ceEEEEeeecCCCeEEEEEcCCCCEEEEEe-
Q 015490          250 -----ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT----WKRIRTKQVVREPVSSFNVSADGKLLAVGT-  319 (406)
Q Consensus       250 -----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~----~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-  319 (406)
                           .-...+-..+|-|.|.+   ..++.......++.+|...+    .+.+..+.  ....+.+.|+|.|++++++. 
T Consensus       438 pve~velke~vi~FaWEP~gdk---F~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l  512 (698)
T KOG2314|consen  438 PVEVVELKESVIAFAWEPHGDK---FAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAAL  512 (698)
T ss_pred             CceeeecchheeeeeeccCCCe---EEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEe
Confidence                 01122334566677765   22222223345666666552    12233332  24567899999999998764 


Q ss_pred             --CCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEEC------CCcEEEEEecC
Q 015490          320 --ASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASM------DSSVRVTVIED  374 (406)
Q Consensus       320 --~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~------dg~i~iw~~~~  374 (406)
                        ..|.+.++|+........-...| ...+.+.|.|.|+|++|++.      |..-++|++..
T Consensus       513 ~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG  574 (698)
T KOG2314|consen  513 VSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG  574 (698)
T ss_pred             cccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence              47889999998433322221124 34678999999999999874      44567777653

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.33  E-value=9.1e-11  Score=111.97  Aligned_cols=195  Identities=15%  Similarity=0.206  Sum_probs=145.0

Q ss_pred             CCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccC-----cEEEEEECCCCCEEEEeeC
Q 015490          114 DLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVG-----QQLALTFDSEGTIFAAGSE  187 (406)
Q Consensus       114 ~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~s~~g~~l~~~~~  187 (406)
                      +.+....+.-+...++.+. ++.+.+|++..  ...            +....+..     ...-+.++++.-++++|+.
T Consensus        88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~--~~~------------~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv  153 (967)
T KOG0974|consen   88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKN--SSV------------LSKIQSDERCTLYSSLIIGDSAEELYIASGSV  153 (967)
T ss_pred             ccccccchhhhcceEEEEEcCceEEEEeccc--Cce------------ehhcCCCceEEEEeEEEEeccCcEEEEEeccc
Confidence            3344444444555666654 66655555442  222            22222221     2233456778889999999


Q ss_pred             CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCc
Q 015490          188 NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNED  267 (406)
Q Consensus       188 dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (406)
                      -+.|.+|+....+....+.+|.+.|.++.|+.||+++++.|+|.++++|++.+.+........|...+..+.|.|+ .  
T Consensus       154 ~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~--  230 (967)
T KOG0974|consen  154 FGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-R--  230 (967)
T ss_pred             cccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-e--
Confidence            9999999987444444688999999999999999999999999999999999988877555567778889999997 2  


Q ss_pred             eEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC-CCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 015490          268 YVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR-EPVSSFNVSADGKLLAVGTASGDISIIDSSS  331 (406)
Q Consensus       268 ~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~  331 (406)
                           +.+.+.|.+.++|+.+. +.+..+..|. ..+..++.+++...+++++.|+.+++||+..
T Consensus       231 -----i~t~gedctcrvW~~~~-~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  231 -----IITVGEDCTCRVWGVNG-TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             -----eEEeccceEEEEEeccc-ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence                 45668999999997654 4444666664 6789999999999999999999999999853

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.33  E-value=6.8e-09  Score=86.01  Aligned_cols=238  Identities=13%  Similarity=0.111  Sum_probs=137.5

Q ss_pred             EEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCC
Q 015490          119 MAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPS  198 (406)
Q Consensus       119 ~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~  198 (406)
                      ++.+.+|+.||+.-|..+.|..-..+-...+.+..+        .-.....-+.++||||+.+||.+...|+|++||+..
T Consensus         3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqV--------pkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g   74 (282)
T PF15492_consen    3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQV--------PKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG   74 (282)
T ss_pred             eeecCCCcEEEEEeccEEEEEeccCCchheeEEEec--------CCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc
Confidence            567889999998888888876544322222122111        111223356899999999999999999999999864


Q ss_pred             cceEeeeeccC-------CceeEEEEccC------CCEEEEEeCCCCEEEEEcCCC-----eeee--ecccCCcceEEEE
Q 015490          199 LEIILNESEAH-------ASVKDLSFSPD------GKFLVSLGNRGPGRVWDLASS-----AVAT--PLAKENDELFASC  258 (406)
Q Consensus       199 ~~~~~~~~~~~-------~~i~~~~~s~~------~~~l~s~s~d~~i~iwd~~~~-----~~~~--~~~~~~~~~~~~~  258 (406)
                      .. +..+....       ..|..+.|.+.      ...|++...+|.++-|-+..+     +...  .+..+....+.++
T Consensus        75 ~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~  153 (282)
T PF15492_consen   75 SE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSA  153 (282)
T ss_pred             ce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEE
Confidence            33 33333222       26777777542      125777888888887775322     2222  2333445568899


Q ss_pred             EEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEE---cCCCCEEEEEeCCC------cEEEEEC
Q 015490          259 RFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNV---SADGKLLAVGTASG------DISIIDS  329 (406)
Q Consensus       259 ~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~---sp~~~~l~~~~~dg------~i~i~d~  329 (406)
                      .|+|..+    |+ ++.|.....-...           ......+++-..   +|..+. ++...|+      +..+|.+
T Consensus       154 vy~p~h~----LL-lVgG~~~~~~~~s-----------~a~~~GLtaWRiL~~~Pyyk~-v~~~~~~~~~~~~~~~~~~~  216 (282)
T PF15492_consen  154 VYHPKHR----LL-LVGGCEQNQDGMS-----------KASSCGLTAWRILSDSPYYKQ-VTSSEDDITASSKRRGLLRI  216 (282)
T ss_pred             EEcCCCC----EE-EEeccCCCCCccc-----------cccccCceEEEEcCCCCcEEE-ccccCccccccccccceeec
Confidence            9999886    22 2333333210000           001111111111   111111 1111111      1123333


Q ss_pred             CCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCchH
Q 015490          330 SSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLNL  383 (406)
Q Consensus       330 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~  383 (406)
                      -+.+..... ......|..|..||||..||+...+|.|.+|++.+-+..+++.+
T Consensus       217 ~~~~~fs~~-~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~  269 (282)
T PF15492_consen  217 PSFKFFSRQ-GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ  269 (282)
T ss_pred             cceeeeecc-ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence            333222221 13456799999999999999999999999999998777666543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.31  E-value=8.2e-09  Score=90.83  Aligned_cols=174  Identities=17%  Similarity=0.138  Sum_probs=122.0

Q ss_pred             CCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCC-eEEEEeCCCcceE
Q 015490          124 HGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENG-NLRVFKWPSLEII  202 (406)
Q Consensus       124 ~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg-~i~vwd~~~~~~~  202 (406)
                      +|.+++..+.+..-|  .+...+             ..-.+.+.+.|.-..+..+++-++.|..|| .+-|+|.++++..
T Consensus       331 ~Gd~ia~VSRGkaFi--~~~~~~-------------~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k  395 (668)
T COG4946         331 NGDYIALVSRGKAFI--MRPWDG-------------YSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK  395 (668)
T ss_pred             CCcEEEEEecCcEEE--ECCCCC-------------eeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE
Confidence            577777777665444  333211             122234556788888888888999999999 8999999887654


Q ss_pred             eeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEE
Q 015490          203 LNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASI  282 (406)
Q Consensus       203 ~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i  282 (406)
                       .+...-+.|.++..+++|++++++.....+.+.|+.++..... .......++...|+|+++.  +.|..-.+--...|
T Consensus       396 -r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~i-dkS~~~lItdf~~~~nsr~--iAYafP~gy~tq~I  471 (668)
T COG4946         396 -RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLI-DKSEYGLITDFDWHPNSRW--IAYAFPEGYYTQSI  471 (668)
T ss_pred             -EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEe-cccccceeEEEEEcCCcee--EEEecCcceeeeeE
Confidence             4555666899999999999999999999999999999876443 3344567889999999984  22222223334679


Q ss_pred             EEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEE
Q 015490          283 VTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAV  317 (406)
Q Consensus       283 ~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~  317 (406)
                      +++|+.+++....... .+.-.+.+|.||+++|..
T Consensus       472 klydm~~~Kiy~vTT~-ta~DfsPaFD~d~ryLYf  505 (668)
T COG4946         472 KLYDMDGGKIYDVTTP-TAYDFSPAFDPDGRYLYF  505 (668)
T ss_pred             EEEecCCCeEEEecCC-cccccCcccCCCCcEEEE
Confidence            9999998876554332 233355666777766544

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.30  E-value=2.1e-11  Score=121.92  Aligned_cols=198  Identities=15%  Similarity=0.247  Sum_probs=152.8

Q ss_pred             CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeecc-CCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeee
Q 015490          168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEA-HASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATP  246 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~  246 (406)
                      ..|.++.=+|...+.++|+.||.+++|....++.+..+... ...|+.+.|+.+|+.+..+..||.+.+|.+. .++...
T Consensus      2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s 2287 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTS 2287 (2439)
T ss_pred             CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccceec
Confidence            45677777888889999999999999999888877665433 3589999999999999999999999999986 444444


Q ss_pred             cccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC-ceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 015490          247 LAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT-WKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDIS  325 (406)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~  325 (406)
                      .+.|. ......+|-...     +........++.+.+||..- +..-.....|.+.++++++-|..+.|++|+.+|.|+
T Consensus      2288 ~qchn-k~~~Df~Fi~s~-----~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~ 2361 (2439)
T KOG1064|consen 2288 WQCHN-KALSDFRFIGSL-----LATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVC 2361 (2439)
T ss_pred             cccCC-ccccceeeeehh-----hhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEE
Confidence            44443 334556665522     22334446788999999642 222222278999999999999999999999999999


Q ss_pred             EEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCchH
Q 015490          326 IIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLNL  383 (406)
Q Consensus       326 i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~  383 (406)
                      +||++..+.+..++.          +. ...++++|+..|.++||++.....+..+|.
T Consensus      2362 l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2362 LFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             EeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence            999998877766641          34 457899999999999999999887777764

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.28  E-value=2.7e-08  Score=88.34  Aligned_cols=260  Identities=14%  Similarity=0.130  Sum_probs=166.1

Q ss_pred             EEEEEecCCCCccccceeEEecCCCC--ce-EEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccc
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDL--PY-RMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLEN  166 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~--v~-~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (406)
                      .+..||..+..    .+..+.+-..+  .. -+.|+-+..+++-....++.|+.+ .....          ......++ 
T Consensus       109 ~~~vwd~~sg~----iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~----------~~p~~~lr-  172 (561)
T COG5354         109 NVFVWDIASGM----IVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIE----------EHPFKNLR-  172 (561)
T ss_pred             ceeEEeccCce----eEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccc----------cCchhhcc-
Confidence            45556655532    33333333333  33 567777777766555667777665 21111          11111111 


Q ss_pred             cCcEEEEEECCCC--CEEEE-----eeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEe-----------
Q 015490          167 VGQQLALTFDSEG--TIFAA-----GSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLG-----------  228 (406)
Q Consensus       167 ~~~v~~~~~s~~g--~~l~~-----~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s-----------  228 (406)
                      ...+....|+|.+  ..||+     ....+.+++|.+..+..+....--...=..+.|++.|++|++--           
T Consensus       173 ~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyf  252 (561)
T COG5354         173 PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYF  252 (561)
T ss_pred             ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeeccccee
Confidence            2467788888864  34443     35678999999976654433222122225688999999776431           


Q ss_pred             CCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEE
Q 015490          229 NRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNV  308 (406)
Q Consensus       229 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~  308 (406)
                      .+.+++|++++........  ...++|...+|.|.++.    |.+..|.....+.++|++.. ...  ......=..+.|
T Consensus       253 gesnLyl~~~~e~~i~V~~--~~~~pVhdf~W~p~S~~----F~vi~g~~pa~~s~~~lr~N-l~~--~~Pe~~rNT~~f  323 (561)
T COG5354         253 GESNLYLLRITERSIPVEK--DLKDPVHDFTWEPLSSR----FAVISGYMPASVSVFDLRGN-LRF--YFPEQKRNTIFF  323 (561)
T ss_pred             ccceEEEEeecccccceec--cccccceeeeecccCCc----eeEEecccccceeecccccc-eEE--ecCCcccccccc
Confidence            1356888888743332222  33567899999999997    67777788999999999875 332  233344567899


Q ss_pred             cCCCCEEEEEeC---CCcEEEEECCCceEEE-EeecccccceEEEEEcCCCCeEEEEE------CCCcEEEEEecCCcC
Q 015490          309 SADGKLLAVGTA---SGDISIIDSSSLQVRT-AVKKAHLGIVTALAFSYDSRALVSAS------MDSSVRVTVIEDKKK  377 (406)
Q Consensus       309 sp~~~~l~~~~~---dg~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~s~s------~dg~i~iw~~~~~~~  377 (406)
                      +|.++++++++-   .|.+.+||........ .+. +  ....-+.|+||++++.+..      .|..|.|||+...+.
T Consensus       324 sp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~-~--~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~  399 (561)
T COG5354         324 SPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN-G--LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV  399 (561)
T ss_pred             cCcccEEEEecCCccccceEEeccCCceEEEEEee-c--CCceEeeccCCceEEEecCCCcccccCcceEEEEecCchh
Confidence            999999998776   4789999987655444 443 2  2345678999999987764      578899999976554

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.28  E-value=1.4e-10  Score=110.69  Aligned_cols=196  Identities=12%  Similarity=0.016  Sum_probs=152.2

Q ss_pred             EEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCC----ceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeee
Q 015490          170 QLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHA----SVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT  245 (406)
Q Consensus       170 v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~----~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~  245 (406)
                      +....+.-+.+.++.++.++.+.+||...+.....+.....    ...-+.++++.-++++|+.-+.|.+|+....+...
T Consensus        90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~  169 (967)
T KOG0974|consen   90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI  169 (967)
T ss_pred             ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc
Confidence            34455556777888899999999999987776666544333    12223446677789999999999999987433333


Q ss_pred             ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEE-EeeecCCCeEEEEEcCCCCEEEEEeCCCcE
Q 015490          246 PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIR-TKQVVREPVSSFNVSADGKLLAVGTASGDI  324 (406)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i  324 (406)
                      .+.+| ...+-++.|+-++++      +++.++|..+++|++.+.+... ..-+|...+..++|+|+  .+++++.|.+.
T Consensus       170 ~l~GH-eG~iF~i~~s~dg~~------i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctc  240 (967)
T KOG0974|consen  170 RLKGH-EGSIFSIVTSLDGRY------IASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTC  240 (967)
T ss_pred             eeccc-CCceEEEEEccCCcE------EEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEE
Confidence            45554 445678999999984      5677899999999999988766 66678899999999998  89999999999


Q ss_pred             EEEECCCceEEEEeecccc-cceEEEEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490          325 SIIDSSSLQVRTAVKKAHL-GIVTALAFSYDSRALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       325 ~i~d~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~  376 (406)
                      ++|+.. +..+..+. .|. ..++.++..++...++|++.|+.+++|++....
T Consensus       241 rvW~~~-~~~l~~y~-~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~  291 (967)
T KOG0974|consen  241 RVWGVN-GTQLEVYD-EHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG  291 (967)
T ss_pred             EEEecc-cceehhhh-hhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence            999765 44444664 565 458999999999999999999999999987543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.27  E-value=3.5e-09  Score=93.08  Aligned_cols=226  Identities=15%  Similarity=0.110  Sum_probs=151.4

Q ss_pred             EccCCCeEEEEecCCeEEEEEecccccceeeccee-ccceeeecccccCcEEEEE-ECC-CCCEEEEeeCCCeEEEEeCC
Q 015490          121 IHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVK-ISEKVLSQLENVGQQLALT-FDS-EGTIFAAGSENGNLRVFKWP  197 (406)
Q Consensus       121 ~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~-~s~-~g~~l~~~~~dg~i~vwd~~  197 (406)
                      .+.||+.++....+++.+|+-+...   +.++.+. +.......-..-.+..-+. |++ +|.+++..+. |...|.+..
T Consensus       274 ~nsDGkrIvFq~~GdIylydP~td~---lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~  349 (668)
T COG4946         274 ANSDGKRIVFQNAGDIYLYDPETDS---LEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPW  349 (668)
T ss_pred             cCCCCcEEEEecCCcEEEeCCCcCc---ceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCC
Confidence            3568888888777765555433322   2222221 0000000000001111122 444 6788888875 677777755


Q ss_pred             CcceEeeeeccCCceeEEEEccCCCEEEEEeCCC-CEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEc
Q 015490          198 SLEIILNESEAHASVKDLSFSPDGKFLVSLGNRG-PGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAIT  276 (406)
Q Consensus       198 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  276 (406)
                      .+-.+.  .++...|.-..+..+++-++.|..|| .+-|+|.++++......  .-..+.++..+++|+.      ++.+
T Consensus       350 ~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~--~lg~I~av~vs~dGK~------~vva  419 (668)
T COG4946         350 DGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK--DLGNIEAVKVSPDGKK------VVVA  419 (668)
T ss_pred             CCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC--CccceEEEEEcCCCcE------EEEE
Confidence            443332  34555788888888888899999998 89999998887554433  2335789999999995      4555


Q ss_pred             CCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCC----cEEEEECCCceEEEEeecccccceEEEEEc
Q 015490          277 DRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASG----DISIIDSSSLQVRTAVKKAHLGIVTALAFS  352 (406)
Q Consensus       277 ~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s  352 (406)
                      .....|.++|+.+++....-+...+-|+.+.|||+++++|-+--+|    .|+++|+.+++......  ..+.=.+.+|.
T Consensus       420 Ndr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT--~ta~DfsPaFD  497 (668)
T COG4946         420 NDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT--PTAYDFSPAFD  497 (668)
T ss_pred             cCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC--CcccccCcccC
Confidence            7788999999999887555555567899999999999999887665    59999999888766543  44445677899


Q ss_pred             CCCCeEEEEE
Q 015490          353 YDSRALVSAS  362 (406)
Q Consensus       353 p~~~~l~s~s  362 (406)
                      ||+++|.--+
T Consensus       498 ~d~ryLYfLs  507 (668)
T COG4946         498 PDGRYLYFLS  507 (668)
T ss_pred             CCCcEEEEEe
Confidence            9999886544

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.26  E-value=4.2e-09  Score=87.06  Aligned_cols=201  Identities=14%  Similarity=0.142  Sum_probs=140.7

Q ss_pred             cCcEEEEEECC---CCC-EEEEeeCCCeEEEEeCCCcceEeeeeccCC------ceeEEEEccCCCEEEEEeCCCCEEEE
Q 015490          167 VGQQLALTFDS---EGT-IFAAGSENGNLRVFKWPSLEIILNESEAHA------SVKDLSFSPDGKFLVSLGNRGPGRVW  236 (406)
Q Consensus       167 ~~~v~~~~~s~---~g~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~------~i~~~~~s~~~~~l~s~s~d~~i~iw  236 (406)
                      +..+..+.|..   +|. .++-+..+|.|.++..........+.+-..      ...++.|++.+..++++..+|.+.+-
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v  148 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV  148 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence            35566677753   444 556667789999998765444433333222      24578899999999999999999876


Q ss_pred             EcCCCeeee--ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC-ceEEEE-eeecCCCeEEEEEcC-C
Q 015490          237 DLASSAVAT--PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT-WKRIRT-KQVVREPVSSFNVSA-D  311 (406)
Q Consensus       237 d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~-~~~~~~-~~~~~~~i~~~~~sp-~  311 (406)
                      +........  .++. |.-...-+.|+.....     ++.+|++|+.+..||++. .+.+.. .+.|...|.++.-+| .
T Consensus       149 ~~t~~~le~vq~wk~-He~E~Wta~f~~~~pn-----lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~  222 (339)
T KOG0280|consen  149 YETEMVLEKVQTWKV-HEFEAWTAKFSDKEPN-----LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPK  222 (339)
T ss_pred             ecceeeeeecccccc-cceeeeeeecccCCCc-----eEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCC
Confidence            665544433  4444 3445667888877776     678899999999999993 333333 456778899998887 6


Q ss_pred             CCEEEEEeCCCcEEEEECCC-ceEEEEeecccccceEEEEEcCC--CCeEEEEECCCcEEEEEecCCc
Q 015490          312 GKLLAVGTASGDISIIDSSS-LQVRTAVKKAHLGIVTALAFSYD--SRALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       312 ~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~sp~--~~~l~s~s~dg~i~iw~~~~~~  376 (406)
                      +.+|++|+.|-.|++||.++ ++++..-.  -.+.|+.+.++|.  ++.|+++-.+| .+|-+.+.+.
T Consensus       223 ~~~I~TGsYDe~i~~~DtRnm~kPl~~~~--v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~  287 (339)
T KOG0280|consen  223 PTYIATGSYDECIRVLDTRNMGKPLFKAK--VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKV  287 (339)
T ss_pred             CceEEEeccccceeeeehhcccCccccCc--cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccc
Confidence            88999999999999999985 56666543  5588999999995  33444443333 6677766543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.25  E-value=1.5e-09  Score=96.10  Aligned_cols=246  Identities=14%  Similarity=0.111  Sum_probs=169.6

Q ss_pred             CCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCC---
Q 015490          112 DSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSEN---  188 (406)
Q Consensus       112 h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d---  188 (406)
                      -.-++..++|||.|.+|++..-..+.+|.-....              .+..+ -+..|..+.|||.+++|.+=+..   
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~--------------~l~~~-~~~~V~~~~fSP~~kYL~tw~~~pi~   95 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKA--------------KLVRF-RHPDVKYLDFSPNEKYLVTWSREPII   95 (561)
T ss_pred             cCcchhheeecCcchheehhhccceEEccccchh--------------heeee-ecCCceecccCcccceeeeeccCCcc
Confidence            5567889999999999998877777887544321              11112 34578899999999999986442   


Q ss_pred             ------------CeEEEEeCCCcceEeeeeccCCc--ee-EEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcc
Q 015490          189 ------------GNLRVFKWPSLEIILNESEAHAS--VK-DLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDE  253 (406)
Q Consensus       189 ------------g~i~vwd~~~~~~~~~~~~~~~~--i~-~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~  253 (406)
                                  ..+.+||+.++..+..+.....+  .+ -+.|+-+.+++|-.. ...++|+++...-....+..-...
T Consensus        96 ~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~t~n~~~~p~~~lr~~  174 (561)
T COG5354          96 EPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEITDNIEEHPFKNLRPV  174 (561)
T ss_pred             ChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEecCCccccCchhhcccc
Confidence                        35999999999998887766553  44 688998888777663 447999997322222222222234


Q ss_pred             eEEEEEEEcCCCCceEEEE-EEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC-----------C
Q 015490          254 LFASCRFSPLNNEDYVLYI-AAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA-----------S  321 (406)
Q Consensus       254 ~~~~~~~~~~~~~~~~l~~-~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-----------d  321 (406)
                      .+....|+|.+++..+.++ --..+..+.+++|.+...+.+.+.......-..+.|.+.|++|++-..           .
T Consensus       175 gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfge  254 (561)
T COG5354         175 GILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGE  254 (561)
T ss_pred             ceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceecc
Confidence            5778889998766442222 223456789999999877766665544444468999999998775321           2


Q ss_pred             CcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEE--CCCcEEEEEecCC
Q 015490          322 GDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSAS--MDSSVRVTVIEDK  375 (406)
Q Consensus       322 g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s--~dg~i~iw~~~~~  375 (406)
                      ..++|+++.........  ...++|...+|.|.++.+++++  .+..+.++|++..
T Consensus       255 snLyl~~~~e~~i~V~~--~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N  308 (561)
T COG5354         255 SNLYLLRITERSIPVEK--DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN  308 (561)
T ss_pred             ceEEEEeecccccceec--cccccceeeeecccCCceeEEecccccceeecccccc
Confidence            45888888744433332  4678999999999988776554  6778888888654

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.25  E-value=2.3e-08  Score=100.43  Aligned_cols=201  Identities=16%  Similarity=0.196  Sum_probs=126.4

Q ss_pred             CcEEEEEECCCCCEEEEeeC---C---CeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeC---CCCEEEEEc
Q 015490          168 GQQLALTFDSEGTIFAAGSE---N---GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGN---RGPGRVWDL  238 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~~~---d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~---d~~i~iwd~  238 (406)
                      +.-..++|-.||++||+.+.   .   ..++||+ +.|.....-..-.+--.+++|.|.|++||+...   ...|.+|.-
T Consensus       210 d~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr  288 (928)
T PF04762_consen  210 DGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYS-REGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER  288 (928)
T ss_pred             CCceEEEECCCCcEEEEEEEEcCCCceeEEEEEC-CCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec
Confidence            34567999999999998764   2   4799999 446544333333333467999999999998864   345666664


Q ss_pred             CCCeeeeeccc---CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceE--EEEeeec-CCCeEEEEEcCC-
Q 015490          239 ASSAVATPLAK---ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKR--IRTKQVV-REPVSSFNVSAD-  311 (406)
Q Consensus       239 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~--~~~~~~~-~~~i~~~~~sp~-  311 (406)
                      + |-.-..+..   .....+..+.|++++.-   |   +..-.+ .|.+|-..+..-  ...+... ...+..+.|+|. 
T Consensus       289 N-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~i---L---Av~~~~-~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~  360 (928)
T PF04762_consen  289 N-GLRHGEFTLRFDPEEEKVIELAWNSDSEI---L---AVWLED-RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEK  360 (928)
T ss_pred             C-CcEeeeEecCCCCCCceeeEEEECCCCCE---E---EEEecC-CceEEEeeCCEEEEEEEEEccCCCCCCceEECCCC
Confidence            3 322222221   34556889999999983   2   222223 399998887553  2222222 233455999994 


Q ss_pred             CCEEEEEeCCCcEEEEECC----Cc--------eEEEEee----------------------cccccceEEEEEcCCCCe
Q 015490          312 GKLLAVGTASGDISIIDSS----SL--------QVRTAVK----------------------KAHLGIVTALAFSYDSRA  357 (406)
Q Consensus       312 ~~~l~~~~~dg~i~i~d~~----~~--------~~~~~~~----------------------~~~~~~v~~~~~sp~~~~  357 (406)
                      ...|.+.+.+|.+..++..    .+        ..+..+.                      -....+|.+++|++++..
T Consensus       361 p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~  440 (928)
T PF04762_consen  361 PLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSR  440 (928)
T ss_pred             CCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCe
Confidence            4456666665666554431    11        0111110                      123467999999999888


Q ss_pred             EEEEECCCcEEEEEecCCcC
Q 015490          358 LVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       358 l~s~s~dg~i~iw~~~~~~~  377 (406)
                      +++-..||.|.+|.......
T Consensus       441 ~avl~~d~~l~~~~~~~~~~  460 (928)
T PF04762_consen  441 FAVLTSDGSLSIYEWDLKNM  460 (928)
T ss_pred             EEEEECCCCEEEEEecCCCc
Confidence            99999999999999765443

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.23  E-value=2e-08  Score=88.91  Aligned_cols=223  Identities=17%  Similarity=0.098  Sum_probs=131.6

Q ss_pred             eEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeC----------CCeEEEEeCCCcceEeee
Q 015490          136 CRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE----------NGNLRVFKWPSLEIILNE  205 (406)
Q Consensus       136 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----------dg~i~vwd~~~~~~~~~~  205 (406)
                      .+++.+|..+.+.+..            +.....-..+ +||||+.|+++..          +..|.+||..+.+.+..+
T Consensus        27 ~~v~ViD~~~~~v~g~------------i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i   93 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGM------------TDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADI   93 (352)
T ss_pred             ceEEEEECCCCEEEEE------------EEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEE
Confidence            4666677664443333            2222222334 9999998887754          789999999999988777


Q ss_pred             eccCC-------ceeEEEEccCCCEEEEEe-C-CCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEc
Q 015490          206 SEAHA-------SVKDLSFSPDGKFLVSLG-N-RGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAIT  276 (406)
Q Consensus       206 ~~~~~-------~i~~~~~s~~~~~l~s~s-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  276 (406)
                      .....       ....++++|||++|++.. . +..+.+.|+.+++.+..+.......+  ...+. ...     .+.  
T Consensus        94 ~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~v--y~t~e-~~~-----~~~--  163 (352)
T TIGR02658        94 ELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHI--FPTAN-DTF-----FMH--  163 (352)
T ss_pred             ccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEE--EEecC-Ccc-----EEE--
Confidence            64322       234789999999998776 3 78999999999999888775432221  11111 111     111  


Q ss_pred             CCCcEEEEEeCCC-ce-EEEEeee-cC--CCe-EEEEEcC-CCCEEEEEeCCCcEEEEECCCc-----eEEEEeecc---
Q 015490          277 DRGASIVTWNTTT-WK-RIRTKQV-VR--EPV-SSFNVSA-DGKLLAVGTASGDISIIDSSSL-----QVRTAVKKA---  341 (406)
Q Consensus       277 ~~~~~i~~~d~~~-~~-~~~~~~~-~~--~~i-~~~~~sp-~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~---  341 (406)
                      +.|+......+.. ++ ....... +.  .++ ..-.|.+ +|+++.+..+ |+|.+.|+...     .....+...   
T Consensus       164 ~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~  242 (352)
T TIGR02658       164 CRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKA  242 (352)
T ss_pred             eecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccc
Confidence            1233322222111 11 1111110 00  000 0113455 8888887776 99999996432     222222101   


Q ss_pred             ---cccceEEEEEcCCCCeEEEEE----------CCCcEEEEEecCCcCCCCch
Q 015490          342 ---HLGIVTALAFSYDSRALVSAS----------MDSSVRVTVIEDKKKSGGLN  382 (406)
Q Consensus       342 ---~~~~v~~~~~sp~~~~l~s~s----------~dg~i~iw~~~~~~~~~~~~  382 (406)
                         ..+.+.-++++|+++.++...          ..+.|.++|..+++.++.++
T Consensus       243 ~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~  296 (352)
T TIGR02658       243 DGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE  296 (352)
T ss_pred             cccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe
Confidence               223344599999998887743          12479999999998877654

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.22  E-value=3.5e-09  Score=97.54  Aligned_cols=279  Identities=11%  Similarity=0.076  Sum_probs=170.7

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccc---------cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeE
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSD---------QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCR  137 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~---------~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~  137 (406)
                      ..++++.+|..|        .+.+..++........         ..-+++.||.+.|.-+.|+.+.+.|.++. +|-+.
T Consensus        25 e~gyIAcgG~dG--------lLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIi   96 (1189)
T KOG2041|consen   25 ESGYIACGGADG--------LLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLII   96 (1189)
T ss_pred             cCCeEEeccccc--------eeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEE
Confidence            567777665444        3344555443322211         22357899999999999999888877764 66666


Q ss_pred             EEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEE
Q 015490          138 LFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSF  217 (406)
Q Consensus       138 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~  217 (406)
                      +|-+-.  +.-...         .-.-+..+-|.+++|+.||..++..-.||.|.|=.++..+.-..-. .......+.|
T Consensus        97 VWmlyk--gsW~EE---------MiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeL-kg~~l~hv~w  164 (1189)
T KOG2041|consen   97 VWMLYK--GSWCEE---------MINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKEL-KGQLLAHVLW  164 (1189)
T ss_pred             EEeeec--ccHHHH---------HhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhc-chheccceee
Confidence            665432  211100         1111233568999999999999999999999887775443322111 1113467899


Q ss_pred             ccCCCEEEEEeCCCCEEEEEcCCCe-------eeeeccc---CCcceEEEEEEE--------cCCCCceEEEEEEEcCCC
Q 015490          218 SPDGKFLVSLGNRGPGRVWDLASSA-------VATPLAK---ENDELFASCRFS--------PLNNEDYVLYIAAITDRG  279 (406)
Q Consensus       218 s~~~~~l~s~s~d~~i~iwd~~~~~-------~~~~~~~---~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~  279 (406)
                      ++|.+.++.+-..|.+.+||....-       +.....+   .....+..+.|.        |+.+      .++.+..+
T Consensus       165 s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP------~lavcy~n  238 (1189)
T KOG2041|consen  165 SEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP------RLAVCYAN  238 (1189)
T ss_pred             cccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC------EEEEEEcC
Confidence            9999998888889999999975321       1011100   111124445553        2333      23444556


Q ss_pred             cEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCC---------CcEEEEECCCceEEEEeecccccceEEEE
Q 015490          280 ASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAS---------GDISIIDSSSLQVRTAVKKAHLGIVTALA  350 (406)
Q Consensus       280 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~  350 (406)
                      |.+.+..-.+......+... -.+....|+++|..||+++.+         +.|.+|.. -|..+.+++ .....|++++
T Consensus       239 Gr~QiMR~eND~~Pvv~dtg-m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlk-vpg~~It~ls  315 (1189)
T KOG2041|consen  239 GRMQIMRSENDPEPVVVDTG-MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLK-VPGSCITGLS  315 (1189)
T ss_pred             ceehhhhhcCCCCCeEEecc-cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEe-cCCceeeeeE
Confidence            77776654433222222222 567899999999999998764         24666653 477777775 6677899999


Q ss_pred             EcCCCCeEEEEECCCcEEEEEecCCc
Q 015490          351 FSYDSRALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       351 ~sp~~~~l~s~s~dg~i~iw~~~~~~  376 (406)
                      |-..|-.++.+ .|+.|++=+++..-
T Consensus       316 WEg~gLriA~A-vdsfiyfanIRP~y  340 (1189)
T KOG2041|consen  316 WEGTGLRIAIA-VDSFIYFANIRPEY  340 (1189)
T ss_pred             EcCCceEEEEE-ecceEEEEeecccc
Confidence            98776555543 45666665555433

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.22  E-value=7.8e-09  Score=92.75  Aligned_cols=221  Identities=13%  Similarity=0.204  Sum_probs=144.3

Q ss_pred             ecCCCCceEEEEccCCC-eEEEE-------ecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCC-
Q 015490          110 RTDSDLPYRMAIHPHGD-GIICA-------LQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGT-  180 (406)
Q Consensus       110 ~~h~~~v~~~~~sp~~~-~l~~~-------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-  180 (406)
                      .-|...+..+.+||.+. ..++.       .-..++||.+.........         ..+++- ...-..+.|++-|. 
T Consensus       162 kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~---------a~ksFF-kadkvqm~WN~~gt~  231 (566)
T KOG2315|consen  162 KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPV---------ANKSFF-KADKVQMKWNKLGTA  231 (566)
T ss_pred             eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchh---------hhcccc-ccceeEEEeccCCce
Confidence            34678889999999743 33322       1456788776522111000         001111 11223577887664 


Q ss_pred             EEEEeeC-----------CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEE--eCCCCEEEEEcCCCeeeeec
Q 015490          181 IFAAGSE-----------NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSL--GNRGPGRVWDLASSAVATPL  247 (406)
Q Consensus       181 ~l~~~~~-----------dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~--s~d~~i~iwd~~~~~~~~~~  247 (406)
                      +|+.++.           ..++++++++...+. .-....++|.++.|+|+++.++++  -.-..+.|||++ +.++..+
T Consensus       232 LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~-V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df  309 (566)
T KOG2315|consen  232 LLVLASTDVDKTNASYYGEQTLYLLATQGESVS-VPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF  309 (566)
T ss_pred             EEEEEEEeecCCCccccccceEEEEEecCceEE-EecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC
Confidence            3332221           246888888733333 333446799999999999877665  346689999995 5666666


Q ss_pred             ccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC------C
Q 015490          248 AKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA------S  321 (406)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~------d  321 (406)
                      ...   +-..+-|+|.|+   +++++..|.-.|.|-+||..+.+++..+....  .+-+.|+|||+++++++.      |
T Consensus       310 ~eg---pRN~~~fnp~g~---ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvd  381 (566)
T KOG2315|consen  310 PEG---PRNTAFFNPHGN---IILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVD  381 (566)
T ss_pred             CCC---CccceEECCCCC---EEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEec
Confidence            433   345788999998   46677777888999999999988888887654  467899999999999875      6


Q ss_pred             CcEEEEECCCceEEEEeecccccceEEEEEcC
Q 015490          322 GDISIIDSSSLQVRTAVKKAHLGIVTALAFSY  353 (406)
Q Consensus       322 g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp  353 (406)
                      +.++||+.. |..+....  -......+.|-|
T Consensus       382 Ng~Kiwhyt-G~~l~~~~--f~sEL~qv~W~P  410 (566)
T KOG2315|consen  382 NGIKIWHYT-GSLLHEKM--FKSELLQVEWRP  410 (566)
T ss_pred             CCeEEEEec-Cceeehhh--hhHhHhheeeee
Confidence            789999985 55544432  122567777776

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.22  E-value=2.9e-10  Score=99.92  Aligned_cols=207  Identities=19%  Similarity=0.174  Sum_probs=139.5

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCC-ceeEEEEcc--CCCEEEEEeCCCCEEEEEcCC-C
Q 015490          166 NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHA-SVKDLSFSP--DGKFLVSLGNRGPGRVWDLAS-S  241 (406)
Q Consensus       166 ~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~--~~~~l~s~s~d~~i~iwd~~~-~  241 (406)
                      |.+.|..+.|+..|..|++|+.|..|.+||+..+.....+...|. .|..-.|-|  +.+.+++++.||.+++=.+.. +
T Consensus       141 H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~  220 (559)
T KOG1334|consen  141 HKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETG  220 (559)
T ss_pred             CCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeecccc
Confidence            568899999999999999999999999999998888777765444 777777877  356799999999999876543 2


Q ss_pred             eee-eecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEE--------------------------
Q 015490          242 AVA-TPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIR--------------------------  294 (406)
Q Consensus       242 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~--------------------------  294 (406)
                      .+. ......+...+..++.-|+..+     .+.+++.|+.+.-+|+++..+..                          
T Consensus       221 ~~e~t~rl~~h~g~vhklav~p~sp~-----~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~  295 (559)
T KOG1334|consen  221 YVENTKRLAPHEGPVHKLAVEPDSPK-----PFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTN  295 (559)
T ss_pred             ceecceecccccCccceeeecCCCCC-----cccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcc
Confidence            222 1222334455666777666664     33444555555555554322111                          


Q ss_pred             -----------------------------Eeee------cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC--Cc-----
Q 015490          295 -----------------------------TKQV------VREPVSSFNVSADGKLLAVGTASGDISIIDSS--SL-----  332 (406)
Q Consensus       295 -----------------------------~~~~------~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~--~~-----  332 (406)
                                                   .+..      ..-.|++++|+.++.-|.+...|-.|+++.-.  .+     
T Consensus       296 ~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~  375 (559)
T KOG1334|consen  296 EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDP  375 (559)
T ss_pred             ccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCC
Confidence                                         0100      01257888888777767777777788888432  12     


Q ss_pred             -----eEEEEeeccccc--ceEEEEE-cCCCCeEEEEECCCcEEEEEecCCcC
Q 015490          333 -----QVRTAVKKAHLG--IVTALAF-SYDSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       333 -----~~~~~~~~~~~~--~v~~~~~-sp~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                           .......++|..  .|..+-| -|...|+++||.=|.|.||+-.+++.
T Consensus       376 ~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ei  428 (559)
T KOG1334|consen  376 SSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEI  428 (559)
T ss_pred             CcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHH
Confidence                 222231236754  3666654 67789999999999999999888765

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.16  E-value=1.9e-08  Score=90.89  Aligned_cols=144  Identities=15%  Similarity=0.107  Sum_probs=117.4

Q ss_pred             CCEEEEeeCCCeEEEEeCCCcceEeeee--ccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEE
Q 015490          179 GTIFAAGSENGNLRVFKWPSLEIILNES--EAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFA  256 (406)
Q Consensus       179 g~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~  256 (406)
                      -..++-|...|.|.+|++..++....+.  .|.+.|.++.++.+-..|.+++.|+.+..|+....+..+...... ..+.
T Consensus        70 t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~-~~~~  148 (541)
T KOG4547|consen   70 TSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQK-PLVS  148 (541)
T ss_pred             ceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCC-Cccc
Confidence            3468888899999999999998887776  355699999999998899999999999999999988888777543 3467


Q ss_pred             EEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCC-----CCEEEEEeC-CCcEEEEECC
Q 015490          257 SCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSAD-----GKLLAVGTA-SGDISIIDSS  330 (406)
Q Consensus       257 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~-----~~~l~~~~~-dg~i~i~d~~  330 (406)
                      +++.+|++..      +++  ..+.|.+||+.+.+.+..|.+|.++|+++.|--+     |.++.++.. +.-+.+|-..
T Consensus       149 sl~is~D~~~------l~~--as~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~  220 (541)
T KOG4547|consen  149 SLCISPDGKI------LLT--ASRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE  220 (541)
T ss_pred             eEEEcCCCCE------EEe--ccceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence            8999999873      232  2578999999999999999999999999999876     677766543 4556777654


Q ss_pred             C
Q 015490          331 S  331 (406)
Q Consensus       331 ~  331 (406)
                      .
T Consensus       221 ~  221 (541)
T KOG4547|consen  221 K  221 (541)
T ss_pred             c
Confidence            3

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.16  E-value=7.7e-08  Score=82.30  Aligned_cols=233  Identities=16%  Similarity=0.150  Sum_probs=146.5

Q ss_pred             CceEEEEccCCCeEE-EEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEee-----CC
Q 015490          115 LPYRMAIHPHGDGII-CALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGS-----EN  188 (406)
Q Consensus       115 ~v~~~~~sp~~~~l~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----~d  188 (406)
                      ....++.+|+....+ .+-.-.-.++.+|..++.....+..+    .-+.|.+     ...||+||++|++.-     ..
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~----~gRHFyG-----Hg~fs~dG~~LytTEnd~~~g~   76 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP----PGRHFYG-----HGVFSPDGRLLYTTENDYETGR   76 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC----CCCEEec-----CEEEcCCCCEEEEeccccCCCc
Confidence            345778888555444 44422225666777766655544321    1112222     358999999999863     35


Q ss_pred             CeEEEEeCC-CcceEeeeeccCCceeEEEEccCCCEEEEEeC------------------CCCEEEEEcCCCeeeeeccc
Q 015490          189 GNLRVFKWP-SLEIILNESEAHASVKDLSFSPDGKFLVSLGN------------------RGPGRVWDLASSAVATPLAK  249 (406)
Q Consensus       189 g~i~vwd~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~------------------d~~i~iwd~~~~~~~~~~~~  249 (406)
                      |.|-|||.. +.+.+..+..+.-.-..+.+.|||+.|+++..                  +.++...|..+|+.+.+...
T Consensus        77 G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~L  156 (305)
T PF07433_consen   77 GVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVEL  156 (305)
T ss_pred             EEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeec
Confidence            899999998 55666666666557788999999988887632                  23566677888887766432


Q ss_pred             ---CCcceEEEEEEEcCCCCceEEEEEEEcCC-----CcEEEEEeCCCceEEEEee-------ecCCCeEEEEEcCCCCE
Q 015490          250 ---ENDELFASCRFSPLNNEDYVLYIAAITDR-----GASIVTWNTTTWKRIRTKQ-------VVREPVSSFNVSADGKL  314 (406)
Q Consensus       250 ---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~i~~~d~~~~~~~~~~~-------~~~~~i~~~~~sp~~~~  314 (406)
                         .+...+..+++.+++.-   + +...-..     --.|.+++...  .+..+.       .-.+.+-++++++++.+
T Consensus       157 p~~~~~lSiRHLa~~~~G~V---~-~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~  230 (305)
T PF07433_consen  157 PPDLHQLSIRHLAVDGDGTV---A-FAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRL  230 (305)
T ss_pred             CccccccceeeEEecCCCcE---E-EEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCE
Confidence               23445888888888762   1 1111000     11233333332  122221       12468999999999998


Q ss_pred             EEEEeC-CCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcE
Q 015490          315 LAVGTA-SGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSV  367 (406)
Q Consensus       315 l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i  367 (406)
                      +++.+- .+.+.+||..+++.+....   -..+..++-.+++ +++|.+ .|.+
T Consensus       231 ia~tsPrGg~~~~~d~~tg~~~~~~~---l~D~cGva~~~~~-f~~ssG-~G~~  279 (305)
T PF07433_consen  231 IAVTSPRGGRVAVWDAATGRLLGSVP---LPDACGVAPTDDG-FLVSSG-QGQL  279 (305)
T ss_pred             EEEECCCCCEEEEEECCCCCEeeccc---cCceeeeeecCCc-eEEeCC-CccE
Confidence            877766 6779999999999887763   2346677777766 555544 4543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.15  E-value=1.3e-07  Score=96.79  Aligned_cols=211  Identities=15%  Similarity=0.113  Sum_probs=130.4

Q ss_pred             CCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecc--------cccCcEEEEEECC-CCCEEEE
Q 015490          114 DLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQL--------ENVGQQLALTFDS-EGTIFAA  184 (406)
Q Consensus       114 ~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~v~~~~~s~-~g~~l~~  184 (406)
                      .....+++.+++..|+++....-+|..++..++. +..+..  ........        ..-.....++|+| ++.++++
T Consensus       624 ~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag--~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVa  700 (1057)
T PLN02919        624 NRPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAG--NGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIA  700 (1057)
T ss_pred             CCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEec--cCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEE
Confidence            3478999999988777765322345555543322 211110  00000000        0012346789999 5666677


Q ss_pred             eeCCCeEEEEeCCCcceEeeeecc---------------CCceeEEEEccCCCEEE-EEeCCCCEEEEEcCCCeeeeecc
Q 015490          185 GSENGNLRVFKWPSLEIILNESEA---------------HASVKDLSFSPDGKFLV-SLGNRGPGRVWDLASSAVATPLA  248 (406)
Q Consensus       185 ~~~dg~i~vwd~~~~~~~~~~~~~---------------~~~i~~~~~s~~~~~l~-s~s~d~~i~iwd~~~~~~~~~~~  248 (406)
                      .+.++.|++||..++.... +.+.               -.....++++|+++.|+ +-+.++.|++||+.++.......
T Consensus       701 d~~~~~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~g  779 (1057)
T PLN02919        701 MAGQHQIWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAG  779 (1057)
T ss_pred             ECCCCeEEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEe
Confidence            7778999999987765431 1110               11356799999998555 44567899999998765321110


Q ss_pred             -------------cC-------CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeee----------
Q 015490          249 -------------KE-------NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQV----------  298 (406)
Q Consensus       249 -------------~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~----------  298 (406)
                                   ..       .......+++++++.      +.++...++.|++||..++........          
T Consensus       780 g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~------LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~  853 (1057)
T PLN02919        780 GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ------IYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKA  853 (1057)
T ss_pred             cccccCcccccccCCCCchhhhhccCCceeeEeCCCc------EEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcc
Confidence                         00       001234788999886      334456789999999988765432211          


Q ss_pred             ---cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceE
Q 015490          299 ---VREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQV  334 (406)
Q Consensus       299 ---~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~  334 (406)
                         .-.....++++++|+.+++-+.++.|++||+.+++.
T Consensus       854 ~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        854 LKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             cccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence               112467899999999888888899999999988764

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.14  E-value=2.5e-09  Score=98.47  Aligned_cols=239  Identities=13%  Similarity=0.093  Sum_probs=165.4

Q ss_pred             CceEEEEccCCCeEEEEe-cCCeEEEEEeccccccee-ecceeccceeeeccccc-CcEEEEEECCCCCEEEEeeCCCeE
Q 015490          115 LPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIR-RLGVKISEKVLSQLENV-GQQLALTFDSEGTIFAAGSENGNL  191 (406)
Q Consensus       115 ~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~dg~i  191 (406)
                      ...|++|+....++++|+ +|-+++..++..+..... .+....+-..-+++.+| ..|.-+.|+.+.+.|-+...+|.|
T Consensus        16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlI   95 (1189)
T KOG2041|consen   16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLI   95 (1189)
T ss_pred             eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceE
Confidence            347999999999999998 999999888766432211 11111122333456666 779999999999999999999999


Q ss_pred             EEEeCCCcceEeeeecc--CCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeee-ecccCCcceEEEEEEEcCCCCce
Q 015490          192 RVFKWPSLEIILNESEA--HASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT-PLAKENDELFASCRFSPLNNEDY  268 (406)
Q Consensus       192 ~vwd~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  268 (406)
                      .||-+-.+.........  .+-|.+++|+.||+.++..-.||.|.+=.+...+.-. .+++   .....+.|+++.+.  
T Consensus        96 iVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg---~~l~hv~ws~D~~~--  170 (1189)
T KOG2041|consen   96 IVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG---QLLAHVLWSEDLEQ--  170 (1189)
T ss_pred             EEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch---heccceeecccHHH--
Confidence            99999777654433332  3378999999999999999999998887775443221 2222   22447889999884  


Q ss_pred             EEEEEEEcCCCcEEEEEeCCCc-------eEEEEee----ecCCCeEEEEEc--------CCCCEEEEEeCCCcEEEEEC
Q 015490          269 VLYIAAITDRGASIVTWNTTTW-------KRIRTKQ----VVREPVSSFNVS--------ADGKLLAVGTASGDISIIDS  329 (406)
Q Consensus       269 ~l~~~~~~~~~~~i~~~d~~~~-------~~~~~~~----~~~~~i~~~~~s--------p~~~~l~~~~~dg~i~i~d~  329 (406)
                          +..+-.+|.+.+||.+..       .+.....    .....|..+.|.        ||...++++-.+|.+.|..-
T Consensus       171 ----~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~  246 (1189)
T KOG2041|consen  171 ----ALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRS  246 (1189)
T ss_pred             ----HHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhh
Confidence                333445789999997631       1111111    112235556653        47778999999999998876


Q ss_pred             CCceEEEEeecccccceEEEEEcCCCCeEEEEECC
Q 015490          330 SSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMD  364 (406)
Q Consensus       330 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d  364 (406)
                      .+......+.  ....+..+.|+++|..|+.++.|
T Consensus       247 eND~~Pvv~d--tgm~~vgakWnh~G~vLAvcG~~  279 (1189)
T KOG2041|consen  247 ENDPEPVVVD--TGMKIVGAKWNHNGAVLAVCGND  279 (1189)
T ss_pred             cCCCCCeEEe--cccEeecceecCCCcEEEEccCc
Confidence            6555444443  33678899999999999998865

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.13  E-value=2.7e-10  Score=105.05  Aligned_cols=242  Identities=14%  Similarity=0.181  Sum_probs=159.9

Q ss_pred             CCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeeccccc--CcEEEEEECCCC--CEEEEeeCC
Q 015490          113 SDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV--GQQLALTFDSEG--TIFAAGSEN  188 (406)
Q Consensus       113 ~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~g--~~l~~~~~d  188 (406)
                      .+++.++.++|.|+-++.++...+.+.+++..             ..+.+.+.|.  -.|..+.|+|..  .+-++....
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~gl~i~dld~p-------------~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~   90 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQGLYIIDLDDP-------------FTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSN   90 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcCeEEEeccCC-------------CCCceeeeccCcchhcceecccCCCCceeEEecCc
Confidence            45678899999999999888777666555542             2222233333  346678888754  344444445


Q ss_pred             CeEEEEeCCC---cceEeeeeccCCceeEEEEccCCC-EEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCC
Q 015490          189 GNLRVFKWPS---LEIILNESEAHASVKDLSFSPDGK-FLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLN  264 (406)
Q Consensus       189 g~i~vwd~~~---~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (406)
                      ..-.+|++..   ...-..+-+|..+|+++.|+|+.. .+++++-|-.+..||+++..........-......+.|+-..
T Consensus        91 qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~  170 (1081)
T KOG0309|consen   91 QKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKD  170 (1081)
T ss_pred             chhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccC
Confidence            5566888742   223334456666999999998654 788999999999999998654332221222234568888777


Q ss_pred             CCceEEEEEEEcCCCcEEEEEeCCCc-eEEEEeeecCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCce---------
Q 015490          265 NEDYVLYIAAITDRGASIVTWNTTTW-KRIRTKQVVREPVSSFNVSA-DGKLLAVGTASGDISIIDSSSLQ---------  333 (406)
Q Consensus       265 ~~~~~l~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~i~i~d~~~~~---------  333 (406)
                      ..     ++ ..+....|.+||.+.+ .++..+++|...+..+.|.. ....+.+.+.||+|++||.....         
T Consensus       171 p~-----vl-asshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt  244 (1081)
T KOG0309|consen  171 PN-----VL-ASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT  244 (1081)
T ss_pred             cc-----hh-hhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc
Confidence            65     33 3356788999999865 46777777777777777764 23456777888999999875311         


Q ss_pred             ----------------------------------------------EEEEeecccccceEEEEEcCCC----------Ce
Q 015490          334 ----------------------------------------------VRTAVKKAHLGIVTALAFSYDS----------RA  357 (406)
Q Consensus       334 ----------------------------------------------~~~~~~~~~~~~v~~~~~sp~~----------~~  357 (406)
                                                                    ++..+ .+|...|....|-..+          -.
T Consensus       245 ~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F-~GH~D~V~eFlWR~r~e~~~d~d~rdfQ  323 (1081)
T KOG0309|consen  245 NFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTF-VGHDDVVLEFLWRKRKECDGDYDSRDFQ  323 (1081)
T ss_pred             cCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeee-cCcchHHHHHhhhhcccccCCCCcccee
Confidence                                                          12222 3666666655554321          26


Q ss_pred             EEEEECCCcEEEEEecC
Q 015490          358 LVSASMDSSVRVTVIED  374 (406)
Q Consensus       358 l~s~s~dg~i~iw~~~~  374 (406)
                      |+|-|.|.++++|-+.+
T Consensus       324 LVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  324 LVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             EEEeecCCceEeeeccH
Confidence            89999999999999875

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.13  E-value=7e-07  Score=76.95  Aligned_cols=219  Identities=15%  Similarity=0.168  Sum_probs=136.3

Q ss_pred             eEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEEC-CCCCEEEEeeCCCeEEEEe
Q 015490          117 YRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFD-SEGTIFAAGSENGNLRVFK  195 (406)
Q Consensus       117 ~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~~dg~i~vwd  195 (406)
                      .++.|.+....|+.+.-...+|+.++..++...             .+.... ...+++. +++.++ .+... .+.++|
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-------------~~~~~~-~~G~~~~~~~g~l~-v~~~~-~~~~~d   66 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-------------VIDLPG-PNGMAFDRPDGRLY-VADSG-GIAVVD   66 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEE-------------EEESSS-EEEEEEECTTSEEE-EEETT-CEEEEE
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-------------EEecCC-CceEEEEccCCEEE-EEEcC-ceEEEe
Confidence            367888855555555533347888887543221             111222 6677777 665554 44444 456669


Q ss_pred             CCCcceEeeeec-----cCCceeEEEEccCCCEEEEEeCC--------CCEEEEEcCCCeeeeecccCCcceEEEEEEEc
Q 015490          196 WPSLEIILNESE-----AHASVKDLSFSPDGKFLVSLGNR--------GPGRVWDLASSAVATPLAKENDELFASCRFSP  262 (406)
Q Consensus       196 ~~~~~~~~~~~~-----~~~~i~~~~~s~~~~~l~s~s~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  262 (406)
                      ..+++.......     .....+++++.++|++.++....        |.+..++.. ++.......  -.....++|+|
T Consensus        67 ~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~--~~~pNGi~~s~  143 (246)
T PF08450_consen   67 PDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG--LGFPNGIAFSP  143 (246)
T ss_dssp             TTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE--ESSEEEEEEET
T ss_pred             cCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC--cccccceEECC
Confidence            888765433322     12378999999999977665543        456777776 444333322  23457899999


Q ss_pred             CCCCceEEEEEEEcCCCcEEEEEeCCCce--E--EEEe-eecC--CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEE
Q 015490          263 LNNEDYVLYIAAITDRGASIVTWNTTTWK--R--IRTK-QVVR--EPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVR  335 (406)
Q Consensus       263 ~~~~~~~l~~~~~~~~~~~i~~~d~~~~~--~--~~~~-~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~  335 (406)
                      +++.     +.++.+..+.|..+++....  .  ...+ ....  +..-.+++..+|++.++....+.|.++|.+ ++.+
T Consensus       144 dg~~-----lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~  217 (246)
T PF08450_consen  144 DGKT-----LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLL  217 (246)
T ss_dssp             TSSE-----EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEE
T ss_pred             cchh-----eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEE
Confidence            9985     34455678889999885321  1  1222 1222  237889999999988887788999999987 8888


Q ss_pred             EEeecccccceEEEEEc-CCCCeEEEE
Q 015490          336 TAVKKAHLGIVTALAFS-YDSRALVSA  361 (406)
Q Consensus       336 ~~~~~~~~~~v~~~~~s-p~~~~l~s~  361 (406)
                      ..+.. ....+++++|. ++.+.|+..
T Consensus       218 ~~i~~-p~~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  218 REIEL-PVPRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             EEEE--SSSSEEEEEEESTTSSEEEEE
T ss_pred             EEEcC-CCCCEEEEEEECCCCCEEEEE
Confidence            88763 34589999994 665555443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.11  E-value=2.1e-10  Score=102.41  Aligned_cols=205  Identities=14%  Similarity=0.173  Sum_probs=145.3

Q ss_pred             ccccc-CcEEEEEECCCCCEEEEeeCCCeEEEEeCCC-------cceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEE
Q 015490          163 QLENV-GQQLALTFDSEGTIFAAGSENGNLRVFKWPS-------LEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGR  234 (406)
Q Consensus       163 ~~~~~-~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~-------~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~  234 (406)
                      .+.+| ..|..++--.+.+.+++++.|.+|++|.++.       ..+..++..|..+|.++.|..+-++++++  |+.|+
T Consensus       730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giH  807 (1034)
T KOG4190|consen  730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIH  807 (1034)
T ss_pred             cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcce
Confidence            34344 5677666666677899999999999999853       33666778888899999999988887655  78999


Q ss_pred             EEEcCCCeeeeecc-cCCcceEEEEEEEcC-CCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeee-----cCCCeEEEE
Q 015490          235 VWDLASSAVATPLA-KENDELFASCRFSPL-NNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQV-----VREPVSSFN  307 (406)
Q Consensus       235 iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~-----~~~~i~~~~  307 (406)
                      +||.--++.+..+. .........+..-++ .+.    ++.+.++...+|+++|.+...-...++.     ....+.+++
T Consensus       808 lWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~----iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia  883 (1034)
T KOG4190|consen  808 LWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRH----ILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA  883 (1034)
T ss_pred             eecccccchhHhhhcCcccCCCceeEecccCcch----heeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence            99987777665332 222222333444444 332    3455567788999999998776555543     345688999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEE-EEecCC
Q 015490          308 VSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV-TVIEDK  375 (406)
Q Consensus       308 ~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~i-w~~~~~  375 (406)
                      ..+.|++++.+-.+|.|.+.|.++|+.+..+. .-.-....++ .|..+.|+....|.++.+ |..-++
T Consensus       884 Va~~GN~lAa~LSnGci~~LDaR~G~vINswr-pmecdllqla-apsdq~L~~saldHslaVnWhaldg  950 (1034)
T KOG4190|consen  884 VADKGNKLAAALSNGCIAILDARNGKVINSWR-PMECDLLQLA-APSDQALAQSALDHSLAVNWHALDG  950 (1034)
T ss_pred             eccCcchhhHHhcCCcEEEEecCCCceeccCC-cccchhhhhc-CchhHHHHhhcccceeEeeehhcCC
Confidence            99999999999999999999999999888774 3332333333 345566777677777777 765443

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.10  E-value=4.9e-07  Score=91.01  Aligned_cols=243  Identities=14%  Similarity=0.140  Sum_probs=153.0

Q ss_pred             cCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCC
Q 015490          111 TDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENG  189 (406)
Q Consensus       111 ~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  189 (406)
                      ...+.|.++.+-++...++++. +|.+-+...+......        ..+.+.  .-...|.+++||||+.+|+..+.++
T Consensus        73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~--------~~E~VG--~vd~GI~a~~WSPD~Ella~vT~~~  142 (928)
T PF04762_consen   73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDED--------EIEIVG--SVDSGILAASWSPDEELLALVTGEG  142 (928)
T ss_pred             CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc--------eeEEEE--EEcCcEEEEEECCCcCEEEEEeCCC
Confidence            3457899999999998777775 7776666443321111        011111  1346899999999999999999999


Q ss_pred             eEEEEeCC---------------C--------cceEeeeec------------------------cCCceeEEEEccCCC
Q 015490          190 NLRVFKWP---------------S--------LEIILNESE------------------------AHASVKDLSFSPDGK  222 (406)
Q Consensus       190 ~i~vwd~~---------------~--------~~~~~~~~~------------------------~~~~i~~~~~s~~~~  222 (406)
                      ++.+.+-.               .        |+....+.+                        ....-..++|-.||.
T Consensus       143 ~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~  222 (928)
T PF04762_consen  143 NLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGE  222 (928)
T ss_pred             EEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCc
Confidence            88877521               0        000000000                        112345688999999


Q ss_pred             EEEEEeC---C---CCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEc--CCCcEEEEEeCCCceEEE
Q 015490          223 FLVSLGN---R---GPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAIT--DRGASIVTWNTTTWKRIR  294 (406)
Q Consensus       223 ~l~s~s~---d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~d~~~~~~~~  294 (406)
                      ++|+.+.   .   ..++||+-+ |.....-. .....-.+++|.|.|+-     ++.+.  .....|.+|.-+. -...
T Consensus       223 yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE-~v~gLe~~l~WrPsG~l-----IA~~q~~~~~~~VvFfErNG-Lrhg  294 (928)
T PF04762_consen  223 YFAVSSVEPETGSRRVIRVYSRE-GELQSTSE-PVDGLEGALSWRPSGNL-----IASSQRLPDRHDVVFFERNG-LRHG  294 (928)
T ss_pred             EEEEEEEEcCCCceeEEEEECCC-ceEEeccc-cCCCccCCccCCCCCCE-----EEEEEEcCCCcEEEEEecCC-cEee
Confidence            9998864   2   478999975 55444333 23333457899999983     22222  2345666776543 3333


Q ss_pred             Eeee----cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCce--EEEEeecccccceEEEEEcCC-CCeEEEEECCCcE
Q 015490          295 TKQV----VREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQ--VRTAVKKAHLGIVTALAFSYD-SRALVSASMDSSV  367 (406)
Q Consensus       295 ~~~~----~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~sp~-~~~l~s~s~dg~i  367 (406)
                      .|..    ....|..+.|++|+..||+...|. |.+|-..+..  ....+.-.....+..+.|+|. ...|...+.+|.+
T Consensus       295 eF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~  373 (928)
T PF04762_consen  295 EFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQY  373 (928)
T ss_pred             eEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcE
Confidence            3332    346789999999999999987665 9999988754  233332223344556999995 4457777776777


Q ss_pred             EEEEe
Q 015490          368 RVTVI  372 (406)
Q Consensus       368 ~iw~~  372 (406)
                      ..+++
T Consensus       374 ~~~~~  378 (928)
T PF04762_consen  374 EIYDF  378 (928)
T ss_pred             EEEEE
Confidence            65544

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.10  E-value=5.2e-09  Score=90.21  Aligned_cols=166  Identities=15%  Similarity=0.161  Sum_probs=115.3

Q ss_pred             ceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeC---CCeE
Q 015490          116 PYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE---NGNL  191 (406)
Q Consensus       116 v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~---dg~i  191 (406)
                      +..+..++.+++++++. +....++.++....          ..+..........-+++.|..+......+..   ...+
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~----------~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~  134 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK----------GAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSF  134 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCC----------cceeeeEeecccCcceeeeeeccceEEEEeecCCceee
Confidence            34556677888777776 44444666654321          1122222233334455555555554444444   3445


Q ss_pred             EEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEE
Q 015490          192 RVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY  271 (406)
Q Consensus       192 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  271 (406)
                      .+|....+ +...+.+|-+.+++++|+||+++|+++..|..|++-....--.+..+..+|...|..++.-++.       
T Consensus       135 di~s~~~~-~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-------  206 (390)
T KOG3914|consen  135 DILSADSG-RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-------  206 (390)
T ss_pred             eeeccccc-CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-------
Confidence            55555443 3345678888999999999999999999999999998887777788888888889999888865       


Q ss_pred             EEEEcCCCcEEEEEeCCCceEEEEeeec
Q 015490          272 IAAITDRGASIVTWNTTTWKRIRTKQVV  299 (406)
Q Consensus       272 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~  299 (406)
                      .+.++++|++|++||..+++.+.++...
T Consensus       207 ~LlS~sGD~tlr~Wd~~sgk~L~t~dl~  234 (390)
T KOG3914|consen  207 LLLSGSGDKTLRLWDITSGKLLDTCDLS  234 (390)
T ss_pred             eeeecCCCCcEEEEecccCCcccccchh
Confidence            3578889999999999999988766543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.08  E-value=1.3e-08  Score=85.97  Aligned_cols=248  Identities=12%  Similarity=0.129  Sum_probs=145.9

Q ss_pred             cceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEE
Q 015490          104 QPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFA  183 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  183 (406)
                      ..++....|...|..+-|+-...++++.+-+....|........ ..            .+......+++.+.-  .+..
T Consensus       105 ~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~-lg------------~Y~~~~~~t~~~~d~--~~~f  169 (404)
T KOG1409|consen  105 TFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNR-LG------------GYNFETPASALQFDA--LYAF  169 (404)
T ss_pred             chhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCc-cc------------ceEeeccCCCCceee--EEEE
Confidence            45667778999999999998888888887444345543321111 00            000001111111111  1445


Q ss_pred             EeeCCCeEEEEeC--CCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEE
Q 015490          184 AGSENGNLRVFKW--PSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFS  261 (406)
Q Consensus       184 ~~~~dg~i~vwd~--~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  261 (406)
                      .|...|.|.+..+  ..-..+..+.+|...+.+++|.+..+.|.++..|..+.+||+...+-..-....+...+..+...
T Consensus       170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~  249 (404)
T KOG1409|consen  170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA  249 (404)
T ss_pred             ecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence            5666666666554  34456778888999999999999999999999999999999976554443333344445556555


Q ss_pred             cCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEE-e----------------------------eec-----CCCeEEEE
Q 015490          262 PLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRT-K----------------------------QVV-----REPVSSFN  307 (406)
Q Consensus       262 ~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~-~----------------------------~~~-----~~~i~~~~  307 (406)
                      +..+      .+.+.+.|+.|.+||++..+.... .                            ..|     ...+...+
T Consensus       250 ~~t~------~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c  323 (404)
T KOG1409|consen  250 QHTR------QLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKC  323 (404)
T ss_pred             hhhe------eeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCccc
Confidence            5544      356678899999999975332110 0                            000     01111111


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECC-------CceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490          308 VSADGKLLAVGTASGDISIIDSS-------SLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIED  374 (406)
Q Consensus       308 ~sp~~~~l~~~~~dg~i~i~d~~-------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~  374 (406)
                       +.+.....+-+..-.+|+-|.-       +..++..+...| ..|+.+.+..+-..|+|++.|..|+|||++.
T Consensus       324 -~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~-tgItamhlqetlglLvTsG~~Rvi~iwd~~~  395 (404)
T KOG1409|consen  324 -SSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIK-TGITAMHLQETLGLLVTSGTDRVIKIWDVRS  395 (404)
T ss_pred             -ccCccccccccceeEEEEecccchhhhcCCCCccccccccc-cceeEEEhhhhccceeecCCceEEEEEechh
Confidence             1111111111222234444321       112233332222 3588898888888899999999999999975

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.06  E-value=4.5e-07  Score=83.51  Aligned_cols=228  Identities=13%  Similarity=0.080  Sum_probs=137.3

Q ss_pred             CCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEE-EEECCCCCEEEEeeCCCeEEEEeCCCcceE
Q 015490          124 HGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLA-LTFDSEGTIFAAGSENGNLRVFKWPSLEII  202 (406)
Q Consensus       124 ~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~  202 (406)
                      ++..+++++. ...++-++..+++........            +.+.+ ...  .+..++.++.+|.+..||.++|+.+
T Consensus       104 ~~~~v~v~~~-~g~l~ald~~tG~~~W~~~~~------------~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~  168 (377)
T TIGR03300       104 DGGLVFVGTE-KGEVIALDAEDGKELWRAKLS------------SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERL  168 (377)
T ss_pred             cCCEEEEEcC-CCEEEEEECCCCcEeeeeccC------------ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCcee
Confidence            4556666542 236777887777666553321            11111 111  2446777778999999999999887


Q ss_pred             eeeeccCCce-----eEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCc---ce------E-EEEEEEcCCCCc
Q 015490          203 LNESEAHASV-----KDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKEND---EL------F-ASCRFSPLNNED  267 (406)
Q Consensus       203 ~~~~~~~~~i-----~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~---~~------~-~~~~~~~~~~~~  267 (406)
                      .........+     ...... + ..++.+..++.+..+|.++|+..-.......   ..      + ....+.  +.  
T Consensus       169 W~~~~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~--~~--  242 (377)
T TIGR03300       169 WTYSRVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD--GG--  242 (377)
T ss_pred             eEEccCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE--CC--
Confidence            6654332211     111222 2 4677788889999999999876543321100   00      0 011111  22  


Q ss_pred             eEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceE
Q 015490          268 YVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVT  347 (406)
Q Consensus       268 ~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~  347 (406)
                       .+|+   .+.++.++.+|..+++.+......  ....+.  .++..+++++.+|.+..+|..+++.+............
T Consensus       243 -~vy~---~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~s  314 (377)
T TIGR03300       243 -QVYA---VSYQGRVAALDLRSGRVLWKRDAS--SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLT  314 (377)
T ss_pred             -EEEE---EEcCCEEEEEECCCCcEEEeeccC--CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccc
Confidence             1222   345789999999999877655422  112222  24678888889999999999999877654211111222


Q ss_pred             EEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCch
Q 015490          348 ALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLN  382 (406)
Q Consensus       348 ~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~  382 (406)
                      +...  .+..|++++.+|.|+++|..+++.+.+++
T Consensus       315 sp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~  347 (377)
T TIGR03300       315 APAV--VGGYLVVGDFEGYLHWLSREDGSFVARLK  347 (377)
T ss_pred             cCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence            2222  35688899999999999999998865554

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.03  E-value=5.6e-08  Score=90.63  Aligned_cols=265  Identities=15%  Similarity=0.108  Sum_probs=166.6

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccC-----------CCeEEEEecCCeEEEEEecccccceeecceeccc
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPH-----------GDGIICALQNSCRLFEWDEVENTEIRRLGVKISE  158 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-----------~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  158 (406)
                      .+..+|.-+    .+.++.+..|...|+.+.|.|.           ...+++++|-.++|..||.....           
T Consensus        36 lV~VVDs~s----~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s-----------  100 (1062)
T KOG1912|consen   36 LVSVVDSRS----LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLAS-----------  100 (1062)
T ss_pred             eEEEEehhh----hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhh-----------
Confidence            344455433    5788899999999999999873           23445555555566556554322           


Q ss_pred             eeeeccccc-CcEEEEEECC---CC-CEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEcc-CCCEEEEEeCCCC
Q 015490          159 KVLSQLENV-GQQLALTFDS---EG-TIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSP-DGKFLVSLGNRGP  232 (406)
Q Consensus       159 ~~~~~~~~~-~~v~~~~~s~---~g-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~s~d~~  232 (406)
                       .+..+.++ +++..++|-+   +. ..|+.-....++.+|+..+|+...+....+....|+.+.| |.+.+...+..|.
T Consensus       101 -~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~  179 (1062)
T KOG1912|consen  101 -VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGF  179 (1062)
T ss_pred             -hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCce
Confidence             22223343 6677777765   34 4555656678999999999999988877777788899988 6667777777777


Q ss_pred             EEEEEcCC-------CeeeeecccCCc---------------------c---eEEEEEEEcCCCCceEEEEEEEcCCCcE
Q 015490          233 GRVWDLAS-------SAVATPLAKEND---------------------E---LFASCRFSPLNNEDYVLYIAAITDRGAS  281 (406)
Q Consensus       233 i~iwd~~~-------~~~~~~~~~~~~---------------------~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~  281 (406)
                      +.+.+.-.       ++..+.-..+.+                     .   ....++|+|.-++  ++|++.    ...
T Consensus       180 vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn--~lfi~~----pre  253 (1062)
T KOG1912|consen  180 VLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRN--ILFITF----PRE  253 (1062)
T ss_pred             EEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhc--eEEEEe----ccc
Confidence            77665421       111111111000                     0   0112467787765  555443    678


Q ss_pred             EEEEeCCCceEEEEeeecCCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCceEE----------------EEeecccc
Q 015490          282 IVTWNTTTWKRIRTKQVVREPVSSFNVSADG--KLLAVGTASGDISIIDSSSLQVR----------------TAVKKAHL  343 (406)
Q Consensus       282 i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~--~~l~~~~~dg~i~i~d~~~~~~~----------------~~~~~~~~  343 (406)
                      +.++|++-..++.......+.+.-+.+-|++  ..|++...||.+.+|-.+.....                ..+....+
T Consensus       254 llv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~  333 (1062)
T KOG1912|consen  254 LLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEE  333 (1062)
T ss_pred             eEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechh
Confidence            9999999888888888777767777777765  47889999999999976542111                11110111


Q ss_pred             cceEEEEEcCC-CCeEEEEECCCcEEEEEecCCc
Q 015490          344 GIVTALAFSYD-SRALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       344 ~~v~~~~~sp~-~~~l~s~s~dg~i~iw~~~~~~  376 (406)
                      ..+......|. ...++.--.+|.+.+|.+.+++
T Consensus       334 ~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~r  367 (1062)
T KOG1912|consen  334 FRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGR  367 (1062)
T ss_pred             cccceeecCCCChhhhhhhhhcchhHHHhhhcCC
Confidence            12223333443 3344444467889999998754

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.00  E-value=3.3e-07  Score=75.16  Aligned_cols=186  Identities=12%  Similarity=0.054  Sum_probs=126.1

Q ss_pred             eEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-eEee-
Q 015490          127 GIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLE-IILN-  204 (406)
Q Consensus       127 ~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~-~~~~-  204 (406)
                      .+++..|.++++.+++....+....            . ..-.+.++.+++|++++++.+....|..|.++... .+.. 
T Consensus       131 ~~i~sndht~k~~~~~~~s~~~~~h------------~-~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~  197 (344)
T KOG4532|consen  131 LNIASNDHTGKTMVVSGDSNKFAVH------------N-QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENI  197 (344)
T ss_pred             eeeccCCcceeEEEEecCcccceee------------c-cccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeee
Confidence            4445558999998887653221110            0 11237889999999999999999999999986433 2222 


Q ss_pred             -eeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeee----ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCC
Q 015490          205 -ESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT----PLAKENDELFASCRFSPLNNEDYVLYIAAITDRG  279 (406)
Q Consensus       205 -~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  279 (406)
                       .....+.-.+..|+.....+|++..||++.|||++......    ....++.+.++.+.|++.|.-    =++.....-
T Consensus       198 ~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~l----DLLf~sEhf  273 (344)
T KOG4532|consen  198 YEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLL----DLLFISEHF  273 (344)
T ss_pred             EecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcc----eEEEEecCc
Confidence             22223355789999999999999999999999998755433    234467778999999997753    233334667


Q ss_pred             cEEEEEeCCCceEEEEeeecC--------CCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 015490          280 ASIVTWNTTTWKRIRTKQVVR--------EPVSSFNVSADGKLLAVGTASGDISIIDSS  330 (406)
Q Consensus       280 ~~i~~~d~~~~~~~~~~~~~~--------~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~  330 (406)
                      +.+.+.|+++++....+....        ..|....|+.++..+.+.+++. +.=|++.
T Consensus       274 s~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~-~ae~ni~  331 (344)
T KOG4532|consen  274 SRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ-GAEYNIL  331 (344)
T ss_pred             ceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccchh-hheeecc
Confidence            899999999987665554332        2366677777766666555432 3344443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.00  E-value=4.1e-07  Score=77.93  Aligned_cols=208  Identities=16%  Similarity=0.156  Sum_probs=143.3

Q ss_pred             cEEEEEECC-CCCEEEEeeCCCe-EEEEeCCCcceEeeeeccCC--ceeEEEEccCCCEEEEEe-----CCCCEEEEEcC
Q 015490          169 QQLALTFDS-EGTIFAAGSENGN-LRVFKWPSLEIILNESEAHA--SVKDLSFSPDGKFLVSLG-----NRGPGRVWDLA  239 (406)
Q Consensus       169 ~v~~~~~s~-~g~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~s~s-----~d~~i~iwd~~  239 (406)
                      ....++.+| ++..++.+-.-|+ ..+||..+++....+....+  .--.-.||+||++|++.-     ..|.|-|||..
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~   85 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA   85 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence            345688899 5577777777664 77899999998877655444  233578999999999874     35789999998


Q ss_pred             -CCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcC----------------CCcEEEEEeCCCceEEEEeee----
Q 015490          240 -SSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITD----------------RGASIVTWNTTTWKRIRTKQV----  298 (406)
Q Consensus       240 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~i~~~d~~~~~~~~~~~~----  298 (406)
                       +.+.+..+..+.- ....+.+.|+++.    ++++.++                .+..+.+.|..+++.+.+...    
T Consensus        86 ~~~~ri~E~~s~GI-GPHel~l~pDG~t----LvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~  160 (305)
T PF07433_consen   86 RGYRRIGEFPSHGI-GPHELLLMPDGET----LVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL  160 (305)
T ss_pred             CCcEEEeEecCCCc-ChhhEEEcCCCCE----EEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc
Confidence             5566666664322 2446788999974    2334332                134577788888888777443    


Q ss_pred             cCCCeEEEEEcCCCCEEEEEeCCCc-------EEEEECCCceEEEEee------cccccceEEEEEcCCCCeEEEEE-CC
Q 015490          299 VREPVSSFNVSADGKLLAVGTASGD-------ISIIDSSSLQVRTAVK------KAHLGIVTALAFSYDSRALVSAS-MD  364 (406)
Q Consensus       299 ~~~~i~~~~~sp~~~~l~~~~~dg~-------i~i~d~~~~~~~~~~~------~~~~~~v~~~~~sp~~~~l~s~s-~d  364 (406)
                      |...|..++++++|..++..-..|.       |-+++...  .+..+.      ..-.+.+-+|++++++.++++.| .-
T Consensus       161 ~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG  238 (305)
T PF07433_consen  161 HQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG  238 (305)
T ss_pred             cccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC
Confidence            6678999999999976665544332       44444332  222221      12346789999999998775544 67


Q ss_pred             CcEEEEEecCCcCCCCchH
Q 015490          365 SSVRVTVIEDKKKSGGLNL  383 (406)
Q Consensus       365 g~i~iw~~~~~~~~~~~~~  383 (406)
                      +.+.+||..+++.++..++
T Consensus       239 g~~~~~d~~tg~~~~~~~l  257 (305)
T PF07433_consen  239 GRVAVWDAATGRLLGSVPL  257 (305)
T ss_pred             CEEEEEECCCCCEeecccc
Confidence            8899999999988776553

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.99  E-value=1.1e-08  Score=85.38  Aligned_cols=253  Identities=15%  Similarity=0.178  Sum_probs=154.8

Q ss_pred             CCCceEEEEccCCCeEEEEe-cCCeEEEEEeccccccee---ecce-eccceeeecccccCcEEEEEECCCC--CEEEEe
Q 015490          113 SDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIR---RLGV-KISEKVLSQLENVGQQLALTFDSEG--TIFAAG  185 (406)
Q Consensus       113 ~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~~  185 (406)
                      .+.|+++.|...|.+|++|. +|.+.+|.-....+-+.+   .+.. .+....+..+.-...|..+.|-.++  ..++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            46689999999999999885 454444433222211110   0000 0011122233334567888887655  456666


Q ss_pred             eCCCeEEEEeCCCcc-------------------e------------------E-----eee-eccCCceeEEEEccCCC
Q 015490          186 SENGNLRVFKWPSLE-------------------I------------------I-----LNE-SEAHASVKDLSFSPDGK  222 (406)
Q Consensus       186 ~~dg~i~vwd~~~~~-------------------~------------------~-----~~~-~~~~~~i~~~~~s~~~~  222 (406)
                      +.|.+|++|.+....                   .                  +     +.. ..|.-.|.++.++.|..
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence            789999999873220                   0                  0     001 11222677889988888


Q ss_pred             EEEEEeCCCCEEEEEcCCCee---eeecccCC----cceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceE---
Q 015490          223 FLVSLGNRGPGRVWDLASSAV---ATPLAKEN----DELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKR---  292 (406)
Q Consensus       223 ~l~s~s~d~~i~iwd~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~---  292 (406)
                      .++++. |-.|.+|++.-...   +..++.+.    ...+++..|+|....     +....+..|.|++-|++....   
T Consensus       186 t~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn-----~fmYSsSkG~Ikl~DlRq~alcdn  259 (460)
T COG5170         186 TLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCN-----VFMYSSSKGEIKLNDLRQSALCDN  259 (460)
T ss_pred             eeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcc-----eEEEecCCCcEEehhhhhhhhccC
Confidence            777654 66899998764322   12222221    235778889998765     344456789999999984221   


Q ss_pred             ---EEEe----------eecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCc-eEEEEeeccc------------ccce
Q 015490          293 ---IRTK----------QVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSL-QVRTAVKKAH------------LGIV  346 (406)
Q Consensus       293 ---~~~~----------~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~------------~~~v  346 (406)
                         +...          ..-...|..+.|+++|+++++-+ --+|+|||.+.. .++.++. -|            ...|
T Consensus       260 ~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~-~h~~l~~~l~d~YEnDai  337 (460)
T COG5170         260 SKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIP-MHCDLMDELNDVYENDAI  337 (460)
T ss_pred             chhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeec-hHHHHHHHHHhhhhccce
Confidence               1111          11125688999999999998754 457999998753 4555553 23            2233


Q ss_pred             ---EEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490          347 ---TALAFSYDSRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       347 ---~~~~~sp~~~~l~s~s~dg~i~iw~~~  373 (406)
                         ..+.||.|.+.+++|+..+..-++-+.
T Consensus       338 fdkFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         338 FDKFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             eeeEEEEecCCcccccccccccceeeeccc
Confidence               367899999999999988887777643

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.98  E-value=1.7e-07  Score=87.52  Aligned_cols=237  Identities=13%  Similarity=0.174  Sum_probs=161.5

Q ss_pred             ceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCC------------CEE
Q 015490          116 PYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEG------------TIF  182 (406)
Q Consensus       116 v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g------------~~l  182 (406)
                      -.++.|+|.| .++.|+...+.+  +|..+.            +.++.+++| ..|+.+.|.|..            -+|
T Consensus        18 ~~A~Dw~~~G-LiAygshslV~V--VDs~s~------------q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lli   82 (1062)
T KOG1912|consen   18 RNAADWSPSG-LIAYGSHSLVSV--VDSRSL------------QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLI   82 (1062)
T ss_pred             ccccccCccc-eEEEecCceEEE--Eehhhh------------hhhhccccCccceeEEEeccCCCchhccCccccceeE
Confidence            5688999976 566666655444  665533            344444444 789999998732            257


Q ss_pred             EEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEcc---CC-CEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEE
Q 015490          183 AAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSP---DG-KFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASC  258 (406)
Q Consensus       183 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~---~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  258 (406)
                      |++...|.|.+||+..+..+..+..+.+++.+++|-+   +. ..|+......++.+|+..+|+..-..... .....++
T Consensus        83 AsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys-~~iLs~f  161 (1062)
T KOG1912|consen   83 ASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS-HEILSCF  161 (1062)
T ss_pred             EeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccC-Ccceeee
Confidence            7888899999999998888878877778999999965   34 36677777889999999999887766543 3356678


Q ss_pred             EEEcCCCCceEEEEEEEcCCCcEEEEEeCC-C------ceEEEEeeecCC-------------------------CeEEE
Q 015490          259 RFSPLNNEDYVLYIAAITDRGASIVTWNTT-T------WKRIRTKQVVRE-------------------------PVSSF  306 (406)
Q Consensus       259 ~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~-~------~~~~~~~~~~~~-------------------------~i~~~  306 (406)
                      .+.|....  .+  ... +..|.+.+-+.- .      ++.......|..                         ....+
T Consensus       162 ~~DPfd~r--h~--~~l-~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~f  236 (1062)
T KOG1912|consen  162 RVDPFDSR--HF--CVL-GSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQF  236 (1062)
T ss_pred             eeCCCCcc--eE--EEE-ccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhh
Confidence            88887664  12  222 334555554432 1      122221111110                         11245


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCC--CeEEEEECCCcEEEEEecC
Q 015490          307 NVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDS--RALVSASMDSSVRVTVIED  374 (406)
Q Consensus       307 ~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~s~s~dg~i~iw~~~~  374 (406)
                      +|+|.-+.++.......+.++|++-...+.... -..+.+.-+.|-|++  ..|++...||.+.+|--+.
T Consensus       237 af~p~~rn~lfi~~prellv~dle~~~~l~vvp-ier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  237 AFSPHWRNILFITFPRELLVFDLEYECCLAVVP-IERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             hcChhhhceEEEEeccceEEEcchhhceeEEEE-eccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            678866656666667789999999888888775 456666777888875  4688899999999998765

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.97  E-value=2.9e-09  Score=95.36  Aligned_cols=248  Identities=10%  Similarity=0.076  Sum_probs=162.2

Q ss_pred             cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCCE
Q 015490          104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTI  181 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~  181 (406)
                      -.+..+.||+..|..++--.+.+.+++++ |.++++|.+.....+..       +..+..++. |..+|..+.|-.+-++
T Consensus       726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~-------tsaCQfTY~aHkk~i~~igfL~~lr~  798 (1034)
T KOG4190|consen  726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIG-------TSACQFTYQAHKKPIHDIGFLADLRS  798 (1034)
T ss_pred             eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccc-------cceeeeEhhhccCcccceeeeeccce
Confidence            45668899999999988766666666665 99999998876533211       122333333 4588999999999888


Q ss_pred             EEEeeCCCeEEEEeCCCcceEeeeec--cCCceeEEEEcc--CCCEEEE-EeCCCCEEEEEcCCCeeeeeccc----CCc
Q 015490          182 FAAGSENGNLRVFKWPSLEIILNESE--AHASVKDLSFSP--DGKFLVS-LGNRGPGRVWDLASSAVATPLAK----END  252 (406)
Q Consensus       182 l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~i~~~~~s~--~~~~l~s-~s~d~~i~iwd~~~~~~~~~~~~----~~~  252 (406)
                      ++++  ||-|++||.--++.+.....  .++.+..+..-+  +...+.. ++...+++++|.+..+....++.    ...
T Consensus       799 i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pn  876 (1034)
T KOG4190|consen  799 IASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPN  876 (1034)
T ss_pred             eeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCc
Confidence            8775  78999999876665543322  122333344333  3333433 46788999999998876655432    233


Q ss_pred             ceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEE-EECCC
Q 015490          253 ELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISI-IDSSS  331 (406)
Q Consensus       253 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i-~d~~~  331 (406)
                      ..+++++..+.|+.      ++.+-.+|.|.+.|.++++.+...+.-......++ .|..+.++....|.++.+ |-.-.
T Consensus       877 a~~R~iaVa~~GN~------lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhald  949 (1034)
T KOG4190|consen  877 ALTRAIAVADKGNK------LAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALD  949 (1034)
T ss_pred             hheeEEEeccCcch------hhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcC
Confidence            45789999999985      55666789999999999998877765544444444 355567777777888888 87776


Q ss_pred             ceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEE
Q 015490          332 LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVT  370 (406)
Q Consensus       332 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw  370 (406)
                      +....+.+ ....+..-+  ..-|..|+++.....+.+|
T Consensus       950 gimh~q~k-pppepahfl--qsvgpSLV~a~~Gn~lgVY  985 (1034)
T KOG4190|consen  950 GIMHLQDK-PPPEPAHFL--QSVGPSLVTAQNGNILGVY  985 (1034)
T ss_pred             CeeeeccC-CCCcchhhh--hccCceeEEeccCcEEEEE
Confidence            66555443 222221111  1124556666655556666

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.95  E-value=1.6e-06  Score=74.69  Aligned_cols=199  Identities=18%  Similarity=0.132  Sum_probs=130.3

Q ss_pred             EEEECC-CCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEc-cCCCEEEEEeCCCCEEEEEcCCCeeeeeccc
Q 015490          172 ALTFDS-EGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFS-PDGKFLVSLGNRGPGRVWDLASSAVATPLAK  249 (406)
Q Consensus       172 ~~~~s~-~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  249 (406)
                      ++.|.+ ++.++++-...+.|+.|+..++.... +....  ...+++. +++ .++.+... .+.++|..+++.......
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEEEeec
Confidence            568887 77777777778999999988876543 22222  6777887 665 45555554 566669988865443332


Q ss_pred             ---C-CcceEEEEEEEcCCCCceEEEEEEEcCCC------cEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEE-
Q 015490          250 ---E-NDELFASCRFSPLNNEDYVLYIAAITDRG------ASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVG-  318 (406)
Q Consensus       250 ---~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~-  318 (406)
                         . .......+++.++|+    +|+.......      +.|+.++.. ++....... -.....++|+|+++.|+++ 
T Consensus        79 ~~~~~~~~~~ND~~vd~~G~----ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~-~~~pNGi~~s~dg~~lyv~d  152 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDPDGN----LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG-LGFPNGIAFSPDGKTLYVAD  152 (246)
T ss_dssp             ETTCSCTEEEEEEEE-TTS-----EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE-ESSEEEEEEETTSSEEEEEE
T ss_pred             cCCCcccCCCceEEEcCCCC----EEEEecCCCccccccccceEEECCC-CeEEEEecC-cccccceEECCcchheeecc
Confidence               1 445678899999987    3444443322      778889888 554433333 3456899999999987654 


Q ss_pred             eCCCcEEEEECCCc-e-E--EEEeecccc--cceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCch
Q 015490          319 TASGDISIIDSSSL-Q-V--RTAVKKAHL--GIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLN  382 (406)
Q Consensus       319 ~~dg~i~i~d~~~~-~-~--~~~~~~~~~--~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~  382 (406)
                      +..+.|..+++... . .  ...+.....  +....+++..+|++.++....+.|.+++.+ ++.+..++
T Consensus       153 s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~  221 (246)
T PF08450_consen  153 SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIE  221 (246)
T ss_dssp             TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE
T ss_pred             cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEc
Confidence            55788999998532 1 1  122211122  347799999999988888888999999977 76655443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.95  E-value=2.2e-06  Score=71.35  Aligned_cols=203  Identities=15%  Similarity=0.114  Sum_probs=112.3

Q ss_pred             CceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCC------CEEEEeeC
Q 015490          115 LPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEG------TIFAAGSE  187 (406)
Q Consensus       115 ~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g------~~l~~~~~  187 (406)
                      .=+.++||||+..|+.+. .+++++|++..   ..+..+..  ...  ....-...|..+.|.+-.      ..|++-..
T Consensus        45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g---~~lf~I~p--~~~--~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y  117 (282)
T PF15492_consen   45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMG---SELFVIPP--AMS--FPGDLSDAIAGLIFLEYKKSAQWSYELLVINY  117 (282)
T ss_pred             hheEEEECCCCcEEEEEcCCCeEEEEeccc---ceeEEcCc--ccc--cCCccccceeeeEeeccccccccceeEEEEec
Confidence            347899999999999885 77888876543   22222211  111  111123566777775422      24556677


Q ss_pred             CCeEEEEeCCCc-----ceEe--eeecc-CCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEE
Q 015490          188 NGNLRVFKWPSL-----EIIL--NESEA-HASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCR  259 (406)
Q Consensus       188 dg~i~vwd~~~~-----~~~~--~~~~~-~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  259 (406)
                      +|.++-|-+..+     +...  .+..+ ...|.++.++|..++|++|+....      +++...     .....+++=+
T Consensus       118 ~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~s~-----a~~~GLtaWR  186 (282)
T PF15492_consen  118 RGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGMSK-----ASSCGLTAWR  186 (282)
T ss_pred             cceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcccc-----ccccCceEEE
Confidence            888888776322     2222  22233 238999999999998888875322      000000     0000111111


Q ss_pred             EEcCCCCceEEEEEEEcCCCc------EEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCce
Q 015490          260 FSPLNNEDYVLYIAAITDRGA------SIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQ  333 (406)
Q Consensus       260 ~~~~~~~~~~l~~~~~~~~~~------~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~  333 (406)
                      ...+..+    +..+...++.      +..+|.+-+.+...........|..|..||||+.||+...+|.|.+|++.+.+
T Consensus       187 iL~~~Py----yk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~  262 (282)
T PF15492_consen  187 ILSDSPY----YKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR  262 (282)
T ss_pred             EcCCCCc----EEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence            1111111    1111111111      12233333322222222235679999999999999999999999999999888


Q ss_pred             EEEEee
Q 015490          334 VRTAVK  339 (406)
Q Consensus       334 ~~~~~~  339 (406)
                      ....+.
T Consensus       263 ~~~~W~  268 (282)
T PF15492_consen  263 LQRSWK  268 (282)
T ss_pred             hhcccc
Confidence            777764

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.93  E-value=1.4e-08  Score=82.64  Aligned_cols=149  Identities=13%  Similarity=0.109  Sum_probs=94.4

Q ss_pred             CCCEEEEEeCCCCEEEEEcCCCee-eeecccCCcceEEEEEEEcCCCCceEEEEEEE----cCCCcEEEEEeCCCceEEE
Q 015490          220 DGKFLVSLGNRGPGRVWDLASSAV-ATPLAKENDELFASCRFSPLNNEDYVLYIAAI----TDRGASIVTWNTTTWKRIR  294 (406)
Q Consensus       220 ~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~i~~~d~~~~~~~~  294 (406)
                      .++.++++..||.+.+++.+.-.. ..++...+.... +......++     ++.+.    -..-+..+.|+++..+.+.
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~a-s~~~~~~~~-----~i~s~~~g~~n~~d~~~a~~~~p~~t~~  173 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSA-SRKICRHGN-----SILSGGCGNWNAQDNFYANTLDPIKTLI  173 (319)
T ss_pred             cCCceEecCCCceEEEEechHHHhhhhhccccccccc-ccceeeccc-----EEecCCcceEeeccceeeeccccccccc
Confidence            356799999999999998765211 111111111111 111222222     11110    0112345566665433222


Q ss_pred             EeeecCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcC-CCCeEEEEECCCcEEEEEe
Q 015490          295 TKQVVREPVSSFNVSAD-GKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSY-DSRALVSASMDSSVRVTVI  372 (406)
Q Consensus       295 ~~~~~~~~i~~~~~sp~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~s~dg~i~iw~~  372 (406)
                      .-......+.+++-+|. .+.+++|+.||.+.+||.++......+...|..+++.+-|+| ++..|++++.||.+.-||-
T Consensus       174 ~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wda  253 (319)
T KOG4714|consen  174 PSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDA  253 (319)
T ss_pred             ccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcC
Confidence            22222234889999995 456778888999999999988766666568999999999999 5788999999999999998


Q ss_pred             cC
Q 015490          373 ED  374 (406)
Q Consensus       373 ~~  374 (406)
                      .+
T Consensus       254 s~  255 (319)
T KOG4714|consen  254 ST  255 (319)
T ss_pred             CC
Confidence            73

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.92  E-value=5.1e-08  Score=81.48  Aligned_cols=210  Identities=14%  Similarity=0.210  Sum_probs=135.8

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-e----EeeeeccC------------CceeEEEEccCCC--EEEE
Q 015490          166 NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLE-I----ILNESEAH------------ASVKDLSFSPDGK--FLVS  226 (406)
Q Consensus       166 ~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~-~----~~~~~~~~------------~~i~~~~~s~~~~--~l~s  226 (406)
                      ....|+++.|...|.++++|...|.|.+|.-+... +    ...+..|.            ..|..+.|..++.  .++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            34678999999999999999999999999754322 1    11122222            2578889876543  5777


Q ss_pred             EeCCCCEEEEEcCCCe-------------------ee-----------------------eecccCCcceEEEEEEEcCC
Q 015490          227 LGNRGPGRVWDLASSA-------------------VA-----------------------TPLAKENDELFASCRFSPLN  264 (406)
Q Consensus       227 ~s~d~~i~iwd~~~~~-------------------~~-----------------------~~~~~~~~~~~~~~~~~~~~  264 (406)
                      .+.|.+|++|.+....                   ++                       +.....|...+.+++|+.+.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            8889999999874321                   00                       00111233446677777777


Q ss_pred             CCceEEEEEEEcCCCcEEEEEeCCCceE---EEEeeecC-----CCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCceE-
Q 015490          265 NEDYVLYIAAITDRGASIVTWNTTTWKR---IRTKQVVR-----EPVSSFNVSADG-KLLAVGTASGDISIIDSSSLQV-  334 (406)
Q Consensus       265 ~~~~~l~~~~~~~~~~~i~~~d~~~~~~---~~~~~~~~-----~~i~~~~~sp~~-~~l~~~~~dg~i~i~d~~~~~~-  334 (406)
                      ..       .....+-.|.+|++.-...   +..++.|.     .-|++..|+|.. +.+...+..|.|++-|++.... 
T Consensus       185 et-------~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alc  257 (460)
T COG5170         185 ET-------LLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALC  257 (460)
T ss_pred             he-------eeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhc
Confidence            63       2234678899999864332   22233332     457889999953 4566667799999999984221 


Q ss_pred             -----EEEe---------ecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCc-CCCCchH
Q 015490          335 -----RTAV---------KKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKK-KSGGLNL  383 (406)
Q Consensus       335 -----~~~~---------~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~-~~~~~~~  383 (406)
                           +...         ..+-...|..+.|+++|+++++-+. -+|+|||++..+ ++.++|.
T Consensus       258 dn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~  320 (460)
T COG5170         258 DNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPM  320 (460)
T ss_pred             cCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeech
Confidence                 1110         0122346789999999999987654 579999998654 4555554

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.88  E-value=1.1e-07  Score=85.37  Aligned_cols=179  Identities=19%  Similarity=0.255  Sum_probs=132.9

Q ss_pred             EEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeC-----------CCCEEEEEcC
Q 015490          171 LALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGN-----------RGPGRVWDLA  239 (406)
Q Consensus       171 ~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~-----------d~~i~iwd~~  239 (406)
                      +-+.|||.|.||++-...| |.+|-=.+...++.+  .|..|.-+.|||..++|++-+.           ...++|||++
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF--~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~  290 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF--YHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA  290 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHHHHHhc--cCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence            5689999999999977665 789986666666555  3446899999999999998653           2579999999


Q ss_pred             CCeeeeecccC--CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEE
Q 015490          240 SSAVATPLAKE--NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAV  317 (406)
Q Consensus       240 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~  317 (406)
                      +|...+.+...  ......-..||.++++     ++...  ...|.+|+..+..++..-...-..|....|+|.++.||.
T Consensus       291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy-----~Arm~--~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAY  363 (698)
T KOG2314|consen  291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKY-----FARMT--GNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAY  363 (698)
T ss_pred             ccchhcceeccCCCccccceEEeccCCce-----eEEec--cceEEEEecCceeeecccccCCccccCcccCCCcceEEE
Confidence            99988877652  2223445789999985     33322  367999998876655444444467899999999999987


Q ss_pred             EeC-----CCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEE
Q 015490          318 GTA-----SGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVS  360 (406)
Q Consensus       318 ~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s  360 (406)
                      -+.     -..+.+..+.+++.+++.. -|.-.=..+.|-.+|.+|+.
T Consensus       364 wtpe~~~~parvtL~evPs~~~iRt~n-lfnVsDckLhWQk~gdyLcv  410 (698)
T KOG2314|consen  364 WTPETNNIPARVTLMEVPSKREIRTKN-LFNVSDCKLHWQKSGDYLCV  410 (698)
T ss_pred             EcccccCCcceEEEEecCccceeeecc-ceeeeccEEEeccCCcEEEE
Confidence            554     2458888888888887764 45444457788888998874

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.87  E-value=4.2e-06  Score=77.11  Aligned_cols=173  Identities=16%  Similarity=0.170  Sum_probs=110.9

Q ss_pred             CEEEEeeCCCeEEEEeCCCcceEeeeeccCC----c------e-eEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecc
Q 015490          180 TIFAAGSENGNLRVFKWPSLEIILNESEAHA----S------V-KDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLA  248 (406)
Q Consensus       180 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~----~------i-~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  248 (406)
                      ..++.+..+|.+..+|.++|+.+........    .      + ....+  .+..+++++.++.++.||.++++..-...
T Consensus       191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~  268 (377)
T TIGR03300       191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRD  268 (377)
T ss_pred             CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeec
Confidence            3677788889999999999886654321100    0      0 11112  24578888889999999999998765544


Q ss_pred             cCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeee-cCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 015490          249 KENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQV-VREPVSSFNVSADGKLLAVGTASGDISII  327 (406)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~dg~i~i~  327 (406)
                      ...   .....  ..+..   +|   ..+.++.++.+|..+++.+..... ......+...  .+..|++++.+|.|+++
T Consensus       269 ~~~---~~~p~--~~~~~---vy---v~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~  335 (377)
T TIGR03300       269 ASS---YQGPA--VDDNR---LY---VTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWL  335 (377)
T ss_pred             cCC---ccCce--EeCCE---EE---EECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEE
Confidence            211   11122  22332   22   235789999999999987765532 1122222222  36789999999999999


Q ss_pred             ECCCceEEEEeecccccce-EEEEEcCCCCeEEEEECCCcEEEE
Q 015490          328 DSSSLQVRTAVKKAHLGIV-TALAFSYDSRALVSASMDSSVRVT  370 (406)
Q Consensus       328 d~~~~~~~~~~~~~~~~~v-~~~~~sp~~~~l~s~s~dg~i~iw  370 (406)
                      |..+++.+..+. .+...+ .+..+. + ..|+.++.||.|+.+
T Consensus       336 d~~tG~~~~~~~-~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       336 SREDGSFVARLK-TDGSGIASPPVVV-G-DGLLVQTRDGDLYAF  376 (377)
T ss_pred             ECCCCCEEEEEE-cCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence            999999998876 344332 233333 3 358888999998765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=5.5e-08  Score=85.17  Aligned_cols=250  Identities=12%  Similarity=0.119  Sum_probs=166.7

Q ss_pred             cCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCCEEEEeeC-
Q 015490          111 TDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIFAAGSE-  187 (406)
Q Consensus       111 ~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~-  187 (406)
                      -|.+.|+.+...- .+++..++ |+.++.|.-....+           .+.+..+..+ ..+.+++.+-+|.++++++. 
T Consensus         7 mhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isG-----------vEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~   74 (558)
T KOG0882|consen    7 MHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISG-----------VEFVKHFRAHLGVILSLAVSYDGWLFRSVEDP   74 (558)
T ss_pred             cccceeeeEeeeh-hheEEeeecchhhhhcCCCCccc-----------eeehhhhHHHHHHHHhhhccccceeEeeccCc
Confidence            3667777665543 46677776 99988875432111           1222333333 67888999999999999877 


Q ss_pred             CCeEEEEeCCCcceEeeeeccCCceeEEEE--ccC-CC-EEEEE-eCCCCEEEEEcCCCe-eeeecccCCcceEEEEEEE
Q 015490          188 NGNLRVFKWPSLEIILNESEAHASVKDLSF--SPD-GK-FLVSL-GNRGPGRVWDLASSA-VATPLAKENDELFASCRFS  261 (406)
Q Consensus       188 dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~--s~~-~~-~l~s~-s~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~  261 (406)
                      |..++++|+++-..+.-+....- ...+.|  ++. -. .|++. -.++.+.++|-.... +...+...+..++..+.+.
T Consensus        75 Dhs~KvfDvEn~DminmiKL~~l-Pg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~  153 (558)
T KOG0882|consen   75 DHSVKVFDVENFDMINMIKLVDL-PGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYN  153 (558)
T ss_pred             ccceeEEEeeccchhhhcccccC-CCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEee
Confidence            99999999977654422221111 112223  222 11 33333 357899999987654 3444555667789999999


Q ss_pred             cCCCCceEEEEEEEcCCCcEEEEEeCCC-ce-----E---------EEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 015490          262 PLNNEDYVLYIAAITDRGASIVTWNTTT-WK-----R---------IRTKQVVREPVSSFNVSADGKLLAVGTASGDISI  326 (406)
Q Consensus       262 ~~~~~~~~l~~~~~~~~~~~i~~~d~~~-~~-----~---------~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i  326 (406)
                      +.+.      ...+.+..|.|..|.... .+     .         +..+........++.|+|+|..+.+-+.|..|++
T Consensus       154 qa~D------s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~  227 (558)
T KOG0882|consen  154 QAGD------SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRG  227 (558)
T ss_pred             cccc------ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEE
Confidence            9887      456777789999998772 11     1         1111222356789999999999999999999999


Q ss_pred             EECCCceEEEEee-------------------------------cccc-cceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490          327 IDSSSLQVRTAVK-------------------------------KAHL-GIVTALAFSYDSRALVSASMDSSVRVTVIED  374 (406)
Q Consensus       327 ~d~~~~~~~~~~~-------------------------------~~~~-~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~  374 (406)
                      ++.++++.++.+.                               ..|. ..-+.+.|...|++|+.++.=| |++.++.+
T Consensus       228 F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~t  306 (558)
T KOG0882|consen  228 FVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDT  306 (558)
T ss_pred             EEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeec
Confidence            9999887665543                               0111 1234678888899999988766 99999999


Q ss_pred             CcCCCC
Q 015490          375 KKKSGG  380 (406)
Q Consensus       375 ~~~~~~  380 (406)
                      +..++.
T Consensus       307 n~v~ri  312 (558)
T KOG0882|consen  307 NTVVRI  312 (558)
T ss_pred             CeEEEE
Confidence            876543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.87  E-value=2.4e-06  Score=73.28  Aligned_cols=186  Identities=16%  Similarity=0.120  Sum_probs=119.1

Q ss_pred             CCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeec-ccCC--cce
Q 015490          178 EGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPL-AKEN--DEL  254 (406)
Q Consensus       178 ~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~~~--~~~  254 (406)
                      ++..+++++.++.+..||..+|+.+........ +.... ..++..+++++.++.++.+|..+|+..... ....  ...
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~  112 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-ISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV  112 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-GGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-cccee-eecccccccccceeeeEecccCCcceeeeecccccccccc
Confidence            556677778999999999999998877665332 21111 223556777778889999999999987763 2211  111


Q ss_pred             EEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCC----------e-EEEEEcCCCCEEEEEeCCCc
Q 015490          255 FASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREP----------V-SSFNVSADGKLLAVGTASGD  323 (406)
Q Consensus       255 ~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~----------i-~~~~~sp~~~~l~~~~~dg~  323 (406)
                      .........+..      +..+..++.|..+|+++++.+.........          + ..+.+. ++ .++.++.++.
T Consensus       113 ~~~~~~~~~~~~------~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~  184 (238)
T PF13360_consen  113 RSSSSPAVDGDR------LYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGR  184 (238)
T ss_dssp             B--SEEEEETTE------EEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSS
T ss_pred             ccccCceEecCE------EEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCe
Confidence            122222323442      222334899999999999998887664322          1 222333 44 7777777886


Q ss_pred             EEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490          324 ISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       324 i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      +..+|+.+++.+...  . ...+..+ ...++..|+.++.++.|..||+++++.
T Consensus       185 ~~~~d~~tg~~~w~~--~-~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~  234 (238)
T PF13360_consen  185 VVAVDLATGEKLWSK--P-ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKV  234 (238)
T ss_dssp             EEEEETTTTEEEEEE--C-SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred             EEEEECCCCCEEEEe--c-CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence            444499999866432  2 2222221 345677888888999999999999986

...

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.86  E-value=6.2e-08  Score=91.23  Aligned_cols=112  Identities=22%  Similarity=0.277  Sum_probs=86.2

Q ss_pred             CCCceEEEEccCCCeEEEEe-----cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeC
Q 015490          113 SDLPYRMAIHPHGDGIICAL-----QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE  187 (406)
Q Consensus       113 ~~~v~~~~~sp~~~~l~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  187 (406)
                      .+..+-..|+|...++++++     .|++.||. +  +++.            .+...-+-.+++++|+|..-.|+.|-.
T Consensus        15 davsti~SWHPsePlfAVA~fS~er~GSVtIfa-d--tGEP------------qr~Vt~P~hatSLCWHpe~~vLa~gwe   79 (1416)
T KOG3617|consen   15 DAVSTISSWHPSEPLFAVASFSPERGGSVTIFA-D--TGEP------------QRDVTYPVHATSLCWHPEEFVLAQGWE   79 (1416)
T ss_pred             cccccccccCCCCceeEEEEecCCCCceEEEEe-c--CCCC------------CcccccceehhhhccChHHHHHhhccc
Confidence            34445678999999988775     56666653 2  2221            111222234567999999989999999


Q ss_pred             CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcC
Q 015490          188 NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLA  239 (406)
Q Consensus       188 dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~  239 (406)
                      -|.+.+|...+.+.......|..+|..+.||++|..++++..-|.+.+|...
T Consensus        80 ~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   80 MGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             cceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            9999999988877776667777899999999999999999999999999875

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.84  E-value=1.4e-08  Score=94.06  Aligned_cols=204  Identities=15%  Similarity=0.198  Sum_probs=143.4

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCC--ceeEEEEccCCC--EEEEEeCCCCEEEEEcCC-
Q 015490          166 NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHA--SVKDLSFSPDGK--FLVSLGNRGPGRVWDLAS-  240 (406)
Q Consensus       166 ~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--~i~~~~~s~~~~--~l~s~s~d~~i~iwd~~~-  240 (406)
                      ..+.+..+..+|.|+-+|.++.-| +.+.|+...-.......|-.  .|-++.|+|...  +-++......-.+|++.. 
T Consensus        23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s  101 (1081)
T KOG0309|consen   23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS  101 (1081)
T ss_pred             ecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence            456778899999999999988876 55667754332223333332  678889987543  333333444566888753 


Q ss_pred             -CeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCce-EEEEeeecCCCeEEEEEcCCCCEEEEE
Q 015490          241 -SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK-RIRTKQVVREPVSSFNVSADGKLLAVG  318 (406)
Q Consensus       241 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~  318 (406)
                       .+.+.-+...+...++.+.|+|..+.     ++++++-|..+..||+++.. ++..+..-......++|+-....+.+.
T Consensus       102 s~~aIef~lhghsraitd~n~~~q~pd-----Vlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas  176 (1081)
T KOG0309|consen  102 SSNAIEFVLHGHSRAITDINFNPQHPD-----VLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS  176 (1081)
T ss_pred             CccceEEEEecCccceeccccCCCCCc-----ceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh
Confidence             33344444456677899999999987     77888999999999999864 344444444556789998754445555


Q ss_pred             eCCCcEEEEECCCce-EEEEeecccccceEEEEEcCC-CCeEEEEECCCcEEEEEecCCc
Q 015490          319 TASGDISIIDSSSLQ-VRTAVKKAHLGIVTALAFSYD-SRALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       319 ~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~sp~-~~~l~s~s~dg~i~iw~~~~~~  376 (406)
                      +....|++||++.+. ++..++ +|...|+.+.|..- -..+.+++.|++|++||.+...
T Consensus       177 shg~~i~vwd~r~gs~pl~s~K-~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt  235 (1081)
T KOG0309|consen  177 SHGNDIFVWDLRKGSTPLCSLK-GHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST  235 (1081)
T ss_pred             ccCCceEEEeccCCCcceEEec-ccceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence            667789999998765 455554 79889999988753 3457889999999999987543

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.83  E-value=1.7e-07  Score=76.40  Aligned_cols=170  Identities=16%  Similarity=0.235  Sum_probs=102.2

Q ss_pred             ccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCE
Q 015490          103 DQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTI  181 (406)
Q Consensus       103 ~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  181 (406)
                      ..+...+..|+++-.+-+.+-.+..+++++ ++.+.++..+. .....+++..           .+..-.+.+....++.
T Consensus        79 i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~-~~~~~~~i~~-----------~~~~~as~~~~~~~~~  146 (319)
T KOG4714|consen   79 IDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDK-DLALMSRIPS-----------IHSGSASRKICRHGNS  146 (319)
T ss_pred             cCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechH-HHhhhhhccc-----------ccccccccceeecccE
Confidence            345566666666655555555666777776 77777765543 1111111110           0011111222223344


Q ss_pred             EEEee-----CCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCC-EEEEEeCCCCEEEEEcCCCeeeeecccCCcceE
Q 015490          182 FAAGS-----ENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGK-FLVSLGNRGPGRVWDLASSAVATPLAKENDELF  255 (406)
Q Consensus       182 l~~~~-----~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~  255 (406)
                      +.++.     .-+..+.|+++..+....-......|.+++-+|..+ .+++|+.||.+-+||.+.......+...+...+
T Consensus       147 i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i  226 (319)
T KOG4714|consen  147 ILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEI  226 (319)
T ss_pred             EecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhh
Confidence            43331     223566677655443322222333689999998654 667778899999999998866655555667778


Q ss_pred             EEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC
Q 015490          256 ASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT  289 (406)
Q Consensus       256 ~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~  289 (406)
                      ..+.|+|....     -+.++++||.+.-||..+
T Consensus       227 ~eV~FHpk~p~-----~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  227 WEVHFHPKNPE-----HLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             hheeccCCCch-----heeEecCCCcEEEEcCCC
Confidence            89999998775     345567899999999876

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.82  E-value=8.3e-07  Score=72.89  Aligned_cols=190  Identities=15%  Similarity=0.101  Sum_probs=124.4

Q ss_pred             CCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEcc---C-CCEEEEEeCCCCEEEEEcCCCeeeeecccCCcce
Q 015490          179 GTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSP---D-GKFLVSLGNRGPGRVWDLASSAVATPLAKENDEL  254 (406)
Q Consensus       179 g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~---~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~  254 (406)
                      -.+||.|+..|...+|...+.+....+...+  +.++....   + ...+..++.|.++++.++..+.....+-... -.
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~s--nn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~-~~  160 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCDVS--NNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQN-LT  160 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeeccc--ccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccc-cc
Confidence            3589999999999999988766544333222  22222211   1 2246678888899988886543322221111 23


Q ss_pred             EEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCce--EEEEe-eecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 015490          255 FASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK--RIRTK-QVVREPVSSFNVSADGKLLAVGTASGDISIIDSSS  331 (406)
Q Consensus       255 ~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~--~~~~~-~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~  331 (406)
                      ..+++++++++      +.++.++...|..|.+....  .+... ......-.+..|+.....+|++..||++.|||++.
T Consensus       161 ~ns~~~snd~~------~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~  234 (344)
T KOG4532|consen  161 QNSLHYSNDPS------WGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRN  234 (344)
T ss_pred             eeeeEEcCCCc------eEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecc
Confidence            67899999998      34555667788888775432  23312 22233446889999999999999999999999987


Q ss_pred             ceEEEEe----ecccccceEEEEEcCCCC--eEEEEECCCcEEEEEecCCcC
Q 015490          332 LQVRTAV----KKAHLGIVTALAFSYDSR--ALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       332 ~~~~~~~----~~~~~~~v~~~~~sp~~~--~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      .......    ...|.+.++.+.|++-|.  +|+..-.=+.+.+-|+++.+.
T Consensus       235 ~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~  286 (344)
T KOG4532|consen  235 MATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN  286 (344)
T ss_pred             cccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence            5433222    235899999999998653  333333446789999988764

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=7.9e-08  Score=84.23  Aligned_cols=212  Identities=16%  Similarity=0.091  Sum_probs=149.5

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCC--c-ceEeeeeccCCceeEEEEccCCCEEEEEeC-CCCEEEEEcCCC
Q 015490          166 NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPS--L-EIILNESEAHASVKDLSFSPDGKFLVSLGN-RGPGRVWDLASS  241 (406)
Q Consensus       166 ~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~--~-~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~-d~~i~iwd~~~~  241 (406)
                      |.+.|+.+..+ -.+++.+++.||.++.|.-..  + +.+..+..|...|.+++.+-++..+.+.+. |..++++|+.+-
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            44556555443 457899999999999998533  1 233344455568889999999999999887 999999999876


Q ss_pred             eeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCce--EEEEeeecCCCeEEEEEcCCCCEEEEEe
Q 015490          242 AVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK--RIRTKQVVREPVSSFNVSADGKLLAVGT  319 (406)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~i~~~~~sp~~~~l~~~~  319 (406)
                      ..+..+....-....+...++...   ...++++.-.++.+.++|-...-  ....-..|..+|..+.+.+-+..+++..
T Consensus        87 DminmiKL~~lPg~a~wv~skGd~---~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD  163 (558)
T KOG0882|consen   87 DMINMIKLVDLPGFAEWVTSKGDK---ISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID  163 (558)
T ss_pred             chhhhcccccCCCceEEecCCCCe---eeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc
Confidence            655433322211121222333322   23456667788999999976543  3344456789999999999999999998


Q ss_pred             CCCcEEEEECCC------ceEEEEee--------cccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490          320 ASGDISIIDSSS------LQVRTAVK--------KAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       320 ~dg~i~i~d~~~------~~~~~~~~--------~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~  381 (406)
                      ..|.|.-|....      .+....++        ........++.|+|+|..+.+-+.|.+|+++++.+++.+..+
T Consensus       164 ~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei  239 (558)
T KOG0882|consen  164 ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI  239 (558)
T ss_pred             ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence            899999999872      11111111        012345789999999999999999999999999999876544

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.77  E-value=3.4e-08  Score=57.96  Aligned_cols=39  Identities=26%  Similarity=0.309  Sum_probs=35.7

Q ss_pred             ceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEE
Q 015490          332 LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTV  371 (406)
Q Consensus       332 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~  371 (406)
                      ++++..+. +|...|++++|+|++.+|++++.|++|++||
T Consensus         1 g~~~~~~~-~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFR-GHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEE-SSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEc-CCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            35677775 8999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=98.73  E-value=8.6e-05  Score=66.47  Aligned_cols=291  Identities=14%  Similarity=0.128  Sum_probs=132.2

Q ss_pred             CCCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEe-cCC-CCceEEEEc-----------cCCCeEEEEe
Q 015490           66 IRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELR-TDS-DLPYRMAIH-----------PHGDGIICAL  132 (406)
Q Consensus        66 ~~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~-~~v~~~~~s-----------p~~~~l~~~~  132 (406)
                      .+.++++++..-........++.+....+++++... .+.+.++. .+. +.....-|+           .+.++|++.+
T Consensus        16 ~p~E~l~YV~~~~~~~~~~~pD~LatVDvdP~S~tY-gqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~Pg   94 (461)
T PF05694_consen   16 GPREKLLYVWCLYPGTGIDKPDYLATVDVDPDSPTY-GQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPG   94 (461)
T ss_dssp             S---SEEEEEEE-TTTT-----EEEEEE--TTSTTT-TSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEB
T ss_pred             CCCceEEEEEeecCCCCCCCCCeEEEEECCCCCCCc-ccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeee
Confidence            446666666543322333456778888888877554 23444442 333 466666665           2567888888


Q ss_pred             cCCeEEEEEecccccceeec-ceeccceeeecccccCcEEEEEECCCCCEEEEee------CCCeEEEEeCCCcceEeee
Q 015490          133 QNSCRLFEWDEVENTEIRRL-GVKISEKVLSQLENVGQQLALTFDSEGTIFAAGS------ENGNLRVFKWPSLEIILNE  205 (406)
Q Consensus       133 ~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~------~dg~i~vwd~~~~~~~~~~  205 (406)
                      =.+-+||.+|..+.....++ .+- ..+.+..-.+-.....+-.-|+|+.++++-      .-|-+.++|-++.+.....
T Consensus        95 L~SsrIyviD~~~dPr~P~l~KvI-e~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~W  173 (461)
T PF05694_consen   95 LRSSRIYVIDTKTDPRKPRLHKVI-EPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRW  173 (461)
T ss_dssp             TTT--EEEEE--S-TTS-EEEEEE--HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE-
T ss_pred             eccCcEEEEECCCCCCCCceEeee-CHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcccccccee
Confidence            55558888887643221111 110 110011001112233445567898888752      2356888898887777666


Q ss_pred             eccCC---ceeEEEEccCCCEEEEEeC--------------------CCCEEEEEcCCCeeeeecccCCcc-eEEEEEEE
Q 015490          206 SEAHA---SVKDLSFSPDGKFLVSLGN--------------------RGPGRVWDLASSAVATPLAKENDE-LFASCRFS  261 (406)
Q Consensus       206 ~~~~~---~i~~~~~s~~~~~l~s~s~--------------------d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~  261 (406)
                      .....   --.++-|.|..+.++|...                    ..++.+||+.+.+.++++...... ..-.+.|.
T Consensus       174 e~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRfl  253 (461)
T PF05694_consen  174 EKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFL  253 (461)
T ss_dssp             -SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-
T ss_pred             ccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEec
Confidence            54332   4567888998888887642                    357999999999999988765544 35578887


Q ss_pred             cCCCCceEEEEEEEcCCCcEEEEEeC-CCce--EEEEeeec-------------------CCCeEEEEEcCCCCEEEEEe
Q 015490          262 PLNNEDYVLYIAAITDRGASIVTWNT-TTWK--RIRTKQVV-------------------REPVSSFNVSADGKLLAVGT  319 (406)
Q Consensus       262 ~~~~~~~~l~~~~~~~~~~~i~~~d~-~~~~--~~~~~~~~-------------------~~~i~~~~~sp~~~~l~~~~  319 (406)
                      .+.....-+ +.+  .-...|..|-- ..++  ..+.+...                   ..-|+.+..|.|.++|.+.+
T Consensus       254 H~P~~~~gF-vg~--aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~  330 (461)
T PF05694_consen  254 HDPDANYGF-VGC--ALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSN  330 (461)
T ss_dssp             SSTT--EEE-EEE--E--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEE
T ss_pred             CCCCccceE-EEE--eccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEc
Confidence            765542222 221  23455555533 3222  21211111                   23478999999999999887


Q ss_pred             C-CCcEEEEECCCc---eEEEEeecc---------------cccceEEEEEcCCCCeEEEE
Q 015490          320 A-SGDISIIDSSSL---QVRTAVKKA---------------HLGIVTALAFSYDSRALVSA  361 (406)
Q Consensus       320 ~-dg~i~i~d~~~~---~~~~~~~~~---------------~~~~v~~~~~sp~~~~l~s~  361 (406)
                      . +|.|+.||+...   +...++.-+               -.+...-++.|-||+.|...
T Consensus       331 W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT  391 (461)
T PF05694_consen  331 WLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT  391 (461)
T ss_dssp             TTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred             ccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence            6 899999999763   333332211               11234667888888877644

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.73  E-value=7e-09  Score=97.85  Aligned_cols=199  Identities=13%  Similarity=0.132  Sum_probs=144.6

Q ss_pred             eccccc-CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCC--CEEEEEc
Q 015490          162 SQLENV-GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRG--PGRVWDL  238 (406)
Q Consensus       162 ~~~~~~-~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~--~i~iwd~  238 (406)
                      +.++.+ ...+|++|+-+.+.|++|+..|.|++|++.+|........|..+|+.+.-+.||..+++.+.-.  -..+|++
T Consensus      1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred             hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcc
Confidence            334443 6789999999999999999999999999999999989999999999999999999877765433  4678998


Q ss_pred             CC-CeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeee----cCCCeEEEEEcCCCC
Q 015490          239 AS-SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQV----VREPVSSFNVSADGK  313 (406)
Q Consensus       239 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~----~~~~i~~~~~sp~~~  313 (406)
                      .+ +...+.+..     -.++.|+.....      -+.+.......+||+.++..+.++-.    ....-.+..|+|+..
T Consensus      1175 ~s~~~~~Hsf~e-----d~~vkFsn~~q~------r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~ 1243 (1516)
T KOG1832|consen 1175 SSTGGPRHSFDE-----DKAVKFSNSLQF------RALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT 1243 (1516)
T ss_pred             ccccCccccccc-----cceeehhhhHHH------HHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc
Confidence            64 334444432     336777765432      23334456788999999877655321    122336788999988


Q ss_pred             EEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCchH
Q 015490          314 LLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLNL  383 (406)
Q Consensus       314 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~  383 (406)
                      +++   .||  .+||.+..+.++.+.+ .+.. ..-.|+|.|.-++.-+.     |||+++.+.++.+|-
T Consensus      1244 LIl---ndG--vLWDvR~~~aIh~FD~-ft~~-~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~ 1301 (1516)
T KOG1832|consen 1244 LIL---NDG--VLWDVRIPEAIHRFDQ-FTDY-GGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPS 1301 (1516)
T ss_pred             eEe---eCc--eeeeeccHHHHhhhhh-heec-ccccccCCCceEEeech-----hhhhHHHHHHhcCcc
Confidence            776   466  5899998877777652 2221 23468999998887653     999999888776653

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.73  E-value=4.8e-08  Score=82.71  Aligned_cols=131  Identities=12%  Similarity=0.121  Sum_probs=97.2

Q ss_pred             cccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc----ceEeeeeccCCceeEEEEcc-CCCEEEEEeCCCCEEEEE
Q 015490          163 QLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSL----EIILNESEAHASVKDLSFSP-DGKFLVSLGNRGPGRVWD  237 (406)
Q Consensus       163 ~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~iwd  237 (406)
                      .+...+.|.++.|...++++..|+.+|.|..+|++.+    .......-|...|+++.... ++++|++.+.+|+|++||
T Consensus       248 sf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD  327 (425)
T KOG2695|consen  248 SFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYD  327 (425)
T ss_pred             ccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEee
Confidence            3445577888999998999999999999999999765    22223345677888888766 788999999999999999


Q ss_pred             cCCCee---eeecccCCcceEE-EEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeec
Q 015490          238 LASSAV---ATPLAKENDELFA-SCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVV  299 (406)
Q Consensus       238 ~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  299 (406)
                      ++.-++   +..+.+|...... -+...+...      +++++++|...++|.++.+..+.++...
T Consensus       328 ~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg------~I~s~GdDcytRiWsl~~ghLl~tipf~  387 (425)
T KOG2695|consen  328 LRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG------SIFSVGDDCYTRIWSLDSGHLLCTIPFP  387 (425)
T ss_pred             ehhhhcccceeeeecccccccccccccccccc------eEEEccCeeEEEEEecccCceeeccCCC
Confidence            987776   7777766432211 122233333      3445788999999999999988877654

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=9.8e-07  Score=76.50  Aligned_cols=245  Identities=16%  Similarity=0.165  Sum_probs=137.0

Q ss_pred             eeEEecCCCCceEEEEccCCCeE-EEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCC-CEE
Q 015490          106 VAELRTDSDLPYRMAIHPHGDGI-ICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEG-TIF  182 (406)
Q Consensus       106 ~~~~~~h~~~v~~~~~sp~~~~l-~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l  182 (406)
                      ..-+.+|...|..++|+|..+-| ..++ ++.++|.++.              +...+..+..+..+.+++|.-|. +++
T Consensus       186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dle--------------t~~~vssy~a~~~~wSC~wDlde~h~I  251 (463)
T KOG1645|consen  186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLE--------------TSCVVSSYIAYNQIWSCCWDLDERHVI  251 (463)
T ss_pred             hhcccccchhhhhhccCccccceeeeeccCceEEEEecc--------------cceeeeheeccCCceeeeeccCCccee
Confidence            44667788899999999998844 4444 8888887766              33344555566889999998866 678


Q ss_pred             EEeeCCCeEEEEeCCCcceEee-eec--cCCceeEEEE------ccCCCEEEEEeCCCCEEEEEcCC--CeeeeecccCC
Q 015490          183 AAGSENGNLRVFKWPSLEIILN-ESE--AHASVKDLSF------SPDGKFLVSLGNRGPGRVWDLAS--SAVATPLAKEN  251 (406)
Q Consensus       183 ~~~~~dg~i~vwd~~~~~~~~~-~~~--~~~~i~~~~~------s~~~~~l~s~s~d~~i~iwd~~~--~~~~~~~~~~~  251 (406)
                      +.|..+|.|.|||++..+-... +..  ...+|..++.      .+.+.+++..+.+  +..|++.-  +.....++...
T Consensus       252 YaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~  329 (463)
T KOG1645|consen  252 YAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEP  329 (463)
T ss_pred             EEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCC
Confidence            8888899999999976543221 111  1113433333      2334445444443  44555432  22222333333


Q ss_pred             cceEEEEEEEcCCCCceEEEEEEEcCCCc---EE----EEEeCCCceEEEEee-ec-CC------CeEEEEEcCCCCEEE
Q 015490          252 DELFASCRFSPLNNEDYVLYIAAITDRGA---SI----VTWNTTTWKRIRTKQ-VV-RE------PVSSFNVSADGKLLA  316 (406)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~i----~~~d~~~~~~~~~~~-~~-~~------~i~~~~~sp~~~~l~  316 (406)
                      .+...++.+.+..++     ++++...+.   .+    .-.|-..+..+-..+ .+ .+      .-..+.-.+++++|+
T Consensus       330 pG~cismqy~~~snh-----~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv  404 (463)
T KOG1645|consen  330 PGICISMQYHGVSNH-----LLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIV  404 (463)
T ss_pred             CcceeeeeecCccce-----EEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEE
Confidence            334445555554444     122211110   00    011222222221111 11 00      001122234556655


Q ss_pred             E-EeCCCcEEEEECCCceEEEEeecccccceEEEEEcC-C-CCeEEEEECCCcEEEEEecC
Q 015490          317 V-GTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSY-D-SRALVSASMDSSVRVTVIED  374 (406)
Q Consensus       317 ~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp-~-~~~l~s~s~dg~i~iw~~~~  374 (406)
                      . +...+.+.+||..+++.+.++.  -+.+|.+++... + +.+|++- .|..++|+..++
T Consensus       405 ~~gd~tn~lil~D~~s~evvQ~l~--~~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~es  462 (463)
T KOG1645|consen  405 VVGDSTNELILQDPHSFEVVQTLA--LSEPVLDICPNDTNGSSYLALL-TDDRVHIYKNES  462 (463)
T ss_pred             EecCCcceeEEeccchhheeeecc--cCcceeecceeecCCcchhhhe-ecceEEEEecCC
Confidence            4 4456789999999999999985  567888777654 2 3466655 466799987654

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.72  E-value=1.1e-06  Score=82.79  Aligned_cols=188  Identities=15%  Similarity=0.164  Sum_probs=128.8

Q ss_pred             CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeec
Q 015490          168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPL  247 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  247 (406)
                      ..+.|++++  ++.|+.|+.+|.|++++.... . .....|...      ..+|.++++|+.||++.|-.+-+.+...++
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~  109 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY  109 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence            445566664  468999999999999996533 2 233333322      568999999999999999998888776665


Q ss_pred             ccCCcceEEEEEEEcCC-CCceEEEEEEEcCCCcEEEEEeCCCc--eEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcE
Q 015490          248 AKENDELFASCRFSPLN-NEDYVLYIAAITDRGASIVTWNTTTW--KRIRTKQVVREPVSSFNVSADGKLLAVGTASGDI  324 (406)
Q Consensus       248 ~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i  324 (406)
                      ..  ..++.+++++|+- +....  -.++|+..| +.++.-+=.  +....+....++|.+++|.  |++||-++.+| |
T Consensus       110 df--~rpiksial~Pd~~~~~sk--~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v  181 (846)
T KOG2066|consen  110 DF--KRPIKSIALHPDFSRQQSK--QFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-V  181 (846)
T ss_pred             ec--CCcceeEEeccchhhhhhh--heeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-c
Confidence            43  3467899999981 11001  234556566 777654311  1112344456899999998  88999998887 9


Q ss_pred             EEEECCCceEEEEeeccccc-----ceEEEEEcCCCCeEEEEECCCcEEEEEecCC
Q 015490          325 SIIDSSSLQVRTAVKKAHLG-----IVTALAFSYDSRALVSASMDSSVRVTVIEDK  375 (406)
Q Consensus       325 ~i~d~~~~~~~~~~~~~~~~-----~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~  375 (406)
                      ++||+.+.+.+..+...+..     ....+.|.++.+. +. |+..+|+|..++.+
T Consensus       182 ~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~L-VI-GW~d~v~i~~I~~~  235 (846)
T KOG2066|consen  182 KVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRL-VI-GWGDSVKICSIKKR  235 (846)
T ss_pred             EEEeccccceeeccCCCCCCCCcccCCCceEecCCCeE-EE-ecCCeEEEEEEecc
Confidence            99999999888777644421     1346788877553 33 45667999999843

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.70  E-value=7.7e-08  Score=56.39  Aligned_cols=39  Identities=33%  Similarity=0.454  Sum_probs=36.8

Q ss_pred             ceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 015490          290 WKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIID  328 (406)
Q Consensus       290 ~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d  328 (406)
                      ++++.++.+|...|.+++|+|++++|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.70  E-value=1.2e-05  Score=73.26  Aligned_cols=258  Identities=16%  Similarity=0.138  Sum_probs=138.2

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecc-----
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQL-----  164 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----  164 (406)
                      .++.++.+..     .+..+......+....|||+|+.++...++.  ||..+..++ ...++..........-.     
T Consensus        24 ~y~i~d~~~~-----~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~n--ly~~~~~~~-~~~~lT~dg~~~i~nG~~dwvy   95 (353)
T PF00930_consen   24 DYYIYDIETG-----EITPLTPPPPKLQDAKWSPDGKYIAFVRDNN--LYLRDLATG-QETQLTTDGEPGIYNGVPDWVY   95 (353)
T ss_dssp             EEEEEETTTT-----EEEESS-EETTBSEEEE-SSSTEEEEEETTE--EEEESSTTS-EEEESES--TTTEEESB--HHH
T ss_pred             eEEEEecCCC-----ceEECcCCccccccceeecCCCeeEEEecCc--eEEEECCCC-CeEEeccccceeEEcCccceec
Confidence            4555666553     2223322267789999999999999998775  555555444 22222221100000000     


Q ss_pred             cc--cCcEEEEEECCCCCEEEEeeCC-C-----------------------------------eEEEEeCCCcceEe-ee
Q 015490          165 EN--VGQQLALTFDSEGTIFAAGSEN-G-----------------------------------NLRVFKWPSLEIIL-NE  205 (406)
Q Consensus       165 ~~--~~~v~~~~~s~~g~~l~~~~~d-g-----------------------------------~i~vwd~~~~~~~~-~~  205 (406)
                      +.  -+.-..+.|||||++||....| .                                   .+.|+|+.+++... ..
T Consensus        96 eEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~  175 (353)
T PF00930_consen   96 EEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDP  175 (353)
T ss_dssp             HHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE--
T ss_pred             cccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeee
Confidence            00  1223568899999998875322 1                                   24455665554321 11


Q ss_pred             e----ccCCceeEEEEccCCCEEEEE--eCCC---CEEEEEcCCCeeeeecccCCcce---EEEEEEE-cCCCCceEEEE
Q 015490          206 S----EAHASVKDLSFSPDGKFLVSL--GNRG---PGRVWDLASSAVATPLAKENDEL---FASCRFS-PLNNEDYVLYI  272 (406)
Q Consensus       206 ~----~~~~~i~~~~~s~~~~~l~s~--s~d~---~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~l~~  272 (406)
                      .    ....-+..+.|.++++.|+..  +++.   .+.++|..++.............   .....|. +++..  .+ .
T Consensus       176 ~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~--~l-~  252 (353)
T PF00930_consen  176 PNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNE--FL-W  252 (353)
T ss_dssp             -HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSE--EE-E
T ss_pred             ccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCE--EE-E
Confidence            1    122267889999999844433  3333   36677887765543332222211   1234454 66654  23 3


Q ss_pred             EEEcCCCcEEEEEeCCCceEEEEeeecCCCeEE-EEEcCCCCEEEE-EeC----CCcEEEEECC-CceEEEEeecccccc
Q 015490          273 AAITDRGASIVTWNTTTWKRIRTKQVVREPVSS-FNVSADGKLLAV-GTA----SGDISIIDSS-SLQVRTAVKKAHLGI  345 (406)
Q Consensus       273 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~-~~~sp~~~~l~~-~~~----dg~i~i~d~~-~~~~~~~~~~~~~~~  345 (406)
                      +...++-..|++++...+.. ..+......|.. +.++++++.|+. +..    ...++..++. .+.. ..+. ...+.
T Consensus       253 ~s~~~G~~hly~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~-~~LT-~~~~~  329 (353)
T PF00930_consen  253 ISERDGYRHLYLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP-KCLT-CEDGD  329 (353)
T ss_dssp             EEETTSSEEEEEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE-EESS-TTSST
T ss_pred             EEEcCCCcEEEEEcccccce-eccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe-Eecc-CCCCC
Confidence            33345566788888887663 456655666744 778888776654 443    2357777777 4444 4443 22222


Q ss_pred             eEEEEEcCCCCeEEEE
Q 015490          346 VTALAFSYDSRALVSA  361 (406)
Q Consensus       346 v~~~~~sp~~~~l~s~  361 (406)
                      -..+.|||++++++-.
T Consensus       330 ~~~~~~Spdg~y~v~~  345 (353)
T PF00930_consen  330 HYSASFSPDGKYYVDT  345 (353)
T ss_dssp             TEEEEE-TTSSEEEEE
T ss_pred             ceEEEECCCCCEEEEE
Confidence            2689999999987643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.70  E-value=6e-06  Score=77.52  Aligned_cols=234  Identities=12%  Similarity=0.032  Sum_probs=139.3

Q ss_pred             CCCeEEEEecCCeEEEEEecccccceeecceecc----ceeeecccccCcEEE-----EEECCCCCEEEE-eeCCCeEEE
Q 015490          124 HGDGIICALQNSCRLFEWDEVENTEIRRLGVKIS----EKVLSQLENVGQQLA-----LTFDSEGTIFAA-GSENGNLRV  193 (406)
Q Consensus       124 ~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~-----~~~s~~g~~l~~-~~~dg~i~v  193 (406)
                      ||++|+.-.....|+-.++....+....+.++..    .-..+.......|.|     +=++|||+.+.. .-..+.+.+
T Consensus       140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv  219 (635)
T PRK02888        140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA  219 (635)
T ss_pred             ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence            6777877653444665555554443333322211    111111122223322     345667765533 334577888


Q ss_pred             EeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCC----CEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceE
Q 015490          194 FKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRG----PGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYV  269 (406)
Q Consensus       194 wd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (406)
                      .|.++.+...++.-.. ....++++++|+++++.+.+.    ++..-+..+......+....     .-++.++++.   
T Consensus       220 ID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~-----iea~vkdGK~---  290 (635)
T PRK02888        220 VDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR-----IEEAVKAGKF---  290 (635)
T ss_pred             EECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH-----HHHhhhCCCE---
Confidence            8988877766654433 446789999999998886432    22222222111111111000     0123345653   


Q ss_pred             EEEEEEcCCCcEEEEEeCCC-----ceEEEEeeecCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCceE---------
Q 015490          270 LYIAAITDRGASIVTWNTTT-----WKRIRTKQVVREPVSSFNVSADGKLLAVGTA-SGDISIIDSSSLQV---------  334 (406)
Q Consensus       270 l~~~~~~~~~~~i~~~d~~~-----~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~~~~~---------  334 (406)
                        ...   .++.|.++|.++     .+.+..+... .....+.++|||+++++++. +.+|.|+|+.+.+.         
T Consensus       291 --~~V---~gn~V~VID~~t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~  364 (635)
T PRK02888        291 --KTI---GGSKVPVVDGRKAANAGSALTRYVPVP-KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPR  364 (635)
T ss_pred             --EEE---CCCEEEEEECCccccCCcceEEEEECC-CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCcc
Confidence              122   267899999998     4555555544 45689999999999988776 89999999987552         


Q ss_pred             ---EEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490          335 ---RTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIED  374 (406)
Q Consensus       335 ---~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~  374 (406)
                         ..+..  -.......+|.++|....|.-.|..|..|++.+
T Consensus       365 ~~vvaeve--vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        365 DAVVAEPE--LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ceEEEeec--cCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence               33332  122345778999999888889999999999986

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.70  E-value=5.6e-08  Score=82.35  Aligned_cols=157  Identities=11%  Similarity=0.133  Sum_probs=112.3

Q ss_pred             EEEccC--CCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc--
Q 015490          215 LSFSPD--GKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW--  290 (406)
Q Consensus       215 ~~~s~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~--  290 (406)
                      ++|+-+  +-. ++.+.+..+-+-|+++|.... +.  ....|-++.|...++      ++..|..+|.|..+|++.+  
T Consensus       217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~qs-f~--sksDVfAlQf~~s~n------Lv~~GcRngeI~~iDLR~rnq  286 (425)
T KOG2695|consen  217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQS-FQ--SKSDVFALQFAGSDN------LVFNGCRNGEIFVIDLRCRNQ  286 (425)
T ss_pred             hhhhhccceee-ecccccceeEEEEeecccccc-cc--cchhHHHHHhcccCC------eeEecccCCcEEEEEeeeccc
Confidence            356532  333 556667788889988775432 22  233455677777666      5677889999999999875  


Q ss_pred             ---eEEEEeeecCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCceE---EEEeecccccceE--EEEEcCCCCeEEEE
Q 015490          291 ---KRIRTKQVVREPVSSFNVSA-DGKLLAVGTASGDISIIDSSSLQV---RTAVKKAHLGIVT--ALAFSYDSRALVSA  361 (406)
Q Consensus       291 ---~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~--~~~~sp~~~~l~s~  361 (406)
                         .+...+ .|...|+++..-. ++++|++.+.+|+|.+||++.-+.   +.++. +|...-.  -+...+....++++
T Consensus       287 G~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe-GHvN~~a~l~~~v~~eeg~I~s~  364 (425)
T KOG2695|consen  287 GNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE-GHVNLSAYLPAHVKEEEGSIFSV  364 (425)
T ss_pred             CCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeee-cccccccccccccccccceEEEc
Confidence               233333 4677888887665 688999999999999999987666   66665 7754332  23345566788899


Q ss_pred             ECCCcEEEEEecCCcCCCCchH
Q 015490          362 SMDSSVRVTVIEDKKKSGGLNL  383 (406)
Q Consensus       362 s~dg~i~iw~~~~~~~~~~~~~  383 (406)
                      +.|...|||.++++..+.++|+
T Consensus       365 GdDcytRiWsl~~ghLl~tipf  386 (425)
T KOG2695|consen  365 GDDCYTRIWSLDSGHLLCTIPF  386 (425)
T ss_pred             cCeeEEEEEecccCceeeccCC
Confidence            9999999999999988877765

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.69  E-value=6.6e-07  Score=85.20  Aligned_cols=148  Identities=19%  Similarity=0.282  Sum_probs=113.7

Q ss_pred             EEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeC---------CCCEEEEEcCC
Q 015490          170 QLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGN---------RGPGRVWDLAS  240 (406)
Q Consensus       170 v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~---------d~~i~iwd~~~  240 (406)
                      |.-++.  +++.+.+|...|+|.+-|.++.+.+..+..|.+.|.++..  .|+.|++++.         |..|+|||++.
T Consensus       180 v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRm  255 (1118)
T KOG1275|consen  180 VTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRM  255 (1118)
T ss_pred             eEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhh
Confidence            444443  6789999999999999999999999999999998877766  5889999875         56789999999


Q ss_pred             CeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC---Cc-eEEEEeeecCCCeEEEEEcCCCCEEE
Q 015490          241 SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT---TW-KRIRTKQVVREPVSSFNVSADGKLLA  316 (406)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~---~~-~~~~~~~~~~~~i~~~~~sp~~~~l~  316 (406)
                      .+.+..+..+.+.  .-+.|+|.-..     .++..+..|...+.|..   +. ..+..+......+..+++|++++.++
T Consensus       256 mral~PI~~~~~P--~flrf~Psl~t-----~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~ala  328 (1118)
T KOG1275|consen  256 MRALSPIQFPYGP--QFLRFHPSLTT-----RLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALA  328 (1118)
T ss_pred             hhccCCcccccCc--hhhhhcccccc-----eEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEE
Confidence            8887777655443  34778887654     34455667888888843   22 12233333345699999999999999


Q ss_pred             EEeCCCcEEEEE
Q 015490          317 VGTASGDISIID  328 (406)
Q Consensus       317 ~~~~dg~i~i~d  328 (406)
                      .|..+|.|.+|.
T Consensus       329 fgd~~g~v~~wa  340 (1118)
T KOG1275|consen  329 FGDHEGHVNLWA  340 (1118)
T ss_pred             EecccCcEeeec
Confidence            999999999997

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.68  E-value=1e-05  Score=79.81  Aligned_cols=205  Identities=15%  Similarity=0.131  Sum_probs=132.1

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEc----CC-
Q 015490          166 NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDL----AS-  240 (406)
Q Consensus       166 ~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~----~~-  240 (406)
                      +.+.|.++.|..++..++.+..+|.|.+-|.++..... ...-...|.+++||||++.++..+..+++.+-+-    -. 
T Consensus        67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E  145 (1265)
T KOG1920|consen   67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE  145 (1265)
T ss_pred             CCcceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence            44689999999999999999999999999877665432 2223458999999999999999988877765432    00 


Q ss_pred             ------------------CeeeeecccC--------------------CcceEEEEEEEcCCCCceEEEE-EEEcCCCcE
Q 015490          241 ------------------SAVATPLAKE--------------------NDELFASCRFSPLNNEDYVLYI-AAITDRGAS  281 (406)
Q Consensus       241 ------------------~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~  281 (406)
                                        |+....+.+.                    ....-+.+.|.-+|..  .... .....+.+.
T Consensus       146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~--fAVs~~~~~~~~Rk  223 (1265)
T KOG1920|consen  146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEY--FAVSFVESETGTRK  223 (1265)
T ss_pred             cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcE--EEEEEEeccCCcee
Confidence                              1111111100                    0111235889989884  1111 111222389


Q ss_pred             EEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCce---EEEEeecccccceEEEEEcCCC
Q 015490          282 IVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA---SGDISIIDSSSLQ---VRTAVKKAHLGIVTALAFSYDS  355 (406)
Q Consensus       282 i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~---dg~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~sp~~  355 (406)
                      |++||.+ +..-..-....+.-.+++|-|.|..+++-..   |+.|.+|.-+..+   ....+. ....++..++|+.++
T Consensus       224 irV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p-~de~~ve~L~Wns~s  301 (1265)
T KOG1920|consen  224 IRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFP-LDEKEVEELAWNSNS  301 (1265)
T ss_pred             EEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCc-ccccchheeeecCCC
Confidence            9999987 4432222222334468999999999987543   6679999854322   111121 223348999999999


Q ss_pred             CeEEE---EECCCcEEEEEecCC
Q 015490          356 RALVS---ASMDSSVRVTVIEDK  375 (406)
Q Consensus       356 ~~l~s---~s~dg~i~iw~~~~~  375 (406)
                      ..|++   ......|++|-+.+-
T Consensus       302 diLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  302 DILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             CceeeeecccccceEEEEEecCe
Confidence            99887   445555999998763

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.65  E-value=1.7e-05  Score=78.26  Aligned_cols=203  Identities=11%  Similarity=0.096  Sum_probs=124.1

Q ss_pred             CCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCe
Q 015490          112 DSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGN  190 (406)
Q Consensus       112 h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  190 (406)
                      ..+.|.++.|..++..++.+. .|++.+.  +..+...          ..+  -.....|.+++||||++.++..+.+++
T Consensus        67 gd~~i~s~~fl~d~~~i~v~~~~G~iilv--d~et~~~----------eiv--g~vd~GI~aaswS~Dee~l~liT~~~t  132 (1265)
T KOG1920|consen   67 GDDEIVSVQFLADTNSICVITALGDIILV--DPETLEL----------EIV--GNVDNGISAASWSPDEELLALITGRQT  132 (1265)
T ss_pred             CCcceEEEEEecccceEEEEecCCcEEEE--cccccce----------eee--eeccCceEEEeecCCCcEEEEEeCCcE
Confidence            346899999999888777765 6766554  3321110          000  012468999999999999999888888


Q ss_pred             EEEEeCC----C-------------------cceEeeeec---------------------cCCceeEEEEccCCCEEEE
Q 015490          191 LRVFKWP----S-------------------LEIILNESE---------------------AHASVKDLSFSPDGKFLVS  226 (406)
Q Consensus       191 i~vwd~~----~-------------------~~~~~~~~~---------------------~~~~i~~~~~s~~~~~l~s  226 (406)
                      +.+-+-.    .                   |+....+.+                     .++.=..|.|--||+++++
T Consensus       133 ll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAV  212 (1265)
T KOG1920|consen  133 LLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAV  212 (1265)
T ss_pred             EEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEE
Confidence            7765420    0                   000011110                     0111235999999999998


Q ss_pred             Ee-----CCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc---eEEEEeee
Q 015490          227 LG-----NRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW---KRIRTKQV  298 (406)
Q Consensus       227 ~s-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~---~~~~~~~~  298 (406)
                      ..     ..+.|++||-+ |.... ........-.+++|-|.|..   +..+-....++.|.++..+..   .....+..
T Consensus       213 s~~~~~~~~RkirV~drE-g~Lns-~se~~~~l~~~LsWkPsgs~---iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~  287 (1265)
T KOG1920|consen  213 SFVESETGTRKIRVYDRE-GALNS-TSEPVEGLQHSLSWKPSGSL---IAAIQCKTSDSDIVFFERNGLRHGEFVLPFPL  287 (1265)
T ss_pred             EEEeccCCceeEEEeccc-chhhc-ccCcccccccceeecCCCCe---EeeeeecCCCCcEEEEecCCccccccccCCcc
Confidence            43     33789999986 43322 22222333457999998873   212222344567888876542   22222233


Q ss_pred             cCCCeEEEEEcCCCCEEEE---EeCCCcEEEEECCCce
Q 015490          299 VREPVSSFNVSADGKLLAV---GTASGDISIIDSSSLQ  333 (406)
Q Consensus       299 ~~~~i~~~~~sp~~~~l~~---~~~dg~i~i~d~~~~~  333 (406)
                      ....+..++|+.++..|++   ......|++|-+.+..
T Consensus       288 de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  288 DEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             cccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence            3345899999999999988   4445559999887643

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.65  E-value=8.2e-06  Score=75.08  Aligned_cols=193  Identities=19%  Similarity=0.227  Sum_probs=117.9

Q ss_pred             eEEecCCCCceEEEEccCCCeEEEEe--cCC-eEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEE
Q 015490          107 AELRTDSDLPYRMAIHPHGDGIICAL--QNS-CRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFA  183 (406)
Q Consensus       107 ~~~~~h~~~v~~~~~sp~~~~l~~~~--~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  183 (406)
                      ..+..-...+..-+|+|++..++...  .+. .++|.++...+.....+.            ..+.-..-+|+|||+.|+
T Consensus       186 ~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~------------~~g~~~~P~fspDG~~l~  253 (425)
T COG0823         186 QKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN------------FNGNNGAPAFSPDGSKLA  253 (425)
T ss_pred             eEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec------------cCCccCCccCCCCCCEEE
Confidence            34444456677789999999887664  333 578888877654333321            223334568999998777


Q ss_pred             Ee-eCCCe--EEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCC-C--CEEEEEcCCCeeeeecccCCcceEEE
Q 015490          184 AG-SENGN--LRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNR-G--PGRVWDLASSAVATPLAKENDELFAS  257 (406)
Q Consensus       184 ~~-~~dg~--i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~  257 (406)
                      .. ..||.  |.++|+.++... .+....+.-..-.|+|||+.++..++. |  .|.++|...+...+ +........ .
T Consensus       254 f~~~rdg~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r-iT~~~~~~~-~  330 (425)
T COG0823         254 FSSSRDGSPDIYLMDLDGKNLP-RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR-LTFSGGGNS-N  330 (425)
T ss_pred             EEECCCCCccEEEEcCCCCcce-ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE-eeccCCCCc-C
Confidence            55 44554  666777666633 344444434478899999998887653 3  46667776655433 222222222 6


Q ss_pred             EEEEcCCCCceEEEEEEEcCCCc--EEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC
Q 015490          258 CRFSPLNNEDYVLYIAAITDRGA--SIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA  320 (406)
Q Consensus       258 ~~~~~~~~~~~~l~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~  320 (406)
                      ..|+|+++.     ++.....+|  .|.+.|+.++...+.+. ........+|.++++.+...+.
T Consensus       331 p~~SpdG~~-----i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         331 PVWSPDGDK-----IVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             ccCCCCCCE-----EEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEecc
Confidence            789999996     222222233  47777776655434333 2334456788899988776554

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.64  E-value=6.2e-05  Score=63.76  Aligned_cols=202  Identities=13%  Similarity=0.200  Sum_probs=119.3

Q ss_pred             EEecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeC
Q 015490          108 ELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE  187 (406)
Q Consensus       108 ~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  187 (406)
                      .+.+-.+.+..++|+|+...|++..+....|+.++.. ++.++.+.+          .+.+..-.+++..++.++++--.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l----------~g~~D~EgI~y~g~~~~vl~~Er   84 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPL----------DGFGDYEGITYLGNGRYVLSEER   84 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-----------SS-SSEEEEEE-STTEEEEEETT
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeC----------CCCCCceeEEEECCCEEEEEEcC
Confidence            3445556689999999999999988888889988863 444444333          24467788999888877777666


Q ss_pred             CCeEEEEeCCCcc------eEeeee-----ccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCC---Ceeeee-----cc
Q 015490          188 NGNLRVFKWPSLE------IILNES-----EAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLAS---SAVATP-----LA  248 (406)
Q Consensus       188 dg~i~vwd~~~~~------~~~~~~-----~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~---~~~~~~-----~~  248 (406)
                      ++.+.++++....      ....+.     .+...+-.++|++.++.|+.+-......+|.+..   ......     +.
T Consensus        85 ~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~  164 (248)
T PF06977_consen   85 DQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLD  164 (248)
T ss_dssp             TTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH
T ss_pred             CCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccc
Confidence            8999999983321      111111     1233689999999988888887777777777654   111110     00


Q ss_pred             --cCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC---------CCeEEEEEcCCCCEEEE
Q 015490          249 --KENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR---------EPVSSFNVSADGKLLAV  317 (406)
Q Consensus       249 --~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~---------~~i~~~~~sp~~~~l~~  317 (406)
                        ...-..+.+++++|...+     +.+..+....|..+| .+++.+..+....         .....|+|.++|++.+ 
T Consensus       165 ~~~~~~~d~S~l~~~p~t~~-----lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-  237 (248)
T PF06977_consen  165 DDKLFVRDLSGLSYDPRTGH-----LLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-  237 (248)
T ss_dssp             -HT--SS---EEEEETTTTE-----EEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-
T ss_pred             cccceeccccceEEcCCCCe-----EEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-
Confidence              112223678999999886     334457889999999 6667766665543         2568899999996544 


Q ss_pred             EeCCCcEEEE
Q 015490          318 GTASGDISII  327 (406)
Q Consensus       318 ~~~dg~i~i~  327 (406)
                      .++-+..++|
T Consensus       238 vsEpNlfy~f  247 (248)
T PF06977_consen  238 VSEPNLFYRF  247 (248)
T ss_dssp             EETTTEEEEE
T ss_pred             EcCCceEEEe
Confidence            4565555544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.58  E-value=0.00024  Score=62.06  Aligned_cols=272  Identities=14%  Similarity=0.127  Sum_probs=152.1

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe---c------CCeEEEEEecccccceeecceecccee
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL---Q------NSCRLFEWDEVENTEIRRLGVKISEKV  160 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~---~------~~~~i~~~~~~~~~~~~~~~~~~~~~~  160 (406)
                      .++.+|.+.+.+    +..+..  +-.-.+..+|+++.++++.   +      .+=.|-.||..+......+.+++....
T Consensus        18 rv~viD~d~~k~----lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~   91 (342)
T PF06433_consen   18 RVYVIDADSGKL----LGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA   91 (342)
T ss_dssp             EEEEEETTTTEE----EEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred             eEEEEECCCCcE----EEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence            566666665432    222221  2233467899999888642   1      122234466666655555555422111


Q ss_pred             eecccccCcEEEEEECCCCCEEEEee--CCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEc
Q 015490          161 LSQLENVGQQLALTFDSEGTIFAAGS--ENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDL  238 (406)
Q Consensus       161 ~~~~~~~~~v~~~~~s~~g~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~  238 (406)
                       +...   .....++|.||+++++..  --..|.|.|+..++.+..+... + +..+-=+. .+.+.+.+.||++.-..+
T Consensus        92 -~~~~---~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-G-C~~iyP~~-~~~F~~lC~DGsl~~v~L  164 (342)
T PF06433_consen   92 -QVVP---YKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-G-CWLIYPSG-NRGFSMLCGDGSLLTVTL  164 (342)
T ss_dssp             --BS-----GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-S-EEEEEEEE-TTEEEEEETTSCEEEEEE
T ss_pred             -eecc---cccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-C-EEEEEecC-CCceEEEecCCceEEEEE
Confidence             1111   122358899999887763  3467999999998887665432 2 12221122 245888888999988888


Q ss_pred             C-CCeeeee----cccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEE--EEeeec----------CC
Q 015490          239 A-SSAVATP----LAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRI--RTKQVV----------RE  301 (406)
Q Consensus       239 ~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~--~~~~~~----------~~  301 (406)
                      . .|+...+    +....+..+..-++...+..   +++   .+.+|.|+-.|+......  ..+...          .+
T Consensus       165 d~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~---~~F---~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPG  238 (342)
T PF06433_consen  165 DADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGR---LYF---VSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPG  238 (342)
T ss_dssp             TSTSSEEEEEEEESSTTTS-B-S--EEETTTTE---EEE---EBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-
T ss_pred             CCCCCEeEeeccccCCCCcccccccceECCCCe---EEE---EecCCEEEEEeccCCcccccCcccccCccccccCcCCc
Confidence            7 4544322    11122222333344444432   111   246788888887654421  222110          12


Q ss_pred             CeEEEEEcCCCCEEEEEeC---CC-------cEEEEECCCceEEEEeecccccceEEEEEcCCCC-eEEEEE-CCCcEEE
Q 015490          302 PVSSFNVSADGKLLAVGTA---SG-------DISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSR-ALVSAS-MDSSVRV  369 (406)
Q Consensus       302 ~i~~~~~sp~~~~l~~~~~---dg-------~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~s-~dg~i~i  369 (406)
                      ...-+++++..+.|++--.   ++       .|.++|+.+++.+.++.  ...++.+|..+.+.+ +|++.+ .++.+.+
T Consensus       239 G~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~--l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v  316 (342)
T PF06433_consen  239 GWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP--LEHPIDSIAVSQDDKPLLYALSAGDGTLDV  316 (342)
T ss_dssp             SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE--EEEEESEEEEESSSS-EEEEEETTTTEEEE
T ss_pred             ceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe--CCCccceEEEccCCCcEEEEEcCCCCeEEE
Confidence            3345788876666655322   11       48999999999999986  345688999998765 565544 5789999


Q ss_pred             EEecCCcCCCCch
Q 015490          370 TVIEDKKKSGGLN  382 (406)
Q Consensus       370 w~~~~~~~~~~~~  382 (406)
                      ||..+++.++++.
T Consensus       317 ~D~~tGk~~~~~~  329 (342)
T PF06433_consen  317 YDAATGKLVRSIE  329 (342)
T ss_dssp             EETTT--EEEEE-
T ss_pred             EeCcCCcEEeehh
Confidence            9999999876654

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.57  E-value=7.1e-06  Score=75.19  Aligned_cols=80  Identities=16%  Similarity=0.258  Sum_probs=65.8

Q ss_pred             ecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCC
Q 015490          162 SQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASS  241 (406)
Q Consensus       162 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~  241 (406)
                      ..+.....+.|++++|+...++.|+.||.|.+||...+...  .....-..+.++|+|+|..+++|+..|.+.+||+.-.
T Consensus       254 tsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  254 TSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            34556688999999999999999999999999998766333  2233346789999999999999999999999998654


Q ss_pred             ee
Q 015490          242 AV  243 (406)
Q Consensus       242 ~~  243 (406)
                      ..
T Consensus       332 pi  333 (545)
T PF11768_consen  332 PI  333 (545)
T ss_pred             cc
Confidence            43

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.57  E-value=0.00023  Score=65.93  Aligned_cols=220  Identities=13%  Similarity=0.116  Sum_probs=125.6

Q ss_pred             eEEEEecCCeEEEEEecccccceeecceeccceeeecccc-cCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeee
Q 015490          127 GIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLEN-VGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNE  205 (406)
Q Consensus       127 ~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~  205 (406)
                      .++++. +...++-+|..+++........  .... .... ..++    .  .+..++.++.+|.+..+|..+|+.....
T Consensus       162 ~v~v~~-~~g~l~ald~~tG~~~W~~~~~--~~~~-~~~~~~sP~----v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~  231 (394)
T PRK11138        162 LVLVHT-SNGMLQALNESDGAVKWTVNLD--VPSL-TLRGESAPA----T--AFGGAIVGGDNGRVSAVLMEQGQLIWQQ  231 (394)
T ss_pred             EEEEEC-CCCEEEEEEccCCCEeeeecCC--CCcc-cccCCCCCE----E--ECCEEEEEcCCCEEEEEEccCChhhhee
Confidence            444443 2336777888877777665431  0000 0000 1111    1  1234666778899999999888765543


Q ss_pred             eccCC-------ceeEEEEcc--CCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEc
Q 015490          206 SEAHA-------SVKDLSFSP--DGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAIT  276 (406)
Q Consensus       206 ~~~~~-------~i~~~~~s~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  276 (406)
                      .....       ....+.-+|  .+..++.++.++.+..+|..+|+..-......   ...+.  ..+..   +|+   .
T Consensus       232 ~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~---~~~~~--~~~~~---vy~---~  300 (394)
T PRK11138        232 RISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS---VNDFA--VDGGR---IYL---V  300 (394)
T ss_pred             ccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC---ccCcE--EECCE---EEE---E
Confidence            21110       011111122  24567778889999999999998765443211   11111  12332   222   3


Q ss_pred             CCCcEEEEEeCCCceEEEEeeecC-CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceE-EEEEcCC
Q 015490          277 DRGASIVTWNTTTWKRIRTKQVVR-EPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVT-ALAFSYD  354 (406)
Q Consensus       277 ~~~~~i~~~d~~~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~-~~~~sp~  354 (406)
                      +.++.+..+|..+++.+-...... ....+...  .+.+|++++.+|.+.++|..+++.+..... ....+. ...+  .
T Consensus       301 ~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~-~~~~~~s~P~~--~  375 (394)
T PRK11138        301 DQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKV-DSSGFLSEPVV--A  375 (394)
T ss_pred             cCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc-CCCcceeCCEE--E
Confidence            568899999999987755433211 11222222  256788899999999999999998877652 222222 2222  2


Q ss_pred             CCeEEEEECCCcEEEEEe
Q 015490          355 SRALVSASMDSSVRVTVI  372 (406)
Q Consensus       355 ~~~l~s~s~dg~i~iw~~  372 (406)
                      +..|+.++.||.|+.+++
T Consensus       376 ~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        376 DDKLLIQARDGTVYAITR  393 (394)
T ss_pred             CCEEEEEeCCceEEEEeC
Confidence            446888899999988764

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.56  E-value=1e-05  Score=74.40  Aligned_cols=179  Identities=17%  Similarity=0.072  Sum_probs=116.3

Q ss_pred             CeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEe---CC-CCEEEEEcCCCeeeeecccCCcceEEEEEEEcCC
Q 015490          189 GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLG---NR-GPGRVWDLASSAVATPLAKENDELFASCRFSPLN  264 (406)
Q Consensus       189 g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s---~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (406)
                      ..+.+-|.+ +.....+......+..-+|+|+++.++..+   .. ..+.++|+.+++....+...  ..-...+|+|++
T Consensus       173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~--g~~~~P~fspDG  249 (425)
T COG0823         173 YELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN--GNNGAPAFSPDG  249 (425)
T ss_pred             ceEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC--CccCCccCCCCC
Confidence            344554543 444545555555788899999999877653   22 35899999988766655422  223357899999


Q ss_pred             CCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEECCCceEEEEeecc
Q 015490          265 NEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA-SG--DISIIDSSSLQVRTAVKKA  341 (406)
Q Consensus       265 ~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~  341 (406)
                      ++   +.+....+..-.|+++|+.+.... .+....+.-..-.|+|||++|+..+. .|  .|.++|++.........  
T Consensus       250 ~~---l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~--  323 (425)
T COG0823         250 SK---LAFSSSRDGSPDIYLMDLDGKNLP-RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF--  323 (425)
T ss_pred             CE---EEEEECCCCCccEEEEcCCCCcce-ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec--
Confidence            86   334444455667888899887633 35444444557889999999998776 33  47777887666543332  


Q ss_pred             cccceEEEEEcCCCCeEEEEECC-Cc--EEEEEecCCc
Q 015490          342 HLGIVTALAFSYDSRALVSASMD-SS--VRVTVIEDKK  376 (406)
Q Consensus       342 ~~~~v~~~~~sp~~~~l~s~s~d-g~--i~iw~~~~~~  376 (406)
                      ..+.-....|+|||++++..+.. |.  |.+.++.++.
T Consensus       324 ~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         324 SGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             cCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence            22222278899999999877643 44  5555554443

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.56  E-value=4.3e-08  Score=92.73  Aligned_cols=219  Identities=12%  Similarity=0.108  Sum_probs=147.0

Q ss_pred             cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEE
Q 015490          104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIF  182 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  182 (406)
                      ++...++.|+..-+|++|+-+.++|++|. .|.+++|+.+....+.             ....|...++.+.-+.||..+
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~-------------s~ncH~SavT~vePs~dgs~~ 1158 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE-------------SVNCHQSAVTLVEPSVDGSTQ 1158 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc-------------cccccccccccccccCCccee
Confidence            45667888999999999999999999997 8889998877532211             112255788889989999877


Q ss_pred             EEeeCCC--eEEEEeCCC-cceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccC---CcceEE
Q 015490          183 AAGSENG--NLRVFKWPS-LEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKE---NDELFA  256 (406)
Q Consensus       183 ~~~~~dg--~i~vwd~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~---~~~~~~  256 (406)
                      ++.+.-.  ...+|++.. +.....+.    .-.++.|+...+.-+.|.......+||+.++....++...   ....-.
T Consensus      1159 Ltsss~S~PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n 1234 (1516)
T KOG1832|consen 1159 LTSSSSSSPLSALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNN 1234 (1516)
T ss_pred             eeeccccCchHHHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcc
Confidence            7654432  467899753 33333332    3467888876555555555567899999998877664321   111235


Q ss_pred             EEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEE
Q 015490          257 SCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRT  336 (406)
Q Consensus       257 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~  336 (406)
                      +..|+|+..-     ++    .||  .+||.+..+.++.|...... ..=.|+|.|.-++.-+     .|||+++.+.++
T Consensus      1235 ~a~FsP~D~L-----Il----ndG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINS-----EIwD~RTF~lLh 1297 (1516)
T KOG1832|consen 1235 LAHFSPCDTL-----IL----NDG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINS-----EIWDMRTFKLLH 1297 (1516)
T ss_pred             ccccCCCcce-----Ee----eCc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeec-----hhhhhHHHHHHh
Confidence            6789998872     22    244  47999987777666544322 2345999999998876     499999988776


Q ss_pred             EeecccccceEEEEEcCCCCeEE
Q 015490          337 AVKKAHLGIVTALAFSYDSRALV  359 (406)
Q Consensus       337 ~~~~~~~~~v~~~~~sp~~~~l~  359 (406)
                      ... ..  .-..+.|...|..+.
T Consensus      1298 ~VP-~L--dqc~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1298 SVP-SL--DQCAVTFNSTGDVMY 1317 (1516)
T ss_pred             cCc-cc--cceEEEeccCccchh
Confidence            654 11  223566766666543

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.50  E-value=0.00034  Score=57.80  Aligned_cols=70  Identities=16%  Similarity=0.068  Sum_probs=54.6

Q ss_pred             CCCEEEEeeCCCeEEEEeCCCcceEeeeeccCC-ceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecc
Q 015490          178 EGTIFAAGSENGNLRVFKWPSLEIILNESEAHA-SVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLA  248 (406)
Q Consensus       178 ~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  248 (406)
                      -|++++.|+..|.+++.+..+|.....+..... .+ .....+++..+..++.|++.+..|.++..++...+
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~-~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKV-RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhheeeeeehhhhcc-ceEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence            456799999999999999999977766654333 22 23456788999999999999999998877766544

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.49  E-value=7.3e-05  Score=69.16  Aligned_cols=231  Identities=13%  Similarity=0.113  Sum_probs=117.8

Q ss_pred             cceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEE
Q 015490          104 QPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFA  183 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  183 (406)
                      -....+....-.+..+.++|+|+++++++++.-.|+.  ......                ...+......|.+.++ +|
T Consensus        23 l~~k~lg~~~~~p~~ls~npngr~v~V~g~geY~iyt--~~~~r~----------------k~~G~g~~~vw~~~n~-yA   83 (443)
T PF04053_consen   23 LSVKELGSCEIYPQSLSHNPNGRFVLVCGDGEYEIYT--ALAWRN----------------KAFGSGLSFVWSSRNR-YA   83 (443)
T ss_dssp             ---EEEEE-SS--SEEEE-TTSSEEEEEETTEEEEEE--TTTTEE----------------EEEEE-SEEEE-TSSE-EE
T ss_pred             EEeccCCCCCcCCeeEEECCCCCEEEEEcCCEEEEEE--ccCCcc----------------cccCceeEEEEecCcc-EE
Confidence            3455566666778999999999999998888877775  111000                0123345678988554 66


Q ss_pred             EeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcC
Q 015490          184 AGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPL  263 (406)
Q Consensus       184 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (406)
                      +-...++|.|+.--+.+....+.... .+..+-.   |..|...+.+ .|.+||..+++.+.++...   .+..+.|+++
T Consensus        84 v~~~~~~I~I~kn~~~~~~k~i~~~~-~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~---~vk~V~Ws~~  155 (443)
T PF04053_consen   84 VLESSSTIKIYKNFKNEVVKSIKLPF-SVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS---AVKYVIWSDD  155 (443)
T ss_dssp             EE-TTS-EEEEETTEE-TT-----SS--EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE-TT
T ss_pred             EEECCCeEEEEEcCccccceEEcCCc-ccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC---CCcEEEEECC
Confidence            66668889996422222211222221 2333322   7777776655 8999999999999988643   3788999999


Q ss_pred             CCCceEEEEEEEcCCCcEEEEEeCCCc-----------eEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCc
Q 015490          264 NNEDYVLYIAAITDRGASIVTWNTTTW-----------KRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSL  332 (406)
Q Consensus       264 ~~~~~~l~~~~~~~~~~~i~~~d~~~~-----------~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~  332 (406)
                      +..     ++..+  +..+++++.+..           .....+..-...|.+.+|..+  .++..+.. .++.  +-.|
T Consensus       156 g~~-----val~t--~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~G  223 (443)
T PF04053_consen  156 GEL-----VALVT--KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNG  223 (443)
T ss_dssp             SSE-----EEEE---S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETT
T ss_pred             CCE-----EEEEe--CCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcC
Confidence            884     34443  334555544332           012222221356888888866  44444434 6665  3333


Q ss_pred             eEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCC
Q 015490          333 QVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDK  375 (406)
Q Consensus       333 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~  375 (406)
                      +.- .+. .-..++.=+...+....+.....|+.|..+.+...
T Consensus       224 e~~-~i~-~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~  264 (443)
T PF04053_consen  224 ETG-IIA-HLDKPLYLLGYLPKENRLYLIDRDGNVISYELDLS  264 (443)
T ss_dssp             EEE-EEE-E-SS--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred             Ccc-eEE-EcCCceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence            322 221 12345666677776678888889999998888653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.48  E-value=0.00018  Score=66.66  Aligned_cols=229  Identities=11%  Similarity=0.090  Sum_probs=133.4

Q ss_pred             CCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEE-EEECCCCCEEEEeeCCCeEEEEeCCCcceEe
Q 015490          125 GDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLA-LTFDSEGTIFAAGSENGNLRVFKWPSLEIIL  203 (406)
Q Consensus       125 ~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~  203 (406)
                      +..++++. ....++-+|..+++...+....            +.+.+ ...  .+..++.+..++.+..+|.++|+.+.
T Consensus       120 ~~~v~v~~-~~g~l~ald~~tG~~~W~~~~~------------~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W  184 (394)
T PRK11138        120 GGKVYIGS-EKGQVYALNAEDGEVAWQTKVA------------GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKW  184 (394)
T ss_pred             CCEEEEEc-CCCEEEEEECCCCCCcccccCC------------CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEee
Confidence            44555554 2336777888877777665431            11111 111  23456677788999999999999887


Q ss_pred             eeeccCCce-----eEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcc------eEEEEEEEc--CCCCceEE
Q 015490          204 NESEAHASV-----KDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDE------LFASCRFSP--LNNEDYVL  270 (406)
Q Consensus       204 ~~~~~~~~i-----~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~------~~~~~~~~~--~~~~~~~l  270 (406)
                      ........+     .....  .+..++.++.++.+..+|..+|+..-........      ....+.-+|  .+.   .+
T Consensus       185 ~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~---~v  259 (394)
T PRK11138        185 TVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGG---VV  259 (394)
T ss_pred             eecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECC---EE
Confidence            664321110     11111  1235677788899999999988765443211100      000011111  122   12


Q ss_pred             EEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEE
Q 015490          271 YIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALA  350 (406)
Q Consensus       271 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~  350 (406)
                      |+   .+.++.+..+|..+++.+-......  ...+.  ..+..+++++.+|.+..+|..+++.+-...........+..
T Consensus       260 y~---~~~~g~l~ald~~tG~~~W~~~~~~--~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~  332 (394)
T PRK11138        260 YA---LAYNGNLVALDLRSGQIVWKREYGS--VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPV  332 (394)
T ss_pred             EE---EEcCCeEEEEECCCCCEEEeecCCC--ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCE
Confidence            22   2357899999999998765543221  11222  24667888889999999999998876543211111122222


Q ss_pred             EcCCCCeEEEEECCCcEEEEEecCCcCCCCch
Q 015490          351 FSYDSRALVSASMDSSVRVTVIEDKKKSGGLN  382 (406)
Q Consensus       351 ~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~  382 (406)
                      .  .+..|+.++.||.|+..|..+++.+.+.+
T Consensus       333 v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~  362 (394)
T PRK11138        333 L--YNGYLVVGDSEGYLHWINREDGRFVAQQK  362 (394)
T ss_pred             E--ECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence            2  24567888999999999999988765443

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.47  E-value=7.7e-06  Score=77.22  Aligned_cols=141  Identities=11%  Similarity=0.150  Sum_probs=95.0

Q ss_pred             ccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCC-----CCEEEEeeCCCeEEEEe
Q 015490          122 HPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSE-----GTIFAAGSENGNLRVFK  195 (406)
Q Consensus       122 sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----g~~l~~~~~dg~i~vwd  195 (406)
                      ..+|.++++++ ||.+.|......              +....+.-+.++.+++++|+     .+.+++|+.-| +.++.
T Consensus        80 ~~~Gey~asCS~DGkv~I~sl~~~--------------~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~e  144 (846)
T KOG2066|consen   80 ILEGEYVASCSDDGKVVIGSLFTD--------------DEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSE  144 (846)
T ss_pred             ccCCceEEEecCCCcEEEeeccCC--------------ccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEeh
Confidence            55799999998 777777655432              22223345578899999998     47899999888 77765


Q ss_pred             CC--CcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcc-----eEEEEEEEcCCCCce
Q 015490          196 WP--SLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDE-----LFASCRFSPLNNEDY  268 (406)
Q Consensus       196 ~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~  268 (406)
                      -+  ..+....+....++|.++.|.  |+++|.++++| |++||..+++.+..++..+..     ....+.|.++.+-  
T Consensus       145 r~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~L--  219 (846)
T KOG2066|consen  145 RNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRL--  219 (846)
T ss_pred             hhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeE--
Confidence            32  111111344556699999996  77888888775 899999999888777654422     2345778877651  


Q ss_pred             EEEEEEEcCCCcEEEEEeCC
Q 015490          269 VLYIAAITDRGASIVTWNTT  288 (406)
Q Consensus       269 ~l~~~~~~~~~~~i~~~d~~  288 (406)
                         ++   +...+|++..++
T Consensus       220 ---VI---GW~d~v~i~~I~  233 (846)
T KOG2066|consen  220 ---VI---GWGDSVKICSIK  233 (846)
T ss_pred             ---EE---ecCCeEEEEEEe
Confidence               22   345567777665

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.47  E-value=0.00049  Score=63.18  Aligned_cols=244  Identities=15%  Similarity=0.177  Sum_probs=163.8

Q ss_pred             CceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCC-EEEEeeCCCeEE
Q 015490          115 LPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGT-IFAAGSENGNLR  192 (406)
Q Consensus       115 ~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~-~l~~~~~dg~i~  192 (406)
                      ....+...|++..+.+.....-.+...+.. ......           ..... .....+++++++. .++....++.|.
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~-----------~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~   99 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQ-----------SLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVS   99 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccc-cceeee-----------eccCCCccccceeeCCCCCeEEEecCCCCeEE
Confidence            567788888887666654222144444433 111110           00111 3345778888887 444555568999


Q ss_pred             EEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeC---CCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceE
Q 015490          193 VFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGN---RGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYV  269 (406)
Q Consensus       193 vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (406)
                      +.|..+.+......... ....++++++++.+.++..   ++++.+.|..+++.......... + ..+++.|++..   
T Consensus       100 vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~-P-~~~a~~p~g~~---  173 (381)
T COG3391         100 VIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNT-P-TGVAVDPDGNK---  173 (381)
T ss_pred             EEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCC-c-ceEEECCCCCe---
Confidence            99987777665554443 5678999999988877765   68899999998888887544332 2 68999999995   


Q ss_pred             EEEEEEcCCCcEEEEEeCCCceEEE-----EeeecCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCceEEEEe-ec
Q 015490          270 LYIAAITDRGASIVTWNTTTWKRIR-----TKQVVREPVSSFNVSADGKLLAVGTAS---GDISIIDSSSLQVRTAV-KK  340 (406)
Q Consensus       270 l~~~~~~~~~~~i~~~d~~~~~~~~-----~~~~~~~~i~~~~~sp~~~~l~~~~~d---g~i~i~d~~~~~~~~~~-~~  340 (406)
                        +......++.|.+.|..+....+     ..... .....+.++|+|+++.+....   +.+...|..++...... ..
T Consensus       174 --vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~  250 (381)
T COG3391         174 --VYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV  250 (381)
T ss_pred             --EEEEecCCCeEEEEeCCCcceeccccccccccC-CCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc
Confidence              33444678999999987765543     12222 234678999999977776554   58999999988777652 21


Q ss_pred             ccccceEEEEEcCCCCeEEEEE-CCCcEEEEEecCCcCCCC
Q 015490          341 AHLGIVTALAFSYDSRALVSAS-MDSSVRVTVIEDKKKSGG  380 (406)
Q Consensus       341 ~~~~~v~~~~~sp~~~~l~s~s-~dg~i~iw~~~~~~~~~~  380 (406)
                      +-. ....+..+|+|..+.+.. ..+.+.+-|..+.+....
T Consensus       251 ~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~  290 (381)
T COG3391         251 GSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKT  290 (381)
T ss_pred             ccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence            222 466789999999888774 447888888887665443

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.47  E-value=3e-05  Score=72.99  Aligned_cols=152  Identities=13%  Similarity=0.030  Sum_probs=98.9

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCC----eEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCC-
Q 015490          166 NVGQQLALTFDSEGTIFAAGSENG----NLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLAS-  240 (406)
Q Consensus       166 ~~~~v~~~~~s~~g~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~-  240 (406)
                      -.+....+.++++|+++++.+.+.    ++...+..+......+...  .+  -++.++|++...  .++.|.+.|.++ 
T Consensus       233 Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~--~i--ea~vkdGK~~~V--~gn~V~VID~~t~  306 (635)
T PRK02888        233 VDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA--RI--EEAVKAGKFKTI--GGSKVPVVDGRKA  306 (635)
T ss_pred             eCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH--HH--HHhhhCCCEEEE--CCCEEEEEECCcc
Confidence            344556789999999998876432    2333322221111111000  00  133457876665  366899999988 


Q ss_pred             ----CeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceE------------EEEeeecCCCeE
Q 015490          241 ----SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKR------------IRTKQVVREPVS  304 (406)
Q Consensus       241 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~------------~~~~~~~~~~i~  304 (406)
                          .+....+...  .....+.++|++++     +.+++..+..+.++|+.+.+.            +.+.....++ .
T Consensus       307 ~~~~~~v~~yIPVG--KsPHGV~vSPDGky-----lyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP-L  378 (635)
T PRK02888        307 ANAGSALTRYVPVP--KNPHGVNTSPDGKY-----FIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP-L  378 (635)
T ss_pred             ccCCcceEEEEECC--CCccceEECCCCCE-----EEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc-c
Confidence                3455555433  33568999999996     778888899999999988553            3444433343 5


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCC
Q 015490          305 SFNVSADGKLLAVGTASGDISIIDSSS  331 (406)
Q Consensus       305 ~~~~sp~~~~l~~~~~dg~i~i~d~~~  331 (406)
                      ..+|+++|+...+-.-|..|..||+.+
T Consensus       379 HTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        379 HTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             eEEECCCCCEEEeEeecceeEEEehHH
Confidence            788999998777777899999999875

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.45  E-value=3.7e-05  Score=73.35  Aligned_cols=196  Identities=15%  Similarity=0.162  Sum_probs=126.1

Q ss_pred             EEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCc-eeEEEEccCCCEEEEEeCCC-----CEEEEEcCCC-----
Q 015490          173 LTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHAS-VKDLSFSPDGKFLVSLGNRG-----PGRVWDLASS-----  241 (406)
Q Consensus       173 ~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-i~~~~~s~~~~~l~s~s~d~-----~i~iwd~~~~-----  241 (406)
                      -+|++.+..++.|+.+|.|.+++ +..+....+..+... |..+....+..+|++.+.|+     .+++||++..     
T Consensus        29 sc~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   29 SCCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             eEEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            35788889999999999998887 344444556555554 44444444446777777654     4899998643     


Q ss_pred             -eee---eecc--cC-CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC----ceEEEEeeecCCCeEEEEEcC
Q 015490          242 -AVA---TPLA--KE-NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT----WKRIRTKQVVREPVSSFNVSA  310 (406)
Q Consensus       242 -~~~---~~~~--~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~----~~~~~~~~~~~~~i~~~~~sp  310 (406)
                       .+.   +.+.  .+ ...++.+++.+.+-.      .++.|-.+|.|..+.-+-    +....-......+|+.+.+..
T Consensus       108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~------~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~  181 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLK------TIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS  181 (933)
T ss_pred             cceeeeeeeeccCCCCCCCcceEEEEEcccc------EEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec
Confidence             222   1111  11 345677888888744      567778899999885321    122222223457999999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490          311 DGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       311 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~  376 (406)
                      +++.++.......|.+|.+....+.......|...+.|-.+++....+++++ +..+.+|+....+
T Consensus       182 d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~  246 (933)
T KOG2114|consen  182 DGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRG  246 (933)
T ss_pred             CCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcc
Confidence            9987444445667999999854433442336777888988887655455544 3458888876544

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.44  E-value=0.0011  Score=61.29  Aligned_cols=73  Identities=19%  Similarity=0.145  Sum_probs=62.4

Q ss_pred             cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490          299 VREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIED  374 (406)
Q Consensus       299 ~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~  374 (406)
                      ....+.+++++|+...++.|+.||+|.+||...+.....   .+.-.++.++|+|+|..+++|+..|.+.+||+.-
T Consensus       258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~---ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA---KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee---eecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            356899999999999999999999999999876644332   2455678999999999999999999999999863

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.42  E-value=9.9e-05  Score=63.19  Aligned_cols=177  Identities=16%  Similarity=0.106  Sum_probs=111.6

Q ss_pred             CCeEEEEeCCCcceEeeeeccCCceeEEE--EccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCC
Q 015490          188 NGNLRVFKWPSLEIILNESEAHASVKDLS--FSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNN  265 (406)
Q Consensus       188 dg~i~vwd~~~~~~~~~~~~~~~~i~~~~--~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (406)
                      +|+|..||..+|+.+....-... +....  ..+++..+++++.++.+..||..+|+.+-.......... .. ...++.
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~-~~-~~~~~~   78 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPG-IGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISG-AP-VVDGGR   78 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSS-CSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGS-GE-EEETTE
T ss_pred             CCEEEEEECCCCCEEEEEECCCC-CCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccc-ee-eecccc
Confidence            68999999999998877654221 22222  233566788888999999999999998776654222111 11 222222


Q ss_pred             CceEEEEEEEcCCCcEEEEEeCCCceEEEEe-eecC---CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecc
Q 015490          266 EDYVLYIAAITDRGASIVTWNTTTWKRIRTK-QVVR---EPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKA  341 (406)
Q Consensus       266 ~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~---~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  341 (406)
                          +++.   ..++.++.+|..+++.+... ....   .....+....++..++++..++.|..+|+++|+.+.... .
T Consensus        79 ----v~v~---~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~-~  150 (238)
T PF13360_consen   79 ----VYVG---TSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYP-V  150 (238)
T ss_dssp             ----EEEE---ETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEE-S
T ss_pred             ----cccc---cceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEee-c
Confidence                2222   25669999999999988874 3221   112223333347888888889999999999999988775 2


Q ss_pred             cccc----------eEEEEEcCCCCeEEEEECCCc-EEEEEecCCcC
Q 015490          342 HLGI----------VTALAFSYDSRALVSASMDSS-VRVTVIEDKKK  377 (406)
Q Consensus       342 ~~~~----------v~~~~~sp~~~~l~s~s~dg~-i~iw~~~~~~~  377 (406)
                      ....          +..-....++ .++.++.++. +.+ |+.+++.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~  195 (238)
T PF13360_consen  151 GEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEK  195 (238)
T ss_dssp             STT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEE
T ss_pred             CCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCE
Confidence            3211          1122222244 6667777775 555 8888873

...

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.42  E-value=8e-05  Score=71.12  Aligned_cols=204  Identities=9%  Similarity=0.064  Sum_probs=124.9

Q ss_pred             EEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-Cc-EEEEEECCCCCEEEEeeCCC-----eE
Q 015490          120 AIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQ-QLALTFDSEGTIFAAGSENG-----NL  191 (406)
Q Consensus       120 ~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-v~~~~~s~~g~~l~~~~~dg-----~i  191 (406)
                      +|++.+..++.|. +|  +||.++..             .+.++.+... .. |..+-...+..+|++.+.|+     .+
T Consensus        30 c~~s~~~~vvigt~~G--~V~~Ln~s-------------~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~ll   94 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADG--RVVILNSS-------------FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLL   94 (933)
T ss_pred             EEcCCCceEEEeeccc--cEEEeccc-------------ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEE
Confidence            4567777777775 55  45555531             1221222222 22 23332233335777766654     59


Q ss_pred             EEEeCCCc------ceE--eeeec---c--CCceeEEEEccCCCEEEEEeCCCCEEEEEc---CCCeeeeecccCCcceE
Q 015490          192 RVFKWPSL------EII--LNESE---A--HASVKDLSFSPDGKFLVSLGNRGPGRVWDL---ASSAVATPLAKENDELF  255 (406)
Q Consensus       192 ~vwd~~~~------~~~--~~~~~---~--~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~---~~~~~~~~~~~~~~~~~  255 (406)
                      +||+++.-      .+.  ..+..   .  ..++.+++.+.+-+.+|+|-.+|.|..+.-   +.......+......+|
T Consensus        95 kiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pI  174 (933)
T KOG2114|consen   95 KIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPI  174 (933)
T ss_pred             EEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCc
Confidence            99998532      222  11222   1  337889999999889999999999988842   22222333444556789


Q ss_pred             EEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceE-EEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceE
Q 015490          256 ASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKR-IRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQV  334 (406)
Q Consensus       256 ~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~  334 (406)
                      +.+.+..++..  .+|++.    ...|.+|.+....+ ...+..++..+.|-.+++....+++++ +..+.+|+.+..++
T Consensus       175 TgL~~~~d~~s--~lFv~T----t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~  247 (933)
T KOG2114|consen  175 TGLALRSDGKS--VLFVAT----TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGP  247 (933)
T ss_pred             eeeEEecCCce--eEEEEe----cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcce
Confidence            99999999885  333332    45688888874442 444677778888999987655455554 44599999987777


Q ss_pred             EEEeecccccc
Q 015490          335 RTAVKKAHLGI  345 (406)
Q Consensus       335 ~~~~~~~~~~~  345 (406)
                      -..+..+|...
T Consensus       248 cfaf~~g~kk~  258 (933)
T KOG2114|consen  248 CFAFEVGEKKE  258 (933)
T ss_pred             eeeecCCCeEE
Confidence            77765456544

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.32  E-value=1.8e-05  Score=75.77  Aligned_cols=183  Identities=13%  Similarity=0.137  Sum_probs=129.7

Q ss_pred             CCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEE
Q 015490          178 EGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFAS  257 (406)
Q Consensus       178 ~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  257 (406)
                      ++..++.|+....+..+|+++.+......-..+.|.-+..  +++.+.+|...|+|.+-|.++.+.++++..|.+. +  
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~s-i--  220 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGS-I--  220 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccc-e--
Confidence            3456777777788889999888776655444434555554  5788999999999999999999999999877553 3  


Q ss_pred             EEEEcCCCCceEEEEEEEc--------CCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCC-CCEEEEEeCCCcEEEEE
Q 015490          258 CRFSPLNNEDYVLYIAAIT--------DRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSAD-GKLLAVGTASGDISIID  328 (406)
Q Consensus       258 ~~~~~~~~~~~~l~~~~~~--------~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~-~~~l~~~~~dg~i~i~d  328 (406)
                      ..|+-.|+.     +++.|        .-|.-|+|||++..+.+.-+..+.++ .-+.|+|. ...+++++..|...+.|
T Consensus       221 SDfDv~GNl-----LitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd  294 (1118)
T KOG1275|consen  221 SDFDVQGNL-----LITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVD  294 (1118)
T ss_pred             eeeeccCCe-----EEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeecc
Confidence            344555542     11211        12567899999998877666655443 55778884 34678888899999999


Q ss_pred             CC---CceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEE
Q 015490          329 SS---SLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTV  371 (406)
Q Consensus       329 ~~---~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~  371 (406)
                      ..   +...-..........+..+.+|++|..|+.|..+|.|.+|.
T Consensus       295 ~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  295 TATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            43   32111111112334489999999999999999999999998

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.29  E-value=0.00098  Score=60.95  Aligned_cols=253  Identities=19%  Similarity=0.183  Sum_probs=134.6

Q ss_pred             CceEEEEccCCCeEEEEe-cCCeEEEEEecccccc----eee-------------------ccee--c----cceeeecc
Q 015490          115 LPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTE----IRR-------------------LGVK--I----SEKVLSQL  164 (406)
Q Consensus       115 ~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~----~~~-------------------~~~~--~----~~~~~~~~  164 (406)
                      .|+.+.|+++...|+++. .|.+-||.|..+....    ...                   +..+  +    .-.+...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            478999999988888887 9999999998764322    000                   0000  0    01111111


Q ss_pred             c-ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeee--c------cCCceeEEEEcc-----CC---CEEEEE
Q 015490          165 E-NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNES--E------AHASVKDLSFSP-----DG---KFLVSL  227 (406)
Q Consensus       165 ~-~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~--~------~~~~i~~~~~s~-----~~---~~l~s~  227 (406)
                      + ..++|++++.| |=.++|.|..+|.+.|.|++....+..-.  .      ....|+++.|+.     |+   -.+++|
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            1 24789999998 44599999999999999998776655421  1      112678888852     33   368888


Q ss_pred             eCCCCEEEEEcC--C-Ceeeeecc---cCCcceEEEE-EEEcCCCCc-----------------eEEEEEEEcCCCcEEE
Q 015490          228 GNRGPGRVWDLA--S-SAVATPLA---KENDELFASC-RFSPLNNED-----------------YVLYIAAITDRGASIV  283 (406)
Q Consensus       228 s~d~~i~iwd~~--~-~~~~~~~~---~~~~~~~~~~-~~~~~~~~~-----------------~~l~~~~~~~~~~~i~  283 (406)
                      ...|.+.+|.+.  . +.....+.   ..+...+..+ .++.+....                 ..+ ++++  ....++
T Consensus       162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~-vVvv--Se~~ir  238 (395)
T PF08596_consen  162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGY-VVVV--SESDIR  238 (395)
T ss_dssp             ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EE-EEEE---SSEEE
T ss_pred             eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcE-EEEE--cccceE
Confidence            999999999764  1 21111111   1122333333 243322110                 112 2222  367899


Q ss_pred             EEeCCCceEEEEeeecCCCeEEEEEc-----CCCCEEEEEeCCCcEEEEECCCceEEEEeecc---cccceEEEEEcCCC
Q 015490          284 TWNTTTWKRIRTKQVVREPVSSFNVS-----ADGKLLAVGTASGDISIIDSSSLQVRTAVKKA---HLGIVTALAFSYDS  355 (406)
Q Consensus       284 ~~d~~~~~~~~~~~~~~~~i~~~~~s-----p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~sp~~  355 (406)
                      ++...+.+..............+++-     ..+..|++-..+|.+++|.+...+.+..+...   ....+....++++|
T Consensus       239 v~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~G  318 (395)
T PF08596_consen  239 VFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNG  318 (395)
T ss_dssp             EE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS
T ss_pred             EEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCC
Confidence            99988777655444221223334442     35667888889999999999998888777521   22335567788999


Q ss_pred             CeEEEEECCCcEEEEEe
Q 015490          356 RALVSASMDSSVRVTVI  372 (406)
Q Consensus       356 ~~l~s~s~dg~i~iw~~  372 (406)
                      ..++-.+. ..+.++.+
T Consensus       319 di~~~~gp-sE~~l~sv  334 (395)
T PF08596_consen  319 DIFYWTGP-SEIQLFSV  334 (395)
T ss_dssp             -EEEE-SS-SEEEEEEE
T ss_pred             CEEEEeCc-ccEEEEEE
Confidence            87765543 34444444

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.29  E-value=0.0012  Score=57.89  Aligned_cols=206  Identities=16%  Similarity=0.205  Sum_probs=120.6

Q ss_pred             ceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEE
Q 015490          116 PYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVF  194 (406)
Q Consensus       116 v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vw  194 (406)
                      ...++++.|++++++.. .-.-.|-.+|...            .+.+..+...+...-.-..+  +-|.+-|.||.+.-.
T Consensus        97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~------------~kvv~ei~~PGC~~iyP~~~--~~F~~lC~DGsl~~v  162 (342)
T PF06433_consen   97 KNMFALSADGKFLYVQNFTPATSVTVVDLAA------------KKVVGEIDTPGCWLIYPSGN--RGFSMLCGDGSLLTV  162 (342)
T ss_dssp             GGGEEE-TTSSEEEEEEESSSEEEEEEETTT------------TEEEEEEEGTSEEEEEEEET--TEEEEEETTSCEEEE
T ss_pred             ccceEEccCCcEEEEEccCCCCeEEEEECCC------------CceeeeecCCCEEEEEecCC--CceEEEecCCceEEE
Confidence            34568888999888765 3333344455543            33333333343322222222  347777889999888


Q ss_pred             eCC-CcceEeeee----ccCC-ceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeee--ecccC------Cc---ceEEE
Q 015490          195 KWP-SLEIILNES----EAHA-SVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT--PLAKE------ND---ELFAS  257 (406)
Q Consensus       195 d~~-~~~~~~~~~----~~~~-~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~--~~~~~------~~---~~~~~  257 (406)
                      .+. .|+......    .... .+..-++...+..++..+.+|.|+--|+.......  .+...      .+   ....-
T Consensus       163 ~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~  242 (342)
T PF06433_consen  163 TLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQL  242 (342)
T ss_dssp             EETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-
T ss_pred             EECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceee
Confidence            886 555432221    1112 23344555666677778999999999887654221  11110      00   01224


Q ss_pred             EEEEcCCCCceEEEEEEEcCCC-------cEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCC-EEEEEe-CCCcEEEEE
Q 015490          258 CRFSPLNNEDYVLYIAAITDRG-------ASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGK-LLAVGT-ASGDISIID  328 (406)
Q Consensus       258 ~~~~~~~~~~~~l~~~~~~~~~-------~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~-~l~~~~-~dg~i~i~d  328 (406)
                      +++++..+.   +|++.-.+.+       ..|.++|+.+++.+.++... .++.++..+.+.+ +|++.+ .++.+.+||
T Consensus       243 ~A~~~~~~r---lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D  318 (342)
T PF06433_consen  243 IAYHAASGR---LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYD  318 (342)
T ss_dssp             EEEETTTTE---EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred             eeeccccCe---EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence            677776664   4444433222       36999999999999998864 4577999998776 554443 578999999


Q ss_pred             CCCceEEEEee
Q 015490          329 SSSLQVRTAVK  339 (406)
Q Consensus       329 ~~~~~~~~~~~  339 (406)
                      ..+++.++.+.
T Consensus       319 ~~tGk~~~~~~  329 (342)
T PF06433_consen  319 AATGKLVRSIE  329 (342)
T ss_dssp             TTT--EEEEE-
T ss_pred             CcCCcEEeehh
Confidence            99999999886

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.28  E-value=0.00091  Score=61.44  Aligned_cols=208  Identities=18%  Similarity=0.229  Sum_probs=141.3

Q ss_pred             CCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeC---C
Q 015490          114 DLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE---N  188 (406)
Q Consensus       114 ~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~---d  188 (406)
                      .....++.++.+..+++..  ++.+.+  ++.........            ..-......++++++++.+.++..   +
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~~~v~v--id~~~~~~~~~------------~~vG~~P~~~~~~~~~~~vYV~n~~~~~  139 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDSNTVSV--IDTATNTVLGS------------IPVGLGPVGLAVDPDGKYVYVANAGNGN  139 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCCCeEEE--EcCcccceeeE------------eeeccCCceEEECCCCCEEEEEecccCC
Confidence            4456788999998777665  455555  44332222211            111225567999999987777655   6


Q ss_pred             CeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEe-CCCCEEEEEcCCCeeee-ec--ccCCcceEEEEEEEcCC
Q 015490          189 GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLG-NRGPGRVWDLASSAVAT-PL--AKENDELFASCRFSPLN  264 (406)
Q Consensus       189 g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s-~d~~i~iwd~~~~~~~~-~~--~~~~~~~~~~~~~~~~~  264 (406)
                      +++.+.|-.+++..........+ ..++++|+|+.++.+. .++.+.+.|........ .-  ..........+.+++++
T Consensus       140 ~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g  218 (381)
T COG3391         140 NTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDG  218 (381)
T ss_pred             ceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCC
Confidence            89999998888887775544445 8999999999777665 68899999976655443 10  01112223468899999


Q ss_pred             CCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCC-CeEEEEEcCCCCEEEEEeC-CCcEEEEECCCceEEEEee
Q 015490          265 NEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVRE-PVSSFNVSADGKLLAVGTA-SGDISIIDSSSLQVRTAVK  339 (406)
Q Consensus       265 ~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~  339 (406)
                      .+   +|+....+.++.+...|..++........... ....+..+|+|+++.+... .+.+.+.|..+........
T Consensus       219 ~~---~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~  292 (381)
T COG3391         219 NR---VYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP  292 (381)
T ss_pred             CE---EEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence            85   45555444458999999998776665222212 4567899999999988855 4889999998877776654

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.25  E-value=0.00056  Score=63.95  Aligned_cols=196  Identities=15%  Similarity=0.157  Sum_probs=112.7

Q ss_pred             EEEEEECCCCCEEEEe-eCC----CeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCC-----------CE
Q 015490          170 QLALTFDSEGTIFAAG-SEN----GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRG-----------PG  233 (406)
Q Consensus       170 v~~~~~s~~g~~l~~~-~~d----g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~-----------~i  233 (406)
                      +....+||||+++|.+ +..    ..++++|+++++.+....... ....+.|.+|++.|+....+.           .|
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            3467899999998876 333    369999999997765332221 223499999999877765433           37


Q ss_pred             EEEEcCCCeee--eecccCCcce-EEEEEEEcCCCCceEEEEEEEcCCC-cEEEEEeCCCc----eEEEEeeecCCCe-E
Q 015490          234 RVWDLASSAVA--TPLAKENDEL-FASCRFSPLNNEDYVLYIAAITDRG-ASIVTWNTTTW----KRIRTKQVVREPV-S  304 (406)
Q Consensus       234 ~iwd~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~-~~i~~~d~~~~----~~~~~~~~~~~~i-~  304 (406)
                      +.|.+.+....  ..+....... ...+..+++++.   +++......+ ..+++.|+...    .....+......+ .
T Consensus       205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~---l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~  281 (414)
T PF02897_consen  205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRY---LFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEY  281 (414)
T ss_dssp             EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSE---EEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EE
T ss_pred             EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccE---EEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEE
Confidence            77887765432  3333333333 567888999884   5555555666 78999999874    2333333333333 3


Q ss_pred             EEEEcCCCCEEEEEeC---CCcEEEEECCCceE---EEEeeccccc--ceEEEEEcCCCCeEE-EEECCC--cEEEEEec
Q 015490          305 SFNVSADGKLLAVGTA---SGDISIIDSSSLQV---RTAVKKAHLG--IVTALAFSYDSRALV-SASMDS--SVRVTVIE  373 (406)
Q Consensus       305 ~~~~sp~~~~l~~~~~---dg~i~i~d~~~~~~---~~~~~~~~~~--~v~~~~~sp~~~~l~-s~s~dg--~i~iw~~~  373 (406)
                      .+... .+.+++....   .+.|.-.++.+...   ...+. .|..  .+..+...  +.+|+ ....++  .|+++++.
T Consensus       282 ~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~-~~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  282 YVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI-PEDEDVSLEDVSLF--KDYLVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             EEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---SSSEEEEEEEEE--TTEEEEEEEETTEEEEEEEETT
T ss_pred             EEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEc-CCCCceeEEEEEEE--CCEEEEEEEECCccEEEEEECC
Confidence            34333 4444443332   46677788876552   22332 3444  35555543  44444 444454  57888887

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.24  E-value=0.00039  Score=63.34  Aligned_cols=225  Identities=16%  Similarity=0.123  Sum_probs=119.4

Q ss_pred             ccCCCeEEEEec--------CCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEE
Q 015490          122 HPHGDGIICALQ--------NSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRV  193 (406)
Q Consensus       122 sp~~~~l~~~~~--------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~v  193 (406)
                      |||+++++...+        ....+|.++..+++....            ......+....|||+|+.++... ++.|.+
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l------------~~~~~~~~~~~~sP~g~~~~~v~-~~nly~   67 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPL------------TPPPPKLQDAKWSPDGKYIAFVR-DNNLYL   67 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEES------------S-EETTBSEEEE-SSSTEEEEEE-TTEEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEEC------------cCCccccccceeecCCCeeEEEe-cCceEE
Confidence            688888877431        223556666554321111            11145677889999999998875 579999


Q ss_pred             EeCCCcceEeeeeccC-----------------CceeEEEEccCCCEEEEEeC-CCCEEEEEcCCCeeeeecccC-Ccce
Q 015490          194 FKWPSLEIILNESEAH-----------------ASVKDLSFSPDGKFLVSLGN-RGPGRVWDLASSAVATPLAKE-NDEL  254 (406)
Q Consensus       194 wd~~~~~~~~~~~~~~-----------------~~i~~~~~s~~~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~~-~~~~  254 (406)
                      ++..++...+......                 +.-..+-||||+++|+.... +..+..+.+...     .... .-..
T Consensus        68 ~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~-----~~~~~~yp~  142 (353)
T PF00930_consen   68 RDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDY-----SPPDSQYPE  142 (353)
T ss_dssp             ESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEE-----SSSTESS-E
T ss_pred             EECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeecc-----CCccccCCc
Confidence            9987775443322221                 12356889999999998754 344444433110     0000 0112


Q ss_pred             EEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEe-e----ecCCCeEEEEEcCCCCEEEEEeC--C---CcE
Q 015490          255 FASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTK-Q----VVREPVSSFNVSADGKLLAVGTA--S---GDI  324 (406)
Q Consensus       255 ~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~-~----~~~~~i~~~~~sp~~~~l~~~~~--d---g~i  324 (406)
                      +..+.+-.-|..          ...-.+.++|+.+++....- .    .....+..+.|.++++.|++.-.  +   ..+
T Consensus       143 ~~~~~YPk~G~~----------np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l  212 (353)
T PF00930_consen  143 VESIRYPKAGDP----------NPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDL  212 (353)
T ss_dssp             EEEEE--BTTS-------------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEE
T ss_pred             ccccccCCCCCc----------CCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEE
Confidence            334444333332          11235677888877653211 1    23456889999999984444322  2   237


Q ss_pred             EEEECCCceEEEEeecccccce---EEEEEc-CCCC-eEEEEECCCcEEEEEecC
Q 015490          325 SIIDSSSLQVRTAVKKAHLGIV---TALAFS-YDSR-ALVSASMDSSVRVTVIED  374 (406)
Q Consensus       325 ~i~d~~~~~~~~~~~~~~~~~v---~~~~~s-p~~~-~l~s~s~dg~i~iw~~~~  374 (406)
                      .++|..++...........+.|   ....|. +++. +|.....||.-+|+-++.
T Consensus       213 ~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~  267 (353)
T PF00930_consen  213 VLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDL  267 (353)
T ss_dssp             EEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEET
T ss_pred             EEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcc
Confidence            7788877655433332334443   255554 5554 444555777666665543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.23  E-value=0.001  Score=58.55  Aligned_cols=222  Identities=16%  Similarity=0.136  Sum_probs=127.6

Q ss_pred             EEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCC
Q 015490          118 RMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWP  197 (406)
Q Consensus       118 ~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~  197 (406)
                      +-.|.++...|+-+.=..-+|+.|+..+++             ...+...+.+.++..-..+..|+++.  .-+.+++.+
T Consensus        29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~-------------~~~~~~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~   93 (307)
T COG3386          29 GPVWDPDRGALLWVDILGGRIHRLDPETGK-------------KRVFPSPGGFSSGALIDAGGRLIACE--HGVRLLDPD   93 (307)
T ss_pred             CccCcCCCCEEEEEeCCCCeEEEecCCcCc-------------eEEEECCCCcccceeecCCCeEEEEc--cccEEEecc
Confidence            346778888777666333478888765332             12223344444444444444454443  236677766


Q ss_pred             CcceEeeeeccC-----CceeEEEEccCCCEEEEEeC-----C----CCEEEEEcC-CCeeeeecccCCcceEEEEEEEc
Q 015490          198 SLEIILNESEAH-----ASVKDLSFSPDGKFLVSLGN-----R----GPGRVWDLA-SSAVATPLAKENDELFASCRFSP  262 (406)
Q Consensus       198 ~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~s~s~-----d----~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~  262 (406)
                      ++.....+....     ...+++...|+|.+-++...     .    ..-.+|-+. .+...+.+.. +-...+.++|||
T Consensus        94 ~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~-~~~~~NGla~Sp  172 (307)
T COG3386          94 TGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDD-DLTIPNGLAFSP  172 (307)
T ss_pred             CCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecC-cEEecCceEECC
Confidence            665532222211     15678889999986665433     0    112445444 3444444332 233456899999


Q ss_pred             CCCCceEEEEEEEcCCCcEEEEEeCCC--ce-----EEEEeeecCCCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCceE
Q 015490          263 LNNEDYVLYIAAITDRGASIVTWNTTT--WK-----RIRTKQVVREPVSSFNVSADGKLLAVGTASG-DISIIDSSSLQV  334 (406)
Q Consensus       263 ~~~~~~~l~~~~~~~~~~~i~~~d~~~--~~-----~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg-~i~i~d~~~~~~  334 (406)
                      +++.   +|  .+-+..+.|+-|++..  +.     ....+....+..-.++...+|++.+++..+| .|.+|+.+ ++.
T Consensus       173 Dg~t---ly--~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l  246 (307)
T COG3386         173 DGKT---LY--VADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKL  246 (307)
T ss_pred             CCCE---EE--EEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcE
Confidence            9985   33  4445567888887652  11     1122222345556788888898876555554 89999988 888


Q ss_pred             EEEeecccccceEEEEEcC-CCCeEEEEE
Q 015490          335 RTAVKKAHLGIVTALAFSY-DSRALVSAS  362 (406)
Q Consensus       335 ~~~~~~~~~~~v~~~~~sp-~~~~l~s~s  362 (406)
                      +..+. .+...+++++|-- +.+.|...+
T Consensus       247 ~~~i~-lP~~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         247 LGEIK-LPVKRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             EEEEE-CCCCCCccceEeCCCcCEEEEEe
Confidence            88886 4546788888854 445554333

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.23  E-value=0.0023  Score=54.42  Aligned_cols=196  Identities=13%  Similarity=0.218  Sum_probs=108.5

Q ss_pred             CcEEEEEECCCC-CEEEEeeCCCeEEEEeCCCcceEeeeecc-CCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCe---
Q 015490          168 GQQLALTFDSEG-TIFAAGSENGNLRVFKWPSLEIILNESEA-HASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSA---  242 (406)
Q Consensus       168 ~~v~~~~~s~~g-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~---  242 (406)
                      ..+..++|+|+. .++++....+.|..++. +|+.+..+.-. .+..-.|++..++.++++.-.++.+.++++....   
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~  100 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL  100 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred             CCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccccc
Confidence            468999999975 57777788889988886 47777666433 3467889998888777766678899999884321   


Q ss_pred             ---eeeec--cc--CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeC--CCceE-EEEe------eecCCCeEEE
Q 015490          243 ---VATPL--AK--ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNT--TTWKR-IRTK------QVVREPVSSF  306 (406)
Q Consensus       243 ---~~~~~--~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~--~~~~~-~~~~------~~~~~~i~~~  306 (406)
                         ....+  ..  ..+..+..++|.+.++.   + +++--..-..|+-++.  ..... ....      ......+.++
T Consensus       101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~---L-~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l  176 (248)
T PF06977_consen  101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNR---L-FVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGL  176 (248)
T ss_dssp             -EEEEEEEE---S---SS--EEEEEETTTTE---E-EEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EE
T ss_pred             chhhceEEecccccCCCcceEEEEEcCCCCE---E-EEEeCCCChhhEEEccccCccceeeccccccccccceeccccce
Confidence               11112  11  23445889999999885   3 3343333334555554  11111 1111      1122457899


Q ss_pred             EEcCC-CCEEEEEeCCCcEEEEECCCceEEEEee--cccc------cceEEEEEcCCCCeEEEEECCCcEEEE
Q 015490          307 NVSAD-GKLLAVGTASGDISIIDSSSLQVRTAVK--KAHL------GIVTALAFSYDSRALVSASMDSSVRVT  370 (406)
Q Consensus       307 ~~sp~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~------~~v~~~~~sp~~~~l~s~s~dg~i~iw  370 (406)
                      +++|. +.+++....+..|..+| .+|+.+..+.  .+..      ...-.|+|.++|++.++ +.-+..+++
T Consensus       177 ~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f  247 (248)
T PF06977_consen  177 SYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF  247 (248)
T ss_dssp             EEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred             EEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence            99995 45666666688899999 5677666553  1111      23568999999975554 566655554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.23  E-value=0.0005  Score=66.23  Aligned_cols=190  Identities=11%  Similarity=0.055  Sum_probs=107.8

Q ss_pred             cCCCCceEEEEccCCCeEEEEe-------cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEE
Q 015490          111 TDSDLPYRMAIHPHGDGIICAL-------QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFA  183 (406)
Q Consensus       111 ~h~~~v~~~~~sp~~~~l~~~~-------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  183 (406)
                      +....+.+.+++|+|+.+++..       +..-.||..+... .. ..         +  ..+ .....-.|+|||+.++
T Consensus       347 g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~---------l--t~g-~~~t~PsWspDG~~lw  412 (591)
T PRK13616        347 GQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQ---------V--LEG-HSLTRPSWSLDADAVW  412 (591)
T ss_pred             ccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-ee---------e--ecC-CCCCCceECCCCCceE
Confidence            3335678999999999988764       4456888877421 11 11         1  112 2367789999988777


Q ss_pred             EeeCC------------CeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEE---EEcCCCee-e---
Q 015490          184 AGSEN------------GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRV---WDLASSAV-A---  244 (406)
Q Consensus       184 ~~~~d------------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~i---wd~~~~~~-~---  244 (406)
                      +....            +.+.+.+++.++...   .....|..+.|||||.+++... ++.|++   -....|.. +   
T Consensus       413 ~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~  488 (591)
T PRK13616        413 VVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNP  488 (591)
T ss_pred             EEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeeccc
Confidence            76432            233333444333322   2234799999999999988876 467766   34334431 1   


Q ss_pred             eecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeee--cCCCeEEEEEcCCCCEEEEEeCCC
Q 015490          245 TPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQV--VREPVSSFNVSADGKLLAVGTASG  322 (406)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~i~~~~~sp~~~~l~~~~~dg  322 (406)
                      ..+.......+..+.|..++.    |+ +...+.+..++..++...... .+..  ...++.+++-+++  .++....++
T Consensus       489 ~~l~~~l~~~~~~l~W~~~~~----L~-V~~~~~~~~v~~v~vDG~~~~-~~~~~n~~~~v~~vaa~~~--~iyv~~~~g  560 (591)
T PRK13616        489 REVGPGLGDTAVSLDWRTGDS----LV-VGRSDPEHPVWYVNLDGSNSD-ALPSRNLSAPVVAVAASPS--TVYVTDARA  560 (591)
T ss_pred             EEeecccCCccccceEecCCE----EE-EEecCCCCceEEEecCCcccc-ccCCCCccCceEEEecCCc--eEEEEcCCc
Confidence            112222233346789999886    22 334445555666666533221 1122  1355667776653  455556666


Q ss_pred             cEEE
Q 015490          323 DISI  326 (406)
Q Consensus       323 ~i~i  326 (406)
                      .+.+
T Consensus       561 ~~~l  564 (591)
T PRK13616        561 VLQL  564 (591)
T ss_pred             eEEe
Confidence            4433

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.23  E-value=0.0031  Score=60.06  Aligned_cols=239  Identities=13%  Similarity=0.105  Sum_probs=134.3

Q ss_pred             CeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEee---------CCCeEEEEeC
Q 015490          126 DGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGS---------ENGNLRVFKW  196 (406)
Q Consensus       126 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~---------~dg~i~vwd~  196 (406)
                      ..++++. ....|+-+|..+++...+.........  ......   ...+  .+..++.++         .+|.+..+|.
T Consensus       111 ~~V~v~~-~~g~v~AlD~~TG~~~W~~~~~~~~~~--~~~i~s---sP~v--~~~~v~vg~~~~~~~~~~~~g~v~alD~  182 (488)
T cd00216         111 RKVFFGT-FDGRLVALDAETGKQVWKFGNNDQVPP--GYTMTG---APTI--VKKLVIIGSSGAEFFACGVRGALRAYDV  182 (488)
T ss_pred             CeEEEec-CCCeEEEEECCCCCEeeeecCCCCcCc--ceEecC---CCEE--ECCEEEEeccccccccCCCCcEEEEEEC
Confidence            4455543 233667778877777766544211000  000000   0111  123444443         4688999999


Q ss_pred             CCcceEeeeeccCC--------------------ce-eEEEEccCCCEEEEEeCCC------------------CEEEEE
Q 015490          197 PSLEIILNESEAHA--------------------SV-KDLSFSPDGKFLVSLGNRG------------------PGRVWD  237 (406)
Q Consensus       197 ~~~~~~~~~~~~~~--------------------~i-~~~~~s~~~~~l~s~s~d~------------------~i~iwd  237 (406)
                      .+|+.+........                    .+ ...++.+.+..++.++.++                  .+.-+|
T Consensus       183 ~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald  262 (488)
T cd00216         183 ETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALD  262 (488)
T ss_pred             CCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEc
Confidence            99988766543211                    01 1234444566777777654                  688899


Q ss_pred             cCCCeeeeecccCCcc-----eEEEEEEE----cCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEE
Q 015490          238 LASSAVATPLAKENDE-----LFASCRFS----PLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNV  308 (406)
Q Consensus       238 ~~~~~~~~~~~~~~~~-----~~~~~~~~----~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~  308 (406)
                      ..+|+..-.+......     ......+.    -++..   ..++..+..+|.++.+|.++++.+-......   ..+..
T Consensus       263 ~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~---~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~  336 (488)
T cd00216         263 ADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKP---VPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAY  336 (488)
T ss_pred             CCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCe---eEEEEEECCCceEEEEECCCCcEeeEeEeec---ccccc
Confidence            9999887665432111     00001111    12221   1234455678999999999999877665321   22344


Q ss_pred             cCCCCEEEEE------------------eCCCcEEEEECCCceEEEEeecc-cc------cce--EEEEEcCCCCeEEEE
Q 015490          309 SADGKLLAVG------------------TASGDISIIDSSSLQVRTAVKKA-HL------GIV--TALAFSYDSRALVSA  361 (406)
Q Consensus       309 sp~~~~l~~~------------------~~dg~i~i~d~~~~~~~~~~~~~-~~------~~v--~~~~~sp~~~~l~s~  361 (406)
                      +|  ..++.+                  ..+|.+.-+|+.+++.+-+.... +.      .+.  ..+..  .+..|+.+
T Consensus       337 ~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g  412 (488)
T cd00216         337 DP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAG  412 (488)
T ss_pred             CC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEE
Confidence            44  333332                  23678899999999887766422 00      111  11222  45678888


Q ss_pred             ECCCcEEEEEecCCcCCCCch
Q 015490          362 SMDSSVRVTVIEDKKKSGGLN  382 (406)
Q Consensus       362 s~dg~i~iw~~~~~~~~~~~~  382 (406)
                      +.||.|+.+|.++++.+-+++
T Consensus       413 ~~dG~l~ald~~tG~~lW~~~  433 (488)
T cd00216         413 AADGYFRAFDATTGKELWKFR  433 (488)
T ss_pred             CCCCeEEEEECCCCceeeEEE
Confidence            999999999999998865544

The alignment model contains an 8-bladed beta-propeller.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.22  E-value=0.0041  Score=58.14  Aligned_cols=244  Identities=17%  Similarity=0.142  Sum_probs=129.3

Q ss_pred             eEEEEccCCCeEEEEe--cC--CeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCC----
Q 015490          117 YRMAIHPHGDGIICAL--QN--SCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSEN----  188 (406)
Q Consensus       117 ~~~~~sp~~~~l~~~~--~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d----  188 (406)
                      ....++|+|++++.+-  +|  ...++.++..+++.+..           .+... ....+.|.+|++.|+....+    
T Consensus       127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-----------~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~  194 (414)
T PF02897_consen  127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-----------GIENP-KFSSVSWSDDGKGFFYTRFDEDQR  194 (414)
T ss_dssp             EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-----------EEEEE-ESEEEEECTTSSEEEEEECSTTTS
T ss_pred             eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-----------ccccc-ccceEEEeCCCCEEEEEEeCcccc
Confidence            4678999999998763  33  35677777766533221           01111 11239999998877665432    


Q ss_pred             -------CeEEEEeCCCcceE--eeeeccCC-c-eeEEEEccCCCEEEEEeC---C-CCEEEEEcCCC----eeeeeccc
Q 015490          189 -------GNLRVFKWPSLEII--LNESEAHA-S-VKDLSFSPDGKFLVSLGN---R-GPGRVWDLASS----AVATPLAK  249 (406)
Q Consensus       189 -------g~i~vwd~~~~~~~--~~~~~~~~-~-i~~~~~s~~~~~l~s~s~---d-~~i~iwd~~~~----~~~~~~~~  249 (406)
                             ..|+.|.+.+....  ..+..... . ...+..++|+++|+..+.   + ..+.+.|+..+    .....+..
T Consensus       195 ~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~  274 (414)
T PF02897_consen  195 TSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP  274 (414)
T ss_dssp             S-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE
T ss_pred             cccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC
Confidence                   24788888765432  23333333 2 568889999998775432   2 34777788764    22333332


Q ss_pred             CCcceEEEEEEEcCCCCceEEEEEE-EcCCCcEEEEEeCCCceE---EEEeeecCCCeEEEEEcCCCCEEEEEeC-CC--
Q 015490          250 ENDELFASCRFSPLNNEDYVLYIAA-ITDRGASIVTWNTTTWKR---IRTKQVVREPVSSFNVSADGKLLAVGTA-SG--  322 (406)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~d~~~~~~---~~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg--  322 (406)
                      ........+...  +..   +++.. -...++.|...++.....   ...+..+...+.--.+...+++|+.... ++  
T Consensus       275 ~~~~~~~~v~~~--~~~---~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~  349 (414)
T PF02897_consen  275 REDGVEYYVDHH--GDR---LYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSS  349 (414)
T ss_dssp             SSSS-EEEEEEE--TTE---EEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEE
T ss_pred             CCCceEEEEEcc--CCE---EEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCcc
Confidence            223323333333  332   33333 234467888888876652   2244444443333333344555555444 43  


Q ss_pred             cEEEEECCCceEEEEeecccccceEEEEEcCCCCeE-EEEE---CCCcEEEEEecCCcC
Q 015490          323 DISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRAL-VSAS---MDSSVRVTVIEDKKK  377 (406)
Q Consensus       323 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~s~s---~dg~i~iw~~~~~~~  377 (406)
                      .|+++++..+.....+.....+.|..+...+++..+ ++.+   .-+++..||+.+++.
T Consensus       350 ~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  350 RLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             EEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             EEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence            488999984444444432344556666655655443 3322   235788888888764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.22  E-value=0.0036  Score=55.89  Aligned_cols=279  Identities=16%  Similarity=0.144  Sum_probs=133.7

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCC-CCceEEEEccCCCeEEEEecCCeEEEEEecccc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDS-DLPYRMAIHPHGDGIICALQNSCRLFEWDEVEN  146 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~  146 (406)
                      +++.+++++.-       .+.-.++.++.++     ..+.+|..+. .......++|+.+.++...++. .|+.++..+.
T Consensus        46 dG~kllF~s~~-------dg~~nly~lDL~t-----~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~-~l~~vdL~T~  112 (386)
T PF14583_consen   46 DGRKLLFASDF-------DGNRNLYLLDLAT-----GEITQLTDGPGDNTFGGFLSPDDRALYYVKNGR-SLRRVDLDTL  112 (386)
T ss_dssp             TS-EEEEEE-T-------TSS-EEEEEETTT------EEEE---SS-B-TTT-EE-TTSSEEEEEETTT-EEEEEETTT-
T ss_pred             CCCEEEEEecc-------CCCcceEEEEccc-----CEEEECccCCCCCccceEEecCCCeEEEEECCC-eEEEEECCcC
Confidence            45566665431       2344778888877     4555565544 2344677789888887664443 6777887765


Q ss_pred             cceeecceeccceeeecccccCcEEEEEE--CCCCCEEEEee----------------------CCCeEEEEeCCCcceE
Q 015490          147 TEIRRLGVKISEKVLSQLENVGQQLALTF--DSEGTIFAAGS----------------------ENGNLRVFKWPSLEII  202 (406)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~g~~l~~~~----------------------~dg~i~vwd~~~~~~~  202 (406)
                      ++...+.++           ...+-...|  +.|+..++-.-                      -...|.-.|+.+|+..
T Consensus       113 e~~~vy~~p-----------~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~  181 (386)
T PF14583_consen  113 EERVVYEVP-----------DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERK  181 (386)
T ss_dssp             -EEEEEE-------------TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EE
T ss_pred             cEEEEEECC-----------cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCcee
Confidence            543333221           122222333  33455443221                      1234666677777654


Q ss_pred             eeeeccCCceeEEEEccCCC-EEEEEeC---CC-CEEEEEcCC-Ceeeeec-ccCCcceEEEEEEEcCCCCceEEEEEEE
Q 015490          203 LNESEAHASVKDLSFSPDGK-FLVSLGN---RG-PGRVWDLAS-SAVATPL-AKENDELFASCRFSPLNNEDYVLYIAAI  275 (406)
Q Consensus       203 ~~~~~~~~~i~~~~~s~~~~-~l~s~s~---d~-~i~iwd~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~  275 (406)
                      . +......+..+.|+|... .|+.|-+   +. .-+||-+++ +.....+ .......+..=-|.|+|..  +.|..-.
T Consensus       182 ~-v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~--i~y~~~~  258 (386)
T PF14583_consen  182 V-VFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGST--IWYDSYT  258 (386)
T ss_dssp             E-EEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS---EEEEEEE
T ss_pred             E-EEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCE--EEEEeec
Confidence            3 334455788999999554 5555532   22 135665543 2222222 2233455666789999986  4444332


Q ss_pred             -cCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCC----------------cEEEEECCCceEEEEe
Q 015490          276 -TDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASG----------------DISIIDSSSLQVRTAV  338 (406)
Q Consensus       276 -~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg----------------~i~i~d~~~~~~~~~~  338 (406)
                       ++.+..|.-+|+.+++.......  .....+-.++||++++-=+.|.                .|+++++..+......
T Consensus       259 ~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~  336 (386)
T PF14583_consen  259 PGGQDFWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLA  336 (386)
T ss_dssp             TTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEE
T ss_pred             CCCCceEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeee
Confidence             34466888899998765433332  2345666688998876533331                4667888776654322


Q ss_pred             e--------ccccc-ceEEEEEcCCCCeEE-EEECCCcEEEEEecCC
Q 015490          339 K--------KAHLG-IVTALAFSYDSRALV-SASMDSSVRVTVIEDK  375 (406)
Q Consensus       339 ~--------~~~~~-~v~~~~~sp~~~~l~-s~s~dg~i~iw~~~~~  375 (406)
                      .        .++.. .=....|+|||++++ ++...|...||-++-+
T Consensus       337 ~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~i~  383 (386)
T PF14583_consen  337 RHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVEIP  383 (386)
T ss_dssp             E-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE--
T ss_pred             eccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEeCc
Confidence            1        01111 113679999999876 5556788777766543

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.18  E-value=0.0024  Score=59.14  Aligned_cols=174  Identities=16%  Similarity=0.202  Sum_probs=89.3

Q ss_pred             CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeec--cCCce-----eEEEEccCCCEEEEEeCCCCEEEEEcCC
Q 015490          168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESE--AHASV-----KDLSFSPDGKFLVSLGNRGPGRVWDLAS  240 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~i-----~~~~~s~~~~~l~s~s~d~~i~iwd~~~  240 (406)
                      +.+.++.|+.+.+++ +-..||.+++||+... ....+..  ....|     ....+..+|  ++....++.+.+.+--.
T Consensus        81 ~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~G~-~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~  156 (410)
T PF04841_consen   81 GRIVGMGWTDDEELV-VVQSDGTVRVYDLFGE-FQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNID  156 (410)
T ss_pred             CCEEEEEECCCCeEE-EEEcCCEEEEEeCCCc-eeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCcc
Confidence            789999999875555 5578999999998633 3111110  01122     222333345  33334444444433212


Q ss_pred             Ce-eeeecc---cCCc-----ceEEE-EEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcC
Q 015490          241 SA-VATPLA---KEND-----ELFAS-CRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSA  310 (406)
Q Consensus       241 ~~-~~~~~~---~~~~-----~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp  310 (406)
                      .. ....+.   ....     ..... ..++.+..    ..+.+  ..++.+.+.+....+.   +. ..+++..|+.||
T Consensus       157 ~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~----~~i~~--~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSp  226 (410)
T PF04841_consen  157 EPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRV----VEILL--ANGETIYIIDENSFKQ---ID-SDGPIIKIAVSP  226 (410)
T ss_pred             ccchhhccccCCCcccccccccccccceEeecCcc----eEEEE--ecCCEEEEEEcccccc---cc-CCCCeEEEEECC
Confidence            11 111111   1000     00000 11222222    11111  1234555444332211   11 236799999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCC
Q 015490          311 DGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDS  355 (406)
Q Consensus       311 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~  355 (406)
                      +|++||.-..+|.+.+.+.+-.+....+...-......+.|.-+.
T Consensus       227 ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  227 NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND  271 (410)
T ss_pred             CCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence            999999999999999998766666666543333455667776543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.17  E-value=0.00057  Score=66.95  Aligned_cols=133  Identities=12%  Similarity=0.110  Sum_probs=84.2

Q ss_pred             CCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCC-------CCEEEEeeCCCeEEEEeCCCcc--eEee
Q 015490          134 NSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSE-------GTIFAAGSENGNLRVFKWPSLE--IILN  204 (406)
Q Consensus       134 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-------g~~l~~~~~dg~i~vwd~~~~~--~~~~  204 (406)
                      ..-.||.+|...++.+.....            +..+.-..+.|+       ...-+.|-.+..+..||.+-..  .+..
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~------------~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~  569 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKV------------HDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS  569 (794)
T ss_pred             CCCceEEEecCCCcEEEEeec------------CCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeec
Confidence            334788888876665554443            322222333332       2345567778889999987532  2211


Q ss_pred             e---eccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcE
Q 015490          205 E---SEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGAS  281 (406)
Q Consensus       205 ~---~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  281 (406)
                      .   .......+|++-+.+| +||+|+.+|.||+||- .|+..++....-+.+|..+..+.+|+.     +++++  +..
T Consensus       570 ~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkw-----ilaTc--~ty  640 (794)
T PF08553_consen  570 QSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKW-----ILATC--KTY  640 (794)
T ss_pred             cccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcE-----EEEee--cce
Confidence            1   1122267788877777 6999999999999994 444444444455678999999999995     55544  556


Q ss_pred             EEEEeC
Q 015490          282 IVTWNT  287 (406)
Q Consensus       282 i~~~d~  287 (406)
                      |.+++.
T Consensus       641 LlLi~t  646 (794)
T PF08553_consen  641 LLLIDT  646 (794)
T ss_pred             EEEEEE
Confidence            777764

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=2.5e-05  Score=68.06  Aligned_cols=94  Identities=13%  Similarity=0.140  Sum_probs=74.6

Q ss_pred             EEEEeCCCcceEeeeeccCCceeEEEEccCCC-EEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceE
Q 015490          191 LRVFKWPSLEIILNESEAHASVKDLSFSPDGK-FLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYV  269 (406)
Q Consensus       191 i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (406)
                      +++.+-.+.+....+..+...|.+++|||..+ ++..++.+..|+|.|+++...+..+..+  ..+++++|.-+..+   
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~--~~~wSC~wDlde~h---  249 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY--NQIWSCCWDLDERH---  249 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc--CCceeeeeccCCcc---
Confidence            55555555555554555556899999999877 7888999999999999998888877655  56889999999886   


Q ss_pred             EEEEEEcCCCcEEEEEeCCCce
Q 015490          270 LYIAAITDRGASIVTWNTTTWK  291 (406)
Q Consensus       270 l~~~~~~~~~~~i~~~d~~~~~  291 (406)
                        .+..|..+|.|.+||++..+
T Consensus       250 --~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  250 --VIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             --eeEEeccCceEEEEEccCCC
Confidence              55667889999999998644

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.14  E-value=6.5e-07  Score=82.11  Aligned_cols=201  Identities=15%  Similarity=0.124  Sum_probs=125.7

Q ss_pred             ccCcEEEEEECCC--CCEEEEeeCCCeEEEEeCCCcce--EeeeeccCCceeEEEEcc-CCCEEEEEe----CCCCEEEE
Q 015490          166 NVGQQLALTFDSE--GTIFAAGSENGNLRVFKWPSLEI--ILNESEAHASVKDLSFSP-DGKFLVSLG----NRGPGRVW  236 (406)
Q Consensus       166 ~~~~v~~~~~s~~--g~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~-~~~~l~s~s----~d~~i~iw  236 (406)
                      ....+.|+++.-+  ...+++|..+|.|.+-.++...-  .....++....++++|++ |.+.||.|-    .|..+.||
T Consensus        55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw  134 (783)
T KOG1008|consen   55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW  134 (783)
T ss_pred             cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence            3456778887654  35888999999999988754322  223344555889999988 445666653    36679999


Q ss_pred             EcCCC--eeee--ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcC-C
Q 015490          237 DLASS--AVAT--PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSA-D  311 (406)
Q Consensus       237 d~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp-~  311 (406)
                      |+.++  .+..  .+.........+++|..+.+      ++.+|.....+.++|++.... .........+..+..+| .
T Consensus       135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~k------lvlaGm~sr~~~ifdlRqs~~-~~~svnTk~vqG~tVdp~~  207 (783)
T KOG1008|consen  135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK------LVLAGMTSRSVHIFDLRQSLD-SVSSVNTKYVQGITVDPFS  207 (783)
T ss_pred             ecccccCCCccccccccccccCccccccccCcc------hhhcccccchhhhhhhhhhhh-hhhhhhhhhcccceecCCC
Confidence            99876  2211  22221222344778886655      455666778899999984221 11112234566788888 7


Q ss_pred             CCEEEEEeCCCcEEEEE-CCCce-EEEEeec---ccccceEEEEEcCCC-CeEEEEEC-CCcEEEEEecC
Q 015490          312 GKLLAVGTASGDISIID-SSSLQ-VRTAVKK---AHLGIVTALAFSYDS-RALVSASM-DSSVRVTVIED  374 (406)
Q Consensus       312 ~~~l~~~~~dg~i~i~d-~~~~~-~~~~~~~---~~~~~v~~~~~sp~~-~~l~s~s~-dg~i~iw~~~~  374 (406)
                      ++|++.-. ||.|.+|| ..+-+ ++..+..   .....+..++|+|.. ..+++.+. .++|+.+++..
T Consensus       208 ~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  208 PNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             CCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            77887655 99999999 33322 2222220   111248899999953 23555554 47899999854

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.09  E-value=0.0026  Score=58.27  Aligned_cols=213  Identities=18%  Similarity=0.182  Sum_probs=118.1

Q ss_pred             cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceE-------------------------------------------eee
Q 015490          169 QQLALTFDSEGTIFAAGSENGNLRVFKWPSLEII-------------------------------------------LNE  205 (406)
Q Consensus       169 ~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~-------------------------------------------~~~  205 (406)
                      .|+.+.|+++...|++|...|.|.||.+...+..                                           .-+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            4788999999889999999999999976321100                                           011


Q ss_pred             eccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeec-------ccCCcceEEEEEEEcC--CCCceEEEEEEEc
Q 015490          206 SEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPL-------AKENDELFASCRFSPL--NNEDYVLYIAAIT  276 (406)
Q Consensus       206 ~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-------~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~  276 (406)
                      ....++|++++.|. =-+++.|..+|.+.|.|++....+..-       .......++++.|...  +...+.-.++..+
T Consensus        83 ~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            12235788888874 448999999999999999988766542       2223445777877631  1111223344445


Q ss_pred             CCCcEEEEEeCC--C-ceE----EEEeeecCCCeEEEE-EcCC-C-------------------CEEEEEeCCCcEEEEE
Q 015490          277 DRGASIVTWNTT--T-WKR----IRTKQVVREPVSSFN-VSAD-G-------------------KLLAVGTASGDISIID  328 (406)
Q Consensus       277 ~~~~~i~~~d~~--~-~~~----~~~~~~~~~~i~~~~-~sp~-~-------------------~~l~~~~~dg~i~i~d  328 (406)
                      ...|.+.+|.+.  . +..    ......+.+.+..+. ++.+ |                   .-+++...+..++++.
T Consensus       162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~  241 (395)
T PF08596_consen  162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK  241 (395)
T ss_dssp             ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred             eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence            566899888763  1 211    111123445555554 3221 1                   1234444577899999


Q ss_pred             CCCceEEEEeecccccceEEEEEc-----CCCCeEEEEECCCcEEEEEecCCcCCCCchH
Q 015490          329 SSSLQVRTAVKKAHLGIVTALAFS-----YDSRALVSASMDSSVRVTVIEDKKKSGGLNL  383 (406)
Q Consensus       329 ~~~~~~~~~~~~~~~~~v~~~~~s-----p~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~  383 (406)
                      ..+.+...+.. ........+.+-     ..+..|++-..+|.|+++.+..-+++...++
T Consensus       242 ~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l  300 (395)
T PF08596_consen  242 PPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSL  300 (395)
T ss_dssp             TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-
T ss_pred             CCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccC
Confidence            98877766554 222233344452     3567788889999999999999888776655

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.05  E-value=0.0017  Score=61.04  Aligned_cols=275  Identities=12%  Similarity=0.165  Sum_probs=138.2

Q ss_pred             CCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEeccc
Q 015490           67 RRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVE  145 (406)
Q Consensus        67 ~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~  145 (406)
                      ....++.++...|          .++.++...+..   ......+..+.+..+..|++..++++|+ ++.+.++.++.. 
T Consensus        43 st~~~l~~GsS~G----------~lyl~~R~~~~~---~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~-  108 (726)
T KOG3621|consen   43 ATEEYLAMGSSAG----------SVYLYNRHTGEM---RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKE-  108 (726)
T ss_pred             cCCceEEEecccc----------eEEEEecCchhh---hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhcc-
Confidence            3555666654333          566666655432   2233334566677778888887777776 566666555431 


Q ss_pred             ccceeecceeccceeeecc--cccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc----eEeeeeccCCceeEEEEcc
Q 015490          146 NTEIRRLGVKISEKVLSQL--ENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLE----IILNESEAHASVKDLSFSP  219 (406)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~i~~~~~s~  219 (406)
                       ...       ....+...  .|...|+|++|++++..+++|...|+|..-.++...    ....+....+.|-.+... 
T Consensus       109 -~p~-------~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-  179 (726)
T KOG3621|consen  109 -LPR-------DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-  179 (726)
T ss_pred             -CCC-------cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-
Confidence             111       11111111  245789999999999999999999999998887621    122233334466666654 


Q ss_pred             CCCEEEEEeCCCCEEEEEcCCCeeeeeccc-CCcc-eEEEEEEEcCC--CCceEEEEEEEcCCCcEEEEEeCCC-ceEEE
Q 015490          220 DGKFLVSLGNRGPGRVWDLASSAVATPLAK-ENDE-LFASCRFSPLN--NEDYVLYIAAITDRGASIVTWNTTT-WKRIR  294 (406)
Q Consensus       220 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-~~~~-~~~~~~~~~~~--~~~~~l~~~~~~~~~~~i~~~d~~~-~~~~~  294 (406)
                      ++..|++...  ...+++.+.+.. ..+.. ..+. .-...+|-|..  .....+  .+.   .-..++|..+- |..++
T Consensus       180 q~~LLVStl~--r~~Lc~tE~eti-~QIG~k~R~~~~~~GACF~~g~~~~q~~~I--yca---RPG~RlWead~~G~V~~  251 (726)
T KOG3621|consen  180 QSYLLVSTLT--RCILCQTEAETI-TQIGKKPRKSLIDFGACFFPGQCKAQKPQI--YCA---RPGLRLWEADFAGEVIK  251 (726)
T ss_pred             cceehHhhhh--hhheeecchhHH-HHhcCCCcCCccccceEEeeccccCCCceE--EEe---cCCCceEEeecceeEEE
Confidence            2333333332  234555544331 11111 1111 01233444431  111122  221   22345665542 23333


Q ss_pred             EeeecC------CC---e---------------EEEEEcC----CCCEEEEEeCCCcEEEEECCCceEEEEeecccccce
Q 015490          295 TKQVVR------EP---V---------------SSFNVSA----DGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIV  346 (406)
Q Consensus       295 ~~~~~~------~~---i---------------~~~~~sp----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v  346 (406)
                      +....+      .+   +               ..+.|..    .+.++++-++-| |+|+|.++.+.+.-..  ....|
T Consensus       252 Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~~v~l~se--~~~DI  328 (726)
T KOG3621|consen  252 THQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNSQVYLWSE--GGHDI  328 (726)
T ss_pred             eeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccceEEEeec--CCCce
Confidence            322110      00   0               0111110    112333334344 8888887766554432  23345


Q ss_pred             EEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490          347 TALAFSYDSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       347 ~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      ..++.  +|+-|+.-..|+.+++..+.+..+
T Consensus       329 ~dVs~--~~neiFvL~~d~~l~~~sv~s~qr  357 (726)
T KOG3621|consen  329 LDVSH--CGNEIFVLNLDRGLKVESVASRQR  357 (726)
T ss_pred             eEEee--cCceEEEEecCCceeEEEeehhHH
Confidence            55554  355566667788888888876544

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=2.8e-05  Score=71.65  Aligned_cols=95  Identities=15%  Similarity=0.194  Sum_probs=79.8

Q ss_pred             cCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCcee-EEEEccCCCEEEEEeCCCCEEEEEcCCCeeee
Q 015490          167 VGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVK-DLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT  245 (406)
Q Consensus       167 ~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~  245 (406)
                      ...+.-+.|+|.-.++|.+..+|.|.+..+. .+.+..+.-+...++ +++|.|||+.|++|-.||+|++.|+.++..+.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            3567889999999999999999999999987 777777775666666 99999999999999999999999999998887


Q ss_pred             ecccCCcceEEEEEEEc
Q 015490          246 PLAKENDELFASCRFSP  262 (406)
Q Consensus       246 ~~~~~~~~~~~~~~~~~  262 (406)
                      .........+.++-|.+
T Consensus        99 ~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWDR  115 (665)
T ss_pred             ccccccccchheeeccc
Confidence            75444455677777764

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.01  E-value=0.011  Score=56.49  Aligned_cols=194  Identities=16%  Similarity=0.203  Sum_probs=114.7

Q ss_pred             CeEEEEEecccccceeecceeccce-eeecc--------cccCcE-EEEEECCCCCEEEEeeCCC---------------
Q 015490          135 SCRLFEWDEVENTEIRRLGVKISEK-VLSQL--------ENVGQQ-LALTFDSEGTIFAAGSENG---------------  189 (406)
Q Consensus       135 ~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~--------~~~~~v-~~~~~s~~g~~l~~~~~dg---------------  189 (406)
                      ...++-+|..+++...+........ .....        .....+ ...++.+.+..++.++.++               
T Consensus       174 ~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~  253 (488)
T cd00216         174 RGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNL  253 (488)
T ss_pred             CcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCC
Confidence            3577888888888777655421111 00000        000111 1345555566777776554               


Q ss_pred             ---eEEEEeCCCcceEeeeeccCCcee------EEEEc----cCCC---EEEEEeCCCCEEEEEcCCCeeeeecccCCcc
Q 015490          190 ---NLRVFKWPSLEIILNESEAHASVK------DLSFS----PDGK---FLVSLGNRGPGRVWDLASSAVATPLAKENDE  253 (406)
Q Consensus       190 ---~i~vwd~~~~~~~~~~~~~~~~i~------~~~~s----~~~~---~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~  253 (406)
                         .|.-+|..+|+..-..........      ...+.    -++.   .++.++.+|.+...|.++|+.+-......  
T Consensus       254 ~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~--  331 (488)
T cd00216         254 YTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE--  331 (488)
T ss_pred             ceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec--
Confidence               799999999998876543221111      01111    1333   57778889999999999998876543210  


Q ss_pred             eEEEEEEEcCCCCceEEEEEE---------------EcCCCcEEEEEeCCCceEEEEeeecC--------CCe--EEEEE
Q 015490          254 LFASCRFSPLNNEDYVLYIAA---------------ITDRGASIVTWNTTTWKRIRTKQVVR--------EPV--SSFNV  308 (406)
Q Consensus       254 ~~~~~~~~~~~~~~~~l~~~~---------------~~~~~~~i~~~d~~~~~~~~~~~~~~--------~~i--~~~~~  308 (406)
                        ..++.+|  .   .+|+..               ....++.+.-+|+.+++.+-+.....        .+.  ..+..
T Consensus       332 --~~~~~~~--~---~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~  404 (488)
T cd00216         332 --QPMAYDP--G---LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT  404 (488)
T ss_pred             --cccccCC--c---eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe
Confidence              1122233  1   122211               12346889999999998877665431        111  11222


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCceEEEEee
Q 015490          309 SADGKLLAVGTASGDISIIDSSSLQVRTAVK  339 (406)
Q Consensus       309 sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  339 (406)
                        .+..|++++.||.|+.+|.++++.+-+..
T Consensus       405 --~g~~v~~g~~dG~l~ald~~tG~~lW~~~  433 (488)
T cd00216         405 --AGNLVFAGAADGYFRAFDATTGKELWKFR  433 (488)
T ss_pred             --cCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence              46788899999999999999999988875

The alignment model contains an 8-bladed beta-propeller.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.99  E-value=0.017  Score=55.50  Aligned_cols=241  Identities=9%  Similarity=0.035  Sum_probs=130.4

Q ss_pred             eEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEE-EEECCCCCEEEEee------CCCeEEEEeCCCc
Q 015490          127 GIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLA-LTFDSEGTIFAAGS------ENGNLRVFKWPSL  199 (406)
Q Consensus       127 ~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~g~~l~~~~------~dg~i~vwd~~~~  199 (406)
                      .++++. ...+|+-+|..+++..........       .....+.+ .... ++ .++++.      .+|.|..+|.++|
T Consensus       122 ~v~v~t-~dg~l~ALDa~TGk~~W~~~~~~~-------~~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG  191 (527)
T TIGR03075       122 KVFFGT-LDARLVALDAKTGKVVWSKKNGDY-------KAGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTG  191 (527)
T ss_pred             EEEEEc-CCCEEEEEECCCCCEEeecccccc-------cccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCC
Confidence            444443 233677788888877766443100       00001110 0011 33 344443      2688999999998


Q ss_pred             ceEeeeeccCC-------------------------------ce-eEEEEccCCCEEEEEeCC-----C-----------
Q 015490          200 EIILNESEAHA-------------------------------SV-KDLSFSPDGKFLVSLGNR-----G-----------  231 (406)
Q Consensus       200 ~~~~~~~~~~~-------------------------------~i-~~~~~s~~~~~l~s~s~d-----~-----------  231 (406)
                      +.+-.+.....                               .+ ..+++.|+..+++.+..+     +           
T Consensus       192 ~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~  271 (527)
T TIGR03075       192 KLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTS  271 (527)
T ss_pred             ceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccce
Confidence            87655322111                               11 124556655666655421     1           


Q ss_pred             CEEEEEcCCCeeeeecccCCcc--------eEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeee-----
Q 015490          232 PGRVWDLASSAVATPLAKENDE--------LFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQV-----  298 (406)
Q Consensus       232 ~i~iwd~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~-----  298 (406)
                      +|.-.|+++|+..-.++..+..        ...-+....+++.   .=+++.+..+|.+++.|.++++.+.....     
T Consensus       272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~---~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~  348 (527)
T TIGR03075       272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKP---RKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVN  348 (527)
T ss_pred             eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcE---EEEEEEeCCCceEEEEECCCCceeccccccCCcc
Confidence            5667788888877655432211        1111222235542   12556678999999999999987521100     


Q ss_pred             -------cC-C----------------------------CeEEEEEcCCCCEEEEEeCC---------------------
Q 015490          299 -------VR-E----------------------------PVSSFNVSADGKLLAVGTAS---------------------  321 (406)
Q Consensus       299 -------~~-~----------------------------~i~~~~~sp~~~~l~~~~~d---------------------  321 (406)
                             .. .                            .-..++++|+..++++...+                     
T Consensus       349 w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~  428 (527)
T TIGR03075       349 WATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGA  428 (527)
T ss_pred             cccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceecc
Confidence                   00 0                            01125667766655543332                     


Q ss_pred             ------------CcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCch
Q 015490          322 ------------GDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLN  382 (406)
Q Consensus       322 ------------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~  382 (406)
                                  |.|.-+|+.+++..-...... ....+. ..-.+.+++.++.||.++.+|.++++.+-++.
T Consensus       429 ~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~-p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~  499 (527)
T TIGR03075       429 GLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDF-PLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFK  499 (527)
T ss_pred             ccccCCCCCCCceeEEEEeCCCCceeeEecCCC-CCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEe
Confidence                        457777888887776654211 111121 11245567778889999999999999865543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.99  E-value=0.00067  Score=62.89  Aligned_cols=141  Identities=16%  Similarity=0.171  Sum_probs=79.6

Q ss_pred             ceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc
Q 015490          211 SVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW  290 (406)
Q Consensus       211 ~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~  290 (406)
                      ....+.++|+|++++++ .||.-.|+.....+....      ..-....|.+.++.       +.-.....|.++.--..
T Consensus        34 ~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~------G~g~~~vw~~~n~y-------Av~~~~~~I~I~kn~~~   99 (443)
T PF04053_consen   34 YPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF------GSGLSFVWSSRNRY-------AVLESSSTIKIYKNFKN   99 (443)
T ss_dssp             --SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE------EE-SEEEE-TSSEE-------EEE-TTS-EEEEETTEE
T ss_pred             CCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc------CceeEEEEecCccE-------EEEECCCeEEEEEcCcc
Confidence            57899999999988884 477888887443333221      11235778885542       33344778888633222


Q ss_pred             eEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEE
Q 015490          291 KRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVT  370 (406)
Q Consensus       291 ~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw  370 (406)
                      +....+... ..+..+-.   |.+|...+.+ .|.+||..+++.++.+.  .. +|..+.|+++|.+++-.+.+ .+.|+
T Consensus       100 ~~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~--v~-~vk~V~Ws~~g~~val~t~~-~i~il  170 (443)
T PF04053_consen  100 EVVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRID--VS-AVKYVIWSDDGELVALVTKD-SIYIL  170 (443)
T ss_dssp             -TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEES--S--E-EEEEE-TTSSEEEEE-S--SEEEE
T ss_pred             ccceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEe--cC-CCcEEEEECCCCEEEEEeCC-eEEEE
Confidence            222233322 23444433   8777776644 89999999999999985  33 48999999999999888755 67887


Q ss_pred             EecC
Q 015490          371 VIED  374 (406)
Q Consensus       371 ~~~~  374 (406)
                      +...
T Consensus       171 ~~~~  174 (443)
T PF04053_consen  171 KYNL  174 (443)
T ss_dssp             EE-H
T ss_pred             Eecc
Confidence            7643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.95  E-value=0.0049  Score=55.10  Aligned_cols=201  Identities=15%  Similarity=0.070  Sum_probs=98.1

Q ss_pred             EECCCCCEEEEeeC-C--CeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccC
Q 015490          174 TFDSEGTIFAAGSE-N--GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKE  250 (406)
Q Consensus       174 ~~s~~g~~l~~~~~-d--g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  250 (406)
                      +|.+||+.|+.++. |  ..+.+.|+.+++..+-..+.........++|+++.++.......++-.|+++.+....+..+
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p  121 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP  121 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence            67889966665544 4  46777888888776544433333446778899998887776778999999988765444433


Q ss_pred             CcceEEEEEEEcCCCCceEEEEEEEc------------------CCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCC-
Q 015490          251 NDELFASCRFSPLNNEDYVLYIAAIT------------------DRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSAD-  311 (406)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~l~~~~~~------------------~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~-  311 (406)
                       ........|..+.....++.+....                  .....|.-.|+.+++....+. ....+..+.|||. 
T Consensus       122 -~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~d  199 (386)
T PF14583_consen  122 -DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTD  199 (386)
T ss_dssp             -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTE
T ss_pred             -cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCC
Confidence             3334445665433221122221111                  113457778888877655554 4467889999994 


Q ss_pred             CCEEEEEeC------CCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEE-----CCCcEEEEEecCCc
Q 015490          312 GKLLAVGTA------SGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSAS-----MDSSVRVTVIEDKK  376 (406)
Q Consensus       312 ~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s-----~dg~i~iw~~~~~~  376 (406)
                      ...|+.|-+      |..|.+.+.................+..=-|.|||..|.--+     .+..|.-+++.+++
T Consensus       200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~  275 (386)
T PF14583_consen  200 PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGE  275 (386)
T ss_dssp             EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred             CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCC
Confidence            455555543      234555554433322222212233455667899988765432     23345556666654

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.95  E-value=0.0023  Score=62.85  Aligned_cols=136  Identities=12%  Similarity=0.074  Sum_probs=91.8

Q ss_pred             eCCCeEEEEeCCCcceEeeeeccCC-ceeEEEEcc-----CCCEEEEEeCCCCEEEEEcCCCe--eeee-c-ccCCcceE
Q 015490          186 SENGNLRVFKWPSLEIILNESEAHA-SVKDLSFSP-----DGKFLVSLGNRGPGRVWDLASSA--VATP-L-AKENDELF  255 (406)
Q Consensus       186 ~~dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~-----~~~~l~s~s~d~~i~iwd~~~~~--~~~~-~-~~~~~~~~  255 (406)
                      .....|+-.|++.|+.+..+..+.. +|..++=..     +....+.|-.++.+..||.+-..  .+.. . ........
T Consensus       501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F  580 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF  580 (794)
T ss_pred             CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence            3457899999999999998887765 355544321     12345567778899999998543  2211 1 11223346


Q ss_pred             EEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 015490          256 ASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDS  329 (406)
Q Consensus       256 ~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~  329 (406)
                      .|++-+.+|.       ++.|+.+|.|++||--..+....+.+-+.+|..+..+.||+||++.+. ..+.+++.
T Consensus       581 s~~aTt~~G~-------iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  581 SCFATTEDGY-------IAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT  646 (794)
T ss_pred             eEEEecCCce-------EEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence            6777777764       577789999999995433333344455789999999999999987764 45666664

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.95  E-value=0.00017  Score=67.55  Aligned_cols=195  Identities=12%  Similarity=0.067  Sum_probs=119.0

Q ss_pred             cCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeee-ccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeee-
Q 015490          167 VGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNES-EAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVA-  244 (406)
Q Consensus       167 ~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~-  244 (406)
                      +..+.--+++..+++++.|+.-|.+++|+-..++....-. +.++.+.....|++..++|.|+..|.|.++-+..+.+. 
T Consensus        33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~  112 (726)
T KOG3621|consen   33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD  112 (726)
T ss_pred             cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence            3455556677788999999999999999966555432222 24446677788998889999999999999988764322 


Q ss_pred             ----eecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCce----EEEEeeecCCCeEEEEEcCCCCEEE
Q 015490          245 ----TPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK----RIRTKQVVREPVSSFNVSADGKLLA  316 (406)
Q Consensus       245 ----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~i~~~~~sp~~~~l~  316 (406)
                          ......+...|++++|++++.+      +.+|+..|.|.+-.+.+..    ....+....+.|..+... ++ +|+
T Consensus       113 ~~~~t~~d~~~~~rVTal~Ws~~~~k------~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~-~LL  184 (726)
T KOG3621|consen  113 LDYVTPCDKSHKCRVTALEWSKNGMK------LYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QS-YLL  184 (726)
T ss_pred             ceeeccccccCCceEEEEEecccccE------EeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cc-eeh
Confidence                1222234678999999999985      5678889999988877621    122222334667777665 23 333


Q ss_pred             EEeCCCcEEEEECCCce--EEEEeecccccc-eEEEEEcCC----CCeEEEEECCCcEEEEEec
Q 015490          317 VGTASGDISIIDSSSLQ--VRTAVKKAHLGI-VTALAFSYD----SRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       317 ~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~-v~~~~~sp~----~~~l~s~s~dg~i~iw~~~  373 (406)
                      +++.-. -.+++++...  .+..-  .-.+. -...+|-|.    .+-.+.++.-| .|+|..+
T Consensus       185 VStl~r-~~Lc~tE~eti~QIG~k--~R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead  244 (726)
T KOG3621|consen  185 VSTLTR-CILCQTEAETITQIGKK--PRKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEAD  244 (726)
T ss_pred             Hhhhhh-hheeecchhHHHHhcCC--CcCCccccceEEeeccccCCCceEEEecCC-CceEEee
Confidence            333222 2344544322  11111  11121 224445443    33344555554 6888775

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.89  E-value=0.00093  Score=64.44  Aligned_cols=151  Identities=12%  Similarity=0.100  Sum_probs=89.8

Q ss_pred             ceeEEEEccCCCEEEEEe------CCC--CEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEE---------
Q 015490          211 SVKDLSFSPDGKFLVSLG------NRG--PGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIA---------  273 (406)
Q Consensus       211 ~i~~~~~s~~~~~l~s~s------~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------  273 (406)
                      .+.+.+++|||+.++...      .|.  .|.+++.. +.. ..+...  .......|+|++..   ++.+         
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g--~~~t~PsWspDG~~---lw~v~dg~~~~~v  423 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEG--HSLTRPSWSLDADA---VWVVVDGNTVVRV  423 (591)
T ss_pred             CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecC--CCCCCceECCCCCc---eEEEecCcceEEE
Confidence            678899999999887765      243  45555542 222 333222  22667899999774   1111         


Q ss_pred             EEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEE---EECCCceE-E---EEeecccccce
Q 015490          274 AITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISI---IDSSSLQV-R---TAVKKAHLGIV  346 (406)
Q Consensus       274 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i---~d~~~~~~-~---~~~~~~~~~~v  346 (406)
                      ......+.+++.+++.+....   ...+.|..+.|||||..++... ++.|++   -....+.. +   ..+.......+
T Consensus       424 ~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~  499 (591)
T PRK13616        424 IRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTA  499 (591)
T ss_pred             eccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCcc
Confidence            111233455555665544322   2245799999999999998876 577777   45444541 1   11221233346


Q ss_pred             EEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490          347 TALAFSYDSRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       347 ~~~~~sp~~~~l~s~s~dg~i~iw~~~  373 (406)
                      .++.|..++.++ .+..++...+|.+.
T Consensus       500 ~~l~W~~~~~L~-V~~~~~~~~v~~v~  525 (591)
T PRK13616        500 VSLDWRTGDSLV-VGRSDPEHPVWYVN  525 (591)
T ss_pred             ccceEecCCEEE-EEecCCCCceEEEe
Confidence            889999998854 55555555566653

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.85  E-value=0.0047  Score=55.51  Aligned_cols=175  Identities=16%  Similarity=0.177  Sum_probs=104.7

Q ss_pred             CeEEEEeCCCcceEeeeeccCC-ceeEEE---EccC----CCEEEEEeC----------CCCEEEEEcCCC-----eeee
Q 015490          189 GNLRVFKWPSLEIILNESEAHA-SVKDLS---FSPD----GKFLVSLGN----------RGPGRVWDLASS-----AVAT  245 (406)
Q Consensus       189 g~i~vwd~~~~~~~~~~~~~~~-~i~~~~---~s~~----~~~l~s~s~----------d~~i~iwd~~~~-----~~~~  245 (406)
                      ..|++.|..+.+.+..+.-... .+.+++   +..+    ..+|++|+.          .|.|.++++...     +...
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            3688888888776655544333 444443   3332    457777753          288999999884     2222


Q ss_pred             ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCce-EEEEeee-cCCCeEEEEEcCCCCEEEEEeCCCc
Q 015490          246 PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK-RIRTKQV-VREPVSSFNVSADGKLLAVGTASGD  323 (406)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~-~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~dg~  323 (406)
                      ........++.+++--  +..    ++++.   +..|.+|++...+ ....-.. ....+.++...  ++++++|.....
T Consensus        82 i~~~~~~g~V~ai~~~--~~~----lv~~~---g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~s  150 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF--NGR----LVVAV---GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKS  150 (321)
T ss_dssp             EEEEEESS-EEEEEEE--TTE----EEEEE---TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSS
T ss_pred             EEEEeecCcceEhhhh--CCE----EEEee---cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccC
Confidence            2222234456666554  332    23332   5789999987766 4333222 22355566554  669999998888


Q ss_pred             EEEEECCC-ceEEEEee-cccccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490          324 ISIIDSSS-LQVRTAVK-KAHLGIVTALAFSYDSRALVSASMDSSVRVTVIED  374 (406)
Q Consensus       324 i~i~d~~~-~~~~~~~~-~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~  374 (406)
                      +.++..+. ...+..+. ......++++.|-+++..++.+..+|.+.++....
T Consensus       151 v~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  151 VSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             EEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred             EEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence            88775432 23222222 23455688999987767899999999999999874

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.84  E-value=9.4e-05  Score=68.35  Aligned_cols=93  Identities=20%  Similarity=0.250  Sum_probs=76.3

Q ss_pred             eEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeE-EEEEcCCCCEEEEEeCCCcEEEEECCCc
Q 015490          254 LFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVS-SFNVSADGKLLAVGTASGDISIIDSSSL  332 (406)
Q Consensus       254 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~-~~~~sp~~~~l~~~~~dg~i~i~d~~~~  332 (406)
                      .+..+.|+|.-.      ++|....+|.|.+..++ ++.+.++..+...++ +++|.|||+.||+|-.||+|++.|..++
T Consensus        22 ~i~~~ewnP~~d------LiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~   94 (665)
T KOG4640|consen   22 NIKRIEWNPKMD------LIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG   94 (665)
T ss_pred             ceEEEEEcCccc------hhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence            366789999877      56677788999999888 778888886776677 9999999999999999999999999998


Q ss_pred             eEEEEeecccccceEEEEEcC
Q 015490          333 QVRTAVKKAHLGIVTALAFSY  353 (406)
Q Consensus       333 ~~~~~~~~~~~~~v~~~~~sp  353 (406)
                      ..+......-...|.++.|++
T Consensus        95 ~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   95 GRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             Cceeccccccccchheeeccc
Confidence            887774334566788888863

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.82  E-value=0.0088  Score=55.45  Aligned_cols=173  Identities=15%  Similarity=0.175  Sum_probs=90.7

Q ss_pred             eEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeeccc--CCcceEEEE----EEEcC
Q 015490          190 NLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAK--ENDELFASC----RFSPL  263 (406)
Q Consensus       190 ~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~----~~~~~  263 (406)
                      .|+||+. .|+.+..+.-..+.|.++.|+.+. .|++...||.+++||+.... ...+..  .......+.    .+..+
T Consensus        62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~  138 (410)
T PF04841_consen   62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKN  138 (410)
T ss_pred             EEEEECC-CCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCC
Confidence            5999995 566666655444789999999865 56677789999999986333 211111  111111111    11112


Q ss_pred             CCCceEEEEEEEcCCCcEEEEEeCCCce-EEEEeeecCCCeEE----------EEEcCCCCEEEEEeCCCcEEEEECCCc
Q 015490          264 NNEDYVLYIAAITDRGASIVTWNTTTWK-RIRTKQVVREPVSS----------FNVSADGKLLAVGTASGDISIIDSSSL  332 (406)
Q Consensus       264 ~~~~~~l~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~i~~----------~~~sp~~~~l~~~~~dg~i~i~d~~~~  332 (406)
                      |     + ++.  ..++.+++.+-.... ..+.+..-......          ..++.+....+....++.+.+.+....
T Consensus       139 G-----i-vvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~  210 (410)
T PF04841_consen  139 G-----I-VVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF  210 (410)
T ss_pred             C-----E-EEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc
Confidence            2     1 122  224444444322211 11111100000000          223334444444444455554443322


Q ss_pred             eEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCC
Q 015490          333 QVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKS  378 (406)
Q Consensus       333 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~  378 (406)
                      +.   +  ...+++..|+.||+|+++|.-..+|.+.+....-.+..
T Consensus       211 ~~---i--~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~  251 (410)
T PF04841_consen  211 KQ---I--DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKL  251 (410)
T ss_pred             cc---c--cCCCCeEEEEECCCCCEEEEEECCCCEEEEECccccee
Confidence            11   2  13468999999999999999999999988876544433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.79  E-value=8.3e-06  Score=75.14  Aligned_cols=155  Identities=15%  Similarity=0.222  Sum_probs=97.9

Q ss_pred             cCcEEEEEECC-CCCEEEEee----CCCeEEEEeCCCcc----eEeeeec-cCCceeEEEEccCCCEEEEEeCCCCEEEE
Q 015490          167 VGQQLALTFDS-EGTIFAAGS----ENGNLRVFKWPSLE----IILNESE-AHASVKDLSFSPDGKFLVSLGNRGPGRVW  236 (406)
Q Consensus       167 ~~~v~~~~~s~-~g~~l~~~~----~dg~i~vwd~~~~~----~~~~~~~-~~~~i~~~~~s~~~~~l~s~s~d~~i~iw  236 (406)
                      ...+++++|++ |.+.||.|-    .|..+.|||+.++-    ....+.. ......+++|..+.+.+.+|.....++++
T Consensus       102 ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~if  181 (783)
T KOG1008|consen  102 ARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIF  181 (783)
T ss_pred             cccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhh
Confidence            36789999998 667888773    36689999997761    1112222 22256789999999999999999999999


Q ss_pred             EcCCCe-eeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEe-CCCceE-EEEeeecC----CCeEEEEEc
Q 015490          237 DLASSA-VATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWN-TTTWKR-IRTKQVVR----EPVSSFNVS  309 (406)
Q Consensus       237 d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d-~~~~~~-~~~~~~~~----~~i~~~~~s  309 (406)
                      |++... ....+.   ...+..+...|-...    |+ ++ ..++.|.+|| .+.-+. +..+....    ..+..++|+
T Consensus       182 dlRqs~~~~~svn---Tk~vqG~tVdp~~~n----Y~-cs-~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~ayc  252 (783)
T KOG1008|consen  182 DLRQSLDSVSSVN---TKYVQGITVDPFSPN----YF-CS-NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYC  252 (783)
T ss_pred             hhhhhhhhhhhhh---hhhcccceecCCCCC----ce-ec-cccCceeeccchhhhccHHHHHhhCCCCcccceeeEEec
Confidence            998432 222222   123445667773332    12 22 3499999999 443222 22222111    248899999


Q ss_pred             CCCC-EEEEEeC-CCcEEEEECC
Q 015490          310 ADGK-LLAVGTA-SGDISIIDSS  330 (406)
Q Consensus       310 p~~~-~l~~~~~-dg~i~i~d~~  330 (406)
                      |... .+++... .++|++||+.
T Consensus       253 Ptrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  253 PTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             cCCcchhhhhccCcceEEEeccc
Confidence            9533 4444444 5789999985

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.78  E-value=0.029  Score=51.38  Aligned_cols=81  Identities=17%  Similarity=0.144  Sum_probs=57.1

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccc-eEEEEEc-CC----------------CCe-EEEE
Q 015490          301 EPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGI-VTALAFS-YD----------------SRA-LVSA  361 (406)
Q Consensus       301 ~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-v~~~~~s-p~----------------~~~-l~s~  361 (406)
                      ..+.+++.+|++++.|+...-|.|.++|+.++..++.++ +..+. +.-+... ..                ..+ ++-+
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK-GYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya  386 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK-GYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA  386 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc-cCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence            457889999999999998778999999999988887775 43322 1111110 00                112 3345


Q ss_pred             ECCCcEEEEEecCCcCCCCch
Q 015490          362 SMDSSVRVTVIEDKKKSGGLN  382 (406)
Q Consensus       362 s~dg~i~iw~~~~~~~~~~~~  382 (406)
                      -.-|.|.||.++++.++..+.
T Consensus       387 prRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  387 PRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             ccCCeEEEEecCCCCEEEEEE
Confidence            678999999999999877654

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.77  E-value=0.0014  Score=59.79  Aligned_cols=145  Identities=10%  Similarity=0.039  Sum_probs=91.1

Q ss_pred             cCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCC-------EEEEeeCCCeEEEEe
Q 015490          123 PHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGT-------IFAAGSENGNLRVFK  195 (406)
Q Consensus       123 p~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-------~l~~~~~dg~i~vwd  195 (406)
                      .+...++..+...-.|+.+|...++.+..            ...+..|+-+.+.|+.+       .-+.|-.|..|.-||
T Consensus       343 ~dsnlil~~~~~~~~l~klDIE~GKIVeE------------Wk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriD  410 (644)
T KOG2395|consen  343 ADSNLILMDGGEQDKLYKLDIERGKIVEE------------WKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRID  410 (644)
T ss_pred             cccceEeeCCCCcCcceeeecccceeeeE------------eeccCCcceeeccCCcchhcccccccEEeecCCceEEec
Confidence            34455555544444788888775554443            33444466777777653       123566678899999


Q ss_pred             CCCcce-Eeee-eccC----CceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceE
Q 015490          196 WPSLEI-ILNE-SEAH----ASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYV  269 (406)
Q Consensus       196 ~~~~~~-~~~~-~~~~----~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (406)
                      .+-... .... ..+.    ....|++-..+| +|++||.+|.|++||- .+....+....-+..|..+..+.+|+.   
T Consensus       411 pRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKw---  485 (644)
T KOG2395|consen  411 PRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKW---  485 (644)
T ss_pred             ccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcE---
Confidence            863222 1112 2221    145666665555 7999999999999997 555555555556778999999999995   


Q ss_pred             EEEEEEcCCCcEEEEEeCC
Q 015490          270 LYIAAITDRGASIVTWNTT  288 (406)
Q Consensus       270 l~~~~~~~~~~~i~~~d~~  288 (406)
                        +++++  +..+.+.++.
T Consensus       486 --il~Tc--~tyLlLi~t~  500 (644)
T KOG2395|consen  486 --ILATC--KTYLLLIDTL  500 (644)
T ss_pred             --EEEec--ccEEEEEEEe
Confidence              45543  5566666653

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.77  E-value=0.015  Score=49.20  Aligned_cols=238  Identities=11%  Similarity=0.048  Sum_probs=124.5

Q ss_pred             CceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeC-----
Q 015490          115 LPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE-----  187 (406)
Q Consensus       115 ~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-----  187 (406)
                      .-..|+|+|....-++-.  -++ ..+.+|.....++..+..    ..-+.+-+     .-.|||||.+|+..-.     
T Consensus        69 R~Hgi~~~p~~~ravafARrPGt-f~~vfD~~~~~~pv~~~s----~~~RHfyG-----HGvfs~dG~~LYATEndfd~~  138 (366)
T COG3490          69 RGHGIAFHPALPRAVAFARRPGT-FAMVFDPNGAQEPVTLVS----QEGRHFYG-----HGVFSPDGRLLYATENDFDPN  138 (366)
T ss_pred             ccCCeecCCCCcceEEEEecCCc-eEEEECCCCCcCcEEEec----ccCceeec-----ccccCCCCcEEEeecCCCCCC
Confidence            345677888665444333  222 344455544433332211    01111122     2379999999987633     


Q ss_pred             CCeEEEEeCCCc-ceEeeeeccCCceeEEEEccCCCEEEEEeC------------------CCCEEEEEcCCCeeeeecc
Q 015490          188 NGNLRVFKWPSL-EIILNESEAHASVKDLSFSPDGKFLVSLGN------------------RGPGRVWDLASSAVATPLA  248 (406)
Q Consensus       188 dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~------------------d~~i~iwd~~~~~~~~~~~  248 (406)
                      .|.|-|||.+.+ +.+..+..+.-.-..+.|.+||+.++.+..                  .-++.+.|..+|+.+.+..
T Consensus       139 rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~  218 (366)
T COG3490         139 RGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHT  218 (366)
T ss_pred             CceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhcc
Confidence            378999998743 344455555557788999999999887643                  1234455555555544332


Q ss_pred             cC---CcceEEEEEEEcCCCCceEEEEEEEc---CCC-cEEEEEeCCCceEEEEeeec-------CCCeEEEEEcCCCCE
Q 015490          249 KE---NDELFASCRFSPLNNEDYVLYIAAIT---DRG-ASIVTWNTTTWKRIRTKQVV-------REPVSSFNVSADGKL  314 (406)
Q Consensus       249 ~~---~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~-~~i~~~d~~~~~~~~~~~~~-------~~~i~~~~~sp~~~~  314 (406)
                      ..   +.-.+..++..+++.-     +...-   ..+ .--.+=-...++.+.-+...       ...|-+++.+.+..+
T Consensus       219 Lp~~l~~lSiRHld~g~dgtv-----wfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~gl  293 (366)
T COG3490         219 LPASLRQLSIRHLDIGRDGTV-----WFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGL  293 (366)
T ss_pred             CchhhhhcceeeeeeCCCCcE-----EEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCe
Confidence            21   1223455555555541     11110   000 00000011112222222211       246778888876667


Q ss_pred             EEEEeCC-CcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEe
Q 015490          315 LAVGTAS-GDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVI  372 (406)
Q Consensus       315 l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~  372 (406)
                      ++..+-. +...+||..++..+....  - .....+.-  ...-++..+.+|.+.++.-
T Consensus       294 V~lTSP~GN~~vi~da~tG~vv~~a~--l-~daaGva~--~~~gf~vssg~G~~~~~s~  347 (366)
T COG3490         294 VALTSPRGNRAVIWDAATGAVVSEAA--L-PDAAGVAA--AKGGFAVSSGQGRIIFYSR  347 (366)
T ss_pred             EEEecCCCCeEEEEEcCCCcEEeccc--c-ccccccee--ccCceEEecCCceEEeccc
Confidence            7666654 457899999998876543  1 11222332  3334566677888888743

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.76  E-value=6.6e-05  Score=71.58  Aligned_cols=123  Identities=17%  Similarity=0.167  Sum_probs=87.2

Q ss_pred             EEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEE
Q 015490          257 SCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRT  336 (406)
Q Consensus       257 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~  336 (406)
                      -.+|+|..+-  ......+....|.|.+|- .+|++.+....+ -.++++||+|..-.|+.|-.-|.+.+|...+.+.-.
T Consensus        20 i~SWHPsePl--fAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P-~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht   95 (1416)
T KOG3617|consen   20 ISSWHPSEPL--FAVASFSPERGGSVTIFA-DTGEPQRDVTYP-VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT   95 (1416)
T ss_pred             ccccCCCCce--eEEEEecCCCCceEEEEe-cCCCCCcccccc-eehhhhccChHHHHHhhccccceeEEEecCCceeee
Confidence            4567777763  111122334567777773 334443332221 235789999999899999999999999987765544


Q ss_pred             EeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCchHH
Q 015490          337 AVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLNLW  384 (406)
Q Consensus       337 ~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~  384 (406)
                      .. ..|..+|..+.||++|..|+|+..-|.|.+|...-..++...+++
T Consensus        96 v~-~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~  142 (1416)
T KOG3617|consen   96 VV-ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIM  142 (1416)
T ss_pred             ec-cCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhh
Confidence            44 479999999999999999999999999999999865554444443

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.76  E-value=0.025  Score=49.89  Aligned_cols=146  Identities=16%  Similarity=0.127  Sum_probs=86.9

Q ss_pred             CcEEEEEECCCCCEEEEeeC---------CCeEEEEeCC-CcceEeeeeccCCceeEEEEccCCCEEEEEeC-CCCEEEE
Q 015490          168 GQQLALTFDSEGTIFAAGSE---------NGNLRVFKWP-SLEIILNESEAHASVKDLSFSPDGKFLVSLGN-RGPGRVW  236 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~~~---------dg~i~vwd~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~-d~~i~iw  236 (406)
                      ...+.+...|+|.+.++...         ...=.+|.+. .+.....+..+-..-+.++||||++.|+.+.. .+.|.-|
T Consensus       111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~  190 (307)
T COG3386         111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRY  190 (307)
T ss_pred             CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEE
Confidence            34567788889887665433         0111344444 45444444443445678999999987777654 4778888


Q ss_pred             EcCC--Cee----eeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEc-
Q 015490          237 DLAS--SAV----ATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVS-  309 (406)
Q Consensus       237 d~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~s-  309 (406)
                      ++..  +..    ..............++...++..     +++.....+.|..|+.. ++.+..+..+...+++++|- 
T Consensus       191 ~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~l-----w~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG  264 (307)
T COG3386         191 DLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNL-----WVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGG  264 (307)
T ss_pred             ecCcccCccCCcceEEEccCCCCCCCceEEeCCCCE-----EEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeC
Confidence            7752  111    11111112233446677777762     33333333589999999 88888888776667888875 


Q ss_pred             CCCCEEEEEe
Q 015490          310 ADGKLLAVGT  319 (406)
Q Consensus       310 p~~~~l~~~~  319 (406)
                      |+.+.|++.+
T Consensus       265 ~~~~~L~iTs  274 (307)
T COG3386         265 PDLNTLYITS  274 (307)
T ss_pred             CCcCEEEEEe
Confidence            3445554444

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.72  E-value=0.014  Score=48.67  Aligned_cols=145  Identities=10%  Similarity=0.041  Sum_probs=99.1

Q ss_pred             CCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEE
Q 015490          179 GTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASC  258 (406)
Q Consensus       179 g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  258 (406)
                      ..+++.|+..+.+.--|..+|+......-. ..|.+-+.- -|.+++.|...|.+++.+.++|.....+.....-.+ ..
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg-~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~-~a   99 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG-VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKV-RA   99 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhC-ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhcc-ce
Confidence            367888899999999999998876543222 223222222 366899999999999999999977666543322212 33


Q ss_pred             EEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCc
Q 015490          259 RFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSL  332 (406)
Q Consensus       259 ~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~  332 (406)
                      ...+++.      ++-.++.|+..+..|.++..++...+...+...+.+..|-...|+.+...|.+.-...+..
T Consensus       100 ~~d~~~g------lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~  167 (354)
T KOG4649|consen  100 QCDFDGG------LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY  167 (354)
T ss_pred             EEcCCCc------eEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence            4555665      3456688999999999999999988877766667777773344555556666655555443

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.70  E-value=0.045  Score=51.17  Aligned_cols=121  Identities=7%  Similarity=0.030  Sum_probs=71.5

Q ss_pred             CCCceEEEEccCC-----CeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCc--EEEEEECCCCCEEEEe
Q 015490          113 SDLPYRMAIHPHG-----DGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQ--QLALTFDSEGTIFAAG  185 (406)
Q Consensus       113 ~~~v~~~~~sp~~-----~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~s~~g~~l~~~  185 (406)
                      -+.|..+.|.|-+     .+||+-....+.+|.+-....+.-+.+..     ....+...-+  -..+.|+|....|++-
T Consensus        56 FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~s-----QtcEi~e~~pvLpQGCVWHPk~~iL~VL  130 (671)
T PF15390_consen   56 FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMS-----QTCEIREPFPVLPQGCVWHPKKAILTVL  130 (671)
T ss_pred             cceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceee-----eeeeccCCcccCCCcccccCCCceEEEE
Confidence            3568899999853     24555558899999887543332111100     0011111111  2357899998888876


Q ss_pred             eCCCeEEEEeCCCc-ceEeeeeccCCceeEEEEccCCCEEEEEeC-CCCEEEEEc
Q 015490          186 SENGNLRVFKWPSL-EIILNESEAHASVKDLSFSPDGKFLVSLGN-RGPGRVWDL  238 (406)
Q Consensus       186 ~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~-d~~i~iwd~  238 (406)
                      .....-.++++... ..+..-....+.|.|.+|.+||++|+++-. .=.-++||-
T Consensus       131 T~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  131 TARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             ecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence            66555455666432 223222355668999999999998876633 334567764

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.66  E-value=0.022  Score=48.47  Aligned_cols=165  Identities=9%  Similarity=0.192  Sum_probs=106.6

Q ss_pred             ecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCC
Q 015490          110 RTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENG  189 (406)
Q Consensus       110 ~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  189 (406)
                      .+-+..|.++.|+|+.+.|++..+..-.|..++.. +..++.+.+          .+-...-.+.+..+|++.++--.++
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~-GdlirtiPL----------~g~~DpE~Ieyig~n~fvi~dER~~  150 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKE-GDLIRTIPL----------TGFSDPETIEYIGGNQFVIVDERDR  150 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecC-CceEEEecc----------cccCChhHeEEecCCEEEEEehhcc
Confidence            34455699999999999999988776677656542 333333322          2234455678888888888877788


Q ss_pred             eEEEEeCCCcceEeee---------ecc-CCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeec---ccCC-----
Q 015490          190 NLRVFKWPSLEIILNE---------SEA-HASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPL---AKEN-----  251 (406)
Q Consensus       190 ~i~vwd~~~~~~~~~~---------~~~-~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~---~~~~-----  251 (406)
                      .+.++.+.....+...         ..+ +...-.++|.|..+.|..+-+..-+.||.+..+......   ..+.     
T Consensus       151 ~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~  230 (316)
T COG3204         151 ALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDL  230 (316)
T ss_pred             eEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccce
Confidence            8888887654322111         111 336778999999999999988888888887643311111   1111     


Q ss_pred             -cceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc
Q 015490          252 -DELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW  290 (406)
Q Consensus       252 -~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~  290 (406)
                       -..+.++.|++...+     +++.+.+++.+.-.|....
T Consensus       231 f~~DvSgl~~~~~~~~-----LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         231 FVLDVSGLEFNAITNS-----LLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             EeeccccceecCCCCc-----EEEEecCCceEEEEecCCC
Confidence             112556778877765     4455577777777777643

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.61  E-value=9e-05  Score=60.05  Aligned_cols=145  Identities=17%  Similarity=0.048  Sum_probs=84.6

Q ss_pred             EEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEee-ecCC
Q 015490          223 FLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQ-VVRE  301 (406)
Q Consensus       223 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~  301 (406)
                      .+...+.++.++-++++..+....-.........-+.++   .      -+..+..+|.|++|............ ....
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~~---~------~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e  102 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTAS---A------KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEE  102 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhhhhhhhcceeecccC---c------eEEeecccceEEEecCCccchHHHhhhcccc
Confidence            344566788888887765433222111111111112221   1      24556779999999887322211111 1112


Q ss_pred             CeEEE-EEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccc-cceEEEEEcCCCCeEEEE--ECCCcEEEEEecCCcC
Q 015490          302 PVSSF-NVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHL-GIVTALAFSYDSRALVSA--SMDSSVRVTVIEDKKK  377 (406)
Q Consensus       302 ~i~~~-~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~s~--s~dg~i~iw~~~~~~~  377 (406)
                      .|.++ .--.++.+..+++.||.|+.|++.-.+.+.... .|. .++.....+..+++++.+  |.|..++.|++..-+.
T Consensus       103 ~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g-~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d  181 (238)
T KOG2444|consen  103 SIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG-QHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKD  181 (238)
T ss_pred             cceeccccccccceeEEeccCCceeeeccccCceeeeec-cccCCCcceeEEecCCceEEeeccccchhhhhcchhhhhc
Confidence            23222 222355688899999999999999888877764 566 556666666666777777  7777788888765443

>smart00320 WD40 WD40 repeats

Probab=97.60  E-value=0.00023  Score=40.49  Aligned_cols=38  Identities=37%  Similarity=0.482  Sum_probs=32.5

Q ss_pred             eEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEE
Q 015490          333 QVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTV  371 (406)
Q Consensus       333 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~  371 (406)
                      +....+. .|...|.++.|.+++..+++++.|+.+++|+
T Consensus         3 ~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLK-GHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEE-ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            4455554 6888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>smart00320 WD40 WD40 repeats

Probab=97.54  E-value=0.00041  Score=39.40  Aligned_cols=38  Identities=34%  Similarity=0.490  Sum_probs=33.0

Q ss_pred             eEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 015490          291 KRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIID  328 (406)
Q Consensus       291 ~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d  328 (406)
                      +....+..|...+.++.|+++++++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            44566667788899999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PRK10115 protease 2; Provisional

Probab=97.51  E-value=0.09  Score=52.34  Aligned_cols=196  Identities=6%  Similarity=0.012  Sum_probs=104.6

Q ss_pred             cEEEEEECCCCCEEEEeeC-----CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCC------CCEEEEE
Q 015490          169 QQLALTFDSEGTIFAAGSE-----NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNR------GPGRVWD  237 (406)
Q Consensus       169 ~v~~~~~s~~g~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d------~~i~iwd  237 (406)
                      .+..+.|||||++|+.+..     ...|++.|+.++..+....... . ..++|++|++.|+....+      ..|+.++
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~-~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV-E-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc-c-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            4567889999998887633     3368899998876432222221 2 469999999877766542      3577788


Q ss_pred             cCCC--eeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC--CceEEEEeeecCCCeEEEEEcCCCC
Q 015490          238 LASS--AVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT--TWKRIRTKQVVREPVSSFNVSADGK  313 (406)
Q Consensus       238 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~--~~~~~~~~~~~~~~i~~~~~sp~~~  313 (406)
                      +.++  +....+.............+.+++.   +++......++.+.+++..  .+.....+.........+. +.. .
T Consensus       206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~---l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~  280 (686)
T PRK10115        206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHY---VVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQ-H  280 (686)
T ss_pred             CCCChhHCeEEEeeCCCCEEEEEEEcCCCCE---EEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCC-C
Confidence            8877  3233333222222212333335553   3455566667889999853  3332222222222223332 222 3


Q ss_pred             EEEEEeC----CCcEEEEECCCceEEEEeeccc-c-cceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490          314 LLAVGTA----SGDISIIDSSSLQVRTAVKKAH-L-GIVTALAFSYDSRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       314 ~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~-~-~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~  373 (406)
                      .+..-+.    ...|...++.+......+. .+ . ..+..+.++ .+.++++...+|.-+++-+.
T Consensus       281 ~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~-~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~  344 (686)
T PRK10115        281 RFYLRSNRHGKNFGLYRTRVRDEQQWEELI-PPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN  344 (686)
T ss_pred             EEEEEEcCCCCCceEEEecCCCcccCeEEE-CCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence            3333333    2234444554211112232 23 2 367788887 33556666777776666554

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.47  E-value=0.052  Score=46.02  Aligned_cols=209  Identities=13%  Similarity=0.068  Sum_probs=121.9

Q ss_pred             cEEEEEECCCC-CEEEEeeCCCe-EEEEeCCCcceEeeeeccCC--ceeEEEEccCCCEEEEEeC-----CCCEEEEEcC
Q 015490          169 QQLALTFDSEG-TIFAAGSENGN-LRVFKWPSLEIILNESEAHA--SVKDLSFSPDGKFLVSLGN-----RGPGRVWDLA  239 (406)
Q Consensus       169 ~v~~~~~s~~g-~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~s~s~-----d~~i~iwd~~  239 (406)
                      ....++|+|.- .-++.+-.-|+ ..++|..+.+....+....+  -.-.=.|||||.+|...-.     .|.|-|||.+
T Consensus        69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r  148 (366)
T COG3490          69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR  148 (366)
T ss_pred             ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence            34567888854 55666666555 56888887776655544333  2234568999998886643     3678999997


Q ss_pred             CCe-eeeecccCCcceEEEEEEEcCCCCceEEEEEEEcC----------------CCcEEEEEeCCCceEEEEeee----
Q 015490          240 SSA-VATPLAKENDELFASCRFSPLNNEDYVLYIAAITD----------------RGASIVTWNTTTWKRIRTKQV----  298 (406)
Q Consensus       240 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~i~~~d~~~~~~~~~~~~----  298 (406)
                      .+- .+..+..+ +-....+.|.+|++.    ++++.++                ..-.+.+.|..++..+.+...    
T Consensus       149 ~~fqrvgE~~t~-GiGpHev~lm~DGrt----lvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l  223 (366)
T COG3490         149 EGFQRVGEFSTH-GIGPHEVTLMADGRT----LVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASL  223 (366)
T ss_pred             cccceecccccC-CcCcceeEEecCCcE----EEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhh
Confidence            532 23344433 233457889999984    2333221                122455666666665544332    


Q ss_pred             cCCCeEEEEEcCCCCEEEEEeCCCc-----EEEEECCCceEEEEeec------ccccceEEEEEcCCCCeEEEEE-CCCc
Q 015490          299 VREPVSSFNVSADGKLLAVGTASGD-----ISIIDSSSLQVRTAVKK------AHLGIVTALAFSYDSRALVSAS-MDSS  366 (406)
Q Consensus       299 ~~~~i~~~~~sp~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~------~~~~~v~~~~~sp~~~~l~s~s-~dg~  366 (406)
                      +...|..++..+||+.++.+-..|.     -.+=-...++.+..+.-      .....|-+++.+.+..+++..+ ..+.
T Consensus       224 ~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~  303 (366)
T COG3490         224 RQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNR  303 (366)
T ss_pred             hhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCe
Confidence            2456888888888876665443321     11111223333333320      1234577888876555555444 5567


Q ss_pred             EEEEEecCCcCCCCch
Q 015490          367 VRVTVIEDKKKSGGLN  382 (406)
Q Consensus       367 i~iw~~~~~~~~~~~~  382 (406)
                      ..+||..++..+..-+
T Consensus       304 ~vi~da~tG~vv~~a~  319 (366)
T COG3490         304 AVIWDAATGAVVSEAA  319 (366)
T ss_pred             EEEEEcCCCcEEeccc
Confidence            8899999998765443

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.43  E-value=0.052  Score=46.14  Aligned_cols=162  Identities=18%  Similarity=0.188  Sum_probs=106.2

Q ss_pred             ceeEEEEccCCCEEEEEeCCC--CEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC
Q 015490          211 SVKDLSFSPDGKFLVSLGNRG--PGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT  288 (406)
Q Consensus       211 ~i~~~~~s~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~  288 (406)
                      --..+.|..+|.++-+.+.-|  .|+.+|+.+++............-..++...+.     ++.  ..-.++...+||..
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~-----l~q--LTWk~~~~f~yd~~  118 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDK-----LYQ--LTWKEGTGFVYDPN  118 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTE-----EEE--EESSSSEEEEEETT
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCE-----EEE--EEecCCeEEEEccc
Confidence            556788877888888887765  699999999988776655444434455555332     222  23578999999999


Q ss_pred             CceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecc-cc---cceEEEEEcCCCCeEEEEECC
Q 015490          289 TWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKA-HL---GIVTALAFSYDSRALVSASMD  364 (406)
Q Consensus       289 ~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~---~~v~~~~~sp~~~~l~s~s~d  364 (406)
                      +.+.+.++... +.=..++  .|++.|+.......++++|..+.+....+.-. ..   ..++.+.|- +|...|-.=..
T Consensus       119 tl~~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~t  194 (264)
T PF05096_consen  119 TLKKIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQT  194 (264)
T ss_dssp             TTEEEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTS
T ss_pred             cceEEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCC
Confidence            99999888765 3446777  45777777777788999999888777766411 11   235667776 56666655566


Q ss_pred             CcEEEEEecCCcCCCCchH
Q 015490          365 SSVRVTVIEDKKKSGGLNL  383 (406)
Q Consensus       365 g~i~iw~~~~~~~~~~~~~  383 (406)
                      ..|..-|..+|+.++.+.+
T Consensus       195 d~I~~Idp~tG~V~~~iDl  213 (264)
T PF05096_consen  195 DRIVRIDPETGKVVGWIDL  213 (264)
T ss_dssp             SEEEEEETTT-BEEEEEE-
T ss_pred             CeEEEEeCCCCeEEEEEEh
Confidence            6788888888888776655

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PRK10115 protease 2; Provisional

Probab=97.41  E-value=0.17  Score=50.43  Aligned_cols=241  Identities=11%  Similarity=0.042  Sum_probs=119.1

Q ss_pred             CceEEEEccCCCeEEEEe----cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCC--
Q 015490          115 LPYRMAIHPHGDGIICAL----QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSEN--  188 (406)
Q Consensus       115 ~v~~~~~sp~~~~l~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d--  188 (406)
                      .+..+.|+||+++|+.+.    +....|+..+..++..+.           ..+....  ..++|++|++.|+....+  
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~-----------~~i~~~~--~~~~w~~D~~~~~y~~~~~~  194 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYP-----------ELLDNVE--PSFVWANDSWTFYYVRKHPV  194 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCC-----------ccccCcc--eEEEEeeCCCEEEEEEecCC
Confidence            456788999999999875    223456666655432110           0111111  458999999877665432  


Q ss_pred             ----CeEEEEeCCCc--ceEeeeeccCCcee-EEEEccCCCEEEEEeC---CCCEEEEEcC--CCeeeeecccCCcceEE
Q 015490          189 ----GNLRVFKWPSL--EIILNESEAHASVK-DLSFSPDGKFLVSLGN---RGPGRVWDLA--SSAVATPLAKENDELFA  256 (406)
Q Consensus       189 ----g~i~vwd~~~~--~~~~~~~~~~~~i~-~~~~s~~~~~l~s~s~---d~~i~iwd~~--~~~~~~~~~~~~~~~~~  256 (406)
                          ..|+.+++.++  +....+........ .+..+.++++++..+.   ++.+.+++..  ++.....+....+... 
T Consensus       195 ~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-  273 (686)
T PRK10115        195 TLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEY-  273 (686)
T ss_pred             CCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEE-
Confidence                36888888877  33333333233233 3333447887665433   4578888843  3332222222222222 


Q ss_pred             EEEEEcCCCCceEEEEEEE-cCCCcEEEEEeCCCceEEEEeeec-C-CCeEEEEEcCCCCEEEEEeCCCcE--EEEECCC
Q 015490          257 SCRFSPLNNEDYVLYIAAI-TDRGASIVTWNTTTWKRIRTKQVV-R-EPVSSFNVSADGKLLAVGTASGDI--SIIDSSS  331 (406)
Q Consensus       257 ~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~-~-~~i~~~~~sp~~~~l~~~~~dg~i--~i~d~~~  331 (406)
                      .+  ...+.   .+++... +.....|...++........+..+ . ..+..+.++ .+.++++...+|.-  .+++..+
T Consensus       274 ~~--~~~~~---~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~  347 (686)
T PRK10115        274 SL--DHYQH---RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKT  347 (686)
T ss_pred             EE--EeCCC---EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCC
Confidence            11  12222   2333332 234455655566521222333333 2 367778877 33455555556654  4455443


Q ss_pred             ceEEEEeecccccceEEEEEc--CCC-CeEEEEE---CCCcEEEEEecCCc
Q 015490          332 LQVRTAVKKAHLGIVTALAFS--YDS-RALVSAS---MDSSVRVTVIEDKK  376 (406)
Q Consensus       332 ~~~~~~~~~~~~~~v~~~~~s--p~~-~~l~s~s---~dg~i~iw~~~~~~  376 (406)
                      +. +..+.......+..+.++  +++ .++++.+   .-+.+..+|+.+++
T Consensus       348 ~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        348 RE-VIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             Cc-eEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            33 333321112223333444  333 3444443   33678888877654

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.39  E-value=0.019  Score=41.49  Aligned_cols=99  Identities=15%  Similarity=0.258  Sum_probs=64.2

Q ss_pred             ceEEEEcc---CC-CeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCe
Q 015490          116 PYRMAIHP---HG-DGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGN  190 (406)
Q Consensus       116 v~~~~~sp---~~-~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  190 (406)
                      |++|++..   || ..|++|+ |..+++|.                ....+..+...+.|+++.-... ..|+.+..+|+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~----------------~~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGT   64 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFK----------------GDEIVAEITETDKVTSLCSLGG-GRFAYALANGT   64 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEe----------------CCcEEEEEecccceEEEEEcCC-CEEEEEecCCE
Confidence            56666654   33 3577776 88888865                3445555666778888887766 56889999999


Q ss_pred             EEEEeCCCcceEeeeeccCCceeEEEEcc---CCC-EEEEEeCCCCEE
Q 015490          191 LRVFKWPSLEIILNESEAHASVKDLSFSP---DGK-FLVSLGNRGPGR  234 (406)
Q Consensus       191 i~vwd~~~~~~~~~~~~~~~~i~~~~~s~---~~~-~l~s~s~d~~i~  234 (406)
                      |-+|+-  ...+......+ .+.++++..   ||. .|++|-.+|.|-
T Consensus        65 VGvY~~--~~RlWRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   65 VGVYDR--SQRLWRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EEEEeC--cceeeeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            999984  23333443333 356665543   332 678887788764

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.37  E-value=0.099  Score=46.97  Aligned_cols=179  Identities=17%  Similarity=0.186  Sum_probs=97.2

Q ss_pred             CCEEEEeeC----------CCeEEEEeCCCc----ceEee--eeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCe
Q 015490          179 GTIFAAGSE----------NGNLRVFKWPSL----EIILN--ESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSA  242 (406)
Q Consensus       179 g~~l~~~~~----------dg~i~vwd~~~~----~~~~~--~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~  242 (406)
                      ..+|++|+.          .|.|.++++...    ..+..  .....++|++++-- +++ |+++. .+.|.+|++...+
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~  118 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK  118 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc
Confidence            467777743          289999999874    12221  22345688888866 344 55444 4689999998877


Q ss_pred             -eeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEE--EeCCCceEEEEe-eecCCCeEEEEEcCCCCEEEEE
Q 015490          243 -VATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVT--WNTTTWKRIRTK-QVVREPVSSFNVSADGKLLAVG  318 (406)
Q Consensus       243 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~--~d~~~~~~~~~~-~~~~~~i~~~~~sp~~~~l~~~  318 (406)
                       ....-..+....+.++...  ++.     + +.++....+.+  |+....+....- ......++++.|-++++.++++
T Consensus       119 ~l~~~~~~~~~~~i~sl~~~--~~~-----I-~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~  190 (321)
T PF03178_consen  119 TLLKKAFYDSPFYITSLSVF--KNY-----I-LVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVG  190 (321)
T ss_dssp             SEEEEEEE-BSSSEEEEEEE--TTE-----E-EEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEE
T ss_pred             cchhhheecceEEEEEEecc--ccE-----E-EEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEE
Confidence             3333222222345555444  332     2 23333444444  455332222111 1223557888888666799999


Q ss_pred             eCCCcEEEEECCC-------c--e--EEEEeecccccceEEE---EEcCC--CC------eEEEEECCCcEEEE
Q 015490          319 TASGDISIIDSSS-------L--Q--VRTAVKKAHLGIVTAL---AFSYD--SR------ALVSASMDSSVRVT  370 (406)
Q Consensus       319 ~~dg~i~i~d~~~-------~--~--~~~~~~~~~~~~v~~~---~~sp~--~~------~l~s~s~dg~i~iw  370 (406)
                      ..+|.+.++....       +  +  ....+.  ....|+++   ++.|.  +.      .++.++.+|.|.+.
T Consensus       191 D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~--lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  191 DKDGNLFVLRYNPEIPNSRDGDPKLERISSFH--LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             ETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE---SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             cCCCeEEEEEECCCCcccccccccceeEEEEE--CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            9999999998752       1  2  223332  34557777   54552  22      37788899998844

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.36  E-value=0.087  Score=46.12  Aligned_cols=225  Identities=13%  Similarity=0.155  Sum_probs=120.7

Q ss_pred             cCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceE
Q 015490          123 PHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEII  202 (406)
Q Consensus       123 p~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~  202 (406)
                      ..++.|+.|.+..+.++..  ......            ........|..+...++-+.+++-+ |+.++++++......
T Consensus         5 ~~~~~L~vGt~~Gl~~~~~--~~~~~~------------~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~   69 (275)
T PF00780_consen    5 SWGDRLLVGTEDGLYVYDL--SDPSKP------------TRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPV   69 (275)
T ss_pred             cCCCEEEEEECCCEEEEEe--cCCccc------------eeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccc
Confidence            3567888888666666555  111111            1111223388899988777666654 599999998654433


Q ss_pred             eee--------------eccCCceeEEE--EccCCCEEEEEeCCCCEEEEEcCCC-----eeeeecccCCcceEEEEEEE
Q 015490          203 LNE--------------SEAHASVKDLS--FSPDGKFLVSLGNRGPGRVWDLASS-----AVATPLAKENDELFASCRFS  261 (406)
Q Consensus       203 ~~~--------------~~~~~~i~~~~--~s~~~~~l~s~s~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~  261 (406)
                      ...              ......+..++  -...+...+.......|.+|.....     +..+.+...  ..+..++|.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp--~~~~~i~~~  147 (275)
T PF00780_consen   70 STSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP--DPPSSIAFL  147 (275)
T ss_pred             cccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC--CCcEEEEEe
Confidence            211              11112344444  1123333344444558888887653     344444433  456788888


Q ss_pred             cCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC------------CCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 015490          262 PLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR------------EPVSSFNVSADGKLLAVGTASGDISIIDS  329 (406)
Q Consensus       262 ~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~------------~~i~~~~~sp~~~~l~~~~~dg~i~i~d~  329 (406)
                      .+.      ++++.   .....+.|+.++.....+....            .++..+... ++.+|++-  +..-.+.|.
T Consensus       148 ~~~------i~v~~---~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~  215 (275)
T PF00780_consen  148 GNK------ICVGT---SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK  215 (275)
T ss_pred             CCE------EEEEe---CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC
Confidence            332      12222   4557888888765543332111            223333333 45566543  333344454


Q ss_pred             CCceEEE--EeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCch
Q 015490          330 SSLQVRT--AVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLN  382 (406)
Q Consensus       330 ~~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~  382 (406)
                       .|++.+  .+.  -...+.++++.  ..+|+..+. +.|.||++.+++.+..++
T Consensus       216 -~G~~~r~~~i~--W~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~  264 (275)
T PF00780_consen  216 -NGEPSRKSTIQ--WSSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIP  264 (275)
T ss_pred             -CCCcCcccEEE--cCCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence             344333  222  33455666664  457777665 559999999998765543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.23  E-value=0.0063  Score=55.65  Aligned_cols=145  Identities=12%  Similarity=0.139  Sum_probs=96.4

Q ss_pred             EEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEE-EEEEEcCCCcEEEEEeCCCce--EEEEeeec-
Q 015490          224 LVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVL-YIAAITDRGASIVTWNTTTWK--RIRTKQVV-  299 (406)
Q Consensus       224 l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~i~~~d~~~~~--~~~~~~~~-  299 (406)
                      +.++.....++-.|++.|+.+.....+..  |.-+.+.|+.+...+. --+..|-.+..|.-||++-..  .+...+.| 
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d--i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq  426 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD--INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ  426 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeeccCC--cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence            33455566788899999999988876655  5566777765431110 012334457889999987422  22222222 


Q ss_pred             ---CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490          300 ---REPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       300 ---~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~  373 (406)
                         .....|.+-..+| +|++|+.+|.|++||. .+....+...+...+|..+..+.||++++.. .+..+.+-++.
T Consensus       427 y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~T-c~tyLlLi~t~  500 (644)
T KOG2395|consen  427 YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILAT-CKTYLLLIDTL  500 (644)
T ss_pred             cccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEe-cccEEEEEEEe
Confidence               2344555555555 8999999999999997 5554444444888999999999999988754 46667776653

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.21  E-value=0.053  Score=46.27  Aligned_cols=161  Identities=12%  Similarity=0.095  Sum_probs=104.6

Q ss_pred             eccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEE
Q 015490          206 SEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTW  285 (406)
Q Consensus       206 ~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~  285 (406)
                      .+.+..+.++.|+|+.+.|++......-.|+=-..|+.+.+++...-.....+.+..++.      ++.+...+..++++
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~------fvi~dER~~~l~~~  155 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQ------FVIVDERDRALYLF  155 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCE------EEEEehhcceEEEE
Confidence            444557999999999999999988888888888889998888765444455677777776      34555677777777


Q ss_pred             eCCCceEEEE-----ee-----ecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEE--eeccc-------ccce
Q 015490          286 NTTTWKRIRT-----KQ-----VVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTA--VKKAH-------LGIV  346 (406)
Q Consensus       286 d~~~~~~~~~-----~~-----~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~-------~~~v  346 (406)
                      .+.....+..     +.     ........++|+|....|..+-+..-+.||..........  ....+       -..|
T Consensus       156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv  235 (316)
T COG3204         156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV  235 (316)
T ss_pred             EEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence            6554322111     11     1134578899999998888888888788877653221110  00011       1246


Q ss_pred             EEEEEcCC-CCeEEEEECCCcEEEEEe
Q 015490          347 TALAFSYD-SRALVSASMDSSVRVTVI  372 (406)
Q Consensus       347 ~~~~~sp~-~~~l~s~s~dg~i~iw~~  372 (406)
                      .++.|.+. +..|+-+..++.+.-.|.
T Consensus       236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~  262 (316)
T COG3204         236 SGLEFNAITNSLLVLSDESRRLLEVDL  262 (316)
T ss_pred             ccceecCCCCcEEEEecCCceEEEEec
Confidence            67788864 444555555555555554

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.17  E-value=0.028  Score=53.84  Aligned_cols=181  Identities=11%  Similarity=0.147  Sum_probs=89.1

Q ss_pred             cCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEee-e--eccCCceeEEEEccCCCEEEEEeCCCCEEEE-EcCCCe
Q 015490          167 VGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILN-E--SEAHASVKDLSFSPDGKFLVSLGNRGPGRVW-DLASSA  242 (406)
Q Consensus       167 ~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~-~--~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iw-d~~~~~  242 (406)
                      ++.+..+.|+.+..++ +...+|++++|++-....... .  ......|..+.+..+|  ++.-..+|.+.+- +.... 
T Consensus        83 ~~~lI~mgWs~~eeLI-~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~-  158 (829)
T KOG2280|consen   83 HGELIGMGWSDDEELI-CVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG--VAVLTVSGQVILINGVEEP-  158 (829)
T ss_pred             CCCeeeecccCCceEE-EEeccceEEEeecchhhhcccccccccccCceeEEEEecCc--eEEEecCCcEEEEcCCCcc-
Confidence            3578899999886655 557899999999853322211 1  1112245555555555  3334444444433 33221 


Q ss_pred             eeeecccCCcceEEEEEEE--cCCCCceEEEEEEEcCCCcEEEEEeCCCc-eEEEEeeecCCCeEEEEEcCCCCEEEEEe
Q 015490          243 VATPLAKENDELFASCRFS--PLNNEDYVLYIAAITDRGASIVTWNTTTW-KRIRTKQVVREPVSSFNVSADGKLLAVGT  319 (406)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~  319 (406)
                      ...+++.-........+|.  +++.....+  +...-..+ ..++..... .....+......+..+..||+.++|+.-.
T Consensus       159 ~~~~~~diP~~~~~~~~Wt~~~~~~~~~~l--l~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt  235 (829)
T KOG2280|consen  159 KLRKMPDIPYNELPKSCWTVFQPHRQSTIL--LDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYT  235 (829)
T ss_pred             hhhhCCCCCCccCCCcceeEecCCCcceeE--Eeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEe
Confidence            1222221111111112222  222221111  11100000 011111111 11122222235678899999999999999


Q ss_pred             CCCcEEEEECCCceEEEEeecccccceEEEEEcCC
Q 015490          320 ASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYD  354 (406)
Q Consensus       320 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~  354 (406)
                      .+|.|.+-+.+..+....+......+...++|..+
T Consensus       236 ~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgn  270 (829)
T KOG2280|consen  236 ETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGN  270 (829)
T ss_pred             cCCcEEEEecchhhhhhccCCCCCCchHhceeecC
Confidence            99999999988777666654223333335666543

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.17  E-value=0.31  Score=48.53  Aligned_cols=175  Identities=16%  Similarity=0.212  Sum_probs=109.5

Q ss_pred             eEEEEeCCCcceEeeeeccCC----ceeEEEEccC-CCEEEEEeC----------CCCEEEEEcCCCeeeeeccc-CCcc
Q 015490          190 NLRVFKWPSLEIILNESEAHA----SVKDLSFSPD-GKFLVSLGN----------RGPGRVWDLASSAVATPLAK-ENDE  253 (406)
Q Consensus       190 ~i~vwd~~~~~~~~~~~~~~~----~i~~~~~s~~-~~~l~s~s~----------d~~i~iwd~~~~~~~~~~~~-~~~~  253 (406)
                      .++++|-++.+......-...    .|.++.|..| +.++++|..          .|.|.+|.+..++.+..+.. .-.+
T Consensus       751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G  830 (1096)
T KOG1897|consen  751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG  830 (1096)
T ss_pred             EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence            367777666655443322211    4556668877 667777753          47788888877433333221 1112


Q ss_pred             eEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC--CC
Q 015490          254 LFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDS--SS  331 (406)
Q Consensus       254 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~--~~  331 (406)
                      .+.++  ..-+.+    +++   +-+..|++|+..+.+.++.-..+..++..+...-.|..+++|..-+++.+...  ..
T Consensus       831 av~aL--~~fngk----llA---~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e  901 (1096)
T KOG1897|consen  831 AVYAL--VEFNGK----LLA---GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDE  901 (1096)
T ss_pred             ceeeh--hhhCCe----EEE---ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence            22222  222221    122   33678999999988777766667788999999999999999998887766544  44


Q ss_pred             ceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490          332 LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIED  374 (406)
Q Consensus       332 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~  374 (406)
                      +........-+..+.+++.+-.+..++ -+..+|.+.+-..++
T Consensus       902 g~f~evArD~~p~Wmtaveil~~d~yl-gae~~gNlf~v~~d~  943 (1096)
T KOG1897|consen  902 GNFEEVARDYNPNWMTAVEILDDDTYL-GAENSGNLFTVRKDS  943 (1096)
T ss_pred             CceEEeehhhCccceeeEEEecCceEE-eecccccEEEEEecC
Confidence            445444444577888888887665544 455678777776653

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.16  E-value=0.13  Score=44.28  Aligned_cols=149  Identities=18%  Similarity=0.124  Sum_probs=89.5

Q ss_pred             CcEEEEEECCCCCEEEEee---CCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEE-cCCCee
Q 015490          168 GQQLALTFDSEGTIFAAGS---ENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWD-LASSAV  243 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd-~~~~~~  243 (406)
                      ..+...+++++++.+|...   ....++++..  +....... ....+....|++++...+....+...+++. ..++..
T Consensus        24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~  100 (253)
T PF10647_consen   24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG  100 (253)
T ss_pred             ccccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence            3678899999998777655   2334555543  33332322 222688899999987666666666666663 333322


Q ss_pred             e-eecccCCcc-eEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC---Cc--e----EEEEeeecCCCeEEEEEcCCC
Q 015490          244 A-TPLAKENDE-LFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT---TW--K----RIRTKQVVREPVSSFNVSADG  312 (406)
Q Consensus       244 ~-~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~---~~--~----~~~~~~~~~~~i~~~~~sp~~  312 (406)
                      . ..+...... .|..+.++|+|.+   +.++.....++.|.+--+.   .+  .    ...........+..+.|.+++
T Consensus       101 ~~~~v~~~~~~~~I~~l~vSpDG~R---vA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~  177 (253)
T PF10647_consen  101 EPVEVDWPGLRGRITALRVSPDGTR---VAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS  177 (253)
T ss_pred             eeEEecccccCCceEEEEECCCCcE---EEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC
Confidence            2 222222111 7899999999997   3344444556777776432   22  1    111111223578999999999


Q ss_pred             CEEEEEeCCC
Q 015490          313 KLLAVGTASG  322 (406)
Q Consensus       313 ~~l~~~~~dg  322 (406)
                      .+++.+...+
T Consensus       178 ~L~V~~~~~~  187 (253)
T PF10647_consen  178 TLVVLGRSAG  187 (253)
T ss_pred             EEEEEeCCCC
Confidence            8887776643

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.11  E-value=0.057  Score=39.09  Aligned_cols=65  Identities=26%  Similarity=0.266  Sum_probs=47.2

Q ss_pred             EEEEEEC---CCC-CEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEc
Q 015490          170 QLALTFD---SEG-TIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDL  238 (406)
Q Consensus       170 v~~~~~s---~~g-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~  238 (406)
                      |+++++.   .|| +.|++|+.|..|++|+-+  +.+..+.. ...|.+++-... ..++.+..+|+|-+|+-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR   70 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence            4455544   344 689999999999999843  45555443 446788877665 56999999999999975

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.11  E-value=0.18  Score=48.49  Aligned_cols=194  Identities=8%  Similarity=0.006  Sum_probs=117.2

Q ss_pred             CCEEEEeeCCCeEEEEeCCCcceEeeeeccCC-cee----------EEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeec
Q 015490          179 GTIFAAGSENGNLRVFKWPSLEIILNESEAHA-SVK----------DLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPL  247 (406)
Q Consensus       179 g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~i~----------~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  247 (406)
                      +..+++++.++.|.-+|..+|+.+-.+..... .+.          .+++.  +..++.++.|+.+.-.|.++|+.+-..
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            34566667778899999999988766543211 111          12222  346777888999999999999987655


Q ss_pred             ccCCcc---eEEE-EEEEcCCCCceEEEEEEEc---CCCcEEEEEeCCCceEEEEeeecCC-------------------
Q 015490          248 AKENDE---LFAS-CRFSPLNNEDYVLYIAAIT---DRGASIVTWNTTTWKRIRTKQVVRE-------------------  301 (406)
Q Consensus       248 ~~~~~~---~~~~-~~~~~~~~~~~~l~~~~~~---~~~~~i~~~d~~~~~~~~~~~~~~~-------------------  301 (406)
                      ......   .+.+ .... ++    .+++...+   ..++.|.-+|.++++.+-.+..-..                   
T Consensus       147 ~~~~~~~~~~~tssP~v~-~g----~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~  221 (527)
T TIGR03075       147 KNGDYKAGYTITAAPLVV-KG----KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAK  221 (527)
T ss_pred             ccccccccccccCCcEEE-CC----EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccC
Confidence            432110   1111 1111 22    12222221   1368899999999887655432110                   


Q ss_pred             -------------CeEEEEEcCCCCEEEEEeCC-----C-----------cEEEEECCCceEEEEeeccccc--------
Q 015490          302 -------------PVSSFNVSADGKLLAVGTAS-----G-----------DISIIDSSSLQVRTAVKKAHLG--------  344 (406)
Q Consensus       302 -------------~i~~~~~sp~~~~l~~~~~d-----g-----------~i~i~d~~~~~~~~~~~~~~~~--------  344 (406)
                                   .-..+++.|...+++.+..+     +           .|.-.|+++++..-.++..|..        
T Consensus       222 tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~  301 (527)
T TIGR03075       222 TWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVN  301 (527)
T ss_pred             CCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCC
Confidence                         11245777777777766522     2           5777899999988777532221        


Q ss_pred             ceEEEEEcCCCC---eEEEEECCCcEEEEEecCCcCCC
Q 015490          345 IVTALAFSYDSR---ALVSASMDSSVRVTVIEDKKKSG  379 (406)
Q Consensus       345 ~v~~~~~sp~~~---~l~s~s~dg~i~iw~~~~~~~~~  379 (406)
                      ...=+....+|+   .++.+..+|.+++.|-.+++.+.
T Consensus       302 ~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~  339 (527)
T TIGR03075       302 EMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS  339 (527)
T ss_pred             CcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence            111122224666   77889999999999999998753

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.05  E-value=0.13  Score=42.48  Aligned_cols=172  Identities=13%  Similarity=0.101  Sum_probs=92.1

Q ss_pred             eEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCC---------CeEEEEeCC
Q 015490          127 GIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSEN---------GNLRVFKWP  197 (406)
Q Consensus       127 ~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d---------g~i~vwd~~  197 (406)
                      ..+++......|-+|+.......-.-    +--.++........+.-..+|+|++++-.-.|         |.++.|-..
T Consensus        72 ~~~v~~G~kf~i~nwd~~~~~a~v~~----t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~  147 (310)
T KOG4499|consen   72 EFAVGCGSKFVIVNWDGVSESAKVYR----TLFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG  147 (310)
T ss_pred             eEEEeecceEEEEEcccccceeeeee----eccccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccC
Confidence            44555566667777874321110000    00011122223455667789999985432222         334444321


Q ss_pred             CcceEeeeeccCCceeEEEEccCCCEEEEE-eCCCCEEEEE--cCCCee-----eeeccc---CCcceEEEEEEEcCCCC
Q 015490          198 SLEIILNESEAHASVKDLSFSPDGKFLVSL-GNRGPGRVWD--LASSAV-----ATPLAK---ENDELFASCRFSPLNNE  266 (406)
Q Consensus       198 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-s~d~~i~iwd--~~~~~~-----~~~~~~---~~~~~~~~~~~~~~~~~  266 (406)
                        ..+..+...-.--+.++|+.+.+.+... +.+-+|.-||  ..+|..     +..+..   ........++...+|. 
T Consensus       148 --h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~-  224 (310)
T KOG4499|consen  148 --HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGN-  224 (310)
T ss_pred             --CCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCc-
Confidence              1111122222233578999888766655 4566676677  445432     222221   1111122344444444 


Q ss_pred             ceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcC
Q 015490          267 DYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSA  310 (406)
Q Consensus       267 ~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp  310 (406)
                         +++++  -..++|...|..+++.+.++......++++||--
T Consensus       225 ---L~Va~--~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  225 ---LYVAT--FNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             ---EEEEE--ecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence               33333  4578999999999999999999999999999974

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.04  E-value=0.0029  Score=38.06  Aligned_cols=34  Identities=15%  Similarity=0.340  Sum_probs=29.9

Q ss_pred             cCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcce
Q 015490          167 VGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEI  201 (406)
Q Consensus       167 ~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~  201 (406)
                      ...|.+++|+|...++|.++.+|.|.+|.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            356899999999999999999999999998 5543

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.94  E-value=0.22  Score=42.94  Aligned_cols=137  Identities=15%  Similarity=0.118  Sum_probs=85.2

Q ss_pred             CceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEE
Q 015490          115 LPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLR  192 (406)
Q Consensus       115 ~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~  192 (406)
                      .+.+.++++++..+++..  ++...||..........             .. ....+..-.|++++...+....+...+
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~-------------~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~   90 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRP-------------VL-TGGSLTRPSWDPDGWVWTVDDGSGGVR   90 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCccee-------------ec-cCCccccccccCCCCEEEEEcCCCceE
Confidence            678999999999888776  67778888765321110             01 223667789999988777766666666


Q ss_pred             EEe-CCCcceEe-eeec--cCCceeEEEEccCCCEEEEEe---CCCCEEEEEcC---CCee--e---eecccCCcceEEE
Q 015490          193 VFK-WPSLEIIL-NESE--AHASVKDLSFSPDGKFLVSLG---NRGPGRVWDLA---SSAV--A---TPLAKENDELFAS  257 (406)
Q Consensus       193 vwd-~~~~~~~~-~~~~--~~~~i~~~~~s~~~~~l~s~s---~d~~i~iwd~~---~~~~--~---~~~~~~~~~~~~~  257 (406)
                      ++. ..++.... .+..  ....|..+.+||||..++...   .++.|.+--+.   .+..  +   ..+.......+..
T Consensus        91 ~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~  170 (253)
T PF10647_consen   91 VVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTD  170 (253)
T ss_pred             EEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCccee
Confidence            664 23332221 1111  112799999999999888776   34667666543   2201  0   1111122345788


Q ss_pred             EEEEcCCC
Q 015490          258 CRFSPLNN  265 (406)
Q Consensus       258 ~~~~~~~~  265 (406)
                      +.|.+++.
T Consensus       171 v~W~~~~~  178 (253)
T PF10647_consen  171 VAWSDDST  178 (253)
T ss_pred             eeecCCCE
Confidence            99999987

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.89  E-value=0.54  Score=47.21  Aligned_cols=200  Identities=9%  Similarity=0.042  Sum_probs=115.9

Q ss_pred             CCEEEEeeCCCeEEEEeCCCcceEeeeeccCC--------ceeEEEEcc----------------CCCEEEEEeCCCCEE
Q 015490          179 GTIFAAGSENGNLRVFKWPSLEIILNESEAHA--------SVKDLSFSP----------------DGKFLVSLGNRGPGR  234 (406)
Q Consensus       179 g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--------~i~~~~~s~----------------~~~~l~s~s~d~~i~  234 (406)
                      +..++.++.++.|.-.|..+|+.+-++.....        ..+.+++..                .+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            34566667778888888888887766543221        112233321                234788888999999


Q ss_pred             EEEcCCCeeeeecccCCcc-----------eEEEEEEEc--CCCCceEEEEEEEc-------CCCcEEEEEeCCCceEEE
Q 015490          235 VWDLASSAVATPLAKENDE-----------LFASCRFSP--LNNEDYVLYIAAIT-------DRGASIVTWNTTTWKRIR  294 (406)
Q Consensus       235 iwd~~~~~~~~~~~~~~~~-----------~~~~~~~~~--~~~~~~~l~~~~~~-------~~~~~i~~~d~~~~~~~~  294 (406)
                      -.|.++|+....+.....-           ....+.-.|  .+.   .+++-...       ..+|.|+-+|.++++.+-
T Consensus       274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g---~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W  350 (764)
T TIGR03074       274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGT---TVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW  350 (764)
T ss_pred             EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECC---EEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence            9999999988665321100           000000011  011   12222111       126889999999999877


Q ss_pred             Eeeec---------C---------CCeEEEEEcCCCCEEEEEe------------------CCCcEEEEECCCceEEEEe
Q 015490          295 TKQVV---------R---------EPVSSFNVSADGKLLAVGT------------------ASGDISIIDSSSLQVRTAV  338 (406)
Q Consensus       295 ~~~~~---------~---------~~i~~~~~sp~~~~l~~~~------------------~dg~i~i~d~~~~~~~~~~  338 (406)
                      .+...         .         ..-..++++++...++.+.                  ..+.|.-.|.++++..-.+
T Consensus       351 ~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~  430 (764)
T TIGR03074       351 AWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVF  430 (764)
T ss_pred             EEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEe
Confidence            66421         0         0113455666555554432                  1345777888899888777


Q ss_pred             eccccc--------ceEEEEEcC-CCC---eEEEEECCCcEEEEEecCCcCCCCc
Q 015490          339 KKAHLG--------IVTALAFSY-DSR---ALVSASMDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       339 ~~~~~~--------~v~~~~~sp-~~~---~l~s~s~dg~i~iw~~~~~~~~~~~  381 (406)
                      +..|.+        ...=+.+.. +|+   .++.++.+|.+++.|-++++.+-.+
T Consensus       431 Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~  485 (764)
T TIGR03074       431 QTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV  485 (764)
T ss_pred             cccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence            543321        011112222 553   7889999999999999999876543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.87  E-value=0.24  Score=42.22  Aligned_cols=189  Identities=15%  Similarity=0.200  Sum_probs=113.5

Q ss_pred             eeccccc--CcEEEEEECCCCCEEEEeeCCC--eEEEEeCCCcceEeeeeccCC-ceeEEEEccCCCEEEEEeCCCCEEE
Q 015490          161 LSQLENV--GQQLALTFDSEGTIFAAGSENG--NLRVFKWPSLEIILNESEAHA-SVKDLSFSPDGKFLVSLGNRGPGRV  235 (406)
Q Consensus       161 ~~~~~~~--~~v~~~~~s~~g~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~s~s~d~~i~i  235 (406)
                      +..+.|.  ..-..+.|..+|.++-+.+.-|  .|+.+|+.+++......-... ---.++... ++...-.=.++...+
T Consensus        36 v~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~  114 (264)
T PF05096_consen   36 VETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFV  114 (264)
T ss_dssp             EEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEE
T ss_pred             EEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEE
Confidence            3444454  3345788877888887777665  799999999987755543332 233445443 333333446888999


Q ss_pred             EEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC-----CCeEEEEEcC
Q 015490          236 WDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR-----EPVSSFNVSA  310 (406)
Q Consensus       236 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-----~~i~~~~~sp  310 (406)
                      ||..+.+.+.++......  ..++  .++..     + ..++....|+.+|..+.+..+.+....     ..+..+.|- 
T Consensus       115 yd~~tl~~~~~~~y~~EG--WGLt--~dg~~-----L-i~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-  183 (264)
T PF05096_consen  115 YDPNTLKKIGTFPYPGEG--WGLT--SDGKR-----L-IMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-  183 (264)
T ss_dssp             EETTTTEEEEEEE-SSS----EEE--ECSSC-----E-EEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-
T ss_pred             EccccceEEEEEecCCcc--eEEE--cCCCE-----E-EEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-
Confidence            999999888877654332  2343  55554     2 233557899999999888777665432     245556665 


Q ss_pred             CCCEEEEEeCCCcEEEEECCCceEEEEeec-----------cc---ccceEEEEEcCCCCe-EEEE
Q 015490          311 DGKLLAVGTASGDISIIDSSSLQVRTAVKK-----------AH---LGIVTALAFSYDSRA-LVSA  361 (406)
Q Consensus       311 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----------~~---~~~v~~~~~sp~~~~-l~s~  361 (406)
                      +|...|=.-....|...|..+|+....+.-           .+   ..-.+.|++.|.... ++||
T Consensus       184 ~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  184 NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            565555444567788889999998876640           01   234789999887554 4555

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.84  E-value=0.0061  Score=60.39  Aligned_cols=73  Identities=21%  Similarity=0.365  Sum_probs=56.5

Q ss_pred             ccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCC---ceeEEEEccCCCEEEEEeCCCCEEEEEc
Q 015490          164 LENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHA---SVKDLSFSPDGKFLVSLGNRGPGRVWDL  238 (406)
Q Consensus       164 ~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~---~i~~~~~s~~~~~l~s~s~d~~i~iwd~  238 (406)
                      ....++|++++|+.+|..++.|-.+|.|.+||+.+++....+..+..   .|..+.+..++..++++...|.  +|.+
T Consensus       127 e~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  127 ERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             CccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            34568999999999999999999999999999999888877766555   3444555556667777777775  4543

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.80  E-value=0.0048  Score=61.06  Aligned_cols=98  Identities=18%  Similarity=0.272  Sum_probs=69.7

Q ss_pred             EEEcCCCcEEEEEeCCCc-eEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEE--
Q 015490          273 AAITDRGASIVTWNTTTW-KRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTAL--  349 (406)
Q Consensus       273 ~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~--  349 (406)
                      ++.++..|.+...|.... .+...-....++|++++|+.+|+.++.|-.+|.|.+||+..++..+.+. .|..+.+++  
T Consensus       102 ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~-e~~ap~t~vi~  180 (1206)
T KOG2079|consen  102 IVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT-EHGAPVTGVIF  180 (1206)
T ss_pred             EEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee-ecCCccceEEE
Confidence            455566777777777652 2112222235789999999999999999999999999999998888875 555554444  


Q ss_pred             -EEcCCCCeEEEEECCCcEEEEEec
Q 015490          350 -AFSYDSRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       350 -~~sp~~~~l~s~s~dg~i~iw~~~  373 (406)
                       .+..++..++++...|.  +|.+.
T Consensus       181 v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  181 VGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             EEEeCCCcEEEEccCCCc--eEEEE
Confidence             44456666777766665  77764

>PHA02713 hypothetical protein; Provisional

Probab=96.80  E-value=0.18  Score=48.93  Aligned_cols=187  Identities=10%  Similarity=0.025  Sum_probs=90.4

Q ss_pred             CCCEEEEeeCC------CeEEEEeCCCcceEee--eeccCCceeEEEEccCCCEEEEEeCCC-----CEEEEEcCCCeee
Q 015490          178 EGTIFAAGSEN------GNLRVFKWPSLEIILN--ESEAHASVKDLSFSPDGKFLVSLGNRG-----PGRVWDLASSAVA  244 (406)
Q Consensus       178 ~g~~l~~~~~d------g~i~vwd~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~s~s~d~-----~i~iwd~~~~~~~  244 (406)
                      ++..++.|+.+      ..+..||..+......  +....... +++ .-+|+..+.|+.++     ++..||..+.+-.
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~  380 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA-VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK  380 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE-EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence            66777777753      3577888876643211  11111111 222 22577777777653     4788998776433


Q ss_pred             eecccCCcceEEEEEEEcCCCCceEEEEEEEcCC---------------------CcEEEEEeCCCceE--EEEeeecCC
Q 015490          245 TPLAKENDELFASCRFSPLNNEDYVLYIAAITDR---------------------GASIVTWNTTTWKR--IRTKQVVRE  301 (406)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------------------~~~i~~~d~~~~~~--~~~~~~~~~  301 (406)
                      ..-.......-.+++ .-++.    +|++.....                     -..+..||..+.+-  +..+.....
T Consensus       381 ~~~~mp~~r~~~~~~-~~~g~----IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~  455 (557)
T PHA02713        381 MLPDMPIALSSYGMC-VLDQY----IYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI  455 (557)
T ss_pred             ECCCCCcccccccEE-EECCE----EEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccc
Confidence            211111111001111 11232    333321110                     13577888776432  222211111


Q ss_pred             CeEEEEEcCCCCEEEEEeCC------CcEEEEECCC-ce--EEEEeecccccceEEEEEcCCCCeEEEEECCC--cEEEE
Q 015490          302 PVSSFNVSADGKLLAVGTAS------GDISIIDSSS-LQ--VRTAVKKAHLGIVTALAFSYDSRALVSASMDS--SVRVT  370 (406)
Q Consensus       302 ~i~~~~~sp~~~~l~~~~~d------g~i~i~d~~~-~~--~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg--~i~iw  370 (406)
                      .. +++ .-+++..++|+.+      ..+..||..+ .+  .+..+. ........+.+  +|+..++|+.|+  .+..|
T Consensus       456 ~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~-~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~y  530 (557)
T PHA02713        456 RP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE-SRLSALHTILH--DNTIMMLHCYESYMLQDTF  530 (557)
T ss_pred             cC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC-cccccceeEEE--CCEEEEEeeecceeehhhc
Confidence            11 122 2246666667653      2467899876 33  333332 11122222222  678888999888  67777


Q ss_pred             EecCCc
Q 015490          371 VIEDKK  376 (406)
Q Consensus       371 ~~~~~~  376 (406)
                      |..+.+
T Consensus       531 d~~~~~  536 (557)
T PHA02713        531 NVYTYE  536 (557)
T ss_pred             Cccccc
Confidence            776654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.79  E-value=0.0055  Score=36.90  Aligned_cols=35  Identities=11%  Similarity=0.129  Sum_probs=30.8

Q ss_pred             cccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490          342 HLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       342 ~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      ....|..++|+|...+||.++.||.|.++.+ ++++
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            4457999999999999999999999999999 5554

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.69  E-value=0.045  Score=54.94  Aligned_cols=158  Identities=15%  Similarity=0.083  Sum_probs=94.8

Q ss_pred             eEEecC-CCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCC-CEEE
Q 015490          107 AELRTD-SDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEG-TIFA  183 (406)
Q Consensus       107 ~~~~~h-~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~  183 (406)
                      ..++-| .-++..+...+|+...++.. .+...|+.+|..+..........+-......+.......++.|+|.- ...+
T Consensus        93 ~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~a  172 (1405)
T KOG3630|consen   93 LTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSA  172 (1405)
T ss_pred             cceeeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhh
Confidence            344433 34567777788888776654 45566777776544332211110000001111222446788999854 3455


Q ss_pred             EeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecc---cCCcceEEEEEE
Q 015490          184 AGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLA---KENDELFASCRF  260 (406)
Q Consensus       184 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~  260 (406)
                      +...|+.|++..+........-..-....++++|+|.|+.++.|-..|++.-|... ++....+.   ......+.++.|
T Consensus       173 v~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~W  251 (1405)
T KOG3630|consen  173 VDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTW  251 (1405)
T ss_pred             hhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEE
Confidence            66778999988775433222222333478999999999999999999999988763 33333332   223456888888


Q ss_pred             EcCCC
Q 015490          261 SPLNN  265 (406)
Q Consensus       261 ~~~~~  265 (406)
                      -....
T Consensus       252 l~t~e  256 (1405)
T KOG3630|consen  252 LSTQE  256 (1405)
T ss_pred             eccee
Confidence            87655

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.68  E-value=0.82  Score=45.76  Aligned_cols=246  Identities=15%  Similarity=0.161  Sum_probs=128.3

Q ss_pred             CCCceEEEEccCC--C----eEEEEe-cCCeEEEEEecccccceeecceeccceeeecccc---cCcEEEEEECCCCCEE
Q 015490          113 SDLPYRMAIHPHG--D----GIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLEN---VGQQLALTFDSEGTIF  182 (406)
Q Consensus       113 ~~~v~~~~~sp~~--~----~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~g~~l  182 (406)
                      +..|.|+.++|-|  +    ++++|. +..+.+.....+ ......          ..+..   +..|.-..|-.|..+|
T Consensus       530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd-~~~~~~----------~~l~~~~iPRSIl~~~~e~d~~yL  598 (1096)
T KOG1897|consen  530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPD-LILITH----------EQLSGEIIPRSILLTTFEGDIHYL  598 (1096)
T ss_pred             cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCC-cceeee----------eccCCCccchheeeEEeeccceEE
Confidence            5678999999853  2    455564 555444333322 111110          01111   2345555666678899


Q ss_pred             EEeeCCCeEEEEeCC--CcceEeee--eccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEE
Q 015490          183 AAGSENGNLRVFKWP--SLEIILNE--SEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASC  258 (406)
Q Consensus       183 ~~~~~dg~i~vwd~~--~~~~~~~~--~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  258 (406)
                      .++..||.+.-|.++  ++.....-  .-...++.--.|+..++.-+.+..|+-..+|..+..-....+....-  -..+
T Consensus       599 lvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev--~~~c  676 (1096)
T KOG1897|consen  599 LVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEV--NHMC  676 (1096)
T ss_pred             EEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHh--hhhc
Confidence            999999998877654  44332111  12233566566766555444455566666776543322222221111  1123


Q ss_pred             EEEcCCCCceEEEEEEEcCCCcEEEEEeCCCce--EEEEeeecCCCeEEEEEcCCCCEEEEEeCC--------------C
Q 015490          259 RFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK--RIRTKQVVREPVSSFNVSADGKLLAVGTAS--------------G  322 (406)
Q Consensus       259 ~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d--------------g  322 (406)
                      .|+.+.-.+.+  +.+   ..+.+.+.-++.-+  .+++...+ .....+++.+....+++.+..              .
T Consensus       677 ~f~s~a~~d~l--~~~---~~~~l~i~tid~iqkl~irtvpl~-~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s  750 (1096)
T KOG1897|consen  677 PFNSDAYPDSL--ASA---NGGALTIGTIDEIQKLHIRTVPLG-ESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVS  750 (1096)
T ss_pred             ccccccCCceE--EEe---cCCceEEEEecchhhcceeeecCC-CChhheEecccceEEEEEecccccchhhcCCcceEE
Confidence            34333222111  111   23445555443322  23333333 456778888755555444321              2


Q ss_pred             cEEEEECCCceEEEEeeccccc---ceEEEEEcCC-CCeEEEEE----------CCCcEEEEEecCCcC
Q 015490          323 DISIIDSSSLQVRTAVKKAHLG---IVTALAFSYD-SRALVSAS----------MDSSVRVTVIEDKKK  377 (406)
Q Consensus       323 ~i~i~d~~~~~~~~~~~~~~~~---~v~~~~~sp~-~~~l~s~s----------~dg~i~iw~~~~~~~  377 (406)
                      .++++|-++.+.+.........   .+.++.|..| +.++++|+          ..|.|.++.+...++
T Consensus       751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~  819 (1096)
T KOG1897|consen  751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS  819 (1096)
T ss_pred             EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc
Confidence            3788888887776654322223   3455568887 67777775          348899999887444

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.57  E-value=0.43  Score=41.26  Aligned_cols=209  Identities=13%  Similarity=0.129  Sum_probs=120.6

Q ss_pred             cEEEEEECCCCCEEEEeeCCCeEEEEeCC------Cc-ceEeeeec-----cCCceeEEEEccCCC------------EE
Q 015490          169 QQLALTFDSEGTIFAAGSENGNLRVFKWP------SL-EIILNESE-----AHASVKDLSFSPDGK------------FL  224 (406)
Q Consensus       169 ~v~~~~~s~~g~~l~~~~~dg~i~vwd~~------~~-~~~~~~~~-----~~~~i~~~~~s~~~~------------~l  224 (406)
                      .-..++++|.+.+-++....+...+||..      .. ..+..+..     .....+.+.|+....            .+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            45689999999888887788899999986      12 12233331     122567777764322            36


Q ss_pred             EEEeCCCCEEEEEcCCCee-----eeeccc-CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEE--Ee
Q 015490          225 VSLGNRGPGRVWDLASSAV-----ATPLAK-ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIR--TK  296 (406)
Q Consensus       225 ~s~s~d~~i~iwd~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~--~~  296 (406)
                      +.+++||+|.-|...-+..     ...+.. ........+++...+.. ..  +.++.-..++|.++|-.-.+...  .+
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~-~~--LYaadF~~g~IDVFd~~f~~~~~~g~F  180 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGG-DY--LYAANFRQGRIDVFKGSFRPPPLPGSF  180 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCC-ce--EEEeccCCCceEEecCccccccCCCCc
Confidence            7789999999998533222     112221 12444566777755332 12  33444568899999865332210  01


Q ss_pred             eecC-------CCe---------EEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEee-cccccceEEEEEcC------
Q 015490          297 QVVR-------EPV---------SSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVK-KAHLGIVTALAFSY------  353 (406)
Q Consensus       297 ~~~~-------~~i---------~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~sp------  353 (406)
                      ....       ..|         +-..-.++++.=+.|..-|.|-+||+. ++.++++. .+.-...+.|+..|      
T Consensus       181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~  259 (336)
T TIGR03118       181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSL  259 (336)
T ss_pred             cCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCC
Confidence            1100       001         111112222222233335789999986 67777663 23334566788766      


Q ss_pred             CCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490          354 DSRALVSASMDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       354 ~~~~l~s~s~dg~i~iw~~~~~~~~~~~  381 (406)
                      .|.+|+---.||+|..+|..+++.++.+
T Consensus       260 sg~lLVGNFGDG~InaFD~~sG~~~g~L  287 (336)
T TIGR03118       260 SGALLVGNFGDGTINAYDPQSGAQLGQL  287 (336)
T ss_pred             CCCeEEeecCCceeEEecCCCCceeeee
Confidence            4666665567999999999988766544

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.50  E-value=0.38  Score=39.77  Aligned_cols=136  Identities=13%  Similarity=0.142  Sum_probs=81.3

Q ss_pred             ceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCc-------ceEEEEEEEcCCCCceEEEEEEEcCCCcEEE
Q 015490          211 SVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKEND-------ELFASCRFSPLNNEDYVLYIAAITDRGASIV  283 (406)
Q Consensus       211 ~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~  283 (406)
                      ..++-..+|+|++++-...|-.- .+....+.....+..|+-       .....++|+.+.+.   +|  ...+.+-.|.
T Consensus       110 R~NDgkvdP~Gryy~GtMad~~~-~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~---fY--~iDsln~~V~  183 (310)
T KOG4499|consen  110 RLNDGKVDPDGRYYGGTMADFGD-DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKK---FY--YIDSLNYEVD  183 (310)
T ss_pred             ccccCccCCCCceeeeeeccccc-cccccccEEEEeccCCCceeeehhccCCccccccccCcE---EE--EEccCceEEe
Confidence            56677789999985433222111 222222222222222221       12346788877774   33  3345566776


Q ss_pred             EEe--CCCceE-----EEEeeec----CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEc
Q 015490          284 TWN--TTTWKR-----IRTKQVV----REPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFS  352 (406)
Q Consensus       284 ~~d--~~~~~~-----~~~~~~~----~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s  352 (406)
                      -||  ..++..     +..++..    ....-.++..-+|++.++.-..++|..+|..+++.+.++. -....|++++|-
T Consensus       184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eik-lPt~qitsccFg  262 (310)
T KOG4499|consen  184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIK-LPTPQITSCCFG  262 (310)
T ss_pred             eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEE-cCCCceEEEEec
Confidence            666  555432     3333221    1112345667788888888889999999999999999997 567889999996


Q ss_pred             C
Q 015490          353 Y  353 (406)
Q Consensus       353 p  353 (406)
                      -
T Consensus       263 G  263 (310)
T KOG4499|consen  263 G  263 (310)
T ss_pred             C
Confidence            4

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.47  E-value=0.13  Score=48.27  Aligned_cols=115  Identities=9%  Similarity=0.178  Sum_probs=72.0

Q ss_pred             CcEEEEEECCCC-----CEEEEeeCCCeEEEEeCC-----CcceEeeeeccC-C----ceeEEEEccCCCEEEEEeCCCC
Q 015490          168 GQQLALTFDSEG-----TIFAAGSENGNLRVFKWP-----SLEIILNESEAH-A----SVKDLSFSPDGKFLVSLGNRGP  232 (406)
Q Consensus       168 ~~v~~~~~s~~g-----~~l~~~~~dg~i~vwd~~-----~~~~~~~~~~~~-~----~i~~~~~s~~~~~l~s~s~d~~  232 (406)
                      ..|..+.|.|-+     .+||+ .....|.||.+.     +++.+.....+- .    --..+.|+|....|++-.....
T Consensus        57 EhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv  135 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV  135 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEE-eccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce
Confidence            458899999843     35555 556799999984     222222211111 1    2356889999888887776655


Q ss_pred             EEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC
Q 015490          233 GRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT  288 (406)
Q Consensus       233 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~  288 (406)
                      -.+++++.............+.|.|.+|.+||++    ++++.++ .-.-++||-.
T Consensus       136 SV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~R----LVVAvGS-sLHSyiWd~~  186 (671)
T PF15390_consen  136 SVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQR----LVVAVGS-SLHSYIWDSA  186 (671)
T ss_pred             eEeeeeeeCCceEEEeccCCceEEEEEecCcCCE----EEEEeCC-eEEEEEecCc
Confidence            5666765443333333345667999999999997    3444443 5556788754

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=96.44  E-value=0.0077  Score=58.60  Aligned_cols=214  Identities=12%  Similarity=0.084  Sum_probs=117.0

Q ss_pred             EecCCCCceEEEEccCC-CeEEEEecCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCCEEEEee
Q 015490          109 LRTDSDLPYRMAIHPHG-DGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIFAAGS  186 (406)
Q Consensus       109 ~~~h~~~v~~~~~sp~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~  186 (406)
                      +++.++.|..++|.... ..+. ---+...+|+++...++....+.+.+..    .+... ..|..+-|-++.-++..+-
T Consensus       128 ~kgf~G~v~dl~fah~~~pk~~-~~vg~lfVy~vd~l~G~iq~~l~v~~~~----p~gs~~~~V~wcp~~~~~~~ic~~~  202 (1283)
T KOG1916|consen  128 AKGFPGGVGDLQFAHTKCPKGR-RLVGELFVYDVDVLQGEIQPQLEVTPIT----PYGSDPQLVSWCPIAVNKVYICYGL  202 (1283)
T ss_pred             HhcCCCCcccccccccCChHHH-HHhhhhheeehHhhccccccceEEeecC----cCCCCcceeeecccccccceeeecc
Confidence            44556777777774321 1111 1123456777777666554444332111    11111 2344444455677888888


Q ss_pred             CCCeEEEEeCCCcceEeeeeccCCceeEEE-----------EccCCCEEEEEeCCCCEEEEEcC-----CCeeeeecccC
Q 015490          187 ENGNLRVFKWPSLEIILNESEAHASVKDLS-----------FSPDGKFLVSLGNRGPGRVWDLA-----SSAVATPLAKE  250 (406)
Q Consensus       187 ~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~-----------~s~~~~~l~s~s~d~~i~iwd~~-----~~~~~~~~~~~  250 (406)
                      .+++|++..+++... .-+..|...+.+++           .||||+.+++++.||.++.|.+-     ..++.+..+.|
T Consensus       203 ~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkph  281 (1283)
T KOG1916|consen  203 KGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPH  281 (1283)
T ss_pred             CCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCC
Confidence            899999988765433 22233433444332           58999999999999998877652     33444555555


Q ss_pred             CcceEEEEEEEcCCCC----ceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCE------------
Q 015490          251 NDELFASCRFSPLNNE----DYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKL------------  314 (406)
Q Consensus       251 ~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~------------  314 (406)
                      .+.+-.|.-|+.....    .+..+.+.+.+.+..+++|....++++..+.  ...|..+. -++|..            
T Consensus       282 d~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~--~d~v~iV~-p~~~~v~~~~~~~~~~~~  358 (1283)
T KOG1916|consen  282 DKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKL--IDGVQIVG-PHDGEVTDLSMCQWMTTR  358 (1283)
T ss_pred             CCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhc--ccceEeec-CCCccccchhhhHHHHHH
Confidence            4333322223322211    1234456667788899999998888763222  12344444 333331            


Q ss_pred             EEEEeCCCcEEEEECCC
Q 015490          315 LAVGTASGDISIIDSSS  331 (406)
Q Consensus       315 l~~~~~dg~i~i~d~~~  331 (406)
                      ++.-+-++.|.+|.-+.
T Consensus       359 ~v~r~v~~~i~~~qn~~  375 (1283)
T KOG1916|consen  359 LVSRSVDGTIKIWQNRK  375 (1283)
T ss_pred             HHHhhhHHHHHHhhcch
Confidence            22334477788886443

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.39  E-value=0.011  Score=48.40  Aligned_cols=140  Identities=11%  Similarity=0.070  Sum_probs=77.4

Q ss_pred             EeeCCCeEEEEeCCCcceEeeeec-cCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEc
Q 015490          184 AGSENGNLRVFKWPSLEIILNESE-AHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSP  262 (406)
Q Consensus       184 ~~~~dg~i~vwd~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  262 (406)
                      .-+.||.|+-++++.-+....-.. +...-..+.   -+..+++|+.+|.|.+|..................+.++  -|
T Consensus        35 ~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~---~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~--Ip  109 (238)
T KOG2444|consen   35 ATSADGLVRERKVRKHKESCRSERFIDEGQRVVT---ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG--IP  109 (238)
T ss_pred             cccCCcccccchhhhhhhhhhhhhhhhcceeecc---cCceEEeecccceEEEecCCccchHHHhhhcccccceec--cc
Confidence            335677887777654332211111 111111122   345789999999999998863221111111111122121  12


Q ss_pred             CCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC-CCeEEEEEcCCCCEEEEE--eCCCcEEEEECCC
Q 015490          263 LNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR-EPVSSFNVSADGKLLAVG--TASGDISIIDSSS  331 (406)
Q Consensus       263 ~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~--~~dg~i~i~d~~~  331 (406)
                      .++..   .+..++..++.|+.|+..-.+.+.....|. .++.....+..+++++.+  +.|..++.|++..
T Consensus       110 ~~~~~---~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  110 NGRDS---SLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ccccc---ceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            22210   145666789999999998877776666665 445555555556667766  6677777777754

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.35  E-value=0.81  Score=41.88  Aligned_cols=194  Identities=18%  Similarity=0.158  Sum_probs=91.5

Q ss_pred             CCCEEEEee-CCCeEEEEeCCCc----ceEeeeec---cC----CceeEEEEccCCCEEEEEeC------CCCEEEEEcC
Q 015490          178 EGTIFAAGS-ENGNLRVFKWPSL----EIILNESE---AH----ASVKDLSFSPDGKFLVSLGN------RGPGRVWDLA  239 (406)
Q Consensus       178 ~g~~l~~~~-~dg~i~vwd~~~~----~~~~~~~~---~~----~~i~~~~~s~~~~~l~s~s~------d~~i~iwd~~  239 (406)
                      +.++|+..+ ..+.|+|+|+.+.    +....+..   ..    .....+..-|+|+.++++-.      -|.+.++|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            345666655 6789999998632    22322221   11    12334555678988887632      2457888888


Q ss_pred             CCeeeeecccCC--cceEEEEEEEcCCCCceEEEEEEE-------------------cCCCcEEEEEeCCCceEEEEeee
Q 015490          240 SSAVATPLAKEN--DELFASCRFSPLNNEDYVLYIAAI-------------------TDRGASIVTWNTTTWKRIRTKQV  298 (406)
Q Consensus       240 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~-------------------~~~~~~i~~~d~~~~~~~~~~~~  298 (406)
                      +.+.........  ...-..+.|.|..+.     ++.+                   +.....+.+||+.+.+.++++..
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nv-----MiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idL  240 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNV-----MISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDL  240 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTE-----EEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCE-----EEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEec
Confidence            777766665432  223456777776652     2222                   12357899999999999999887


Q ss_pred             cCCC--eEEEEEc--CCCCEEEEEeC-CCcEEEEEC-CCce----EEEEeec----cc------------ccceEEEEEc
Q 015490          299 VREP--VSSFNVS--ADGKLLAVGTA-SGDISIIDS-SSLQ----VRTAVKK----AH------------LGIVTALAFS  352 (406)
Q Consensus       299 ~~~~--i~~~~~s--p~~~~l~~~~~-dg~i~i~d~-~~~~----~~~~~~~----~~------------~~~v~~~~~s  352 (406)
                      ....  ...+.|.  |+..+=++++. .++|..|-- ..++    .+..+..    +-            ..-|+.|..|
T Consensus       241 g~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS  320 (461)
T PF05694_consen  241 GEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS  320 (461)
T ss_dssp             -TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-
T ss_pred             CCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc
Confidence            6422  3455554  44555444443 555555533 3332    1111110    00            2347899999


Q ss_pred             CCCCeEEEEE-CCCcEEEEEecCCc
Q 015490          353 YDSRALVSAS-MDSSVRVTVIEDKK  376 (406)
Q Consensus       353 p~~~~l~s~s-~dg~i~iw~~~~~~  376 (406)
                      .|.++|...+ .+|.|+.||+.++.
T Consensus       321 lDDrfLYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  321 LDDRFLYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred             cCCCEEEEEcccCCcEEEEecCCCC
Confidence            9999987665 68999999998754

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PHA02713 hypothetical protein; Provisional

Probab=96.31  E-value=0.43  Score=46.40  Aligned_cols=150  Identities=15%  Similarity=0.160  Sum_probs=76.2

Q ss_pred             CCCEEEEeeCCC-----eEEEEeCCCcceEe--eeeccCCceeEEEEccCCCEEEEEeCCC-------------------
Q 015490          178 EGTIFAAGSENG-----NLRVFKWPSLEIIL--NESEAHASVKDLSFSPDGKFLVSLGNRG-------------------  231 (406)
Q Consensus       178 ~g~~l~~~~~dg-----~i~vwd~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~s~s~d~-------------------  231 (406)
                      +|++.+.|+.++     ++..||..+.+-..  .+.........+.  -+++..+.|+.++                   
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~  428 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT  428 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccc
Confidence            678888888754     48889987654332  1111111112222  2577677776542                   


Q ss_pred             ----CEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCC----CcEEEEEeCCC---ceEEEEeeecC
Q 015490          232 ----PGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDR----GASIVTWNTTT---WKRIRTKQVVR  300 (406)
Q Consensus       232 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~i~~~d~~~---~~~~~~~~~~~  300 (406)
                          .+..||..+.+-...-.......-.+++ .-++.    +|++...+.    ...+..||..+   +..+..+....
T Consensus       429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~-~~~~~----IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r  503 (557)
T PHA02713        429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV-SHKDD----IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL  503 (557)
T ss_pred             cccceEEEECCCCCeEeecCCCCcccccCcEE-EECCE----EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc
Confidence                4677888776543221111111111121 22232    333322111    13467899876   34444443333


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCC--cEEEEECCCceEEE
Q 015490          301 EPVSSFNVSADGKLLAVGTASG--DISIIDSSSLQVRT  336 (406)
Q Consensus       301 ~~i~~~~~sp~~~~l~~~~~dg--~i~i~d~~~~~~~~  336 (406)
                      .....+.+  +|+..++|+.++  .+..||..+.+-..
T Consensus       504 ~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~  539 (557)
T PHA02713        504 SALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNH  539 (557)
T ss_pred             ccceeEEE--CCEEEEEeeecceeehhhcCcccccccc
Confidence            33333333  578888998888  67788877665443

>PHA03098 kelch-like protein; Provisional

Probab=96.31  E-value=0.3  Score=47.42  Aligned_cols=188  Identities=11%  Similarity=0.066  Sum_probs=86.8

Q ss_pred             CCCCEEEEeeCCC------eEEEEeCCCcceEeeeec---cCCceeEEEEccCCCEEEEEeCC-----CCEEEEEcCCCe
Q 015490          177 SEGTIFAAGSENG------NLRVFKWPSLEIILNESE---AHASVKDLSFSPDGKFLVSLGNR-----GPGRVWDLASSA  242 (406)
Q Consensus       177 ~~g~~l~~~~~dg------~i~vwd~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~s~s~d-----~~i~iwd~~~~~  242 (406)
                      .++..++.|+.++      .+..||..+.+... ...   .......+.  -+++..+.|+.+     ..+..||..+.+
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~  369 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESK  369 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence            3556677776542      57788887665432 211   111122222  256677777765     347778887654


Q ss_pred             eeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCC----cEEEEEeCCCceEEE--EeeecCCCeEEEEEcCCCCEEE
Q 015490          243 VATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRG----ASIVTWNTTTWKRIR--TKQVVREPVSSFNVSADGKLLA  316 (406)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~i~~~d~~~~~~~~--~~~~~~~~i~~~~~sp~~~~l~  316 (406)
                      -...-.......-.+++ .-++.    +|++.....+    ..+..||..+.+-..  .+...... .+++ ..+++..+
T Consensus       370 W~~~~~lp~~r~~~~~~-~~~~~----iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~-~~~~~iyv  442 (534)
T PHA03098        370 WREEPPLIFPRYNPCVV-NVNNL----IYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAI-YHDGKIYV  442 (534)
T ss_pred             eeeCCCcCcCCccceEE-EECCE----EEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEE-EECCEEEE
Confidence            33211111111111121 12222    3332211111    468889987643222  11111111 1222 23466666


Q ss_pred             EEeCC--------CcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECC-----CcEEEEEecCC
Q 015490          317 VGTAS--------GDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMD-----SSVRVTVIEDK  375 (406)
Q Consensus       317 ~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d-----g~i~iw~~~~~  375 (406)
                      .|+.+        ..+.+||..+.+-...-.......-.+++ .-+++.++.|+.+     +.|.+||..+.
T Consensus       443 ~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        443 IGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLC-IFNNKIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             ECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEE-EECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence            66542        23888998765433221101111111122 1266777777654     46888887764

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.26  E-value=1.5  Score=44.14  Aligned_cols=156  Identities=17%  Similarity=0.201  Sum_probs=91.8

Q ss_pred             CCEEEEeeCCCeEEEEeCCCcceEeeeeccCCce-------------eEEEEcc--CCCEEEEEeC----------CCCE
Q 015490          179 GTIFAAGSENGNLRVFKWPSLEIILNESEAHASV-------------KDLSFSP--DGKFLVSLGN----------RGPG  233 (406)
Q Consensus       179 g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i-------------~~~~~s~--~~~~l~s~s~----------d~~i  233 (406)
                      +..++.++.|+.+.-.|.++|+....+.. .+.|             ..+.-.|  .+..+++++.          +|.|
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I  338 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI  338 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence            45788888999999999999998865422 1111             0111112  1335555642          5789


Q ss_pred             EEEEcCCCeeeeecccCC---------c--------ceEEEEEEEcCCCCceEEEEEEE---------------cCCCcE
Q 015490          234 RVWDLASSAVATPLAKEN---------D--------ELFASCRFSPLNNEDYVLYIAAI---------------TDRGAS  281 (406)
Q Consensus       234 ~iwd~~~~~~~~~~~~~~---------~--------~~~~~~~~~~~~~~~~~l~~~~~---------------~~~~~~  281 (406)
                      +-+|.++|+..-.+....         +        ..-..+++.+...   ++|+-..               ....+.
T Consensus       339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~g---lvy~ptGn~~pd~~g~~r~~~~n~y~~s  415 (764)
T TIGR03074       339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLG---LVYLPMGNQTPDQWGGDRTPADEKYSSS  415 (764)
T ss_pred             EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCC---eEEEeCCCccccccCCccccCcccccce
Confidence            999999998876543210         0        0001233333332   1222110               112466


Q ss_pred             EEEEeCCCceEEEEeeecCCCeE---------EEEEcC-CCC---EEEEEeCCCcEEEEECCCceEEEEe
Q 015490          282 IVTWNTTTWKRIRTKQVVREPVS---------SFNVSA-DGK---LLAVGTASGDISIIDSSSLQVRTAV  338 (406)
Q Consensus       282 i~~~d~~~~~~~~~~~~~~~~i~---------~~~~sp-~~~---~l~~~~~dg~i~i~d~~~~~~~~~~  338 (406)
                      |.-.|.++++..-.++...+.+.         -+.+.. +|+   .++.++.+|.++++|.++++.+...
T Consensus       416 lvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~  485 (764)
T TIGR03074       416 LVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV  485 (764)
T ss_pred             EEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence            77889999988776654222111         122322 553   7889999999999999999887654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.20  E-value=0.15  Score=46.87  Aligned_cols=89  Identities=15%  Similarity=0.218  Sum_probs=66.0

Q ss_pred             ceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCC------------CceEEEEEEEcCC
Q 015490          211 SVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNN------------EDYVLYIAAITDR  278 (406)
Q Consensus       211 ~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~l~~~~~~~~  278 (406)
                      .+.+++.+|++++.++...-|.|.++|+.++..++.+++-.+..+.-+.......            ....++++.....
T Consensus       309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr  388 (415)
T PF14655_consen  309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR  388 (415)
T ss_pred             eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence            5788999999998888877899999999999988888876555433232222211            1235667777788


Q ss_pred             CcEEEEEeCCCceEEEEeeec
Q 015490          279 GASIVTWNTTTWKRIRTKQVV  299 (406)
Q Consensus       279 ~~~i~~~d~~~~~~~~~~~~~  299 (406)
                      .|.|-+|.++++..+..+...
T Consensus       389 Rg~lEvW~~~~g~Rv~a~~v~  409 (415)
T PF14655_consen  389 RGILEVWSMRQGPRVAAFNVG  409 (415)
T ss_pred             CCeEEEEecCCCCEEEEEEeC
Confidence            999999999998887776654

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.13  E-value=0.072  Score=53.54  Aligned_cols=143  Identities=17%  Similarity=0.157  Sum_probs=87.3

Q ss_pred             ceeEEEEccCCCEEEEE--eCCCCEEEEEcCCCeeee-----ecc-----cCCcceEEEEEEEcCCCCceEEEEEEEcCC
Q 015490          211 SVKDLSFSPDGKFLVSL--GNRGPGRVWDLASSAVAT-----PLA-----KENDELFASCRFSPLNNEDYVLYIAAITDR  278 (406)
Q Consensus       211 ~i~~~~~s~~~~~l~s~--s~d~~i~iwd~~~~~~~~-----~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  278 (406)
                      .|..+...+|+...++.  +.+-.|..||+++-....     .+.     ........++.|+|.-..     ..+....
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~-----n~av~l~  176 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPL-----NSAVDLS  176 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccc-----hhhhhcc
Confidence            56667777787654443  344478899987532211     111     112223457788886553     3344456


Q ss_pred             CcEEEEEeCCCceE-EEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeec---ccccceEEEEEcCC
Q 015490          279 GASIVTWNTTTWKR-IRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKK---AHLGIVTALAFSYD  354 (406)
Q Consensus       279 ~~~i~~~d~~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~sp~  354 (406)
                      |+.|++.-+..... +..+. .....++++|+|.|+.+++|-..|++.-|-.. ++....+..   .....|.+++|-..
T Consensus       177 dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t  254 (1405)
T KOG3630|consen  177 DLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLST  254 (1405)
T ss_pred             ccchhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecc
Confidence            77777776653322 22222 23567999999999999999999999888653 343333321   12467899999876


Q ss_pred             CCeEEE
Q 015490          355 SRALVS  360 (406)
Q Consensus       355 ~~~l~s  360 (406)
                      -.++++
T Consensus       255 ~eflvv  260 (1405)
T KOG3630|consen  255 QEFLVV  260 (1405)
T ss_pred             eeEEEE
Confidence            666654

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.12  E-value=1.3  Score=43.12  Aligned_cols=191  Identities=15%  Similarity=0.183  Sum_probs=95.9

Q ss_pred             EEEECCCCCEEEEeeCC------CeEEEEeCCCcceEeeeeccCCceeEEEE-ccCCCEEEEEeCCC-----CEEEEEcC
Q 015490          172 ALTFDSEGTIFAAGSEN------GNLRVFKWPSLEIILNESEAHASVKDLSF-SPDGKFLVSLGNRG-----PGRVWDLA  239 (406)
Q Consensus       172 ~~~~s~~g~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~-s~~~~~l~s~s~d~-----~i~iwd~~  239 (406)
                      +++.. ++...++|+.|      .++..||..+.+-.. ...-...-..... .-+|...++|+.||     ++..||..
T Consensus       327 ~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~  404 (571)
T KOG4441|consen  327 GVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPV  404 (571)
T ss_pred             cEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCccccceeEEECCEEEEEeccccccccccEEEecCC
Confidence            33443 45788889888      357788887766332 2211111111111 12677888888876     47778887


Q ss_pred             CCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCC------cEEEEEeCCCceE--EEEeeecCCCeEEEEEcCC
Q 015490          240 SSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRG------ASIVTWNTTTWKR--IRTKQVVREPVSSFNVSAD  311 (406)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~i~~~d~~~~~~--~~~~~~~~~~i~~~~~sp~  311 (406)
                      +.+-...-....  .........-+..   +|  +.|+.+      ..+..||..+.+-  +..+........ ++ .-+
T Consensus       405 ~~~W~~va~m~~--~r~~~gv~~~~g~---iY--i~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~  475 (571)
T KOG4441|consen  405 TNKWTPVAPMLT--RRSGHGVAVLGGK---LY--IIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLN  475 (571)
T ss_pred             CCcccccCCCCc--ceeeeEEEEECCE---EE--EEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EE-EEC
Confidence            654332221111  1122222222222   33  333322      4577888876543  222222222222 22 225


Q ss_pred             CCEEEEEeCCCc-----EEEEECCCceEEEEeec-ccccceEEEEEcCCCCeEEEEECCC-----cEEEEEecCC
Q 015490          312 GKLLAVGTASGD-----ISIIDSSSLQVRTAVKK-AHLGIVTALAFSYDSRALVSASMDS-----SVRVTVIEDK  375 (406)
Q Consensus       312 ~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~s~s~dg-----~i~iw~~~~~  375 (406)
                      +...++|+.|+.     |..||..+.+-...-.- .....+....+  +++..+.|+.||     +|..||..+.
T Consensus       476 ~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d  548 (571)
T KOG4441|consen  476 GKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETD  548 (571)
T ss_pred             CEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCC
Confidence            677778887763     77888876554333210 12222222222  467778888876     4666655543

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.09  E-value=1  Score=40.62  Aligned_cols=68  Identities=18%  Similarity=0.108  Sum_probs=42.1

Q ss_pred             CCeEEEEEcC-------CCCEEEEEeCCCcEEEEECCCceEEE---EeecccccceEEEEEcCCCCeEEEEECCCcEE
Q 015490          301 EPVSSFNVSA-------DGKLLAVGTASGDISIIDSSSLQVRT---AVKKAHLGIVTALAFSYDSRALVSASMDSSVR  368 (406)
Q Consensus       301 ~~i~~~~~sp-------~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~  368 (406)
                      ..+..+.|..       .|.++++.-..+.|....+.....+.   .+.......+..+++.|||.++++-..+|.|+
T Consensus       253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            4556666653       34566665556778888876443322   22223444789999999999888888888874

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.09  E-value=0.31  Score=44.34  Aligned_cols=136  Identities=7%  Similarity=0.102  Sum_probs=81.7

Q ss_pred             EEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCC
Q 015490          118 RMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWP  197 (406)
Q Consensus       118 ~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~  197 (406)
                      .+-|...++.+++..++...=|.........          ..-......++|.++.||+|.+.+|+--.+.+|.+++..
T Consensus        27 gvFfDDaNkqlfavrSggatgvvvkgpndDV----------piSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~   96 (657)
T KOG2377|consen   27 GVFFDDANKQLFAVRSGGATGVVVKGPNDDV----------PISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFI   96 (657)
T ss_pred             ceeeccCcceEEEEecCCeeEEEEeCCCCCC----------CceeeecCCCceeEEEeccCcceEEEEecCceEEEEecC
Confidence            4445555566666666666666555432111          111122345799999999999999999999999999984


Q ss_pred             CcceEeee----eccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCC
Q 015490          198 SLEIILNE----SEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNN  265 (406)
Q Consensus       198 ~~~~~~~~----~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (406)
                      ..+.....    ......|....|+.+ .-+|..+.. .+.+|.+...+...++...+...+.-..|.++.+
T Consensus        97 ~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~-G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~  166 (657)
T KOG2377|consen   97 PDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQ-GIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETA  166 (657)
T ss_pred             CCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecC-CeEEEEEchhhhhhhhhhhcccCccEEEEccccc
Confidence            33322211    112225899999865 556666644 4677766544333222223344456667777766

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.01  E-value=1  Score=39.77  Aligned_cols=153  Identities=18%  Similarity=0.245  Sum_probs=79.0

Q ss_pred             ccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEe
Q 015490          207 EAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWN  286 (406)
Q Consensus       207 ~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d  286 (406)
                      .....+..+.-++||+++++++......-||--... -..........+..+.|.|++.    +++++   ..+.|++=+
T Consensus       142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~-w~~~~r~~~~riq~~gf~~~~~----lw~~~---~Gg~~~~s~  213 (302)
T PF14870_consen  142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT-WQPHNRNSSRRIQSMGFSPDGN----LWMLA---RGGQIQFSD  213 (302)
T ss_dssp             S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE--SSS-EEEEEE-TTS-----EEEEE---TTTEEEEEE
T ss_pred             CCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc-ceEEccCccceehhceecCCCC----EEEEe---CCcEEEEcc
Confidence            334578889999999988888766556677754321 1111222345688999999976    23332   678888877


Q ss_pred             -CCCceEEEE----eeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeec--ccccceEEEEEcCCCCeEE
Q 015490          287 -TTTWKRIRT----KQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKK--AHLGIVTALAFSYDSRALV  359 (406)
Q Consensus       287 -~~~~~~~~~----~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~  359 (406)
                       ....+....    .......+..++|.+++...++|+ .|. .+...+.++.=.....  .-...+..+.|.++.+-++
T Consensus       214 ~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~-l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~  291 (302)
T PF14870_consen  214 DPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGT-LLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV  291 (302)
T ss_dssp             -TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT--EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE
T ss_pred             CCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-Ccc-EEEeCCCCccceECccccCCCCceEEEEEcCCCceEE
Confidence             222222222    111223478999999988777665 443 3456666654444322  2234578888876655555


Q ss_pred             EEECCCcEEEE
Q 015490          360 SASMDSSVRVT  370 (406)
Q Consensus       360 s~s~dg~i~iw  370 (406)
                       .+.+|.|.-|
T Consensus       292 -lG~~G~ll~~  301 (302)
T PF14870_consen  292 -LGQDGVLLRY  301 (302)
T ss_dssp             -E-STTEEEEE
T ss_pred             -ECCCcEEEEe
Confidence             4578877655

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.75  E-value=1.2  Score=40.99  Aligned_cols=144  Identities=15%  Similarity=0.147  Sum_probs=78.7

Q ss_pred             CcEEEEEECCCCCEEEEee-----------CCC-eEEEEeCCC--cc--eEeeeeccCCceeEEEEccCCCEEEEEeCCC
Q 015490          168 GQQLALTFDSEGTIFAAGS-----------ENG-NLRVFKWPS--LE--IILNESEAHASVKDLSFSPDGKFLVSLGNRG  231 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~~-----------~dg-~i~vwd~~~--~~--~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~  231 (406)
                      .....++|.++|+++++-.           ..+ .|.+++-.+  ++  ....+...-.....+++.+++  |++++.. 
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~-   90 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP-   90 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC-
Confidence            3456889999999877642           223 677776432  32  222333333356889999988  4444444 


Q ss_pred             CEEEE-EcCCC-----e--ee-eecccC---CcceEEEEEEEcCCCCceEEEEEEEcC-----------------CCcEE
Q 015490          232 PGRVW-DLASS-----A--VA-TPLAKE---NDELFASCRFSPLNNEDYVLYIAAITD-----------------RGASI  282 (406)
Q Consensus       232 ~i~iw-d~~~~-----~--~~-~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------~~~~i  282 (406)
                      .|..+ |....     +  .+ ..+...   .......+.|.|++.    +|+.....                 ..+.|
T Consensus        91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~----LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i  166 (367)
T TIGR02604        91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW----LYFNHGNTLASKVTRPGTSDESRQGLGGGL  166 (367)
T ss_pred             eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC----EEEecccCCCceeccCCCccCcccccCceE
Confidence            34434 44211     1  11 122221   123366789999986    33322211                 11456


Q ss_pred             EEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEe
Q 015490          283 VTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGT  319 (406)
Q Consensus       283 ~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~  319 (406)
                      .-+|..+++....-.+. .....++|+|+|+++++-.
T Consensus       167 ~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       167 FRYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             EEEecCCCeEEEEecCc-CCCccceECCCCCEEEEcc
Confidence            67777665432222222 3357899999998877644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.63  E-value=0.97  Score=36.80  Aligned_cols=173  Identities=19%  Similarity=0.242  Sum_probs=91.5

Q ss_pred             CCCEEEEeeC--CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEE-eCCCCEEEEEcCCCeeeeecccCCcce
Q 015490          178 EGTIFAAGSE--NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSL-GNRGPGRVWDLASSAVATPLAKENDEL  254 (406)
Q Consensus       178 ~g~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~~~~~~  254 (406)
                      +|.++.+.+.  ...|++||+.+++.+....-....+..=-...-+.++..- -.+|....+|.++-+++..+.-.....
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW  134 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW  134 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence            4556655544  3479999999998776554332222221111123333332 347788889998887777665433321


Q ss_pred             EEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeec--CCC---eEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 015490          255 FASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVV--REP---VSSFNVSADGKLLAVGTASGDISIIDS  329 (406)
Q Consensus       255 ~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~---i~~~~~sp~~~~l~~~~~dg~i~i~d~  329 (406)
                          ....++..      +..++....++.-|..+.....+....  ..+   +..+.|- ||...|-.-.+..|...+.
T Consensus       135 ----gLt~d~~~------LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p  203 (262)
T COG3823         135 ----GLTSDDKN------LIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDP  203 (262)
T ss_pred             ----eeecCCcc------eEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcC
Confidence                22334443      223345566777777665444333221  111   2222332 4444443334445555566


Q ss_pred             CCceEEEEee-----------cccccceEEEEEcCCC-CeEEEE
Q 015490          330 SSLQVRTAVK-----------KAHLGIVTALAFSYDS-RALVSA  361 (406)
Q Consensus       330 ~~~~~~~~~~-----------~~~~~~v~~~~~sp~~-~~l~s~  361 (406)
                      ++|+.+..+.           ..|..-.+.+++.|++ ++++||
T Consensus       204 ~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         204 DSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             CCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            6666554432           2344567799999986 666666

>PRK13684 Ycf48-like protein; Provisional

Probab=95.59  E-value=1.4  Score=39.88  Aligned_cols=150  Identities=15%  Similarity=0.122  Sum_probs=80.8

Q ss_pred             CcEEEEEECCCCCEEEEeeCCCeEEEE-eCCCcceEeeee-ccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeee
Q 015490          168 GQQLALTFDSEGTIFAAGSENGNLRVF-KWPSLEIILNES-EAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT  245 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~~~dg~i~vw-d~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~  245 (406)
                      ..+.++.+.+++.+++++. .|.+..- + ..++.-.... .....++++.+.++++.++++ ..|.+++=....+..-.
T Consensus       173 g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~  249 (334)
T PRK13684        173 GVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWS  249 (334)
T ss_pred             ceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccc
Confidence            4678899999987776654 4554432 2 2222222222 223478999999998876654 45655432233443322


Q ss_pred             ecccC---CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEee---ecCCCeEEEEEcCCCCEEEEEe
Q 015490          246 PLAKE---NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQ---VVREPVSSFNVSADGKLLAVGT  319 (406)
Q Consensus       246 ~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~---~~~~~i~~~~~sp~~~~l~~~~  319 (406)
                      ....+   ....+..+.+.+++.      +.+. +.+|.+.. ....++.-....   .-......+.|..+++.+++ +
T Consensus       250 ~~~~~~~~~~~~l~~v~~~~~~~------~~~~-G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G  320 (334)
T PRK13684        250 KPIIPEITNGYGYLDLAYRTPGE------IWAG-GGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-G  320 (334)
T ss_pred             cccCCccccccceeeEEEcCCCC------EEEE-cCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-C
Confidence            22211   223466788888665      2233 33454442 333333222221   12235777888777766665 4


Q ss_pred             CCCcEEEEEC
Q 015490          320 ASGDISIIDS  329 (406)
Q Consensus       320 ~dg~i~i~d~  329 (406)
                      ..|.|..++-
T Consensus       321 ~~G~il~~~~  330 (334)
T PRK13684        321 QRGVLLRYVG  330 (334)
T ss_pred             CCceEEEecC
Confidence            5788777653

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=95.52  E-value=1.5  Score=38.25  Aligned_cols=205  Identities=12%  Similarity=0.141  Sum_probs=109.0

Q ss_pred             ceEEEEccCCCeEEEEecCCeEEEEEecccccceee-cceeccceeeecccccCcEEEEE--ECCCC-CEEEEeeCCCeE
Q 015490          116 PYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRR-LGVKISEKVLSQLENVGQQLALT--FDSEG-TIFAAGSENGNL  191 (406)
Q Consensus       116 v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~--~s~~g-~~l~~~~~dg~i  191 (406)
                      |..+...|+-+.+++-+|+.+.++.++.-....... ............+.....+...+  -...+ ..|+++. ...|
T Consensus        38 I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i  116 (275)
T PF00780_consen   38 ITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKI  116 (275)
T ss_pred             EEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEE
Confidence            999999999888888888888888776543322111 00000000011122223444444  11233 4555544 4589


Q ss_pred             EEEeCCCc-----ceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCc-----------ceE
Q 015490          192 RVFKWPSL-----EIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKEND-----------ELF  255 (406)
Q Consensus       192 ~vwd~~~~-----~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~-----------~~~  255 (406)
                      .+|.+...     +....+ .-...+.+++|.  ++.++.+..+ ...+.|+.++.....+.....           .++
T Consensus       117 ~i~~~~~~~~~f~~~~ke~-~lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~  192 (275)
T PF00780_consen  117 LIYEWNDPRNSFSKLLKEI-SLPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPL  192 (275)
T ss_pred             EEEEEECCcccccceeEEE-EcCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCce
Confidence            99988653     233333 233578999998  5567777755 588899987665443322111           112


Q ss_pred             EEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEE--EeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCce
Q 015490          256 ASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIR--TKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQ  333 (406)
Q Consensus       256 ~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~--~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~  333 (406)
                      ..+.. +++.     ++++.   +..-.+.|.. |+..+  .+.-. ....++++.  ..||++.+. +.|.||++.+++
T Consensus       193 ~~~~~-~~~e-----~Ll~~---~~~g~fv~~~-G~~~r~~~i~W~-~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~  258 (275)
T PF00780_consen  193 GIFQL-SDNE-----FLLCY---DNIGVFVNKN-GEPSRKSTIQWS-SAPQSVAYS--SPYLIAFSS-NSIEVRSLETGE  258 (275)
T ss_pred             EEEEe-CCce-----EEEEe---cceEEEEcCC-CCcCcccEEEcC-CchhEEEEE--CCEEEEECC-CEEEEEECcCCc
Confidence            11222 2222     12221   2333333433 22222  22222 344566654  347776655 559999999999


Q ss_pred             EEEEee
Q 015490          334 VRTAVK  339 (406)
Q Consensus       334 ~~~~~~  339 (406)
                      .++.+.
T Consensus       259 lvQ~i~  264 (275)
T PF00780_consen  259 LVQTIP  264 (275)
T ss_pred             EEEEEE
Confidence            888875

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.51  E-value=1  Score=41.81  Aligned_cols=144  Identities=10%  Similarity=0.073  Sum_probs=79.2

Q ss_pred             ccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCC--------CEEEEeeCCCeEEE
Q 015490          122 HPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEG--------TIFAAGSENGNLRV  193 (406)
Q Consensus       122 sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--------~~l~~~~~dg~i~v  193 (406)
                      ..+...++..+...-++|.+|...++.+...            ..+..+ -+.|.|+.        +.| +|-.+..|.-
T Consensus       476 ~~dssli~~dg~~~~kLykmDIErGkvveeW------------~~~ddv-vVqy~p~~kf~qmt~eqtl-vGlS~~svFr  541 (776)
T COG5167         476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEW------------DLKDDV-VVQYNPYFKFQQMTDEQTL-VGLSDYSVFR  541 (776)
T ss_pred             cCCcceEEecCCCcccceeeecccceeeeEe------------ecCCcc-eeecCCchhHHhcCccceE-EeecccceEE
Confidence            3445555555555558888888755544433            334444 56666643        233 3444444544


Q ss_pred             EeCCC-cceEeeeeccCCceeEEEEc----cCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCce
Q 015490          194 FKWPS-LEIILNESEAHASVKDLSFS----PDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDY  268 (406)
Q Consensus       194 wd~~~-~~~~~~~~~~~~~i~~~~~s----~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (406)
                      .|.+- |..+. ......-++.-.|+    ....+++.+|..|-|++||--.-+ ..+.....+..|..+..+.+|..  
T Consensus       542 IDPR~~gNKi~-v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~r-AKtalP~lG~aIk~idvta~Gk~--  617 (776)
T COG5167         542 IDPRARGNKIK-VVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKR-AKTALPGLGDAIKHIDVTANGKH--  617 (776)
T ss_pred             ecccccCCcee-eeeehhccccccccccccccCceEEEecCCCceeeehhhcch-hhhcCcccccceeeeEeecCCcE--
Confidence            45432 22221 11111112222222    234589999999999999964333 33333344556788999999985  


Q ss_pred             EEEEEEEcCCCcEEEEEeCC
Q 015490          269 VLYIAAITDRGASIVTWNTT  288 (406)
Q Consensus       269 ~l~~~~~~~~~~~i~~~d~~  288 (406)
                         +++++  ...+.+.|++
T Consensus       618 ---ilaTC--k~yllL~d~~  632 (776)
T COG5167         618 ---ILATC--KNYLLLTDVP  632 (776)
T ss_pred             ---EEEee--cceEEEEecc
Confidence               55554  4567777764

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=95.49  E-value=2.1  Score=39.66  Aligned_cols=288  Identities=12%  Similarity=0.089  Sum_probs=143.4

Q ss_pred             CCCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEcc-----CCCeEEEEecCCeEEEE
Q 015490           66 IRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHP-----HGDGIICALQNSCRLFE  140 (406)
Q Consensus        66 ~~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-----~~~~l~~~~~~~~~i~~  140 (406)
                      +.....++++.-.|          .+..+++..+......+.--..-..+|..++.-.     +...|++-.-+.+.||.
T Consensus        34 ~~~~d~IivGS~~G----------~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~  103 (418)
T PF14727_consen   34 PSGSDKIIVGSYSG----------ILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYS  103 (418)
T ss_pred             CCCccEEEEecccc----------EEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEE
Confidence            33455666653333          3445555544433333333333456777776543     23355555688888888


Q ss_pred             Eecccccceeecceeccceeeeccccc--CcEEEEEECC----C-CCEEEEeeCCCeEEEEeCCCcceEeeeeccCCcee
Q 015490          141 WDEVENTEIRRLGVKISEKVLSQLENV--GQQLALTFDS----E-GTIFAAGSENGNLRVFKWPSLEIILNESEAHASVK  213 (406)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~----~-g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~  213 (406)
                      +....+.....-    ..+....++|+  .....++.-|    . ..++++-+.||.+.+|+-+.......+.. .--..
T Consensus       104 v~~~~g~~~~g~----~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPg  178 (418)
T PF14727_consen  104 VSLVDGTVEHGN----QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPG  178 (418)
T ss_pred             EEecCCCcccCc----EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCc
Confidence            855443311100    01111112222  2223333322    2 36788889999999999655443333322 22345


Q ss_pred             EEEEccCCCEEEEEeCCCCEEEEEcCCCee-----------------eeec----ccCCcceEEEEEEEcCCCCceEEEE
Q 015490          214 DLSFSPDGKFLVSLGNRGPGRVWDLASSAV-----------------ATPL----AKENDELFASCRFSPLNNEDYVLYI  272 (406)
Q Consensus       214 ~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~-----------------~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~  272 (406)
                      .+.+.+.-..|++++.+..+.-|....-..                 .+.+    ...-+..+..+..-........  +
T Consensus       179 Pl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~--I  256 (418)
T PF14727_consen  179 PLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESD--I  256 (418)
T ss_pred             CeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCce--E
Confidence            678888888899999888888886521100                 0000    0011222223332222111011  2


Q ss_pred             EEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEE-Ec----CCC---CEEEEEeCCCcEEEEECCCceEEEEeeccccc
Q 015490          273 AAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFN-VS----ADG---KLLAVGTASGDISIIDSSSLQVRTAVKKAHLG  344 (406)
Q Consensus       273 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~-~s----p~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  344 (406)
                      ++.+  ...+.+.+.. |......+. +....+++ |.    .++   ..+++++.++.+.||.=.+  .+-... ....
T Consensus       257 vvLg--er~Lf~l~~~-G~l~~~krL-d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~--L~WsA~-l~~~  329 (418)
T PF14727_consen  257 VVLG--ERSLFCLKDN-GSLRFQKRL-DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT--LVWSAQ-LPHV  329 (418)
T ss_pred             EEEe--cceEEEEcCC-CeEEEEEec-CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe--EEEecC-CCCC
Confidence            2221  4566666653 344333333 22222222 21    122   2588889999999997433  333322 1122


Q ss_pred             ce--EEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490          345 IV--TALAFSYDSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       345 ~v--~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      +|  .-..|..-...+++-+.+|.+.+--+.|.-.
T Consensus       330 PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs  364 (418)
T PF14727_consen  330 PVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPS  364 (418)
T ss_pred             CEEEEecccCCCCceEEEEcCCCcEEEEEeCCCCc
Confidence            22  2222333345788889999999988876543

>PHA03098 kelch-like protein; Provisional

Probab=95.24  E-value=1.6  Score=42.47  Aligned_cols=147  Identities=12%  Similarity=0.056  Sum_probs=69.2

Q ss_pred             CCCEEEEeeCC-----CeEEEEeCCCcceEee--eeccCCceeEEEEccCCCEEEEEeCC------CCEEEEEcCCCeee
Q 015490          178 EGTIFAAGSEN-----GNLRVFKWPSLEIILN--ESEAHASVKDLSFSPDGKFLVSLGNR------GPGRVWDLASSAVA  244 (406)
Q Consensus       178 ~g~~l~~~~~d-----g~i~vwd~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~s~s~d------~~i~iwd~~~~~~~  244 (406)
                      ++++++.|+.+     ..+..||..+.+-...  +...... .+++ .-+++..+.|+.+      ..+..||..+.+-.
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~  419 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWS  419 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence            67777888765     3577888776543321  1111111 1122 2356666666632      35788998776543


Q ss_pred             eecccCCcceEEEEEEEcCCCCceEEEEEEEcCC------CcEEEEEeCCCceEE--EEeeecCCCeEEEEEcCCCCEEE
Q 015490          245 TPLAKENDELFASCRFSPLNNEDYVLYIAAITDR------GASIVTWNTTTWKRI--RTKQVVREPVSSFNVSADGKLLA  316 (406)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~i~~~d~~~~~~~--~~~~~~~~~i~~~~~sp~~~~l~  316 (406)
                      ..-.......-.++ ...++.    +|++.....      -..+..||..+.+-.  ..+.........+.+  +++.++
T Consensus       420 ~~~~~p~~r~~~~~-~~~~~~----iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv  492 (534)
T PHA03098        420 KGSPLPISHYGGCA-IYHDGK----IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYV  492 (534)
T ss_pred             ecCCCCccccCceE-EEECCE----EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEE
Confidence            32111111111112 222222    333321111      124888998765422  211111111122222  567777


Q ss_pred             EEeCC-----CcEEEEECCCce
Q 015490          317 VGTAS-----GDISIIDSSSLQ  333 (406)
Q Consensus       317 ~~~~d-----g~i~i~d~~~~~  333 (406)
                      .|+.+     +.+.+||..+.+
T Consensus       493 ~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        493 VGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             EcCCcCCcccceeEEEeCCCCE
Confidence            77654     468888877654

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.23  E-value=0.42  Score=47.51  Aligned_cols=75  Identities=17%  Similarity=0.237  Sum_probs=53.4

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCC----------ce--EEE-Ee-------ecccccceEEEEEcCC---CCe
Q 015490          301 EPVSSFNVSADGKLLAVGTASGDISIIDSSS----------LQ--VRT-AV-------KKAHLGIVTALAFSYD---SRA  357 (406)
Q Consensus       301 ~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~----------~~--~~~-~~-------~~~~~~~v~~~~~sp~---~~~  357 (406)
                      ..|..+.++|+|++++..+..| |.|..+..          ++  ... ++       ...+...|..+.|+|.   +.+
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            4688899999999999988766 44444421          11  111 11       1234457889999996   588


Q ss_pred             EEEEECCCcEEEEEecCCc
Q 015490          358 LVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       358 l~s~s~dg~i~iw~~~~~~  376 (406)
                      |+.-+.|+++|+||+...+
T Consensus       164 l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             EEEEecCCEEEEEecCCCC
Confidence            9999999999999997644

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PHA02790 Kelch-like protein; Provisional

Probab=95.23  E-value=2.4  Score=40.50  Aligned_cols=185  Identities=11%  Similarity=-0.019  Sum_probs=83.7

Q ss_pred             CCCEEEEeeCCC-----eEEEEeCCCcceEee--eeccCCceeEEEEccCCCEEEEEeCC--CCEEEEEcCCCeeeeecc
Q 015490          178 EGTIFAAGSENG-----NLRVFKWPSLEIILN--ESEAHASVKDLSFSPDGKFLVSLGNR--GPGRVWDLASSAVATPLA  248 (406)
Q Consensus       178 ~g~~l~~~~~dg-----~i~vwd~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~s~s~d--~~i~iwd~~~~~~~~~~~  248 (406)
                      ++.++++|+.++     ++..||..++.....  ........ +++ .-++...+.|+.+  ..+..||..+++-...-.
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~  348 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS  348 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence            456667776542     577788776553321  11111111 222 2356666677653  357888876654322111


Q ss_pred             cCCcceEEEEEEEcCCCCceEEEEEEEcC-CCcEEEEEeCCCceEEEE--eeecCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 015490          249 KENDELFASCRFSPLNNEDYVLYIAAITD-RGASIVTWNTTTWKRIRT--KQVVREPVSSFNVSADGKLLAVGTASGDIS  325 (406)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~i~~~d~~~~~~~~~--~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~  325 (406)
                      .... ........-++.    +|++.... ....+..||.++.+-...  ..........+  .-+++..+.|   |.+.
T Consensus       349 l~~~-r~~~~~~~~~g~----IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~--~~~~~IYv~G---G~~e  418 (480)
T PHA02790        349 LLKP-RCNPAVASINNV----IYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL--VFGRRLFLVG---RNAE  418 (480)
T ss_pred             CCCC-CcccEEEEECCE----EEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE--EECCEEEEEC---CceE
Confidence            1111 111111122332    33332211 124567788776432221  11111111122  2346555665   3577


Q ss_pred             EEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECC-----CcEEEEEecCC
Q 015490          326 IIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMD-----SSVRVTVIEDK  375 (406)
Q Consensus       326 i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d-----g~i~iw~~~~~  375 (406)
                      +||..+.+-...-...+...-.+++. -+|+..+.|+.+     ..+..||..+.
T Consensus       419 ~ydp~~~~W~~~~~m~~~r~~~~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        419 FYCESSNTWTLIDDPIYPRDNPELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             EecCCCCcEeEcCCCCCCccccEEEE-ECCEEEEECCcCCCcccceEEEEECCCC
Confidence            88887654332211011111112222 267777788754     35777777654

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=95.22  E-value=3.3  Score=40.38  Aligned_cols=245  Identities=13%  Similarity=0.136  Sum_probs=125.6

Q ss_pred             EEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCC---CCEEEEeeCC-CeEEE
Q 015490          119 MAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSE---GTIFAAGSEN-GNLRV  193 (406)
Q Consensus       119 ~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~~~~d-g~i~v  193 (406)
                      ..++|+...+-.|- ...+.-|.+.. +.+.++.+.+          .....|.||..-..   .+..++|-.+ ..-++
T Consensus        33 ~~~s~~sn~IdiGIS~S~ISsYIi~P-TPKLiwsypi----------~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~l  101 (670)
T PF10395_consen   33 DDFSPDSNQIDIGISGSAISSYIIKP-TPKLIWSYPI----------SPTTIVECCDVLEKSDGKKLYCVGLTERKKFKL  101 (670)
T ss_pred             cccCCCCceEEEEeccchhhheecCC-CcceeEeecc----------CcCceEEEEEeEecCCCcEEEEEEEeeCCeeEE
Confidence            36777887777764 33344444332 2222222222          22345666665432   2455555333 33343


Q ss_pred             EeCCCc-----------c--eEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCe--eeeecccCCcc-eEEE
Q 015490          194 FKWPSL-----------E--IILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSA--VATPLAKENDE-LFAS  257 (406)
Q Consensus       194 wd~~~~-----------~--~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~~~~~-~~~~  257 (406)
                      ..+..+           +  ....+ .-...|-++.+.++++.+++.-.+|.|.+||...+.  .+..+...+.. .+.+
T Consensus       102 l~i~~~~~~~~~~~~~~e~~~~~~~-kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys  180 (670)
T PF10395_consen  102 LLIERKVGSTEDGTVNSETTNEFEL-KLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS  180 (670)
T ss_pred             EEEEccCccccccccCccccceEEE-EcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh
Confidence            333222           1  11111 124578899999999999999999999999993322  21223222222 1222


Q ss_pred             EEEEcCCC---CceEEEEEEE-cCCCcEEEEEeC--CCceEEEEee---ecCCCe--EEEEEcCCCCEEEEEeCCCcEEE
Q 015490          258 CRFSPLNN---EDYVLYIAAI-TDRGASIVTWNT--TTWKRIRTKQ---VVREPV--SSFNVSADGKLLAVGTASGDISI  326 (406)
Q Consensus       258 ~~~~~~~~---~~~~l~~~~~-~~~~~~i~~~d~--~~~~~~~~~~---~~~~~i--~~~~~sp~~~~l~~~~~dg~i~i  326 (406)
                       .|-++..   ....++++.. .+..-..+++.+  .. .....+.   .+....  ..+++. +|++...  .++.|.+
T Consensus       181 -~fv~~~~~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~-~~~~El~s~~~e~~~~~~s~f~Y~-~G~LY~l--~~~~i~~  255 (670)
T PF10395_consen  181 -KFVNDFELENGKDLLLTVSQLSNSKLSYKLISLSNES-SSIFELSSTILENFGLEDSKFCYQ-FGKLYQL--SKKTISS  255 (670)
T ss_pred             -hhhcccccccCCceEEEEEEcCCCcEEEEEEEeccCC-cceEEeehheeccCCcccceEEEe-CCEEEEE--eCCEEEE
Confidence             3333222   1113333333 344566778877  22 2222222   121222  233333 4544333  6789999


Q ss_pred             EECCCceEEEEeeccc---c--cceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCch
Q 015490          327 IDSSSLQVRTAVKKAH---L--GIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLN  382 (406)
Q Consensus       327 ~d~~~~~~~~~~~~~~---~--~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~  382 (406)
                      |++...+...++.-.+   .  ..+.++.--...|.|++  .+++|++.|+.-...++++.
T Consensus       256 ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s~nRvLLs--~~nkIyLld~~~~siLse~~  314 (670)
T PF10395_consen  256 YSIPNFQIQKTISLPSIIDKESDDLVSLKPPSPNRVLLS--VNNKIYLLDLKFESILSEFE  314 (670)
T ss_pred             EEcCCceEEEEEEechhhccccccceEeecCCCCeEEEE--cCCEEEEEeehhhhhhhhhh
Confidence            9999888777664210   1  22334432223455554  46789999998776666655

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.20  E-value=3.2  Score=41.50  Aligned_cols=88  Identities=6%  Similarity=0.076  Sum_probs=56.4

Q ss_pred             CCCceEEEEccCCCeEEEEecCCeEEEEEecccccc--e----eeccee--ccceeeecccccCcEEEEEECCC---CCE
Q 015490          113 SDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTE--I----RRLGVK--ISEKVLSQLENVGQQLALTFDSE---GTI  181 (406)
Q Consensus       113 ~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~--~----~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~---g~~  181 (406)
                      .-.|..+.++|+|++++..+...+.|..+...-+..  .    ..+..+  +-...+........|..+.|+|.   +..
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            346889999999999999888877777664321110  0    001100  00111111223357899999996   478


Q ss_pred             EEEeeCCCeEEEEeCCCcc
Q 015490          182 FAAGSENGNLRVFKWPSLE  200 (406)
Q Consensus       182 l~~~~~dg~i~vwd~~~~~  200 (406)
                      |++-..|+++++||+....
T Consensus       164 l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             EEEEecCCEEEEEecCCCC
Confidence            8888999999999996543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.17  E-value=2.5  Score=38.76  Aligned_cols=141  Identities=14%  Similarity=0.160  Sum_probs=71.2

Q ss_pred             CCceEEEEccCCCeEEEEe----------cCC-eEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEE
Q 015490          114 DLPYRMAIHPHGDGIICAL----------QNS-CRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIF  182 (406)
Q Consensus       114 ~~v~~~~~sp~~~~l~~~~----------~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  182 (406)
                      ..+..|+|.++|+.+++..          ... -+|+.++..++...       ..+.......-.....+++.++| ++
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~-------~d~~~vfa~~l~~p~Gi~~~~~G-ly   85 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGK-------YDKSNVFAEELSMVTGLAVAVGG-VY   85 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCC-------cceeEEeecCCCCccceeEecCC-EE
Confidence            4567899999999777642          111 26666654322100       00000111122445788999988 44


Q ss_pred             EEeeCCCeEEEEeCCCc-----c--eEee-eec----cCCceeEEEEccCCCEEEEEeCC-------------------C
Q 015490          183 AAGSENGNLRVFKWPSL-----E--IILN-ESE----AHASVKDLSFSPDGKFLVSLGNR-------------------G  231 (406)
Q Consensus       183 ~~~~~dg~i~vwd~~~~-----~--~~~~-~~~----~~~~i~~~~~s~~~~~l~s~s~d-------------------~  231 (406)
                      + +......++.|.+..     +  .+.. +..    ++.....++|.|||.+.++.+..                   +
T Consensus        86 V-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g  164 (367)
T TIGR02604        86 V-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGG  164 (367)
T ss_pred             E-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCc
Confidence            4 444433334354211     1  1211 212    12357789999999866654421                   3


Q ss_pred             CEEEEEcCCCeeeeecccCCcceEEEEEEEcCCC
Q 015490          232 PGRVWDLASSAVATPLAKENDELFASCRFSPLNN  265 (406)
Q Consensus       232 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (406)
                      .|.-++..+++. ..+.... .....++|+++++
T Consensus       165 ~i~r~~pdg~~~-e~~a~G~-rnp~Gl~~d~~G~  196 (367)
T TIGR02604       165 GLFRYNPDGGKL-RVVAHGF-QNPYGHSVDSWGD  196 (367)
T ss_pred             eEEEEecCCCeE-EEEecCc-CCCccceECCCCC
Confidence            455555544433 2222222 2234788998876

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.01  E-value=1.6  Score=42.86  Aligned_cols=163  Identities=10%  Similarity=0.087  Sum_probs=93.1

Q ss_pred             CCeEEEEecCCeEEEEEecccccce----eecceeccce-----eeecccccCcEEEEEECC--CCCEEEEeeCCCeEEE
Q 015490          125 GDGIICALQNSCRLFEWDEVENTEI----RRLGVKISEK-----VLSQLENVGQQLALTFDS--EGTIFAAGSENGNLRV  193 (406)
Q Consensus       125 ~~~l~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~~-----~~~~~~~~~~v~~~~~s~--~g~~l~~~~~dg~i~v  193 (406)
                      ..+++++..+.+.||..+.......    ..+...+...     .......+..|+.+....  +...|+.+..||.|.+
T Consensus        49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~  128 (717)
T PF08728_consen   49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA  128 (717)
T ss_pred             CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence            6788888899999998876544221    1111111110     111111223455554443  4478889999999999


Q ss_pred             EeCCC-------c----ce-E-------eeeeccCCceeEEEEc--cCCCEEEEEeCCCCEEEEEcCCC--eeeeecccC
Q 015490          194 FKWPS-------L----EI-I-------LNESEAHASVKDLSFS--PDGKFLVSLGNRGPGRVWDLASS--AVATPLAKE  250 (406)
Q Consensus       194 wd~~~-------~----~~-~-------~~~~~~~~~i~~~~~s--~~~~~l~s~s~d~~i~iwd~~~~--~~~~~~~~~  250 (406)
                      |.+++       .    +. .       .-.......+++++++  ...++||+++....|.||-....  +....-...
T Consensus       129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~  208 (717)
T PF08728_consen  129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQ  208 (717)
T ss_pred             EEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccc
Confidence            97621       1    00 0       0011122367889998  77888888888888888866442  111111112


Q ss_pred             CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeC
Q 015490          251 NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNT  287 (406)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~  287 (406)
                      +...|.+++|-++.....-...++..+-.|.+.+|++
T Consensus       209 ~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  209 HSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             cccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            3445789999887743221123445567788888777

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=94.78  E-value=2  Score=41.84  Aligned_cols=189  Identities=15%  Similarity=0.150  Sum_probs=93.5

Q ss_pred             CCCCCEEEEeeCC------CeEEEEeCCCcceEeeeeccCC-ceeEEEEccCCCEEEEEeCC------CCEEEEEcCCCe
Q 015490          176 DSEGTIFAAGSEN------GNLRVFKWPSLEIILNESEAHA-SVKDLSFSPDGKFLVSLGNR------GPGRVWDLASSA  242 (406)
Q Consensus       176 s~~g~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~s~s~d------~~i~iwd~~~~~  242 (406)
                      +..+.+++.|+.+      ..+..||..++.......-... .-.+++.. ++...++|+.|      .++..||..+.+
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~  360 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ  360 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc
Confidence            3445677788776      3688888877643322211111 23344444 45677788888      357788888776


Q ss_pred             eeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCc-----EEEEEeCCCceE--EEEeeecCCCeEEEEEcCCCCEE
Q 015490          243 VATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGA-----SIVTWNTTTWKR--IRTKQVVREPVSSFNVSADGKLL  315 (406)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~i~~~d~~~~~~--~~~~~~~~~~i~~~~~sp~~~~l  315 (406)
                      -.. +..-.... .......-+..     +.+.|+.+|     .+-.||..+.+-  +..............  -+|+..
T Consensus       361 W~~-~a~M~~~R-~~~~v~~l~g~-----iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--~~g~iY  431 (571)
T KOG4441|consen  361 WTP-VAPMNTKR-SDFGVAVLDGK-----LYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--LGGKLY  431 (571)
T ss_pred             eec-cCCccCcc-ccceeEEECCE-----EEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE--ECCEEE
Confidence            333 21111111 11222222221     345555554     366777765432  221111111112222  257777


Q ss_pred             EEEeCCC------cEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCc-----EEEEEecCC
Q 015490          316 AVGTASG------DISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSS-----VRVTVIEDK  375 (406)
Q Consensus       316 ~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~-----i~iw~~~~~  375 (406)
                      ++|+.++      ++..||..+.+-.....-.-...-..++. -++...+.|+.|+.     |..+|..+.
T Consensus       432 i~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~  501 (571)
T KOG4441|consen  432 IIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETN  501 (571)
T ss_pred             EEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCC
Confidence            7877543      57888887654332221000011111222 25677777877763     556666553

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.41  E-value=0.25  Score=28.88  Aligned_cols=31  Identities=29%  Similarity=0.422  Sum_probs=25.7

Q ss_pred             CCeEEEEEcCCC---CEEEEEeCCCcEEEEECCC
Q 015490          301 EPVSSFNVSADG---KLLAVGTASGDISIIDSSS  331 (406)
Q Consensus       301 ~~i~~~~~sp~~---~~l~~~~~dg~i~i~d~~~  331 (406)
                      +.+.++.|||++   .+|+.+-..|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            358899999854   4888887789999999995

It contains a characteristic DLL sequence motif.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.38  E-value=0.24  Score=28.89  Aligned_cols=31  Identities=19%  Similarity=0.302  Sum_probs=26.0

Q ss_pred             CcEEEEEECCCC---CEEEEeeCCCeEEEEeCCC
Q 015490          168 GQQLALTFDSEG---TIFAAGSENGNLRVFKWPS  198 (406)
Q Consensus       168 ~~v~~~~~s~~g---~~l~~~~~dg~i~vwd~~~  198 (406)
                      +.+.++.|||+.   .+|+.+-..|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            368899999844   5888888889999999985

It contains a characteristic DLL sequence motif.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=94.32  E-value=2  Score=39.36  Aligned_cols=161  Identities=15%  Similarity=0.121  Sum_probs=89.4

Q ss_pred             ceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeee-ecccC-Cc---ceEE-EEEEEcCCCCceEEEEEEEcCCCcEEEE
Q 015490          211 SVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT-PLAKE-ND---ELFA-SCRFSPLNNEDYVLYIAAITDRGASIVT  284 (406)
Q Consensus       211 ~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~~~-~~---~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~i~~  284 (406)
                      .+..+-..|||+.+..-+. ..+.++++.+..... ++... .+   ..++ .+.....+.      .+...+.||.|.-
T Consensus       222 ~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~------SLLv~~~dG~vsQ  294 (733)
T COG4590         222 DVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGF------SLLVVHEDGLVSQ  294 (733)
T ss_pred             chHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCce------eEEEEcCCCceee
Confidence            4556777899998887766 688888886543221 11111 11   0111 011111111      2334466777776


Q ss_pred             E-eCCCc-e----EEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeE
Q 015490          285 W-NTTTW-K----RIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRAL  358 (406)
Q Consensus       285 ~-d~~~~-~----~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  358 (406)
                      | |.+.. .    .++.++....++..+.-..+.+-+++-+..|++.++.....+.+..-  ..-..+.-+++||.+.+|
T Consensus       295 WFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~--~~~~~~~~~~~Sp~~~~L  372 (733)
T COG4590         295 WFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFE--RAYQAPQLVAMSPNQAYL  372 (733)
T ss_pred             eeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehh--hhhcCcceeeeCcccchh
Confidence            6 44332 1    12223333334444433334455667777888887765544433222  123356778999999998


Q ss_pred             EEEECCCcEEEEEecCCcCCCCc
Q 015490          359 VSASMDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       359 ~s~s~dg~i~iw~~~~~~~~~~~  381 (406)
                      ++- ..|.++++.+++...--++
T Consensus       373 l~e-~~gki~~~~l~Nr~Peisw  394 (733)
T COG4590         373 LSE-DQGKIRLAQLENRNPEISW  394 (733)
T ss_pred             eee-cCCceEEEEecCCCCCccH
Confidence            865 4578999999887664443

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=94.15  E-value=7.6  Score=39.62  Aligned_cols=168  Identities=14%  Similarity=0.125  Sum_probs=97.7

Q ss_pred             cCCCCceEEEEc---c----CCCeEEEEecCCeEEEEEecccc-----cceeecceeccceeeeccc----ccCcEEEEE
Q 015490          111 TDSDLPYRMAIH---P----HGDGIICALQNSCRLFEWDEVEN-----TEIRRLGVKISEKVLSQLE----NVGQQLALT  174 (406)
Q Consensus       111 ~h~~~v~~~~~s---p----~~~~l~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~----~~~~v~~~~  174 (406)
                      .-..+|..|.|.   .    ..++|++=....+.|+.-.....     .....+    ...++..+.    +..+...++
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i----~~~~l~~i~~~~tgg~~~aDv~  152 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRI----DPNPLLTISSSDTGGFPHADVA  152 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCcccc----ccceeEEechhhcCCCccceEE
Confidence            456788889888   2    22455555566666655221111     011111    222333333    335678899


Q ss_pred             ECC-CCCEEEEeeCCCeEEEEeCCCcc----eEeee----ec-------cCCceeEEEEccCCCEEEEEeCCCCEEEEEc
Q 015490          175 FDS-EGTIFAAGSENGNLRVFKWPSLE----IILNE----SE-------AHASVKDLSFSPDGKFLVSLGNRGPGRVWDL  238 (406)
Q Consensus       175 ~s~-~g~~l~~~~~dg~i~vwd~~~~~----~~~~~----~~-------~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~  238 (406)
                      |+| +.+.||+....|...||++....    .....    .+       ..+.-..+.|.++-+.|++++.. .+.++|+
T Consensus       153 FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l~~~d~  231 (765)
T PF10214_consen  153 FNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS-KLMLIDF  231 (765)
T ss_pred             eccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-ceEEEEC
Confidence            999 45789999999999999992111    00000    01       11234478898888888888765 7899999


Q ss_pred             CCCeeee-ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC
Q 015490          239 ASSAVAT-PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT  289 (406)
Q Consensus       239 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~  289 (406)
                      ++..... .........+..+.-++....  .+|++.    ...|...|...
T Consensus       232 ~~~~~~~~l~~~~~~~~IlDv~~~~~~~~--~~FiLT----s~eiiw~~~~~  277 (765)
T PF10214_consen  232 ESNWQTEYLVTAKTWSWILDVKRSPDNPS--HVFILT----SKEIIWLDVKS  277 (765)
T ss_pred             CCCCccchhccCCChhheeeEEecCCccc--eEEEEe----cCeEEEEEccC
Confidence            8876644 333334455767777776443  334432    34566666654

These proteins are found in fungi.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=93.69  E-value=2.9  Score=37.76  Aligned_cols=107  Identities=18%  Similarity=0.239  Sum_probs=58.6

Q ss_pred             eeEEEEccCCCEEEEEeCCCCEEEEEcCCCee---eeec---ccCCcceEEEEEEEcCCCCceEEEEEEEcC------CC
Q 015490          212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAV---ATPL---AKENDELFASCRFSPLNNEDYVLYIAAITD------RG  279 (406)
Q Consensus       212 i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~  279 (406)
                      .+.|+|.|||+.++ +...|.|++++ ..+..   +..+   ..........++++|+-..+..+|+..+..      ..
T Consensus         4 P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    4 PRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             EEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             ceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            57899999997665 56699999999 34443   2222   223445578999999744434566655521      12


Q ss_pred             cEEEEEeCCCc-------eEE-EEeee---cCCCeEEEEEcCCCCEEEEEeC
Q 015490          280 ASIVTWNTTTW-------KRI-RTKQV---VREPVSSFNVSADGKLLAVGTA  320 (406)
Q Consensus       280 ~~i~~~d~~~~-------~~~-~~~~~---~~~~i~~~~~sp~~~~l~~~~~  320 (406)
                      ..|.-|.....       +.+ .....   ....-..|.|.|||.+.++.+.
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~  133 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD  133 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence            23443433222       111 12222   2345678999999976655443

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.63  E-value=0.6  Score=39.19  Aligned_cols=67  Identities=12%  Similarity=0.077  Sum_probs=50.4

Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCceEEEEe------ec-------ccccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490          308 VSADGKLLAVGTASGDISIIDSSSLQVRTAV------KK-------AHLGIVTALAFSYDSRALVSASMDSSVRVTVIED  374 (406)
Q Consensus       308 ~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~------~~-------~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~  374 (406)
                      +..++++|++-+.+|.+++||+.+++.+...      ..       .....|..+.++.+|.-+++-+ +|..+.|+.+-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            3456889999999999999999988765432      11       2446688999998898777765 57788888754


Q ss_pred             C
Q 015490          375 K  375 (406)
Q Consensus       375 ~  375 (406)
                      +
T Consensus        97 ~   97 (219)
T PF07569_consen   97 G   97 (219)
T ss_pred             c
Confidence            3

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.52  E-value=3.5  Score=40.29  Aligned_cols=181  Identities=16%  Similarity=0.167  Sum_probs=92.6

Q ss_pred             CeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecc---cCCcceEEEEEEEcCCC
Q 015490          189 GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLA---KENDELFASCRFSPLNN  265 (406)
Q Consensus       189 g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  265 (406)
                      -.|+||+. +|+.+..+.-.+..+-.+.|+.+.. |++...+|++++|++-.. ......   ......|..+.+..+|-
T Consensus        64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec~~f~~GV  140 (829)
T KOG2280|consen   64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLGE-FIESNSVGFESQMSDIVECRFFHNGV  140 (829)
T ss_pred             eeEEEEec-cccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecchh-hhcccccccccccCceeEEEEecCce
Confidence            46888885 5666656555555788999997654 667889999999998533 222211   11122344455555442


Q ss_pred             CceEEEEEEEcCCCcEEEEEeCCCceEEEEeee-cCCCe--EEEEEcCCCC---EEEEEe-CCCcEEEEECCCce-EEEE
Q 015490          266 EDYVLYIAAITDRGASIVTWNTTTWKRIRTKQV-VREPV--SSFNVSADGK---LLAVGT-ASGDISIIDSSSLQ-VRTA  337 (406)
Q Consensus       266 ~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~i--~~~~~sp~~~---~l~~~~-~dg~i~i~d~~~~~-~~~~  337 (406)
                           .++   ..+|.+.+.+-.......+... .....  .|-...++++   .++-.. ..+ ..++-..... ....
T Consensus       141 -----avl---t~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~  211 (829)
T KOG2280|consen  141 -----AVL---TVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHA  211 (829)
T ss_pred             -----EEE---ecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccc
Confidence                 122   2344554443332222222221 11111  2222222211   111111 011 1111111111 1112


Q ss_pred             eecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCch
Q 015490          338 VKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLN  382 (406)
Q Consensus       338 ~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~  382 (406)
                      +. .....+..+..||+.++|+--..+|.|.+-+.+..+....++
T Consensus       212 ~~-~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  212 LS-WPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             cC-CCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence            21 123567788999999999988899999888887766655444

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.49  E-value=1.2  Score=41.43  Aligned_cols=77  Identities=14%  Similarity=0.092  Sum_probs=51.9

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEE---------CCCceEEE---E-------eecccccceEEEEEcCCC---CeEE
Q 015490          302 PVSSFNVSADGKLLAVGTASGDISIID---------SSSLQVRT---A-------VKKAHLGIVTALAFSYDS---RALV  359 (406)
Q Consensus       302 ~i~~~~~sp~~~~l~~~~~dg~i~i~d---------~~~~~~~~---~-------~~~~~~~~v~~~~~sp~~---~~l~  359 (406)
                      .|..+..++.|..++..+.+|.+.++=         ++.++...   +       +.....-.+..++|+|+.   ..|.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            467788899999999999998554432         12232211   1       111122346788999974   6788


Q ss_pred             EEECCCcEEEEEecCCcCC
Q 015490          360 SASMDSSVRVTVIEDKKKS  378 (406)
Q Consensus       360 s~s~dg~i~iw~~~~~~~~  378 (406)
                      .-+.|..||+|++.....+
T Consensus       185 iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             EEecCcEEEEEecCCcchh
Confidence            8889999999999876653

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.47  E-value=4.1  Score=39.78  Aligned_cols=120  Identities=13%  Similarity=0.098  Sum_probs=70.0

Q ss_pred             ceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEEC--CCCCE
Q 015490          105 PVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFD--SEGTI  181 (406)
Q Consensus       105 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~g~~  181 (406)
                      ...++...-..+.-+.-+.-++..++.. ...+.||+  ...+..          +.-..+..++.|.++.|.  |+|+.
T Consensus        21 ~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD--~~~~~l----------E~~~~f~~~~~I~dLDWtst~d~qs   88 (631)
T PF12234_consen   21 LTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWD--TRSGVL----------EYEESFSEDDPIRDLDWTSTPDGQS   88 (631)
T ss_pred             EEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEE--cCCcEE----------EEeeeecCCCceeeceeeecCCCCE
Confidence            3344444445556666666555444433 44455554  433321          111223456889999985  58888


Q ss_pred             EEEeeCCCeEEEEeCC---------CcceEee--eeccC-CceeEEEEccCCCEEEEEeCCCCEEEEEc
Q 015490          182 FAAGSENGNLRVFKWP---------SLEIILN--ESEAH-ASVKDLSFSPDGKFLVSLGNRGPGRVWDL  238 (406)
Q Consensus       182 l~~~~~dg~i~vwd~~---------~~~~~~~--~~~~~-~~i~~~~~s~~~~~l~s~s~d~~i~iwd~  238 (406)
                      +++.+....|.+|.-.         +...+..  +..+. .+|.+..|.++|..++.++  +.+.|+|-
T Consensus        89 iLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen   89 ILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             EEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence            8888888999998631         1112222  23333 3799999999997555443  46777764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.26  E-value=0.74  Score=38.63  Aligned_cols=66  Identities=17%  Similarity=0.287  Sum_probs=47.8

Q ss_pred             ECCCCCEEEEeeCCCeEEEEeCCCcceEeee------e--------ccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCC
Q 015490          175 FDSEGTIFAAGSENGNLRVFKWPSLEIILNE------S--------EAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLAS  240 (406)
Q Consensus       175 ~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~------~--------~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~  240 (406)
                      +..+++++++-+.+|.+++||+.+++.+..-      .        .....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            4457788999999999999999988765332      1        2334778888888887776665 46778888653


Q ss_pred             C
Q 015490          241 S  241 (406)
Q Consensus       241 ~  241 (406)
                      +
T Consensus        97 ~   97 (219)
T PF07569_consen   97 G   97 (219)
T ss_pred             c
Confidence            3

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=93.24  E-value=5.6  Score=35.17  Aligned_cols=238  Identities=13%  Similarity=0.165  Sum_probs=104.5

Q ss_pred             CCCceEEEEccCCCeEEEEecCCeEEEEEeccccccee-ecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeE
Q 015490          113 SDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIR-RLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNL  191 (406)
Q Consensus       113 ~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i  191 (406)
                      ...+..|.|..+..-++++..+  .|+.  ..++.... .......      -.......++.|..+ ..+++| ..+. 
T Consensus        16 ~~~l~dV~F~d~~~G~~VG~~g--~il~--T~DGG~tW~~~~~~~~------~~~~~~l~~I~f~~~-~g~ivG-~~g~-   82 (302)
T PF14870_consen   16 DKPLLDVAFVDPNHGWAVGAYG--TILK--TTDGGKTWQPVSLDLD------NPFDYHLNSISFDGN-EGWIVG-EPGL-   82 (302)
T ss_dssp             SS-EEEEEESSSS-EEEEETTT--EEEE--ESSTTSS-EE-----S-----------EEEEEEEETT-EEEEEE-ETTE-
T ss_pred             CCceEEEEEecCCEEEEEecCC--EEEE--ECCCCccccccccCCC------ccceeeEEEEEecCC-ceEEEc-CCce-
Confidence            3467889998666666666544  3332  22222221 1111000      000123567777643 444444 4453 


Q ss_pred             EEEeCCCcceEeeee---ccCCceeEEEEccCCCEEEEEeCCCCEEEEEcC-CCeeeeecccCCcceEEEEEEEcCCCCc
Q 015490          192 RVFKWPSLEIILNES---EAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLA-SSAVATPLAKENDELFASCRFSPLNNED  267 (406)
Q Consensus       192 ~vwd~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (406)
                      .+...+.|+.-..+.   .-......+....++..++ .+..|.|  |-.. .|+.-..+.......+..+..+++++. 
T Consensus        83 ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~i--y~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~-  158 (302)
T PF14870_consen   83 LLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAI--YRTTDGGKTWQAVVSETSGSINDITRSSDGRY-  158 (302)
T ss_dssp             EEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--E--EEESSTTSSEEEEE-S----EEEEEE-TTS-E-
T ss_pred             EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcE--EEeCCCCCCeeEcccCCcceeEeEEECCCCcE-
Confidence            333334444332322   1122333444444443333 3444443  3322 233222222233445777888899873 


Q ss_pred             eEEEEEEEcCCCcEEEEEeCCC--ceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC-CCceEEEE--eec-c
Q 015490          268 YVLYIAAITDRGASIVTWNTTT--WKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDS-SSLQVRTA--VKK-A  341 (406)
Q Consensus       268 ~~l~~~~~~~~~~~i~~~d~~~--~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~-~~~~~~~~--~~~-~  341 (406)
                           ++.+.....+.-||.-.  ..+...  .....|.+|.|+|++.+.+++ ..|.|++=+. .....-..  ... .
T Consensus       159 -----vavs~~G~~~~s~~~G~~~w~~~~r--~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~  230 (302)
T PF14870_consen  159 -----VAVSSRGNFYSSWDPGQTTWQPHNR--NSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKT  230 (302)
T ss_dssp             -----EEEETTSSEEEEE-TT-SS-EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS
T ss_pred             -----EEEECcccEEEEecCCCccceEEcc--CccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCccc
Confidence                 44555566667788643  333332  234779999999998876654 7888888772 22222211  110 1


Q ss_pred             cccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490          342 HLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       342 ~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      ..-.+..++|.+++...++|+ .|.+ +...+.++.
T Consensus       231 ~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGkt  264 (302)
T PF14870_consen  231 NGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKT  264 (302)
T ss_dssp             --S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS
T ss_pred             CceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCcc
Confidence            122378999999887777654 4544 344444443

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=93.03  E-value=5.3  Score=34.26  Aligned_cols=198  Identities=14%  Similarity=0.106  Sum_probs=119.0

Q ss_pred             CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeee-e
Q 015490          168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT-P  246 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~-~  246 (406)
                      ..-..++-+|||..-+++...+.|--.|-.+|+....-.+....-..|..-|||..-++-+.. .|.-.|-++.+... .
T Consensus        62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~  140 (353)
T COG4257          62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFP  140 (353)
T ss_pred             CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEee
Confidence            344678889999888888888888888988998776655555567788888888765554333 55556665544322 2


Q ss_pred             ccc-CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeec-CCCeEEEEEcCCCCEEEEEeCCCcE
Q 015490          247 LAK-ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVV-REPVSSFNVSADGKLLAVGTASGDI  324 (406)
Q Consensus       247 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~i~~~~~sp~~~~l~~~~~dg~i  324 (406)
                      +.. +.........|.+.+.    +.++...+.-|.   .|..+ ..++.+... ...-+.|+..|||..-++.-.++.|
T Consensus       141 lp~~~a~~nlet~vfD~~G~----lWFt~q~G~yGr---LdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnai  212 (353)
T COG4257         141 LPLEHADANLETAVFDPWGN----LWFTGQIGAYGR---LDPAR-NVISVFPAPQGGGPYGICATPDGSVWYASLAGNAI  212 (353)
T ss_pred             cccccCCCcccceeeCCCcc----EEEeecccccee---cCccc-CceeeeccCCCCCCcceEECCCCcEEEEeccccce
Confidence            222 2233466778888886    333333222221   22222 123333322 2345789999999988877777778


Q ss_pred             EEEECCCceEEEEee-cccccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490          325 SIIDSSSLQVRTAVK-KAHLGIVTALAFSYDSRALVSASMDSSVRVTVIED  374 (406)
Q Consensus       325 ~i~d~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~  374 (406)
                      -..|..++....... .......+.+--+|.|+.-+|-...+.+..+|-.+
T Consensus       213 aridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~  263 (353)
T COG4257         213 ARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV  263 (353)
T ss_pred             EEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccc
Confidence            777876653222211 12122344555567777777766666666666543

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.01  E-value=1.8  Score=42.11  Aligned_cols=84  Identities=13%  Similarity=0.122  Sum_probs=57.7

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEc--CCCCeEEEEECCCcEEEEEecCCcCC
Q 015490          301 EPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFS--YDSRALVSASMDSSVRVTVIEDKKKS  378 (406)
Q Consensus       301 ~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~s--p~~~~l~s~s~dg~i~iw~~~~~~~~  378 (406)
                      ....-+.-|.-++..++-+....+.|||.+.+.....-.-...+.|.++.|.  |+|+.+++.+..+.|.++--......
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT  109 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence            4455566666566555555556799999998886555432357889999985  58999999999999999865433333


Q ss_pred             CCchHH
Q 015490          379 GGLNLW  384 (406)
Q Consensus       379 ~~~~~~  384 (406)
                      ...|.|
T Consensus       110 ~~~p~w  115 (631)
T PF12234_consen  110 NKGPSW  115 (631)
T ss_pred             cCCccc
Confidence            334443

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.86  E-value=4.3  Score=38.05  Aligned_cols=80  Identities=13%  Similarity=0.104  Sum_probs=54.3

Q ss_pred             cEEEEEECCCCCEEEEeeCCCeEEEEeC---------CCcceEe--e--------ee-ccCCceeEEEEccCC---CEEE
Q 015490          169 QQLALTFDSEGTIFAAGSENGNLRVFKW---------PSLEIIL--N--------ES-EAHASVKDLSFSPDG---KFLV  225 (406)
Q Consensus       169 ~v~~~~~s~~g~~l~~~~~dg~i~vwd~---------~~~~~~~--~--------~~-~~~~~i~~~~~s~~~---~~l~  225 (406)
                      .|..+..++.|..++..+.+|.+.++=.         ++|+...  .        +. ..+-.+...+|+|+.   ..|.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            5677888999999998888887665431         2332211  1        11 112256788999975   5788


Q ss_pred             EEeCCCCEEEEEcCCCeeeeecc
Q 015490          226 SLGNRGPGRVWDLASSAVATPLA  248 (406)
Q Consensus       226 s~s~d~~i~iwd~~~~~~~~~~~  248 (406)
                      .-+.|..|++||+...+.+....
T Consensus       185 iL~sdnviRiy~lS~~telylqp  207 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPTELYLQP  207 (741)
T ss_pred             EEecCcEEEEEecCCcchhhccC
Confidence            88889999999998766654433

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=92.73  E-value=8.8  Score=36.08  Aligned_cols=112  Identities=13%  Similarity=0.094  Sum_probs=62.1

Q ss_pred             CCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCee--eeecc----cCCcceEEEEEEEcCC---CCceEEEEEEEcCC-
Q 015490          209 HASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAV--ATPLA----KENDELFASCRFSPLN---NEDYVLYIAAITDR-  278 (406)
Q Consensus       209 ~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~--~~~~~----~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~-  278 (406)
                      -...+.|+|.|||++|++--..|.|++++..++..  +..+.    .........++++|+-   ..+..+|+..+... 
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~  108 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG  108 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence            34568999999998666555469999998655432  22221    1123456789999986   43344555543211 


Q ss_pred             ------CcEEEEEeCCC--c-----eEEE-Eeee-cCCCeEEEEEcCCCCEEEEEeC
Q 015490          279 ------GASIVTWNTTT--W-----KRIR-TKQV-VREPVSSFNVSADGKLLAVGTA  320 (406)
Q Consensus       279 ------~~~i~~~d~~~--~-----~~~~-~~~~-~~~~i~~~~~sp~~~~l~~~~~  320 (406)
                            ...|.-|.+..  .     +.+. .+.. ..+.-..|.|.|||.+.++.+.
T Consensus       109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD  165 (454)
T TIGR03606       109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGE  165 (454)
T ss_pred             CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECC
Confidence                  23454454431  1     1111 1110 0123457889999986665443

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.65  E-value=1.7  Score=40.34  Aligned_cols=155  Identities=12%  Similarity=0.179  Sum_probs=91.0

Q ss_pred             CCCEEEE-EeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEE-EEEEEcCCCcEEEEEeCCCce-EEEEe
Q 015490          220 DGKFLVS-LGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVL-YIAAITDRGASIVTWNTTTWK-RIRTK  296 (406)
Q Consensus       220 ~~~~l~s-~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~i~~~d~~~~~-~~~~~  296 (406)
                      |.++|+. ++....++-.|++.|+.+.....+...   -+.|.|..+...+. --+..|-.+..|.-.|.+-.. .+...
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv---vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~  554 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV---VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV  554 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc---eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence            4444443 445567777888889888887765443   46676654320000 011223345566666765322 22211


Q ss_pred             eecCCCeEEEEEcC----CCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEe
Q 015490          297 QVVREPVSSFNVSA----DGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVI  372 (406)
Q Consensus       297 ~~~~~~i~~~~~sp----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~  372 (406)
                      . .....+.-.||.    .+.++|+++..|.|++||.-.-+....++ +....|..+..+.+|+++++.+. ..+.+-|+
T Consensus       555 e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP-~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~  631 (776)
T COG5167         555 E-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALP-GLGDAIKHIDVTANGKHILATCK-NYLLLTDV  631 (776)
T ss_pred             e-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCc-ccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence            1 112222233332    34599999999999999975444444443 67788999999999998876554 56777776


Q ss_pred             c--CCcCCCC
Q 015490          373 E--DKKKSGG  380 (406)
Q Consensus       373 ~--~~~~~~~  380 (406)
                      +  .++..+.
T Consensus       632 ~ik~g~~aGr  641 (776)
T COG5167         632 PIKYGQPAGR  641 (776)
T ss_pred             ccccCCcccc
Confidence            4  4444443

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=92.64  E-value=0.072  Score=52.26  Aligned_cols=93  Identities=15%  Similarity=0.130  Sum_probs=60.3

Q ss_pred             CcEEEEEeCC--CceEEEEe-----eecCCCeEEEEEcC---CCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEE
Q 015490          279 GASIVTWNTT--TWKRIRTK-----QVVREPVSSFNVSA---DGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTA  348 (406)
Q Consensus       279 ~~~i~~~d~~--~~~~~~~~-----~~~~~~i~~~~~sp---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~  348 (406)
                      -|.+.+||+.  .|+....+     ......+.-+.|.|   +.-++.++-.++.+++........  .+.++|...+..
T Consensus       152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d  229 (1283)
T KOG1916|consen  152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTD  229 (1283)
T ss_pred             hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH--HHHHhcCCCccc
Confidence            4567777764  33332222     22234556667766   566777787888888877654332  222357666554


Q ss_pred             EE-----------EcCCCCeEEEEECCCcEEEEEec
Q 015490          349 LA-----------FSYDSRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       349 ~~-----------~sp~~~~l~s~s~dg~i~iw~~~  373 (406)
                      ++           .||||..++.++.||.+++|.+.
T Consensus       230 ~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  230 MAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             HHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence            43           58999999999999999999874

>COG1770 PtrB Protease II [Amino acid transport and metabolism]

Probab=92.55  E-value=11  Score=36.69  Aligned_cols=202  Identities=15%  Similarity=0.125  Sum_probs=105.8

Q ss_pred             cEEEEEECCCCCEEEEe-----eCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCC---EEEEE--c
Q 015490          169 QQLALTFDSEGTIFAAG-----SENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGP---GRVWD--L  238 (406)
Q Consensus       169 ~v~~~~~s~~g~~l~~~-----~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~---i~iwd--~  238 (406)
                      .+-.++.|||.+++|.+     ++.-++++.|+.+++......  .+....++|.+|++.|.....|..   =++|-  +
T Consensus       130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i--~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~~  207 (682)
T COG1770         130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEI--TNTSGSFAWAADGKTLFYTRLDENHRPDKVWRHRL  207 (682)
T ss_pred             eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhh--cccccceEEecCCCeEEEEEEcCCCCcceEEEEec
Confidence            35567889999998865     334479999999987654332  223578999999998777665432   23443  3


Q ss_pred             CC--CeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeee--cCCCeEEEEEcCCCCE
Q 015490          239 AS--SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQV--VREPVSSFNVSADGKL  314 (406)
Q Consensus       239 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~i~~~~~sp~~~~  314 (406)
                      .+  ......+.........++.-+.....   +++.+.......+++.+............  ..+--..+.  ..+.+
T Consensus       208 gt~~~~d~lvyeE~d~~f~~~v~~s~s~~y---i~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~e--h~~d~  282 (682)
T COG1770         208 GTPGSSDELVYEEKDDRFFLSVGRSRSEAY---IVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVE--HGGDR  282 (682)
T ss_pred             CCCCCcceEEEEcCCCcEEEEeeeccCCce---EEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeee--ecCcE
Confidence            22  11111222222223333433444442   33334445567888888776543222211  112112222  22343


Q ss_pred             EE-EEeCCC-cEEEEECCC---ceEEEEeecccccceEEEEEcCCCCeEEEEECC---CcEEEEEecCCcCC
Q 015490          315 LA-VGTASG-DISIIDSSS---LQVRTAVKKAHLGIVTALAFSYDSRALVSASMD---SSVRVTVIEDKKKS  378 (406)
Q Consensus       315 l~-~~~~dg-~i~i~d~~~---~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d---g~i~iw~~~~~~~~  378 (406)
                      ++ -...+| ..+|+....   ...-..+. .|...+.--.|+--..+|+..-.+   ..|++++..+++..
T Consensus       283 f~i~sN~~gknf~l~~ap~~~~~~~w~~~I-~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~  353 (682)
T COG1770         283 FYILSNADGKNFKLVRAPVSADKSNWRELI-PHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEER  353 (682)
T ss_pred             EEEEecCCCcceEEEEccCCCChhcCeeee-ccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCcee
Confidence            33 333445 456665443   11112222 466665555555555666655433   35888888877653

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=92.22  E-value=9.8  Score=35.39  Aligned_cols=146  Identities=9%  Similarity=0.130  Sum_probs=84.3

Q ss_pred             CCEEEEEeCCCCEEEEEcCCCeee---eecccCCcceEEEEEEEc---CCCCceEEEEEEEcCCCcEEEEEeCCC--ce-
Q 015490          221 GKFLVSLGNRGPGRVWDLASSAVA---TPLAKENDELFASCRFSP---LNNEDYVLYIAAITDRGASIVTWNTTT--WK-  291 (406)
Q Consensus       221 ~~~l~s~s~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~i~~~d~~~--~~-  291 (406)
                      ...|++||..|.++||+...+...   ..+...-..+|-.+....   .... ..+.++    .-..+.+|.+..  +. 
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~-~~LaVL----hP~kl~vY~v~~~~g~~  111 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSED-LQLAVL----HPRKLSVYSVSLVDGTV  111 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCc-ceEEEe----cCCEEEEEEEEecCCCc
Confidence            358999999999999998654311   122223344555555443   2221 112111    355677776521  11 


Q ss_pred             ------EEEEeeecC--CCeEEEEEcC----C-CCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeE
Q 015490          292 ------RIRTKQVVR--EPVSSFNVSA----D-GKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRAL  358 (406)
Q Consensus       292 ------~~~~~~~~~--~~i~~~~~sp----~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  358 (406)
                            .+.....|.  .....+++-|    . ..+|.+=+.||.+.+|+-+.......+.  ..--...+.+.+.-..+
T Consensus       112 ~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp--~~llPgPl~Y~~~tDsf  189 (418)
T PF14727_consen  112 EHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLP--DFLLPGPLCYCPRTDSF  189 (418)
T ss_pred             ccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcC--CCCCCcCeEEeecCCEE
Confidence                  122222222  3344555544    2 3577888899999999987655444443  22223356788877789


Q ss_pred             EEEECCCcEEEEEec
Q 015490          359 VSASMDSSVRVTVIE  373 (406)
Q Consensus       359 ~s~s~dg~i~iw~~~  373 (406)
                      ++++.+..+.-|...
T Consensus       190 vt~sss~~l~~Yky~  204 (418)
T PF14727_consen  190 VTASSSWTLECYKYQ  204 (418)
T ss_pred             EEecCceeEEEecHH
Confidence            999888888888763

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.73  E-value=1.3  Score=25.55  Aligned_cols=40  Identities=28%  Similarity=0.359  Sum_probs=28.5

Q ss_pred             CCCCEEEEEeC-CCcEEEEECCCceEEEEeecccccceEEEEE
Q 015490          310 ADGKLLAVGTA-SGDISIIDSSSLQVRTAVKKAHLGIVTALAF  351 (406)
Q Consensus       310 p~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~  351 (406)
                      |++++|+++.. +++|.++|..+++.+..+..  ......++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v--g~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV--GGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC--CCCCceEEe
Confidence            57787777665 78999999999988888762  233345544

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=91.58  E-value=17  Score=36.95  Aligned_cols=68  Identities=18%  Similarity=0.195  Sum_probs=50.3

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEe----e----------c----ccccceEEEEEcCCCCeEEEEE
Q 015490          301 EPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAV----K----------K----AHLGIVTALAFSYDSRALVSAS  362 (406)
Q Consensus       301 ~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~----------~----~~~~~v~~~~~sp~~~~l~s~s  362 (406)
                      ..|.+++...-+.+++....||+|.++|..+.+.+...    .          .    .+..++..++|||.+..++.-.
T Consensus       260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~  339 (753)
T PF11635_consen  260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID  339 (753)
T ss_pred             CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence            45677777777789999999999999998877554433    1          0    0111344688999999999999


Q ss_pred             CCCcEE
Q 015490          363 MDSSVR  368 (406)
Q Consensus       363 ~dg~i~  368 (406)
                      .+|.+.
T Consensus       340 ~~~~~~  345 (753)
T PF11635_consen  340 EDGKTK  345 (753)
T ss_pred             cCCCce
Confidence            999966

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=91.38  E-value=2.1  Score=34.46  Aligned_cols=29  Identities=24%  Similarity=0.481  Sum_probs=24.5

Q ss_pred             cEEEEEECCCC------CEEEEeeCCCeEEEEeCC
Q 015490          169 QQLALTFDSEG------TIFAAGSENGNLRVFKWP  197 (406)
Q Consensus       169 ~v~~~~~s~~g------~~l~~~~~dg~i~vwd~~  197 (406)
                      .+..++|||.|      .+|++.+.++.|.||.-.
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            68899999955      478888999999999865

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=91.37  E-value=9.3  Score=33.42  Aligned_cols=228  Identities=12%  Similarity=0.136  Sum_probs=117.5

Q ss_pred             CceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc------ccCcEEEEEECCCCC-------
Q 015490          115 LPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE------NVGQQLALTFDSEGT-------  180 (406)
Q Consensus       115 ~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~s~~g~-------  180 (406)
                      ....|+++|.+.+-++.. .+...+|+-+..+....       .......+.      .....+.+.|+....       
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~-------~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g   96 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLV-------QDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEG   96 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCC-------ccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCC
Confidence            347899999887666553 66667777652211100       000111111      223456666654322       


Q ss_pred             -----EEEEeeCCCeEEEEeCCCcce-----Eeeeecc-CCc-eeEEEEcc--CCCEEEEEe-CCCCEEEEEcCCCeeee
Q 015490          181 -----IFAAGSENGNLRVFKWPSLEI-----ILNESEA-HAS-VKDLSFSP--DGKFLVSLG-NRGPGRVWDLASSAVAT  245 (406)
Q Consensus       181 -----~l~~~~~dg~i~vwd~~~~~~-----~~~~~~~-~~~-i~~~~~s~--~~~~l~s~s-~d~~i~iwd~~~~~~~~  245 (406)
                           .++.+++||+|.-|.-.-+..     ...+... ... -..+++..  .+.+|..+. ..++|.+||-.-.+...
T Consensus        97 ~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~  176 (336)
T TIGR03118        97 ITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPL  176 (336)
T ss_pred             cccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccC
Confidence                 367778999999998532221     1112111 122 33455543  345555553 57889999864332211


Q ss_pred             --ecccC---Cc-ce--EE------EEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeec--CCCeEEEEEc
Q 015490          246 --PLAKE---ND-EL--FA------SCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVV--REPVSSFNVS  309 (406)
Q Consensus       246 --~~~~~---~~-~~--~~------~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~i~~~~~s  309 (406)
                        .+...   .. .+  |.      -+.|.......   .--..+...|.|-++|+.- +.++++...  -...+.|+..
T Consensus       177 ~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~---~d~v~G~G~G~VdvFd~~G-~l~~r~as~g~LNaPWG~a~A  252 (336)
T TIGR03118       177 PGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADR---NDEVAGAGLGYVNVFTLNG-QLLRRVASSGRLNAPWGLAIA  252 (336)
T ss_pred             CCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcc---cccccCCCcceEEEEcCCC-cEEEEeccCCcccCCceeeeC
Confidence              01100   00 00  00      11111111000   0012233457899999874 556655322  1344667776


Q ss_pred             C------CCCEEEEEeCCCcEEEEECCCceEEEEeeccccc-----ceEEEEEcC
Q 015490          310 A------DGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLG-----IVTALAFSY  353 (406)
Q Consensus       310 p------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----~v~~~~~sp  353 (406)
                      |      .|.+|+---.||+|..||..+++.+..+......     ..+.++|..
T Consensus       253 Pa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       253 PESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             hhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence            5      4566665556999999999999988877632222     356778765

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PHA02790 Kelch-like protein; Provisional

Probab=91.12  E-value=15  Score=35.24  Aligned_cols=64  Identities=8%  Similarity=0.027  Sum_probs=33.0

Q ss_pred             CCCEEEEeeCCC---eEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeee
Q 015490          178 EGTIFAAGSENG---NLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVA  244 (406)
Q Consensus       178 ~g~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~  244 (406)
                      +|+..+.|+.++   .+..||.++.+-...-.-....-...+..-+++..+.|   |.+.+||.++.+-.
T Consensus       362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~  428 (480)
T PHA02790        362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESSNTWT  428 (480)
T ss_pred             CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEecCCCCcEe
Confidence            677888887653   46788876654332111111111111112345555554   35778888766543

>PRK13684 Ycf48-like protein; Provisional

Probab=90.83  E-value=12  Score=33.79  Aligned_cols=150  Identities=17%  Similarity=0.219  Sum_probs=82.4

Q ss_pred             CceeEEEEccCCCEEEEEeCCCCEEE-EEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC
Q 015490          210 ASVKDLSFSPDGKFLVSLGNRGPGRV-WDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT  288 (406)
Q Consensus       210 ~~i~~~~~s~~~~~l~s~s~d~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~  288 (406)
                      ..+.++.+.+++.+++++. .|.+.. +| ..++.-..+.......+..+.+.++++-     +++  +..|.+++=..+
T Consensus       173 g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~-----~~v--g~~G~~~~~s~d  243 (334)
T PRK13684        173 GVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNL-----WML--ARGGQIRFNDPD  243 (334)
T ss_pred             ceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCE-----EEE--ecCCEEEEccCC
Confidence            4788999999887665544 554433 22 1223223333344556788899998862     222  234555432233


Q ss_pred             CceEEEEeee----cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEee--cccccceEEEEEcCCCCeEEEEE
Q 015490          289 TWKRIRTKQV----VREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVK--KAHLGIVTALAFSYDSRALVSAS  362 (406)
Q Consensus       289 ~~~~~~~~~~----~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~s~s  362 (406)
                      .+..-.....    ....+.++.+.|++..++++ .+|.+. .....++.-....  ..-......+.|..+++.++ .+
T Consensus       244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G  320 (334)
T PRK13684        244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LG  320 (334)
T ss_pred             CCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-EC
Confidence            3322221111    12357889999988766554 567554 3444444333321  11223577788877766655 45


Q ss_pred             CCCcEEEEE
Q 015490          363 MDSSVRVTV  371 (406)
Q Consensus       363 ~dg~i~iw~  371 (406)
                      ..|.|.-|+
T Consensus       321 ~~G~il~~~  329 (334)
T PRK13684        321 QRGVLLRYV  329 (334)
T ss_pred             CCceEEEec
Confidence            678887665

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=90.82  E-value=14  Score=34.33  Aligned_cols=145  Identities=9%  Similarity=0.049  Sum_probs=78.3

Q ss_pred             EEEEEECCCCCEEEEeeCCCeEEEEeCCCcce--EeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCe-----
Q 015490          170 QLALTFDSEGTIFAAGSENGNLRVFKWPSLEI--ILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSA-----  242 (406)
Q Consensus       170 v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~-----  242 (406)
                      ...+..++||.+++.+..-..++-||  .+..  ...-......++.+.|.+++..++++ ..|.+. +....++     
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~  316 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDF  316 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccccc
Confidence            44566778888887765443333344  3332  11122233478999999999877655 455543 3333332     


Q ss_pred             eeeecccC-CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEe---eecCCCeEEEEEcCCCCEEEEE
Q 015490          243 VATPLAKE-NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTK---QVVREPVSSFNVSADGKLLAVG  318 (406)
Q Consensus       243 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~---~~~~~~i~~~~~sp~~~~l~~~  318 (406)
                      ........ ....+..+.|.+++.      +.++ +..|.+.... ..++.-...   ..-...++.+.|.++++.+++|
T Consensus       317 ~f~~~~~~~~~~~l~~v~~~~d~~------~~a~-G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G  388 (398)
T PLN00033        317 DFEEADIKSRGFGILDVGYRSKKE------AWAA-GGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG  388 (398)
T ss_pred             ceeecccCCCCcceEEEEEcCCCc------EEEE-ECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe
Confidence            12222211 223477888887776      2333 3455554443 333322221   2223568899998877766665


Q ss_pred             eCCCcEEEE
Q 015490          319 TASGDISII  327 (406)
Q Consensus       319 ~~dg~i~i~  327 (406)
                       .+|.|.-|
T Consensus       389 -~~G~il~~  396 (398)
T PLN00033        389 -NDGVLLRY  396 (398)
T ss_pred             -CCcEEEEe
Confidence             57776554

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=90.75  E-value=11  Score=33.18  Aligned_cols=139  Identities=10%  Similarity=0.101  Sum_probs=81.3

Q ss_pred             CEEEEEcCCCeeeeecccC-----CcceEEEEEEEcCCCCc--eEEEEEEEcCCCcEEEEEeCCCceEEEEeeec-----
Q 015490          232 PGRVWDLASSAVATPLAKE-----NDELFASCRFSPLNNED--YVLYIAAITDRGASIVTWNTTTWKRIRTKQVV-----  299 (406)
Q Consensus       232 ~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-----  299 (406)
                      .|.+||+.+++.++++..+     ....+..+++.......  ...|  .+-...+.|.++|+.+++..+.+..+     
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY--ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p  112 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY--ITDSGGPGLIVYDLATGKSWRVLHNSFSPDP  112 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE--EEETTTCEEEEEETTTTEEEEEETCGCTTS-
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE--EeCCCcCcEEEEEccCCcEEEEecCCcceec
Confidence            5777888888877665432     34557777777643311  2333  34445568999999988765544322     


Q ss_pred             --------------CCCeEEEEEcC---CCCEEEEEeCCCcEEEEECCC-----ce---------EEEEeecccc-cceE
Q 015490          300 --------------REPVSSFNVSA---DGKLLAVGTASGDISIIDSSS-----LQ---------VRTAVKKAHL-GIVT  347 (406)
Q Consensus       300 --------------~~~i~~~~~sp---~~~~l~~~~~dg~i~i~d~~~-----~~---------~~~~~~~~~~-~~v~  347 (406)
                                    ...+..++.+|   ++++|+.....+ -++|.+.+     ..         .+..+  +.. ....
T Consensus       113 ~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~l--G~k~~~s~  189 (287)
T PF03022_consen  113 DAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDL--GDKGSQSD  189 (287)
T ss_dssp             SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEE--EE---SEC
T ss_pred             cccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceec--cccCCCCc
Confidence                          12356666655   667777665443 22333221     11         11111  221 3456


Q ss_pred             EEEEcCCCCeEEEEECCCcEEEEEecCC
Q 015490          348 ALAFSYDSRALVSASMDSSVRVTVIEDK  375 (406)
Q Consensus       348 ~~~~sp~~~~l~s~s~dg~i~iw~~~~~  375 (406)
                      .++.+++|..+++--..+.|..|+..++
T Consensus       190 g~~~D~~G~ly~~~~~~~aI~~w~~~~~  217 (287)
T PF03022_consen  190 GMAIDPNGNLYFTDVEQNAIGCWDPDGP  217 (287)
T ss_dssp             EEEEETTTEEEEEECCCTEEEEEETTTS
T ss_pred             eEEECCCCcEEEecCCCCeEEEEeCCCC
Confidence            7888999998888888999999998763

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=90.71  E-value=1.3  Score=25.23  Aligned_cols=31  Identities=19%  Similarity=0.180  Sum_probs=20.4

Q ss_pred             EecCCCCceEEEEccCCCeEEEEe--c--CCeEEE
Q 015490          109 LRTDSDLPYRMAIHPHGDGIICAL--Q--NSCRLF  139 (406)
Q Consensus       109 ~~~h~~~v~~~~~sp~~~~l~~~~--~--~~~~i~  139 (406)
                      +......-....|+|||+.|+.++  +  +...||
T Consensus         4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            334445667889999999999876  4  455554

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=90.64  E-value=0.029  Score=51.10  Aligned_cols=145  Identities=14%  Similarity=0.165  Sum_probs=96.8

Q ss_pred             eEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceE
Q 015490          213 KDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKR  292 (406)
Q Consensus       213 ~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~  292 (406)
                      -...|-+++.-++.++.+..+..||-.. +.......  ....-.++|..++..     ++......+.+.+||+.+...
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD~ag-q~~le~n~--tg~aldm~wDkegdv-----lavlAek~~piylwd~n~eyt  109 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYDKAG-QVILELNP--TGKALDMAWDKEGDV-----LAVLAEKTGPIYLWDVNSEYT  109 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhhhhc-ceecccCC--chhHhhhhhccccch-----hhhhhhcCCCeeechhhhhhH
Confidence            3466788777788888888888888643 32222221  122336788887775     334446788999999986432


Q ss_pred             EEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcE
Q 015490          293 IRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSV  367 (406)
Q Consensus       293 ~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i  367 (406)
                      ...-.+....-.-+.|++....++.+...|.+.|++..+.+.....- .|...+++++|.+.+. .+.++.|..+
T Consensus       110 qqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~G-kh~RRgtq~av~lEd~-vil~dcd~~L  182 (615)
T KOG2247|consen  110 QQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMG-KHQRRGTQIAVTLEDY-VILCDCDNTL  182 (615)
T ss_pred             HHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhc-ccccceeEEEecccce-eeecCcHHHH
Confidence            11111112222337899999999999899999999998877666552 3889999999999765 4455555443

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=90.62  E-value=11  Score=32.96  Aligned_cols=117  Identities=12%  Similarity=0.222  Sum_probs=67.3

Q ss_pred             CeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEe------CCCCEEEEEcCCCeeeeeccc----CCcceEEEE
Q 015490          189 GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLG------NRGPGRVWDLASSAVATPLAK----ENDELFASC  258 (406)
Q Consensus       189 g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s------~d~~i~iwd~~~~~~~~~~~~----~~~~~~~~~  258 (406)
                      ..|++||..+.+-...-.+-.+.|+++.|..+.+.++.|.      ....+..||..+..-.. +..    .-..++..+
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~-~~~~~s~~ipgpv~a~   94 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSS-LGGGSSNSIPGPVTAL   94 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeee-cCCcccccCCCcEEEE
Confidence            3599999877665544444455899999986666666663      34568889987664322 222    112456666


Q ss_pred             EEEcCCCCceEEEEEEE-cCCCcEEEEEeCCCceEEEE-eeecCCCeEEEEE
Q 015490          259 RFSPLNNEDYVLYIAAI-TDRGASIVTWNTTTWKRIRT-KQVVREPVSSFNV  308 (406)
Q Consensus       259 ~~~~~~~~~~~l~~~~~-~~~~~~i~~~d~~~~~~~~~-~~~~~~~i~~~~~  308 (406)
                      .+......  .+++... ...+..|..||-.++..+.. .......|..+.+
T Consensus        95 ~~~~~d~~--~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~  144 (281)
T PF12768_consen   95 TFISNDGS--NFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQV  144 (281)
T ss_pred             EeeccCCc--eEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEE
Confidence            66443332  1222222 34455688888877666554 2222334555443

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=90.58  E-value=9.3  Score=32.56  Aligned_cols=142  Identities=11%  Similarity=0.114  Sum_probs=78.1

Q ss_pred             EEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeC---CCCEEEEEcCC----Ceeeeec-ccCCcceEEEEEEEc
Q 015490          191 LRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGN---RGPGRVWDLAS----SAVATPL-AKENDELFASCRFSP  262 (406)
Q Consensus       191 i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~---d~~i~iwd~~~----~~~~~~~-~~~~~~~~~~~~~~~  262 (406)
                      -.+||+.+++.............+-.+.+||++|.+|+.   ...+++++...    ......- ............-.+
T Consensus        48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~  127 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP  127 (243)
T ss_pred             EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence            457888877654322222224455567899999998875   24588887644    1111100 012223344556677


Q ss_pred             CCCCceEEEEEEEcCCCcEEEEEeCCCc--eEEEE--ee-----ecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCce
Q 015490          263 LNNEDYVLYIAAITDRGASIVTWNTTTW--KRIRT--KQ-----VVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQ  333 (406)
Q Consensus       263 ~~~~~~~l~~~~~~~~~~~i~~~d~~~~--~~~~~--~~-----~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~  333 (406)
                      +|+.     ++..|......-+|.....  .....  +.     .....--.+...|+|+.++.+..+.  .|||..+.+
T Consensus       128 DG~v-----lIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~  200 (243)
T PF07250_consen  128 DGRV-----LIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNT  200 (243)
T ss_pred             CCCE-----EEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCe
Confidence            8873     4455555555566654321  11111  11     0011112466679999998887654  667988887


Q ss_pred             EEEEee
Q 015490          334 VRTAVK  339 (406)
Q Consensus       334 ~~~~~~  339 (406)
                      .++.+.
T Consensus       201 v~~~lP  206 (243)
T PF07250_consen  201 VVRTLP  206 (243)
T ss_pred             EEeeCC
Confidence            766664

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=90.48  E-value=1.3  Score=25.23  Aligned_cols=31  Identities=23%  Similarity=0.195  Sum_probs=20.7

Q ss_pred             eecCCCeEEEEEcCCCCEEEEEeC-C--CcEEEE
Q 015490          297 QVVREPVSSFNVSADGKLLAVGTA-S--GDISII  327 (406)
Q Consensus       297 ~~~~~~i~~~~~sp~~~~l~~~~~-d--g~i~i~  327 (406)
                      ...........|||||+.|+..+. +  |.-.||
T Consensus         5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            334456788999999998887765 4  555554

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=90.47  E-value=15  Score=34.12  Aligned_cols=146  Identities=12%  Similarity=0.110  Sum_probs=78.3

Q ss_pred             eeEEEEccCCCEEEEEeCCCCEEEEEcCCCeee-eecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc
Q 015490          212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVA-TPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW  290 (406)
Q Consensus       212 i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~  290 (406)
                      ...+..++|+.+++++.....++-||-  +... ..+.......+..+.|.+++.-     +++  ...|.+.. ....+
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l-----~l~--g~~G~l~~-S~d~G  310 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGL-----WLL--TRGGGLYV-SKGTG  310 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCE-----EEE--eCCceEEE-ecCCC
Confidence            344566778776666654433333443  2221 2223333455788899888872     222  23444433 23222


Q ss_pred             e-----EEEEeee--cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEee--cccccceEEEEEcCCCCeEEEE
Q 015490          291 K-----RIRTKQV--VREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVK--KAHLGIVTALAFSYDSRALVSA  361 (406)
Q Consensus       291 ~-----~~~~~~~--~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~s~  361 (406)
                      +     .......  ....+.++.|.+++..+++| ..|.+..-. ..++.-....  ..-....+.+.|.++++.+++ 
T Consensus       311 ~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-  387 (398)
T PLN00033        311 LTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL-  387 (398)
T ss_pred             CcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEE-
Confidence            2     1222221  12358889999888766655 577665543 4444322221  123456889999887776665 


Q ss_pred             ECCCcEEEE
Q 015490          362 SMDSSVRVT  370 (406)
Q Consensus       362 s~dg~i~iw  370 (406)
                      +.+|.|.-|
T Consensus       388 G~~G~il~~  396 (398)
T PLN00033        388 GNDGVLLRY  396 (398)
T ss_pred             eCCcEEEEe
Confidence            467876554

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=90.31  E-value=16  Score=36.32  Aligned_cols=100  Identities=14%  Similarity=0.263  Sum_probs=65.8

Q ss_pred             EEEEcCCCcEEEEEeCCC-------c-------------eEEEEeeecCCCeEEEEEc--CCCCEEEEEeCCCcEEEEEC
Q 015490          272 IAAITDRGASIVTWNTTT-------W-------------KRIRTKQVVREPVSSFNVS--ADGKLLAVGTASGDISIIDS  329 (406)
Q Consensus       272 ~~~~~~~~~~i~~~d~~~-------~-------------~~~~~~~~~~~~i~~~~~s--p~~~~l~~~~~dg~i~i~d~  329 (406)
                      +++.+.+||.|.+|.+.+       .             ++...+.. ...+++++++  ...++||+++....|.||-.
T Consensus       116 VLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v-~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf  194 (717)
T PF08728_consen  116 VLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV-GASAWGLDIHDYKKSRLIAVSSNSQEVTVFAF  194 (717)
T ss_pred             EEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeec-CCceeEEEEEecCcceEEEEecCCceEEEEEE
Confidence            445567899999996631       0             01122222 3568899998  78889999988888888765


Q ss_pred             CCc--eEEEEeecccccceEEEEEcCCC---C---eEEEEECCCcEEEEEe
Q 015490          330 SSL--QVRTAVKKAHLGIVTALAFSYDS---R---ALVSASMDSSVRVTVI  372 (406)
Q Consensus       330 ~~~--~~~~~~~~~~~~~v~~~~~sp~~---~---~l~s~s~dg~i~iw~~  372 (406)
                      ...  +....-...|...|-+++|-++.   .   .|++++-.|.+.+|++
T Consensus       195 ~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  195 ALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             eccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            432  11111011255568889997743   2   7888899999999988

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=89.94  E-value=0.9  Score=44.28  Aligned_cols=73  Identities=21%  Similarity=0.206  Sum_probs=43.2

Q ss_pred             CCCCEEEEEeCCCcEEEEECCC----ceEEEEe-ecc--------------------cccceEEEEEcC----CCCeEEE
Q 015490          310 ADGKLLAVGTASGDISIIDSSS----LQVRTAV-KKA--------------------HLGIVTALAFSY----DSRALVS  360 (406)
Q Consensus       310 p~~~~l~~~~~dg~i~i~d~~~----~~~~~~~-~~~--------------------~~~~v~~~~~sp----~~~~l~s  360 (406)
                      ++...++++..||.+.......    +...... ...                    ....+..++++.    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            4556777777788777776653    1111111 100                    123355666666    6789999


Q ss_pred             EECCCcEEEEEecCCcCCCCch
Q 015490          361 ASMDSSVRVTVIEDKKKSGGLN  382 (406)
Q Consensus       361 ~s~dg~i~iw~~~~~~~~~~~~  382 (406)
                      .+.|+++|+||+.+++.+....
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEec
Confidence            9999999999999999855543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.84  E-value=7.5  Score=35.85  Aligned_cols=104  Identities=14%  Similarity=0.173  Sum_probs=61.4

Q ss_pred             cCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecc--cC-CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEE
Q 015490          208 AHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLA--KE-NDELFASCRFSPLNNEDYVLYIAAITDRGASIVT  284 (406)
Q Consensus       208 ~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~  284 (406)
                      ..++|.++.||+|.+.+|+--.+++|.+++....+......  .. ....+....|+....      ++....  ..+-+
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e------~A~i~~--~G~e~  136 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTE------IAFITD--QGIEF  136 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCee------EEEEec--CCeEE
Confidence            34589999999999999999999999999985444332221  11 122366788887744      222222  22334


Q ss_pred             EeCCCc-eEEEEeeecCCCeEEEEEcCCCCEEEEEe
Q 015490          285 WNTTTW-KRIRTKQVVREPVSSFNVSADGKLLAVGT  319 (406)
Q Consensus       285 ~d~~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~  319 (406)
                      |-.... +.++..+.+...|.=..|.++-+.+..++
T Consensus       137 y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  137 YQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             EEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence            433221 22333444555566677777766544433

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=89.44  E-value=16  Score=32.95  Aligned_cols=109  Identities=25%  Similarity=0.285  Sum_probs=62.9

Q ss_pred             CceEEEEccCCCeEEEEecCC------eEEEEEecccccceeecceeccceee----ecccccCcEEEEEECCCCCEEEE
Q 015490          115 LPYRMAIHPHGDGIICALQNS------CRLFEWDEVENTEIRRLGVKISEKVL----SQLENVGQQLALTFDSEGTIFAA  184 (406)
Q Consensus       115 ~v~~~~~sp~~~~l~~~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~~  184 (406)
                      ..-+|++.++|.++++. .+.      -+|+.++.. +.....+.++......    .........-+++++|||+.|++
T Consensus        86 D~Egi~~~~~g~~~is~-E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~  163 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISS-EGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFA  163 (326)
T ss_pred             ChhHeEEecCCCEEEEe-CCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEE
Confidence            34488886676655544 555      688888866 5555555443221111    33445577899999999996666


Q ss_pred             eeC-----CC---------eEEEE--eCCC-cce----Eeeeec-----cCCceeEEEEccCCCEEE
Q 015490          185 GSE-----NG---------NLRVF--KWPS-LEI----ILNESE-----AHASVKDLSFSPDGKFLV  225 (406)
Q Consensus       185 ~~~-----dg---------~i~vw--d~~~-~~~----~~~~~~-----~~~~i~~~~~s~~~~~l~  225 (406)
                      +.+     |+         .++++  |..+ ++.    ...+..     ....|..+.+.+++++|+
T Consensus       164 ~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLv  230 (326)
T PF13449_consen  164 AMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLV  230 (326)
T ss_pred             EECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEE
Confidence            533     22         14454  4433 211    222221     233788899998888554

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=89.19  E-value=3.9  Score=32.90  Aligned_cols=36  Identities=11%  Similarity=0.103  Sum_probs=23.7

Q ss_pred             eEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC
Q 015490          254 LFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT  289 (406)
Q Consensus       254 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~  289 (406)
                      .+..++|||.|-....-.+++.-..++.|.+|....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            678999999664322223445556788898887653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=89.17  E-value=18  Score=33.15  Aligned_cols=196  Identities=16%  Similarity=0.157  Sum_probs=106.6

Q ss_pred             CCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEc----cCCCE--EEEEeC-C---CCEEEEEcC--CCeeee
Q 015490          178 EGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFS----PDGKF--LVSLGN-R---GPGRVWDLA--SSAVAT  245 (406)
Q Consensus       178 ~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s----~~~~~--l~s~s~-d---~~i~iwd~~--~~~~~~  245 (406)
                      ...+++....++-+.+||++ |+.+..+..  +.++.+..-    -+|+.  |+.++. +   .+|++|.+.  ++. +.
T Consensus        67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~  142 (381)
T PF02333_consen   67 AKSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LT  142 (381)
T ss_dssp             GG-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EE
T ss_pred             ccceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ce
Confidence            34577777888899999985 455555532  233333321    13443  445543 2   469999775  333 22


Q ss_pred             ecccC------CcceEEEEEEE--cCCCCceEEEEEEEcCCCcEEEEEeCC---Cc----eEEEEeeecCCCeEEEEEcC
Q 015490          246 PLAKE------NDELFASCRFS--PLNNEDYVLYIAAITDRGASIVTWNTT---TW----KRIRTKQVVREPVSSFNVSA  310 (406)
Q Consensus       246 ~~~~~------~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~i~~~d~~---~~----~~~~~~~~~~~~i~~~~~sp  310 (406)
                      .+...      .-..++.+++-  +....   ++.++ .+.+|.+..|.+.   .+    +.++++... ..+..+....
T Consensus       143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~---~ya~v-~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~-sQ~EGCVVDD  217 (381)
T PF02333_consen  143 DVTDPAAPIATDLSEPYGLCLYRSPSTGA---LYAFV-NGKDGRVEQYELTDDGDGKVSATLVREFKVG-SQPEGCVVDD  217 (381)
T ss_dssp             E-CBTTC-EE-SSSSEEEEEEEE-TTT-----EEEEE-EETTSEEEEEEEEE-TTSSEEEEEEEEEE-S-S-EEEEEEET
T ss_pred             EcCCCCcccccccccceeeEEeecCCCCc---EEEEE-ecCCceEEEEEEEeCCCCcEeeEEEEEecCC-CcceEEEEec
Confidence            22211      11124455553  33222   33333 3456878777653   32    457777764 5788999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCC-----ceEEEEeec-ccccceEEEEEc--CCC-CeEEEEE-CCCcEEEEEecCC-cCCC
Q 015490          311 DGKLLAVGTASGDISIIDSSS-----LQVRTAVKK-AHLGIVTALAFS--YDS-RALVSAS-MDSSVRVTVIEDK-KKSG  379 (406)
Q Consensus       311 ~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~-~~~~~v~~~~~s--p~~-~~l~s~s-~dg~i~iw~~~~~-~~~~  379 (406)
                      ...+|+.+-++.-|+-|+.+.     ++.+..... .....|-.|+.-  .++ .||+..+ .+++..||+.+.. ..++
T Consensus       218 e~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g  297 (381)
T PF02333_consen  218 ETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVG  297 (381)
T ss_dssp             TTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEE
T ss_pred             ccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccc
Confidence            889999999998888888862     222222211 234557777764  343 3555444 5678999998753 3345


Q ss_pred             Cch
Q 015490          380 GLN  382 (406)
Q Consensus       380 ~~~  382 (406)
                      .|.
T Consensus       298 ~f~  300 (381)
T PF02333_consen  298 SFR  300 (381)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            554

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=89.17  E-value=0.26  Score=45.26  Aligned_cols=205  Identities=10%  Similarity=0.111  Sum_probs=107.3

Q ss_pred             CCCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCe
Q 015490          113 SDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGN  190 (406)
Q Consensus       113 ~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  190 (406)
                      ++....|+|.-+++.++...  .+.+.+|+.+.....+.             .+.+...-.-+.|++.+..++.+...|.
T Consensus        74 tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL-------------E~gg~~s~sll~wsKg~~el~ig~~~gn  140 (615)
T KOG2247|consen   74 TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL-------------ESGGTSSKSLLAWSKGTPELVIGNNAGN  140 (615)
T ss_pred             chhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH-------------hccCcchHHHHhhccCCccccccccccc
Confidence            45567788888888777665  55555655543321111             1112222223689999999999999999


Q ss_pred             EEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeee-ecccC-CcceEEEEEEEcCCCCce
Q 015490          191 LRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT-PLAKE-NDELFASCRFSPLNNEDY  268 (406)
Q Consensus       191 i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~  268 (406)
                      +.|++..+.+.....-.|...+.+++|.+.+. .+.++.|..+.+-...+..... ...+. .......+.....++-..
T Consensus       141 ~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L~v~~qegeta~ltevggepdnm~~~y~k~n~w~kage  219 (615)
T KOG2247|consen  141 IVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTLSVTTQEGETASLTEVGGEPDNMDFFYGKVNGWGKAGE  219 (615)
T ss_pred             eEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHHHHHhhhccceeeeeeccCccchhhhheeeeeccccccc
Confidence            99999888777655544777899999999775 5556656544433322211111 11000 000011122211111100


Q ss_pred             EEEEEEEcCCCcEEEE---EeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEE
Q 015490          269 VLYIAAITDRGASIVT---WNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVR  335 (406)
Q Consensus       269 ~l~~~~~~~~~~~i~~---~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~  335 (406)
                      .+.-+.++  ...+..   -..+....+ .++...+.+.|+.|--||. |..+..-|.|..-++.+++..
T Consensus       220 ~m~sVvsg--Kkhl~yak~nE~D~pval-~fq~~~gni~cyrwylDg~-i~igf~ag~iV~iS~h~aeLg  285 (615)
T KOG2247|consen  220 TMVSVVSG--KKHLMYAKYNELDEPVAL-QFQEKYGNIHCYRWYLDGY-ILIGFDAGYIVSISAHNAELG  285 (615)
T ss_pred             eeeeeeec--HHHHHHHhhcCCCCccce-EeeecCCceeEEEEecccc-ccccccceeEEEEeccchHHH
Confidence            11111110  111100   011111222 5555567788999888874 555666666766666665543

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=88.67  E-value=20  Score=33.08  Aligned_cols=53  Identities=11%  Similarity=0.228  Sum_probs=26.0

Q ss_pred             CCCEEEEeeCC-----------CeEEEEeCCCcceEeeeeccCCcee-EEEEc-cCCCEEEEEeCC
Q 015490          178 EGTIFAAGSEN-----------GNLRVFKWPSLEIILNESEAHASVK-DLSFS-PDGKFLVSLGNR  230 (406)
Q Consensus       178 ~g~~l~~~~~d-----------g~i~vwd~~~~~~~~~~~~~~~~i~-~~~~s-~~~~~l~s~s~d  230 (406)
                      ++.+++.|+.+           ..+..||..+.+-...-........ ..+.. -+++..+.|+.+
T Consensus        84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~  149 (376)
T PRK14131         84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN  149 (376)
T ss_pred             CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence            56677777653           2477888776543322111111111 11222 366767777653

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=88.36  E-value=9.3  Score=28.94  Aligned_cols=116  Identities=14%  Similarity=0.091  Sum_probs=60.8

Q ss_pred             EEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECC-----CCCEEEEeeCCCeEE
Q 015490          119 MAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDS-----EGTIFAAGSENGNLR  192 (406)
Q Consensus       119 ~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~g~~l~~~~~dg~i~  192 (406)
                      -.|......|+++. .+.+-|+.-.........      ....++.+.-...|++++-.+     +...|+.|+. ..+.
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~------~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~ll   76 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGR------QDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLL   76 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCcccccccc------ccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEE
Confidence            34544555666665 454444432222111100      222344455556677765433     3367777765 5799


Q ss_pred             EEeCCCcceEeeeeccCCceeEEEEc---cCCCEEEEEeCCCCEEEEEcCCCe
Q 015490          193 VFKWPSLEIILNESEAHASVKDLSFS---PDGKFLVSLGNRGPGRVWDLASSA  242 (406)
Q Consensus       193 vwd~~~~~~~~~~~~~~~~i~~~~~s---~~~~~l~s~s~d~~i~iwd~~~~~  242 (406)
                      .||+.....+.. ..-.+.|+++.+-   ....-++..+.+..|.-||....+
T Consensus        77 aYDV~~N~d~Fy-ke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e  128 (136)
T PF14781_consen   77 AYDVENNSDLFY-KEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE  128 (136)
T ss_pred             EEEcccCchhhh-hhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence            999987665532 3334567777662   222234555556677777765433

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=88.24  E-value=33  Score=35.13  Aligned_cols=139  Identities=12%  Similarity=0.123  Sum_probs=78.6

Q ss_pred             CccccceeEEecC---CCCceEEEEccCCC-eEEEEe-cCCeEEEEEecccccceeec--ceeccceeeecccccCcEEE
Q 015490          100 SLSDQPVAELRTD---SDLPYRMAIHPHGD-GIICAL-QNSCRLFEWDEVENTEIRRL--GVKISEKVLSQLENVGQQLA  172 (406)
Q Consensus       100 ~~~~~~~~~~~~h---~~~v~~~~~sp~~~-~l~~~~-~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~  172 (406)
                      .+...++..+..+   ..+...++|+|... .+|+.. .|...||++..........+  .....+.........+.-..
T Consensus       129 ~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~r  208 (765)
T PF10214_consen  129 RIDPNPLLTISSSDTGGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKR  208 (765)
T ss_pred             ccccceeEEechhhcCCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCccee
Confidence            4555677777633   34677999998654 555554 77888888721111111111  11111111011112245568


Q ss_pred             EEECCCCCEEEEeeCCCeEEEEeCCCcceEeee--eccCCceeEEEEccCCC-EEEEEeCCCCEEEEEcCC
Q 015490          173 LTFDSEGTIFAAGSENGNLRVFKWPSLEIILNE--SEAHASVKDLSFSPDGK-FLVSLGNRGPGRVWDLAS  240 (406)
Q Consensus       173 ~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~--~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~iwd~~~  240 (406)
                      +.|.++-+.|++++. ..+.++|+++......+  ......|.++.-+++.. +++..+ ...|...++..
T Consensus       209 I~W~~~~~~lLv~~r-~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~  277 (765)
T PF10214_consen  209 ILWVSDSNRLLVCNR-SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS  277 (765)
T ss_pred             eEecCCCCEEEEEcC-CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence            899988888877765 57899999877653312  22334888998888722 222222 24677777766

These proteins are found in fungi.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=88.12  E-value=21  Score=32.77  Aligned_cols=155  Identities=10%  Similarity=0.080  Sum_probs=82.8

Q ss_pred             CCCEEEEeeCCCeEEEEeCCCcceEeeeeccC-CceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCC--cce
Q 015490          178 EGTIFAAGSENGNLRVFKWPSLEIILNESEAH-ASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKEN--DEL  254 (406)
Q Consensus       178 ~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~--~~~  254 (406)
                      +|+ ++.++.+|.+..+|..+|+......... ..+..-..-.++ .+...+.++.+.-.|..+++..-......  ...
T Consensus       111 ~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~  188 (370)
T COG1520         111 DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLS  188 (370)
T ss_pred             CCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccc
Confidence            666 6677888999999988898877665554 111111222233 34444467888888888777655433221  110


Q ss_pred             EEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC----CCeEEEEEcCC-----CCEEEEEeCCCcEE
Q 015490          255 FASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR----EPVSSFNVSAD-----GKLLAVGTASGDIS  325 (406)
Q Consensus       255 ~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~----~~i~~~~~sp~-----~~~l~~~~~dg~i~  325 (406)
                      +..-....++    .+++...+. ++.+.-.|..++........+.    ..+........     +.-++.++.++.+.
T Consensus       189 ~~~~~~~~~~----~vy~~~~~~-~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~  263 (370)
T COG1520         189 IYGSPAIASG----TVYVGSDGY-DGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLL  263 (370)
T ss_pred             cccCceeecc----eEEEecCCC-cceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEE
Confidence            1000011122    122221111 5577778888877766543221    11100111111     12335666778888


Q ss_pred             EEECCCceEEEEee
Q 015490          326 IIDSSSLQVRTAVK  339 (406)
Q Consensus       326 i~d~~~~~~~~~~~  339 (406)
                      ..|..+++.+-...
T Consensus       264 ~l~~~~G~~~W~~~  277 (370)
T COG1520         264 CLDADTGELIWSFP  277 (370)
T ss_pred             EEEcCCCceEEEEe
Confidence            89999998887775

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=88.07  E-value=21  Score=32.75  Aligned_cols=152  Identities=14%  Similarity=0.077  Sum_probs=83.6

Q ss_pred             CCCEEEEeeCCCeEEEEeCCCcceEeeeeccC--CceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceE
Q 015490          178 EGTIFAAGSENGNLRVFKWPSLEIILNESEAH--ASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELF  255 (406)
Q Consensus       178 ~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~  255 (406)
                      +|+ ++++..+|.|.-.|.+++..+.......  ..+..-....+|+ ++.++.++.++.+|.++|+..-.........+
T Consensus        68 dg~-v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~  145 (370)
T COG1520          68 DGT-VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY  145 (370)
T ss_pred             CCe-EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence            443 4455778888888888887654333221  2233333333665 77788888899999988887766654431011


Q ss_pred             EEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEc--CCCCEEEEEeC--CCcEEEEECCC
Q 015490          256 ASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVS--ADGKLLAVGTA--SGDISIIDSSS  331 (406)
Q Consensus       256 ~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~s--p~~~~l~~~~~--dg~i~i~d~~~  331 (406)
                      .....-.++.       +...+.++.+...|..+++..-........-.....+  .....++.+..  ++.+.-.|..+
T Consensus       146 ~~~~v~~~~~-------v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~  218 (370)
T COG1520         146 ASPPVVGDGT-------VYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAED  218 (370)
T ss_pred             ecCcEEcCcE-------EEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccC
Confidence            1122222222       2222367888888888888765544321100001111  12234444444  55677777777


Q ss_pred             ceEEEEe
Q 015490          332 LQVRTAV  338 (406)
Q Consensus       332 ~~~~~~~  338 (406)
                      +......
T Consensus       219 G~~~w~~  225 (370)
T COG1520         219 GTLKWSQ  225 (370)
T ss_pred             CcEeeee
Confidence            7766553

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=88.04  E-value=17  Score=31.64  Aligned_cols=155  Identities=14%  Similarity=0.107  Sum_probs=90.9

Q ss_pred             cCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCc-ceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEe
Q 015490          208 AHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKEND-ELFASCRFSPLNNEDYVLYIAAITDRGASIVTWN  286 (406)
Q Consensus       208 ~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d  286 (406)
                      ..+-+.++.++.  ++...+..+.-++|.|+.+......+..-.. ..-.+  |.-.|+.   .|+   .+-+..+.++|
T Consensus        85 ~~~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyayg--v~vsGn~---aYV---adlddgfLivd  154 (370)
T COG5276          85 ARDLFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYG--VYVSGNY---AYV---ADLDDGFLIVD  154 (370)
T ss_pred             hhhhhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEE--EEecCCE---EEE---eeccCcEEEEE
Confidence            344567788874  4777777888899999987655443332222 22233  3334442   222   23345566777


Q ss_pred             CCCc---eEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecc-cccceEEEEEcCCCCeEEEEE
Q 015490          287 TTTW---KRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKA-HLGIVTALAFSYDSRALVSAS  362 (406)
Q Consensus       287 ~~~~---~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~s~s  362 (406)
                      +.+.   ....+..........++.|  |++-..+..|+-+.+.|+.+......+..- ....+.++..+++--+++.. 
T Consensus       155 vsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy-  231 (370)
T COG5276         155 VSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY-  231 (370)
T ss_pred             CCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc-
Confidence            6543   3344444444445677777  778888888999999999765433332211 22367888888775555443 


Q ss_pred             CCCcEEEEEecCCc
Q 015490          363 MDSSVRVTVIEDKK  376 (406)
Q Consensus       363 ~dg~i~iw~~~~~~  376 (406)
                       +--+.+-|..+.+
T Consensus       232 -~egvlivd~s~~s  244 (370)
T COG5276         232 -DEGVLIVDVSGPS  244 (370)
T ss_pred             -ccceEEEecCCCC
Confidence             3346666665544

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=87.66  E-value=25  Score=33.15  Aligned_cols=54  Identities=15%  Similarity=0.298  Sum_probs=36.7

Q ss_pred             CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcce--Eeeee-----ccCCceeEEEEccCC
Q 015490          168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEI--ILNES-----EAHASVKDLSFSPDG  221 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~--~~~~~-----~~~~~i~~~~~s~~~  221 (406)
                      .....++|.|||++|++--..|.|++++-.++..  +..+.     ........|+++|+-
T Consensus        30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            4567899999998887754469999998654432  11111     124478999999873

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=87.52  E-value=13  Score=37.19  Aligned_cols=63  Identities=14%  Similarity=0.246  Sum_probs=33.6

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEecc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEV  144 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~  144 (406)
                      ..+.++++|-|.+++-|......         .+.++.+..+.+|  .|.+++.+.+-..+++ -++.  ||.|-.+
T Consensus       194 ~kgqvY~cGhG~GGRlG~gdeq~---------~~iPkrV~gL~gh--~~~qisvs~~HslvLT-~~g~--Vys~GlN  256 (1267)
T KOG0783|consen  194 EKGQVYVCGHGAGGRLGFGDEQY---------NFIPKRVPGLIGH--KVIQISVSHTHSLVLT-KFGS--VYSWGLN  256 (1267)
T ss_pred             CCCcEEEeccCCCCccCcCcccc---------ccccccccccccc--ceEEEEeecceeEEEe-ecce--EEEeecC
Confidence            34457888877777777642211         1222334445555  4677777776554443 2444  4444443

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=87.49  E-value=9.8  Score=31.25  Aligned_cols=149  Identities=15%  Similarity=0.142  Sum_probs=78.3

Q ss_pred             CCCEEEEEeC--CCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEee
Q 015490          220 DGKFLVSLGN--RGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQ  297 (406)
Q Consensus       220 ~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~  297 (406)
                      +|.++.+.+.  ...|++||+++++.+........ .+-.--...-+..   ++  ...-.++....+|.++.+++..+.
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~-~~FgEGit~~gd~---~y--~LTw~egvaf~~d~~t~~~lg~~~  128 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPD-TVFGEGITKLGDY---FY--QLTWKEGVAFKYDADTLEELGRFS  128 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCc-cccccceeeccce---EE--EEEeccceeEEEChHHhhhhcccc
Confidence            4556666654  34699999999988765543311 1111111112222   12  222457888899999988877776


Q ss_pred             ecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeec----ccccceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490          298 VVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKK----AHLGIVTALAFSYDSRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       298 ~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~  373 (406)
                      -. +.=..++  .|++.|..+....+++.-|.++.....++.-    ..-..++.+.|- ||...+-.=.+..|..-+.+
T Consensus       129 y~-GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~  204 (262)
T COG3823         129 YE-GEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPD  204 (262)
T ss_pred             cC-Ccceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCC
Confidence            44 3334555  3455566666666777777766544333321    111123344443 34444443344444444555


Q ss_pred             CCcCC
Q 015490          374 DKKKS  378 (406)
Q Consensus       374 ~~~~~  378 (406)
                      +|+.+
T Consensus       205 sGrV~  209 (262)
T COG3823         205 SGRVV  209 (262)
T ss_pred             CCcEE
Confidence            55443

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=87.36  E-value=20  Score=31.61  Aligned_cols=171  Identities=13%  Similarity=0.115  Sum_probs=84.6

Q ss_pred             eEEEEeCCCcceEeeeecc------CCceeEEEEccCC----CEEEEEe--CCCCEEEEEcCCCeeeeecccCC------
Q 015490          190 NLRVFKWPSLEIILNESEA------HASVKDLSFSPDG----KFLVSLG--NRGPGRVWDLASSAVATPLAKEN------  251 (406)
Q Consensus       190 ~i~vwd~~~~~~~~~~~~~------~~~i~~~~~s~~~----~~l~s~s--~d~~i~iwd~~~~~~~~~~~~~~------  251 (406)
                      .|.+||+.+++.++.+.-.      .+.+.++.+....    ..+|..+  ..+.|.|+|+.+++.-+.+....      
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            5666777777665554322      3367777776522    1334333  34589999999987655443211      


Q ss_pred             ------------cceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeC---CCc---------eEEEEeeecCCCeEEEE
Q 015490          252 ------------DELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNT---TTW---------KRIRTKQVVREPVSSFN  307 (406)
Q Consensus       252 ------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~---~~~---------~~~~~~~~~~~~i~~~~  307 (406)
                                  ...+..++.+|.......+|....+  ...++-...   +..         ..+..+-........++
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~ls--s~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~  192 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLS--SRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMA  192 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT---SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEE
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCC--CCcEEEEEHHHhhCccccccccccccceeccccCCCCceEE
Confidence                        0113344444422111123322211  111111111   110         01122211123566788


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCce---EEEEee-ccc-ccceEEEEEcC--CCCeEEEEE
Q 015490          308 VSADGKLLAVGTASGDISIIDSSSLQ---VRTAVK-KAH-LGIVTALAFSY--DSRALVSAS  362 (406)
Q Consensus       308 ~sp~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~-~~~-~~~v~~~~~sp--~~~~l~s~s  362 (406)
                      ++++|.+.++--..+.|..|+..+.-   ....+. ... -..+.++.+.+  +|.+.+...
T Consensus       193 ~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn  254 (287)
T PF03022_consen  193 IDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN  254 (287)
T ss_dssp             EETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred             ECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence            99999888888889999999988611   111221 122 35678999998  777666553

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=86.99  E-value=3.3  Score=38.02  Aligned_cols=169  Identities=14%  Similarity=-0.002  Sum_probs=92.8

Q ss_pred             eeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEE-EEEECCCCCEEEE
Q 015490          106 VAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQL-ALTFDSEGTIFAA  184 (406)
Q Consensus       106 ~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~g~~l~~  184 (406)
                      +..+..-...|..+-..|||+.+..-....+.++.++...-+..+..+..+. ...      ..|+ .+..-..|..+.+
T Consensus       213 i~~L~~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg-~~~------~~Vte~l~lL~Gg~SLLv  285 (733)
T COG4590         213 IRLLSVPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPG-DSR------HQVTEQLYLLSGGFSLLV  285 (733)
T ss_pred             hhhcCCCccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCC-chH------HHHHHHHHHHhCceeEEE
Confidence            3335555677888899999999988877888888887654332222111111 000      1111 1122234556777


Q ss_pred             eeCCCeEEEE-eCCCc-ce----EeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEE
Q 015490          185 GSENGNLRVF-KWPSL-EI----ILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASC  258 (406)
Q Consensus       185 ~~~dg~i~vw-d~~~~-~~----~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  258 (406)
                      ++.||.|.-| |++.+ ..    ++.+.-...++..+.-..+.+-+++-+..|++.++...+.+.+..-....  ....+
T Consensus       286 ~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~--~~~~~  363 (733)
T COG4590         286 VHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQ--APQLV  363 (733)
T ss_pred             EcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhc--Cccee
Confidence            8888888877 44332 21    11111111233333222234457777888888887765544433222111  24468


Q ss_pred             EEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc
Q 015490          259 RFSPLNNEDYVLYIAAITDRGASIVTWNTTTW  290 (406)
Q Consensus       259 ~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~  290 (406)
                      +++|.+.+     ++  ..+.+.++++.+++.
T Consensus       364 ~~Sp~~~~-----Ll--~e~~gki~~~~l~Nr  388 (733)
T COG4590         364 AMSPNQAY-----LL--SEDQGKIRLAQLENR  388 (733)
T ss_pred             eeCcccch-----he--eecCCceEEEEecCC
Confidence            89999885     22  245677888777653

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.90  E-value=17  Score=38.17  Aligned_cols=31  Identities=26%  Similarity=0.588  Sum_probs=26.0

Q ss_pred             CcEEEEEECCCCCEEEEeeCCCeEEEEeCCC
Q 015490          168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPS  198 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~  198 (406)
                      .....++|+|.-+++|.+...|.|++|-...
T Consensus        36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~   66 (993)
T KOG1983|consen   36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPG   66 (993)
T ss_pred             CCCcceeeccccceEEEEEecccEEEecccc
Confidence            3456789999999999999999999998543

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.39  E-value=19  Score=37.98  Aligned_cols=141  Identities=13%  Similarity=0.122  Sum_probs=77.6

Q ss_pred             EeCCCCEEEEEcCCCeeeeecccCCcceEEEEE-------EEcCCCCceEEEEEEEcCCCcEEEEEeC----CCceE---
Q 015490          227 LGNRGPGRVWDLASSAVATPLAKENDELFASCR-------FSPLNNEDYVLYIAAITDRGASIVTWNT----TTWKR---  292 (406)
Q Consensus       227 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~i~~~d~----~~~~~---  292 (406)
                      .+.|+.+.+|+.+++.....+.......+.-.-       |-|.=++   ++++++   --.|.++-+    .++..   
T Consensus        95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~Iqh---lLvvaT---~~ei~ilgV~~~~~~~~~~~f  168 (1311)
T KOG1900|consen   95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQH---LLVVAT---PVEIVILGVSFDEFTGELSIF  168 (1311)
T ss_pred             EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhhe---eEEecc---cceEEEEEEEeccccCccccc
Confidence            456889999999987666655443322221111       2222232   222222   223333322    11111   


Q ss_pred             --EEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEE--EECCCc---e---E--------------EEEeecccccceEE
Q 015490          293 --IRTKQVVREPVSSFNVSADGKLLAVGTASGDISI--IDSSSL---Q---V--------------RTAVKKAHLGIVTA  348 (406)
Q Consensus       293 --~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i--~d~~~~---~---~--------------~~~~~~~~~~~v~~  348 (406)
                        ...+......|.++....+|+.+++| .||.|+=  |....+   +   .              +..+...+..+|..
T Consensus       169 ~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~q  247 (1311)
T KOG1900|consen  169 NTSFKISVDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQ  247 (1311)
T ss_pred             ccceeeecCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCccee
Confidence              11222234568888877888766665 4554432  222211   1   0              00111245678999


Q ss_pred             EEEcCCCCeEEEEECCCcEEEEEecC
Q 015490          349 LAFSYDSRALVSASMDSSVRVTVIED  374 (406)
Q Consensus       349 ~~~sp~~~~l~s~s~dg~i~iw~~~~  374 (406)
                      +.....-..+.+-+..|+|.+|++..
T Consensus       248 i~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  248 ITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             eEeccccceeeeeccCceEEEEEccC
Confidence            99988888889999999999999976

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=86.06  E-value=4  Score=39.78  Aligned_cols=71  Identities=18%  Similarity=0.293  Sum_probs=43.7

Q ss_pred             CCCCEEEEeeCCCeEEEEeCCC----cceEee-eec---------------------cCCceeEEEEcc----CCCEEEE
Q 015490          177 SEGTIFAAGSENGNLRVFKWPS----LEIILN-ESE---------------------AHASVKDLSFSP----DGKFLVS  226 (406)
Q Consensus       177 ~~g~~l~~~~~dg~i~vwd~~~----~~~~~~-~~~---------------------~~~~i~~~~~s~----~~~~l~s  226 (406)
                      ++...++.+..||.+.......    +..... ...                     .......++.+.    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            4666788888899888887653    111110 000                     012345566655    6779999


Q ss_pred             EeCCCCEEEEEcCCCeeeeec
Q 015490          227 LGNRGPGRVWDLASSAVATPL  247 (406)
Q Consensus       227 ~s~d~~i~iwd~~~~~~~~~~  247 (406)
                      .+.|+++|+||+.+++++...
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999985543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=86.03  E-value=37  Score=33.49  Aligned_cols=164  Identities=12%  Similarity=0.194  Sum_probs=87.3

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc--eEeeeeccCC--ceeEEEEcc------CCCEEEEEeC-C---C
Q 015490          166 NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLE--IILNESEAHA--SVKDLSFSP------DGKFLVSLGN-R---G  231 (406)
Q Consensus       166 ~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~--~i~~~~~s~------~~~~l~s~s~-d---~  231 (406)
                      -...+..+.|.++++.+++...+|.|.+||...+.  .+..+...+.  -+.+ .|-+      ...++++.+. +   -
T Consensus       128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~  206 (670)
T PF10395_consen  128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSKL  206 (670)
T ss_pred             cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccccCCceEEEEEEcCCCcE
Confidence            45778899999999999999999999999993322  1111211111  1111 2211      2334444443 2   2


Q ss_pred             CEEEEEcC-CCeeeeecc--cCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC------CC
Q 015490          232 PGRVWDLA-SSAVATPLA--KENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR------EP  302 (406)
Q Consensus       232 ~i~iwd~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~------~~  302 (406)
                      ..+++.+. .......+.  ..+........|+-....   +|.+    .++.|.+|++.+.+...++....      ..
T Consensus       207 ~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~---LY~l----~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~  279 (670)
T PF10395_consen  207 SYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGK---LYQL----SKKTISSYSIPNFQIQKTISLPSIIDKESDD  279 (670)
T ss_pred             EEEEEEeccCCcceEEeehheeccCCcccceEEEeCCE---EEEE----eCCEEEEEEcCCceEEEEEEechhhcccccc
Confidence            45677771 112222221  011111223333333322   4444    47899999998887777765541      12


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEee
Q 015490          303 VSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVK  339 (406)
Q Consensus       303 i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  339 (406)
                      +.++. .|..+.++.+ .++.|++.|+.-...+..+.
T Consensus       280 ~vSl~-~~s~nRvLLs-~~nkIyLld~~~~siLse~~  314 (670)
T PF10395_consen  280 LVSLK-PPSPNRVLLS-VNNKIYLLDLKFESILSEFE  314 (670)
T ss_pred             ceEee-cCCCCeEEEE-cCCEEEEEeehhhhhhhhhh
Confidence            33333 2333344443 46789999987555554443

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=85.83  E-value=31  Score=32.37  Aligned_cols=30  Identities=20%  Similarity=0.222  Sum_probs=25.1

Q ss_pred             ceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490          345 IVTALAFSYDSRALVSASMDSSVRVTVIED  374 (406)
Q Consensus       345 ~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~  374 (406)
                      .|.++...+..+.|++.+.+|.|.+|++..
T Consensus       191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            388999988889999999999999999975

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=85.75  E-value=26  Score=31.42  Aligned_cols=65  Identities=15%  Similarity=0.213  Sum_probs=33.0

Q ss_pred             CCCEEEEeeCC-----CeEEEEeCCCcceE---eeeeccCCce--eEEEEccCCCEEEEEeC-----CCCEEEEEcCCCe
Q 015490          178 EGTIFAAGSEN-----GNLRVFKWPSLEII---LNESEAHASV--KDLSFSPDGKFLVSLGN-----RGPGRVWDLASSA  242 (406)
Q Consensus       178 ~g~~l~~~~~d-----g~i~vwd~~~~~~~---~~~~~~~~~i--~~~~~s~~~~~l~s~s~-----d~~i~iwd~~~~~  242 (406)
                      ++.+++.|+.+     ..+..||+.+.+..   ..+..-..+.  .+++. -+++..+.|+.     ...+..||+.+.+
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence            45666677654     35777777665431   1111111111  12222 24566666664     2357888987654


Q ss_pred             e
Q 015490          243 V  243 (406)
Q Consensus       243 ~  243 (406)
                      -
T Consensus       151 W  151 (323)
T TIGR03548       151 W  151 (323)
T ss_pred             e
Confidence            3

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

Probab=84.98  E-value=44  Score=33.31  Aligned_cols=167  Identities=18%  Similarity=0.245  Sum_probs=88.2

Q ss_pred             cccCcEEEEEECCCCCEEEEeeCCC----eEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCC
Q 015490          165 ENVGQQLALTFDSEGTIFAAGSENG----NLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLAS  240 (406)
Q Consensus       165 ~~~~~v~~~~~s~~g~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~  240 (406)
                      .....+..+.|+|+|..++..+.++    .+++.+.. +    .+......+....|+++++.++....++..+.    .
T Consensus        57 ~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~-g----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~----~  127 (620)
T COG1506          57 TFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVG-G----LITKTAFGVSDARWSPDGDRIAFLTAEGASKR----D  127 (620)
T ss_pred             ccCCcccccccCCCCCEEEEEeccCCCcceEEEEecC-C----ceeeeecccccceeCCCCCeEEEEeccccccc----C
Confidence            3456678889999999998877333    23344433 2    23333447888999999998887322221000    0


Q ss_pred             CeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC
Q 015490          241 SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA  320 (406)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~  320 (406)
                      +.  ..+.   ... ..+.|...+            .....+.+.|..+  ...........+....++++++.++....
T Consensus       128 ~~--~~~~---~~~-~~~~~~~~g------------~~~~~l~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (620)
T COG1506         128 GG--DHLF---VDR-LPVWFDGRG------------GERSDLYVVDIES--KLIKLGLGNLDVVSFATDGDGRLVASIRL  187 (620)
T ss_pred             Cc--eeee---ecc-cceeecCCC------------CcccceEEEccCc--ccccccCCCCceeeeeeCCCCceeEEeee
Confidence            00  0000   000 001111111            1344555666654  22333334456777777777777776554


Q ss_pred             CCc-------EEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEE
Q 015490          321 SGD-------ISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSAS  362 (406)
Q Consensus       321 dg~-------i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s  362 (406)
                      +..       ..++...++......  .....+..+.|.++|+.++..+
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~gk~~~~~~  234 (620)
T COG1506         188 DDDADPWVTNLYVLIEGNGELESLT--PGEGSISKLAFDADGKSIALLG  234 (620)
T ss_pred             ccccCCceEeeEEEecCCCceEEEc--CCCceeeeeeeCCCCCeeEEec
Confidence            332       233333344443333  3555688889999988555443

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=84.74  E-value=30  Score=31.19  Aligned_cols=156  Identities=17%  Similarity=0.223  Sum_probs=88.4

Q ss_pred             ceeEEEEccCCCEEEEEeCCCC------EEEEEcCC--C--eee-----eecccCCcc-------eEEEEEEEcCCCCce
Q 015490          211 SVKDLSFSPDGKFLVSLGNRGP------GRVWDLAS--S--AVA-----TPLAKENDE-------LFASCRFSPLNNEDY  268 (406)
Q Consensus       211 ~i~~~~~s~~~~~l~s~s~d~~------i~iwd~~~--~--~~~-----~~~~~~~~~-------~~~~~~~~~~~~~~~  268 (406)
                      .++.+.+.+++..+++.++++.      +..+++..  +  ..+     ..+....+.       -..++++.+++.   
T Consensus        21 GlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~---   97 (326)
T PF13449_consen   21 GLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS---   97 (326)
T ss_pred             cEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC---
Confidence            6788888876666777777777      65555543  1  000     111111111       234677866665   


Q ss_pred             EEEEEEEcCCC------cEEEEEeCCCceEEEEee---------------ecCCCeEEEEEcCCCCEEEEEeC-----CC
Q 015490          269 VLYIAAITDRG------ASIVTWNTTTWKRIRTKQ---------------VVREPVSSFNVSADGKLLAVGTA-----SG  322 (406)
Q Consensus       269 ~l~~~~~~~~~------~~i~~~d~~~~~~~~~~~---------------~~~~~i~~~~~sp~~~~l~~~~~-----dg  322 (406)
                         +..+...+      ..|+.++.. ++....+.               .......+|+++|+|+.|+++.+     |+
T Consensus        98 ---~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~  173 (326)
T PF13449_consen   98 ---FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDG  173 (326)
T ss_pred             ---EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCC
Confidence               33444556      788888876 55444331               12346789999999997766544     22


Q ss_pred             --c-------EEE--EECCC-ceEEEEe--ecc------cccceEEEEEcCCCCeEEEEE-----CCCcEEEEEec
Q 015490          323 --D-------ISI--IDSSS-LQVRTAV--KKA------HLGIVTALAFSYDSRALVSAS-----MDSSVRVTVIE  373 (406)
Q Consensus       323 --~-------i~i--~d~~~-~~~~~~~--~~~------~~~~v~~~~~sp~~~~l~s~s-----~dg~i~iw~~~  373 (406)
                        .       +++  ||..+ ++....+  ...      ....+..+.+-+++++|+-=-     ....++|+.+.
T Consensus       174 ~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~  249 (326)
T PF13449_consen  174 PRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD  249 (326)
T ss_pred             cccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence              1       444  45544 2222222  111      345688999999998776432     23456666554

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=84.48  E-value=27  Score=30.49  Aligned_cols=196  Identities=10%  Similarity=-0.008  Sum_probs=102.9

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeee-
Q 015490          166 NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVA-  244 (406)
Q Consensus       166 ~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~-  244 (406)
                      ..+-+..+.++.  ++...+..+.-++|.|+.+......+..-.-.=..-.|.-.|++..++..|.-+.+.|+.+.... 
T Consensus        85 ~~~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~  162 (370)
T COG5276          85 ARDLFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQ  162 (370)
T ss_pred             hhhhhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCce
Confidence            345566677765  46666667778999999776544322111110122334445888888887777888898764432 


Q ss_pred             --eecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCce---EEEEeeecCCCeEEEEEcCCCCEEEEEe
Q 015490          245 --TPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK---RIRTKQVVREPVSSFNVSADGKLLAVGT  319 (406)
Q Consensus       245 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~i~~~~~sp~~~~l~~~~  319 (406)
                        .+...... ....++.+-+..        .....++-+.+.|+....   .+.... ....+.++..+++..+++...
T Consensus       163 lagrya~~~~-d~~~v~ISGn~A--------YvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy~  232 (370)
T COG5276         163 LAGRYALPGG-DTHDVAISGNYA--------YVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVYD  232 (370)
T ss_pred             eeeeeccCCC-CceeEEEecCeE--------EEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEcc
Confidence              22222211 123444544322        222457778888886543   222222 223678888888766666543


Q ss_pred             CCCcEEEEECCCceEEEEeecccccceEEE-EEcCCCCeEEEEECCCcEEEEEecCC
Q 015490          320 ASGDISIIDSSSLQVRTAVKKAHLGIVTAL-AFSYDSRALVSASMDSSVRVTVIEDK  375 (406)
Q Consensus       320 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~-~~sp~~~~l~s~s~dg~i~iw~~~~~  375 (406)
                        --+.+-|..+.+....+-.-....+.++ .+.-.+++......+.-+.+-|++++
T Consensus       233 --egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp  287 (370)
T COG5276         233 --EGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNP  287 (370)
T ss_pred             --cceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCC
Confidence              3366677765543333221111112111 12222444444555555555555543

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=83.84  E-value=6.1  Score=22.56  Aligned_cols=35  Identities=20%  Similarity=0.037  Sum_probs=24.5

Q ss_pred             EEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEE
Q 015490          273 AAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNV  308 (406)
Q Consensus       273 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~  308 (406)
                      .++...++.|.++|..+++.+..+..... ...++|
T Consensus         7 yv~~~~~~~v~~id~~~~~~~~~i~vg~~-P~~i~~   41 (42)
T TIGR02276         7 YVTNSGSNTVSVIDTATNKVIATIPVGGY-PFGVAV   41 (42)
T ss_pred             EEEeCCCCEEEEEECCCCeEEEEEECCCC-CceEEe
Confidence            34456688999999999888887776433 345554

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=83.76  E-value=34  Score=31.04  Aligned_cols=53  Identities=9%  Similarity=0.168  Sum_probs=26.6

Q ss_pred             CCCEEEEeeCC-----------CeEEEEeCCCcceEeeeeccCCceeEE-EE-ccCCCEEEEEeCC
Q 015490          178 EGTIFAAGSEN-----------GNLRVFKWPSLEIILNESEAHASVKDL-SF-SPDGKFLVSLGNR  230 (406)
Q Consensus       178 ~g~~l~~~~~d-----------g~i~vwd~~~~~~~~~~~~~~~~i~~~-~~-s~~~~~l~s~s~d  230 (406)
                      ++++.+.|+.+           ..+..||..+.+-.............. +. .-+++..+.|+.+
T Consensus        63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~  128 (346)
T TIGR03547        63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN  128 (346)
T ss_pred             CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence            56777777653           247778877655332211111111111 11 2367777777653

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=82.43  E-value=33  Score=34.01  Aligned_cols=68  Identities=18%  Similarity=0.291  Sum_probs=43.4

Q ss_pred             CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEc
Q 015490          168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDL  238 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~  238 (406)
                      ..++++.-+|.|+.++.+..||.|++|++....... +.....+-..+.|...|  |+++..|..+.-|.-
T Consensus        15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk-i~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~~   82 (1636)
T KOG3616|consen   15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK-ICEEAKPKENLVFTNHG--LVTATSDRRALAWKE   82 (1636)
T ss_pred             ceeeeeeecCCCceEEEEecCCcEEEEeecccchhh-hhhhcCCccceeeeccc--eEEEeccchhheeec
Confidence            456778888999999999999999999986543321 11112233445554433  555666666666643

>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=82.18  E-value=12  Score=37.33  Aligned_cols=72  Identities=15%  Similarity=0.206  Sum_probs=49.0

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeecc---CCceeEEEEccCCCEEEEEeCCCCEEEEEcCCC
Q 015490          166 NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEA---HASVKDLSFSPDGKFLVSLGNRGPGRVWDLASS  241 (406)
Q Consensus       166 ~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~  241 (406)
                      +..+|...++..|   ++.++.+|.|.++...+.........|   ...|+++....++-+++.++.| .+++++.++.
T Consensus       625 g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~-~~rlfhtetl  699 (925)
T KOG3522|consen  625 GSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGD-EERLFHTETL  699 (925)
T ss_pred             CCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCC-EEEEeccccc
Confidence            4467777777755   556778999999998776555444333   3479999998777666666655 5666555443

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=80.91  E-value=15  Score=25.75  Aligned_cols=56  Identities=21%  Similarity=0.317  Sum_probs=0.0

Q ss_pred             EEEEEcCC-CCEEEE-----------------EeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEE
Q 015490          304 SSFNVSAD-GKLLAV-----------------GTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSA  361 (406)
Q Consensus       304 ~~~~~sp~-~~~l~~-----------------~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~  361 (406)
                      ..+++.++ |...++                 +..+|.+..||..+++....+.  .-...+.+++++|+.+|+.+
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~--~L~fpNGVals~d~~~vlv~   74 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLD--GLYFPNGVALSPDESFVLVA   74 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEE--EESSEEEEEE-TTSSEEEEE
T ss_pred             CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehh--CCCccCeEEEcCCCCEEEEE

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	406
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		3e-05
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		3e-05
2h9l_A	329	Wdr5delta23 Length = 329		3e-05
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		3e-05
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		3e-05
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		3e-05
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		3e-05
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-05
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		3e-05
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		4e-05
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		4e-05
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		4e-05
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		4e-05
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		4e-05
2gnq_A	336	Structure Of Wdr5 Length = 336		4e-05
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-04
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-04

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY 271
           + D+++S D   LVS  +    ++WD++S      L   ++ +F  C F+P +N    L 
Sbjct: 71  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSN----LI 125
Query: 272 IAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXX 331
           ++   D   S+  W+  T K ++T     +PVS+ + + DG L+   +            
Sbjct: 126 VSGSFDE--SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 332 LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
            Q    +       V+ + FS + + +++A++D+++++
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 221

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY 271
           + D+++S D   LVS  +    ++WD++S      L   ++ +F  C F+P +N    L 
Sbjct: 71  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSN----LI 125
Query: 272 IAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXX 331
           ++   D   S+  W+  T K ++T     +PVS+ + + DG L+   +            
Sbjct: 126 VSGSFDE--SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 332 LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
            Q    +       V+ + FS + + +++A++D+++++
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 221

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY 271
           + D+++S D   LVS  +    ++WD++S      L   ++ +F  C F+P +N    L 
Sbjct: 85  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSN----LI 139
Query: 272 IAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXX 331
           ++   D   S+  W+  T K ++T     +PVS+ + + DG L+   +            
Sbjct: 140 VSGSFDE--SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 197
Query: 332 LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
            Q    +       V+ + FS + + +++A++D+++++
Sbjct: 198 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 235

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY 271
           + D+++S D   LVS  +    ++WD++S      L   ++ +F  C F+P +N    L 
Sbjct: 71  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSN----LI 125
Query: 272 IAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXX 331
           ++   D   S+  W+  T K ++T     +PVS+ + + DG L+   +            
Sbjct: 126 VSGSFDE--SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 332 LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
            Q    +       V+ + FS + + +++A++D+++++
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 221

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY 271
           + D+++S D   LVS  +    ++WD++S      L   ++ +F  C F+P +N    L 
Sbjct: 74  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSN----LI 128
Query: 272 IAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXX 331
           ++   D   S+  W+  T K ++T     +PVS+ + + DG L+   +            
Sbjct: 129 VSGSFDE--SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 332 LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
            Q    +       V+ + FS + + +++A++D+++++
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 224

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY 271
           + D+++S D   LVS  +    ++WD++S      L   ++ +F  C F+P +N    L 
Sbjct: 67  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSN----LI 121
Query: 272 IAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXX 331
           ++   D   S+  W+  T K ++T     +PVS+ + + DG L+   +            
Sbjct: 122 VSGSFDE--SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 179
Query: 332 LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
            Q    +       V+ + FS + + +++A++D+++++
Sbjct: 180 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 217

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY 271
           + D+++S D   LVS  +    ++WD++S      L   ++ +F  C F+P +N    L 
Sbjct: 68  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSN----LI 122
Query: 272 IAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXX 331
           ++   D   S+  W+  T K ++T     +PVS+ + + DG L+   +            
Sbjct: 123 VSGSFDE--SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180
Query: 332 LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
            Q    +       V+ + FS + + +++A++D+++++
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 218

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY 271
           + D+++S D   LVS  +    ++WD++S      L   ++ +F  C F+P +N    L 
Sbjct: 64  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSN----LI 118
Query: 272 IAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXX 331
           ++   D   S+  W+  T K ++T     +PVS+ + + DG L+   +            
Sbjct: 119 VSGSFDE--SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 176
Query: 332 LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
            Q    +       V+ + FS + + +++A++D+++++
Sbjct: 177 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 214

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY 271
           + D+++S D   LVS  +    ++WD++S      L   ++ +F  C F+P +N    L 
Sbjct: 73  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSN----LI 127
Query: 272 IAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXX 331
           ++   D   S+  W+  T K ++T     +PVS+ + + DG L+   +            
Sbjct: 128 VSGSFDE--SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 185
Query: 332 LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
            Q    +       V+ + FS + + +++A++D+++++
Sbjct: 186 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 223

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY 271
           + D+++S D   LVS  +    ++WD++S      L   ++ +F  C F+P +N    L 
Sbjct: 69  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSN----LI 123
Query: 272 IAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXX 331
           ++   D   S+  W+  T K ++T     +PVS+ + + DG L+   +            
Sbjct: 124 VSGSFDE--SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 181
Query: 332 LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
            Q    +       V+ + FS + + +++A++D+++++
Sbjct: 182 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 219

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY 271
           + D+++S D   LVS  +    ++WD++S      L   ++ +F  C F+P +N    L 
Sbjct: 74  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSN----LI 128
Query: 272 IAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXX 331
           ++   D   S+  W+  T K ++T     +PVS+ + + DG L+   +            
Sbjct: 129 VSGSFDE--SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 332 LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
            Q    +       V+ + FS + + +++A++D+++++
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 224

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY 271
           + D+++S D   LVS  +    ++WD++S      L   ++ +F  C F+P +N    L 
Sbjct: 68  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSN----LI 122
Query: 272 IAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXX 331
           ++   D   S+  W+  T K ++T     +PVS+ + + DG L+   +            
Sbjct: 123 VSGSFDE--SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180
Query: 332 LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
            Q    +       V+ + FS + + +++A++D+++++
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 218

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY 271
           + D+++S D   LVS  +    ++WD++S      L   ++ +F  C F+P +N    L 
Sbjct: 74  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSN----LI 128
Query: 272 IAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXX 331
           ++   D   S+  W+  T K ++T     +PVS+ + + DG L+   +            
Sbjct: 129 VSGSFDE--SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 332 LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
            Q    +       V+ + FS + + +++A++D+++++
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 224

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY 271
           + D+++S D   LVS  +    ++WD++S      L   ++ +F  C F+P +N    L 
Sbjct: 90  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSN----LI 144
Query: 272 IAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXX 331
           ++   D   S+  W+  T K ++T     +PVS+ + + DG L+   +            
Sbjct: 145 VSGSFDE--SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 202
Query: 332 LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
            Q    +       V+ + FS + + +++A++D+++++
Sbjct: 203 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 240

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY 271
           + D+++S D   LVS  +    ++WD++S      L   ++ +F  C F+P +N    L 
Sbjct: 92  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSN----LI 146
Query: 272 IAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXX 331
           ++   D   S+  W+  T K ++T     +PVS+ + + DG L+   +            
Sbjct: 147 VSGSFDE--SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 204
Query: 332 LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
            Q    +       V+ + FS + + +++A++D+++++
Sbjct: 205 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 242

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/158 (20%), Positives = 74/158 (46%), Gaps = 7/158 (4%)
Query: 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY 271
           + D+++S D   LVS  +    ++WD++S      L   ++ +F  C F+P +N    L 
Sbjct: 71  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSN----LI 125
Query: 272 IAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXX 331
           ++   D   S+  W+  T   ++T     +PVS+ + + DG L+   +            
Sbjct: 126 VSGSFDE--SVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 332 LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
            Q    +       V+ + FS + + +++A++D+++++
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 221

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/158 (20%), Positives = 73/158 (46%), Gaps = 7/158 (4%)
Query: 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY 271
           + D+++S D   LVS  +    ++WD++S      L   ++ +F  C F+P +N    L 
Sbjct: 71  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSN----LI 125
Query: 272 IAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAXXXXXXXXXXX 331
           ++   D   S+  W+  T   ++T     +PVS+ + + DG L+   +            
Sbjct: 126 VSGSFDE--SVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 332 LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
            Q    +       V+ + FS + + +++A++D+ +++
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKL 221

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	406
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.98
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.98
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.96
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.94
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.94
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.94
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.93
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.93
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.93
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.92
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.92
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.92
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.91
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.91
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.91
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.91
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.9
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.9
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.9
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.9
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.9
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.89
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.89
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.87
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.86
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.86
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.85
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.85
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.85
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.84
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.83
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.83
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.82
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.82
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.81
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.81
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.81
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.8
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.8
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.79
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.79
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.79
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.77
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.77
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.77
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.74
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.73
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.73
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.72
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.71
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.71
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.7
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.7
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.69
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.69
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.69
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.69
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.68
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.67
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.67
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.65
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.65
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.65
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.65
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.64
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.64
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.64
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.64
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.62
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.61
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.61
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.6
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.59
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.56
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.56
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.56
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.55
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.54
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.53
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.52
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.48
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.47
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.47
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.46
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.42
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.39
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.38
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.38
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.38
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.36
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.35
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.31
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.3
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.3
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.29
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.28
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.27
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.27
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.26
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.23
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.22
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.19
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.16
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.15
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.14
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.13
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.1
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.1
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.05
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.05
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.04
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.04
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.99
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.97
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.97
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.93
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.93
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.93
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.91
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.9
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.88
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.86
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.85
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.82
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.82
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.82
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.81
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.81
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.8
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.79
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.72
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.72
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.71
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.71
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.71
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.69
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.69
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.66
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.64
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.63
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.62
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.62
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.58
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.58
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.56
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.55
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.54
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.53
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.49
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.48
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.48
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.47
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.34
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.26
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.22
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.19
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.19
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.16
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.13
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.13
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.1
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.08
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.08
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.04
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.99
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.99
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.97
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.97
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.95
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.9
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.9
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.89
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.88
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.78
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.73
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.67
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.61
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.59
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.56
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.48
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.46
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.46
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.26
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.25
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.24
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.21
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.2
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.16
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.16
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.11
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.09
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.07
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.03
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.02
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.02
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.97
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.91
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.8
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.74
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.67
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.59
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	96.59
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.41
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.34
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.28
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.27
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.23
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.19
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.18
3ott_A	758	Two-component system sensor histidine kinase; beta	96.17
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.44
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.28
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.1
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	94.82
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	93.83
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	93.34
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	92.72
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	92.06
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	91.33
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	90.32
3ott_A	758	Two-component system sensor histidine kinase; beta	89.98
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	89.74
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	85.66
2k1a_A	42	Integrin alpha-IIB; single-PASS transmembrane segm	83.99
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	82.16

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.5e-44  Score=329.67  Aligned_cols=319  Identities=20%  Similarity=0.260  Sum_probs=241.8

Q ss_pred             CCCCCCCCCCccceeeCCeeeeeecccccccccccCCCCCCCCCCchhhhccCCCcccccccccCCCCCcEEEEEcCCCC
Q 015490            1 MGSRSRNEESHNLQKYGVPLYGAGWVPYDQVIRSTHKPPKQQDDDDKEEDQHGSKDEAVADKSDDIRRNYYVVLAGGGGA   80 (406)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~p~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ggg~   80 (406)
                      ||+   +|-+....+.|+|||+++|.|                                         ++.++++||||.
T Consensus         1 m~~---m~~~~~~~~~g~PV~sv~fs~-----------------------------------------dg~~l~sGGg~~   36 (365)
T 4h5i_A            1 MAS---MKFVTASYNVGYPAYGAKFLN-----------------------------------------NDTLLVAGGGGE   36 (365)
T ss_dssp             ------CCCCEEEEECSSCEEEEEEEE-----------------------------------------TTEEEEEEECCS
T ss_pred             CCc---ccceeeecCCCCCEEEEEEeC-----------------------------------------CCcEEEEECCCc
Confidence            555   677888899999999999994                                         555677778888


Q ss_pred             CCCCcCccEEEEEEecCCCCccc----cceeEEecCCCCceEEEEccCCCeEEEEe------------cCCeEEEEEecc
Q 015490           81 GNSGIRNAVLLSHFDFASNSLSD----QPVAELRTDSDLPYRMAIHPHGDGIICAL------------QNSCRLFEWDEV  144 (406)
Q Consensus        81 ~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~h~~~v~~~~~sp~~~~l~~~~------------~~~~~i~~~~~~  144 (406)
                      .++|++|.+.++.++........    .....+.+|.+.|.+++++  +..++++.            ++.+++|.++..
T Consensus        37 ~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~  114 (365)
T 4h5i_A           37 GNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKV  114 (365)
T ss_dssp             SSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETT
T ss_pred             cccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCC
Confidence            89999999999999876543221    1223577899999998775  45666542            567888887754


Q ss_pred             cccceeecceeccceeeecccccCcEEEEEECCCCCEEEE--eeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCC
Q 015490          145 ENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAA--GSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGK  222 (406)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~--~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~  222 (406)
                      ....... .   .........+...+.+++|||||+++++  ++.|++|+|||+++++.+..+. |+..|.+++|+|||+
T Consensus       115 ~~~~~~~-~---~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~  189 (365)
T 4h5i_A          115 NDQLEFL-T---SVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGK  189 (365)
T ss_dssp             TTEEEEE-E---EECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSS
T ss_pred             CceEEEe-e---eeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCc
Confidence            3221110 0   0011111122356899999999998765  4578999999999999887764 667899999999999


Q ss_pred             EEEEEeCCCCEEEEEcCCCeeee-ecccCCcceEEEEEEEcCCCCceEEEEEEEcCC--CcEEEEEeCCCceE----EEE
Q 015490          223 FLVSLGNRGPGRVWDLASSAVAT-PLAKENDELFASCRFSPLNNEDYVLYIAAITDR--GASIVTWNTTTWKR----IRT  295 (406)
Q Consensus       223 ~l~s~s~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~i~~~d~~~~~~----~~~  295 (406)
                      ++++++.+ .+++|+..+++... .....+...+.+++|+|+++.    +++++.+.  ...+++||+.....    ...
T Consensus       190 ~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~----l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~  264 (365)
T 4h5i_A          190 VVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTV----LIAASLKKGKGIVLTKISIKSGNTSVLRSKQ  264 (365)
T ss_dssp             EEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEE----EEEEEESSSCCEEEEEEEEETTEEEEEEEEE
T ss_pred             eEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCE----EEEEecCCcceeEEeecccccceecceeeee
Confidence            99999855 67777777766554 344456677999999999984    22333222  23688899876543    345


Q ss_pred             eeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCC
Q 015490          296 KQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDK  375 (406)
Q Consensus       296 ~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~  375 (406)
                      +..|...|++++|+|||++||+|+.|++|+|||+++++++..+..+|..+|++++|+|||++|+|||.|++|+||++...
T Consensus       265 ~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          265 VTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             ecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            66788899999999999999999999999999999999998876689999999999999999999999999999999654

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.1e-42  Score=320.74  Aligned_cols=276  Identities=14%  Similarity=0.193  Sum_probs=233.9

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVEN  146 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~  146 (406)
                      ...+++.++..|          .+..|+...    .+....+.+|.+.|.+++|+|++++|++++ |+.+++|++..   
T Consensus       119 ~~~~l~s~s~Dg----------~i~vwd~~~----~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~---  181 (410)
T 1vyh_C          119 VFSVMVSASEDA----------TIKVWDYET----GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG---  181 (410)
T ss_dssp             SSSEEEEEESSS----------CEEEEETTT----CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS---
T ss_pred             CCCEEEEEeCCC----------eEEEEECCC----CcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC---
Confidence            556666654433          345556554    246778999999999999999999999988 99999987642   


Q ss_pred             cceeecceeccceeeeccc-ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEE
Q 015490          147 TEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLV  225 (406)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  225 (406)
                                 .+.+..+. |...|.+++|+|++++|++|+.|++|++||++++.++..+.+|...|.++.|+|++++|+
T Consensus       182 -----------~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~  250 (410)
T 1vyh_C          182 -----------FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIA  250 (410)
T ss_dssp             -----------SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             -----------CceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEE
Confidence                       22333343 447899999999999999999999999999999999999999988999999999999999


Q ss_pred             EEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCce--------------EEEEEEEcCCCcEEEEEeCCCce
Q 015490          226 SLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDY--------------VLYIAAITDRGASIVTWNTTTWK  291 (406)
Q Consensus       226 s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~l~~~~~~~~~~~i~~~d~~~~~  291 (406)
                      +++.|+.|++||+++++....+..+ ...+.+++|+|++....              .-.++++++.|+.|++||+++++
T Consensus       251 s~s~D~~v~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~  329 (410)
T 1vyh_C          251 SCSNDQTVRVWVVATKECKAELREH-RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM  329 (410)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred             EEcCCCeEEEEECCCCceeeEecCC-CceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence            9999999999999999888887654 55789999999742100              00145677889999999999999


Q ss_pred             EEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEE
Q 015490          292 RIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTV  371 (406)
Q Consensus       292 ~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~  371 (406)
                      ++..+.+|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+. +|...|++++|+|++.+|++|+.|++|++|+
T Consensus       330 ~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~  408 (410)
T 1vyh_C          330 CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN-AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  408 (410)
T ss_dssp             EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE-CCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc-CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence            999999999999999999999999999999999999999999888886 8999999999999999999999999999998


Q ss_pred             ec
Q 015490          372 IE  373 (406)
Q Consensus       372 ~~  373 (406)
                      ++
T Consensus       409 ~r  410 (410)
T 1vyh_C          409 CR  410 (410)
T ss_dssp             --
T ss_pred             CC
Confidence            64

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=6.7e-42  Score=306.71  Aligned_cols=272  Identities=15%  Similarity=0.148  Sum_probs=231.8

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVEN  146 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~  146 (406)
                      +...++.++..+        .+.++.++...    ......+.+|...|.+++|+|++..+++++ |+.+++|++.  ++
T Consensus        47 ~~~~l~tgs~D~--------~v~vW~~~~~~----~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~--~~  112 (321)
T 3ow8_A           47 NSETVVTGSLDD--------LVKVWKWRDER----LDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE--NG  112 (321)
T ss_dssp             --CEEEEEETTS--------CEEEEEEETTE----EEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT--TT
T ss_pred             CCCEEEEEcCCC--------CEEEEECCCCC----eeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC--CC
Confidence            345666554332        45666655432    134557899999999999999999999988 8888887654  23


Q ss_pred             cceeecceeccceeeeccc-ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEE
Q 015490          147 TEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLV  225 (406)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  225 (406)
                      +..            ..+. +...+.+++|+|++++|++|+.||.|++|++++++....+..+...|.+++|+|++++|+
T Consensus       113 ~~~------------~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la  180 (321)
T 3ow8_A          113 KQI------------KSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLA  180 (321)
T ss_dssp             EEE------------EEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEE
T ss_pred             CEE------------EEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEE
Confidence            222            2222 346788999999999999999999999999999998888888888999999999999999


Q ss_pred             EEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEE
Q 015490          226 SLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSS  305 (406)
Q Consensus       226 s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~  305 (406)
                      +++.|+.|++||+++++.+..+..+ ...+.+++|+|+++      .+++++.|+.|++||+++++....+..|...|.+
T Consensus       181 sg~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~spd~~------~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~  253 (321)
T 3ow8_A          181 SGAIDGIINIFDIATGKLLHTLEGH-AMPIRSLTFSPDSQ------LLVTASDDGYIKIYDVQHANLAGTLSGHASWVLN  253 (321)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCC-SSCCCEEEECTTSC------EEEEECTTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred             EEcCCCeEEEEECCCCcEEEEEccc-CCceeEEEEcCCCC------EEEEEcCCCeEEEEECCCcceeEEEcCCCCceEE
Confidence            9999999999999999998888754 45688999999998      4677789999999999999999999999999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490          306 FNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       306 ~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~  373 (406)
                      ++|+|++++|++++.|++|++||+.+++.+..+. +|...|.+++|+|++++|++++.|++|++||+.
T Consensus       254 ~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          254 VAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF-DHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEc-CCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            9999999999999999999999999999999986 899999999999999999999999999999963

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.7e-42  Score=315.22  Aligned_cols=290  Identities=15%  Similarity=0.171  Sum_probs=229.3

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEeccccc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENT  147 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~  147 (406)
                      ++++++.++... .+  +.+ ..+..|+...............+|...|.+++|+|++.+++++.++.++||++......
T Consensus        53 DG~~las~s~d~-~~--~wd-~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~  128 (357)
T 4g56_B           53 DGALLLAASSLS-SR--TWG-GSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESL  128 (357)
T ss_dssp             SSCEEEEEECSS-SS--SCC-EEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------
T ss_pred             CCCEEEEEcCCC-Cc--ccc-CeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeecccccee
Confidence            677777654322 11  111 24566666554444455666778999999999999998776666999999876543211


Q ss_pred             ceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCC-EEEE
Q 015490          148 EIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGK-FLVS  226 (406)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s  226 (406)
                      ...         ......|...|.+++|+|++++|++|+.|+.|++||+++++.+..+..|...|++++|++++. ++++
T Consensus       129 ~~~---------~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s  199 (357)
T 4g56_B          129 LVN---------KFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLS  199 (357)
T ss_dssp             CCC---------CEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEE
T ss_pred             EEE---------eeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeee
Confidence            111         111234568899999999999999999999999999999999999988999999999999875 7899


Q ss_pred             EeCCCCEEEEEcCCCeeeeeccc-CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEE
Q 015490          227 LGNRGPGRVWDLASSAVATPLAK-ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSS  305 (406)
Q Consensus       227 ~s~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~  305 (406)
                      ++.|+.|++||+++++....+.. .+...+.+++|+|++..     ++++++.|+.|++||+++++.+..+..|...|.+
T Consensus       200 ~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~-----~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~  274 (357)
T 4g56_B          200 CGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDD-----TFACGDETGNVSLVNIKNPDSAQTSAVHSQNITG  274 (357)
T ss_dssp             EETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTT-----EEEEEESSSCEEEEESSCGGGCEEECCCSSCEEE
T ss_pred             eccCCceEEEECCCCceeeeeeeccccccccchhhhhcccc-----eEEEeecccceeEEECCCCcEeEEEeccceeEEE
Confidence            99999999999999887766543 34556889999999876     5667788999999999999999999999999999


Q ss_pred             EEEcCCC-CEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcC-CCCeEEEEECCCcEEEEEecCCcC
Q 015490          306 FNVSADG-KLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSY-DSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       306 ~~~sp~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      ++|+|++ ++|++|+.|++|+|||+++++.+..+  +|.+.|++++|+| ++++|+|++.||+|++|++.+..+
T Consensus       275 l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~--~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~  346 (357)
T 4g56_B          275 LAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL--SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR  346 (357)
T ss_dssp             EEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC--CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred             EEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC--CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence            9999987 68999999999999999999887765  6999999999998 799999999999999999976544

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.1e-41  Score=307.70  Aligned_cols=256  Identities=17%  Similarity=0.175  Sum_probs=210.3

Q ss_pred             ceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEE
Q 015490          105 PVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFA  183 (406)
Q Consensus       105 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  183 (406)
                      .......|...|.+++|+|++. +++++ |+.++||+++....  ....       ......|.+.|++++|+|+|++|+
T Consensus        74 ~~~~~~~~~~~v~~~~~s~d~~-l~~~s~dg~v~lWd~~~~~~--~~~~-------~~~~~~H~~~V~~v~~spdg~~l~  143 (344)
T 4gqb_B           74 FCSAGVQTEAGVADLTWVGERG-ILVASDSGAVELWELDENET--LIVS-------KFCKYEHDDIVSTVSVLSSGTQAV  143 (344)
T ss_dssp             GCSEEEEESSCEEEEEEETTTE-EEEEETTSEEEEEEECTTSS--CEEE-------EEEEECCSSCEEEEEECTTSSEEE
T ss_pred             eeeeeeccCCCEEEEEEeCCCe-EEEEECCCEEEEEeccCCCc--eeEe-------eccccCCCCCEEEEEECCCCCEEE
Confidence            3344556788899999999965 55555 89999988764321  1111       011123568899999999999999


Q ss_pred             EeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCC-EEEEEeCCCCEEEEEcCCCeeeeeccc-CCcceEEEEEEE
Q 015490          184 AGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGK-FLVSLGNRGPGRVWDLASSAVATPLAK-ENDELFASCRFS  261 (406)
Q Consensus       184 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~  261 (406)
                      +|+.|++|++||+++++.+..+.+|...|++++|++++. +|++++.|++|++||+++++....+.. .+...+.+++|+
T Consensus       144 sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  223 (344)
T 4gqb_B          144 SGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWH  223 (344)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEEC
T ss_pred             EEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeec
Confidence            999999999999999999999999999999999999885 789999999999999999998887754 334468899999


Q ss_pred             cCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCceEEEEeec
Q 015490          262 PLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADG-KLLAVGTASGDISIIDSSSLQVRTAVKK  340 (406)
Q Consensus       262 ~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~  340 (406)
                      |++..     ++++++.|+.|++||+++++++..+..|...|.+++|+|++ ++|++|+.|++|+|||+.+++... + .
T Consensus       224 p~~~~-----~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~-~  296 (344)
T 4gqb_B          224 PQQSE-----VFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-S-Q  296 (344)
T ss_dssp             SSCTT-----EEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-E-C
T ss_pred             CCCCc-----ceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-E-c
Confidence            98876     56777889999999999999999999999999999999998 589999999999999999887664 4 3


Q ss_pred             ccccceEEEEEcCCCCe-EEEEECCCcEEEEEecCCcC
Q 015490          341 AHLGIVTALAFSYDSRA-LVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       341 ~~~~~v~~~~~sp~~~~-l~s~s~dg~i~iw~~~~~~~  377 (406)
                      +|.+.|++++|+|+++. |++++.|++|++|++.+...
T Consensus       297 ~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          297 AHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred             CCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence            89999999999999864 67899999999999987543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=6.7e-42  Score=304.54  Aligned_cols=257  Identities=14%  Similarity=0.198  Sum_probs=220.9

Q ss_pred             cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCCE
Q 015490          104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTI  181 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~  181 (406)
                      +...++.+|.+.|.+++|+|++++|++++ |+.+++|++..  +.            .+..+. +...|.+++|+|++++
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~--~~------------~~~~~~~~~~~v~~~~~~~~~~~   69 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYET--QV------------EVRSIQVTETPVRAGKFIARKNW   69 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT--TE------------EEEEEECCSSCEEEEEEEGGGTE
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC--Cc------------eeEEeeccCCcEEEEEEeCCCCE
Confidence            46678999999999999999999999998 88888876542  22            223333 4478999999999999


Q ss_pred             EEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeee-eecccCCcceEEEEEE
Q 015490          182 FAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVA-TPLAKENDELFASCRF  260 (406)
Q Consensus       182 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~  260 (406)
                      |++|+.|++|++||+.+++.+..+..|...|.+++|+|++++|++++.|++|++||++++... ..+. .+...+.+++|
T Consensus        70 l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~-~h~~~v~~v~~  148 (304)
T 2ynn_A           70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE-GHEHFVMCVAF  148 (304)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC-CCCSCEEEEEE
T ss_pred             EEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc-ccCCcEEEEEE
Confidence            999999999999999999999999999999999999999999999999999999999887544 4444 45667999999


Q ss_pred             EcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEee-ecCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCceEEEE
Q 015490          261 SPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQ-VVREPVSSFNVSA--DGKLLAVGTASGDISIIDSSSLQVRTA  337 (406)
Q Consensus       261 ~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~i~~~~~sp--~~~~l~~~~~dg~i~i~d~~~~~~~~~  337 (406)
                      +|.+..     .+++++.|+.|++||+++......+. .+...+..++|+|  ++++|++|+.|+.|++||+++++.+..
T Consensus       149 ~p~~~~-----~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~  223 (304)
T 2ynn_A          149 NPKDPS-----TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT  223 (304)
T ss_dssp             CTTCTT-----EEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             CCCCCC-----EEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcccee
Confidence            996544     56778899999999998877655554 4457889999987  778999999999999999999999999


Q ss_pred             eecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490          338 VKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       338 ~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~  381 (406)
                      +. +|...|.+++|+|++++|++|+.||+|++||+++++.+..+
T Consensus       224 ~~-~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~  266 (304)
T 2ynn_A          224 LE-GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL  266 (304)
T ss_dssp             EE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             eC-CCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeec
Confidence            86 89999999999999999999999999999999988765443

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.9e-40  Score=299.96  Aligned_cols=271  Identities=18%  Similarity=0.236  Sum_probs=228.8

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVEN  146 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~  146 (406)
                      ++++++.++..|          .+..|+...    ...+..+..|...|.+++|+|+++++++++ ++.+++|++.....
T Consensus        66 d~~~l~s~s~Dg----------~v~iWd~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~  131 (340)
T 1got_B           66 DSRLLLSASQDG----------KLIIWDSYT----TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG  131 (340)
T ss_dssp             TSSEEEEEETTT----------EEEEEETTT----CCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSB
T ss_pred             CCCEEEEEeCCC----------cEEEEECCC----CCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCC
Confidence            666777664433          466666554    346778899999999999999999999988 88888887654321


Q ss_pred             cceeecceeccceeeecc-cccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEE
Q 015490          147 TEIRRLGVKISEKVLSQL-ENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLV  225 (406)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  225 (406)
                      .          ......+ .|.+.|.++.|++++. +++++.|++|++||+++++....+.+|...|.+++|+|++++|+
T Consensus       132 ~----------~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  200 (340)
T 1got_B          132 N----------VRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV  200 (340)
T ss_dssp             S----------CEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             c----------ceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEE
Confidence            1          1122223 3457899999998875 88999999999999999999988988989999999999999999


Q ss_pred             EEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC--CCe
Q 015490          226 SLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR--EPV  303 (406)
Q Consensus       226 s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~i  303 (406)
                      +++.|+.|++||+++++....+..+ ...+.+++|+|+++      .+++++.|+.|++||+++++.+..+..+.  ..|
T Consensus       201 sg~~d~~v~~wd~~~~~~~~~~~~h-~~~v~~v~~~p~~~------~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v  273 (340)
T 1got_B          201 SGACDASAKLWDVREGMCRQTFTGH-ESDINAICFFPNGN------AFATGSDDATCRLFDLRADQELMTYSHDNIICGI  273 (340)
T ss_dssp             EEETTSCEEEEETTTCSEEEEECCC-SSCEEEEEECTTSS------EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred             EEeCCCcEEEEECCCCeeEEEEcCC-cCCEEEEEEcCCCC------EEEEEcCCCcEEEEECCCCcEEEEEccCCcccce
Confidence            9999999999999999988888754 45689999999998      35677889999999999988877765332  479


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEE
Q 015490          304 SSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTV  371 (406)
Q Consensus       304 ~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~  371 (406)
                      .+++|+|+|++|++|+.|+.|++||+.+++....+. +|...|.+++|+|+|++|++|+.|++|++||
T Consensus       274 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          274 TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA-GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEee-cCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            999999999999999999999999999999988886 8999999999999999999999999999996

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.1e-40  Score=309.20  Aligned_cols=255  Identities=16%  Similarity=0.265  Sum_probs=228.2

Q ss_pred             ceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCCEE
Q 015490          105 PVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIF  182 (406)
Q Consensus       105 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l  182 (406)
                      ....+.+|.+.|++++|+|++.++++++ |+.++||++..  +            +....+. |...|.+++|+|++++|
T Consensus       100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~--~------------~~~~~l~~h~~~V~~v~~~~~~~~l  165 (410)
T 1vyh_C          100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET--G------------DFERTLKGHTDSVQDISFDHSGKLL  165 (410)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTT--C------------CCCEEECCCSSCEEEEEECTTSSEE
T ss_pred             ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--C------------cEEEEEeccCCcEEEEEEcCCCCEE
Confidence            3567899999999999999999999998 89999987653  2            2223333 44789999999999999


Q ss_pred             EEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEc
Q 015490          183 AAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSP  262 (406)
Q Consensus       183 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  262 (406)
                      ++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||++++.++..+..+ ...+.++.|+|
T Consensus       166 ~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h-~~~v~~~~~~~  244 (410)
T 1vyh_C          166 ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH-REWVRMVRPNQ  244 (410)
T ss_dssp             EEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEECT
T ss_pred             EEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCC-CccEEEEEECC
Confidence            99999999999999999999999899899999999999999999999999999999999998888754 45688999999


Q ss_pred             CCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCC--------------------CCEEEEEeCCC
Q 015490          263 LNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSAD--------------------GKLLAVGTASG  322 (406)
Q Consensus       263 ~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~--------------------~~~l~~~~~dg  322 (406)
                      ++.      ++++++.|+.|++||+++++....+..|...|.+++|+|+                    +.+|++|+.|+
T Consensus       245 ~g~------~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~  318 (410)
T 1vyh_C          245 DGT------LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK  318 (410)
T ss_dssp             TSS------EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS
T ss_pred             CCC------EEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCC
Confidence            998      4567788999999999999999999999999999999996                    67999999999


Q ss_pred             cEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490          323 DISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       323 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~  381 (406)
                      .|++||+++++.+..+. +|...|.+++|+|+|++|++|+.|++|++||+.+++.+..+
T Consensus       319 ~i~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~  376 (410)
T 1vyh_C          319 TIKMWDVSTGMCLMTLV-GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL  376 (410)
T ss_dssp             EEEEEETTTTEEEEEEE-CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE
T ss_pred             eEEEEECCCCceEEEEE-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE
Confidence            99999999999999886 89999999999999999999999999999999988765443

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.2e-39  Score=290.07  Aligned_cols=274  Identities=15%  Similarity=0.184  Sum_probs=225.0

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVEN  146 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~  146 (406)
                      ++++++.++..|          .+..|+...    ...+..+..|...|.+++|+|++++|++++ |+.+++|++.  ++
T Consensus        24 ~~~~l~s~~~dg----------~v~lWd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~--~~   87 (304)
T 2ynn_A           24 TEPWVLTTLYSG----------RVELWNYET----QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN--TG   87 (304)
T ss_dssp             SSSEEEEEETTS----------EEEEEETTT----TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT--TC
T ss_pred             CCCEEEEEcCCC----------cEEEEECCC----CceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECC--CC
Confidence            667777665433          455666654    346788999999999999999999999998 8888887654  22


Q ss_pred             cceeecceeccceeeeccc-ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-eEeeeeccCCceeEEEEcc-CCCE
Q 015490          147 TEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLE-IILNESEAHASVKDLSFSP-DGKF  223 (406)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~i~~~~~s~-~~~~  223 (406)
                      +            .+..+. |...|.+++|+|++++|++|+.|++|++||++++. ....+.+|...|.+++|+| ++..
T Consensus        88 ~------------~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~  155 (304)
T 2ynn_A           88 E------------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST  155 (304)
T ss_dssp             C------------EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTE
T ss_pred             c------------EEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCE
Confidence            2            223333 45889999999999999999999999999998774 4455677788999999999 6789


Q ss_pred             EEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCe
Q 015490          224 LVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPV  303 (406)
Q Consensus       224 l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i  303 (406)
                      |++++.|++|++||++++.....+..++...+..+.|+|....    -.+++++.|+.|++||+++++++..+.+|...|
T Consensus       156 l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v  231 (304)
T 2ynn_A          156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK----PYMITASDDLTIKIWDYQTKSCVATLEGHMSNV  231 (304)
T ss_dssp             EEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTC----CEEEEEETTSEEEEEETTTTEEEEEEECCSSCE
T ss_pred             EEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCC----CEEEEEcCCCeEEEEeCCCCccceeeCCCCCCE
Confidence            9999999999999999887777666666667888999874332    145677889999999999999999999999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCC--eEEEEECCCcEEEEEecCC
Q 015490          304 SSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSR--ALVSASMDSSVRVTVIEDK  375 (406)
Q Consensus       304 ~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~s~s~dg~i~iw~~~~~  375 (406)
                      .+++|+|++++|++|+.||+|++||+.+++....+. .|...+.+++|+|++.  ++++|+.| .+.+|++.+.
T Consensus       232 ~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~~~  303 (304)
T 2ynn_A          232 SFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN-VGLERSWCIATHPTGRKNYIASGFDN-GFTVLSLGND  303 (304)
T ss_dssp             EEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC-CSSSSEEEEEECTTCGGGCEEEEETT-EEEEEECC--
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCCceeeecc-CCCccEEEEEECCCCCceEEEEecCC-ceEEEEeccC
Confidence            999999999999999999999999999999999986 7889999999999875  47776655 5788888653

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.8e-40  Score=297.38  Aligned_cols=256  Identities=19%  Similarity=0.257  Sum_probs=223.6

Q ss_pred             ceeEEecCCCCceEEEEccC----CCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCC
Q 015490          105 PVAELRTDSDLPYRMAIHPH----GDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSE  178 (406)
Q Consensus       105 ~~~~~~~h~~~v~~~~~sp~----~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~  178 (406)
                      ....+.+|.+.|.+++|+|+    +.+|++|+ |+.++||+++....            .....+. |...|.+++|+++
T Consensus        24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~------------~~~~~l~gh~~~v~~~~~~~~   91 (321)
T 3ow8_A           24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL------------DLQWSLEGHQLGVVSVDISHT   91 (321)
T ss_dssp             EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE------------EEEEEECCCSSCEEEEEECSS
T ss_pred             eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe------------eeeeeeccCCCCEEEEEECCC
Confidence            34556789999999999985    56888888 99999999875321            1122233 4478999999999


Q ss_pred             CCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEE
Q 015490          179 GTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASC  258 (406)
Q Consensus       179 g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  258 (406)
                      +.++++++.|++|++||+.+++.+..+..+...+.+++|+|++++|++++.|+.+++||+++++....+..+ ...+.++
T Consensus        92 ~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~-~~~v~~~  170 (321)
T 3ow8_A           92 LPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTR-GKFILSI  170 (321)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECS-SSCEEEE
T ss_pred             CCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCC-CceEEEE
Confidence            999999999999999999999999888888889999999999999999999999999999999888777654 4568899


Q ss_pred             EEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEe
Q 015490          259 RFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAV  338 (406)
Q Consensus       259 ~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~  338 (406)
                      +|+|+++.      +++++.|+.|++||+++++.+..+..|...|.+++|+|++++|++|+.|+.|++||+++++....+
T Consensus       171 ~~spdg~~------lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~  244 (321)
T 3ow8_A          171 AYSPDGKY------LASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL  244 (321)
T ss_dssp             EECTTSSE------EEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred             EECCCCCE------EEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEE
Confidence            99999983      566788999999999999999999999999999999999999999999999999999999988888


Q ss_pred             ecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCC
Q 015490          339 KKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGG  380 (406)
Q Consensus       339 ~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~  380 (406)
                      . +|...|.+++|+|++++|++++.|++|++||+++++.+..
T Consensus       245 ~-~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~  285 (321)
T 3ow8_A          245 S-GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHT  285 (321)
T ss_dssp             C-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             c-CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEE
Confidence            5 8999999999999999999999999999999998876543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.2e-39  Score=293.38  Aligned_cols=275  Identities=20%  Similarity=0.221  Sum_probs=228.9

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVEN  146 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~  146 (406)
                      +++.++.++..|          .+..|+...    ......+..|...|.+++|+|++..+++++ |+.+++|.+.....
T Consensus        75 d~~~l~s~s~Dg----------~v~vWd~~~----~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~  140 (354)
T 2pbi_B           75 DKRRIVSSSQDG----------KVIVWDSFT----TNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKN  140 (354)
T ss_dssp             TSSEEEEEETTS----------EEEEEETTT----CCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTT
T ss_pred             CCCEEEEEeCCC----------eEEEEECCC----CCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccc
Confidence            566666654433          456666544    245677888999999999999999999998 88889988764322


Q ss_pred             cceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEcc--CCCEE
Q 015490          147 TEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSP--DGKFL  224 (406)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l  224 (406)
                      ....       ........|...|.+++|+|++..|++++.|++|++||+++++.+..+.+|...|.+++|+|  ++++|
T Consensus       141 ~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l  213 (354)
T 2pbi_B          141 ENMA-------AKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF  213 (354)
T ss_dssp             CCSG-------GGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEE
T ss_pred             cccc-------ccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEE
Confidence            1110       00111123558899999999999999999999999999999999999999988999999987  57899


Q ss_pred             EEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC--CC
Q 015490          225 VSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR--EP  302 (406)
Q Consensus       225 ~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~  302 (406)
                      ++++.|+.|++||+++++++..+..+ ...+.+++|+|++.      .+++++.|+.|++||+++.+.+..+..+.  ..
T Consensus       214 ~sgs~Dg~v~~wd~~~~~~~~~~~~h-~~~v~~v~~~p~~~------~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~  286 (354)
T 2pbi_B          214 VSGGCDKKAMVWDMRSGQCVQAFETH-ESDVNSVRYYPSGD------AFASGSDDATCRLYDLRADREVAIYSKESIIFG  286 (354)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSS------EEEEEETTSCEEEEETTTTEEEEEECCTTCCSC
T ss_pred             EEEeCCCeEEEEECCCCcEEEEecCC-CCCeEEEEEeCCCC------EEEEEeCCCeEEEEECCCCcEEEEEcCCCcccc
Confidence            99999999999999999988888754 45689999999987      35677889999999999988777665442  46


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEE
Q 015490          303 VSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTV  371 (406)
Q Consensus       303 i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~  371 (406)
                      +.+++|+|++++|++|+.|+.|++||+.+++.+..+. +|...|.+++|+|+|++|++|+.|++|++|+
T Consensus       287 ~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~-~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          287 ASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF-GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC-CCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             eeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEE-CCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            8999999999999999999999999999999888885 8999999999999999999999999999995

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.4e-39  Score=291.53  Aligned_cols=285  Identities=14%  Similarity=0.163  Sum_probs=215.0

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVEN  146 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~  146 (406)
                      ++++++.++..+        .+.++.....  .+. .......+|...|.+++|+|++++|++++ |+.++||+.+....
T Consensus        27 ~g~~las~~~D~--------~i~iw~~~~~--~~~-~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~   95 (345)
T 3fm0_A           27 AGTLLASCGGDR--------RIRIWGTEGD--SWI-CKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDF   95 (345)
T ss_dssp             TSSCEEEEETTS--------CEEEEEEETT--EEE-EEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-E
T ss_pred             CCCEEEEEcCCC--------eEEEEEcCCC--cce-eeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCe
Confidence            566666664433        3455544432  110 01122368999999999999999999998 99999998764321


Q ss_pred             cceeecceeccceeeeccc-ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc---eEeeeeccCCceeEEEEccCCC
Q 015490          147 TEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLE---IILNESEAHASVKDLSFSPDGK  222 (406)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~i~~~~~s~~~~  222 (406)
                                  ..+..+. |...|.+++|+|++++|++|+.|++|++||++++.   .+..+..|...|.+++|+|+++
T Consensus        96 ------------~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  163 (345)
T 3fm0_A           96 ------------ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE  163 (345)
T ss_dssp             ------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred             ------------EEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence                        2233333 45789999999999999999999999999997764   3455667778999999999999


Q ss_pred             EEEEEeCCCCEEEEEcCCCee--eeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC-----------
Q 015490          223 FLVSLGNRGPGRVWDLASSAV--ATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT-----------  289 (406)
Q Consensus       223 ~l~s~s~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~-----------  289 (406)
                      +|++++.|+.|++||.++++.  ...+.. +...+.+++|+|+++      .+++++.|+.|++||...           
T Consensus       164 ~l~s~s~d~~i~~w~~~~~~~~~~~~~~~-h~~~v~~l~~sp~g~------~l~s~s~D~~v~iW~~~~~~~~~~~~~~~  236 (345)
T 3fm0_A          164 LLASASYDDTVKLYREEEDDWVCCATLEG-HESTVWSLAFDPSGQ------RLASCSDDRTVRIWRQYLPGNEQGVACSG  236 (345)
T ss_dssp             CEEEEETTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECTTSS------EEEEEETTSCEEEEEEECTTCTTCCCCC-
T ss_pred             EEEEEeCCCcEEEEEecCCCEEEEEEecC-CCCceEEEEECCCCC------EEEEEeCCCeEEEeccccCCCCccceeec
Confidence            999999999999999988753  345554 456799999999998      356778899999999632           


Q ss_pred             ----ceEEEEeee-cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCce--------EEEEeecccccceEEEEEcCCC-
Q 015490          290 ----WKRIRTKQV-VREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQ--------VRTAVKKAHLGIVTALAFSYDS-  355 (406)
Q Consensus       290 ----~~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~~v~~~~~sp~~-  355 (406)
                          .+++..+.. |...|.+++|+|++..|++++.|+.|++|+.....        .......+|...|++++|+|++ 
T Consensus       237 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~  316 (345)
T 3fm0_A          237 SDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEP  316 (345)
T ss_dssp             --CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSST
T ss_pred             cCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCc
Confidence                233444444 67889999999999999999999999999986542        1222224799999999999997 


Q ss_pred             CeEEEEECCCcEEEEEecCCcCCCCch
Q 015490          356 RALVSASMDSSVRVTVIEDKKKSGGLN  382 (406)
Q Consensus       356 ~~l~s~s~dg~i~iw~~~~~~~~~~~~  382 (406)
                      .+|++|+.||+|++|++.++++....+
T Consensus       317 ~~laS~s~Dg~v~~W~~~~~~~~~~~~  343 (345)
T 3fm0_A          317 GLLASCSDDGEVAFWKYQRPEGLHHHH  343 (345)
T ss_dssp             TEEEEEETTSCEEEEEECC--------
T ss_pred             eEEEEcCCCCcEEEEEecCCCCccccc
Confidence            589999999999999999988765543

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=6.7e-39  Score=287.13  Aligned_cols=261  Identities=14%  Similarity=0.169  Sum_probs=211.7

Q ss_pred             cceeEEecCCCCceEEEEccCC-CeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCC
Q 015490          104 QPVAELRTDSDLPYRMAIHPHG-DGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGT  180 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~~-~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~  180 (406)
                      ....++.+|.+.|.+++|+|++ .+|++++ |+.+++|++......         ....+..+. |...|.+++|+|+++
T Consensus         8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~---------~~~~~~~~~~h~~~v~~~~~s~dg~   78 (319)
T 3frx_A            8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK---------FGVPVRSFKGHSHIVQDCTLTADGA   78 (319)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE---------EEEEEEEEECCSSCEEEEEECTTSS
T ss_pred             EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc---------ccccceEEeCCcccEEEEEECCCCC
Confidence            3556789999999999999976 6788887 899999887643211         112233444 447899999999999


Q ss_pred             EEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEE
Q 015490          181 IFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRF  260 (406)
Q Consensus       181 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  260 (406)
                      +|++|+.|++|++||+.+++....+.+|...|.+++|+|++++|++++.|++|++||++. +....+..+ ...+.++.|
T Consensus        79 ~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h-~~~v~~~~~  156 (319)
T 3frx_A           79 YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGH-NDWVSQVRV  156 (319)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECCC-SSCEEEEEE
T ss_pred             EEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEecc-CCcEEEEEE
Confidence            999999999999999999999999999999999999999999999999999999999964 555555544 556889999


Q ss_pred             EcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEee-
Q 015490          261 SPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVK-  339 (406)
Q Consensus       261 ~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-  339 (406)
                      +|......--..+++++.|+.|++||+++.+....+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+. 
T Consensus       157 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~  236 (319)
T 3frx_A          157 VPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA  236 (319)
T ss_dssp             CCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred             ccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC
Confidence            9864310000145667889999999999999999999999999999999999999999999999999998877655442 


Q ss_pred             ----------------------------------------------cccccceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490          340 ----------------------------------------------KAHLGIVTALAFSYDSRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       340 ----------------------------------------------~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~  373 (406)
                                                                    ..|...+.+++|+|||++|++|+.||.|++||+.
T Consensus       237 ~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~  316 (319)
T 3frx_A          237 QDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM  316 (319)
T ss_dssp             CSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             CCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence                                                          0123456788888899899999999999999887


Q ss_pred             CC
Q 015490          374 DK  375 (406)
Q Consensus       374 ~~  375 (406)
                      ++
T Consensus       317 t~  318 (319)
T 3frx_A          317 TA  318 (319)
T ss_dssp             EC
T ss_pred             ec
Confidence            64

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.5e-39  Score=298.62  Aligned_cols=282  Identities=19%  Similarity=0.271  Sum_probs=228.2

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVEN  146 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~  146 (406)
                      ++++++.++..+          .+..|+...    .+....+..|...|.+++|+|++++|++++ |+.+++|++.....
T Consensus        77 ~~~~l~s~s~D~----------~v~iWd~~~----~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~  142 (380)
T 3iz6_a           77 EKNWIVSASQDG----------RLIVWNALT----SQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQAD  142 (380)
T ss_dssp             TSSCEEEEETTS----------EEEEEETTT----TEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSS
T ss_pred             CCCEEEEEeCCC----------eEEEEECCC----CccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCcc
Confidence            566666654433          566666654    346788999999999999999999999988 99999998764321


Q ss_pred             cceeecceeccceeeeccc-ccCcEEEEEECCCC-CEEEEeeCCCeEEEEeCCCcceEeee-----eccCCceeEEEEcc
Q 015490          147 TEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEG-TIFAAGSENGNLRVFKWPSLEIILNE-----SEAHASVKDLSFSP  219 (406)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g-~~l~~~~~dg~i~vwd~~~~~~~~~~-----~~~~~~i~~~~~s~  219 (406)
                      ...       .......+. |.+.+.++.|+|++ ..|++|+.|++|++||+.+++.+..+     .+|...|.+++|++
T Consensus       143 ~~~-------~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  215 (380)
T 3iz6_a          143 RDG-------NMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS  215 (380)
T ss_dssp             CCC-------SSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred             ccC-------CccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence            100       111122233 44778999999974 67999999999999999999887665     45667899999987


Q ss_pred             -CCCEEEEEeCCCCEEEEEcCC-CeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEee
Q 015490          220 -DGKFLVSLGNRGPGRVWDLAS-SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQ  297 (406)
Q Consensus       220 -~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~  297 (406)
                       ++++|++++.|++|++||++. ++....+.. +...+.+++|+|++.      .+++++.|+.|++||+++++.+..+.
T Consensus       216 ~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~-h~~~v~~v~~~p~~~------~l~s~s~D~~i~lwd~~~~~~~~~~~  288 (380)
T 3iz6_a          216 LNANMFISGSCDTTVRLWDLRITSRAVRTYHG-HEGDINSVKFFPDGQ------RFGTGSDDGTCRLFDMRTGHQLQVYN  288 (380)
T ss_dssp             SSCCEEEEEETTSCEEEEETTTTCCCCEEECC-CSSCCCEEEECTTSS------EEEEECSSSCEEEEETTTTEEEEEEC
T ss_pred             CCCCEEEEEECCCeEEEEECCCCCcceEEECC-cCCCeEEEEEecCCC------eEEEEcCCCeEEEEECCCCcEEEEec
Confidence             889999999999999999984 455566654 455688999999998      36778899999999999999888776


Q ss_pred             ecC-------CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEee---cccccceEEEEEcCCCCeEEEEECCCcE
Q 015490          298 VVR-------EPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVK---KAHLGIVTALAFSYDSRALVSASMDSSV  367 (406)
Q Consensus       298 ~~~-------~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~sp~~~~l~s~s~dg~i  367 (406)
                      .+.       ..+.+++|+|+|++|++|+.||.|++||+.+++....+.   .+|.+.|.+++|+|+|++|++|+.|++|
T Consensus       289 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i  368 (380)
T 3iz6_a          289 REPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNL  368 (380)
T ss_dssp             CCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCE
T ss_pred             ccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCE
Confidence            543       248899999999999999999999999999888777662   3799999999999999999999999999


Q ss_pred             EEEEecCCcC
Q 015490          368 RVTVIEDKKK  377 (406)
Q Consensus       368 ~iw~~~~~~~  377 (406)
                      ++|++...++
T Consensus       369 ~iW~~~~~~~  378 (380)
T 3iz6_a          369 KIWAFSGHRK  378 (380)
T ss_dssp             EEEECCSSSS
T ss_pred             EEEecCCCcc
Confidence            9999988765

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.3e-39  Score=294.24  Aligned_cols=257  Identities=18%  Similarity=0.145  Sum_probs=207.0

Q ss_pred             cCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCe
Q 015490          111 TDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGN  190 (406)
Q Consensus       111 ~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  190 (406)
                      .|...|.+++|+|||++|+++++.++++|+..........  .............+...|.+++|+|++ .|++|+.||+
T Consensus        28 ~~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~  104 (344)
T 4gqb_B           28 CMERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPC--AAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA  104 (344)
T ss_dssp             SCCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGG--GTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred             cccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeecccc--ccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence            4677899999999999999888888888753221100000  000011222334456789999999985 6789999999


Q ss_pred             EEEEeCCCcceEee----eeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCC
Q 015490          191 LRVFKWPSLEIILN----ESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNE  266 (406)
Q Consensus       191 i~vwd~~~~~~~~~----~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (406)
                      |+|||+++++....    ..+|...|++++|+|++++|++++.|++|++||+++++.+..+..| ...|.+++|++++..
T Consensus       105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h-~~~V~~~~~~~~~~~  183 (344)
T 4gqb_B          105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAH-AAQVTCVAASPHKDS  183 (344)
T ss_dssp             EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECSSCTT
T ss_pred             EEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCc-CCceEEEEecCCCCC
Confidence            99999998875433    3467789999999999999999999999999999999999988765 456899999999986


Q ss_pred             ceEEEEEEEcCCCcEEEEEeCCCceEEEEeee--cCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCceEEEEeecccc
Q 015490          267 DYVLYIAAITDRGASIVTWNTTTWKRIRTKQV--VREPVSSFNVSA-DGKLLAVGTASGDISIIDSSSLQVRTAVKKAHL  343 (406)
Q Consensus       267 ~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~i~~~~~sp-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  343 (406)
                           ++++++.|+.|++||+++++....+..  +...+.+++|+| ++++|++|+.||.|++||+++++.+..+. +|.
T Consensus       184 -----~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~-~h~  257 (344)
T 4gqb_B          184 -----VFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSA-VHS  257 (344)
T ss_dssp             -----EEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEE-CCS
T ss_pred             -----ceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEc-CCC
Confidence                 566778899999999999988877643  446789999999 46789999999999999999999999886 899


Q ss_pred             cceEEEEEcCCC-CeEEEEECCCcEEEEEecCCcC
Q 015490          344 GIVTALAFSYDS-RALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       344 ~~v~~~~~sp~~-~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      ..|++++|+|++ ++|++|+.|++|+|||+++++.
T Consensus       258 ~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~  292 (344)
T 4gqb_B          258 QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL  292 (344)
T ss_dssp             SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE
T ss_pred             CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE
Confidence            999999999998 5799999999999999988764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=4.7e-38  Score=280.83  Aligned_cols=271  Identities=14%  Similarity=0.229  Sum_probs=226.4

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVEN  146 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~  146 (406)
                      +++++++++..|          .+..|+...    .+....+.+|...|.+++|+|++++|++++ ++.+++|++..  +
T Consensus        34 ~~~~l~s~~~dg----------~i~iw~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~--~   97 (312)
T 4ery_A           34 NGEWLASSSADK----------LIKIWGAYD----GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS--G   97 (312)
T ss_dssp             TSSEEEEEETTS----------CEEEEETTT----CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--C
T ss_pred             CCCEEEEeeCCC----------eEEEEeCCC----cccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCC--C
Confidence            666777664433          244455543    246678899999999999999999999987 88888876542  2


Q ss_pred             cceeecceeccceeeeccc-ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEE
Q 015490          147 TEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLV  225 (406)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  225 (406)
                      +            .+..+. +...|.+++|+|++++|++|+.|+.|++||+++++....+..|...|.+++|+|++++|+
T Consensus        98 ~------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  165 (312)
T 4ery_A           98 K------------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV  165 (312)
T ss_dssp             C------------EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             c------------EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEE
Confidence            2            222333 457899999999999999999999999999999999888888888999999999999999


Q ss_pred             EEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCe--
Q 015490          226 SLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPV--  303 (406)
Q Consensus       226 s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i--  303 (406)
                      +++.|+.|++||+++++....+...+...+..++|+|+++.      +++++.|+.|++||+++++.+..+..|....  
T Consensus       166 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  239 (312)
T 4ery_A          166 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY------ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC  239 (312)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSE------EEEEETTTEEEEEETTTTEEEEEECSSCCSSSC
T ss_pred             EEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCE------EEEEcCCCeEEEEECCCCcEEEEEEecCCceEE
Confidence            99999999999999998888776666777899999999983      4556789999999999999999888776432  


Q ss_pred             -EEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEE--CCCcEEEEEec
Q 015490          304 -SSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSAS--MDSSVRVTVIE  373 (406)
Q Consensus       304 -~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s--~dg~i~iw~~~  373 (406)
                       ......+++++|++|+.||.|++||+.+++.+..+. +|...|.+++|+|++++|++++  .|++|++|+.+
T Consensus       240 ~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          240 IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-GHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             CCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             EEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhh-ccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence             223334688999999999999999999999998886 8999999999999999999987  69999999964

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.8e-38  Score=287.00  Aligned_cols=254  Identities=13%  Similarity=0.167  Sum_probs=217.6

Q ss_pred             cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCCE
Q 015490          104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTI  181 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~  181 (406)
                      ....++.+|.+.|.+++|+|++++|++++ |+.++||+..  ++...            ..+. +...|.+++|+|++++
T Consensus        46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~--~~~~~------------~~~~~~~~~v~~~~~s~~~~~  111 (340)
T 1got_B           46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSY--TTNKV------------HAIPLRSSWVMTCAYAPSGNY  111 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT--TCCEE------------EEEECSSSCEEEEEECTTSSE
T ss_pred             hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECC--CCCcc------------eEeecCCccEEEEEECCCCCE
Confidence            46678999999999999999999999998 8888887643  22222            2222 4477999999999999


Q ss_pred             EEEeeCCCeEEEEeCCCcc----eEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEE
Q 015490          182 FAAGSENGNLRVFKWPSLE----IILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFAS  257 (406)
Q Consensus       182 l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  257 (406)
                      |++|+.|+.|++|++.+.+    ....+.+|...|.++.|++++. +++++.|++|++||+++++....+..+ ...+.+
T Consensus       112 l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h-~~~v~~  189 (340)
T 1got_B          112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGH-TGDVMS  189 (340)
T ss_dssp             EEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCC-SSCEEE
T ss_pred             EEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCC-CCceEE
Confidence            9999999999999997653    4456677888999999998875 889999999999999999998888765 456889


Q ss_pred             EEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEE
Q 015490          258 CRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTA  337 (406)
Q Consensus       258 ~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~  337 (406)
                      ++|+|+++      ++++++.|+.|++||+++++....+..|...|.+++|+|++++|++|+.||.|++||+++++.+..
T Consensus       190 ~~~~~~~~------~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~  263 (340)
T 1got_B          190 LSLAPDTR------LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT  263 (340)
T ss_dssp             EEECTTSS------EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             EEECCCCC------EEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEE
Confidence            99999987      456778899999999999999999999999999999999999999999999999999999888777


Q ss_pred             eec-ccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCC
Q 015490          338 VKK-AHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSG  379 (406)
Q Consensus       338 ~~~-~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~  379 (406)
                      +.. .+...|.+++|+|+|++|++|+.|+.|++||+.+++.+.
T Consensus       264 ~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~  306 (340)
T 1got_B          264 YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG  306 (340)
T ss_dssp             ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             EccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEee
Confidence            641 233479999999999999999999999999998876543

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=8.1e-38  Score=288.38  Aligned_cols=241  Identities=17%  Similarity=0.225  Sum_probs=204.1

Q ss_pred             CCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCCEEEEeeCCCeE
Q 015490          114 DLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIFAAGSENGNL  191 (406)
Q Consensus       114 ~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~i  191 (406)
                      ..|.+++|+|++++|++++ |+.++||++..              .+....+. |...|.+++|+|++++|++++.|++|
T Consensus       124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~--------------~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v  189 (393)
T 1erj_A          124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIEN--------------RKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTV  189 (393)
T ss_dssp             CBEEEEEECTTSSEEEEEETTSCEEEEETTT--------------TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             eeEEEEEECCCCCEEEEEcCCCeEEEEECCC--------------CcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcE
Confidence            3589999999999999988 88888877542              22233333 45789999999999999999999999


Q ss_pred             EEEeCCCcceEeeeeccCCceeEEEEcc-CCCEEEEEeCCCCEEEEEcCCCeeeeecc------cCCcceEEEEEEEcCC
Q 015490          192 RVFKWPSLEIILNESEAHASVKDLSFSP-DGKFLVSLGNRGPGRVWDLASSAVATPLA------KENDELFASCRFSPLN  264 (406)
Q Consensus       192 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~------~~~~~~~~~~~~~~~~  264 (406)
                      ++||+++++....+. +...+.+++|+| ++++|++++.|+.|++||+++++.+..+.      ..+...+.+++|+|++
T Consensus       190 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g  268 (393)
T 1erj_A          190 RIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG  268 (393)
T ss_dssp             EEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS
T ss_pred             EEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCC
Confidence            999999998776654 556799999999 89999999999999999999988776653      2355679999999999


Q ss_pred             CCceEEEEEEEcCCCcEEEEEeCCCc------------eEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCc
Q 015490          265 NEDYVLYIAAITDRGASIVTWNTTTW------------KRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSL  332 (406)
Q Consensus       265 ~~~~~l~~~~~~~~~~~i~~~d~~~~------------~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~  332 (406)
                      +.      +++++.|+.|++||+++.            .+...+.+|...|.+++|+|++++|++|+.|+.|++||+.++
T Consensus       269 ~~------l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~  342 (393)
T 1erj_A          269 QS------VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG  342 (393)
T ss_dssp             SE------EEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred             CE------EEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence            83      567788999999999753            345667788899999999999999999999999999999999


Q ss_pred             eEEEEeecccccceEEEEEcC------CCCeEEEEECCCcEEEEEecCCc
Q 015490          333 QVRTAVKKAHLGIVTALAFSY------DSRALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       333 ~~~~~~~~~~~~~v~~~~~sp------~~~~l~s~s~dg~i~iw~~~~~~  376 (406)
                      +.+..+. +|...|.+++|++      ++.+|++|+.||+|++|+++..+
T Consensus       343 ~~~~~l~-~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~~  391 (393)
T 1erj_A          343 NPLLMLQ-GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKIA  391 (393)
T ss_dssp             CEEEEEE-CCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC-
T ss_pred             eEEEEEC-CCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccccC
Confidence            9998886 8999999999986      67899999999999999997653

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.2e-38  Score=282.20  Aligned_cols=257  Identities=14%  Similarity=0.176  Sum_probs=195.7

Q ss_pred             eeEE-ec-CCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCCE
Q 015490          106 VAEL-RT-DSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTI  181 (406)
Q Consensus       106 ~~~~-~~-h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~  181 (406)
                      ...+ .+ |.+.|.+++|+|++++|++++ |+.++||+.+.......       .......+. |...|.+++|+|++++
T Consensus        49 ~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~-------~~~~~~~~~~h~~~V~~v~~sp~g~~  121 (330)
T 2hes_X           49 IDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTF-------EMDLLAIIEGHENEVKGVAWSNDGYY  121 (330)
T ss_dssp             EEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------C-------CCEEEEEEC----CEEEEEECTTSCE
T ss_pred             EEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccc-------cceeEEEEcCCCCcEEEEEECCCCCE
Confidence            4445 34 999999999999999999998 99999987653210000       112233343 4478999999999999


Q ss_pred             EEEeeCCCeEEEEeCCCc----ceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCC--eeeeecccCCcceE
Q 015490          182 FAAGSENGNLRVFKWPSL----EIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASS--AVATPLAKENDELF  255 (406)
Q Consensus       182 l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~--~~~~~~~~~~~~~~  255 (406)
                      |++|+.|++|++||++..    +.+..+.+|...|.+++|+|++++|++++.|++|++||..++  +++..+..| ...+
T Consensus       122 las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h-~~~v  200 (330)
T 2hes_X          122 LATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGH-EGTV  200 (330)
T ss_dssp             EEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCC-SSCE
T ss_pred             EEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCC-CCcE
Confidence            999999999999999432    455667778889999999999999999999999999999876  456666654 5578


Q ss_pred             EEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc--------eEEEEeee-cCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 015490          256 ASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW--------KRIRTKQV-VREPVSSFNVSADGKLLAVGTASGDISI  326 (406)
Q Consensus       256 ~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~--------~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~dg~i~i  326 (406)
                      .+++|+|++..    ..+++++.|+.|++||++.+        .....+.. |...|.+++|++++ +|++++.||.|++
T Consensus       201 ~~~~~~~~~~~----~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~i  275 (330)
T 2hes_X          201 WSSDFDKTEGV----FRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAV  275 (330)
T ss_dssp             EEEEECCSSSS----CEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEE
T ss_pred             EEEEecCCCCe----eEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEE
Confidence            89999998432    14567788999999998764        34444444 78899999999765 8899999999999


Q ss_pred             EECCCce--EEEEeeccccc-ceEEEEEcC--CCCeEEEEECCCcEEEEEecCC
Q 015490          327 IDSSSLQ--VRTAVKKAHLG-IVTALAFSY--DSRALVSASMDSSVRVTVIEDK  375 (406)
Q Consensus       327 ~d~~~~~--~~~~~~~~~~~-~v~~~~~sp--~~~~l~s~s~dg~i~iw~~~~~  375 (406)
                      ||..+++  .......+|.. .|.+++|+|  ++++|++|+.||+|++|++++.
T Consensus       276 w~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~~  329 (330)
T 2hes_X          276 YEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEKA  329 (330)
T ss_dssp             EEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC---
T ss_pred             EEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEeccC
Confidence            9998764  33333236876 899999999  7899999999999999998753

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=8.3e-38  Score=304.50  Aligned_cols=275  Identities=17%  Similarity=0.201  Sum_probs=225.6

Q ss_pred             CCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEeccc
Q 015490           67 RRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVE  145 (406)
Q Consensus        67 ~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~  145 (406)
                      |+++.++.+.+         +  .+..|+...    .+....+.+|.+.|++++|+|+|++|++++ |+.++||+.....
T Consensus        28 pdg~~l~~~~~---------~--~v~l~~~~~----~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~   92 (611)
T 1nr0_A           28 PAGDKIQYCNG---------T--SVYTVPVGS----LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT   92 (611)
T ss_dssp             TTSSEEEEEET---------T--EEEEEETTC----SSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT
T ss_pred             CCCCEEEeCCC---------C--EEEEecCCC----cccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCc
Confidence            36777776532         1  345556543    346778999999999999999999999998 8899998764321


Q ss_pred             ccceeecceeccceeeecc-cccCcEEEEEECCCCCEEEEeeCC----CeEEEEeCCCcceEeeeeccCCceeEEEEccC
Q 015490          146 NTEIRRLGVKISEKVLSQL-ENVGQQLALTFDSEGTIFAAGSEN----GNLRVFKWPSLEIILNESEAHASVKDLSFSPD  220 (406)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~  220 (406)
                      ..            ....+ .|.+.|.+++|+|+|++|++++.+    +.|++||  +++....+.+|...|++++|+|+
T Consensus        93 ~~------------~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~  158 (611)
T 1nr0_A           93 HI------------LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPS  158 (611)
T ss_dssp             CC------------EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSS
T ss_pred             ce------------eeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCC
Confidence            11            11122 245789999999999999998765    4777887  45566677888889999999999


Q ss_pred             CC-EEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEee--
Q 015490          221 GK-FLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQ--  297 (406)
Q Consensus       221 ~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~--  297 (406)
                      +. .|++++.|++|++||..+++....+..| ...+.+++|+|+++      .+++++.|+.|++||..+++....+.  
T Consensus       159 ~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H-~~~V~~v~fspdg~------~las~s~D~~i~lwd~~~g~~~~~~~~~  231 (611)
T 1nr0_A          159 RPFRIISGSDDNTVAIFEGPPFKFKSTFGEH-TKFVHSVRYNPDGS------LFASTGGDGTIVLYNGVDGTKTGVFEDD  231 (611)
T ss_dssp             SSCEEEEEETTSCEEEEETTTBEEEEEECCC-SSCEEEEEECTTSS------EEEEEETTSCEEEEETTTCCEEEECBCT
T ss_pred             CCeEEEEEeCCCeEEEEECCCCeEeeeeccc-cCceEEEEECCCCC------EEEEEECCCcEEEEECCCCcEeeeeccc
Confidence            87 6999999999999999998888887754 55799999999998      46677889999999999999888874  


Q ss_pred             -----ecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEee---------------------------------
Q 015490          298 -----VVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVK---------------------------------  339 (406)
Q Consensus       298 -----~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------------------------------  339 (406)
                           .|...|.+++|+|++++|++++.|++|++||+.+++.+..+.                                 
T Consensus       232 ~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~  311 (611)
T 1nr0_A          232 SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP  311 (611)
T ss_dssp             TSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEET
T ss_pred             cccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeC
Confidence                 688999999999999999999999999999999876554321                                 


Q ss_pred             ---------cccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490          340 ---------KAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       340 ---------~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                               .+|...|++++|+|+|++|++++.|++|++||+.+++.
T Consensus       312 ~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~  358 (611)
T 1nr0_A          312 ELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS  358 (611)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred             CCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce
Confidence                     36889999999999999999999999999999988754

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.7e-37  Score=280.22  Aligned_cols=261  Identities=20%  Similarity=0.226  Sum_probs=217.9

Q ss_pred             cceeEEecCCCCceEEEEccC-CCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccc-cCcEEEEEECCCCC
Q 015490          104 QPVAELRTDSDLPYRMAIHPH-GDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLEN-VGQQLALTFDSEGT  180 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~-~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~  180 (406)
                      +...+|+||.+.|++++|+|+ +++|++++ |+.++||++......         .......+.+ ...|.+++|+|+++
T Consensus        29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~---------~~~~~~~l~~h~~~V~~~~~s~dg~   99 (340)
T 4aow_A           29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN---------YGIPQRALRGHSHFVSDVVISSDGQ   99 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC---------SEEEEEEECCCSSCEEEEEECTTSS
T ss_pred             EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc---------cceeeEEEeCCCCCEEEEEECCCCC
Confidence            345679999999999999998 57888887 999999988754321         1122333444 47899999999999


Q ss_pred             EEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEE
Q 015490          181 IFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRF  260 (406)
Q Consensus       181 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  260 (406)
                      +|++++.|+.|++|+............+...+..+.+++++++|++++.|+.+++||+............+...+..++|
T Consensus       100 ~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~  179 (340)
T 4aow_A          100 FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRF  179 (340)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEE
T ss_pred             EEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEE
Confidence            99999999999999999988888877777889999999999999999999999999998776665555556677889999


Q ss_pred             EcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEee-
Q 015490          261 SPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVK-  339 (406)
Q Consensus       261 ~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-  339 (406)
                      ++++..    .++++++.|+.|++||+++++.+..+..|...|.+++|+|++++|++|+.|+.|++||+++.+.+..+. 
T Consensus       180 ~~~~~~----~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~  255 (340)
T 4aow_A          180 SPNSSN----PIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG  255 (340)
T ss_dssp             CSCSSS----CEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred             ccCCCC----cEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC
Confidence            988765    245566789999999999999999999999999999999999999999999999999998766544332 


Q ss_pred             -----------------------------------------------cccccceEEEEEcCCCCeEEEEECCCcEEEEEe
Q 015490          340 -----------------------------------------------KAHLGIVTALAFSYDSRALVSASMDSSVRVTVI  372 (406)
Q Consensus       340 -----------------------------------------------~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~  372 (406)
                                                                     .+|...|++++|+|+|++|++|+.||.|+|||+
T Consensus       256 ~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~  335 (340)
T 4aow_A          256 GDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV  335 (340)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             CceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence                                                           246677999999999999999999999999999


Q ss_pred             cCCcC
Q 015490          373 EDKKK  377 (406)
Q Consensus       373 ~~~~~  377 (406)
                      ++|++
T Consensus       336 ~tGtr  340 (340)
T 4aow_A          336 TIGTR  340 (340)
T ss_dssp             EC---
T ss_pred             CCcCC
Confidence            99864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=6.5e-38  Score=289.03  Aligned_cols=260  Identities=15%  Similarity=0.227  Sum_probs=210.8

Q ss_pred             EecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccc----eeee---cccccCcEEEEEECCCCCE
Q 015490          109 LRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISE----KVLS---QLENVGQQLALTFDSEGTI  181 (406)
Q Consensus       109 ~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~v~~~~~s~~g~~  181 (406)
                      ..+|...|.+++|+|+|++|++++++.+++|++.  +++....+......    ....   ...+...|.+++|+|+|++
T Consensus        60 ~~~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~--~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~  137 (393)
T 1erj_A           60 SLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVS--DGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF  137 (393)
T ss_dssp             EEECSSCCCEEEECTTSSEEEEECBSCEEEEETT--TCCEEEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred             ecCCCCEEEEEEECCCCCEEEEEcCCcEEEEEec--CCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCE
Confidence            3469999999999999999999888888887654  33333332211000    0000   0012235899999999999


Q ss_pred             EEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEE
Q 015490          182 FAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFS  261 (406)
Q Consensus       182 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  261 (406)
                      |++|+.|+.|++||+.+++....+.+|...|.+++|+|++++|++++.|++|++||+++++....+..  ...+.+++|+
T Consensus       138 l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~--~~~v~~~~~~  215 (393)
T 1erj_A          138 LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI--EDGVTTVAVS  215 (393)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC--SSCEEEEEEC
T ss_pred             EEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEc--CCCcEEEEEE
Confidence            99999999999999999999888888989999999999999999999999999999999988777653  3458899999


Q ss_pred             c-CCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEe-------eecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCce
Q 015490          262 P-LNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTK-------QVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQ  333 (406)
Q Consensus       262 ~-~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~-------~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~  333 (406)
                      | ++.      .+++++.|+.|++||+++++.+..+       ..|...|.+++|+|++++|++|+.|+.|++||+++..
T Consensus       216 ~~~~~------~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~  289 (393)
T 1erj_A          216 PGDGK------YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN  289 (393)
T ss_dssp             STTCC------EEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----
T ss_pred             CCCCC------EEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCC
Confidence            9 555      4567788999999999998887766       4678899999999999999999999999999997532


Q ss_pred             ------------EEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCC
Q 015490          334 ------------VRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSG  379 (406)
Q Consensus       334 ------------~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~  379 (406)
                                  ....+. +|...|.+++|+|++++|++|+.|+.|++||+.+++.+.
T Consensus       290 ~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~  346 (393)
T 1erj_A          290 NKSDSKTPNSGTCEVTYI-GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL  346 (393)
T ss_dssp             -----------CEEEEEE-CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CcccccCCCCCcceEEEe-cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEE
Confidence                        334454 799999999999999999999999999999999887643

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.2e-37  Score=276.21  Aligned_cols=256  Identities=15%  Similarity=0.156  Sum_probs=203.4

Q ss_pred             eEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCC--CCEE
Q 015490          107 AELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSE--GTIF  182 (406)
Q Consensus       107 ~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~--g~~l  182 (406)
                      ..+.+|.+.|.+++|+|+|++|++++ |+.++||+++....            +.+..+. |.+.|.+++|+++  +++|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~------------~~~~~l~gH~~~V~~v~~s~~~~g~~l   70 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH------------KLIDTLTGHEGPVWRVDWAHPKFGTIL   70 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB------------CCCEEECCCSSCEEEEEECCGGGCSEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc------------EEEEEEccccCCeEEEEecCCCcCCEE
Confidence            45789999999999999999999998 99999988764322            2223333 4588999999874  8999


Q ss_pred             EEeeCCCeEEEEeCCCcc--eEeeeeccCCceeEEEEccC--CCEEEEEeCCCCEEEEEcCCCee--eeecccCCcceEE
Q 015490          183 AAGSENGNLRVFKWPSLE--IILNESEAHASVKDLSFSPD--GKFLVSLGNRGPGRVWDLASSAV--ATPLAKENDELFA  256 (406)
Q Consensus       183 ~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~~--~~~l~s~s~d~~i~iwd~~~~~~--~~~~~~~~~~~~~  256 (406)
                      ++|+.|++|++||+++++  ....+..|...|.+++|+|+  +.+|++++.|+.|++||++++..  ...+. .+...+.
T Consensus        71 ~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~-~h~~~v~  149 (297)
T 2pm7_B           71 ASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVN  149 (297)
T ss_dssp             EEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEE-CCSSCEE
T ss_pred             EEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeee-cccCccc
Confidence            999999999999998774  44556667789999999997  88999999999999999987642  22233 3456789


Q ss_pred             EEEEEcCCCCce-------EEEEEEEcCCCcEEEEEeCCCce----EEEEeeecCCCeEEEEEcCCC---CEEEEEeCCC
Q 015490          257 SCRFSPLNNEDY-------VLYIAAITDRGASIVTWNTTTWK----RIRTKQVVREPVSSFNVSADG---KLLAVGTASG  322 (406)
Q Consensus       257 ~~~~~~~~~~~~-------~l~~~~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~i~~~~~sp~~---~~l~~~~~dg  322 (406)
                      +++|+|+.....       .--.+++++.|+.|++||+++++    ....+.+|...|.+++|+|++   ++|++++.|+
T Consensus       150 ~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~  229 (297)
T 2pm7_B          150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDR  229 (297)
T ss_dssp             EEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS
T ss_pred             eEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCC
Confidence            999999741000       00045677889999999998755    567788899999999999984   8999999999


Q ss_pred             cEEEEECCCce---EEEEee-cccccceEEEEEcCCCCeEEEEECCCcEEEEEecCC
Q 015490          323 DISIIDSSSLQ---VRTAVK-KAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDK  375 (406)
Q Consensus       323 ~i~i~d~~~~~---~~~~~~-~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~  375 (406)
                      +|++||+++..   ....+. ..|...|.+++|+|+|++|++++.|++|++|+....
T Consensus       230 ~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~  286 (297)
T 2pm7_B          230 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  286 (297)
T ss_dssp             CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred             cEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCC
Confidence            99999997642   112221 367889999999999999999999999999998743

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.3e-37  Score=280.29  Aligned_cols=256  Identities=14%  Similarity=0.151  Sum_probs=210.8

Q ss_pred             cceeEEecCCC-CceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCE
Q 015490          104 QPVAELRTDSD-LPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTI  181 (406)
Q Consensus       104 ~~~~~~~~h~~-~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  181 (406)
                      +.+.++.+|.+ .|.+++|+|+|++|++++ |+.++||+.+......          .......|...|.+++|+|++++
T Consensus         6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~----------~~~~~~~h~~~v~~~~~sp~g~~   75 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWIC----------KSVLSEGHQRTVRKVAWSPCGNY   75 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEE----------EEEECSSCSSCEEEEEECTTSSE
T ss_pred             EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCccee----------eeeeccccCCcEEEEEECCCCCE
Confidence            46678889998 999999999999999988 9999999876431100          01111235588999999999999


Q ss_pred             EEEeeCCCeEEEEeCCCcc--eEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCee---eeecccCCcceEE
Q 015490          182 FAAGSENGNLRVFKWPSLE--IILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAV---ATPLAKENDELFA  256 (406)
Q Consensus       182 l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~---~~~~~~~~~~~~~  256 (406)
                      |++|+.|++|++||+.++.  .+..+.+|...|.+++|+|++++|++++.|++|++||++++..   ...+. .+...+.
T Consensus        76 l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~h~~~v~  154 (345)
T 3fm0_A           76 LASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLN-SHTQDVK  154 (345)
T ss_dssp             EEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEEC-CCCSCEE
T ss_pred             EEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEec-CcCCCeE
Confidence            9999999999999987764  5667778888999999999999999999999999999987643   33444 3455689


Q ss_pred             EEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCce--EEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---
Q 015490          257 SCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK--RIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSS---  331 (406)
Q Consensus       257 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~---  331 (406)
                      +++|+|++..      +++++.|+.|++||.++++  +...+.+|...|.+++|+|+|++|++++.|++|++||...   
T Consensus       155 ~~~~~p~~~~------l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~  228 (345)
T 3fm0_A          155 HVVWHPSQEL------LASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGN  228 (345)
T ss_dssp             EEEECSSSSC------EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTC
T ss_pred             EEEECCCCCE------EEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCC
Confidence            9999999984      5667789999999998765  4567888999999999999999999999999999999632   


Q ss_pred             ------------ceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490          332 ------------LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       332 ------------~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~  376 (406)
                                  .+.+..+...|...|.+++|+|++..|++++.|+.|++|++..+.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~  285 (345)
T 3fm0_A          229 EQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNS  285 (345)
T ss_dssp             TTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTS
T ss_pred             CccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCC
Confidence                        133444443488999999999999999999999999999997654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.6e-37  Score=280.82  Aligned_cols=257  Identities=11%  Similarity=0.138  Sum_probs=216.2

Q ss_pred             cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEE
Q 015490          104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIF  182 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  182 (406)
                      ....++.+|.+.|++++|+|++++|++++ |+.+++|+..  ++.....+           ..+...|.+++|+|+|.++
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~--~~~~~~~~-----------~~~~~~v~~~~~sp~g~~l  121 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSF--TTNKEHAV-----------TMPCTWVMACAYAPSGCAI  121 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT--TCCEEEEE-----------ECSSSCCCEEEECTTSSEE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECC--CCCcceEE-----------ecCCCCEEEEEECCCCCEE
Confidence            46778999999999999999999999998 8888887643  22222111           1244679999999999999


Q ss_pred             EEeeCCCeEEEEeCCCc------ceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEE
Q 015490          183 AAGSENGNLRVFKWPSL------EIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFA  256 (406)
Q Consensus       183 ~~~~~dg~i~vwd~~~~------~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~  256 (406)
                      ++|+.|+.+++|++...      .....+..|...|.+++|+|++..|++++.|++|++||+++++.+..+..+ ...+.
T Consensus       122 asg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h-~~~v~  200 (354)
T 2pbi_B          122 ACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGH-GADVL  200 (354)
T ss_dssp             EEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEE
T ss_pred             EEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCC-CCCeE
Confidence            99999999999998643      234455678889999999999999999999999999999999998888765 45688


Q ss_pred             EEEEEcCCC-CceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEE
Q 015490          257 SCRFSPLNN-EDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVR  335 (406)
Q Consensus       257 ~~~~~~~~~-~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~  335 (406)
                      +++|+|+.. .     .+++++.|+.|++||+++++++..+..|...|.+++|+|++++|++|+.|++|++||+++.+.+
T Consensus       201 ~~~~~~~~~g~-----~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~  275 (354)
T 2pbi_B          201 CLDLAPSETGN-----TFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV  275 (354)
T ss_dssp             EEEECCCSSCC-----EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             EEEEEeCCCCC-----EEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            899988532 2     4567788999999999999999999999999999999999999999999999999999998877


Q ss_pred             EEeec-ccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCC
Q 015490          336 TAVKK-AHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSG  379 (406)
Q Consensus       336 ~~~~~-~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~  379 (406)
                      ..+.. .+...+.+++|+|++++|++++.|++|++||+.+++.+.
T Consensus       276 ~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~  320 (354)
T 2pbi_B          276 AIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVS  320 (354)
T ss_dssp             EEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEE
T ss_pred             EEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEE
Confidence            66641 233578999999999999999999999999998877543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.6e-37  Score=285.18  Aligned_cols=272  Identities=14%  Similarity=0.121  Sum_probs=219.0

Q ss_pred             EEEEEEecCCCCccccceeEEecCCCCceEEEEccC----C---CeEEEEe-cCCeEEEEEecccccceeecceecccee
Q 015490           89 VLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPH----G---DGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKV  160 (406)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~----~---~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~  160 (406)
                      +.++.++..........+..+.+|...|.+++|+|+    +   .+|++++ ++.+++|+++.....         ....
T Consensus        38 i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~---------~~~~  108 (397)
T 1sq9_A           38 LKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDET---------KKVI  108 (397)
T ss_dssp             EEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTT---------CCEE
T ss_pred             EEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccc---------cccc
Confidence            444444333222233468889999999999999999    9   8999887 899999887753210         0001


Q ss_pred             eecccc------cCcEEEEEEC----CCCCE-EEEeeCCCeEEEEeCCC------cceEe-----eee-------ccCCc
Q 015490          161 LSQLEN------VGQQLALTFD----SEGTI-FAAGSENGNLRVFKWPS------LEIIL-----NES-------EAHAS  211 (406)
Q Consensus       161 ~~~~~~------~~~v~~~~~s----~~g~~-l~~~~~dg~i~vwd~~~------~~~~~-----~~~-------~~~~~  211 (406)
                      ...+..      ...|.+++|+    |++++ |++++.||.|++||+.+      ++.+.     .+.       .+...
T Consensus       109 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (397)
T 1sq9_A          109 FEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF  188 (397)
T ss_dssp             EEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCC
T ss_pred             ceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCC
Confidence            222222      3789999999    99999 99999999999999988      66554     553       35668


Q ss_pred             eeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeeccc---C--CcceEEEEEEEcCCCCceEEEEEEEcCCC---cEEE
Q 015490          212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAK---E--NDELFASCRFSPLNNEDYVLYIAAITDRG---ASIV  283 (406)
Q Consensus       212 i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~i~  283 (406)
                      |.+++|+|++ +|++++.|+.|++||+++++.+..+..   +  ....+.+++|+|++..      +++++.+   +.|+
T Consensus       189 i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~------l~~~~~d~~~g~i~  261 (397)
T 1sq9_A          189 ATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL------LAIAHDSNSFGCIT  261 (397)
T ss_dssp             CCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTE------EEEEEEETTEEEEE
T ss_pred             ceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCE------EEEEecCCCCceEE
Confidence            9999999999 999999999999999999998888775   3  0557899999999873      4455667   9999


Q ss_pred             EEeCCCceEEEEeee-------------cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeec-----cc---
Q 015490          284 TWNTTTWKRIRTKQV-------------VREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKK-----AH---  342 (406)
Q Consensus       284 ~~d~~~~~~~~~~~~-------------~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~---  342 (406)
                      +||+++++.+..+..             |...|.+++|+|++++|++++.||.|++||+.+++.+..+..     .|   
T Consensus       262 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  341 (397)
T 1sq9_A          262 LYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEED  341 (397)
T ss_dssp             EEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGG
T ss_pred             EEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhh
Confidence            999999999999988             899999999999999999999999999999999999888851     45   


Q ss_pred             ------------ccceEEEEEcCCC----------CeEEEEECCCcEEEEEecCCc
Q 015490          343 ------------LGIVTALAFSYDS----------RALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       343 ------------~~~v~~~~~sp~~----------~~l~s~s~dg~i~iw~~~~~~  376 (406)
                                  ...|.+++|+|++          ++|++++.||.|++|++++++
T Consensus       342 ~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          342 ILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             CCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             hhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence                        8999999999998          799999999999999998874

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.9e-36  Score=294.84  Aligned_cols=277  Identities=18%  Similarity=0.243  Sum_probs=227.4

Q ss_pred             CCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEecC---CeEEEEEec
Q 015490           67 RRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQN---SCRLFEWDE  143 (406)
Q Consensus        67 ~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~---~~~i~~~~~  143 (406)
                      |++++++.++..+          .+..|+.....  ......+.+|.+.|.+++|+|+++.|++++++   ...+|.|+.
T Consensus        69 pdg~~lasg~~d~----------~v~lWd~~~~~--~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~  136 (611)
T 1nr0_A           69 PSGYYCASGDVHG----------NVRIWDTTQTT--HILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT  136 (611)
T ss_dssp             TTSSEEEEEETTS----------EEEEEESSSTT--CCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT
T ss_pred             CCCcEEEEEeCCC----------CEEEeECCCCc--ceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC
Confidence            3677777665433          45556653321  13456788999999999999999999988733   367888874


Q ss_pred             ccccceeecceeccceeeeccc-ccCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCC
Q 015490          144 VENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGT-IFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDG  221 (406)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~  221 (406)
                      .  ..            ...+. |...|.+++|+|++. .|++|+.|++|++||..+++....+.+|...|++++|+|++
T Consensus       137 ~--~~------------~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg  202 (611)
T 1nr0_A          137 G--TS------------NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG  202 (611)
T ss_dssp             C--CB------------CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTS
T ss_pred             C--CC------------cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCC
Confidence            2  11            11223 457899999999986 69999999999999999998888888898999999999999


Q ss_pred             CEEEEEeCCCCEEEEEcCCCeeeeeccc------CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEE
Q 015490          222 KFLVSLGNRGPGRVWDLASSAVATPLAK------ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRT  295 (406)
Q Consensus       222 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~  295 (406)
                      ++|++++.|++|++||+.+++....+..      .|...+.+++|+|+++.      +++++.|+.|++||+++++.+..
T Consensus       203 ~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~------l~s~s~D~~v~lWd~~~~~~~~~  276 (611)
T 1nr0_A          203 SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK------IASASADKTIKIWNVATLKVEKT  276 (611)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSE------EEEEETTSEEEEEETTTTEEEEE
T ss_pred             CEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCE------EEEEeCCCeEEEEeCCCCceeee
Confidence            9999999999999999999988877742      45668999999999983      56778899999999988765543


Q ss_pred             -------------------------------------------eeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCc
Q 015490          296 -------------------------------------------KQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSL  332 (406)
Q Consensus       296 -------------------------------------------~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~  332 (406)
                                                                 +.+|...|.+++|+|+|++|++++.|++|++||+.++
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~  356 (611)
T 1nr0_A          277 IPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG  356 (611)
T ss_dssp             EECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             ecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Confidence                                                       3457788999999999999999999999999999999


Q ss_pred             eEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490          333 QVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       333 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~  376 (406)
                      +....+..+|...|.+++|++++ .+++++.|+++++|++.++.
T Consensus       357 ~~~~~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~  399 (611)
T 1nr0_A          357 ISNRVFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSG  399 (611)
T ss_dssp             CEEECSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSS
T ss_pred             ceeeecccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCcc
Confidence            88776645799999999999876 68899999999999987754

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.7e-36  Score=293.66  Aligned_cols=263  Identities=19%  Similarity=0.307  Sum_probs=220.2

Q ss_pred             CCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEeccc
Q 015490           67 RRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVE  145 (406)
Q Consensus        67 ~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~  145 (406)
                      ++++.+++++..+          .+..|+...     ..+..+.+|...|.+++|+|+++++++++ ++.+++|+.+   
T Consensus       313 ~~~~~l~t~~~d~----------~i~~w~~~~-----~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~---  374 (577)
T 2ymu_A          313 PDGQTIASASDDK----------TVKLWNRNG-----QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN---  374 (577)
T ss_dssp             TTSSEEEEEETTS----------CEEEEETTS-----CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT---
T ss_pred             CCCCEEEEEeCCC----------eEEEEeCCC-----CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC---
Confidence            3566666654433          244455443     45677889999999999999999999987 7778887632   


Q ss_pred             ccceeecceeccceeeeccc-ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEE
Q 015490          146 NTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFL  224 (406)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  224 (406)
                      ++            .+..+. +...|.+++|+|++++|++++.|+.|++||. +++.+..+..|...|++++|+||+++|
T Consensus       375 ~~------------~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l  441 (577)
T 2ymu_A          375 GQ------------LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTI  441 (577)
T ss_dssp             CC------------EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             CC------------EEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEE
Confidence            22            222222 4578999999999999999999999999995 567777888888899999999999999


Q ss_pred             EEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeE
Q 015490          225 VSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVS  304 (406)
Q Consensus       225 ~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~  304 (406)
                      ++++.|+.|++||. +++....+..+ ...+.+++|+|+++      .+++++.|+.|++||. +++.+..+..|...|+
T Consensus       442 ~~~~~d~~v~~w~~-~~~~~~~~~~~-~~~v~~~~~spd~~------~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~  512 (577)
T 2ymu_A          442 ASASDDKTVKLWNR-NGQLLQTLTGH-SSSVRGVAFSPDGQ------TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVR  512 (577)
T ss_dssp             EEEETTSEEEEEET-TSCEEEEEECC-SSCEEEEEECTTSC------EEEEEETTSEEEEEET-TSCEEEEEECCSSCEE
T ss_pred             EEEcCCCEEEEEEC-CCCEEEEEcCC-CCCEEEEEEcCCCC------EEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEE
Confidence            99999999999997 55666666654 55689999999998      3566778999999995 5688899999999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEE
Q 015490          305 SFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTV  371 (406)
Q Consensus       305 ~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~  371 (406)
                      +++|+|+|++|++++.||.|++||. +++.+..+. +|.+.|++++|+|||++|+|++.|++|++||
T Consensus       513 ~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~-~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          513 GVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             EEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            9999999999999999999999996 577888886 8999999999999999999999999999997

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=5.4e-36  Score=271.11  Aligned_cols=265  Identities=15%  Similarity=0.200  Sum_probs=210.1

Q ss_pred             cceeEEecCCCCceEEEE-----cc-CCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEE
Q 015490          104 QPVAELRTDSDLPYRMAI-----HP-HGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTF  175 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~-----sp-~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~  175 (406)
                      .....+.+|.+.|++++|     ++ ++++|++++ |+.+++|++........       .......+. |...|.+++|
T Consensus        12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~-------~~~~~~~l~~h~~~V~~~~~   84 (343)
T 2xzm_R           12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY-------FGIPHKALTGHNHFVSDLAL   84 (343)
T ss_dssp             EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB-------SEEEEEEECCCSSCEEEEEE
T ss_pred             eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc-------cccccchhccCCCceEEEEE
Confidence            456689999999999999     77 899999998 99999998764321100       112223333 4478999999


Q ss_pred             CCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeec-ccCCcce
Q 015490          176 DSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPL-AKENDEL  254 (406)
Q Consensus       176 s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~~~~~~  254 (406)
                      +|++.++++|+.|++|++||+++++....+.+|...|.+++|+|++++|++++.|++|++||+......... ...+...
T Consensus        85 ~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~  164 (343)
T 2xzm_R           85 SQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDW  164 (343)
T ss_dssp             CSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSC
T ss_pred             CCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCce
Confidence            999999999999999999999999999899999999999999999999999999999999999744332222 1245567


Q ss_pred             EEEEEEEcCCCCceE----EEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 015490          255 FASCRFSPLNNEDYV----LYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSS  330 (406)
Q Consensus       255 ~~~~~~~~~~~~~~~----l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~  330 (406)
                      +.+++|+|++.....    --.+++++.|+.|++||. ..+....+..|...|.+++|+|+|++|++|+.||.|++||+.
T Consensus       165 v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~  243 (343)
T 2xzm_R          165 VSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDIL  243 (343)
T ss_dssp             EEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESS
T ss_pred             eeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECC
Confidence            899999998731000    003566778999999994 457777888999999999999999999999999999999994


Q ss_pred             C-ceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCC
Q 015490          331 S-LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSG  379 (406)
Q Consensus       331 ~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~  379 (406)
                      + ......+.  +...|.+++|+|+++++++ +.|+.|++|++.+++...
T Consensus       244 ~~~~~~~~~~--~~~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~  290 (343)
T 2xzm_R          244 NLTYPQREFD--AGSTINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAP  290 (343)
T ss_dssp             CCSSCSEEEE--CSSCEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCS
T ss_pred             CCcccceeec--CCCcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCc
Confidence            4 44444443  5567999999999987765 568889999998876543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.1e-37  Score=283.62  Aligned_cols=256  Identities=20%  Similarity=0.216  Sum_probs=201.1

Q ss_pred             EEecCCCCceEEEEccCCCeEEEEecC-----CeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEE
Q 015490          108 ELRTDSDLPYRMAIHPHGDGIICALQN-----SCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIF  182 (406)
Q Consensus       108 ~~~~h~~~v~~~~~sp~~~~l~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  182 (406)
                      ....|+..|.+++|+|||++|+++++.     +..+|.|+..++.....       .......+...|.+++|+|+++++
T Consensus        37 ~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~-------~~~~~~~~~~~V~~~~~s~d~~~l  109 (357)
T 4g56_B           37 APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNES-------LCTAGVQTEAGVTDVAWVSEKGIL  109 (357)
T ss_dssp             ---CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGG-------GCSEEEECSSCEEEEEEETTTEEE
T ss_pred             CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCccee-------EecccCCCCCCEEEEEEcCCCCEE
Confidence            345799999999999999999998743     34566676554432211       112233466889999999998654


Q ss_pred             EEeeCCCeEEEEeCCCcceEe----eeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEE
Q 015490          183 AAGSENGNLRVFKWPSLEIIL----NESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASC  258 (406)
Q Consensus       183 ~~~~~dg~i~vwd~~~~~~~~----~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  258 (406)
                       +++.||+|++||+.+++...    ...+|...|++++|+|++++|++++.|+.|++||+++++.+..+..+ ...+.++
T Consensus       110 -~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h-~~~v~~v  187 (357)
T 4g56_B          110 -VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAH-SSEVNCV  187 (357)
T ss_dssp             -EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEE
T ss_pred             -EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC-CCCEEEE
Confidence             67789999999998876543    23356779999999999999999999999999999999999888764 4568999


Q ss_pred             EEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEee--ecCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCceEE
Q 015490          259 RFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQ--VVREPVSSFNVSAD-GKLLAVGTASGDISIIDSSSLQVR  335 (406)
Q Consensus       259 ~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~i~~~~~sp~-~~~l~~~~~dg~i~i~d~~~~~~~  335 (406)
                      +|++++..     ++++++.|+.|++||+++++....+.  .+...+.+++|+|+ +.+|++|+.|+.|++||+++++.+
T Consensus       188 ~~s~~~~~-----~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~  262 (357)
T 4g56_B          188 AACPGKDT-----IFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSA  262 (357)
T ss_dssp             EECTTCSS-----CEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGC
T ss_pred             EEccCCCc-----eeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEe
Confidence            99999875     45666789999999999988766554  34567999999997 568999999999999999999988


Q ss_pred             EEeecccccceEEEEEcCCC-CeEEEEECCCcEEEEEecCCcCC
Q 015490          336 TAVKKAHLGIVTALAFSYDS-RALVSASMDSSVRVTVIEDKKKS  378 (406)
Q Consensus       336 ~~~~~~~~~~v~~~~~sp~~-~~l~s~s~dg~i~iw~~~~~~~~  378 (406)
                      ..+. +|...|++++|+|++ ++|++|+.|++|+|||+++++.+
T Consensus       263 ~~~~-~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~  305 (357)
T 4g56_B          263 QTSA-VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF  305 (357)
T ss_dssp             EEEC-CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE
T ss_pred             EEEe-ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe
Confidence            8885 899999999999987 67999999999999999987654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.7e-36  Score=270.78  Aligned_cols=255  Identities=15%  Similarity=0.172  Sum_probs=216.4

Q ss_pred             cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCCE
Q 015490          104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTI  181 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~  181 (406)
                      ....++.+|.+.|++++|+|++++|++++ |+.+++|+...  ++            ....+. |...|.+++|+|++++
T Consensus        14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~--~~------------~~~~~~~h~~~v~~~~~~~~~~~   79 (312)
T 4ery_A           14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD--GK------------FEKTISGHKLGISDVAWSSDSNL   79 (312)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--CC------------EEEEECCCSSCEEEEEECTTSSE
T ss_pred             eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCC--cc------------cchhhccCCCceEEEEEcCCCCE
Confidence            45667899999999999999999999988 88888876542  22            222222 4578999999999999


Q ss_pred             EEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEE
Q 015490          182 FAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFS  261 (406)
Q Consensus       182 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  261 (406)
                      |++|+.|+.|++||+++++.+..+..|...|.+++|+|++++|++++.|+.|++||+++++....+..+ ...+.+++|+
T Consensus        80 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~  158 (312)
T 4ery_A           80 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH-SDPVSAVHFN  158 (312)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEEC
T ss_pred             EEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCC-CCcEEEEEEc
Confidence            999999999999999999999899889889999999999999999999999999999999988887754 4568899999


Q ss_pred             cCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEee-ecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeec
Q 015490          262 PLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQ-VVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKK  340 (406)
Q Consensus       262 ~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  340 (406)
                      |+++.      +++++.|+.|++||+++++.+..+. .+...+..++|+|++++|++++.|+.|++||+.+++.+..+. 
T Consensus       159 ~~~~~------l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-  231 (312)
T 4ery_A          159 RDGSL------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-  231 (312)
T ss_dssp             TTSSE------EEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC-
T ss_pred             CCCCE------EEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEE-
Confidence            99873      4566789999999999988877764 345679999999999999999999999999999999888885 


Q ss_pred             ccccceE---EEEEcCCCCeEEEEECCCcEEEEEecCCcCCCC
Q 015490          341 AHLGIVT---ALAFSYDSRALVSASMDSSVRVTVIEDKKKSGG  380 (406)
Q Consensus       341 ~~~~~v~---~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~  380 (406)
                      +|...+.   .....+++.+|++|+.||.|++||+.+++.+..
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~  274 (312)
T 4ery_A          232 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK  274 (312)
T ss_dssp             SSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEE
T ss_pred             ecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhh
Confidence            6665432   233346789999999999999999998876543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=8.2e-36  Score=268.59  Aligned_cols=271  Identities=14%  Similarity=0.165  Sum_probs=222.1

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEe--cCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELR--TDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEV  144 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~  144 (406)
                      +++++++++ .|          .+..|+...... ...+..+.  +|...|.+++|+|+++++++++ ++.+++|+++..
T Consensus        62 ~~~~l~~~~-dg----------~i~iw~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~  129 (337)
T 1gxr_A           62 PTRHVYTGG-KG----------CVKVWDISHPGN-KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP  129 (337)
T ss_dssp             SSSEEEEEC-BS----------EEEEEETTSTTC-CSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC
T ss_pred             CCcEEEEcC-CC----------eEEEEECCCCCc-eeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Confidence            666766653 22          345555544321 22334444  8999999999999999999887 788888776543


Q ss_pred             cccceeecceeccceeeecc-cccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCE
Q 015490          145 ENTEIRRLGVKISEKVLSQL-ENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKF  223 (406)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~  223 (406)
                      ..            .....+ .+...+.+++|+|+++++++++.||.|++||+++++....+..|...|.+++|+|++++
T Consensus       130 ~~------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  197 (337)
T 1gxr_A          130 TP------------RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK  197 (337)
T ss_dssp             --------------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred             Cc------------ceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCE
Confidence            21            111222 24577999999999999999999999999999999988888888889999999999999


Q ss_pred             EEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCe
Q 015490          224 LVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPV  303 (406)
Q Consensus       224 l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i  303 (406)
                      |++++.|+.|++||+++++....+.  +...+.+++|+|+++.      +++++.++.|++||+++++.. .+..|...+
T Consensus       198 l~~~~~dg~i~~~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~------l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v  268 (337)
T 1gxr_A          198 LWTGGLDNTVRSWDLREGRQLQQHD--FTSQIFSLGYCPTGEW------LAVGMESSNVEVLHVNKPDKY-QLHLHESCV  268 (337)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECTTSSE------EEEEETTSCEEEEETTSSCEE-EECCCSSCE
T ss_pred             EEEEecCCcEEEEECCCCceEeeec--CCCceEEEEECCCCCE------EEEEcCCCcEEEEECCCCCeE-EEcCCccce
Confidence            9999999999999999998887764  3456889999999983      455567899999999987754 566788999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490          304 SSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       304 ~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~  373 (406)
                      .+++|+|++++|++++.||.|++||+.+++.+...  .|...|.+++|+|++++|++++.||.|++|++.
T Consensus       269 ~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          269 LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS--KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE--ECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             eEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe--cCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence            99999999999999999999999999999888665  488999999999999999999999999999974

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.9e-36  Score=274.07  Aligned_cols=276  Identities=12%  Similarity=0.194  Sum_probs=209.9

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCC-CccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEeccc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASN-SLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVE  145 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~  145 (406)
                      ++++++.++..+        .+.++.+..... .....+...+.+|...|.+++|+|++.++++++ |+.+++|++..  
T Consensus        38 d~~~l~sgs~D~--------~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~--  107 (343)
T 2xzm_R           38 DSPVLISGSRDK--------TVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRT--  107 (343)
T ss_dssp             CCCEEEEEETTS--------CEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTS--
T ss_pred             CCCEEEEEcCCC--------EEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC--
Confidence            456666554332        345555443221 112346678999999999999999999999988 88888876542  


Q ss_pred             ccceeecceeccceeeeccc-ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeee---ccCCceeEEEEccCC
Q 015490          146 NTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNES---EAHASVKDLSFSPDG  221 (406)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~~i~~~~~s~~~  221 (406)
                      ++            .+..+. |...|.+++|+|++++|++++.|++|++||+... ......   .|...|.+++|+|++
T Consensus       108 ~~------------~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~  174 (343)
T 2xzm_R          108 GT------------TYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSPIM  174 (343)
T ss_dssp             SC------------EEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECCCC
T ss_pred             Cc------------EEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeeecccc
Confidence            22            223333 5588999999999999999999999999999743 332332   456689999999987


Q ss_pred             ----------CEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC-c
Q 015490          222 ----------KFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT-W  290 (406)
Q Consensus       222 ----------~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~-~  290 (406)
                                .+|++++.|+.|++||. ..+....+..+ ...+.+++|+|+++      .+++++.|+.|++||+.. .
T Consensus       175 ~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h-~~~v~~~~~s~~g~------~l~sgs~dg~v~iwd~~~~~  246 (343)
T 2xzm_R          175 KSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAH-ESNVNHLSISPNGK------YIATGGKDKKLLIWDILNLT  246 (343)
T ss_dssp             CSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECC-SSCEEEEEECTTSS------EEEEEETTCEEEEEESSCCS
T ss_pred             ccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCc-cccceEEEECCCCC------EEEEEcCCCeEEEEECCCCc
Confidence                      78999999999999994 45555555544 55789999999998      356778899999999954 3


Q ss_pred             eEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEE--Eee----------cccccceEEEEEcCCCCeE
Q 015490          291 KRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRT--AVK----------KAHLGIVTALAFSYDSRAL  358 (406)
Q Consensus       291 ~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~----------~~~~~~v~~~~~sp~~~~l  358 (406)
                      .....+ .+...|.+++|+|++++++++ .|+.|++||+.+++...  .+.          .+|...|.+++|+|+|++|
T Consensus       247 ~~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l  324 (343)
T 2xzm_R          247 YPQREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKL  324 (343)
T ss_dssp             SCSEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCE
T ss_pred             ccceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeE
Confidence            333333 345679999999999988765 57789999998765433  221          1577889999999999999


Q ss_pred             EEEECCCcEEEEEecCCc
Q 015490          359 VSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       359 ~s~s~dg~i~iw~~~~~~  376 (406)
                      ++|+.||.|++|++++++
T Consensus       325 ~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          325 FAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             EEEETTSEEEEEEEEEEE
T ss_pred             EEecCCceEEEEEEEccC
Confidence            999999999999998764

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-36  Score=272.59  Aligned_cols=250  Identities=12%  Similarity=0.175  Sum_probs=201.2

Q ss_pred             cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecc--c-ccCcEEEEEECCCC
Q 015490          104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQL--E-NVGQQLALTFDSEG  179 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~v~~~~~s~~g  179 (406)
                      +.+..+.+|.+.|.+++|+|+  +|++++ |+.+++|++.....            .....+  . |...|.+++|+|++
T Consensus         5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~------------~~~~~~~~~~h~~~v~~v~~sp~~   70 (330)
T 2hes_X            5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF------------TLIDVLDETAHKKAIRSVAWRPHT   70 (330)
T ss_dssp             EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC------------EEEEEECTTCCCSCEEEEEECTTS
T ss_pred             ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe------------EEEEEEecCCccCCEEEEEECCCC
Confidence            467789999999999999997  788877 89999988754211            111112  2 56789999999999


Q ss_pred             CEEEEeeCCCeEEEEeCCC-------cceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCC----eeeeecc
Q 015490          180 TIFAAGSENGNLRVFKWPS-------LEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASS----AVATPLA  248 (406)
Q Consensus       180 ~~l~~~~~dg~i~vwd~~~-------~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~----~~~~~~~  248 (406)
                      ++|++|+.|++|++||++.       .+....+.+|...|.+++|+|++++|++++.|++|++||++..    +.+..+.
T Consensus        71 ~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~  150 (330)
T 2hes_X           71 SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ  150 (330)
T ss_dssp             SEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC
T ss_pred             CEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec
Confidence            9999999999999999853       3455667788889999999999999999999999999999532    3445555


Q ss_pred             cCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc--eEEEEeeecCCCeEEEEEcCC--CCEEEEEeCCCcE
Q 015490          249 KENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW--KRIRTKQVVREPVSSFNVSAD--GKLLAVGTASGDI  324 (406)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~i~~~~~sp~--~~~l~~~~~dg~i  324 (406)
                      . +...+.+++|+|++.      .+++++.|+.|++||..++  +++..+.+|...|.+++|+|+  +.+|++|+.|++|
T Consensus       151 ~-h~~~v~~v~~~p~~~------~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v  223 (330)
T 2hes_X          151 E-HSQDVKHVIWHPSEA------LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTV  223 (330)
T ss_dssp             C-CSSCEEEEEECSSSS------EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCE
T ss_pred             c-CCCceEEEEECCCCC------EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeE
Confidence            4 455789999999987      3567788999999998765  678888999999999999998  7799999999999


Q ss_pred             EEEECCCc--------eEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCC
Q 015490          325 SIIDSSSL--------QVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDK  375 (406)
Q Consensus       325 ~i~d~~~~--------~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~  375 (406)
                      ++||+.++        .....+...|...|.+++|++++ +|++++.||+|++|++.++
T Consensus       224 ~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~  281 (330)
T 2hes_X          224 RVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG  281 (330)
T ss_dssp             EEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred             EEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence            99998754        34444443489999999999765 8999999999999999876

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-36  Score=274.28  Aligned_cols=279  Identities=11%  Similarity=0.160  Sum_probs=230.3

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVEN  146 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~  146 (406)
                      +++++++++..|          .+..|+...    .+.+..+.+|...|.+++|+|++++|++++ ++.+++|++.    
T Consensus        43 ~~~~l~~~~~dg----------~i~vwd~~~----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~----  104 (369)
T 3zwl_B           43 EGDLLFSCSKDS----------SASVWYSLN----GERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS----  104 (369)
T ss_dssp             TSCEEEEEESSS----------CEEEEETTT----CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT----
T ss_pred             CCCEEEEEeCCC----------EEEEEeCCC----chhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC----
Confidence            566777664433          345555544    357788999999999999999999999987 7778887654    


Q ss_pred             cceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCC-----CeEEEEeCCCcc-----------eEeeeeccCC
Q 015490          147 TEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSEN-----GNLRVFKWPSLE-----------IILNESEAHA  210 (406)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-----g~i~vwd~~~~~-----------~~~~~~~~~~  210 (406)
                                ..+....+.+...+.+++|+|+++++++++.+     +.|++||+....           ....+..+..
T Consensus       105 ----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (369)
T 3zwl_B          105 ----------NGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEG  174 (369)
T ss_dssp             ----------TCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTT
T ss_pred             ----------CCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcC
Confidence                      22334444567889999999999999999998     999999986553           2233444444


Q ss_pred             --ceeEEEEccCCCEEEEEeCCCCEEEEEcCC-CeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeC
Q 015490          211 --SVKDLSFSPDGKFLVSLGNRGPGRVWDLAS-SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNT  287 (406)
Q Consensus       211 --~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~  287 (406)
                        .+.+++|+|++++|++++.|+.|++||+++ ++....+..+ ...+.+++|+|++..      +++++.++.|++||+
T Consensus       175 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~------l~~~~~d~~i~v~d~  247 (369)
T 3zwl_B          175 LDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLH-EKSISDMQFSPDLTY------FITSSRDTNSFLVDV  247 (369)
T ss_dssp             CCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECC-SSCEEEEEECTTSSE------EEEEETTSEEEEEET
T ss_pred             ccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecC-CCceeEEEECCCCCE------EEEecCCceEEEEEC
Confidence              899999999999999999999999999998 6666666654 556889999999873      455678999999999


Q ss_pred             CCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCC--------------cEEEEECCCceEEEEeecccccceEEEEEcC
Q 015490          288 TTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASG--------------DISIIDSSSLQVRTAVKKAHLGIVTALAFSY  353 (406)
Q Consensus       288 ~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg--------------~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp  353 (406)
                      ++++.+..+. +...+.+++|+|+++++++++.++              .+++||+.+++.+..+. +|...|.+++|+|
T Consensus       248 ~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~s~  325 (369)
T 3zwl_B          248 STLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ-GHFGPLNTVAISP  325 (369)
T ss_dssp             TTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEE-CCSSCEEEEEECT
T ss_pred             CCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhee-cccCcEEEEEECC
Confidence            9999888887 667899999999999999999988              89999999999999886 8999999999999


Q ss_pred             CCCeEEEEECCCcEEEEEecCCcCCCCchH
Q 015490          354 DSRALVSASMDSSVRVTVIEDKKKSGGLNL  383 (406)
Q Consensus       354 ~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~  383 (406)
                      ++++|++++.||.|++|+++++.....+..
T Consensus       326 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~  355 (369)
T 3zwl_B          326 QGTSYASGGEDGFIRLHHFEKSYFDFKYDV  355 (369)
T ss_dssp             TSSEEEEEETTSEEEEEEECHHHHTCCCHH
T ss_pred             CCCEEEEEcCCCeEEEEECccccchhHHHH
Confidence            999999999999999999998776555543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.9e-36  Score=276.72  Aligned_cols=279  Identities=11%  Similarity=0.113  Sum_probs=221.1

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVEN  146 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~  146 (406)
                      +++++++++..+        .+.+  |+.....  ...+..+.+|...|.+++|+|++++|++++ ++.+++|++.... 
T Consensus        19 ~~~~l~~~~~d~--------~v~i--~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-   85 (372)
T 1k8k_C           19 DRTQIAICPNNH--------EVHI--YEKSGNK--WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT-   85 (372)
T ss_dssp             TSSEEEEECSSS--------EEEE--EEEETTE--EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE-
T ss_pred             CCCEEEEEeCCC--------EEEE--EeCCCCc--EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe-
Confidence            666777664322        3444  4443321  136778899999999999999999999988 8899998875421 


Q ss_pred             cceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcce---Eeee-eccCCceeEEEEccCCC
Q 015490          147 TEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEI---ILNE-SEAHASVKDLSFSPDGK  222 (406)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~---~~~~-~~~~~~i~~~~~s~~~~  222 (406)
                       ..         .......+...|.+++|+|++++|++++.|+.|++||++.+..   ...+ ..|...|.+++|+|+++
T Consensus        86 -~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  155 (372)
T 1k8k_C           86 -WK---------PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV  155 (372)
T ss_dssp             -EE---------EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS
T ss_pred             -ee---------eeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC
Confidence             11         1112234567899999999999999999999999999987762   2233 44566999999999999


Q ss_pred             EEEEEeCCCCEEEEEcC------------------CCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEE
Q 015490          223 FLVSLGNRGPGRVWDLA------------------SSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVT  284 (406)
Q Consensus       223 ~l~s~s~d~~i~iwd~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~  284 (406)
                      +|++++.|+.|++||++                  .++....+.. +...+.+++|+|+++.      +++++.|+.|++
T Consensus       156 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~------l~~~~~d~~i~i  228 (372)
T 1k8k_C          156 LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS-SCGWVHGVCFSANGSR------VAWVSHDSTVCL  228 (372)
T ss_dssp             EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC-CSSCEEEEEECSSSSE------EEEEETTTEEEE
T ss_pred             EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCC-CCCeEEEEEECCCCCE------EEEEeCCCEEEE
Confidence            99999999999999953                  5667776664 4557899999999873      455678999999


Q ss_pred             EeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--ceE----------------------------
Q 015490          285 WNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSS--LQV----------------------------  334 (406)
Q Consensus       285 ~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~--~~~----------------------------  334 (406)
                      ||+++++.+..+..|...+.+++|+|+++++++| .|+.|++|++.+  ++.                            
T Consensus       229 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (372)
T 1k8k_C          229 ADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDK  307 (372)
T ss_dssp             EEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCC
T ss_pred             EECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccc
Confidence            9999999999999998999999999999988887 899999999987  421                            


Q ss_pred             ----E------EEeecccccceEEEEEc-CCC---CeEEEEECCCcEEEEEecCCcC
Q 015490          335 ----R------TAVKKAHLGIVTALAFS-YDS---RALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       335 ----~------~~~~~~~~~~v~~~~~s-p~~---~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                          .      ..+..+|...|++++|+ ++|   .+|++++.||.|++|++++++.
T Consensus       308 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~  364 (372)
T 1k8k_C          308 KASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES  364 (372)
T ss_dssp             CC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred             ccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence                0      22324899999999976 666   9999999999999999988664

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.5e-37  Score=276.50  Aligned_cols=254  Identities=12%  Similarity=0.121  Sum_probs=197.9

Q ss_pred             EEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECC--CCCEEE
Q 015490          108 ELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDS--EGTIFA  183 (406)
Q Consensus       108 ~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~--~g~~l~  183 (406)
                      .+.+|.+.|++++|+|+|++|++++ |+.++||++....            ...+..+. |.+.|.+++|++  ++++|+
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~------------~~~~~~l~gH~~~V~~v~~~~~~~~~~l~   75 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG------------QILIADLRGHEGPVWQVAWAHPMYGNILA   75 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE------------EEEEEEEECCSSCEEEEEECCGGGSSCEE
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC------------cEEEEEEcCCCccEEEEEeCCCCCCCEEE
Confidence            4678999999999999999999998 8999999876421            11223333 458899999986  489999


Q ss_pred             EeeCCCeEEEEeCCCcc--eEeeeeccCCceeEEEEccC--CCEEEEEeCCCCEEEEEcCCCeee--eecccCCcceEEE
Q 015490          184 AGSENGNLRVFKWPSLE--IILNESEAHASVKDLSFSPD--GKFLVSLGNRGPGRVWDLASSAVA--TPLAKENDELFAS  257 (406)
Q Consensus       184 ~~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~~--~~~l~s~s~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~  257 (406)
                      +|+.|++|++||+++++  ....+.+|...|.+++|+|+  +.+|++++.|++|++||++.+...  ......+...+.+
T Consensus        76 s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~  155 (316)
T 3bg1_A           76 SCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNA  155 (316)
T ss_dssp             EEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCC
T ss_pred             EEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcce
Confidence            99999999999998874  55566778889999999998  789999999999999999876322  2222334556788


Q ss_pred             EEEEcCCCCceE-----------EEEEEEcCCCcEEEEEeCCCc---eEEEEeeecCCCeEEEEEcCCC----CEEEEEe
Q 015490          258 CRFSPLNNEDYV-----------LYIAAITDRGASIVTWNTTTW---KRIRTKQVVREPVSSFNVSADG----KLLAVGT  319 (406)
Q Consensus       258 ~~~~~~~~~~~~-----------l~~~~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~i~~~~~sp~~----~~l~~~~  319 (406)
                      ++|+|+......           ...+++++.|+.|++||++..   +.+..+..|...|.+++|+|++    ++|++++
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s  235 (316)
T 3bg1_A          156 VSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCS  235 (316)
T ss_dssp             CEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEE
T ss_pred             EEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEc
Confidence            999997410000           014678889999999999754   4677788899999999999986    8999999


Q ss_pred             CCCcEEEEECCCc---e-EEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490          320 ASGDISIIDSSSL---Q-VRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIED  374 (406)
Q Consensus       320 ~dg~i~i~d~~~~---~-~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~  374 (406)
                      .|++|++||+.+.   . ....+ ..|...|.+++|+|++++|++++.|++|++|+...
T Consensus       236 ~D~~v~iw~~~~~~~~~~~~~~~-~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          236 QDGRVFIWTCDDASSNTWSPKLL-HKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             TTCEEEEEECSSTTCCCCBCCEE-EECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred             CCCeEEEEEccCccccchhhhhh-hcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence            9999999998762   1 12233 36889999999999999999999999999999864

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.3e-37  Score=285.68  Aligned_cols=256  Identities=16%  Similarity=0.206  Sum_probs=212.0

Q ss_pred             cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCCE
Q 015490          104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTI  181 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~  181 (406)
                      ....++.+|.+.|++++|+|++++|++++ |+.++||+..  +++.            ...+. |...|.+++|+|+|++
T Consensus        57 ~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~--~~~~------------~~~~~~h~~~v~~~~~s~~g~~  122 (380)
T 3iz6_a           57 VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNAL--TSQK------------THAIKLHCPWVMECAFAPNGQS  122 (380)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETT--TTEE------------EEEEECCCTTCCCCEECTTSSE
T ss_pred             EEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECC--CCcc------------ceEEecCCCCEEEEEECCCCCE
Confidence            46678999999999999999999999998 8888887654  2222            22222 4477999999999999


Q ss_pred             EEEeeCCCeEEEEeCCCcc-------eEeeeeccCCceeEEEEccCC-CEEEEEeCCCCEEEEEcCCCeeeeecc----c
Q 015490          182 FAAGSENGNLRVFKWPSLE-------IILNESEAHASVKDLSFSPDG-KFLVSLGNRGPGRVWDLASSAVATPLA----K  249 (406)
Q Consensus       182 l~~~~~dg~i~vwd~~~~~-------~~~~~~~~~~~i~~~~~s~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~----~  249 (406)
                      |++|+.|+.+++||+.+..       ....+.+|...|.++.|+|++ ..|++++.|++|++||+++++.+..+.    .
T Consensus       123 las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~  202 (380)
T 3iz6_a          123 VACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPS  202 (380)
T ss_dssp             EEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSS
T ss_pred             EEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCC
Confidence            9999999999999986532       234566777899999999974 579999999999999999998876652    3


Q ss_pred             CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC-CceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 015490          250 ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT-TWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIID  328 (406)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d  328 (406)
                      .+...+.++.|++....     ++++++.|+.|++||++ ..+.+..+.+|...|.+++|+|++++|++|+.|++|++||
T Consensus       203 ~h~~~v~~~~~~~~~~~-----~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd  277 (380)
T 3iz6_a          203 GHTADVLSLSINSLNAN-----MFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFD  277 (380)
T ss_dssp             SCCSCEEEEEECSSSCC-----EEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEE
T ss_pred             CCccCeEEEEeecCCCC-----EEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEE
Confidence            45567889999885444     56777889999999998 4577888899999999999999999999999999999999


Q ss_pred             CCCceEEEEeecc------cccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCC
Q 015490          329 SSSLQVRTAVKKA------HLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKS  378 (406)
Q Consensus       329 ~~~~~~~~~~~~~------~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~  378 (406)
                      +++++.+..+...      +...|.+++|+|+|++|++|+.||.|++||+.+++.+
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~  333 (380)
T 3iz6_a          278 MRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMV  333 (380)
T ss_dssp             TTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEE
T ss_pred             CCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceE
Confidence            9999988777421      1234899999999999999999999999999876643

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=5e-35  Score=263.47  Aligned_cols=254  Identities=14%  Similarity=0.204  Sum_probs=213.5

Q ss_pred             eEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEee
Q 015490          107 AELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGS  186 (406)
Q Consensus       107 ~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  186 (406)
                      ....+|.+.|.+++|+|+++++++++++.+++|+++...  ....      ........+...|.+++|+|++++|++++
T Consensus        45 ~~~~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~--~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  116 (337)
T 1gxr_A           45 INTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPG--NKSP------VSQLDCLNRDNYIRSCKLLPDGCTLIVGG  116 (337)
T ss_dssp             EEEECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTT--CCSC------SEEEECSCTTSBEEEEEECTTSSEEEEEE
T ss_pred             ceeccCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCC--ceee------eecccccCCCCcEEEEEEcCCCCEEEEEc
Confidence            344589999999999999999999888888887765422  1111      11111224568899999999999999999


Q ss_pred             CCCeEEEEeCCCcc--eEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCC
Q 015490          187 ENGNLRVFKWPSLE--IILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLN  264 (406)
Q Consensus       187 ~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (406)
                      .||.|++||+++++  ....+..+...|.+++|+|++++|++++.|+.|++||+++++....+..+ ...+.+++|+|++
T Consensus       117 ~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~-~~~i~~~~~~~~~  195 (337)
T 1gxr_A          117 EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH-TDGASCIDISNDG  195 (337)
T ss_dssp             SSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTS
T ss_pred             CCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecc-cCceEEEEECCCC
Confidence            99999999998877  55566677779999999999999999999999999999999988888754 4568899999998


Q ss_pred             CCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeeccccc
Q 015490          265 NEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLG  344 (406)
Q Consensus       265 ~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  344 (406)
                      +.      +++++.++.|++||+++++.+..+. +...+.+++|+|+++++++++.++.|++||+.+++... +. .|..
T Consensus       196 ~~------l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~-~~~~  266 (337)
T 1gxr_A          196 TK------LWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LH-LHES  266 (337)
T ss_dssp             SE------EEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-EC-CCSS
T ss_pred             CE------EEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-Ec-CCcc
Confidence            73      4556789999999999998887765 56789999999999999999999999999999887654 33 6999


Q ss_pred             ceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCC
Q 015490          345 IVTALAFSYDSRALVSASMDSSVRVTVIEDKKKS  378 (406)
Q Consensus       345 ~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~  378 (406)
                      .|.+++|+|++++|++++.||.|++|++++++.+
T Consensus       267 ~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~  300 (337)
T 1gxr_A          267 CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI  300 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             ceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence            9999999999999999999999999999987764

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=3.8e-36  Score=271.62  Aligned_cols=259  Identities=16%  Similarity=0.177  Sum_probs=213.1

Q ss_pred             eeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECC--CCCE
Q 015490          106 VAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDS--EGTI  181 (406)
Q Consensus       106 ~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~--~g~~  181 (406)
                      ...+.+|.+.|++++|+|++++|++++ |+.+++|+++.....          ......+. |...|.+++|+|  ++++
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~d~~~   73 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSN----------WELSDSWRAHDSSIVAIDWASPEYGRI   73 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCC----------EEEEEEEECCSSCEEEEEECCGGGCSE
T ss_pred             cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCc----------ceecceeccCCCcEEEEEEcCCCCCCE
Confidence            345789999999999999999999998 888999887643211          12223333 558899999999  6999


Q ss_pred             EEEeeCCCeEEEEeCCCc---------ceEeeeeccCCceeEEEEccC--CCEEEEEeCCCCEEEEEcCCCeeeeecc--
Q 015490          182 FAAGSENGNLRVFKWPSL---------EIILNESEAHASVKDLSFSPD--GKFLVSLGNRGPGRVWDLASSAVATPLA--  248 (406)
Q Consensus       182 l~~~~~dg~i~vwd~~~~---------~~~~~~~~~~~~i~~~~~s~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~--  248 (406)
                      |++|+.||.|++||++++         +....+..|...|.+++|+|+  +++|++++.|+.|++||+++++....+.  
T Consensus        74 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~  153 (351)
T 3f3f_A           74 IASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLT  153 (351)
T ss_dssp             EEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEE
T ss_pred             EEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccc
Confidence            999999999999999876         456677778889999999999  9999999999999999998876544332  


Q ss_pred             ----------cCCcceEEEEEEEcC---CCCceEEEEEEEcCCCcEEEEEeCCCceE--EEEeeecCCCeEEEEEcCCC-
Q 015490          249 ----------KENDELFASCRFSPL---NNEDYVLYIAAITDRGASIVTWNTTTWKR--IRTKQVVREPVSSFNVSADG-  312 (406)
Q Consensus       249 ----------~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~i~~~~~sp~~-  312 (406)
                                ..+...+.+++|+|+   +.      .+++++.++.+.+|+...++.  +..+..|...|.+++|+|++ 
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~  227 (351)
T 3f3f_A          154 SEMKVLSIPPANHLQSDFCLSWCPSRFSPE------KLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIG  227 (351)
T ss_dssp             EEEESCSCCCSSCSCCCEEEEECCCSSSCC------EEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSS
T ss_pred             ccccccccccCCcccceeEEEeccCCCCCc------EEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCC
Confidence                      134556889999997   44      345566788888888877665  67777888999999999998 


Q ss_pred             ---CEEEEEeCCCcEEEEECCCc----------------------------------------------eEEEEeecccc
Q 015490          313 ---KLLAVGTASGDISIIDSSSL----------------------------------------------QVRTAVKKAHL  343 (406)
Q Consensus       313 ---~~l~~~~~dg~i~i~d~~~~----------------------------------------------~~~~~~~~~~~  343 (406)
                         ++|++++.||.|++||++++                                              +.+..+. +|.
T Consensus       228 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~  306 (351)
T 3f3f_A          228 RWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD-DHN  306 (351)
T ss_dssp             CSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEEC-TTS
T ss_pred             CcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEe-ccc
Confidence               89999999999999999764                                              4555554 799


Q ss_pred             cceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490          344 GIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       344 ~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~  381 (406)
                      ..|++++|+|++++|++++.||.|++|++.+++.+..+
T Consensus       307 ~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          307 GEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             SCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             ccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence            99999999999999999999999999999998765443

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2e-36  Score=275.80  Aligned_cols=240  Identities=15%  Similarity=0.170  Sum_probs=198.1

Q ss_pred             CCCCceEEEEccC----CCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECC-CCCEEEE
Q 015490          112 DSDLPYRMAIHPH----GDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDS-EGTIFAA  184 (406)
Q Consensus       112 h~~~v~~~~~sp~----~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~-~g~~l~~  184 (406)
                      |...|++++|+|+    +.+|++++ ++.+++|++.  +++            .+..+. +...|.+++|+| ++++|++
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~--~~~------------~~~~~~~~~~~i~~~~~~~~~~~~l~s  133 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPI--TMQ------------CIKHYVGHGNAINELKFHPRDPNLLLS  133 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTT--TCC------------EEEEEESCCSCEEEEEECSSCTTEEEE
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEch--hce------------EeeeecCCCCcEEEEEECCCCCCEEEE
Confidence            6788999999999    56788887 7777776543  222            223333 568899999999 8999999


Q ss_pred             eeCCCeEEEEeCCCcceEeee---eccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeeccc------------
Q 015490          185 GSENGNLRVFKWPSLEIILNE---SEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAK------------  249 (406)
Q Consensus       185 ~~~dg~i~vwd~~~~~~~~~~---~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~------------  249 (406)
                      ++.||.|++||+++++....+   ..|...|.+++|+|++++|++++.|+.|++||+++++....+..            
T Consensus       134 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  213 (366)
T 3k26_A          134 VSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRP  213 (366)
T ss_dssp             EETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSC
T ss_pred             EeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCccc
Confidence            999999999999999888777   56777999999999999999999999999999988765443321            


Q ss_pred             ---------------CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCce--------------EEEEeeecC
Q 015490          250 ---------------ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK--------------RIRTKQVVR  300 (406)
Q Consensus       250 ---------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~--------------~~~~~~~~~  300 (406)
                                     .+...+.+++|+  ++      .+++++.++.|++||++++.              .+..+..|.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~------~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (366)
T 3k26_A          214 FISQKIHFPDFSTRDIHRNYVDCVRWL--GD------LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ  285 (366)
T ss_dssp             CCCEEECCCSEEECSSCSSCCCEEEEE--TT------EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS
T ss_pred             ccceeeccCccccccCCcceEEEEEEc--CC------EEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccC
Confidence                           145668899998  33      35667889999999998764              377888888


Q ss_pred             CCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCceE----EEEeeccc--ccceEEEEEcCCCCeEEEEECCCcEEEEEe
Q 015490          301 EPVSSFNVSAD--GKLLAVGTASGDISIIDSSSLQV----RTAVKKAH--LGIVTALAFSYDSRALVSASMDSSVRVTVI  372 (406)
Q Consensus       301 ~~i~~~~~sp~--~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~--~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~  372 (406)
                      ..|.+++|+|+  +++|++|+.||.|++||+.+++.    ...+. .|  ...|.+++|+|++++|++++.||.|++||+
T Consensus       286 ~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  364 (366)
T 3k26_A          286 CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLT-HHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR  364 (366)
T ss_dssp             CCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEEC-CTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             CcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEc-ccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence            89999999999  99999999999999999998753    33553 56  789999999999999999999999999998


Q ss_pred             cC
Q 015490          373 ED  374 (406)
Q Consensus       373 ~~  374 (406)
                      .+
T Consensus       365 ~~  366 (366)
T 3k26_A          365 LR  366 (366)
T ss_dssp             --
T ss_pred             cC
Confidence            63

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-36  Score=281.97  Aligned_cols=253  Identities=15%  Similarity=0.247  Sum_probs=214.1

Q ss_pred             cCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCC-CCEEEEeeC
Q 015490          111 TDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSE-GTIFAAGSE  187 (406)
Q Consensus       111 ~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~-g~~l~~~~~  187 (406)
                      .|...|.+++|+|++.+|++++ ++.+++|+++.....          ......+. |...|.+++|+|+ +++|++++.
T Consensus        65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~----------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~  134 (416)
T 2pm9_A           65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNA----------INSMARFSNHSSSVKTVKFNAKQDNVLASGGN  134 (416)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSC----------CCEEEECCCSSSCCCEEEECSSSTTBEEEECS
T ss_pred             ecCCceEEEEECCCCCeEEEEccCCeEEEeeccccccc----------ccchhhccCCccceEEEEEcCCCCCEEEEEcC
Confidence            5889999999999999999987 889999877642111          11222333 5588999999998 899999999


Q ss_pred             CCeEEEEeCCCcc------eEee---eeccCCceeEEEEccC-CCEEEEEeCCCCEEEEEcCCCeeeeecccCC-----c
Q 015490          188 NGNLRVFKWPSLE------IILN---ESEAHASVKDLSFSPD-GKFLVSLGNRGPGRVWDLASSAVATPLAKEN-----D  252 (406)
Q Consensus       188 dg~i~vwd~~~~~------~~~~---~~~~~~~i~~~~~s~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~-----~  252 (406)
                      ||.|++||+.+++      ....   ...|...|.+++|+|+ +.+|++++.|+.|++||+++++....+..+.     .
T Consensus       135 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  214 (416)
T 2pm9_A          135 NGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIK  214 (416)
T ss_dssp             SSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCC
T ss_pred             CCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccC
Confidence            9999999998876      3322   3456679999999999 7899999999999999999999888887653     5


Q ss_pred             ceEEEEEEEcCCCCceEEEEEEEcCCCc---EEEEEeCCCc-eEEEEee-ecCCCeEEEEEcC-CCCEEEEEeCCCcEEE
Q 015490          253 ELFASCRFSPLNNEDYVLYIAAITDRGA---SIVTWNTTTW-KRIRTKQ-VVREPVSSFNVSA-DGKLLAVGTASGDISI  326 (406)
Q Consensus       253 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~i~~~d~~~~-~~~~~~~-~~~~~i~~~~~sp-~~~~l~~~~~dg~i~i  326 (406)
                      ..+.+++|+|++..     ++++++.++   .|++||++++ +.+..+. .|...|.+++|+| ++++|++++.|+.|++
T Consensus       215 ~~v~~~~~~~~~~~-----~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~  289 (416)
T 2pm9_A          215 QQLSVVEWHPKNST-----RVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLL  289 (416)
T ss_dssp             CCEEEEEECSSCTT-----EEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEE
T ss_pred             CceEEEEECCCCCC-----EEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEE
Confidence            67999999999865     445556677   9999999986 5667777 7889999999999 9999999999999999


Q ss_pred             EECCCceEEEEeecccccceEEEEEcCCC-CeEEEEECCCcEEEEEecCCcCCC
Q 015490          327 IDSSSLQVRTAVKKAHLGIVTALAFSYDS-RALVSASMDSSVRVTVIEDKKKSG  379 (406)
Q Consensus       327 ~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~s~dg~i~iw~~~~~~~~~  379 (406)
                      ||+++++.+..+. .|...|.+++|+|++ .+|++++.|+.|++|++.+.+...
T Consensus       290 wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~  342 (416)
T 2pm9_A          290 WNPESAEQLSQFP-ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTL  342 (416)
T ss_dssp             ECSSSCCEEEEEE-CSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSS
T ss_pred             eeCCCCccceeec-CCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCc
Confidence            9999999999886 899999999999998 899999999999999999877543

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.6e-35  Score=285.27  Aligned_cols=269  Identities=18%  Similarity=0.299  Sum_probs=222.5

Q ss_pred             CCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEeccc
Q 015490           67 RRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVE  145 (406)
Q Consensus        67 ~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~  145 (406)
                      ++++.+++++..+          .+..|+.+.     +.+..+.+|...|.+++|+|+++.+++++ ++.+++|+.+.. 
T Consensus       272 ~d~~~l~~~~~d~----------~i~~w~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-  335 (577)
T 2ymu_A          272 PDGQTIASASDDK----------TVKLWNRNG-----QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-  335 (577)
T ss_dssp             TTSSEEEEEETTS----------CEEEEETTS-----CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-
T ss_pred             CCCCEEEEEeCCC----------EEEEEeCCC-----cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-
Confidence            3556666654332          244455433     46778899999999999999999999987 888999874321 


Q ss_pred             ccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEE
Q 015490          146 NTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLV  225 (406)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  225 (406)
                        ..           .....+...+.+++|+|++++|++++.|+.|++||. +++.+..+..|...|.+++|+|++++|+
T Consensus       336 --~~-----------~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~  401 (577)
T 2ymu_A          336 --HL-----------QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIA  401 (577)
T ss_dssp             --EE-----------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEE
T ss_pred             --ee-----------EEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEE
Confidence              11           111234578999999999999999999999999995 5677778888888999999999999999


Q ss_pred             EEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEE
Q 015490          226 SLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSS  305 (406)
Q Consensus       226 s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~  305 (406)
                      +++.|+.|++||. +++....+..+ ...+.+++|+|+++.      +++++.|+.|++||.. ++.+..+..|...|.+
T Consensus       402 ~~~~d~~v~~~~~-~~~~~~~~~~~-~~~v~~~~~s~d~~~------l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~  472 (577)
T 2ymu_A          402 SASDDKTVKLWNR-NGQLLQTLTGH-SSSVWGVAFSPDDQT------IASASDDKTVKLWNRN-GQLLQTLTGHSSSVRG  472 (577)
T ss_dssp             EEETTSEEEEECT-TCCEEEEEECC-SSCEEEEEECTTSSE------EEEEETTSEEEEEETT-SCEEEEEECCSSCEEE
T ss_pred             EEeCCCEEEEEeC-CCCEEEEecCC-CCCeEEEEECCCCCE------EEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEE
Confidence            9999999999996 56666666654 556889999999983      5566789999999964 5778888999999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490          306 FNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       306 ~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      ++|+|++++|++++.|+.|++||. +++.+..+. +|...|++++|+|+|++|++++.|+.|++||. +++.
T Consensus       473 ~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~-~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~  541 (577)
T 2ymu_A          473 VAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQL  541 (577)
T ss_dssp             EEECTTSCEEEEEETTSEEEEEET-TSCEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCE
T ss_pred             EEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEe-CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCE
Confidence            999999999999999999999995 577888886 89999999999999999999999999999995 4444

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=7.3e-35  Score=271.08  Aligned_cols=266  Identities=18%  Similarity=0.233  Sum_probs=217.1

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-cc
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NV  167 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  167 (406)
                      .++.|+..+...  ..+..+.+|...|++++|+|+|++|++|+ |+.++||++..  +            +.+..+. |.
T Consensus       126 tV~lWd~~tg~~--~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~--~------------~~~~~~~~h~  189 (420)
T 4gga_A          126 SVYLWSASSGDI--LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ--Q------------KRLRNMTSHS  189 (420)
T ss_dssp             EEEEEETTTCCE--EEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT--T------------EEEEEECCCS
T ss_pred             EEEEEECCCCCE--EEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCC--C------------cEEEEEeCCC
Confidence            567777765432  23345567889999999999999999998 89999977642  2            2333333 34


Q ss_pred             CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-eEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeee-
Q 015490          168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLE-IILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT-  245 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~-  245 (406)
                      ..+.++++  ++.+|++|+.|+.+++||..... .+..+..|...+..+.|+|+++++++++.|+.+++|+..+++... 
T Consensus       190 ~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~  267 (420)
T 4gga_A          190 ARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV  267 (420)
T ss_dssp             SCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSC
T ss_pred             CceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccce
Confidence            67887777  56799999999999999987654 455667788899999999999999999999999999998765422 


Q ss_pred             --ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEe--CC
Q 015490          246 --PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGT--AS  321 (406)
Q Consensus       246 --~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~--~d  321 (406)
                        .....+...+.+++|+|.+..   ++.+++++.|+.|++||+.+++....+..+ ..+.++.|+|+++.+++++  .|
T Consensus       268 ~~~~~~~~~~~V~~~~~~p~~~~---~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d  343 (420)
T 4gga_A          268 PLQTFTQHQGAVKAVAWCPWQSN---VLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQ  343 (420)
T ss_dssp             CSEEECCCSSCEEEEEECTTCTT---EEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTT
T ss_pred             eeeeecccCCceeeeeeCCCccc---EEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCC
Confidence              112234567899999999886   445566788999999999999998888766 5789999999999988765  68


Q ss_pred             CcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCC
Q 015490          322 GDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKS  378 (406)
Q Consensus       322 g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~  378 (406)
                      +.|+|||+.+++.+..+. +|.+.|++++|+|||++|+||+.|++|+|||+.+....
T Consensus       344 ~~I~iwd~~~~~~v~~l~-gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~  399 (420)
T 4gga_A          344 NQLVIWKYPTMAKVAELK-GHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPA  399 (420)
T ss_dssp             CCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC
T ss_pred             CEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCcc
Confidence            999999999999999996 99999999999999999999999999999999765543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-34  Score=258.15  Aligned_cols=274  Identities=12%  Similarity=0.101  Sum_probs=224.7

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVEN  146 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~  146 (406)
                      +++.+++++..|          .+..|+...    ......+..|...|.+++|+|+++++++++ ++.+++|++.....
T Consensus        28 ~~~~l~s~~~dg----------~v~vw~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~   93 (313)
T 3odt_A           28 DDSKVASVSRDG----------TVRLWSKDD----QWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG   93 (313)
T ss_dssp             ETTEEEEEETTS----------EEEEEEESS----SEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT
T ss_pred             CCCEEEEEEcCC----------cEEEEECCC----CEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC
Confidence            666767664433          344555443    246677889999999999999999999988 88888887654221


Q ss_pred             cceeecceeccceeeecc-cccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEcc-CCCEE
Q 015490          147 TEIRRLGVKISEKVLSQL-ENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSP-DGKFL  224 (406)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l  224 (406)
                                 .+....+ .+...|.+++|  +++++++++.||.|++||  .++....+..|...+.+++|+| +++++
T Consensus        94 -----------~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l  158 (313)
T 3odt_A           94 -----------EDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKF  158 (313)
T ss_dssp             -----------SCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEE
T ss_pred             -----------CCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEE
Confidence                       1122222 34578999999  678999999999999999  6677777888888999999998 89999


Q ss_pred             EEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeE
Q 015490          225 VSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVS  304 (406)
Q Consensus       225 ~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~  304 (406)
                      ++++.|+.|++||  .++....+...+...+.+++|+|++.       +++++.++.|++||+++++.+..+..|...|.
T Consensus       159 ~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-------~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~  229 (313)
T 3odt_A          159 LTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-------FISCSNDGLIKLVDMHTGDVLRTYEGHESFVY  229 (313)
T ss_dssp             EEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-------EEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             EEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-------EEEccCCCeEEEEECCchhhhhhhhcCCceEE
Confidence            9999999999999  45666667665677899999999985       34567899999999999999999999999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCch
Q 015490          305 SFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLN  382 (406)
Q Consensus       305 ~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~  382 (406)
                      +++|+|++ .|++++.||.|++||+.+++....+. .|...|.+++|+|+++ +++++.||.|++|++++++......
T Consensus       230 ~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~  304 (313)
T 3odt_A          230 CIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVIT-LPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDE  304 (313)
T ss_dssp             EEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEE-CSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC---
T ss_pred             EEEEecCC-CEEEEecCCEEEEEECCCCceeEEEe-ccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhh
Confidence            99999999 58899999999999999999998886 7889999999999998 6679999999999999987765543

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.6e-35  Score=270.00  Aligned_cols=238  Identities=15%  Similarity=0.226  Sum_probs=203.3

Q ss_pred             CCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCCEEEEeeCCC
Q 015490          112 DSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIFAAGSENG  189 (406)
Q Consensus       112 h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg  189 (406)
                      |.+.|++++|+|++++|++++ ++.+++|+   .++.            ....+. +...|.+++|+|++++|++++.|+
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~---~~~~------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  171 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN---KTGA------------LLNVLNFHRAPIVSVKWNKDGTHIISMDVEN  171 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEE---TTSC------------EEEEECCCCSCEEEEEECTTSSEEEEEETTC
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEe---CCCC------------eeeeccCCCccEEEEEECCCCCEEEEEecCC
Confidence            788999999999999999987 88888886   2222            222233 557899999999999999999999


Q ss_pred             eEEEEeCCCcceEee--------------------------------------------------------eeccCCcee
Q 015490          190 NLRVFKWPSLEIILN--------------------------------------------------------ESEAHASVK  213 (406)
Q Consensus       190 ~i~vwd~~~~~~~~~--------------------------------------------------------~~~~~~~i~  213 (406)
                      .|++||+.+++....                                                        +..|...|.
T Consensus       172 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~  251 (425)
T 1r5m_A          172 VTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPIS  251 (425)
T ss_dssp             CEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEE
T ss_pred             eEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceE
Confidence            999999977654332                                                        224455899


Q ss_pred             EEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEE
Q 015490          214 DLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRI  293 (406)
Q Consensus       214 ~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~  293 (406)
                      +++|+|++++|++++.|+.|++||+++++....+..+ ...+.+++|+|++ .      +++++.++.|++||+++++.+
T Consensus       252 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~-~------l~~~~~d~~i~i~d~~~~~~~  323 (425)
T 1r5m_A          252 VLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGH-SQSIVSASWVGDD-K------VISCSMDGSVRLWSLKQNTLL  323 (425)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCC-SSCEEEEEEETTT-E------EEEEETTSEEEEEETTTTEEE
T ss_pred             EEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCC-CccEEEEEECCCC-E------EEEEeCCCcEEEEECCCCcEe
Confidence            9999999999999999999999999998888877654 5568899999988 3      345567999999999999999


Q ss_pred             EEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCce--------------------EEEEeeccccc--ceEEEEE
Q 015490          294 RTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQ--------------------VRTAVKKAHLG--IVTALAF  351 (406)
Q Consensus       294 ~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~--------------------~~~~~~~~~~~--~v~~~~~  351 (406)
                      ..+..|...+.+++|+|++++|++++.||.|++||+.+++                    .+..+. .|..  .|.+++|
T Consensus       324 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~  402 (425)
T 1r5m_A          324 ALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQ-SSQDNDYIFDLSW  402 (425)
T ss_dssp             EEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEEC-CTTCCCCEEEEEE
T ss_pred             EecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhc-CcccCCceEEEEc
Confidence            9999999999999999999999999999999999999887                    777775 7766  9999999


Q ss_pred             cCCCCeEEEEECCCcEEEEEec
Q 015490          352 SYDSRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       352 sp~~~~l~s~s~dg~i~iw~~~  373 (406)
                      +|++++|++++.||.|++|+++
T Consensus       403 s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          403 NCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             CTTSSEEEEEESSSCCEEEECC
T ss_pred             cCCCceEEEEecCceEEEEeec
Confidence            9999999999999999999985

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-36  Score=286.02  Aligned_cols=276  Identities=11%  Similarity=0.088  Sum_probs=206.6

Q ss_pred             ccEEEEEEecCCCCccccceeEEecCCCCceEEEEccC------CCeEEEEe-cCCeEEEEEecccccceeecceeccce
Q 015490           87 NAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPH------GDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEK  159 (406)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~------~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~  159 (406)
                      +.+.++.++...  ........+.+|.+.|.+++|+|+      +.+|++++ |++++||++............   ...
T Consensus       183 ~tI~iWd~~~~~--~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~---~~~  257 (524)
T 2j04_B          183 SCIQIFKMNTST--LHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM---CEK  257 (524)
T ss_dssp             EEEEEEEEETTT--CCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC---CCS
T ss_pred             ceEEEEEccCCC--CCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee---ecC
Confidence            455666655432  212223457788999999999997      46888887 999999887643211000000   011


Q ss_pred             eeeccc-ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcce-EeeeeccCCceeEE--EEccCC-CEEEEEeCCCCEE
Q 015490          160 VLSQLE-NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEI-ILNESEAHASVKDL--SFSPDG-KFLVSLGNRGPGR  234 (406)
Q Consensus       160 ~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~--~~s~~~-~~l~s~s~d~~i~  234 (406)
                      ....+. |...|.+++|++++ .|++|+.||+|++||++++.. ...+..|...|+++  +|+|++ ++|++++.|++|+
T Consensus       258 p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvk  336 (524)
T 2j04_B          258 PSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFY  336 (524)
T ss_dssp             CSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEE
T ss_pred             ceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEE
Confidence            112233 44789999999864 899999999999999987643 34567788899999  578887 8999999999999


Q ss_pred             EEEcCCCeeeeecccCCc-ceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCC
Q 015490          235 VWDLASSAVATPLAKEND-ELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGK  313 (406)
Q Consensus       235 iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~  313 (406)
                      |||++++++...+..+.. ..+.+++|+|++..      +++++.++.|++||++++.++..+.+|...|.+++|+|+|+
T Consensus       337 lWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~------l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~  410 (524)
T 2j04_B          337 IFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYS------YIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHP  410 (524)
T ss_dssp             EECGGGHHHHCEEEEECSCCSCCCEEEETTTTE------EEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCC
T ss_pred             EEECCCCCcccccccccccCcccceEeCCCcCe------EEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCC
Confidence            999998877665554432 23678999999873      45667889999999999988888889999999999999999


Q ss_pred             EEEEEeCCCcEEEEECCCc--------------------------------------------eEEEEeecccccceEEE
Q 015490          314 LLAVGTASGDISIIDSSSL--------------------------------------------QVRTAVKKAHLGIVTAL  349 (406)
Q Consensus       314 ~l~~~~~dg~i~i~d~~~~--------------------------------------------~~~~~~~~~~~~~v~~~  349 (406)
                      +|++|+.|++|++||+...                                            ..+..+ .+|...|.++
T Consensus       411 ~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l-~gh~~~V~~V  489 (524)
T 2j04_B          411 MVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKI-DAHGINITCT  489 (524)
T ss_dssp             BCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC--------------CCCSCCCE
T ss_pred             eEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeee-cCCCceEEEE
Confidence            9999999999999985321                                            001112 2578889999


Q ss_pred             EEcCCCC---eEEEEECCCcEEEEEecCC
Q 015490          350 AFSYDSR---ALVSASMDSSVRVTVIEDK  375 (406)
Q Consensus       350 ~~sp~~~---~l~s~s~dg~i~iw~~~~~  375 (406)
                      +|+|++.   .+++|+.||.|+||+++-.
T Consensus       490 afsp~~~~~~~lAsg~~~g~vrlw~l~~~  518 (524)
T 2j04_B          490 KWNETSAGGKCYAFSNSAGLLTLEYLSLE  518 (524)
T ss_dssp             EECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred             ECCCCCCccHHHHhhccCceEEEEEcccc
Confidence            9999954   8999999999999998653

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.2e-35  Score=269.76  Aligned_cols=247  Identities=12%  Similarity=0.136  Sum_probs=196.9

Q ss_pred             EecCCCCceEEEEccC---CCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEE------ECC
Q 015490          109 LRTDSDLPYRMAIHPH---GDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALT------FDS  177 (406)
Q Consensus       109 ~~~h~~~v~~~~~sp~---~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~------~s~  177 (406)
                      ..+|...|.+++|+|+   +.++++++ ++.+++|++...  +           .....+. |...|.++.      |+|
T Consensus        61 ~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~-----------~~~~~~~~~~~~v~~~~~~~~~~~s~  127 (357)
T 3i2n_A           61 EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAP--E-----------MPVYSVKGHKEIINAIDGIGGLGIGE  127 (357)
T ss_dssp             EEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSC--S-----------SCSEEECCCSSCEEEEEEESGGGCC-
T ss_pred             eecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCC--C-----------ccEEEEEecccceEEEeeccccccCC
Confidence            3479999999999999   68888887 888888766532  1           1222233 457899994      578


Q ss_pred             CCCEEEEeeCCCeEEEEeCCCcc-eEeeeeccCC----ceeEEE----EccCCCEEEEEeCCCCEEEEEcCCCeeeeecc
Q 015490          178 EGTIFAAGSENGNLRVFKWPSLE-IILNESEAHA----SVKDLS----FSPDGKFLVSLGNRGPGRVWDLASSAVATPLA  248 (406)
Q Consensus       178 ~g~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~----~i~~~~----~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  248 (406)
                      ++++|++++.||.|++||+++++ ....+..+..    .+.+++    |+|++++|++++.|+.|++||+++++..... 
T Consensus       128 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-  206 (357)
T 3i2n_A          128 GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET-  206 (357)
T ss_dssp             CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE-
T ss_pred             CccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeec-
Confidence            99999999999999999999876 5555544433    788888    7899999999999999999999998875543 


Q ss_pred             cCCcceEEEEEEEc---CCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEe-----eecCCCeEEEEEcCCCC-EEEEEe
Q 015490          249 KENDELFASCRFSP---LNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTK-----QVVREPVSSFNVSADGK-LLAVGT  319 (406)
Q Consensus       249 ~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~-----~~~~~~i~~~~~sp~~~-~l~~~~  319 (406)
                       .+...+.+++|+|   ++.      .+++++.++.|++||+++++....+     ..|...|.+++|+|+++ +|++++
T Consensus       207 -~~~~~v~~~~~~~~~~~~~------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  279 (357)
T 3i2n_A          207 -NIKNGVCSLEFDRKDISMN------KLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAG  279 (357)
T ss_dssp             -ECSSCEEEEEESCSSSSCC------EEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred             -CCCCceEEEEcCCCCCCCC------EEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEe
Confidence             3455789999999   666      3455678999999999887654443     37889999999999998 899999


Q ss_pred             CCCcEEEEECCCc-------------------eEEEEeecccccceEEEEEcCCCCeEE-EEECCCcEEEEEecCCcC
Q 015490          320 ASGDISIIDSSSL-------------------QVRTAVKKAHLGIVTALAFSYDSRALV-SASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       320 ~dg~i~i~d~~~~-------------------~~~~~~~~~~~~~v~~~~~sp~~~~l~-s~s~dg~i~iw~~~~~~~  377 (406)
                      .||.|++||++++                   +.+..+. +|...|.+++|+|++++|+ +++.|+.|++||+.+.+.
T Consensus       280 ~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          280 GAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVT-LSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             TTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEE-CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred             CCCcEEEeecCCCcccccccCCCCccccccccceeeccc-cCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence            9999999998753                   3455564 7999999999999999998 899999999999988764

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-35  Score=271.08  Aligned_cols=253  Identities=16%  Similarity=0.188  Sum_probs=207.5

Q ss_pred             ceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCC--CC
Q 015490          105 PVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSE--GT  180 (406)
Q Consensus       105 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~--g~  180 (406)
                      .+..+.+|.+.|++++|+|++++|++++ ++.++||+++..+.            .....+. |...|.+++|+++  ++
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~------------~~~~~~~~h~~~v~~~~~~~~~~~~   70 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH------------KLIDTLTGHEGPVWRVDWAHPKFGT   70 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE------------EEEEEECCCSSCEEEEEECCGGGCS
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc------------eeeeEecCCCCcEEEEEeCCCCCCC
Confidence            5667899999999999999999999997 89999998874322            2223333 4588999999987  89


Q ss_pred             EEEEeeCCCeEEEEeCCCcc--eEeeeeccCCceeEEEEccC--CCEEEEEeCCCCEEEEEcCCCeeeee-cccCCcceE
Q 015490          181 IFAAGSENGNLRVFKWPSLE--IILNESEAHASVKDLSFSPD--GKFLVSLGNRGPGRVWDLASSAVATP-LAKENDELF  255 (406)
Q Consensus       181 ~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~~--~~~l~s~s~d~~i~iwd~~~~~~~~~-~~~~~~~~~  255 (406)
                      +|++++.||.|++||+.+++  ....+..|...|.+++|+|+  +++|++++.|+.|++||++++..... ....+...+
T Consensus        71 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v  150 (379)
T 3jrp_A           71 ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV  150 (379)
T ss_dssp             EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCE
T ss_pred             EEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCce
Confidence            99999999999999999887  66667777889999999999  99999999999999999988743322 122345678


Q ss_pred             EEEEEEcC-------------CCCceEEEEEEEcCCCcEEEEEeCCCce----EEEEeeecCCCeEEEEEcCC---CCEE
Q 015490          256 ASCRFSPL-------------NNEDYVLYIAAITDRGASIVTWNTTTWK----RIRTKQVVREPVSSFNVSAD---GKLL  315 (406)
Q Consensus       256 ~~~~~~~~-------------~~~~~~l~~~~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~i~~~~~sp~---~~~l  315 (406)
                      .+++|+|.             +.      .+++++.|+.|++||++++.    ....+..|...|.+++|+|+   +++|
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l  224 (379)
T 3jrp_A          151 NSASWAPATIEEDGEHNGTKESR------KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYL  224 (379)
T ss_dssp             EEEEECCCC----------CTTC------EEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEE
T ss_pred             EEEEEcCccccccccccCCCCCC------EEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeE
Confidence            99999994             55      35666789999999997653    45667788899999999999   8999


Q ss_pred             EEEeCCCcEEEEECCCce---EEEEe-ecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCC
Q 015490          316 AVGTASGDISIIDSSSLQ---VRTAV-KKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDK  375 (406)
Q Consensus       316 ~~~~~dg~i~i~d~~~~~---~~~~~-~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~  375 (406)
                      ++++.||.|++||+.++.   ....+ ...|...|.+++|+|++++|++++.||.|++|++..+
T Consensus       225 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          225 ASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             EEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred             EEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence            999999999999998863   11111 1248889999999999999999999999999999854

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=9.8e-35  Score=268.58  Aligned_cols=263  Identities=20%  Similarity=0.224  Sum_probs=212.8

Q ss_pred             EEEEEecCCCCccccceeEEec-CCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecc-cc
Q 015490           90 LLSHFDFASNSLSDQPVAELRT-DSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQL-EN  166 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  166 (406)
                      .+..|+.....    ....+.. |...|.+++|+|++++|++++ ++.+++|++..  ++            .+..+ .+
T Consensus       114 ~v~lw~~~~~~----~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~--~~------------~~~~~~~~  175 (401)
T 4aez_A          114 NVYVWNADSGS----VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES--QT------------KLRTMAGH  175 (401)
T ss_dssp             EEEEEETTTCC----EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT--CC------------EEEEECCC
T ss_pred             eEEEeeCCCCc----EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcC--Ce------------EEEEecCC
Confidence            45666665532    3344443 899999999999999999987 88888876542  22            22223 35


Q ss_pred             cCcEEEEEECCCCCEEEEeeCCCeEEEEeCC-CcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeee
Q 015490          167 VGQQLALTFDSEGTIFAAGSENGNLRVFKWP-SLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT  245 (406)
Q Consensus       167 ~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~  245 (406)
                      ...|.+++|  ++++|++|+.||.|++||++ .......+..|...|.+++|+|++++|++++.|+.|++||+++++...
T Consensus       176 ~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~  253 (401)
T 4aez_A          176 QARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKF  253 (401)
T ss_dssp             SSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEE
T ss_pred             CCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccE
Confidence            588999999  56799999999999999998 456677777888899999999999999999999999999999998888


Q ss_pred             ecccCCcceEEEEEEEcCCCCceEEEEEEE--cCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEE--eCC
Q 015490          246 PLAKENDELFASCRFSPLNNEDYVLYIAAI--TDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVG--TAS  321 (406)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~--~~d  321 (406)
                      .+..+ ...+.+++|+|++..     ++++  ++.|+.|++||+++++.+..+. +...+.+++|+|++++++++  +.|
T Consensus       254 ~~~~~-~~~v~~~~~~p~~~~-----ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d  326 (401)
T 4aez_A          254 TKTNH-NAAVKAVAWCPWQSN-----LLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPD  326 (401)
T ss_dssp             EECCC-SSCCCEEEECTTSTT-----EEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTT
T ss_pred             EecCC-cceEEEEEECCCCCC-----EEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCC
Confidence            77654 556889999999886     3344  4489999999999999988886 45789999999999999995  489


Q ss_pred             CcEEEEECCCceEEEE--eecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCC
Q 015490          322 GDISIIDSSSLQVRTA--VKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGG  380 (406)
Q Consensus       322 g~i~i~d~~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~  380 (406)
                      |.|++||+.+++....  +. +|...|.+++|+|++++|++++.||.|++|++.+++.+..
T Consensus       327 g~i~v~~~~~~~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~  386 (401)
T 4aez_A          327 NNLSIWSYSSSGLTKQVDIP-AHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKR  386 (401)
T ss_dssp             CEEEEEEEETTEEEEEEEEE-CCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC------
T ss_pred             CcEEEEecCCccceeEEEec-CCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccc
Confidence            9999999998655444  43 7999999999999999999999999999999999887544

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=7.8e-35  Score=287.92  Aligned_cols=248  Identities=17%  Similarity=0.234  Sum_probs=203.0

Q ss_pred             cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecc-cccCcEEEEEECCCCCE
Q 015490          104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQL-ENVGQQLALTFDSEGTI  181 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~  181 (406)
                      .....+.+|...|.+++|+|++++|++++ |+.++||++..  +.            ....+ .|...|.+++|+|++++
T Consensus       421 ~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~--~~------------~~~~~~~h~~~v~~~~~s~~~~~  486 (694)
T 3dm0_A          421 VAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAA--GV------------STRRFVGHTKDVLSVAFSLDNRQ  486 (694)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--TE------------EEEEEECCSSCEEEEEECTTSSC
T ss_pred             cccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC--Cc------------ceeEEeCCCCCEEEEEEeCCCCE
Confidence            45678899999999999999999999998 88888877542  22            22233 35588999999999999


Q ss_pred             EEEeeCCCeEEEEeCCCcceEeee---eccCCceeEEEEccCC--CEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEE
Q 015490          182 FAAGSENGNLRVFKWPSLEIILNE---SEAHASVKDLSFSPDG--KFLVSLGNRGPGRVWDLASSAVATPLAKENDELFA  256 (406)
Q Consensus       182 l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~i~~~~~s~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~  256 (406)
                      |++|+.|++|++||..........   .+|...|.+++|+|++  ..|++++.|++|++||+++++....+..| ...+.
T Consensus       487 l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h-~~~v~  565 (694)
T 3dm0_A          487 IVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGH-TGYVS  565 (694)
T ss_dssp             EEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEE
T ss_pred             EEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCC-CCCEE
Confidence            999999999999998654333222   3456689999999987  58999999999999999999888887755 55689


Q ss_pred             EEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEE
Q 015490          257 SCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRT  336 (406)
Q Consensus       257 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~  336 (406)
                      +++|+|+++      .+++++.|+.|++||+++++.+..+..+ ..+.+++|+|++.++++++ ++.|++||+++++.+.
T Consensus       566 ~v~~spdg~------~l~sg~~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~  637 (694)
T 3dm0_A          566 TVAVSPDGS------LCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVE  637 (694)
T ss_dssp             EEEECTTSS------EEEEEETTSBCEEEETTTTEEEECCBCS-SCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             EEEEeCCCC------EEEEEeCCCeEEEEECCCCceEEEecCC-CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChh
Confidence            999999998      4667788999999999999988877654 6799999999999888776 5669999999998877


Q ss_pred             Eeecc------------------cccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490          337 AVKKA------------------HLGIVTALAFSYDSRALVSASMDSSVRVTVIED  374 (406)
Q Consensus       337 ~~~~~------------------~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~  374 (406)
                      .+...                  +...+++++|+|+|++|++|+.||+|++|++..
T Consensus       638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          638 DLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR  693 (694)
T ss_dssp             EECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             hhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence            66411                  112378999999999999999999999999863

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-36  Score=281.28  Aligned_cols=288  Identities=9%  Similarity=0.139  Sum_probs=221.6

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccC-CCeEEEEe-cCCeEEEEEeccc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPH-GDGIICAL-QNSCRLFEWDEVE  145 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-~~~l~~~~-~~~~~i~~~~~~~  145 (406)
                      +++++++++..|        .  +..|+..........+..+.+|...|.+++|+|+ +.+|++++ ++.+++|++....
T Consensus        78 ~~~~l~~~~~dg--------~--v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  147 (416)
T 2pm9_A           78 NNKIIAGALDNG--------S--LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCT  147 (416)
T ss_dssp             SSSCEEEEESSS--------C--EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTS
T ss_pred             CCCeEEEEccCC--------e--EEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCc
Confidence            566666654332        2  4445544322222477888999999999999998 78888887 8888887655332


Q ss_pred             ccceeecceeccceeeecccccCcEEEEEECCC-CCEEEEeeCCCeEEEEeCCCcceEeeeecc------CCceeEEEEc
Q 015490          146 NTEIRRLGVKISEKVLSQLENVGQQLALTFDSE-GTIFAAGSENGNLRVFKWPSLEIILNESEA------HASVKDLSFS  218 (406)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------~~~i~~~~~s  218 (406)
                      .......    .........+...|.+++|+|+ +.+|++++.||.|++||+++++.+..+..+      ...|.+++|+
T Consensus       148 ~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  223 (416)
T 2pm9_A          148 ESPSNYT----PLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH  223 (416)
T ss_dssp             SCTTTCC----CBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEEC
T ss_pred             ccccccc----ccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEEC
Confidence            1000000    0000111235578999999999 789999999999999999999888777766      5689999999


Q ss_pred             cCC-CEEEEEeCCC---CEEEEEcCCC-eeeeecccCCcceEEEEEEEc-CCCCceEEEEEEEcCCCcEEEEEeCCCceE
Q 015490          219 PDG-KFLVSLGNRG---PGRVWDLASS-AVATPLAKENDELFASCRFSP-LNNEDYVLYIAAITDRGASIVTWNTTTWKR  292 (406)
Q Consensus       219 ~~~-~~l~s~s~d~---~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~  292 (406)
                      |++ .++++++.|+   .|++||++++ .....+...+...+.+++|+| ++.      ++++++.|+.|++||+++++.
T Consensus       224 ~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~------~l~s~~~dg~v~~wd~~~~~~  297 (416)
T 2pm9_A          224 PKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEH------LLLSSGRDNTVLLWNPESAEQ  297 (416)
T ss_dssp             SSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSS------CEEEEESSSEEEEECSSSCCE
T ss_pred             CCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCC------eEEEEeCCCCEEEeeCCCCcc
Confidence            997 6899999998   9999999986 455555524566799999999 665      356667899999999999999


Q ss_pred             EEEeeecCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCceEEEEee--------------------------------
Q 015490          293 IRTKQVVREPVSSFNVSADG-KLLAVGTASGDISIIDSSSLQVRTAVK--------------------------------  339 (406)
Q Consensus       293 ~~~~~~~~~~i~~~~~sp~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~--------------------------------  339 (406)
                      +..+..|...|.+++|+|++ ++|++++.|+.|++||+.+........                                
T Consensus       298 ~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (416)
T 2pm9_A          298 LSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQ  377 (416)
T ss_dssp             EEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCC
T ss_pred             ceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccccccccccccccc
Confidence            99999999999999999999 899999999999999998765322210                                


Q ss_pred             --cccccceEEEEEcCCCCeEEEEECCCcEEEEEecCC
Q 015490          340 --KAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDK  375 (406)
Q Consensus       340 --~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~  375 (406)
                        ..|..++.+++|+|+|++|++++.|+.|+||++.+.
T Consensus       378 ~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          378 APTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             CCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred             CCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence              015677889999999999999999999999999875

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.7e-35  Score=291.25  Aligned_cols=260  Identities=20%  Similarity=0.228  Sum_probs=216.4

Q ss_pred             ceeEEecCCCCceEEEEccCC-CeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCCE
Q 015490          105 PVAELRTDSDLPYRMAIHPHG-DGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTI  181 (406)
Q Consensus       105 ~~~~~~~h~~~v~~~~~sp~~-~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~  181 (406)
                      ....+++|.+.|++++|+|++ ++|++++ |+.+++|++......         .......+. |...|.+++|+|++++
T Consensus       374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~---------~~~~~~~~~~h~~~v~~v~~s~~g~~  444 (694)
T 3dm0_A          374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA---------YGVAQRRLTGHSHFVEDVVLSSDGQF  444 (694)
T ss_dssp             EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC---------SCEEEEEEECCSSCEEEEEECTTSSE
T ss_pred             hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc---------cccccceecCCCCcEEEEEECCCCCE
Confidence            345689999999999999976 5777777 899999887643211         111222333 4588999999999999


Q ss_pred             EEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecc--cCCcceEEEEE
Q 015490          182 FAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLA--KENDELFASCR  259 (406)
Q Consensus       182 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~  259 (406)
                      |++|+.||+|++||+.+++....+.+|...|.+++|+|++++|++++.|++|++||...........  ..+...+.+++
T Consensus       445 l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~  524 (694)
T 3dm0_A          445 ALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVR  524 (694)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEE
T ss_pred             EEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEE
Confidence            9999999999999999999999999999999999999999999999999999999986654433222  24556799999


Q ss_pred             EEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEee
Q 015490          260 FSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVK  339 (406)
Q Consensus       260 ~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  339 (406)
                      |+|++..    ..+++++.|+.|++||+++.+....+..|...|.+++|+|++++|++|+.||.|++||+.+++.+..+.
T Consensus       525 ~~~~~~~----~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~  600 (694)
T 3dm0_A          525 FSPNTLQ----PTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE  600 (694)
T ss_dssp             ECSCSSS----CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB
T ss_pred             EeCCCCc----ceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec
Confidence            9998742    145677889999999999999999999999999999999999999999999999999999999888774


Q ss_pred             cccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCC
Q 015490          340 KAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGG  380 (406)
Q Consensus       340 ~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~  380 (406)
                        +...|.+++|+|++.+|++++ |+.|++||+++++.+..
T Consensus       601 --~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~  638 (694)
T 3dm0_A          601 --ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVED  638 (694)
T ss_dssp             --CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred             --CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhh
Confidence              567899999999998777665 56799999998876543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=5.1e-35  Score=268.75  Aligned_cols=270  Identities=15%  Similarity=0.207  Sum_probs=206.0

Q ss_pred             cEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEcc-CCCeEEEEe-cCCeEEEEEeccccc
Q 015490           70 YYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHP-HGDGIICAL-QNSCRLFEWDEVENT  147 (406)
Q Consensus        70 ~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~~~~-~~~~~i~~~~~~~~~  147 (406)
                      +++++++..|          .+..|+......  .......+|...|.+++|+| ++.+|++++ ++.+++|++..   .
T Consensus        87 ~~l~s~~~dg----------~i~iwd~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---~  151 (383)
T 3ei3_B           87 TTVAVGSKGG----------DIILWDYDVQNK--TSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG---S  151 (383)
T ss_dssp             TEEEEEEBTS----------CEEEEETTSTTC--EEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS---C
T ss_pred             CEEEEEcCCC----------eEEEEeCCCccc--ceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC---C
Confidence            5666664433          344555544221  12223347999999999999 678888887 88888877652   1


Q ss_pred             ceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCC-EEEE
Q 015490          148 EIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGK-FLVS  226 (406)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s  226 (406)
                      ....+        .....+...|.+++|+|++++|++|+.|+.|++||+ +++.+..+..|...|.+++|+|+++ +|++
T Consensus       152 ~~~~~--------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s  222 (383)
T 3ei3_B          152 VIQVF--------AKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMAT  222 (383)
T ss_dssp             EEEEE--------ECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEE
T ss_pred             ceEEE--------eccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEE
Confidence            11111        111123367999999999999999999999999998 5777888888888999999999999 9999


Q ss_pred             EeCCCCEEEEEcCC----CeeeeecccCCcceEEEEEEEc-CCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC-
Q 015490          227 LGNRGPGRVWDLAS----SAVATPLAKENDELFASCRFSP-LNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR-  300 (406)
Q Consensus       227 ~s~d~~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-  300 (406)
                      ++.|+.|++||+++    +.....+  .+...+.+++|+| ++..      +++++.|+.|++||+++++....+..|. 
T Consensus       223 ~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~------l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  294 (383)
T 3ei3_B          223 SSVDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTK------LLTTDQRNEIRVYSSYDWSKPDQIIIHPH  294 (383)
T ss_dssp             EETTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCE------EEEEESSSEEEEEETTBTTSCSEEEECCB
T ss_pred             EeCCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCE------EEEEcCCCcEEEEECCCCccccccccccc
Confidence            99999999999987    5555555  3566799999999 8873      4566789999999999887766665442 


Q ss_pred             ----------------CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeec-ccccceEEEEEcCCCCeEEEEEC
Q 015490          301 ----------------EPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKK-AHLGIVTALAFSYDSRALVSASM  363 (406)
Q Consensus       301 ----------------~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~s~s~  363 (406)
                                      ..+..++|+|++++  +++.|+.|++||+.+++.+..+.. .|...+..++|+|++++|++++ 
T Consensus       295 ~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-  371 (383)
T 3ei3_B          295 RQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-  371 (383)
T ss_dssp             CCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-
T ss_pred             cccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-
Confidence                            23445666677666  667899999999999999888862 2567788889999999999997 


Q ss_pred             CCcEEEEEecC
Q 015490          364 DSSVRVTVIED  374 (406)
Q Consensus       364 dg~i~iw~~~~  374 (406)
                      |+.|++||+++
T Consensus       372 d~~i~iw~~~~  382 (383)
T 3ei3_B          372 GFNILIWNRED  382 (383)
T ss_dssp             TTEEEEEECC-
T ss_pred             CCcEEEEecCC
Confidence            99999999975

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3e-36  Score=276.31  Aligned_cols=274  Identities=14%  Similarity=0.142  Sum_probs=201.9

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVEN  146 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~  146 (406)
                      +++++++++..        +.+.++..+...    .+.+..+.+|...|.+++|+|++++|++++ |+.+++|++.... 
T Consensus        22 ~g~~l~~~~~d--------~~i~iw~~~~~~----~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~-   88 (377)
T 3dwl_C           22 QRTEFVTTTAT--------NQVELYEQDGNG----WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG-   88 (377)
T ss_dssp             SSSEEECCCSS--------SCBCEEEEETTE----EEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-------
T ss_pred             CCCEEEEecCC--------CEEEEEEccCCc----eEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC-
Confidence            56666554332        234555554321    146677889999999999999999999998 8999998876432 


Q ss_pred             cceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcce---Eeeeec-cCCceeEEEEccCCC
Q 015490          147 TEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEI---ILNESE-AHASVKDLSFSPDGK  222 (406)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~---~~~~~~-~~~~i~~~~~s~~~~  222 (406)
                       .        .........+...|.+++|+|++++|++++.|+.|++||+++++.   ...+.. |...|.+++|+|+++
T Consensus        89 -~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  159 (377)
T 3dwl_C           89 -T--------WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV  159 (377)
T ss_dssp             -C--------CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS
T ss_pred             -c--------eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC
Confidence             0        001122234568899999999999999999999999999988763   556666 777999999999999


Q ss_pred             EEEEEeCCCCEEEEEcC------------------CCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEE
Q 015490          223 FLVSLGNRGPGRVWDLA------------------SSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVT  284 (406)
Q Consensus       223 ~l~s~s~d~~i~iwd~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~  284 (406)
                      +|++++.|+.|++||++                  .++....+  .+...+.+++|+|+++.      +++++.|+.|++
T Consensus       160 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~------l~~~~~d~~i~i  231 (377)
T 3dwl_C          160 LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGNA------LAYAGHDSSVTI  231 (377)
T ss_dssp             EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSSC------EEEEETTTEEC-
T ss_pred             EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCCE------EEEEeCCCcEEE
Confidence            99999999999999985                  24455555  55667999999999984      456678999999


Q ss_pred             EeCCCceE----EEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCce---------------------------
Q 015490          285 WNTTTWKR----IRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQ---------------------------  333 (406)
Q Consensus       285 ~d~~~~~~----~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~---------------------------  333 (406)
                      ||+++++.    +..+..|...|.+++|+|++++|++++.++.+ +|+.....                           
T Consensus       232 wd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (377)
T 3dwl_C          232 AYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGRE  310 (377)
T ss_dssp             CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCC
T ss_pred             EECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccc
Confidence            99999877    77888899999999999999999998766655 67654211                           


Q ss_pred             ------------EEE------------EeecccccceEEEEEcCCC-C---eEEEEECCCcEEEEEe
Q 015490          334 ------------VRT------------AVKKAHLGIVTALAFSYDS-R---ALVSASMDSSVRVTVI  372 (406)
Q Consensus       334 ------------~~~------------~~~~~~~~~v~~~~~sp~~-~---~l~s~s~dg~i~iw~~  372 (406)
                                  ...            .+...|...|+++++.+.. .   .|+||+.||.|++||+
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          311 EEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             C-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             cccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                        000            0112389999999977654 3   5999999999999985

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.1e-34  Score=263.29  Aligned_cols=246  Identities=10%  Similarity=0.029  Sum_probs=209.5

Q ss_pred             EecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCCEEEEee
Q 015490          109 LRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIFAAGS  186 (406)
Q Consensus       109 ~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~  186 (406)
                      +..|.+.|++++|+|++++|++++ ++.+++|+.+....            +....+. |...|.+++|+|++++|++++
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~------------~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   71 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW------------VQVHELKEHNGQVTGVDWAPDSNRIVTCG   71 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE------------EEEEEEECCSSCEEEEEEETTTTEEEEEE
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE------------EeeeeecCCCCcccEEEEeCCCCEEEEEc
Confidence            556999999999999999999986 88888887764211            1223333 558899999999999999999


Q ss_pred             CCCeEEEEeCCCcceEee--eeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCee---eeecccCCcceEEEEEEE
Q 015490          187 ENGNLRVFKWPSLEIILN--ESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAV---ATPLAKENDELFASCRFS  261 (406)
Q Consensus       187 ~dg~i~vwd~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~  261 (406)
                      .||.|++||+++++....  +..+...|.+++|+|++++|++++.|+.|++||++.+..   ...+...+...+.+++|+
T Consensus        72 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~  151 (372)
T 1k8k_C           72 TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH  151 (372)
T ss_dssp             TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEEC
T ss_pred             CCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEc
Confidence            999999999988864433  355677999999999999999999999999999988763   344444556779999999


Q ss_pred             cCCCCceEEEEEEEcCCCcEEEEEeC------------------CCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCc
Q 015490          262 PLNNEDYVLYIAAITDRGASIVTWNT------------------TTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGD  323 (406)
Q Consensus       262 ~~~~~~~~l~~~~~~~~~~~i~~~d~------------------~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~  323 (406)
                      |+++.      +++++.++.|++||+                  ..++.+..+..|...+.+++|+|++++|++++.|+.
T Consensus       152 ~~~~~------l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  225 (372)
T 1k8k_C          152 PNSVL------LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST  225 (372)
T ss_dssp             TTSSE------EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE
T ss_pred             CCCCE------EEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCE
Confidence            99873      456678999999995                  467888888889999999999999999999999999


Q ss_pred             EEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490          324 ISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIED  374 (406)
Q Consensus       324 i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~  374 (406)
                      |++||+++++.+..+. .|..+|.+++|+|++++|+++ .|+.|++|++.+
T Consensus       226 i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          226 VCLADADKKMAVATLA-SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EEEEEGGGTTEEEEEE-CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             EEEEECCCCceeEEEc-cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            9999999999998886 899999999999999988877 999999999988

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2e-35  Score=276.15  Aligned_cols=266  Identities=14%  Similarity=0.165  Sum_probs=202.9

Q ss_pred             EEEEecCCCCccccceeEEecCCCCceEEEEcc-CCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccC
Q 015490           91 LSHFDFASNSLSDQPVAELRTDSDLPYRMAIHP-HGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVG  168 (406)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (406)
                      +..|+.....  ......+.+|.+.|++++|+| ++.+|++++ |+++++|++....   ...        .........
T Consensus       144 i~lWd~~~~~--~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~---~~~--------~~~~~~~~~  210 (435)
T 4e54_B          144 IMLWNFGIKD--KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNI---LRV--------FASSDTINI  210 (435)
T ss_dssp             EEEECSSCCS--CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCE---EEE--------EECCSSCSC
T ss_pred             EEEEECCCCC--ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCc---eeE--------EeccCCCCc
Confidence            4555554322  234556779999999999998 678888887 9999998764321   110        001111224


Q ss_pred             cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCC-EEEEEeCCCCEEEEEcCCCeeeeec
Q 015490          169 QQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGK-FLVSLGNRGPGRVWDLASSAVATPL  247 (406)
Q Consensus       169 ~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~  247 (406)
                      .+.+++|+|++++|++|+.||.|++||++. +.+..+..|...|.+++|+|++. +|++++.|+.|++||+++.+....+
T Consensus       211 ~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~  289 (435)
T 4e54_B          211 WFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASF  289 (435)
T ss_dssp             CCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCC
T ss_pred             cEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceE
Confidence            578899999999999999999999999864 55667788888999999999876 7889999999999999887655443


Q ss_pred             c--cCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCC------CeEEEEEcCCCCEEEEEe
Q 015490          248 A--KENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVRE------PVSSFNVSADGKLLAVGT  319 (406)
Q Consensus       248 ~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~------~i~~~~~sp~~~~l~~~~  319 (406)
                      .  ..+...|.+++|+|++..      +++++.|+.|++||+.+++....+..|..      .+....|+|++.+++++.
T Consensus       290 ~~~~~h~~~v~~~~~spdg~~------l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (435)
T 4e54_B          290 LYSLPHRHPVNAACFSPDGAR------LLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGR  363 (435)
T ss_dssp             SBCCBCSSCEEECCBCTTSSE------EEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEEC
T ss_pred             EEeeeccccccceeECCCCCe------eEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEE
Confidence            2  245667999999999983      56677899999999999888777765532      234567788877777764


Q ss_pred             C------------CCcEEEEECCCceEEEEeecccccceEEE-EEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490          320 A------------SGDISIIDSSSLQVRTAVKKAHLGIVTAL-AFSYDSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       320 ~------------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~-~~sp~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      .            ++.|++||..+++.+..+..+|...|.++ +|+|+|++|++|+ |++|+||++++++.
T Consensus       364 ~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          364 YPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             CCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred             cCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence            3            35799999999999988866788889887 6999999999876 88999999998875

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.2e-34  Score=259.47  Aligned_cols=252  Identities=12%  Similarity=0.183  Sum_probs=214.3

Q ss_pred             ceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCCEE
Q 015490          105 PVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIF  182 (406)
Q Consensus       105 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l  182 (406)
                      ....+.+|.+.|++++|+|++++|++++ ++.+++|++.  +++            .+..+. |...|.+++|+|++++|
T Consensus        24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~--~~~------------~~~~~~~h~~~v~~~~~~~~~~~l   89 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSL--NGE------------RLGTLDGHTGTIWSIDVDCFTKYC   89 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETT--TCC------------EEEEECCCSSCEEEEEECTTSSEE
T ss_pred             ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCC--Cch------------hhhhhhhcCCcEEEEEEcCCCCEE
Confidence            4567899999999999999999999987 8888887654  222            233333 55889999999999999


Q ss_pred             EEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCC-----CCEEEEEcCCCeeee-----------e
Q 015490          183 AAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNR-----GPGRVWDLASSAVAT-----------P  246 (406)
Q Consensus       183 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d-----~~i~iwd~~~~~~~~-----------~  246 (406)
                      ++++.||.|++||+.+++....+. +...|.+++|+|+++++++++.+     +.|++||+.......           .
T Consensus        90 ~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~  168 (369)
T 3zwl_B           90 VTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHK  168 (369)
T ss_dssp             EEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEE
T ss_pred             EEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeee
Confidence            999999999999999999887776 66789999999999999999998     999999997654221           1


Q ss_pred             cccC-CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC-ceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcE
Q 015490          247 LAKE-NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT-WKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDI  324 (406)
Q Consensus       247 ~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i  324 (406)
                      +..+ ....+.+++|+|+++.      +++++.++.|++||+++ .+.+..+..|...|.+++|+|++++|++++.|+.|
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~------l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  242 (369)
T 3zwl_B          169 IITHEGLDAATVAGWSTKGKY------IIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNS  242 (369)
T ss_dssp             EECCTTCCCEEEEEECGGGCE------EEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             ccCCcCccceeEEEEcCCCCE------EEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceE
Confidence            1111 1126889999999883      45567899999999998 78888999999999999999999999999999999


Q ss_pred             EEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCC--------------cEEEEEecCCcCCC
Q 015490          325 SIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDS--------------SVRVTVIEDKKKSG  379 (406)
Q Consensus       325 ~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg--------------~i~iw~~~~~~~~~  379 (406)
                      ++||+++++.+..+.  +...+..++|+|+++++++++.++              .+++||+.+++.+.
T Consensus       243 ~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~  309 (369)
T 3zwl_B          243 FLVDVSTLQVLKKYE--TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIG  309 (369)
T ss_dssp             EEEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEE
T ss_pred             EEEECCCCceeeeec--CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchh
Confidence            999999999998885  788999999999999999999988              89999998877654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=9.5e-36  Score=272.96  Aligned_cols=245  Identities=13%  Similarity=0.054  Sum_probs=196.5

Q ss_pred             EEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCCEEEEe
Q 015490          108 ELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIFAAG  185 (406)
Q Consensus       108 ~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~  185 (406)
                      .+..|.+.|++++|+|++++|++++ ++.++||+.+....            +....+. |...|.+++|+|++++|+++
T Consensus         6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~------------~~~~~~~~h~~~v~~~~~s~~~~~l~s~   73 (377)
T 3dwl_C            6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW------------KHARTFSDHDKIVTCVDWAPKSNRIVTC   73 (377)
T ss_dssp             EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE------------EECCCBCCCSSCEEEEEECTTTCCEEEE
T ss_pred             eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce------------EEEEEEecCCceEEEEEEeCCCCEEEEE
Confidence            4555788999999999999999986 99999998874210            2333343 45889999999999999999


Q ss_pred             eCCCeEEEEeCCCcc---eEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCee---eeecccCCcceEEEEE
Q 015490          186 SENGNLRVFKWPSLE---IILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAV---ATPLAKENDELFASCR  259 (406)
Q Consensus       186 ~~dg~i~vwd~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~  259 (406)
                      +.|++|++||+.+++   ....+..|...|.+++|+|++++|++++.|+.|++||+++++.   ...+...+...+.+++
T Consensus        74 s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~  153 (377)
T 3dwl_C           74 SQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLD  153 (377)
T ss_dssp             ETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEE
T ss_pred             eCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEE
Confidence            999999999998877   5666777888999999999999999999999999999998873   5566654677899999


Q ss_pred             EEcCCCCceEEEEEEEcCCCcEEEEEeCC------------------CceEEEEeeecCCCeEEEEEcCCCCEEEEEeCC
Q 015490          260 FSPLNNEDYVLYIAAITDRGASIVTWNTT------------------TWKRIRTKQVVREPVSSFNVSADGKLLAVGTAS  321 (406)
Q Consensus       260 ~~~~~~~~~~l~~~~~~~~~~~i~~~d~~------------------~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d  321 (406)
                      |+|+++      .+++++.|+.|++||++                  .++.+..+ .|...|.+++|+|++++|++++.|
T Consensus       154 ~~~~~~------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d  226 (377)
T 3dwl_C          154 WHPNNV------LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHD  226 (377)
T ss_dssp             ECTTSS------EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETT
T ss_pred             EcCCCC------EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCC
Confidence            999987      35666789999999985                  35566666 788999999999999999999999


Q ss_pred             CcEEEEECCCceE----EEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490          322 GDISIIDSSSLQV----RTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       322 g~i~i~d~~~~~~----~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~  373 (406)
                      |.|++||+.+++.    +..+. +|...|.+++|+|++++|++++.|+.+ +|+..
T Consensus       227 ~~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          227 SSVTIAYPSAPEQPPRALITVK-LSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             TEEC-CEECSTTSCEEECCCEE-CSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             CcEEEEECCCCCCcceeeEeec-CCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            9999999998876    66665 899999999999999999988766655 77665

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=6.3e-34  Score=265.55  Aligned_cols=259  Identities=11%  Similarity=0.152  Sum_probs=205.7

Q ss_pred             eeEEecCCCCceEEEEccC-CCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCC-E
Q 015490          106 VAELRTDSDLPYRMAIHPH-GDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGT-I  181 (406)
Q Consensus       106 ~~~~~~h~~~v~~~~~sp~-~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~-~  181 (406)
                      ......|.+.|++++|+|+ +.++++++ ++.+++|++.........  .  ........+. |...+.+++|+|++. +
T Consensus       121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~--~--~~~~~~~~~~~h~~~v~~l~~~~~~~~~  196 (430)
T 2xyi_A          121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEP--S--GECQPDLRLRGHQKEGYGLSWNPNLNGY  196 (430)
T ss_dssp             EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCT--T--CCCCCSEEEECCSSCCCCEEECTTSTTE
T ss_pred             EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCc--c--ccCCCcEEecCCCCCeEEEEeCCCCCCe
Confidence            3556789999999999998 56677766 888888877542111000  0  0112222333 457899999999998 9


Q ss_pred             EEEeeCCCeEEEEeCCCcce-------EeeeeccCCceeEEEEcc-CCCEEEEEeCCCCEEEEEcCCC---eeeeecccC
Q 015490          182 FAAGSENGNLRVFKWPSLEI-------ILNESEAHASVKDLSFSP-DGKFLVSLGNRGPGRVWDLASS---AVATPLAKE  250 (406)
Q Consensus       182 l~~~~~dg~i~vwd~~~~~~-------~~~~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~iwd~~~~---~~~~~~~~~  250 (406)
                      |++|+.||.|++||+.++..       ...+..|...|.+++|+| ++.+|++++.|+.|++||++++   +....+. .
T Consensus       197 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~-~  275 (430)
T 2xyi_A          197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-A  275 (430)
T ss_dssp             EEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE-C
T ss_pred             EEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee-c
Confidence            99999999999999987322       334556777999999999 6789999999999999999987   3444554 3


Q ss_pred             CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC-ceEEEEeeecCCCeEEEEEcCCCC-EEEEEeCCCcEEEEE
Q 015490          251 NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT-WKRIRTKQVVREPVSSFNVSADGK-LLAVGTASGDISIID  328 (406)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~i~~~~~sp~~~-~l~~~~~dg~i~i~d  328 (406)
                      +...+.+++|+|++..     ++++++.++.|++||+++ ...+..+..|...|.+++|+|+++ +|++++.|+.|++||
T Consensus       276 ~~~~v~~i~~~p~~~~-----~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd  350 (430)
T 2xyi_A          276 HTAEVNCLSFNPYSEF-----ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD  350 (430)
T ss_dssp             CSSCEEEEEECSSCTT-----EEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEE
T ss_pred             CCCCeEEEEeCCCCCC-----EEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEe
Confidence            4567999999999986     567778899999999998 566788888999999999999985 799999999999999


Q ss_pred             CCC--------------ceEEEEeecccccceEEEEEcCCCC-eEEEEECCCcEEEEEecCC
Q 015490          329 SSS--------------LQVRTAVKKAHLGIVTALAFSYDSR-ALVSASMDSSVRVTVIEDK  375 (406)
Q Consensus       329 ~~~--------------~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~s~dg~i~iw~~~~~  375 (406)
                      +..              .+.+..+. +|...|++++|+|+++ +|++++.||.|++|++.+.
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          351 LSKIGEEQSTEDAEDGPPELLFIHG-GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             GGGTTCCCCHHHHHHCCTTEEEECC-CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             CCCCccccCccccccCCcceEEEcC-CCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            986              24555554 7999999999999999 8999999999999999754

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1e-32  Score=246.53  Aligned_cols=264  Identities=17%  Similarity=0.216  Sum_probs=210.1

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-  167 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  167 (406)
                      .+..|+.++...  .....+.+|...|++++|+|+++++++|+ |+.+++|++.  +++            .+..+..+ 
T Consensus        46 tV~iWd~~tg~~--~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~--~~~------------~~~~~~~h~  109 (318)
T 4ggc_A           46 SVYLWSASSGDI--LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ--QQK------------RLRNMTSHS  109 (318)
T ss_dssp             EEEEEETTTCCE--EEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETT--TTE------------EEEEEECCS
T ss_pred             EEEEEECCCCCE--EEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecC--Cce------------eEEEecCcc
Confidence            466677665321  12234457888999999999999999998 8888887654  222            23333333 


Q ss_pred             CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-eEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeee
Q 015490          168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLE-IILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATP  246 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~  246 (406)
                      ..+.+  +++++..+++++.++.+++|+..... ....+..|...+..+.+++++++|++++.|+.|++||+++++....
T Consensus       110 ~~~~~--~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  187 (318)
T 4ggc_A          110 ARVGS--LSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV  187 (318)
T ss_dssp             SCEEE--EEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSC
T ss_pred             ceEEE--eecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccccc
Confidence            45554  45567899999999999999987664 4455667778999999999999999999999999999988764322


Q ss_pred             c---ccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEe--CC
Q 015490          247 L---AKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGT--AS  321 (406)
Q Consensus       247 ~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~--~d  321 (406)
                      .   ...+...+..+.++|.+..   ++.+++++.++.|++||.+......... +...+..+.|+|+++.+++++  .|
T Consensus       188 ~~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d  263 (318)
T 4ggc_A          188 PLQTFTQHQGAVKAVAWCPWQSN---VLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQ  263 (318)
T ss_dssp             CSEEECCCCSCEEEEEECTTSTT---EEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTT
T ss_pred             ceeeecccCCceEEEEecCCCCc---EEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCC
Confidence            2   2234456889999999886   4556788899999999999887766554 557799999999999888765  69


Q ss_pred             CcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490          322 GDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       322 g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~  376 (406)
                      +.|++||+++++.+..+. +|.+.|++++|+|+|++|+||+.||+|+|||+.+..
T Consensus       264 ~~i~iwd~~~~~~~~~l~-gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          264 NQLVIWKYPTMAKVAELK-GHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             CCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred             CEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            999999999999999996 899999999999999999999999999999997654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.9e-34  Score=290.37  Aligned_cols=254  Identities=13%  Similarity=0.205  Sum_probs=219.5

Q ss_pred             cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCCE
Q 015490          104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTI  181 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~  181 (406)
                      .....+.+|.+.|.+++|+|++++|++++ ++.++||++.  ++.            .+..+. +...|.+++|+|++++
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~--~~~------------~~~~~~~~~~~v~~~~~s~~~~~   69 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYE--TQV------------EVRSIQVTETPVRAGKFIARKNW   69 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETT--TTE------------EEEEEECCSSCEEEEEEEGGGTE
T ss_pred             ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECC--CCc------------eEEEEecCCCcEEEEEEeCCCCE
Confidence            46678999999999999999999999998 7777777654  222            223333 5588999999999999


Q ss_pred             EEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCC-eeeeecccCCcceEEEEEE
Q 015490          182 FAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASS-AVATPLAKENDELFASCRF  260 (406)
Q Consensus       182 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~  260 (406)
                      |++|+.||.|++||+.+++.+..+..|...|++++|+|++++|++++.|+.|++||+.++ .....+. .+...+.+++|
T Consensus        70 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~~v~~~~~  148 (814)
T 3mkq_A           70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE-GHEHFVMCVAF  148 (814)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEE-CCSSCEEEEEE
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEc-CCCCcEEEEEE
Confidence            999999999999999999999999889899999999999999999999999999999887 4444444 44567899999


Q ss_pred             Ec-CCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC-CCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCceEEE
Q 015490          261 SP-LNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR-EPVSSFNVSA--DGKLLAVGTASGDISIIDSSSLQVRT  336 (406)
Q Consensus       261 ~~-~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~i~~~~~sp--~~~~l~~~~~dg~i~i~d~~~~~~~~  336 (406)
                      +| ++.      .+++++.++.|++||+.+++....+..+. ..+.+++|+|  ++.+|++++.||.|++||+.+++.+.
T Consensus       149 ~p~~~~------~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~  222 (814)
T 3mkq_A          149 NPKDPS------TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA  222 (814)
T ss_dssp             ETTEEE------EEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEE
T ss_pred             EcCCCC------EEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEE
Confidence            99 554      45666789999999998887777766554 7899999999  99999999999999999999999988


Q ss_pred             EeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCC
Q 015490          337 AVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSG  379 (406)
Q Consensus       337 ~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~  379 (406)
                      .+. +|...|.+++|+|++++|++++.||.|++||+.+++.+.
T Consensus       223 ~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~  264 (814)
T 3mkq_A          223 TLE-GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK  264 (814)
T ss_dssp             EEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEE
T ss_pred             EEc-CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            886 899999999999999999999999999999999876543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=9.3e-35  Score=268.11  Aligned_cols=260  Identities=15%  Similarity=0.158  Sum_probs=214.3

Q ss_pred             ceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecc-cccCcEEEEEECCC----
Q 015490          105 PVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQL-ENVGQQLALTFDSE----  178 (406)
Q Consensus       105 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~----  178 (406)
                      ....+.+|.+.|++++|+|  ++|++++ |+.+++|+++......        .......+ .+...|.+++|+|+    
T Consensus         8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~--------~~~~~~~~~~h~~~v~~~~~~~~~~~~   77 (397)
T 1sq9_A            8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNEN--------PKDKSYSHFVHKSGLHHVDVLQAIERD   77 (397)
T ss_dssp             EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCC--------GGGGEEEEECCTTCEEEEEEEEEEETT
T ss_pred             hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCccccc--------CCCcceEEecCCCcEEEEEEecccccC
Confidence            4556789999999999999  7888877 8888887766432110        01112222 35588999999999    


Q ss_pred             C---CEEEEeeCCCeEEEEeCCCcce-----Eeeeecc-----CCceeEEEEc----cCCCE-EEEEeCCCCEEEEEcCC
Q 015490          179 G---TIFAAGSENGNLRVFKWPSLEI-----ILNESEA-----HASVKDLSFS----PDGKF-LVSLGNRGPGRVWDLAS  240 (406)
Q Consensus       179 g---~~l~~~~~dg~i~vwd~~~~~~-----~~~~~~~-----~~~i~~~~~s----~~~~~-l~s~s~d~~i~iwd~~~  240 (406)
                      +   ++|++++.||.|++||+.+++.     ...+..+     ...|.+++|+    |++++ |++++.|+.|++||+++
T Consensus        78 g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  157 (397)
T 1sq9_A           78 AFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP  157 (397)
T ss_dssp             TEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred             CccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCc
Confidence            9   9999999999999999988876     6677777     4799999999    99999 99999999999999988


Q ss_pred             ------Ceeee-----ecc------cCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeee---c-
Q 015490          241 ------SAVAT-----PLA------KENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQV---V-  299 (406)
Q Consensus       241 ------~~~~~-----~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~---~-  299 (406)
                            ++.+.     .+.      ..+...+.+++|+|++ .      +++++.++.|++||+++++.+..+..   | 
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~------l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~  230 (397)
T 1sq9_A          158 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-L------IATGFNNGTVQISELSTLRPLYNFESQHSMI  230 (397)
T ss_dssp             SSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-E------EEEECTTSEEEEEETTTTEEEEEEECCC---
T ss_pred             cccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-e------EEEEeCCCcEEEEECCCCceeEEEecccccc
Confidence                  55554     442      2345668899999988 5      45667899999999999999999998   8 


Q ss_pred             --CCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCceEEEEeecc-------------cccceEEEEEcCCCCeEEEE
Q 015490          300 --REPVSSFNVSADGKLLAVGTAS---GDISIIDSSSLQVRTAVKKA-------------HLGIVTALAFSYDSRALVSA  361 (406)
Q Consensus       300 --~~~i~~~~~sp~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~-------------~~~~v~~~~~sp~~~~l~s~  361 (406)
                        ...+.+++|+|++++|++++.|   +.|++||+++++.+..+. .             |...|.+++|+|++++|+++
T Consensus       231 ~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  309 (397)
T 1sq9_A          231 NNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLS-VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA  309 (397)
T ss_dssp             CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEEC-BC--------CCBSBSSCEEEEEECSSSSEEEEE
T ss_pred             ccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceec-cCcccccccccccccCCcEEEEEECCCCCEEEEE
Confidence              8999999999999999999999   999999999999988886 6             99999999999999999999


Q ss_pred             ECCCcEEEEEecCCcCCCCch
Q 015490          362 SMDSSVRVTVIEDKKKSGGLN  382 (406)
Q Consensus       362 s~dg~i~iw~~~~~~~~~~~~  382 (406)
                      +.||.|++||+++++.+..+.
T Consensus       310 ~~dg~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          310 GWDGKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             ETTSEEEEEETTTTEEEEEEE
T ss_pred             eCCCeEEEEEcCCCceeEEEe
Confidence            999999999999887655443

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.6e-33  Score=260.49  Aligned_cols=271  Identities=15%  Similarity=0.106  Sum_probs=210.3

Q ss_pred             cceeEEecCCCCceEEEEcc-CCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECC-CCC
Q 015490          104 QPVAELRTDSDLPYRMAIHP-HGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDS-EGT  180 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp-~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~  180 (406)
                      +....+.+|.+.|++++|+| ++++|++++ ++.+++|+++.......................+...|.+++|+| ++.
T Consensus        34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  113 (408)
T 4a11_B           34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG  113 (408)
T ss_dssp             TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred             cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc
Confidence            35667788999999999999 999999998 888999877643222111100000000000012558899999999 778


Q ss_pred             EEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccC---CCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEE
Q 015490          181 IFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPD---GKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFAS  257 (406)
Q Consensus       181 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~---~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  257 (406)
                      +|++++.||.|++||+.+++....+. +...+.++.|++.   +.++++++.|+.|++||+++++....+..+ ...+.+
T Consensus       114 ~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~v~~  191 (408)
T 4a11_B          114 MFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGH-RQEILA  191 (408)
T ss_dssp             CEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCC-CSCEEE
T ss_pred             EEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCC-CCcEEE
Confidence            99999999999999999988776654 5668999999884   459999999999999999999888877754 456899


Q ss_pred             EEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCce-EEEEe---------------eecCCCeEEEEEcCCCCEEEEEeCC
Q 015490          258 CRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK-RIRTK---------------QVVREPVSSFNVSADGKLLAVGTAS  321 (406)
Q Consensus       258 ~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~-~~~~~---------------~~~~~~i~~~~~sp~~~~l~~~~~d  321 (406)
                      ++|+|+++.     ++++++.++.|++||+++.. .+..+               ..|...|.+++|+|++++|++++.|
T Consensus       192 ~~~~~~~~~-----ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  266 (408)
T 4a11_B          192 VSWSPRYDY-----ILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTD  266 (408)
T ss_dssp             EEECSSCTT-----EEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEECCCCCc-----EEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCC
Confidence            999999986     56677889999999998765 33333               4577889999999999999999999


Q ss_pred             CcEEEEECCCce-----------------------------------------------EEEEeecccccceEEEEEcCC
Q 015490          322 GDISIIDSSSLQ-----------------------------------------------VRTAVKKAHLGIVTALAFSYD  354 (406)
Q Consensus       322 g~i~i~d~~~~~-----------------------------------------------~~~~~~~~~~~~v~~~~~sp~  354 (406)
                      |.|++||+.+++                                               .+..+. +|...|.+++|+|+
T Consensus       267 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~s~~  345 (408)
T 4a11_B          267 NRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK-GHYKTVDCCVFQSN  345 (408)
T ss_dssp             SCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC-CCSSCEEEEEEETT
T ss_pred             CeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec-cCCCeEEEEEEcCC
Confidence            999999987643                                               334443 78999999999999


Q ss_pred             CCeEEEEECCCcEEEEEecCCcCCCCch
Q 015490          355 SRALVSASMDSSVRVTVIEDKKKSGGLN  382 (406)
Q Consensus       355 ~~~l~s~s~dg~i~iw~~~~~~~~~~~~  382 (406)
                      +++|++++.||.|++|++++++.+...+
T Consensus       346 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~  373 (408)
T 4a11_B          346 FQELYSGSRDCNILAWVPSLYEPVPDDD  373 (408)
T ss_dssp             TTEEEEEETTSCEEEEEECC--------
T ss_pred             CCEEEEECCCCeEEEEeCCCCCccCCCC
Confidence            9999999999999999999988765543

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.1e-34  Score=266.78  Aligned_cols=254  Identities=13%  Similarity=0.192  Sum_probs=204.9

Q ss_pred             cCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecc-cccceeecceeccceeeecc---c--ccCcEEEEE--ECCCCCE
Q 015490          111 TDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEV-ENTEIRRLGVKISEKVLSQL---E--NVGQQLALT--FDSEGTI  181 (406)
Q Consensus       111 ~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~---~--~~~~v~~~~--~s~~g~~  181 (406)
                      +|...|.+++|+|++.+|++++ |+.+++|+++.. .+........    ..+..+   .  +...+.++.  +++++.+
T Consensus       109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (437)
T 3gre_A          109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNC----ECIRKINLKNFGKNEYAVRMRAFVNEEKSL  184 (437)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEE----EEEEEEEGGGGSSCCCEEEEEEEECSSCEE
T ss_pred             cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeecccc----ceeEEEEccCcccccCceEEEEEEcCCCCE
Confidence            5999999999999999999988 899999988633 2222222211    122221   1  456677777  6789999


Q ss_pred             EEEeeCCCeEEEEeCCCcceEeeeec--cCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEE
Q 015490          182 FAAGSENGNLRVFKWPSLEIILNESE--AHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCR  259 (406)
Q Consensus       182 l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  259 (406)
                      |++|+.|+.|++||+++++.+..+..  |...|++++|+|++++|++++.|+.|++||+++++.+..+...+...+.+++
T Consensus       185 l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~  264 (437)
T 3gre_A          185 LVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVE  264 (437)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEE
T ss_pred             EEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEE
Confidence            99999999999999999999888887  6779999999999999999999999999999999998887655566899997


Q ss_pred             EEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeec--------------------------CCCeEEEEEcCCCC
Q 015490          260 FSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVV--------------------------REPVSSFNVSADGK  313 (406)
Q Consensus       260 ~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--------------------------~~~i~~~~~sp~~~  313 (406)
                      |+|.-....  ..+++++.|+.|++||+++++.+..+..|                          ...|.+++|+ +++
T Consensus       265 ~~~~~s~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~  341 (437)
T 3gre_A          265 VCQFYGKNS--VIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK  341 (437)
T ss_dssp             ECTTTCTTE--EEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE
T ss_pred             eccccCCCc--cEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce
Confidence            776422111  14567789999999999999988887754                          3347788888 778


Q ss_pred             EEEEEeCCCcEEEEECCCceEEEEeec------------------------------------ccccceEEEEEcCC--C
Q 015490          314 LLAVGTASGDISIIDSSSLQVRTAVKK------------------------------------AHLGIVTALAFSYD--S  355 (406)
Q Consensus       314 ~l~~~~~dg~i~i~d~~~~~~~~~~~~------------------------------------~~~~~v~~~~~sp~--~  355 (406)
                      +|++|+.|+.|++||+.+++....+..                                    .|...|++++|+++  +
T Consensus       342 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~  421 (437)
T 3gre_A          342 ILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDET  421 (437)
T ss_dssp             EEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSS
T ss_pred             EEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCc
Confidence            999999999999999998876665541                                    18899999999998  7


Q ss_pred             CeEEEEECCCcEEEEE
Q 015490          356 RALVSASMDSSVRVTV  371 (406)
Q Consensus       356 ~~l~s~s~dg~i~iw~  371 (406)
                      .+|++|+.||.|+||+
T Consensus       422 ~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          422 PLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             EEEEEEETTSCEEEEC
T ss_pred             eEEEEEcCCceEEEeC
Confidence            8999999999999995

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-33  Score=263.13  Aligned_cols=260  Identities=15%  Similarity=0.148  Sum_probs=210.6

Q ss_pred             eEEecCCCCceEEEEccCCC-eEEEEe-cCCeEEEEEec--ccccc------eeecceeccceeeecccccCcEEEEEEC
Q 015490          107 AELRTDSDLPYRMAIHPHGD-GIICAL-QNSCRLFEWDE--VENTE------IRRLGVKISEKVLSQLENVGQQLALTFD  176 (406)
Q Consensus       107 ~~~~~h~~~v~~~~~sp~~~-~l~~~~-~~~~~i~~~~~--~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~s  176 (406)
                      .....|.+.|.+++|+|+++ +|++++ ++.+++|++..  .+++.      ...+... .........+...|.+++|+
T Consensus        39 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s  117 (425)
T 1r5m_A           39 LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHP-FALSASSGKTTNQVTCLAWS  117 (425)
T ss_dssp             CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECC-CCCC------CBCEEEEEEC
T ss_pred             eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccc-ccccccccCCCCceEEEEEc
Confidence            34456779999999999999 999887 88899988721  11221      1111000 00000001134589999999


Q ss_pred             CCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeeccc-------
Q 015490          177 SEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAK-------  249 (406)
Q Consensus       177 ~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-------  249 (406)
                      |++++|++++.||.|++|| .+++....+..|...|.+++|+|++++|++++.|+.|++||+.+++....+..       
T Consensus       118 ~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  196 (425)
T 1r5m_A          118 HDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS  196 (425)
T ss_dssp             TTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC------
T ss_pred             CCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccc
Confidence            9999999999999999999 67778888888888999999999999999999999999999988766543321       


Q ss_pred             ------------------------------------------------CCcceEEEEEEEcCCCCceEEEEEEEcCCCcE
Q 015490          250 ------------------------------------------------ENDELFASCRFSPLNNEDYVLYIAAITDRGAS  281 (406)
Q Consensus       250 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  281 (406)
                                                                      .+...+.+++|+|+++.      +++++.++.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~------l~~~~~d~~  270 (425)
T 1r5m_A          197 INAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKL------LLSASDDGT  270 (425)
T ss_dssp             ---------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTE------EEEEETTSC
T ss_pred             eeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCE------EEEEcCCCE
Confidence                                                            23456889999999873      455678999


Q ss_pred             EEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEE
Q 015490          282 IVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSA  361 (406)
Q Consensus       282 i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~  361 (406)
                      |++||+++++.+..+..|...+.+++|+|++ ++++++.|+.|++||+.+++.+..+. .|...|.+++|+|++++|+++
T Consensus       271 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~  348 (425)
T 1r5m_A          271 LRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSI-VDGVPIFAGRISQDGQKYAVA  348 (425)
T ss_dssp             EEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEE-CTTCCEEEEEECTTSSEEEEE
T ss_pred             EEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecc-cCCccEEEEEEcCCCCEEEEE
Confidence            9999999999888888899999999999999 99999999999999999999998886 789999999999999999999


Q ss_pred             ECCCcEEEEEecCCc
Q 015490          362 SMDSSVRVTVIEDKK  376 (406)
Q Consensus       362 s~dg~i~iw~~~~~~  376 (406)
                      +.||.|++||+.+++
T Consensus       349 ~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          349 FMDGQVNVYDLKKLN  363 (425)
T ss_dssp             ETTSCEEEEECHHHH
T ss_pred             ECCCeEEEEECCCCc
Confidence            999999999998876

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.2e-33  Score=284.49  Aligned_cols=275  Identities=14%  Similarity=0.195  Sum_probs=230.0

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVEN  146 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~  146 (406)
                      +++++++++..|          .+..|+...    ...+..+.+|...|.+++|+|++++|++++ ++.+++|++.  ++
T Consensus        24 ~~~~la~~~~~g----------~v~iwd~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~--~~   87 (814)
T 3mkq_A           24 TEPWVLTTLYSG----------RVEIWNYET----QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN--TG   87 (814)
T ss_dssp             SSSEEEEEETTS----------EEEEEETTT----TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT--TC
T ss_pred             CCCEEEEEeCCC----------EEEEEECCC----CceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECC--CC
Confidence            677777765433          455666544    347788999999999999999999999998 7777776654  22


Q ss_pred             cceeecceeccceeeeccc-ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc-ceEeeeeccCCceeEEEEcc-CCCE
Q 015490          147 TEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSL-EIILNESEAHASVKDLSFSP-DGKF  223 (406)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~-~~~~  223 (406)
                      +            .+..+. |...|.+++|+|++++|++++.||.|++||++++ .....+..|...|.+++|+| +++.
T Consensus        88 ~------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  155 (814)
T 3mkq_A           88 E------------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST  155 (814)
T ss_dssp             C------------EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEE
T ss_pred             c------------EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCE
Confidence            2            222333 5588999999999999999999999999999887 56666777888999999999 8889


Q ss_pred             EEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEc--CCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCC
Q 015490          224 LVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSP--LNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVRE  301 (406)
Q Consensus       224 l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~  301 (406)
                      |++++.|+.|++||+.+++....+..++...+.+++|+|  ++.      .+++++.++.|++||+++++.+..+..|..
T Consensus       156 l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~  229 (814)
T 3mkq_A          156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP------YMITASDDLTIKIWDYQTKSCVATLEGHMS  229 (814)
T ss_dssp             EEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCC------EEEEECTTSEEEEEETTTTEEEEEEECCSS
T ss_pred             EEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCC------EEEEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence            999999999999999988888777776667788999999  666      356678899999999999999999999999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCe-EEEEECCCcEEEEEecCCcC
Q 015490          302 PVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRA-LVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       302 ~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~s~s~dg~i~iw~~~~~~~  377 (406)
                      .|.+++|+|++++|++++.||.|++||+.+++....+. .|...+.+++|+|+++. +++++.|+.+.+|++.....
T Consensus       230 ~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (814)
T 3mkq_A          230 NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN-VGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEP  305 (814)
T ss_dssp             CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEEC-CSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSC
T ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCc
Confidence            99999999999999999999999999999999988886 78899999999999874 35555677799999876543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.1e-34  Score=269.78  Aligned_cols=242  Identities=13%  Similarity=0.104  Sum_probs=204.9

Q ss_pred             CceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEE
Q 015490          115 LPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRV  193 (406)
Q Consensus       115 ~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~v  193 (406)
                      .+++++|+|++++|++++ ++.+++|+....              .....+..+..+....|++++++|++|+.||.|++
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i  123 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIR--------------DGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKV  123 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSE--------------ETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEE
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEeccc--------------ceeeEEecCCceEEEEEecCCCEEEEEECCCCEEE
Confidence            456899999999999987 888888765532              12222334445566688999999999999999999


Q ss_pred             EeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEE
Q 015490          194 FKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIA  273 (406)
Q Consensus       194 wd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  273 (406)
                      ||+.+++....+..|...|++++|+|++++|++++.|+.|++||+++++....+.. +...+.+++|+|+++.      +
T Consensus       124 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~------l  196 (420)
T 3vl1_A          124 LDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIG-HRATVTDIAIIDRGRN------V  196 (420)
T ss_dssp             ECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEEC-CSSCEEEEEEETTTTE------E
T ss_pred             EeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcC-CCCcEEEEEEcCCCCE------E
Confidence            99999988877778888999999999999999999999999999999988888765 4557899999999883      4


Q ss_pred             EEcCCCcEEEEEeCCCceEEEEeeec---CCC---------------------eEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 015490          274 AITDRGASIVTWNTTTWKRIRTKQVV---REP---------------------VSSFNVSADGKLLAVGTASGDISIIDS  329 (406)
Q Consensus       274 ~~~~~~~~i~~~d~~~~~~~~~~~~~---~~~---------------------i~~~~~sp~~~~l~~~~~dg~i~i~d~  329 (406)
                      ++++.|+.|++||+++++.+..+..+   ...                     +.+++|+|++++|++|+.||.|++||+
T Consensus       197 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~  276 (420)
T 3vl1_A          197 LSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNV  276 (420)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEET
T ss_pred             EEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEEC
Confidence            56778999999999999998888753   233                     444556889999999999999999999


Q ss_pred             CCceEEEEeecccccceEEEEEcCCCC-eEEEEECCCcEEEEEecCCcC
Q 015490          330 SSLQVRTAVKKAHLGIVTALAFSYDSR-ALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       330 ~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      ++++....+...|...|.+++|+|+++ +|++++.||.|++||+++++.
T Consensus       277 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~  325 (420)
T 3vl1_A          277 FSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC  325 (420)
T ss_dssp             TTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS
T ss_pred             CCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC
Confidence            999988888667889999999999998 999999999999999998754

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.9e-35  Score=271.92  Aligned_cols=263  Identities=14%  Similarity=0.156  Sum_probs=212.4

Q ss_pred             cceeEE-ecCCCCceEEEEcc-CCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCC
Q 015490          104 QPVAEL-RTDSDLPYRMAIHP-HGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGT  180 (406)
Q Consensus       104 ~~~~~~-~~h~~~v~~~~~sp-~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  180 (406)
                      +.+..+ .+|.+.|++++|+| ++.+|++++ |+.++||++.......        .......+.|...|.+++|+|+++
T Consensus        53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~--------~~~~~~~~~h~~~v~~~~~~~~~~  124 (437)
T 3gre_A           53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE--------VYSSSLTYDCSSTVTQITMIPNFD  124 (437)
T ss_dssp             CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC--------CCSCSEEEECSSCEEEEEECTTSS
T ss_pred             eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc--------ccceeeeccCCCCEEEEEEeCCCC
Confidence            567788 89999999999999 999999998 8889998765421111        011122334678999999999999


Q ss_pred             EEEEeeCCCeEEEEeCC---CcceEeeeec------------cCCceeEEE--EccCCCEEEEEeCCCCEEEEEcCCCee
Q 015490          181 IFAAGSENGNLRVFKWP---SLEIILNESE------------AHASVKDLS--FSPDGKFLVSLGNRGPGRVWDLASSAV  243 (406)
Q Consensus       181 ~l~~~~~dg~i~vwd~~---~~~~~~~~~~------------~~~~i~~~~--~s~~~~~l~s~s~d~~i~iwd~~~~~~  243 (406)
                      +|++|+.||.|++||++   +++.......            +...+.++.  +++++++|++++.|+.|++||+++++.
T Consensus       125 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  204 (437)
T 3gre_A          125 AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER  204 (437)
T ss_dssp             EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE
T ss_pred             EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee
Confidence            99999999999999994   4444332221            233566666  567899999999999999999999999


Q ss_pred             eeecccC-CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEee-ecCCCeEEEEEc----CCCCEEEE
Q 015490          244 ATPLAKE-NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQ-VVREPVSSFNVS----ADGKLLAV  317 (406)
Q Consensus       244 ~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~i~~~~~s----p~~~~l~~  317 (406)
                      +..+..+ +...+.+++|+|++.      .+++++.|+.|++||+++++.+..+. .|...|.+++|+    |++++|++
T Consensus       205 ~~~~~~~~h~~~v~~~~~s~~~~------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s  278 (437)
T 3gre_A          205 LQIIENSPRHGAVSSICIDEECC------VLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVG  278 (437)
T ss_dssp             EEEEECCGGGCCEEEEEECTTSC------EEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEE
T ss_pred             eEEEccCCCCCceEEEEECCCCC------EEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEE
Confidence            8888764 566799999999987      45677889999999999999988886 566789999665    46889999


Q ss_pred             EeCCCcEEEEECCCceEEEEeec-----------------------c--cccceEEEEEcCCCCeEEEEECCCcEEEEEe
Q 015490          318 GTASGDISIIDSSSLQVRTAVKK-----------------------A--HLGIVTALAFSYDSRALVSASMDSSVRVTVI  372 (406)
Q Consensus       318 ~~~dg~i~i~d~~~~~~~~~~~~-----------------------~--~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~  372 (406)
                      |+.||.|++||+++++.+..+..                       +  |...|++++|+ ++++|++++.|+.|++||+
T Consensus       279 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~  357 (437)
T 3gre_A          279 GSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSL  357 (437)
T ss_dssp             ESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEET
T ss_pred             EcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEEC
Confidence            99999999999999988777651                       1  66778999999 7789999999999999999


Q ss_pred             cCCcCCCCc
Q 015490          373 EDKKKSGGL  381 (406)
Q Consensus       373 ~~~~~~~~~  381 (406)
                      .+++.+..+
T Consensus       358 ~~~~~~~~~  366 (437)
T 3gre_A          358 NELSSSKAV  366 (437)
T ss_dssp             TCGGGCEEE
T ss_pred             CCcccceEE
Confidence            998865443

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=4.1e-34  Score=265.90  Aligned_cols=277  Identities=12%  Similarity=0.134  Sum_probs=217.0

Q ss_pred             cCCCCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEe
Q 015490           64 DDIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWD  142 (406)
Q Consensus        64 ~~~~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~  142 (406)
                      ..+++++.+++++..|          .+..|+...    .+....+.+|.+.|++++|+|++++|++++ |+.+++|++.
T Consensus       104 ~~~~~~~~l~~~~~dg----------~i~iwd~~~----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~  169 (420)
T 3vl1_A          104 TAKLQMRRFILGTTEG----------DIKVLDSNF----NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK  169 (420)
T ss_dssp             EECSSSCEEEEEETTS----------CEEEECTTS----CEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             EEecCCCEEEEEECCC----------CEEEEeCCC----cceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            3455666776664433          345555543    235566689999999999999999999987 7878887654


Q ss_pred             cccccceeecceeccceeeeccc-ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccC------------
Q 015490          143 EVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAH------------  209 (406)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~------------  209 (406)
                      .  ++.            +..+. |...|.+++|+|++++|++++.|+.|++||+++++....+..+.            
T Consensus       170 ~--~~~------------~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~  235 (420)
T 3vl1_A          170 D--GSN------------PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALF  235 (420)
T ss_dssp             T--CCC------------CEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEE
T ss_pred             C--CcC------------ceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEe
Confidence            2  222            22233 55889999999999999999999999999999998887776432            


Q ss_pred             ------------CceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcC
Q 015490          210 ------------ASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITD  277 (406)
Q Consensus       210 ------------~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  277 (406)
                                  ..+.+++|+|++++|++++.||.|++||+++++....+...+...+.+++|+|++..     ++++++
T Consensus       236 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~l~~g~  310 (420)
T 3vl1_A          236 VGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNAN-----YIYAGY  310 (420)
T ss_dssp             ECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTT-----EEEEEE
T ss_pred             cCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCC-----EEEEEe
Confidence                        344555668899999999999999999999999888887777778999999999985     456677


Q ss_pred             CCcEEEEEeCCCceE-EEEeee-cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCce---------EEEEeecccccce
Q 015490          278 RGASIVTWNTTTWKR-IRTKQV-VREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQ---------VRTAVKKAHLGIV  346 (406)
Q Consensus       278 ~~~~i~~~d~~~~~~-~~~~~~-~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~~v  346 (406)
                      .|+.|++||+++++. +..+.. +...+.++.+ +++++|++++.|+.|++||+....         ....+ ..|...|
T Consensus       311 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~-~~~~~~v  388 (420)
T 3vl1_A          311 ENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFL-VSNDDAV  388 (420)
T ss_dssp             TTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEE-CCSSCCC
T ss_pred             CCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEE-ccCCcce
Confidence            899999999998753 666666 5677887755 578899999999999999987631         11223 3688899


Q ss_pred             EEEEEcCCCC---eEEEEECCCcEEEEEecCC
Q 015490          347 TALAFSYDSR---ALVSASMDSSVRVTVIEDK  375 (406)
Q Consensus       347 ~~~~~sp~~~---~l~s~s~dg~i~iw~~~~~  375 (406)
                      .+++|+|+++   .+++++.+|.+.+|+++++
T Consensus       389 ~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~~  420 (420)
T 3vl1_A          389 SQFCYVSDDESNGEVLEVGKNNFCALYNLSNP  420 (420)
T ss_dssp             CEEEEECCSSSSCEEEEEETTTEEEEEESCC-
T ss_pred             EEEEEccCCCCcceEEEEcCCceEEEEeccCC
Confidence            9999999999   7888889999999998763

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=7.4e-34  Score=258.01  Aligned_cols=252  Identities=13%  Similarity=0.143  Sum_probs=203.1

Q ss_pred             eEEecCCCCceEEEEccCCCeEEEEe-----cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCC---
Q 015490          107 AELRTDSDLPYRMAIHPHGDGIICAL-----QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSE---  178 (406)
Q Consensus       107 ~~~~~h~~~v~~~~~sp~~~~l~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---  178 (406)
                      ..+.+|.+.|.+++|+|++..+++++     ++.+++|+++.  ++.          .......+...|.+++|+|+   
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~--~~~----------~~~~~~~~~~~v~~~~~~~~~~~   79 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQH--GDL----------KLLREIEKAKPIKCGTFGATSLQ   79 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECS--SSE----------EEEEEEEESSCEEEEECTTCCTT
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCC--Ccc----------cceeeecccCcEEEEEEcCCCCC
Confidence            34578999999999999998777655     56667766653  221          11223356789999999998   


Q ss_pred             CCEEEEeeCCCeEEEEeCCCcc-eEeeeeccCCceeEEEE------ccCCCEEEEEeCCCCEEEEEcCCCe-eeeecccC
Q 015490          179 GTIFAAGSENGNLRVFKWPSLE-IILNESEAHASVKDLSF------SPDGKFLVSLGNRGPGRVWDLASSA-VATPLAKE  250 (406)
Q Consensus       179 g~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~i~~~~~------s~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~~  250 (406)
                      +++|++|+.||.|++||+.+++ ....+..|...|.+++|      +|++++|++++.|+.|++||+++++ ....+..+
T Consensus        80 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~  159 (357)
T 3i2n_A           80 QRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPV  159 (357)
T ss_dssp             TCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCC
T ss_pred             CceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecccc
Confidence            6999999999999999999887 77778888889999954      6899999999999999999999876 55555433


Q ss_pred             C---cceEEEEE----EEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcC---CCCEEEEEeC
Q 015490          251 N---DELFASCR----FSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSA---DGKLLAVGTA  320 (406)
Q Consensus       251 ~---~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp---~~~~l~~~~~  320 (406)
                      .   ...+.++.    |+|++.      .+++++.++.|++||+++++.... ..+...+.+++|+|   ++++|++++.
T Consensus       160 ~~~~~~~v~~~~~~~~~~~~~~------~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~  232 (357)
T 3i2n_A          160 QGENKRDCWTVAFGNAYNQEER------VVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSL  232 (357)
T ss_dssp             TTSCCCCEEEEEEECCCC-CCC------EEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEES
T ss_pred             CCCCCCceEEEEEEeccCCCCC------EEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECC
Confidence            2   33678888    667776      355667899999999999887544 56778999999999   9999999999


Q ss_pred             CCcEEEEECCCceEEEEee----cccccceEEEEEcCCCC-eEEEEECCCcEEEEEecCCcC
Q 015490          321 SGDISIIDSSSLQVRTAVK----KAHLGIVTALAFSYDSR-ALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       321 dg~i~i~d~~~~~~~~~~~----~~~~~~v~~~~~sp~~~-~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      ||.|++||+++++....+.    .+|...|.+++|+|+++ +|++++.||.|++||++++..
T Consensus       233 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  294 (357)
T 3i2n_A          233 EGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQ  294 (357)
T ss_dssp             TTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSC
T ss_pred             CCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcc
Confidence            9999999998766544332    27999999999999998 899999999999999987654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=5.9e-34  Score=263.45  Aligned_cols=271  Identities=10%  Similarity=0.100  Sum_probs=211.3

Q ss_pred             EEEEecCCCCccccceeEEecCCCCceEEEEcc-CCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-cc
Q 015490           91 LSHFDFASNSLSDQPVAELRTDSDLPYRMAIHP-HGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NV  167 (406)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  167 (406)
                      +..|+..........+..+.+|.+.|++++|+| ++.+|++++ |+.++||++......  ..     ....+..+. |.
T Consensus        59 i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~--~~-----~~~~~~~~~~h~  131 (402)
T 2aq5_A           59 FLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLV--LP-----LREPVITLEGHT  131 (402)
T ss_dssp             EEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCS--SC-----BCSCSEEEECCS
T ss_pred             EEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCc--cc-----cCCceEEecCCC
Confidence            444554333222345667889999999999999 899999988 888888877643211  00     012223333 55


Q ss_pred             CcEEEEEECCCC-CEEEEeeCCCeEEEEeCCCcceEeee--eccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeee
Q 015490          168 GQQLALTFDSEG-TIFAAGSENGNLRVFKWPSLEIILNE--SEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVA  244 (406)
Q Consensus       168 ~~v~~~~~s~~g-~~l~~~~~dg~i~vwd~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~  244 (406)
                      ..|.+++|+|++ .+|++++.||.|++||+++++....+  ..|...|.+++|+|++++|++++.|+.|++||+++++.+
T Consensus       132 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  211 (402)
T 2aq5_A          132 KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVV  211 (402)
T ss_dssp             SCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEE
T ss_pred             CeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCcee
Confidence            889999999998 69999999999999999999988888  677889999999999999999999999999999999998


Q ss_pred             eec-ccCCcceEEEEEEEcCCCCceEEEEEEEc---CCCcEEEEEeCCCceE-EEEee-ecCCCeEEEEEcCCCCEEEE-
Q 015490          245 TPL-AKENDELFASCRFSPLNNEDYVLYIAAIT---DRGASIVTWNTTTWKR-IRTKQ-VVREPVSSFNVSADGKLLAV-  317 (406)
Q Consensus       245 ~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~i~~~d~~~~~~-~~~~~-~~~~~i~~~~~sp~~~~l~~-  317 (406)
                      ..+ ..+....+.++.|+|++.      +++++   +.++.|++||+++++. +.... .+...+.+++|+|++++|++ 
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~------~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  285 (402)
T 2aq5_A          212 AEKDRPHEGTRPVHAVFVSEGK------ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLC  285 (402)
T ss_dssp             EEEECSSCSSSCCEEEECSTTE------EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEE
T ss_pred             eeeccCCCCCcceEEEEcCCCc------EEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEE
Confidence            888 555555578999999876      34444   6899999999998654 22222 35577999999999999975 


Q ss_pred             EeCCCcEEEEECCCceE-EEEee-cccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490          318 GTASGDISIIDSSSLQV-RTAVK-KAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       318 ~~~dg~i~i~d~~~~~~-~~~~~-~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~  376 (406)
                      |+.||.|++||+.+++. +..+. ..|...|.+++|+|++.++++  .++.+++|++.+++
T Consensus       286 g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          286 GKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK  344 (402)
T ss_dssp             ETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred             EcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence            55799999999998773 33332 125689999999999998764  56799999998754

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=9.3e-34  Score=260.35  Aligned_cols=255  Identities=11%  Similarity=0.075  Sum_probs=204.4

Q ss_pred             cceeEEecCCCCceEEEEccCC-CeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECC-CCC
Q 015490          104 QPVAELRTDSDLPYRMAIHPHG-DGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDS-EGT  180 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~~-~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~  180 (406)
                      .....+.+|.+.|.+++|+|++ ++|++++ ++.++||++...  ....         .+....+...|.+++|+| +++
T Consensus        64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~---------~~~~~~h~~~v~~~~~~~~~~~  132 (383)
T 3ei3_B           64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ--NKTS---------FIQGMGPGDAITGMKFNQFNTN  132 (383)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTST--TCEE---------EECCCSTTCBEEEEEEETTEEE
T ss_pred             ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCc--ccce---------eeecCCcCCceeEEEeCCCCCC
Confidence            4566889999999999999999 8888887 888899876532  1111         111123668999999999 779


Q ss_pred             EEEEeeCCCeEEEEeCCCcceEeeeeccC---CceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEE
Q 015490          181 IFAAGSENGNLRVFKWPSLEIILNESEAH---ASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFAS  257 (406)
Q Consensus       181 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  257 (406)
                      +|++++.|+.|++||+++ .....+..+.   ..|.+++|+|++++|++++.|+.|++||+ +++....+..+ ...+.+
T Consensus       133 ~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h-~~~v~~  209 (383)
T 3ei3_B          133 QLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLH-KAKVTH  209 (383)
T ss_dssp             EEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECS-SSCEEE
T ss_pred             EEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccC-CCcEEE
Confidence            999999999999999986 4444554444   57999999999999999999999999999 56677766654 457899


Q ss_pred             EEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC----ceEEEEeeecCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCc
Q 015490          258 CRFSPLNNEDYVLYIAAITDRGASIVTWNTTT----WKRIRTKQVVREPVSSFNVSA-DGKLLAVGTASGDISIIDSSSL  332 (406)
Q Consensus       258 ~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~----~~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~i~i~d~~~~  332 (406)
                      ++|+|+++.     ++++++.|+.|++||+++    +..+..+ .|...|.+++|+| ++++|++++.|+.|++||++++
T Consensus       210 ~~~~~~~~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~  283 (383)
T 3ei3_B          210 AEFNPRCDW-----LMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDW  283 (383)
T ss_dssp             EEECSSCTT-----EEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBT
T ss_pred             EEECCCCCC-----EEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCC
Confidence            999999985     456778899999999998    5666666 6889999999999 9999999999999999999987


Q ss_pred             eEEEEeecccc-----------------cceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490          333 QVRTAVKKAHL-----------------GIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       333 ~~~~~~~~~~~-----------------~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~  381 (406)
                      +....+. .|.                 +.+..++|+|++++  +++.|+.|++||+.+++.+..+
T Consensus       284 ~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l  346 (383)
T 3ei3_B          284 SKPDQII-IHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQL  346 (383)
T ss_dssp             TSCSEEE-ECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEE
T ss_pred             ccccccc-cccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeee
Confidence            7665554 332                 23445667777766  7789999999999988765443

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=2.2e-33  Score=255.80  Aligned_cols=258  Identities=14%  Similarity=0.116  Sum_probs=205.6

Q ss_pred             cccceeEEecCCCCceEEEEccC---CCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecc-cccCcEEEEEEC
Q 015490          102 SDQPVAELRTDSDLPYRMAIHPH---GDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQL-ENVGQQLALTFD  176 (406)
Q Consensus       102 ~~~~~~~~~~h~~~v~~~~~sp~---~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s  176 (406)
                      +...+..+.+|.+.|++++|+|+   |.+|++++ ++.+++|+++.....            ....+ .|...|.+++|+
T Consensus        28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~------------~~~~~~~h~~~v~~~~~~   95 (368)
T 3mmy_A           28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT------------IPKAQQMHTGPVLDVCWS   95 (368)
T ss_dssp             TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE------------EEEEEEECSSCEEEEEEC
T ss_pred             CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce------------eEEEeccccCCEEEEEEC
Confidence            34677788999999999999999   58888887 888899887642111            11222 355889999999


Q ss_pred             CCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEE--ccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCC---
Q 015490          177 SEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSF--SPDGKFLVSLGNRGPGRVWDLASSAVATPLAKEN---  251 (406)
Q Consensus       177 ~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~--s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~---  251 (406)
                      |++++|++++.||.|++||+++++... +..|...|.+++|  ++++++|++++.|+.|++||+++++....+..+.   
T Consensus        96 ~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  174 (368)
T 3mmy_A           96 DDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCY  174 (368)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEE
T ss_pred             cCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCce
Confidence            999999999999999999999888765 5667889999999  8999999999999999999999887665554322   


Q ss_pred             -------------------------------------cceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc---e
Q 015490          252 -------------------------------------DELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW---K  291 (406)
Q Consensus       252 -------------------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~---~  291 (406)
                                                           .....++.+.++......  .+++++.++.|++||++..   .
T Consensus       175 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~dg~i~i~~~~~~~~~~  252 (368)
T 3mmy_A          175 CADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPT--GFALGSIEGRVAIHYINPPNPAK  252 (368)
T ss_dssp             EEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEE--EEEEEETTSEEEEEESSCSCHHH
T ss_pred             EEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCC--eEEEecCCCcEEEEecCCCCccc
Confidence                                                 112233444443332111  2566788999999999876   4


Q ss_pred             EEEEeeecCC------------CeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEE
Q 015490          292 RIRTKQVVRE------------PVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALV  359 (406)
Q Consensus       292 ~~~~~~~~~~------------~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  359 (406)
                      ....+..|..            .|.+++|+|++++|++++.||.|++||+.+++.+..+. .|..+|.+++|+|+|++|+
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~  331 (368)
T 3mmy_A          253 DNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE-QLDQPISACCFNHNGNIFA  331 (368)
T ss_dssp             HSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC-CCSSCEEEEEECTTSSCEE
T ss_pred             cceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec-CCCCCceEEEECCCCCeEE
Confidence            5566666654            69999999999999999999999999999999999886 8999999999999999999


Q ss_pred             EEECCCcEEEEEecCC
Q 015490          360 SASMDSSVRVTVIEDK  375 (406)
Q Consensus       360 s~s~dg~i~iw~~~~~  375 (406)
                      +++.|+..+.|++.+.
T Consensus       332 ~~s~d~~~~~~~~~~~  347 (368)
T 3mmy_A          332 YASSYDWSKGHEFYNP  347 (368)
T ss_dssp             EEECCCSTTCGGGCCT
T ss_pred             EEecccccccccccCC
Confidence            9999986666655443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=7.9e-33  Score=259.26  Aligned_cols=289  Identities=11%  Similarity=0.151  Sum_probs=208.9

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCC-----CccccceeEEecCC------------CCceEEEEccCC--CeE
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASN-----SLSDQPVAELRTDS------------DLPYRMAIHPHG--DGI  128 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~-----~~~~~~~~~~~~h~------------~~v~~~~~sp~~--~~l  128 (406)
                      +++++++++..|        .+.++.+.....     .........+.+|.            +.|.+++|+|++  ..+
T Consensus        39 ~g~~la~g~~dg--------~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l  110 (447)
T 3dw8_B           39 SGELLATGDKGG--------RVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQF  110 (447)
T ss_dssp             SSSEEEEEETTS--------EEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEE
T ss_pred             CCCEEEEEcCCC--------eEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceE
Confidence            677777765433        345555443221     11123577889998            899999999998  678


Q ss_pred             EEEe-cCCeEEEEEecccccce-----------------eeccee--------ccceeeec--ccccCcEEEEEECCCCC
Q 015490          129 ICAL-QNSCRLFEWDEVENTEI-----------------RRLGVK--------ISEKVLSQ--LENVGQQLALTFDSEGT  180 (406)
Q Consensus       129 ~~~~-~~~~~i~~~~~~~~~~~-----------------~~~~~~--------~~~~~~~~--~~~~~~v~~~~~s~~g~  180 (406)
                      ++++ |+.+++|++........                 ..+..+        ........  ..|...|.+++|+|+++
T Consensus       111 ~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  190 (447)
T 3dw8_B          111 LLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYE  190 (447)
T ss_dssp             EEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSS
T ss_pred             EEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCC
Confidence            8777 99999998875322100                 000000        00011111  23558899999999999


Q ss_pred             EEEEeeCCCeEEEEeCCCcc-eEe-------eeeccCCceeEEEEccCC-CEEEEEeCCCCEEEEEcCCCee----eeec
Q 015490          181 IFAAGSENGNLRVFKWPSLE-IIL-------NESEAHASVKDLSFSPDG-KFLVSLGNRGPGRVWDLASSAV----ATPL  247 (406)
Q Consensus       181 ~l~~~~~dg~i~vwd~~~~~-~~~-------~~~~~~~~i~~~~~s~~~-~~l~s~s~d~~i~iwd~~~~~~----~~~~  247 (406)
                      +|++| .|+.|++||+++.. ...       .+..|...|.+++|+|++ ++|++++.|+.|++||+++++.    ...+
T Consensus       191 ~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  269 (447)
T 3dw8_B          191 TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLF  269 (447)
T ss_dssp             EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEE
T ss_pred             EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEe
Confidence            99998 79999999998443 333       245677799999999998 9999999999999999998886    5666


Q ss_pred             ccCCc-----------ceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC-ceEEEEeeecCCC-------------
Q 015490          248 AKEND-----------ELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT-WKRIRTKQVVREP-------------  302 (406)
Q Consensus       248 ~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~-------------  302 (406)
                      ..+..           ..+.+++|+|+++.      +++++. +.|++||+++ ++.+..+..|...             
T Consensus       270 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~------l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i  342 (447)
T 3dw8_B          270 EEPEDPSNRSFFSEIISSISDVKFSHSGRY------MMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI  342 (447)
T ss_dssp             CCC-----CCHHHHHTTCEEEEEECTTSSE------EEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred             ccCCCccccccccccCceEEEEEECCCCCE------EEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccc
Confidence            55443           27999999999883      334455 9999999997 7777777777421             


Q ss_pred             --eEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEee-------------------------------cccccceEEE
Q 015490          303 --VSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVK-------------------------------KAHLGIVTAL  349 (406)
Q Consensus       303 --i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------------------------------~~~~~~v~~~  349 (406)
                        +..++|+|++++|++|+.||.|++||+.+++.+....                               ..+...|..+
T Consensus       343 ~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  422 (447)
T 3dw8_B          343 FDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHT  422 (447)
T ss_dssp             GCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEE
T ss_pred             ccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEE
Confidence              3349999999999999999999999999887654211                               0234568899


Q ss_pred             EEcCCCCeEEEEECCCcEEEEEec
Q 015490          350 AFSYDSRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       350 ~~sp~~~~l~s~s~dg~i~iw~~~  373 (406)
                      +|+|++.+|++++.++ +++|.-+
T Consensus       423 ~~~p~~~~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          423 AWHPKENIIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             EECSSSSEEEEECSSC-EEEEECC
T ss_pred             EECCCCCEEEEEecce-eeeeccc
Confidence            9999999999988775 8888643

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.1e-33  Score=255.59  Aligned_cols=250  Identities=12%  Similarity=0.096  Sum_probs=206.1

Q ss_pred             EecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCC-EEEEee
Q 015490          109 LRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGT-IFAAGS  186 (406)
Q Consensus       109 ~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~  186 (406)
                      ..+|.+.|.+++|+|++.+|++++ ++.+++|+++......          .......+...|.+++|+|+++ +|++|+
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~   76 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV----------DLLQSLRYKHPLLCCNFIDNTDLQIYVGT   76 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE----------EEEEEEECSSCEEEEEEEESSSEEEEEEE
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccc----------cceeeeecCCceEEEEECCCCCcEEEEEc
Confidence            458999999999999999999987 8888888877532110          1122234668999999999999 999999


Q ss_pred             CCCeEEEEeC-CCcceEeeeec--cCCceeEEEEccCCCEEEEEeCCCCEEEEEcCC---------CeeeeecccCCcce
Q 015490          187 ENGNLRVFKW-PSLEIILNESE--AHASVKDLSFSPDGKFLVSLGNRGPGRVWDLAS---------SAVATPLAKENDEL  254 (406)
Q Consensus       187 ~dg~i~vwd~-~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~---------~~~~~~~~~~~~~~  254 (406)
                      .||.|++||+ .+++. ..+..  |...|.+++|+| +++|++++.|+.|++||+++         ++.+..+.  +...
T Consensus        77 ~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~  152 (342)
T 1yfq_A           77 VQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK--VKNK  152 (342)
T ss_dssp             TTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS--SCCC
T ss_pred             CCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe--eCCc
Confidence            9999999999 87765 56666  778999999999 99999999999999999987         66666665  4567


Q ss_pred             EEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC-ce--EEEEeeecCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 015490          255 FASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT-WK--RIRTKQVVREPVSSFNVSA-DGKLLAVGTASGDISIIDSS  330 (406)
Q Consensus       255 ~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~-~~--~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~i~i~d~~  330 (406)
                      +.+++|+|++        +++++.++.|++||+++ +.  .......+...+.+++|+| +++++++++.||.|++|+++
T Consensus       153 v~~~~~~~~~--------l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~  224 (342)
T 1yfq_A          153 IFTMDTNSSR--------LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFD  224 (342)
T ss_dssp             EEEEEECSSE--------EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECC
T ss_pred             eEEEEecCCc--------EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEc
Confidence            8899999764        34556789999999988 44  3334445678899999999 99999999999999999998


Q ss_pred             Cc------eEEEEeeccccc---------ceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490          331 SL------QVRTAVKKAHLG---------IVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       331 ~~------~~~~~~~~~~~~---------~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~  381 (406)
                      ..      +....+. .|..         .|.+++|+|++++|++++.||.|++||+.+++.+..+
T Consensus       225 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  289 (342)
T 1yfq_A          225 DQGDDYNSSKRFAFR-CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF  289 (342)
T ss_dssp             TTCCSTTCTTCEEEE-CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred             CCCcccccccceeee-cccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhh
Confidence            76      6666664 5654         9999999999999999999999999999988765443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=8.7e-34  Score=265.78  Aligned_cols=256  Identities=10%  Similarity=0.130  Sum_probs=198.1

Q ss_pred             cCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc-------------CcEEEEEEC
Q 015490          111 TDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-------------GQQLALTFD  176 (406)
Q Consensus       111 ~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~v~~~~~s  176 (406)
                      .|.+.|++++|+|+|++|++|+ ++.++||++..........   ....+....+.+|             ..|.+++|+
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~---~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~  102 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHS---RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL  102 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCC---CCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEEC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCccc---ccceeEecccccccccccccccccccCceEEEEEc
Confidence            4678999999999999999998 8889998877532100000   0011122223233             779999999


Q ss_pred             CCC--CEEEEeeCCCeEEEEeCCCcceE---------------------------------------ee-eeccCCceeE
Q 015490          177 SEG--TIFAAGSENGNLRVFKWPSLEII---------------------------------------LN-ESEAHASVKD  214 (406)
Q Consensus       177 ~~g--~~l~~~~~dg~i~vwd~~~~~~~---------------------------------------~~-~~~~~~~i~~  214 (406)
                      |++  .+|++++.|++|++||+.+++..                                       .. ..+|...|.+
T Consensus       103 ~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  182 (447)
T 3dw8_B          103 PQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS  182 (447)
T ss_dssp             CCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred             CCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence            998  79999999999999998764432                                       11 2457779999


Q ss_pred             EEEccCCCEEEEEeCCCCEEEEEcCC-Ceeeeec------ccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeC
Q 015490          215 LSFSPDGKFLVSLGNRGPGRVWDLAS-SAVATPL------AKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNT  287 (406)
Q Consensus       215 ~~~s~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~  287 (406)
                      ++|+|++++|+++ .|+.|++||+++ ++....+      ...+...+.+++|+|++..     ++++++.|+.|++||+
T Consensus       183 ~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-----~l~s~~~dg~i~iwd~  256 (447)
T 3dw8_B          183 ISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN-----TFVYSSSKGTIRLCDM  256 (447)
T ss_dssp             EEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTT-----EEEEEETTSCEEEEET
T ss_pred             EEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCc-----EEEEEeCCCeEEEEEC
Confidence            9999999999998 799999999984 4343321      2235567999999999843     4667788999999999


Q ss_pred             CCceE----EEEeeecCC------------CeEEEEEcCCCCEEEEEeCCCcEEEEECCC-ceEEEEeecccccc-----
Q 015490          288 TTWKR----IRTKQVVRE------------PVSSFNVSADGKLLAVGTASGDISIIDSSS-LQVRTAVKKAHLGI-----  345 (406)
Q Consensus       288 ~~~~~----~~~~~~~~~------------~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~-----  345 (406)
                      ++++.    ...+..|..            .|.+++|+|++++|++++. +.|++||+++ ++.+..+. +|...     
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~-~~~~~~~~l~  334 (447)
T 3dw8_B          257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQ-VHEYLRSKLC  334 (447)
T ss_dssp             TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEE-SCGGGTTTHH
T ss_pred             cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceee-cccccccccc
Confidence            99876    677777765            8999999999999999998 9999999997 77777775 66532     


Q ss_pred             ----------eEEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490          346 ----------VTALAFSYDSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       346 ----------v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                                +..++|+|++++|++++.||.|++||+.+++.
T Consensus       335 ~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~  376 (447)
T 3dw8_B          335 SLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD  376 (447)
T ss_dssp             HHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred             ccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence                      23499999999999999999999999988765

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=9.5e-34  Score=258.07  Aligned_cols=254  Identities=14%  Similarity=0.217  Sum_probs=205.7

Q ss_pred             EEecCCCCceEEEEccC---C-CeEEEE-ecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCC----
Q 015490          108 ELRTDSDLPYRMAIHPH---G-DGIICA-LQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSE----  178 (406)
Q Consensus       108 ~~~~h~~~v~~~~~sp~---~-~~l~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----  178 (406)
                      ...+|.+.|++++|+|+   + ..++++ +++.+++|++..  ++....+..      .....+...|.+++|+|+    
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~--~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~   84 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHS--QGEIRLLQS------YVDADADENFYTCAWTYDSNTS   84 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECG--GGCEEEEEE------EECSCTTCCEEEEEEEECTTTC
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCC--CcEEEeeee------ccccCCCCcEEEEEeccCCCCC
Confidence            34589999999999984   3 344444 477778877653  222222111      111124578999999998    


Q ss_pred             CCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEcc-CCCEEEEEeCCCCEEEEEcCCCeeeeecc--cCCcceE
Q 015490          179 GTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSP-DGKFLVSLGNRGPGRVWDLASSAVATPLA--KENDELF  255 (406)
Q Consensus       179 g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--~~~~~~~  255 (406)
                      +++|++|+.||.|++||+.+++.+..+..|...|.+++|+| ++++|++++.|+.|++||+++++....+.  ..+...+
T Consensus        85 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v  164 (366)
T 3k26_A           85 HPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEV  164 (366)
T ss_dssp             CEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCE
T ss_pred             CCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCce
Confidence            67999999999999999999999988888888999999999 89999999999999999999999888773  3456679


Q ss_pred             EEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEee----------------------------ecCCCeEEEE
Q 015490          256 ASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQ----------------------------VVREPVSSFN  307 (406)
Q Consensus       256 ~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~----------------------------~~~~~i~~~~  307 (406)
                      .+++|+|++..      +++++.|+.|++||+++++....+.                            .|...|.+++
T Consensus       165 ~~~~~~~~~~~------l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  238 (366)
T 3k26_A          165 LSADYDLLGEK------IMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVR  238 (366)
T ss_dssp             EEEEECTTSSE------EEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEE
T ss_pred             eEEEECCCCCE------EEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEE
Confidence            99999999873      4566779999999999865443332                            3788999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCceE--------------EEEeecccccceEEEEEcCC--CCeEEEEECCCcEEEEE
Q 015490          308 VSADGKLLAVGTASGDISIIDSSSLQV--------------RTAVKKAHLGIVTALAFSYD--SRALVSASMDSSVRVTV  371 (406)
Q Consensus       308 ~sp~~~~l~~~~~dg~i~i~d~~~~~~--------------~~~~~~~~~~~v~~~~~sp~--~~~l~s~s~dg~i~iw~  371 (406)
                      |+  ++++++++.|+.|++||+.++..              +..+. .|...|.+++|+|+  +++|++++.||.|++||
T Consensus       239 ~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd  315 (366)
T 3k26_A          239 WL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD-YSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWD  315 (366)
T ss_dssp             EE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE-CSSCCSSCCCCEECTTSSEEEEECTTSCEEEEE
T ss_pred             Ec--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccc-ccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEE
Confidence            99  77999999999999999987643              56664 78999999999999  99999999999999999


Q ss_pred             ecCCcCC
Q 015490          372 IEDKKKS  378 (406)
Q Consensus       372 ~~~~~~~  378 (406)
                      +.+++..
T Consensus       316 ~~~~~~~  322 (366)
T 3k26_A          316 LEVEDPH  322 (366)
T ss_dssp             CCSSSGG
T ss_pred             CCCCCCc
Confidence            9987643

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=5.1e-32  Score=255.21  Aligned_cols=257  Identities=17%  Similarity=0.203  Sum_probs=213.6

Q ss_pred             EEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccC
Q 015490           91 LSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVG  168 (406)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  168 (406)
                      +..|+...    .+.+..+.+|.+.|.+++|+|++ .+++++ |+.+++|+++.  +            +....+. |..
T Consensus       144 i~vwd~~~----~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~--~------------~~~~~~~~h~~  204 (464)
T 3v7d_B          144 IRVYDSIN----KKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKK--G------------CCTHVFEGHNS  204 (464)
T ss_dssp             EEEEETTT----TEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTT--T------------EEEEEECCCSS
T ss_pred             EEEEECCC----CcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCC--C------------cEEEEECCCCC
Confidence            45556544    34778899999999999999988 777776 88988877652  2            2233333 558


Q ss_pred             cEEEEEEC--CCCCEEEEeeCCCeEEEEeCCCcce-----------------------EeeeeccCCceeEEEEccCCCE
Q 015490          169 QQLALTFD--SEGTIFAAGSENGNLRVFKWPSLEI-----------------------ILNESEAHASVKDLSFSPDGKF  223 (406)
Q Consensus       169 ~v~~~~~s--~~g~~l~~~~~dg~i~vwd~~~~~~-----------------------~~~~~~~~~~i~~~~~s~~~~~  223 (406)
                      .|.+++|+  ++++++++|+.||.|++||++++..                       ...+.+|...|.++  ++++++
T Consensus       205 ~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~  282 (464)
T 3v7d_B          205 TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNI  282 (464)
T ss_dssp             CEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTE
T ss_pred             ccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCE
Confidence            89999998  5789999999999999999987653                       33445566667666  677899


Q ss_pred             EEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCe
Q 015490          224 LVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPV  303 (406)
Q Consensus       224 l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i  303 (406)
                      +++++.|+.|++||+++++.+..+..+ ...+.+++|+|+++.      +++++.|+.|++||+++++.+..+..|...|
T Consensus       283 l~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~------l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v  355 (464)
T 3v7d_B          283 VVSGSYDNTLIVWDVAQMKCLYILSGH-TDRIYSTIYDHERKR------CISASMDTTIRIWDLENGELMYTLQGHTALV  355 (464)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEEETTTTE------EEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEecCC-CCCEEEEEEcCCCCE------EEEEeCCCcEEEEECCCCcEEEEEeCCCCcE
Confidence            999999999999999999998888754 556899999999883      5667789999999999999999999999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCC
Q 015490          304 SSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGG  380 (406)
Q Consensus       304 ~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~  380 (406)
                      .+++|+  +++|++++.||.|++||+.++.......  |...+..++|++++++|++++ ||.|++||+++++.+..
T Consensus       356 ~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~  427 (464)
T 3v7d_B          356 GLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH--HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHA  427 (464)
T ss_dssp             EEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE--CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEES
T ss_pred             EEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec--CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEeh
Confidence            999998  5799999999999999999988776664  777788899999999999988 89999999999987653

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.7e-34  Score=282.26  Aligned_cols=250  Identities=15%  Similarity=0.154  Sum_probs=205.1

Q ss_pred             eEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCC--CCEE
Q 015490          107 AELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSE--GTIF  182 (406)
Q Consensus       107 ~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~--g~~l  182 (406)
                      ..+.+|.+.|++++|+|+++++++++ ++.++||++...+.            .....+. |.+.|.+++|+|+  +++|
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~------------~~~~~l~~h~~~V~~l~~s~~~~~~~l   70 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH------------KLIDTLTGHEGPVWRVDWAHPKFGTIL   70 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE------------EEEEEECCCSSCEEEEEECCTTSCSEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC------------ccceeccCCcCceEEEEecCCCCCCEE
Confidence            46789999999999999999999997 88899988774322            2223333 5588999999988  9999


Q ss_pred             EEeeCCCeEEEEeCCCcc--eEeeeeccCCceeEEEEccC--CCEEEEEeCCCCEEEEEcCCCeee--eecccCCcceEE
Q 015490          183 AAGSENGNLRVFKWPSLE--IILNESEAHASVKDLSFSPD--GKFLVSLGNRGPGRVWDLASSAVA--TPLAKENDELFA  256 (406)
Q Consensus       183 ~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~~--~~~l~s~s~d~~i~iwd~~~~~~~--~~~~~~~~~~~~  256 (406)
                      ++|+.||.|++||+.+++  ....+..|...|++++|+|+  ++.+++++.||.|++||++++...  ..+. .+...+.
T Consensus        71 ~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~-~~~~~v~  149 (753)
T 3jro_A           71 ASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVN  149 (753)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEE-CCSSCEE
T ss_pred             EEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEee-cCCCceE
Confidence            999999999999999886  66667778889999999999  999999999999999999887432  2222 3456799


Q ss_pred             EEEEEcC-------------CCCceEEEEEEEcCCCcEEEEEeCCCc----eEEEEeeecCCCeEEEEEcCC---CCEEE
Q 015490          257 SCRFSPL-------------NNEDYVLYIAAITDRGASIVTWNTTTW----KRIRTKQVVREPVSSFNVSAD---GKLLA  316 (406)
Q Consensus       257 ~~~~~~~-------------~~~~~~l~~~~~~~~~~~i~~~d~~~~----~~~~~~~~~~~~i~~~~~sp~---~~~l~  316 (406)
                      +++|+|.             +.      .+++++.|+.|++||++++    .....+..|...|.+++|+|+   +++|+
T Consensus       150 ~l~~~p~~~~~~~~~~~~~d~~------~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~  223 (753)
T 3jro_A          150 SASWAPATIEEDGEHNGTKESR------KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLA  223 (753)
T ss_dssp             EEEECCCC---------CGGGC------CEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred             EEEecCcccccccccccCCCCC------EEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEE
Confidence            9999994             55      3566678999999999876    566778889999999999999   89999


Q ss_pred             EEeCCCcEEEEECCCce-----EEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490          317 VGTASGDISIIDSSSLQ-----VRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       317 ~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~  376 (406)
                      +++.||.|++||+.+++     ..... ..|...|++++|+|+|++|++++.||.|++|++.++.
T Consensus       224 s~s~Dg~I~iwd~~~~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          224 SVSQDRTCIIWTQDNEQGPWKKTLLKE-EKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             EEESSSCEEEEEESSSSSCCBCCBSSS-SCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred             EEecCCEEEEecCCCCCCcceeEEecc-CCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence            99999999999998864     22222 2588899999999999999999999999999998644

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5e-34  Score=270.40  Aligned_cols=252  Identities=12%  Similarity=0.076  Sum_probs=195.8

Q ss_pred             ceeEEecCCCCceEEEEccCC---------CeEEEEe--------------------cCCeEEEEEecccccceeeccee
Q 015490          105 PVAELRTDSDLPYRMAIHPHG---------DGIICAL--------------------QNSCRLFEWDEVENTEIRRLGVK  155 (406)
Q Consensus       105 ~~~~~~~h~~~v~~~~~sp~~---------~~l~~~~--------------------~~~~~i~~~~~~~~~~~~~~~~~  155 (406)
                      ....+. +.+.|.+|+|+|++         .+|+++.                    |+.++||+++.....        
T Consensus       126 ~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~--------  196 (524)
T 2j04_B          126 RGFIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLH--------  196 (524)
T ss_dssp             CEEEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCC--------
T ss_pred             ceEEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCC--------
Confidence            333444 68899999999987         5666643                    456788887643211        


Q ss_pred             ccceeeecccc-cCcEEEEEECCC------CCEEEEeeCCCeEEEEeCCCcce-----------EeeeeccCCceeEEEE
Q 015490          156 ISEKVLSQLEN-VGQQLALTFDSE------GTIFAAGSENGNLRVFKWPSLEI-----------ILNESEAHASVKDLSF  217 (406)
Q Consensus       156 ~~~~~~~~~~~-~~~v~~~~~s~~------g~~l~~~~~dg~i~vwd~~~~~~-----------~~~~~~~~~~i~~~~~  217 (406)
                        ......+.+ .+.|.+++|+|+      +.+||+++.||+|++||+.++..           ...+.+|...|++++|
T Consensus       197 --~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~  274 (524)
T 2j04_B          197 --CVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDF  274 (524)
T ss_dssp             --EEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEE
T ss_pred             --ceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEe
Confidence              001122334 478999999997      57999999999999999976642           1245567779999999


Q ss_pred             ccCCCEEEEEeCCCCEEEEEcCCCeee-eecccCCcceEEEE--EEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEE
Q 015490          218 SPDGKFLVSLGNRGPGRVWDLASSAVA-TPLAKENDELFASC--RFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIR  294 (406)
Q Consensus       218 s~~~~~l~s~s~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~  294 (406)
                      ++++ .|++|+.||+|++||++++... ..+.. |...|.++  .|+|++..     ++++++.|++|++||+++++...
T Consensus       275 s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~-H~~~V~sv~~~~s~~g~~-----~laS~S~D~tvklWD~~~~~~~~  347 (524)
T 2j04_B          275 LSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQV-HDSYILSVSTAYSDFEDT-----VVSTVAVDGYFYIFNPKDIATTK  347 (524)
T ss_dssp             SSSS-EEEEEETTSEEEEEETTBCSSCSEEEEC-SSSCEEEEEEECCTTSCC-----EEEEEETTSEEEEECGGGHHHHC
T ss_pred             cCCC-eEEEEeCCCEEEEEECCCCCCceEEeec-ccccEEEEEEEcCCCCCe-----EEEEeccCCeEEEEECCCCCccc
Confidence            9864 8999999999999999876433 33444 45668888  56777633     56788899999999999988766


Q ss_pred             EeeecCC--CeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEe
Q 015490          295 TKQVVRE--PVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVI  372 (406)
Q Consensus       295 ~~~~~~~--~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~  372 (406)
                      .+..|..  .+.+++|+|+++.+++++.|++|++||++++..+..+. +|.+.|++++|+|+|++|++|+.|++|++||+
T Consensus       348 ~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~-gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~  426 (524)
T 2j04_B          348 TTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV-SRETTITAIGVSRLHPMVLAGSADGSLIITNA  426 (524)
T ss_dssp             EEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE-ECSSCEEEEECCSSCCBCEEEETTTEEECCBS
T ss_pred             ccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeee-cCCCceEEEEeCCCCCeEEEEECCCEEEEEec
Confidence            6666643  47899999999999999999999999999988877776 79999999999999999999999999999998


Q ss_pred             cCC
Q 015490          373 EDK  375 (406)
Q Consensus       373 ~~~  375 (406)
                      ..+
T Consensus       427 ~~~  429 (524)
T 2j04_B          427 ARR  429 (524)
T ss_dssp             CSS
T ss_pred             hHh
Confidence            653

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.6e-32  Score=247.89  Aligned_cols=261  Identities=12%  Similarity=0.028  Sum_probs=207.4

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCC-eEEEEe-cCCeEEEEE-ecc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGD-GIICAL-QNSCRLFEW-DEV  144 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~~~~-~~~~~i~~~-~~~  144 (406)
                      +++++++++..+        .+.++.++.....   .....+.+|...|.+++|+|+++ +|++++ ++.+++|++ +..
T Consensus        22 ~~~~l~~~~~d~--------~v~iw~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~   90 (342)
T 1yfq_A           22 SKSLLLITSWDG--------SLTVYKFDIQAKN---VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP   90 (342)
T ss_dssp             GGTEEEEEETTS--------EEEEEEEETTTTE---EEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS
T ss_pred             CCCEEEEEcCCC--------eEEEEEeCCCCcc---ccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCC
Confidence            556666664332        3455555443211   23556679999999999999999 898887 888888765 432


Q ss_pred             cccceeecceeccceeeeccc--ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCC---------cceEeeeeccCCcee
Q 015490          145 ENTEIRRLGVKISEKVLSQLE--NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPS---------LEIILNESEAHASVK  213 (406)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~---------~~~~~~~~~~~~~i~  213 (406)
                        .            ......  +...|.+++|+| +++|++++.|+.|++||+++         ++.+..+. +...|.
T Consensus        91 --~------------~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~  154 (342)
T 1yfq_A           91 --S------------FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIF  154 (342)
T ss_dssp             --S------------EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEE
T ss_pred             --c------------eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceE
Confidence              1            111122  558899999999 99999999999999999987         66665554 667999


Q ss_pred             EEEEccCCCEEEEEeCCCCEEEEEcCC-Cee-eeecccCCcceEEEEEEEc-CCCCceEEEEEEEcCCCcEEEEEeCCCc
Q 015490          214 DLSFSPDGKFLVSLGNRGPGRVWDLAS-SAV-ATPLAKENDELFASCRFSP-LNNEDYVLYIAAITDRGASIVTWNTTTW  290 (406)
Q Consensus       214 ~~~~s~~~~~l~s~s~d~~i~iwd~~~-~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~i~~~d~~~~  290 (406)
                      +++|+|++  +++++.|+.|++||+++ +.. .......+...+.+++|+| +++      .+++++.++.|++||++..
T Consensus       155 ~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~------~l~~~~~dg~i~i~~~~~~  226 (342)
T 1yfq_A          155 TMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQE------GYACSSIDGRVAVEFFDDQ  226 (342)
T ss_dssp             EEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGC------EEEEEETTSEEEEEECCTT
T ss_pred             EEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCC------EEEEEecCCcEEEEEEcCC
Confidence            99999987  99999999999999988 543 2223334556789999999 887      3455677999999999876


Q ss_pred             ------eEEEEeeecCC---------CeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeeccc-ccceEEEEEcCC
Q 015490          291 ------KRIRTKQVVRE---------PVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAH-LGIVTALAFSYD  354 (406)
Q Consensus       291 ------~~~~~~~~~~~---------~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~sp~  354 (406)
                            +....+..|..         .|.+++|+|++++|++++.||.|++||+.+++.+..+. +| ..+|.+++  |+
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~h~~~v~~~~--~~  303 (342)
T 1yfq_A          227 GDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA-KFNEDSVVKIA--CS  303 (342)
T ss_dssp             CCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC-CCSSSEEEEEE--EC
T ss_pred             CcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhh-cccCCCceEec--CC
Confidence                  67777877754         89999999999999999999999999999999998886 67 99999999  99


Q ss_pred             CCeEEEEECCCc
Q 015490          355 SRALVSASMDSS  366 (406)
Q Consensus       355 ~~~l~s~s~dg~  366 (406)
                      +++|++++.||.
T Consensus       304 ~~~l~s~s~Dg~  315 (342)
T 1yfq_A          304 DNILCLATSDDT  315 (342)
T ss_dssp             SSEEEEEEECTH
T ss_pred             CCeEEEEecCCc
Confidence            999999999998

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=7e-32  Score=262.93  Aligned_cols=283  Identities=11%  Similarity=0.124  Sum_probs=228.0

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCC-ceEEEEcc--CCCeEEEEe-cCCeEEEEEec
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDL-PYRMAIHP--HGDGIICAL-QNSCRLFEWDE  143 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~sp--~~~~l~~~~-~~~~~i~~~~~  143 (406)
                      ++++++++++ +          .+..|+.....-..+....+.+|.+. |++++|+|  ++++|++++ ++.+++|++..
T Consensus        29 dg~~l~~~~~-~----------~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~   97 (615)
T 1pgu_A           29 TTNAIAYPCG-K----------SAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF   97 (615)
T ss_dssp             TTTEEEEEET-T----------EEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred             CCCEEEEecC-C----------eEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCC
Confidence            6777777642 1          34455554421122578889999999 99999999  999999988 88899988853


Q ss_pred             ccccceeecceeccceeeeccc-ccCcEEEEEECCCCCEEEEeeCC----CeEEEEeCCCcceEeeeeccCCceeEEEEc
Q 015490          144 VENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIFAAGSEN----GNLRVFKWPSLEIILNESEAHASVKDLSFS  218 (406)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s  218 (406)
                      .....  .+    .......+. +...|.+++|+|++++|++++.+    +.|++||  +++....+..|...|.+++|+
T Consensus        98 ~~~~~--~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~  169 (615)
T 1pgu_A           98 DKESN--SV----EVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLK  169 (615)
T ss_dssp             EGGGT--EE----EEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEEC
T ss_pred             Ccccc--cc----cccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEEC
Confidence            21000  00    111222233 45789999999999999999987    6888888  566777888888899999999


Q ss_pred             cCCC-EEEEEeCCCCEEEEEcCCCeeeeecccCCcc--eEEEEEEEcC-CCCceEEEEEEEcCCCcEEEEEeCCCceEEE
Q 015490          219 PDGK-FLVSLGNRGPGRVWDLASSAVATPLAKENDE--LFASCRFSPL-NNEDYVLYIAAITDRGASIVTWNTTTWKRIR  294 (406)
Q Consensus       219 ~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~  294 (406)
                      |+++ .+++++.|+.|++||+.+++....+..+...  .+.+++|+|+ ++      .+++++.++.|++||+++++.+.
T Consensus       170 ~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------~l~~~~~dg~i~vwd~~~~~~~~  243 (615)
T 1pgu_A          170 QSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGE------FVITVGSDRKISCFDGKSGEFLK  243 (615)
T ss_dssp             SSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCC------EEEEEETTCCEEEEETTTCCEEE
T ss_pred             CCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCC------EEEEEeCCCeEEEEECCCCCEeE
Confidence            9998 8999999999999999999998888765431  6899999999 76      35566779999999999999999


Q ss_pred             Ee-e---ecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeeccc----ccceEEEEEcCCCCeEEEEECCCc
Q 015490          295 TK-Q---VVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAH----LGIVTALAFSYDSRALVSASMDSS  366 (406)
Q Consensus       295 ~~-~---~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~v~~~~~sp~~~~l~s~s~dg~  366 (406)
                      .+ .   .|...|.+++|+ ++++|++++.|+.|++||+.+++.+..+. .+    ...+.++.|+ ++.++++++.|+.
T Consensus       244 ~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~  320 (615)
T 1pgu_A          244 YIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWT-LDKQQLGNQQVGVVAT-GNGRIISLSLDGT  320 (615)
T ss_dssp             ECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEE-CCTTCGGGCEEEEEEE-ETTEEEEEETTSC
T ss_pred             EecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEc-CCCCcccCceeEEEeC-CCCeEEEEECCCC
Confidence            88 6   788999999999 99999999999999999999999888886 44    4678888886 8899999999999


Q ss_pred             EEEEEecCCcCC
Q 015490          367 VRVTVIEDKKKS  378 (406)
Q Consensus       367 i~iw~~~~~~~~  378 (406)
                      |++||+.+++.+
T Consensus       321 i~~~d~~~~~~~  332 (615)
T 1pgu_A          321 LNFYELGHDEVL  332 (615)
T ss_dssp             EEEEETTEEEEE
T ss_pred             EEEEECCCCcEE
Confidence            999999876554

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.8e-32  Score=288.06  Aligned_cols=272  Identities=16%  Similarity=0.234  Sum_probs=227.0

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVEN  146 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~  146 (406)
                      +++++++++..|          .+..|+...    .+.+..+.+|.+.|.+++|+|+++++++++ |+.+++|++.  ++
T Consensus       626 ~~~~l~s~~~d~----------~i~vw~~~~----~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~--~~  689 (1249)
T 3sfz_A          626 DGQRIASCGADK----------TLQVFKAET----GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA--TG  689 (1249)
T ss_dssp             TSSEEEEEETTS----------CEEEEETTT----CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT--TC
T ss_pred             CCCEEEEEeCCC----------eEEEEECCC----CCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC--CC
Confidence            677777665433          345556554    347788999999999999999999999987 7777777654  23


Q ss_pred             cceeecceeccceeeeccc-ccCcEEEEEECC--CCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCE
Q 015490          147 TEIRRLGVKISEKVLSQLE-NVGQQLALTFDS--EGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKF  223 (406)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~--~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~  223 (406)
                      +            .+..+. |...|.+++|+|  ++.++++|+.|+.|++||+++++....+.+|...|++++|+|++++
T Consensus       690 ~------------~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~  757 (1249)
T 3sfz_A          690 K------------LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDEL  757 (1249)
T ss_dssp             C------------EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTE
T ss_pred             c------------eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCE
Confidence            2            222333 457899999999  5568999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCEEEEEcCCCeeeeecccC------------CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCce
Q 015490          224 LVSLGNRGPGRVWDLASSAVATPLAKE------------NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK  291 (406)
Q Consensus       224 l~s~s~d~~i~iwd~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~  291 (406)
                      |++++.||.|++||+++++....+...            ....+.+++|+|++..     +++.+  ++.+.+||+.++.
T Consensus       758 l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~-----l~~~~--~~~v~~~d~~~~~  830 (1249)
T 3sfz_A          758 LASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDK-----IIVAA--KNKVLLFDIHTSG  830 (1249)
T ss_dssp             EEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSE-----EEEEE--TTEEEEEETTTCC
T ss_pred             EEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCE-----EEEEc--CCcEEEEEecCCC
Confidence            999999999999999988776654321            1225778999999984     22322  6899999999988


Q ss_pred             EEEEee-ecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEE
Q 015490          292 RIRTKQ-VVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVT  370 (406)
Q Consensus       292 ~~~~~~-~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw  370 (406)
                      ....+. .|...+.+++|+|+++++++++.||.|++||+.++.....+. +|...|.+++|+|+|++|++++.||.|++|
T Consensus       831 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~~l~s~s~dg~v~vw  909 (1249)
T 3sfz_A          831 LLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR-GHLSWVHGVMFSPDGSSFLTASDDQTIRVW  909 (1249)
T ss_dssp             EEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             ceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecC-CCccceEEEEECCCCCEEEEEeCCCeEEEE
Confidence            877776 678899999999999999999999999999999999998886 899999999999999999999999999999


Q ss_pred             EecCC
Q 015490          371 VIEDK  375 (406)
Q Consensus       371 ~~~~~  375 (406)
                      ++.+.
T Consensus       910 ~~~~~  914 (1249)
T 3sfz_A          910 ETKKV  914 (1249)
T ss_dssp             EHHHH
T ss_pred             Ecccc
Confidence            98754

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.6e-33  Score=263.16  Aligned_cols=256  Identities=14%  Similarity=0.141  Sum_probs=197.6

Q ss_pred             ceeEEecCCCCceEEEEccC-CCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECC-CCCE
Q 015490          105 PVAELRTDSDLPYRMAIHPH-GDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDS-EGTI  181 (406)
Q Consensus       105 ~~~~~~~h~~~v~~~~~sp~-~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~  181 (406)
                      ......+|...|+|++|+|. +..|++|+ |+.++||+++.....           .......|.+.|++++|+| ++++
T Consensus       111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~-----------~~~~~~gH~~~V~~l~f~p~~~~~  179 (435)
T 4e54_B          111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP-----------TFIKGIGAGGSITGLKFNPLNTNQ  179 (435)
T ss_dssp             SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-----------EEECCCSSSCCCCEEEECSSCTTE
T ss_pred             ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-----------eEEEccCCCCCEEEEEEeCCCCCE
Confidence            44567889999999999995 56788887 899999876543211           1122234668999999998 6899


Q ss_pred             EEEeeCCCeEEEEeCCCcceEeeeeccC--CceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEE
Q 015490          182 FAAGSENGNLRVFKWPSLEIILNESEAH--ASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCR  259 (406)
Q Consensus       182 l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  259 (406)
                      |++|+.||+|++||++++........+.  ..+.+++|+|++++|++++.||.|++||++. +.+..+.. +...|.+++
T Consensus       180 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~-h~~~v~~v~  257 (435)
T 4e54_B          180 FYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRM-HKKKVTHVA  257 (435)
T ss_dssp             EEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBC-CSSCEEEEE
T ss_pred             EEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEec-ccceEEeee
Confidence            9999999999999998765433322222  2678999999999999999999999999964 45555654 455789999


Q ss_pred             EEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEE---eeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEE
Q 015490          260 FSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRT---KQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRT  336 (406)
Q Consensus       260 ~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~---~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~  336 (406)
                      |+|++..     ++++++.|+.|++||+++.+....   ...|...|.+++|+|+|++|++++.||.|++||+.++....
T Consensus       258 ~~p~~~~-----~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~  332 (435)
T 4e54_B          258 LNPCCDW-----FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPL  332 (435)
T ss_dssp             ECTTCSS-----EEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEE
T ss_pred             ecCCCce-----EEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccce
Confidence            9999986     566778899999999987654332   35678899999999999999999999999999999987766


Q ss_pred             Eeeccccc------ceEEEEEcCCCCeEEEEE------------CCCcEEEEEecCCcCCC
Q 015490          337 AVKKAHLG------IVTALAFSYDSRALVSAS------------MDSSVRVTVIEDKKKSG  379 (406)
Q Consensus       337 ~~~~~~~~------~v~~~~~sp~~~~l~s~s------------~dg~i~iw~~~~~~~~~  379 (406)
                      .+. .|..      .+..+.|+|++.++++++            .++.|++||+.+++.+.
T Consensus       333 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~  392 (435)
T 4e54_B          333 GLI-PHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMC  392 (435)
T ss_dssp             EEC-CCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEE
T ss_pred             EEe-cccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEE
Confidence            654 3432      234567788777777664            23579999999887654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-32  Score=242.07  Aligned_cols=246  Identities=17%  Similarity=0.194  Sum_probs=205.1

Q ss_pred             cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeec-ccccCcEEEEEECCCCCE
Q 015490          104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQ-LENVGQQLALTFDSEGTI  181 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~  181 (406)
                      +....+.+|.+.|.+++| |++.+|++++ ++.+++|+++.  ..            .... ..+...|.+++|+|++++
T Consensus         9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~--~~------------~~~~~~~~~~~v~~~~~~~~~~~   73 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDD--QW------------LGTVVYTGQGFLNSVCYDSEKEL   73 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESS--SE------------EEEEEEECSSCEEEEEEETTTTE
T ss_pred             HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCC--CE------------EEEEeecCCccEEEEEECCCCCE
Confidence            577889999999999999 9999999988 88888887743  21            1122 234688999999999999


Q ss_pred             EEEeeCCCeEEEEeCCCc---ceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEE
Q 015490          182 FAAGSENGNLRVFKWPSL---EIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASC  258 (406)
Q Consensus       182 l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  258 (406)
                      |++++.||.|++|++...   +....+..|...|.+++|  +++++++++.|+.|++||  .++....+..+ ...+.++
T Consensus        74 l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~-~~~v~~~  148 (313)
T 3odt_A           74 LLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAH-NASVWDA  148 (313)
T ss_dssp             EEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECC-SSCEEEE
T ss_pred             EEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccC-CCceeEE
Confidence            999999999999998654   456667778889999999  577999999999999999  56666666544 5568899


Q ss_pred             EEEc-CCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeee-cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEE
Q 015490          259 RFSP-LNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQV-VREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRT  336 (406)
Q Consensus       259 ~~~~-~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~  336 (406)
                      .|.| ++.      .+++++.++.|++||  ..+....+.. +...+.+++|+|++. +++++.||.|++||+++++.+.
T Consensus       149 ~~~~~~~~------~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~  219 (313)
T 3odt_A          149 KVVSFSEN------KFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLR  219 (313)
T ss_dssp             EEEETTTT------EEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEE
T ss_pred             EEccCCCC------EEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhh
Confidence            9998 555      355667899999999  4456666666 788999999999998 8999999999999999999999


Q ss_pred             EeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCC
Q 015490          337 AVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGG  380 (406)
Q Consensus       337 ~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~  380 (406)
                      .+. .|...|.+++|+|++ .|++++.||.|++||+++++.+..
T Consensus       220 ~~~-~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~  261 (313)
T 3odt_A          220 TYE-GHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQV  261 (313)
T ss_dssp             EEE-CCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEE
T ss_pred             hhh-cCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEE
Confidence            886 899999999999999 689999999999999998876543

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=6.4e-32  Score=245.38  Aligned_cols=244  Identities=12%  Similarity=0.101  Sum_probs=189.1

Q ss_pred             cceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEE-
Q 015490          104 QPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIF-  182 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-  182 (406)
                      +++.....|.+.|.+++|+|||++|++|+++.++||+.+..  ...            ... ....+..+++.++++.+ 
T Consensus        10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~--~~~------------~~~-~~~~~~~~~~~~~~~~~~   74 (355)
T 3vu4_A           10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPV--AHI------------MSQ-EMRHLSKVRMLHRTNYVA   74 (355)
T ss_dssp             ---------CCCCCEEEECTTSSEEEEECSSEEEEEEETTE--EEE------------EEE-ECSCCCEEEECTTSSEEE
T ss_pred             CCccccccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCc--cee------------eee-ecCCeEEEEEcCCCCEEE
Confidence            35667789999999999999999999998777888876531  111            111 12247778899888877 


Q ss_pred             EEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCC-eeeeecccCCcceEEEEEEE
Q 015490          183 AAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASS-AVATPLAKENDELFASCRFS  261 (406)
Q Consensus       183 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~  261 (406)
                      ++++.|++|++||+.+++.+..+. +...|.+++|+++.  ++++ .|+.|++||+.++ +.+..+..    ....++++
T Consensus        75 ~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~----~~~~~~~s  146 (355)
T 3vu4_A           75 FVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR----FGGVCEFS  146 (355)
T ss_dssp             EECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE----EEEEEEEE
T ss_pred             EEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc----CCceEEEE
Confidence            567888999999999999887765 56689999998864  4444 3779999999988 66665543    34456677


Q ss_pred             cCCCCceEEEEEEEcCCCcEEEEEeCCCce----------------EEEEeeecCCCeEEEEEcCCCCEEEEEeCCCc-E
Q 015490          262 PLNNEDYVLYIAAITDRGASIVTWNTTTWK----------------RIRTKQVVREPVSSFNVSADGKLLAVGTASGD-I  324 (406)
Q Consensus       262 ~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~----------------~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~-i  324 (406)
                      +  ..    +.++++..++.|++||+++++                .+..+..|...|.+++|+|+|++|++|+.|++ |
T Consensus       147 ~--~~----la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v  220 (355)
T 3vu4_A          147 N--GL----LVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTII  220 (355)
T ss_dssp             T--TE----EEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEE
T ss_pred             c--cE----EEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEE
Confidence            7  21    233337899999999999865                16778899999999999999999999999998 9


Q ss_pred             EEEECCCceEEEEeecc-cccceEEEEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490          325 SIIDSSSLQVRTAVKKA-HLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       325 ~i~d~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~  376 (406)
                      ++||+++++.+..+..+ |...|.+++|+|++++|++++.|++|++||++++.
T Consensus       221 ~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          221 RVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             EEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred             EEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence            99999999999998645 99999999999999999999999999999998764

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.5e-32  Score=288.53  Aligned_cols=291  Identities=18%  Similarity=0.211  Sum_probs=236.5

Q ss_pred             CCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEeccc
Q 015490           67 RRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVE  145 (406)
Q Consensus        67 ~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~  145 (406)
                      ++++.+++++..|          .+..|+...    ...+..+.+|...|.+++|+|+++++++++ ++.+++|+.....
T Consensus       850 p~~~~l~~~~~dg----------~v~vwd~~~----~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~  915 (1249)
T 3sfz_A          850 PYDHLAVIALSQY----------CVELWNIDS----RLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVC  915 (1249)
T ss_dssp             SSTTEEEEECSSS----------CEEEEETTT----TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHH
T ss_pred             CCCCEEEEEeCCC----------eEEEEEcCC----CceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccc
Confidence            3666766664433          244555544    347788999999999999999999999988 8899998754311


Q ss_pred             ccceee----------------ccee--------ccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcce
Q 015490          146 NTEIRR----------------LGVK--------ISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEI  201 (406)
Q Consensus       146 ~~~~~~----------------~~~~--------~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~  201 (406)
                      ......                ....        ..............+.+++|+|+++++++|+.+|.|++||+.+++.
T Consensus       916 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~  995 (1249)
T 3sfz_A          916 KNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRV  995 (1249)
T ss_dssp             SCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSC
T ss_pred             eeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCce
Confidence            100000                0000        0000000112345799999999999999999999999999999998


Q ss_pred             EeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcE
Q 015490          202 ILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGAS  281 (406)
Q Consensus       202 ~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  281 (406)
                      ...+..|...|++++|+|++++|++++.|+.|++||+.+++.....  .+...+.++.|+|++.       +++++.++.
T Consensus       996 ~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~v~~~~~~~~~~-------l~~~~~dg~ 1066 (1249)
T 3sfz_A          996 FSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ--AHQETVKDFRLLQDSR-------LLSWSFDGT 1066 (1249)
T ss_dssp             EEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCB--CCSSCEEEEEECSSSE-------EEEEESSSE
T ss_pred             eeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEe--cCCCcEEEEEEcCCCc-------EEEEECCCc
Confidence            8888888889999999999999999999999999999998876533  4556788999999764       345567999


Q ss_pred             EEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEE
Q 015490          282 IVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSA  361 (406)
Q Consensus       282 i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~  361 (406)
                      |++||+.+++....+..|...|.+++|+|+++++++++.|+.|++||+.+++.+..+. +|...|++++|+|+|++|+++
T Consensus      1067 v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~-~h~~~v~~~~~s~dg~~lat~ 1145 (1249)
T 3sfz_A         1067 VKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK-GHNGCVRCSAFSLDGILLATG 1145 (1249)
T ss_dssp             EEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCC-CCSSCEEEEEECSSSSEEEEE
T ss_pred             EEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeec-cCCCcEEEEEECCCCCEEEEE
Confidence            9999999999999999999999999999999999999999999999999999888885 899999999999999999999


Q ss_pred             ECCCcEEEEEecCCcCCCCc
Q 015490          362 SMDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       362 s~dg~i~iw~~~~~~~~~~~  381 (406)
                      +.||.|++||+.+++.+..+
T Consensus      1146 ~~dg~i~vwd~~~~~~~~~~ 1165 (1249)
T 3sfz_A         1146 DDNGEIRIWNVSDGQLLHSC 1165 (1249)
T ss_dssp             ETTSCCCEEESSSSCCCCCC
T ss_pred             eCCCEEEEEECCCCceEEEe
Confidence            99999999999999877654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.4e-32  Score=266.23  Aligned_cols=252  Identities=17%  Similarity=0.254  Sum_probs=213.9

Q ss_pred             cCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeeccc-ccCc-EEEEEECC--CCCEEEEee
Q 015490          111 TDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQ-QLALTFDS--EGTIFAAGS  186 (406)
Q Consensus       111 ~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-v~~~~~s~--~g~~l~~~~  186 (406)
                      .|.+.|.+++|+|++++|++++++.+.+|+++.  +..        ..+....+. |... |.+++|+|  ++++|++|+
T Consensus        16 ~~~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~--~~~--------~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~   85 (615)
T 1pgu_A           16 TQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDD--GDS--------KVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGD   85 (615)
T ss_dssp             CCTTCCCCCEEETTTTEEEEEETTEEEEEECCS--SCC--------SSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEE
T ss_pred             CccCceeEEEECCCCCEEEEecCCeEEEEECCC--CCC--------ccccceEEecCCCceEEEEEECcCCCCCEEEEec
Confidence            688999999999999999999988888877652  200        001222333 4578 99999999  999999999


Q ss_pred             CCCeEEEEeCCCc--------ceEeeeeccCCceeEEEEccCCCEEEEEeCC----CCEEEEEcCCCeeeeecccCCcce
Q 015490          187 ENGNLRVFKWPSL--------EIILNESEAHASVKDLSFSPDGKFLVSLGNR----GPGRVWDLASSAVATPLAKENDEL  254 (406)
Q Consensus       187 ~dg~i~vwd~~~~--------~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d----~~i~iwd~~~~~~~~~~~~~~~~~  254 (406)
                      .||.|++||+.++        +....+..|...|.+++|+|++++|++++.+    +.|++||  .++....+.. +...
T Consensus        86 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~-~~~~  162 (615)
T 1pgu_A           86 ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSG-HSQR  162 (615)
T ss_dssp             TTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCS-CSSC
T ss_pred             CCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeec-CCcc
Confidence            9999999999754        5666677788899999999999999999987    6788888  5666777765 4557


Q ss_pred             EEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCC---CeEEEEEcCC-CCEEEEEeCCCcEEEEECC
Q 015490          255 FASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVRE---PVSSFNVSAD-GKLLAVGTASGDISIIDSS  330 (406)
Q Consensus       255 ~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---~i~~~~~sp~-~~~l~~~~~dg~i~i~d~~  330 (406)
                      +.+++|+|+++.     .+++++.++.|++||..+++.+..+..|..   .|.+++|+|+ +++|++++.||.|++||+.
T Consensus       163 v~~~~~~~~~~~-----~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~  237 (615)
T 1pgu_A          163 INACHLKQSRPM-----RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK  237 (615)
T ss_dssp             EEEEEECSSSSC-----EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT
T ss_pred             EEEEEECCCCCc-----EEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECC
Confidence            899999999985     456678899999999999999999999988   9999999999 9999999999999999999


Q ss_pred             CceEEEEeec---ccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490          331 SLQVRTAVKK---AHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       331 ~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~  381 (406)
                      +++.+..+..   .|...|.+++|+ ++++|++++.|+.|++||+++++.+..+
T Consensus       238 ~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~  290 (615)
T 1pgu_A          238 SGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKW  290 (615)
T ss_dssp             TCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             CCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEE
Confidence            9999888844   699999999999 9999999999999999999988765443

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.6e-31  Score=251.85  Aligned_cols=244  Identities=19%  Similarity=0.223  Sum_probs=203.9

Q ss_pred             ceeEEecCCCCc-eEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCCE
Q 015490          105 PVAELRTDSDLP-YRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTI  181 (406)
Q Consensus       105 ~~~~~~~h~~~v-~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~  181 (406)
                      ....+.+|...| .++.+  ++.++++++ |+.+++|+...  +            +.+..+. |.+.|.+++|++++ +
T Consensus       113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~--~------------~~~~~~~~h~~~V~~l~~~~~~-~  175 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSIN--K------------KFLLQLSGHDGGVWALKYAHGG-I  175 (464)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTT--T------------EEEEEECCCSSCEEEEEECSTT-E
T ss_pred             ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCC--C------------cEEEEEeCCCcCEEEEEEcCCC-E
Confidence            456889999886 55555  567888887 88888876542  2            2333333 55899999999988 9


Q ss_pred             EEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEc--cCCCEEEEEeCCCCEEEEEcCCCeeee--------------
Q 015490          182 FAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFS--PDGKFLVSLGNRGPGRVWDLASSAVAT--------------  245 (406)
Q Consensus       182 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s--~~~~~l~s~s~d~~i~iwd~~~~~~~~--------------  245 (406)
                      +++|+.||+|++||+++++....+..|...|.+++|+  ++++++++++.|+.|++||++++....              
T Consensus       176 l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~  255 (464)
T 3v7d_B          176 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHT  255 (464)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESC
T ss_pred             EEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeec
Confidence            9999999999999999999998888888899999998  577899999999999999998765332              


Q ss_pred             ---------ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEE
Q 015490          246 ---------PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLA  316 (406)
Q Consensus       246 ---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~  316 (406)
                               .+. .+...+.++  +++++      .+++++.|+.|++||+++++.+..+..|...|.+++|+|++++++
T Consensus       256 ~~~~~~~~~~~~-~~~~~v~~~--~~~~~------~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  326 (464)
T 3v7d_B          256 PEENPYFVGVLR-GHMASVRTV--SGHGN------IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI  326 (464)
T ss_dssp             GGGCTTEEEEEC-CCSSCEEEE--EEETT------EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEE
T ss_pred             cCCCeEEEEEcc-CccceEEEE--cCCCC------EEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEE
Confidence                     222 233344444  56666      356667899999999999999999999999999999999999999


Q ss_pred             EEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490          317 VGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       317 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      +|+.||.|++||+++++.+..+. +|...|.++.|+  +.+|++++.||.|++||+.+++.
T Consensus       327 sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~  384 (464)
T 3v7d_B          327 SASMDTTIRIWDLENGELMYTLQ-GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSR  384 (464)
T ss_dssp             EEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCE
T ss_pred             EEeCCCcEEEEECCCCcEEEEEe-CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCce
Confidence            99999999999999999999986 899999999997  57999999999999999988764

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=4.4e-32  Score=242.83  Aligned_cols=209  Identities=16%  Similarity=0.176  Sum_probs=183.4

Q ss_pred             cccc-cCcEEEEEECCCC-CEEEEeeCCCeEEEEeCCC-----cceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEE
Q 015490          163 QLEN-VGQQLALTFDSEG-TIFAAGSENGNLRVFKWPS-----LEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRV  235 (406)
Q Consensus       163 ~~~~-~~~v~~~~~s~~g-~~l~~~~~dg~i~vwd~~~-----~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~i  235 (406)
                      ++.+ .+.|.+++|+|++ ++|++|+.|++|++|++..     +..+..+.+|...|.+++|+|++++|++++.|++|++
T Consensus        12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~   91 (319)
T 3frx_A           12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL   91 (319)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEE
Confidence            3444 4889999999965 8999999999999999864     2345667788889999999999999999999999999


Q ss_pred             EEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCC----
Q 015490          236 WDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSAD----  311 (406)
Q Consensus       236 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~----  311 (406)
                      ||+++++....+..| ...+.+++|+|++.      .+++++.|+.|++||++. +.+..+..|...+.++.|+|.    
T Consensus        92 wd~~~~~~~~~~~~h-~~~v~~~~~~~~~~------~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~  163 (319)
T 3frx_A           92 WDVATGETYQRFVGH-KSDVMSVDIDKKAS------MIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKAD  163 (319)
T ss_dssp             EETTTTEEEEEEECC-SSCEEEEEECTTSC------EEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC----
T ss_pred             EECCCCCeeEEEccC-CCcEEEEEEcCCCC------EEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCCCC
Confidence            999999998888765 45688999999987      456778899999999975 567788889999999999995    


Q ss_pred             --CCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCC
Q 015490          312 --GKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGG  380 (406)
Q Consensus       312 --~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~  380 (406)
                        +..+++++.|+.|++||+++.+....+. +|...|.+++|+|+|++|++++.||+|++||+.+++.+..
T Consensus       164 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~  233 (319)
T 3frx_A          164 DDSVTIISAGNDKMVKAWNLNQFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT  233 (319)
T ss_dssp             --CCEEEEEETTSCEEEEETTTTEEEEEEC-CCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE
T ss_pred             CCccEEEEEeCCCEEEEEECCcchhheeec-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence              4589999999999999999999888885 8999999999999999999999999999999998775443

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=1.5e-31  Score=233.44  Aligned_cols=266  Identities=12%  Similarity=0.071  Sum_probs=191.9

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceecc----ceeeeccc
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKIS----EKVLSQLE  165 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~  165 (406)
                      .+..|+.... ++-+.+.++.+|+.+|..+.+.||...|++..=+.+.+-....        +...+.    .+.+..-.
T Consensus        64 ~v~lw~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~s--------la~spd~~~~~~~l~s~g  134 (356)
T 2w18_A           64 VVSLWKALDA-WQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRA--------LFCSSDDESEKQVLLKSG  134 (356)
T ss_dssp             EEEEEEESSS-SBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEE--------ECC------CCEEEEEEE
T ss_pred             eEEEcccCCC-ccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEE--------EEECCCccccccEEEeCC
Confidence            4556666552 4447899999999999999999998877776644333222211        111111    11111111


Q ss_pred             ccCcEEEEEECCCCCEEEEee--CCCeEEEEeC-CCcceEeeeeccCCceeEEEEcc---CCCEEEEEeCCCCEEEEEcC
Q 015490          166 NVGQQLALTFDSEGTIFAAGS--ENGNLRVFKW-PSLEIILNESEAHASVKDLSFSP---DGKFLVSLGNRGPGRVWDLA  239 (406)
Q Consensus       166 ~~~~v~~~~~s~~g~~l~~~~--~dg~i~vwd~-~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~s~s~d~~i~iwd~~  239 (406)
                      +...+..+   ++++++.+++  .|+.|++|++ .+++.+..+..|...++.++|++   ++..|++++.|++|+|||++
T Consensus       135 ~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~  211 (356)
T 2w18_A          135 NIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLK  211 (356)
T ss_dssp             EEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETT
T ss_pred             CeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECC
Confidence            12233333   5677666643  5999999999 55888888888888999999999   77999999999999999999


Q ss_pred             CCeeeeecccCCc--ceEEEEEEEcCCCCceEEE---------EEEEcCCCcEEEEEeCCCceEEEEee-----ecCCCe
Q 015490          240 SSAVATPLAKEND--ELFASCRFSPLNNEDYVLY---------IAAITDRGASIVTWNTTTWKRIRTKQ-----VVREPV  303 (406)
Q Consensus       240 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~---------~~~~~~~~~~i~~~d~~~~~~~~~~~-----~~~~~i  303 (406)
                      ++++++.+..++.  ..+.+++|+|++..   +.         .+++++.|++|++||..+++.+..+.     +|...+
T Consensus       212 TGk~l~tL~g~~~~v~~v~~vafSpdG~~---lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~  288 (356)
T 2w18_A          212 TGQLLKKMHIDDSYQASVCHKAYSEMGLL---FIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRF  288 (356)
T ss_dssp             TCCEEEEEECCC---CCCEEEEEEETTEE---EEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCE
T ss_pred             CCcEEEEEcCCCcceeeeEEEEECCCCCE---EEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCccee
Confidence            9999999875432  35667899999863   11         13678899999999999999877652     444444


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceE-EEEEcCCCCeEEEEECCCcEEEEEec
Q 015490          304 SSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVT-ALAFSYDSRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       304 ~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~s~s~dg~i~iw~~~  373 (406)
                      .+..++  +.++++++.|++|+|||+.+++.+.++. +|...+. .++|+|||++|++|+.|++|+|||+.
T Consensus       289 lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~-gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~~  356 (356)
T 2w18_A          289 LEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLP-PVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS  356 (356)
T ss_dssp             EEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEEC-CC--CCCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred             EccccC--CCEEEEEcCCCcEEEEECCCCcEEEEec-CCCCCeEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence            444444  8899999999999999999999999986 7877655 68999999999999999999999963

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-30  Score=244.49  Aligned_cols=247  Identities=12%  Similarity=0.089  Sum_probs=197.8

Q ss_pred             ecCCCCceEEEEccCCCeE-EEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeC
Q 015490          110 RTDSDLPYRMAIHPHGDGI-ICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE  187 (406)
Q Consensus       110 ~~h~~~v~~~~~sp~~~~l-~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  187 (406)
                      .+|.+.|.+++|+|++++| ++++ ++.++||++....++....+         ....+...|.+++|+|++++|++|+.
T Consensus        99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~---------~~~~~~~~v~~~~~sp~~~~l~~~~~  169 (450)
T 2vdu_B           99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLR---------KRFCFSKRPNAISIAEDDTTVIIADK  169 (450)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEE---------EEEECSSCEEEEEECTTSSEEEEEET
T ss_pred             CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeee---------ecccCCCCceEEEEcCCCCEEEEEeC
Confidence            3567789999999999997 5665 88899988763233322221         11234578999999999999999999


Q ss_pred             CCeEEEEeCCCcceEe----eeeccCCceeEEEEccC---CCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEE
Q 015490          188 NGNLRVFKWPSLEIIL----NESEAHASVKDLSFSPD---GKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRF  260 (406)
Q Consensus       188 dg~i~vwd~~~~~~~~----~~~~~~~~i~~~~~s~~---~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  260 (406)
                      +|.|++|++.+++...    .+.+|...|++++|+|+   +++|++++.|+.|++||+++++.+..+...+...+.+++|
T Consensus       170 ~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~  249 (450)
T 2vdu_B          170 FGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICC  249 (450)
T ss_dssp             TSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEE
T ss_pred             CCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEE
Confidence            9999999998776543    66778889999999999   9999999999999999999998887755556678999999


Q ss_pred             EcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeec-------------------------CCCeEEEEEcCCCCEE
Q 015490          261 SPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVV-------------------------REPVSSFNVSADGKLL  315 (406)
Q Consensus       261 ~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-------------------------~~~i~~~~~sp~~~~l  315 (406)
                      + +++      .+++++.|+.|++||+++++.+..+..+                         ...+.+++|+|++++|
T Consensus       250 s-d~~------~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l  322 (450)
T 2vdu_B          250 G-KDY------LLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFV  322 (450)
T ss_dssp             C-STT------EEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEE
T ss_pred             C-CCC------EEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEE
Confidence            9 777      3456678999999999999988887632                         3578999999999999


Q ss_pred             EEEe-CCCcEEEEEC--CCc---eEEEEeecccccceEEEEEcCCCCeEEEE-EC------CCcEEEEEecCC
Q 015490          316 AVGT-ASGDISIIDS--SSL---QVRTAVKKAHLGIVTALAFSYDSRALVSA-SM------DSSVRVTVIEDK  375 (406)
Q Consensus       316 ~~~~-~dg~i~i~d~--~~~---~~~~~~~~~~~~~v~~~~~sp~~~~l~s~-s~------dg~i~iw~~~~~  375 (406)
                      ++++ .++.|++|++  .++   +.+..+. .| ..|.+++|+|++ .+++. +.      +..|.+|.+...
T Consensus       323 ~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~-~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~~~~~~  392 (450)
T 2vdu_B          323 AFFVEATKCIIILEMSEKQKGDLALKQIIT-FP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFIEYNLN  392 (450)
T ss_dssp             EEEETTCSEEEEEEECSSSTTCEEEEEEEE-CS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred             EEEECCCCeEEEEEeccCCCCceeeccEec-cC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEEEEEcC
Confidence            9999 8999999999  555   6666665 56 889999999964 44444 32      556899988654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.8e-31  Score=249.32  Aligned_cols=264  Identities=18%  Similarity=0.236  Sum_probs=209.7

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVEN  146 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~  146 (406)
                      +++.+++++..|          .+..|+...    .+.+..+.+|.+.|.+++|  ++..+++++ |+.+++|++..  +
T Consensus       142 d~~~l~~g~~dg----------~i~iwd~~~----~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~--~  203 (435)
T 1p22_A          142 DDQKIVSGLRDN----------TIKIWDKNT----LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT--G  203 (435)
T ss_dssp             CSSEEEEEESSS----------CEEEEESSS----CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS--C
T ss_pred             CCCEEEEEeCCC----------eEEEEeCCC----CeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC--C
Confidence            566666654433          344555544    3467889999999999999  778899887 88888887653  2


Q ss_pred             cceeecceeccceeeeccc-ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceE---eeeeccCCceeEEEEccCCC
Q 015490          147 TEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEII---LNESEAHASVKDLSFSPDGK  222 (406)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~i~~~~~s~~~~  222 (406)
                      +            .+..+. +...|.+++|++  .++++|+.||.|++||+.++...   ..+.+|...|.+++|  +++
T Consensus       204 ~------------~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~  267 (435)
T 1p22_A          204 E------------MLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDK  267 (435)
T ss_dssp             C------------EEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETT
T ss_pred             c------------EEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCC
Confidence            2            222333 457899999974  59999999999999999887654   556677779999999  688


Q ss_pred             EEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCC
Q 015490          223 FLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREP  302 (406)
Q Consensus       223 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~  302 (406)
                      ++++++.|+.|++||+++++.+..+..+ ...+.++.|+  +.      .+++++.|+.|++||+++++.+..+..|...
T Consensus       268 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~--~~------~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~  338 (435)
T 1p22_A          268 YIVSASGDRTIKVWNTSTCEFVRTLNGH-KRGIACLQYR--DR------LVVSGSSDNTIRLWDIECGACLRVLEGHEEL  338 (435)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEEE--TT------EEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred             EEEEEeCCCeEEEEECCcCcEEEEEcCC-CCcEEEEEeC--CC------EEEEEeCCCeEEEEECCCCCEEEEEeCCcCc
Confidence            9999999999999999999998888754 4467788885  33      3566678999999999999999999999999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCce---------EEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490          303 VSSFNVSADGKLLAVGTASGDISIIDSSSLQ---------VRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       303 i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~  373 (406)
                      |.+++|  ++++|++|+.||.|++||+.++.         .+..+. +|.+.|.+++|  ++++|++++.||+|++||+.
T Consensus       339 v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~  413 (435)
T 1p22_A          339 VRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV-EHSGRVFRLQF--DEFQIVSSSHDDTILIWDFL  413 (435)
T ss_dssp             EEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC-CCSSCCCCEEE--CSSCEEECCSSSEEEEEC--
T ss_pred             EEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeecc-CCCCCeEEEEe--CCCEEEEEeCCCEEEEEECC
Confidence            999999  68899999999999999997665         677775 89999999999  78899999999999999998


Q ss_pred             CCcCCC
Q 015490          374 DKKKSG  379 (406)
Q Consensus       374 ~~~~~~  379 (406)
                      +.....
T Consensus       414 ~~~~~~  419 (435)
T 1p22_A          414 NDPAAQ  419 (435)
T ss_dssp             ------
T ss_pred             CCCCcc
Confidence            876543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.8e-31  Score=246.82  Aligned_cols=248  Identities=17%  Similarity=0.201  Sum_probs=200.2

Q ss_pred             CCceEEEEccCCCeEEEE-e-cCCeEEEEEecccccceeecceeccceeeecc-cccCcEEEEEECC-CCCEEEEeeCCC
Q 015490          114 DLPYRMAIHPHGDGIICA-L-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQL-ENVGQQLALTFDS-EGTIFAAGSENG  189 (406)
Q Consensus       114 ~~v~~~~~sp~~~~l~~~-~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~-~g~~l~~~~~dg  189 (406)
                      .....++++|+...++++ + ++.++||+++... . .        ......+ .|.+.|.+++|+| ++++|++|+.||
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~-~-~--------~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg  104 (402)
T 2aq5_A           35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTG-R-V--------DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDC  104 (402)
T ss_dssp             CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCE-E-C--------CTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTS
T ss_pred             cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCC-C-C--------CCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCC
Confidence            344568899987766653 3 7888887764321 1 0        0112223 3558899999999 999999999999


Q ss_pred             eEEEEeCCCc-------ceEeeeeccCCceeEEEEccCC-CEEEEEeCCCCEEEEEcCCCeeeeecc-cCCcceEEEEEE
Q 015490          190 NLRVFKWPSL-------EIILNESEAHASVKDLSFSPDG-KFLVSLGNRGPGRVWDLASSAVATPLA-KENDELFASCRF  260 (406)
Q Consensus       190 ~i~vwd~~~~-------~~~~~~~~~~~~i~~~~~s~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~  260 (406)
                      .|++||+.++       +.+..+.+|...|.+++|+|++ ++|++++.|+.|++||+++++....+. ..+...+.+++|
T Consensus       105 ~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~  184 (402)
T 2aq5_A          105 TVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDW  184 (402)
T ss_dssp             EEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEE
T ss_pred             eEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEE
Confidence            9999999887       5567778888899999999998 699999999999999999999988884 345667999999


Q ss_pred             EcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEe-eecCCC-eEEEEEcCCCCEEEEE---eCCCcEEEEECCCceE-
Q 015490          261 SPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTK-QVVREP-VSSFNVSADGKLLAVG---TASGDISIIDSSSLQV-  334 (406)
Q Consensus       261 ~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~-i~~~~~sp~~~~l~~~---~~dg~i~i~d~~~~~~-  334 (406)
                      +|++..      +++++.|+.|++||+++++.+..+ ..|.+. +.++.|+|++++|++|   +.|+.|++||+++++. 
T Consensus       185 ~~~~~~------l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~  258 (402)
T 2aq5_A          185 SRDGAL------ICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEP  258 (402)
T ss_dssp             CTTSSC------EEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSC
T ss_pred             CCCCCE------EEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCC
Confidence            999884      455678999999999999998888 677655 8999999999999999   7899999999988654 


Q ss_pred             EEEeecccccceEEEEEcCCCCeEEE-EECCCcEEEEEecCCcC
Q 015490          335 RTAVKKAHLGIVTALAFSYDSRALVS-ASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       335 ~~~~~~~~~~~v~~~~~sp~~~~l~s-~s~dg~i~iw~~~~~~~  377 (406)
                      .......|...+.+++|+|++++|++ ++.||.|++|++.+++.
T Consensus       259 ~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~  302 (402)
T 2aq5_A          259 LSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP  302 (402)
T ss_dssp             SEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred             ceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence            33332257788999999999999975 55799999999998773

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.2e-31  Score=235.82  Aligned_cols=202  Identities=14%  Similarity=0.144  Sum_probs=171.1

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCC--cceEeeeeccCCceeEEEEcc--CCCEEEEEeCCCCEEEEEcCCC
Q 015490          166 NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPS--LEIILNESEAHASVKDLSFSP--DGKFLVSLGNRGPGRVWDLASS  241 (406)
Q Consensus       166 ~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~i~~~~~s~--~~~~l~s~s~d~~i~iwd~~~~  241 (406)
                      |...|.+++|+|+|++|++|+.|++|++||+.+  .+.+..+.+|...|.+++|++  ++++|++++.|++|++||++++
T Consensus         8 h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~   87 (297)
T 2pm7_B            8 HNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENG   87 (297)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSS
T ss_pred             CcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCC
Confidence            558899999999999999999999999999974  356677888989999999986  3889999999999999999887


Q ss_pred             e--eeeecccCCcceEEEEEEEcC--CCCceEEEEEEEcCCCcEEEEEeCCCce--EEEEeeecCCCeEEEEEcCC----
Q 015490          242 A--VATPLAKENDELFASCRFSPL--NNEDYVLYIAAITDRGASIVTWNTTTWK--RIRTKQVVREPVSSFNVSAD----  311 (406)
Q Consensus       242 ~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~i~~~~~sp~----  311 (406)
                      +  ....+.. +...+.+++|+|+  +.      .+++++.|+.|++||+++..  ....+..|...|.+++|+|+    
T Consensus        88 ~~~~~~~~~~-h~~~v~~v~~~p~~~g~------~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~  160 (297)
T 2pm7_B           88 RWSQIAVHAV-HSASVNSVQWAPHEYGP------MLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  160 (297)
T ss_dssp             CBCCCEEECC-CSSCEEEEEECCGGGCS------EEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---
T ss_pred             ceEEEEEeec-CCCceeEEEeCcCCCCc------EEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc
Confidence            4  3333433 4567999999997  44      45667889999999998753  24566788899999999997    


Q ss_pred             ---------CCEEEEEeCCCcEEEEECCCce----EEEEeecccccceEEEEEcCCC---CeEEEEECCCcEEEEEecCC
Q 015490          312 ---------GKLLAVGTASGDISIIDSSSLQ----VRTAVKKAHLGIVTALAFSYDS---RALVSASMDSSVRVTVIEDK  375 (406)
Q Consensus       312 ---------~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~v~~~~~sp~~---~~l~s~s~dg~i~iw~~~~~  375 (406)
                               +++|++|+.|+.|++||+++++    ....+. +|...|.+++|+|++   .+|++++.|++|++||++++
T Consensus       161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~-~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~  239 (297)
T 2pm7_B          161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE  239 (297)
T ss_dssp             ---------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             cccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec-CCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence                     5799999999999999998755    455664 899999999999984   89999999999999999874

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.5e-31  Score=244.05  Aligned_cols=245  Identities=14%  Similarity=0.132  Sum_probs=198.3

Q ss_pred             EEecCCCCce--EEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEE
Q 015490          108 ELRTDSDLPY--RMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAA  184 (406)
Q Consensus       108 ~~~~h~~~v~--~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  184 (406)
                      ...+|...+.  +++|++  ..+++++ ++.+++|+.+.  +.....          ....+...|.+++|+|++++|++
T Consensus        86 ~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~--~~~~~~----------~~~~~~~~v~~v~~s~~~~~l~~  151 (401)
T 4aez_A           86 DAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADS--GSVSAL----------AETDESTYVASVKWSHDGSFLSV  151 (401)
T ss_dssp             ECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTT--CCEEEE----------EECCTTCCEEEEEECTTSSEEEE
T ss_pred             eCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCC--CcEeEe----------eecCCCCCEEEEEECCCCCEEEE
Confidence            3346766644  466654  4455554 88877776543  322211          11225678999999999999999


Q ss_pred             eeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCC-CeeeeecccCCcceEEEEEEEcC
Q 015490          185 GSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLAS-SAVATPLAKENDELFASCRFSPL  263 (406)
Q Consensus       185 ~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~  263 (406)
                      |+.||.|++||+.+++.+..+..|...|.+++|  ++++|++++.|+.|++||++. ......+.. +...+.+++|+|+
T Consensus       152 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~  228 (401)
T 4aez_A          152 GLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQG-HSSEVCGLAWRSD  228 (401)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEEC-CSSCEEEEEECTT
T ss_pred             ECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcC-CCCCeeEEEEcCC
Confidence            999999999999999999898888889999999  457999999999999999984 444555554 4567899999998


Q ss_pred             CCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCC-CEEEEEe--CCCcEEEEECCCceEEEEeec
Q 015490          264 NNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADG-KLLAVGT--ASGDISIIDSSSLQVRTAVKK  340 (406)
Q Consensus       264 ~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~-~~l~~~~--~dg~i~i~d~~~~~~~~~~~~  340 (406)
                      +.      .+++++.|+.|++||+++++.+..+..|...|.+++|+|++ .++++++  .|+.|++||+.+++.+..+. 
T Consensus       229 ~~------~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-  301 (401)
T 4aez_A          229 GL------QLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-  301 (401)
T ss_dssp             SS------EEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-
T ss_pred             CC------EEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-
Confidence            87      35667789999999999999999999999999999999976 4666654  69999999999999998885 


Q ss_pred             ccccceEEEEEcCCCCeEEEEE--CCCcEEEEEecCCcC
Q 015490          341 AHLGIVTALAFSYDSRALVSAS--MDSSVRVTVIEDKKK  377 (406)
Q Consensus       341 ~~~~~v~~~~~sp~~~~l~s~s--~dg~i~iw~~~~~~~  377 (406)
                       +...|.+++|+|++++|++++  .||.|++|++.+++.
T Consensus       302 -~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~  339 (401)
T 4aez_A          302 -AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGL  339 (401)
T ss_dssp             -CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEE
T ss_pred             -CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccc
Confidence             778899999999999999854  899999999988543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.8e-31  Score=246.53  Aligned_cols=252  Identities=12%  Similarity=0.047  Sum_probs=198.6

Q ss_pred             CCceEEEEccCCCeEEEEecCCeEEEEEeccccc---ceeecceecc-------------c----------e--------
Q 015490          114 DLPYRMAIHPHGDGIICALQNSCRLFEWDEVENT---EIRRLGVKIS-------------E----------K--------  159 (406)
Q Consensus       114 ~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~-------------~----------~--------  159 (406)
                      .++.+++|+|+|++|+++.++.+++|++..  ++   .+..+.....             .          +        
T Consensus         5 ~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAIIKNCILSFKYQS--PNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             CCCCEEEECSSSSEEEEEETTEEEEEEEET--TTEEEEEEEEECCC----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEEeCCeEEEEECCC--CCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            578999999999988887788877776643  33   2222111000             0          0        


Q ss_pred             -----------eeec-ccccCcEEEEEECCCCCEE-EEeeCCCeEEEEeCC--CcceEeeee--ccCCceeEEEEccCCC
Q 015490          160 -----------VLSQ-LENVGQQLALTFDSEGTIF-AAGSENGNLRVFKWP--SLEIILNES--EAHASVKDLSFSPDGK  222 (406)
Q Consensus       160 -----------~~~~-~~~~~~v~~~~~s~~g~~l-~~~~~dg~i~vwd~~--~~~~~~~~~--~~~~~i~~~~~s~~~~  222 (406)
                                 .... -.+.+.|.+++|+|++++| ++++.||.|++||+.  +++....+.  .+...|.+++|+|+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  162 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT  162 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence                       0000 0122479999999999996 899999999999998  787777665  4456899999999999


Q ss_pred             EEEEEeCCCCEEEEEcCCCeeee----ecccCCcceEEEEEEEcC---CCCceEEEEEEEcCCCcEEEEEeCCCceEEEE
Q 015490          223 FLVSLGNRGPGRVWDLASSAVAT----PLAKENDELFASCRFSPL---NNEDYVLYIAAITDRGASIVTWNTTTWKRIRT  295 (406)
Q Consensus       223 ~l~s~s~d~~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~  295 (406)
                      +|++++.++.+++|++.+++...    .+.. +...+.+++|+|+   ++      .+++++.|+.|++||+++++.+..
T Consensus       163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~~------~l~s~~~d~~i~vwd~~~~~~~~~  235 (450)
T 2vdu_B          163 TVIIADKFGDVYSIDINSIPEEKFTQEPILG-HVSMLTDVHLIKDSDGHQ------FIITSDRDEHIKISHYPQCFIVDK  235 (450)
T ss_dssp             EEEEEETTSEEEEEETTSCCCSSCCCCCSEE-CSSCEEEEEEEECTTSCE------EEEEEETTSCEEEEEESCTTCEEE
T ss_pred             EEEEEeCCCcEEEEecCCcccccccceeeec-ccCceEEEEEcCCCCCCc------EEEEEcCCCcEEEEECCCCceeee
Confidence            99999999999999998876543    4443 4567999999999   65      355667899999999999888777


Q ss_pred             -eeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeec------------------------ccccceEEEE
Q 015490          296 -KQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKK------------------------AHLGIVTALA  350 (406)
Q Consensus       296 -~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------------------------~~~~~v~~~~  350 (406)
                       +..|...|.+++|+ ++++|++++.|+.|++||+.+++.+..+..                        .....|.+++
T Consensus       236 ~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  314 (450)
T 2vdu_B          236 WLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKII  314 (450)
T ss_dssp             ECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEE
T ss_pred             eecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEE
Confidence             55788999999999 999999999999999999999998887752                        1234689999


Q ss_pred             EcCCCCeEEEEE-CCCcEEEEEe--cCC
Q 015490          351 FSYDSRALVSAS-MDSSVRVTVI--EDK  375 (406)
Q Consensus       351 ~sp~~~~l~s~s-~dg~i~iw~~--~~~  375 (406)
                      |+|++++|++++ .|+.|++|++  .++
T Consensus       315 ~~~~~~~l~~~~~~d~~i~iw~~~~~~~  342 (450)
T 2vdu_B          315 KSKNLPFVAFFVEATKCIIILEMSEKQK  342 (450)
T ss_dssp             ECSSSSEEEEEETTCSEEEEEEECSSST
T ss_pred             EeCCCCEEEEEECCCCeEEEEEeccCCC
Confidence            999999999999 8999999999  444

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=1.4e-29  Score=233.16  Aligned_cols=261  Identities=20%  Similarity=0.219  Sum_probs=206.6

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeeccccc
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV  167 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (406)
                      .+..|+....    +.+..+..|. .+.+++|+|+++++++++  ++.+++|  +..+++            ....+..+
T Consensus        13 ~v~v~d~~~~----~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~--d~~~~~------------~~~~~~~~   73 (391)
T 1l0q_A           13 NISVIDVTSN----KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSII--DTATNN------------VIATVPAG   73 (391)
T ss_dssp             EEEEEETTTT----EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEE--ETTTTE------------EEEEEECS
T ss_pred             EEEEEECCCC----eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEE--ECCCCe------------EEEEEECC
Confidence            5666776552    4556676665 489999999999886554  6665554  544333            33344455


Q ss_pred             CcEEEEEECCCCCEEEE-eeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEE-EEEeCCCCEEEEEcCCCeeee
Q 015490          168 GQQLALTFDSEGTIFAA-GSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFL-VSLGNRGPGRVWDLASSAVAT  245 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~s~s~d~~i~iwd~~~~~~~~  245 (406)
                      ..+.+++|+|+++++++ ++.++.|++||+.+++....+.. +..+.+++|+|+++.+ ++++.++.|++||+.+++...
T Consensus        74 ~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~  152 (391)
T 1l0q_A           74 SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN  152 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence            68999999999997754 45679999999999988766654 4578999999999977 677789999999999999888


Q ss_pred             ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEe---CCC
Q 015490          246 PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGT---ASG  322 (406)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~---~dg  322 (406)
                      .+..+  ..+..++|+|+++.     +++++..++.|++||+++++....+.. ...+.+++|+|++++|++++   .++
T Consensus       153 ~~~~~--~~~~~~~~~~dg~~-----l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~  224 (391)
T 1l0q_A          153 TVSVG--RSPKGIAVTPDGTK-----VYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFN  224 (391)
T ss_dssp             EEECC--SSEEEEEECTTSSE-----EEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCC
T ss_pred             EEecC--CCcceEEECCCCCE-----EEEEeCCCCEEEEEECCCCeEEEEEec-CCCccceEECCCCCEEEEEecCcCCC
Confidence            77654  33578999999985     445667889999999999988777764 46789999999999999888   689


Q ss_pred             cEEEEECCCceEEEEeecccccceEEEEEcCCCCeE-EEEECCCcEEEEEecCCcCCCC
Q 015490          323 DISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRAL-VSASMDSSVRVTVIEDKKKSGG  380 (406)
Q Consensus       323 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~s~s~dg~i~iw~~~~~~~~~~  380 (406)
                      .|++||+.+++.+..+. .| ..+.+++|+|++++| ++++.|+.|++||+.+++.+..
T Consensus       225 ~v~~~d~~~~~~~~~~~-~~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~  281 (391)
T 1l0q_A          225 TVSMIDTGTNKITARIP-VG-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITAT  281 (391)
T ss_dssp             EEEEEETTTTEEEEEEE-CC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cEEEEECCCCeEEEEEe-cC-CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEE
Confidence            99999999999888886 44 457899999999887 6778899999999998776543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-31  Score=266.81  Aligned_cols=191  Identities=16%  Similarity=0.151  Sum_probs=149.7

Q ss_pred             CEEEEeeCCCeEEEEeCCCcceEee-------eeccCC----------------------------------ceeEEEEc
Q 015490          180 TIFAAGSENGNLRVFKWPSLEIILN-------ESEAHA----------------------------------SVKDLSFS  218 (406)
Q Consensus       180 ~~l~~~~~dg~i~vwd~~~~~~~~~-------~~~~~~----------------------------------~i~~~~~s  218 (406)
                      ..+++++.||.|++||+.++.....       +..|+.                                  .+.+++|+
T Consensus       365 ~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~s  444 (902)
T 2oaj_A          365 GLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPA  444 (902)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCC
T ss_pred             eeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccccc
Confidence            3677778888999999876643221       112222                                  34455667


Q ss_pred             cCCCEEEEEeCCCCEEEEEcCCCeeee--ecc--------cCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC
Q 015490          219 PDGKFLVSLGNRGPGRVWDLASSAVAT--PLA--------KENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT  288 (406)
Q Consensus       219 ~~~~~l~s~s~d~~i~iwd~~~~~~~~--~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~  288 (406)
                      |++++|++++.|++|++||+.++....  .+.        ..+...|.+++|+|+++      .+++++.|++|++||+.
T Consensus       445 pdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~------~LAsgs~DgtV~lwd~~  518 (902)
T 2oaj_A          445 EYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETL------ELAVSIETGDVVLFKYE  518 (902)
T ss_dssp             SEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTT------EEEEEETTSCEEEEEEE
T ss_pred             ccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCC------eEEEEecCcEEEEEEec
Confidence            899999999999999999998874211  010        14556799999999998      46777899999999987


Q ss_pred             Cc---------------------------------------------eEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCc
Q 015490          289 TW---------------------------------------------KRIRTKQVVREPVSSFNVSADGKLLAVGTASGD  323 (406)
Q Consensus       289 ~~---------------------------------------------~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~  323 (406)
                      ++                                             +++..+..|.+.|++++||||| +||+|+.|++
T Consensus       519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~t  597 (902)
T 2oaj_A          519 VNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGS  597 (902)
T ss_dssp             ECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSE
T ss_pred             CccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCc
Confidence            65                                             2466778899999999999999 9999999999


Q ss_pred             EEEEECCCceEEEEee-----cccccceEEEEEc-----CCC---CeEEEEECCCcEEEEEe---cCCcC
Q 015490          324 ISIIDSSSLQVRTAVK-----KAHLGIVTALAFS-----YDS---RALVSASMDSSVRVTVI---EDKKK  377 (406)
Q Consensus       324 i~i~d~~~~~~~~~~~-----~~~~~~v~~~~~s-----p~~---~~l~s~s~dg~i~iw~~---~~~~~  377 (406)
                      |++||+++...+....     .+|...|++++|+     |||   ++|++|+.|++|++||+   .+++.
T Consensus       598 v~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~  667 (902)
T 2oaj_A          598 LMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKF  667 (902)
T ss_dssp             EEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCE
T ss_pred             EEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcE
Confidence            9999998877654211     2788999999999     885   89999999999999999   66554

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=6.3e-30  Score=239.63  Aligned_cols=267  Identities=17%  Similarity=0.205  Sum_probs=218.5

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVEN  146 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~  146 (406)
                      +++.+++++..|          .+..|+...    .+.+..+.+|.+.|.+++|+  +..+++++ |+.+++|++..  +
T Consensus       128 ~g~~l~sg~~dg----------~i~vwd~~~----~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~--~  189 (445)
T 2ovr_B          128 CGNRIVSGSDDN----------TLKVWSAVT----GKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAET--G  189 (445)
T ss_dssp             ETTEEEEEETTS----------CEEEEETTT----CCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT--T
T ss_pred             cCCEEEEEECCC----------cEEEEECCC----CcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCc--C
Confidence            456666654433          345555544    34678889999999999997  56788887 88888877642  2


Q ss_pred             cceeecceeccceeeeccc-ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEE
Q 015490          147 TEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLV  225 (406)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  225 (406)
                      +            ....+. |...|.++.|+  ++.+++|+.||.|++||+.+++....+..|...|.+++|  ++++++
T Consensus       190 ~------------~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~  253 (445)
T 2ovr_B          190 E------------CIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVV  253 (445)
T ss_dssp             E------------EEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEE
T ss_pred             c------------EEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEE
Confidence            2            223333 45789999995  568999999999999999999999888888889999999  688999


Q ss_pred             EEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEE
Q 015490          226 SLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSS  305 (406)
Q Consensus       226 s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~  305 (406)
                      +++.|+.|++||+++++....+..+ ...+.++.|  ++.      .+++++.|+.|++||+++++.+..+..|...+.+
T Consensus       254 ~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~--~~~------~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~  324 (445)
T 2ovr_B          254 SGAYDFMVKVWDPETETCLHTLQGH-TNRVYSLQF--DGI------HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG  324 (445)
T ss_dssp             EEETTSCEEEEEGGGTEEEEEECCC-SSCEEEEEE--CSS------EEEEEETTSCEEEEETTTCCEEEEECCCCSCEEE
T ss_pred             EEcCCCEEEEEECCCCcEeEEecCC-CCceEEEEE--CCC------EEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEE
Confidence            9999999999999999998888754 456888888  454      3566678999999999999999999999888888


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeec--ccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490          306 FNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKK--AHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       306 ~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~  381 (406)
                      +.++  ++++++|+.||.|++||+++++.+..+..  .|...|.+++|+  +++|++++.||.|++||+.+++.+..+
T Consensus       325 ~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~  398 (445)
T 2ovr_B          325 MELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNL  398 (445)
T ss_dssp             EEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeee
Confidence            8875  67999999999999999999999888852  288899999996  579999999999999999998876554

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-30  Score=261.66  Aligned_cols=244  Identities=11%  Similarity=0.082  Sum_probs=196.4

Q ss_pred             EEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEee
Q 015490          108 ELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGS  186 (406)
Q Consensus       108 ~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  186 (406)
                      ...+|.+.|++++|+|++++|++|+ |+.++||+..  .            .+....+.+...|.+++|+| |++|++++
T Consensus        12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~--~------------~~~~~~~~~~~~V~~l~fsp-g~~L~S~s   76 (902)
T 2oaj_A           12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQ--Q------------VEVVIKLEDRSAIKEMRFVK-GIYLVVIN   76 (902)
T ss_dssp             EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECST--T------------CEEEEECSSCCCEEEEEEET-TTEEEEEE
T ss_pred             cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCC--C------------cEEEEEcCCCCCEEEEEEcC-CCEEEEEE
Confidence            3458999999999999999999998 8888887532  1            22223344567899999999 88999999


Q ss_pred             CCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeee----------ecccCCcceEE
Q 015490          187 ENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT----------PLAKENDELFA  256 (406)
Q Consensus       187 ~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~----------~~~~~~~~~~~  256 (406)
                      .|++|++||+++++.+..+. ++..|++++|+|++++|++++.||.|++||+++++...          .....+...|.
T Consensus        77 ~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~  155 (902)
T 2oaj_A           77 AKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIV  155 (902)
T ss_dssp             TTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCC
T ss_pred             CcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeE
Confidence            99999999999998887774 66789999999999999999999999999999887531          11123456789


Q ss_pred             EEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeec------------------CCCeEEEEEcCCCCEEEEE
Q 015490          257 SCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVV------------------REPVSSFNVSADGKLLAVG  318 (406)
Q Consensus       257 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~------------------~~~i~~~~~sp~~~~l~~~  318 (406)
                      +++|+|++..     .+++++.++.| +||+++++.+..+..|                  ...|.+++|+|+|++|+++
T Consensus       156 sl~~sp~~~~-----~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasg  229 (902)
T 2oaj_A          156 SIQWNPRDIG-----TVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITI  229 (902)
T ss_dssp             EEEEETTEEE-----EEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEE
T ss_pred             EEEEccCCCC-----EEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEE
Confidence            9999997643     45667889999 9999999988888765                  4679999999999999999


Q ss_pred             eCCCcEEEEECCCceEEEE--ee--cc-------------cccceEEEEEc----CCC-CeEEEEECC-----CcEEEEE
Q 015490          319 TASGDISIIDSSSLQVRTA--VK--KA-------------HLGIVTALAFS----YDS-RALVSASMD-----SSVRVTV  371 (406)
Q Consensus       319 ~~dg~i~i~d~~~~~~~~~--~~--~~-------------~~~~v~~~~~s----p~~-~~l~s~s~d-----g~i~iw~  371 (406)
                      +.||.|++||+++++.+..  +.  ..             |..+|.+++|+    |++ .+|++|+.|     ..+.+|+
T Consensus       230 s~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~  309 (902)
T 2oaj_A          230 HEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMID  309 (902)
T ss_dssp             ETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEE
T ss_pred             ECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEe
Confidence            9999999999999887653  21  01             34579999995    443 567777766     3799998


Q ss_pred             ec
Q 015490          372 IE  373 (406)
Q Consensus       372 ~~  373 (406)
                      +.
T Consensus       310 ~~  311 (902)
T 2oaj_A          310 LG  311 (902)
T ss_dssp             EE
T ss_pred             cC
Confidence            63

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.9e-31  Score=245.70  Aligned_cols=246  Identities=13%  Similarity=0.078  Sum_probs=169.6

Q ss_pred             CCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccc-cCcEEEEEECC--------CCCE
Q 015490          112 DSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLEN-VGQQLALTFDS--------EGTI  181 (406)
Q Consensus       112 h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~--------~g~~  181 (406)
                      |...+....+.+++.++++++ |++++||+.+.....         ....+..+.+ .+.|++++|+|        |+++
T Consensus        88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~---------~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~  158 (393)
T 4gq1_A           88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETII---------TQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQV  158 (393)
T ss_dssp             ---------CCEEEEEEEEEETTSCEEEEEEETTEEE---------EEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEE
T ss_pred             cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccc---------eeeeecccCCCCCceEEEEEccccccccCCCCCE
Confidence            344444444555666788887 999999987753211         1123334444 48899999997        8899


Q ss_pred             EEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCC-EEEEEeCCCCEEEEEcCCCeeeeecc------------
Q 015490          182 FAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGK-FLVSLGNRGPGRVWDLASSAVATPLA------------  248 (406)
Q Consensus       182 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~------------  248 (406)
                      ||+|+.|++|+|||+.++.....+..|+..|.+++|+|++. +|++++.|++|++||+++++......            
T Consensus       159 las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s  238 (393)
T 4gq1_A          159 IASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLT  238 (393)
T ss_dssp             EEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEE
T ss_pred             EEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEe
Confidence            99999999999999998888888888999999999999875 79999999999999998876543221            


Q ss_pred             ------------cCCcceEEEEEEE-cCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEE--------
Q 015490          249 ------------KENDELFASCRFS-PLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFN--------  307 (406)
Q Consensus       249 ------------~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~--------  307 (406)
                                  ..+...+.++.|+ ++++      .+++++.|+.+++||+.+++....+..+...+..+.        
T Consensus       239 ~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~------~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  312 (393)
T 4gq1_A          239 LNTLPLVNTCHSSGIASSLANVRWIGSDGS------GILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGI  312 (393)
T ss_dssp             EESGGGC------CCSSSCSEEEEETTTTC------EEEEECTTSEEEEEEC-------------------CCSCSEEEE
T ss_pred             cccccceeeeecccccccceeeeeecCCCC------EEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccc
Confidence                        1233456678887 5666      356678899999999998776666655544443333        


Q ss_pred             ----------EcC--CCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490          308 ----------VSA--DGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIED  374 (406)
Q Consensus       308 ----------~sp--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~  374 (406)
                                |+|  ++.++++|+.||.|++||+.+++....+. .|..+|.+++|+|||++||+++.|| +.+|.+..
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~-~~~~~V~svafspdG~~LA~as~~G-v~lvrL~g  389 (393)
T 4gq1_A          313 SLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPI-QLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLMG  389 (393)
T ss_dssp             CSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEE-ECSSCEEEEEECTTSSEEEEEESSE-EEEEEEGG
T ss_pred             cccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEec-CCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEeC
Confidence                      333  34467788889999999999988877775 7889999999999999999998766 77787754

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.6e-29  Score=236.81  Aligned_cols=250  Identities=15%  Similarity=0.227  Sum_probs=207.9

Q ss_pred             EEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccC
Q 015490           91 LSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVG  168 (406)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  168 (406)
                      +..|+...    .+.+..+.+|...|.+++|+  +..+++++ ++.+++|+...  ++            .+..+. +..
T Consensus       181 i~vwd~~~----~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~--~~------------~~~~~~~~~~  240 (445)
T 2ovr_B          181 LKVWNAET----GECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIET--GQ------------CLHVLMGHVA  240 (445)
T ss_dssp             EEEEETTT----TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSS--CC------------EEEEEECCSS
T ss_pred             EEEEECCc----CcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCC--Cc------------EEEEEcCCcc
Confidence            45556554    24678899999999999996  46788777 88888876542  22            222222 457


Q ss_pred             cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecc
Q 015490          169 QQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLA  248 (406)
Q Consensus       169 ~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  248 (406)
                      .+.+++|  +++++++|+.||.|++||+++++.+..+..|...|.+++|  ++.++++++.|+.|++||+++++....+.
T Consensus       241 ~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  316 (445)
T 2ovr_B          241 AVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLT  316 (445)
T ss_dssp             CEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             cEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEc
Confidence            8999999  7889999999999999999999999888888889999999  78899999999999999999999988887


Q ss_pred             cCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeee---cCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 015490          249 KENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQV---VREPVSSFNVSADGKLLAVGTASGDIS  325 (406)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~---~~~~i~~~~~sp~~~~l~~~~~dg~i~  325 (406)
                      .+. ..+.++.++  +.      .+++++.|+.|++||+++++.+..+..   |...|.+++|+  +++|++|+.||.|+
T Consensus       317 ~~~-~~v~~~~~~--~~------~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~  385 (445)
T 2ovr_B          317 GHQ-SLTSGMELK--DN------ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVK  385 (445)
T ss_dssp             CCC-SCEEEEEEE--TT------EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEE
T ss_pred             CCc-ccEEEEEEe--CC------EEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEE
Confidence            654 456666664  33      345667899999999999999998886   77889999996  67999999999999


Q ss_pred             EEECCCceEEEEee----cccccceEEEEEcCCCCeEEEEECCCc----EEEEEecCC
Q 015490          326 IIDSSSLQVRTAVK----KAHLGIVTALAFSYDSRALVSASMDSS----VRVTVIEDK  375 (406)
Q Consensus       326 i~d~~~~~~~~~~~----~~~~~~v~~~~~sp~~~~l~s~s~dg~----i~iw~~~~~  375 (406)
                      +||+.+++.+..+.    ..|.+.|.+++|+|++.++++|+.||+    |.+||++..
T Consensus       386 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          386 LWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             EEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             EEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence            99999999888772    267889999999999999999999998    999999764

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.98  E-value=4.7e-31  Score=244.81  Aligned_cols=245  Identities=12%  Similarity=0.126  Sum_probs=187.5

Q ss_pred             EecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccce-------eec-----------cee-ccceeeecccccC
Q 015490          109 LRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEI-------RRL-----------GVK-ISEKVLSQLENVG  168 (406)
Q Consensus       109 ~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~-------~~~-----------~~~-~~~~~~~~~~~~~  168 (406)
                      -+.-...|.+++|+|||+++++++ |++++  +  ....+.+       ..+           .+. ........+.+..
T Consensus        11 ~~~~~~~v~sv~~SpDG~~iASas~D~TV~--d--~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~   86 (588)
T 2j04_A           11 RKEFEDWKNNLTWARDGTLYLTTFPDISIG--Q--PKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVC   86 (588)
T ss_dssp             SCCCSSSSCCEEECTTSCEEEECSSSEEEE--E--ECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSC
T ss_pred             HhHhhccEEEEEECCCCCEEEEEcCCceee--c--ccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCC
Confidence            344568889999999999888887 66665  2  2222211       011           110 0111223334567


Q ss_pred             cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCC-----ceeEEEEccCCCEEEEEeCCCCEEEEEcCCCee
Q 015490          169 QQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHA-----SVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAV  243 (406)
Q Consensus       169 ~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-----~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~  243 (406)
                      .|.+++|||||++||+++.||+|++||.+.  .+..+. |+.     .|.+++|||||++|++++.||+|++||+.++..
T Consensus        87 ~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l  163 (588)
T 2j04_A           87 YPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSE  163 (588)
T ss_dssp             CEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTT
T ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcc
Confidence            899999999999999999999999999544  444444 554     499999999999999999999999999998752


Q ss_pred             -------eeecc---cCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceE---EEEee-ecCCCeEEEEEc
Q 015490          244 -------ATPLA---KENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKR---IRTKQ-VVREPVSSFNVS  309 (406)
Q Consensus       244 -------~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~---~~~~~-~~~~~i~~~~~s  309 (406)
                             +..+.   ..|...|.+++|+|++ -       ++++.|+.|++||+.+++.   ..++. .|...|.+++|+
T Consensus       164 ~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-L-------aass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs  235 (588)
T 2j04_A          164 NTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-L-------VAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV  235 (588)
T ss_dssp             TCCCCEEEEEEECSCTTCCCCEEEEEEETTE-E-------EEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE
T ss_pred             ccccceeeeeeecccccccccEEEEEEcCCc-E-------EEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE
Confidence                   44542   3345789999999987 3       3445699999999988773   34563 677889999999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEE--cCCCCeEEEEECCCcEEEEEec
Q 015490          310 ADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAF--SYDSRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       310 p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~--sp~~~~l~s~s~dg~i~iw~~~  373 (406)
                        |+.||+++ ++.|++||+.+++...... +|...|..+.|  +|++..|++++.||+ ++|..+
T Consensus       236 --g~~LASa~-~~tIkLWd~~~~~~~~~~~-gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          236 --DYKVVLTC-PGYVHKIDLKNYSISSLKT-GSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             --TTEEEEEC-SSEEEEEETTTTEEEEEEC-SCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             --CCEEEEEe-CCeEEEEECCCCeEEEEEc-CCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence              68999987 6999999999887744443 79999999999  999999999999999 999986

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.98  E-value=8.6e-30  Score=237.98  Aligned_cols=237  Identities=19%  Similarity=0.304  Sum_probs=199.3

Q ss_pred             eeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCCEEE
Q 015490          106 VAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIFA  183 (406)
Q Consensus       106 ~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~  183 (406)
                      +....+|...|.++++  +++++++++ ++.+++|+...  ++            ....+. |...|.+++|  ++++|+
T Consensus       126 ~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~--~~------------~~~~~~~h~~~v~~l~~--~~~~l~  187 (435)
T 1p22_A          126 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNT--LE------------CKRILTGHTGSVLCLQY--DERVII  187 (435)
T ss_dssp             EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSS--CC------------EEEEECCCSSCEEEEEC--CSSEEE
T ss_pred             EecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCC--Ce------------EEEEEcCCCCcEEEEEE--CCCEEE
Confidence            3344567778988887  788999887 88888876542  22            222333 4578999999  788999


Q ss_pred             EeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeee---eecccCCcceEEEEEE
Q 015490          184 AGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVA---TPLAKENDELFASCRF  260 (406)
Q Consensus       184 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~  260 (406)
                      +|+.||+|++||+.+++....+..|...|.+++|++  ..+++++.|+.|++||+++++..   ..+. .+...+.+++|
T Consensus       188 sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~v~~~~~  264 (435)
T 1p22_A          188 TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLV-GHRAAVNVVDF  264 (435)
T ss_dssp             EEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEEC-CCSSCEEEEEE
T ss_pred             EEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEec-CCCCcEEEEEe
Confidence            999999999999999999999988888999999974  59999999999999999987655   3333 45567888888


Q ss_pred             EcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeec
Q 015490          261 SPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKK  340 (406)
Q Consensus       261 ~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  340 (406)
                        +++      .+++++.|+.|++||+++++.+..+..|...+.++.++  ++++++|+.||.|++||+++++.+..+. 
T Consensus       265 --~~~------~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~-  333 (435)
T 1p22_A          265 --DDK------YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLE-  333 (435)
T ss_dssp             --ETT------EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEEC-
T ss_pred             --CCC------EEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEe-
Confidence              444      35666789999999999999999999999999999984  7899999999999999999999999886 


Q ss_pred             ccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490          341 AHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       341 ~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~  376 (406)
                      +|...|.+++|  ++.+|++|+.||.|++||+.+++
T Consensus       334 ~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~  367 (435)
T 1p22_A          334 GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAAL  367 (435)
T ss_dssp             CCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHT
T ss_pred             CCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCC
Confidence            89999999999  78899999999999999997765

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6.8e-31  Score=237.61  Aligned_cols=233  Identities=8%  Similarity=0.050  Sum_probs=182.5

Q ss_pred             EEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCC-
Q 015490          120 AIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWP-  197 (406)
Q Consensus       120 ~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~-  197 (406)
                      .+.+++..+++|+ |+.+++|++..  ++....+            . ...|.++.|+|+   +++++.|++|++|+.. 
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~--~~~~~~~------------~-~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~  104 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKD--SKTITTI------------T-TPNPRTGGEHPA---IISRGPCNRLLLLYPGN  104 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESS--SSCEEEE------------E-EECCCTTCCCCS---EEEECSTTEEEEEETTT
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCC--CcEEEEE------------e-cCCceeeeeCCc---eEEecCCCeEEEEEccC
Confidence            3446778888887 88888887653  3222221            1 345667788887   8999999999999765 


Q ss_pred             --------CcceEeeee-ccCCceeEEEEcc--CCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCC
Q 015490          198 --------SLEIILNES-EAHASVKDLSFSP--DGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNE  266 (406)
Q Consensus       198 --------~~~~~~~~~-~~~~~i~~~~~s~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (406)
                              +++.+.... .|...|.+++|+|  +++++++++.|++|++||+++++.......++...+.+++|+|++. 
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~-  183 (343)
T 3lrv_A          105 QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSL-  183 (343)
T ss_dssp             EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSC-
T ss_pred             ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCC-
Confidence                    444344443 4446899999999  9999999999999999999999887766556666689999999998 


Q ss_pred             ceEEEEEEEcCCCcEEEEEeCCCceEE-EEeee-cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeec--cc
Q 015490          267 DYVLYIAAITDRGASIVTWNTTTWKRI-RTKQV-VREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKK--AH  342 (406)
Q Consensus       267 ~~~l~~~~~~~~~~~i~~~d~~~~~~~-~~~~~-~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~  342 (406)
                           ++++++.|+.|++||+++++.+ ..+.. |...|.+++|+|++++|++++ ++.|++||+++.+....+..  .|
T Consensus       184 -----~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~  257 (343)
T 3lrv_A          184 -----LLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIP  257 (343)
T ss_dssp             -----EEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-
T ss_pred             -----EEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccc
Confidence                 4677789999999999999877 77887 899999999999999999999 55999999998876554431  13


Q ss_pred             ccceE--EEEEcCCCCeEEEEEC-CCcEEEEEecCCcC
Q 015490          343 LGIVT--ALAFSYDSRALVSASM-DSSVRVTVIEDKKK  377 (406)
Q Consensus       343 ~~~v~--~~~~sp~~~~l~s~s~-dg~i~iw~~~~~~~  377 (406)
                      ...+.  +++|+|+|++|++++. |+.|++|++.+..+
T Consensus       258 ~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~  295 (343)
T 3lrv_A          258 EFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK  295 (343)
T ss_dssp             ----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred             cccccceEEEECCCCCEEEEecCCCCcEEEEEEccccc
Confidence            34444  6999999999999998 99999999976544

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=8e-29  Score=231.14  Aligned_cols=259  Identities=17%  Similarity=0.175  Sum_probs=203.4

Q ss_pred             EEEEecCCCCccc-cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-cc
Q 015490           91 LSHFDFASNSLSD-QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NV  167 (406)
Q Consensus        91 ~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  167 (406)
                      +..|+........ .....+.+|...|.+++|+|++..+++++ ++.+++|+.+  +++.            ...+. +.
T Consensus       146 i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~--~~~~------------~~~~~~~~  211 (433)
T 3bws_A          146 MDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLK--TLAY------------KATVDLTG  211 (433)
T ss_dssp             EEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETT--TCCE------------EEEEECSS
T ss_pred             EEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECC--CceE------------EEEEcCCC
Confidence            5566665433211 11114568999999999999999888876 6776666543  3222            22222 44


Q ss_pred             CcEEEEEECCCCCEEE-EeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEe--------CCCCEEEEEc
Q 015490          168 GQQLALTFDSEGTIFA-AGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLG--------NRGPGRVWDL  238 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s--------~d~~i~iwd~  238 (406)
                      ..+.+++|+|+++.++ +++.|+.|++||+++++....+.. ...+.+++|+|+++++++++        .|+.|++||+
T Consensus       212 ~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~  290 (433)
T 3bws_A          212 KWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSM  290 (433)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEET
T ss_pred             CCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEEC
Confidence            6799999999998875 455799999999999888766554 44699999999999999888        4889999999


Q ss_pred             CCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEE
Q 015490          239 ASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVG  318 (406)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~  318 (406)
                      ++++....+..  ...+..++|+|+++.     +++++..++.|++||+.+++.+..+. +...+.+++|+|+|++++++
T Consensus       291 ~~~~~~~~~~~--~~~~~~~~~~~~g~~-----l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~  362 (433)
T 3bws_A          291 DKEKLIDTIGP--PGNKRHIVSGNTENK-----IYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVS  362 (433)
T ss_dssp             TTTEEEEEEEE--EECEEEEEECSSTTE-----EEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEE
T ss_pred             CCCcEEeeccC--CCCcceEEECCCCCE-----EEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEE
Confidence            99887776532  335778999999985     55666789999999999998887776 55779999999999999988


Q ss_pred             eC---------------CCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEEC-CCcEEEEEecC
Q 015490          319 TA---------------SGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASM-DSSVRVTVIED  374 (406)
Q Consensus       319 ~~---------------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~-dg~i~iw~~~~  374 (406)
                      +.               ||.|++||+.+++.+..+.  +...+.+++|+|+|++|++++. |+.|++|+++.
T Consensus       363 ~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          363 CRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE--AGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             ECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             ecCCCccccccccccccceEEEEEECCCCcEEEEec--CCCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            76               4699999999999988886  3567899999999999988875 99999999864

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.97  E-value=7.5e-29  Score=223.48  Aligned_cols=247  Identities=16%  Similarity=0.195  Sum_probs=185.4

Q ss_pred             CcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEeccccc
Q 015490           69 NYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENT  147 (406)
Q Consensus        69 ~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~  147 (406)
                      +++++.++..+        .+.++.+.... .....+...+.+|...|.+++|+|++++|++++ |+.+++|........
T Consensus        51 ~~~l~S~s~D~--------~i~vWd~~~~~-~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~  121 (340)
T 4aow_A           51 PDMILSASRDK--------TIIMWKLTRDE-TNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTT  121 (340)
T ss_dssp             TTEEEEEETTS--------CEEEEEECCSS-SCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             CCEEEEEcCCC--------eEEEEECCCCC-cccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeeccccee
Confidence            45666554322        34555554432 222346778999999999999999999999987 777777664432111


Q ss_pred             ceee-----------------------------cceeccceeee-cccccCcEEEEEECCCC--CEEEEeeCCCeEEEEe
Q 015490          148 EIRR-----------------------------LGVKISEKVLS-QLENVGQQLALTFDSEG--TIFAAGSENGNLRVFK  195 (406)
Q Consensus       148 ~~~~-----------------------------~~~~~~~~~~~-~~~~~~~v~~~~~s~~g--~~l~~~~~dg~i~vwd  195 (406)
                      ....                             ........... ...+...+.+++|++++  .++++++.|+.|++||
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d  201 (340)
T 4aow_A          122 RRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN  201 (340)
T ss_dssp             EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEE
T ss_pred             eeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEE
Confidence            1000                             00000011111 12234678999999865  5788999999999999


Q ss_pred             CCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEE
Q 015490          196 WPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAI  275 (406)
Q Consensus       196 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  275 (406)
                      +++++....+.+|...|++++|+|++++|++++.|+.|++||+++.+.+..+..+  ..+.++.|+|++..     +  +
T Consensus       202 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~-----~--~  272 (340)
T 4aow_A          202 LANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG--DIINALCFSPNRYW-----L--C  272 (340)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS--SCEEEEEECSSSSE-----E--E
T ss_pred             CCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC--ceEEeeecCCCCce-----e--e
Confidence            9999999999889899999999999999999999999999999999988877643  46889999998752     2  2


Q ss_pred             cCCCcEEEEEeCCCceEEEEee---------ecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCce
Q 015490          276 TDRGASIVTWNTTTWKRIRTKQ---------VVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQ  333 (406)
Q Consensus       276 ~~~~~~i~~~d~~~~~~~~~~~---------~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~  333 (406)
                      ++.|+.|++||++++..+..+.         .|...|.+++|+|+|++|++|+.||.|+|||+.+|+
T Consensus       273 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          273 AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             ccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            3458999999999887766553         467789999999999999999999999999999875

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=6.7e-29  Score=224.04  Aligned_cols=253  Identities=15%  Similarity=0.112  Sum_probs=190.4

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEcc--CCCeEEEEe-cCCeEEEEEecc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHP--HGDGIICAL-QNSCRLFEWDEV  144 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp--~~~~l~~~~-~~~~~i~~~~~~  144 (406)
                      +++++++++..|        .+.++  +........+....+.+|...|.+++|+|  ++.+|++++ |+.+++|+++..
T Consensus        22 ~~~~l~~~~~dg--------~i~iw--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~   91 (351)
T 3f3f_A           22 YGRHVATCSSDQ--------HIKVF--KLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPD   91 (351)
T ss_dssp             SSSEEEEEETTS--------EEEEE--EECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTT
T ss_pred             CCCEEEEeeCCC--------eEEEE--ECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCC
Confidence            666777664332        34444  44433322356778899999999999999  689999988 899999988754


Q ss_pred             cccceeecceeccceeeecc-cccCcEEEEEECCC--CCEEEEeeCCCeEEEEeCCCcceEeeee-------------cc
Q 015490          145 ENTEIRRLGVKISEKVLSQL-ENVGQQLALTFDSE--GTIFAAGSENGNLRVFKWPSLEIILNES-------------EA  208 (406)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~--g~~l~~~~~dg~i~vwd~~~~~~~~~~~-------------~~  208 (406)
                      .......     ..+....+ .+...|.+++|+|+  +++|++++.||.|++||+++++.+..+.             .+
T Consensus        92 ~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (351)
T 3f3f_A           92 QEECSGR-----RWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANH  166 (351)
T ss_dssp             SCTTSSC-----SEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSC
T ss_pred             ccccccc-----CcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCc
Confidence            3211000     11223333 34588999999999  9999999999999999998876543332             45


Q ss_pred             CCceeEEEEccC---CCEEEEEeCCCCEEEEEcCCCee--eeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEE
Q 015490          209 HASVKDLSFSPD---GKFLVSLGNRGPGRVWDLASSAV--ATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIV  283 (406)
Q Consensus       209 ~~~i~~~~~s~~---~~~l~s~s~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~  283 (406)
                      ...+.+++|+|+   +.++++++.++.+.+|+...++.  ...+.. +...+.+++|+|++....  -++++++.|+.|+
T Consensus       167 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~~p~~~~~~--~~l~s~~~dg~i~  243 (351)
T 3f3f_A          167 LQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPG-HKSLIRSISWAPSIGRWY--QLIATGCKDGRIR  243 (351)
T ss_dssp             SCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCC-CCSCEEEEEECCCSSCSS--EEEEEEETTSCEE
T ss_pred             ccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCC-CCcceeEEEECCCCCCcc--eEEEEEcCCCeEE
Confidence            558999999997   89999999999998888877765  444544 456799999999983100  0456678899999


Q ss_pred             EEeCCCc----------------------------------------------eEEEEeeecCCCeEEEEEcCCCCEEEE
Q 015490          284 TWNTTTW----------------------------------------------KRIRTKQVVREPVSSFNVSADGKLLAV  317 (406)
Q Consensus       284 ~~d~~~~----------------------------------------------~~~~~~~~~~~~i~~~~~sp~~~~l~~  317 (406)
                      +||++++                                              +.+..+..|...|.+++|+|++++|++
T Consensus       244 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s  323 (351)
T 3f3f_A          244 IFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSS  323 (351)
T ss_dssp             EEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEE
T ss_pred             EEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEE
Confidence            9999864                                              566777788899999999999999999


Q ss_pred             EeCCCcEEEEECCCceEEEEe
Q 015490          318 GTASGDISIIDSSSLQVRTAV  338 (406)
Q Consensus       318 ~~~dg~i~i~d~~~~~~~~~~  338 (406)
                      ++.||.|++||+.+++....+
T Consensus       324 ~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          324 AGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             EETTSCEEEEEECTTSCEEEE
T ss_pred             ecCCCcEEEEecCcCcchhhe
Confidence            999999999999987655444

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.97  E-value=8.2e-31  Score=234.25  Aligned_cols=204  Identities=16%  Similarity=0.156  Sum_probs=168.7

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc--eEeeeeccCCceeEEEEcc--CCCEEEEEeCCCCEEEEEcCCC
Q 015490          166 NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLE--IILNESEAHASVKDLSFSP--DGKFLVSLGNRGPGRVWDLASS  241 (406)
Q Consensus       166 ~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~--~~~~l~s~s~d~~i~iwd~~~~  241 (406)
                      |.+.|++++|+|+|++|++|+.|++|++||+.+++  .+..+.+|...|.+++|++  ++++|++++.|++|++||++++
T Consensus        12 H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~   91 (316)
T 3bg1_A           12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENG   91 (316)
T ss_dssp             --CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSS
T ss_pred             ccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCC
Confidence            55899999999999999999999999999998764  4566778888999999986  4889999999999999999887


Q ss_pred             e--eeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceE---EEEeeecCCCeEEEEEcCC-----
Q 015490          242 A--VATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKR---IRTKQVVREPVSSFNVSAD-----  311 (406)
Q Consensus       242 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~i~~~~~sp~-----  311 (406)
                      +  ....+.. +...+.+++|+|+...    .++++++.|+.|++||++....   ...+..|...+.+++|+|+     
T Consensus        92 ~~~~~~~~~~-h~~~V~~v~~~p~~~g----~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  166 (316)
T 3bg1_A           92 TWEKSHEHAG-HDSSVNSVCWAPHDYG----LILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS  166 (316)
T ss_dssp             CCCEEEEECC-CSSCCCEEEECCTTTC----SCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred             cceEEEEccC-CCCceEEEEECCCCCC----cEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcc
Confidence            4  3444443 4556889999998321    1467788999999999987532   3345567788999999997     


Q ss_pred             ------------CCEEEEEeCCCcEEEEECCCc---eEEEEeecccccceEEEEEcCCC----CeEEEEECCCcEEEEEe
Q 015490          312 ------------GKLLAVGTASGDISIIDSSSL---QVRTAVKKAHLGIVTALAFSYDS----RALVSASMDSSVRVTVI  372 (406)
Q Consensus       312 ------------~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~v~~~~~sp~~----~~l~s~s~dg~i~iw~~  372 (406)
                                  +++|++|+.|+.|++||++..   +....+. +|...|.+++|+|++    ++|++++.|++|++|++
T Consensus       167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~-~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~  245 (316)
T 3bg1_A          167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE-AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTC  245 (316)
T ss_dssp             ----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB-CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEEC
T ss_pred             ccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc-cCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEc
Confidence                        478999999999999999754   4555664 899999999999986    78999999999999999


Q ss_pred             cCC
Q 015490          373 EDK  375 (406)
Q Consensus       373 ~~~  375 (406)
                      ++.
T Consensus       246 ~~~  248 (316)
T 3bg1_A          246 DDA  248 (316)
T ss_dssp             SST
T ss_pred             cCc
Confidence            873

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.2e-29  Score=229.21  Aligned_cols=203  Identities=14%  Similarity=0.162  Sum_probs=175.0

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCC--CcceEeeeeccCCceeEEEEccC--CCEEEEEeCCCCEEEEEcCCC
Q 015490          166 NVGQQLALTFDSEGTIFAAGSENGNLRVFKWP--SLEIILNESEAHASVKDLSFSPD--GKFLVSLGNRGPGRVWDLASS  241 (406)
Q Consensus       166 ~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~i~~~~~s~~--~~~l~s~s~d~~i~iwd~~~~  241 (406)
                      |...|.+++|+|++++|++|+.||.|++||+.  +++....+..|...|++++|+++  +++|++++.|+.|++||+.++
T Consensus        10 h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~   89 (379)
T 3jrp_A           10 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG   89 (379)
T ss_dssp             CCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETT
T ss_pred             CcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCC
Confidence            45889999999999999999999999999997  56667777888889999999977  899999999999999999998


Q ss_pred             e--eeeecccCCcceEEEEEEEcC--CCCceEEEEEEEcCCCcEEEEEeCCCce--EEEEeeecCCCeEEEEEcC-----
Q 015490          242 A--VATPLAKENDELFASCRFSPL--NNEDYVLYIAAITDRGASIVTWNTTTWK--RIRTKQVVREPVSSFNVSA-----  310 (406)
Q Consensus       242 ~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~i~~~~~sp-----  310 (406)
                      +  ....+.. +...+.+++|+|+  +.      .+++++.++.|++||+++..  ....+..|...|.+++|+|     
T Consensus        90 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~------~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  162 (379)
T 3jrp_A           90 RWSQIAVHAV-HSASVNSVQWAPHEYGP------LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  162 (379)
T ss_dssp             EEEEEEEECC-CSSCEEEEEECCGGGCS------EEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred             ceeEeeeecC-CCcceEEEEeCCCCCCC------EEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence            7  4455543 4567999999999  66      35666789999999998873  4556677889999999999     


Q ss_pred             --------CCCEEEEEeCCCcEEEEECCCce----EEEEeecccccceEEEEEcCC---CCeEEEEECCCcEEEEEecCC
Q 015490          311 --------DGKLLAVGTASGDISIIDSSSLQ----VRTAVKKAHLGIVTALAFSYD---SRALVSASMDSSVRVTVIEDK  375 (406)
Q Consensus       311 --------~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~v~~~~~sp~---~~~l~s~s~dg~i~iw~~~~~  375 (406)
                              +++++++++.||.|++||++++.    ....+. +|...|.+++|+|+   +++|++++.||.|++||++++
T Consensus       163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~  241 (379)
T 3jrp_A          163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  241 (379)
T ss_dssp             -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEe-cccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence                    69999999999999999997654    334553 79999999999999   899999999999999999986


Q ss_pred             c
Q 015490          376 K  376 (406)
Q Consensus       376 ~  376 (406)
                      +
T Consensus       242 ~  242 (379)
T 3jrp_A          242 Q  242 (379)
T ss_dssp             T
T ss_pred             C
Confidence            4

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=8.7e-29  Score=228.63  Aligned_cols=241  Identities=10%  Similarity=0.060  Sum_probs=164.2

Q ss_pred             cCCCCceEEEEcc-CCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCC---CCEEEEe
Q 015490          111 TDSDLPYRMAIHP-HGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSE---GTIFAAG  185 (406)
Q Consensus       111 ~h~~~v~~~~~sp-~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~~  185 (406)
                      +|...|.+++|+| ++.++++++ ++.+++|+++.              .+....+.+...+.++.|++.   +.+++++
T Consensus        97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (408)
T 4a11_B           97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNT--------------LQTADVFNFEETVYSHHMSPVSTKHCLVAVG  162 (408)
T ss_dssp             CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTT--------------TEEEEEEECSSCEEEEEECSSCSSCCEEEEE
T ss_pred             cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCC--------------CccceeccCCCceeeeEeecCCCCCcEEEEE
Confidence            5999999999999 677888887 78888876542              233344456678899999984   4599999


Q ss_pred             eCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCC-EEEEEeCCCCEEEEEcCCCe-eeeecc--------------c
Q 015490          186 SENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGK-FLVSLGNRGPGRVWDLASSA-VATPLA--------------K  249 (406)
Q Consensus       186 ~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~iwd~~~~~-~~~~~~--------------~  249 (406)
                      +.||.|++||+++++....+..|...|.+++|+|+++ .|++++.|+.|++||++++. ....+.              .
T Consensus       163 ~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (408)
T 4a11_B          163 TRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANT  242 (408)
T ss_dssp             ESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSC
T ss_pred             cCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccc
Confidence            9999999999999998888888888999999999998 58899999999999998765 222221              2


Q ss_pred             CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC----------------------------------------
Q 015490          250 ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT----------------------------------------  289 (406)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~----------------------------------------  289 (406)
                      .+...+.+++|+|+++.      +++++.|+.|++||+++                                        
T Consensus       243 ~~~~~v~~~~~~~~~~~------l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  316 (408)
T 4a11_B          243 AHNGKVNGLCFTSDGLH------LLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTI  316 (408)
T ss_dssp             SCSSCEEEEEECTTSSE------EEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEE
T ss_pred             cccCceeEEEEcCCCCE------EEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEE
Confidence            35567899999999873      44556677777777654                                        


Q ss_pred             -------ceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcC-CCCeEEEE
Q 015490          290 -------WKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSY-DSRALVSA  361 (406)
Q Consensus       290 -------~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~  361 (406)
                             ++.+..+..|...|.+++|+|++++|++++.||.|++||+.+++.+.... .+.   ....+.+ +...+.+.
T Consensus       317 ~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~  392 (408)
T 4a11_B          317 AVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDD-ETT---TKSQLNPAFEDAWSSS  392 (408)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-------------------------------
T ss_pred             EEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCC-ceE---eccccccccceeeccc
Confidence                   35566777788999999999999999999999999999999988776553 221   1122333 33445677


Q ss_pred             ECCCcEEEEEecCC
Q 015490          362 SMDSSVRVTVIEDK  375 (406)
Q Consensus       362 s~dg~i~iw~~~~~  375 (406)
                      +.|+.+++|+....
T Consensus       393 ~~~~~~~~W~~~~~  406 (408)
T 4a11_B          393 DEEGGTSAWSHPQF  406 (408)
T ss_dssp             --------------
T ss_pred             CccCceeecCCccc
Confidence            78999999987643

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=6.3e-29  Score=231.03  Aligned_cols=244  Identities=17%  Similarity=0.175  Sum_probs=195.9

Q ss_pred             CceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEE
Q 015490          115 LPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVF  194 (406)
Q Consensus       115 ~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vw  194 (406)
                      .+..|+|+++ ..|++|.|++++||+..  +++....+         ....+...|++++|+|+|++|++|+.||+|++|
T Consensus       107 y~~~l~wS~~-n~lAvgld~tV~lWd~~--tg~~~~~~---------~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iW  174 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVALDNSVYLWSAS--SGDILQLL---------QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW  174 (420)
T ss_dssp             TCBCEEECTT-SEEEEEETTEEEEEETT--TCCEEEEE---------ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             cceeEEECCC-CEEEEEeCCEEEEEECC--CCCEEEEE---------EecCCCCcEEEEEECCCCCEEEEEECCCeEEEE
Confidence            3678999986 47777779988886644  33322221         112244679999999999999999999999999


Q ss_pred             eCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeee-eecccCCcceEEEEEEEcCCCCceEEEEE
Q 015490          195 KWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVA-TPLAKENDELFASCRFSPLNNEDYVLYIA  273 (406)
Q Consensus       195 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  273 (406)
                      |+++++.+..+.+|...+.+++|+  +..|++++.|+.+++||....... ..+. .+...+..+.|+|++..      +
T Consensus       175 d~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~-~h~~~~~~~~~~~~g~~------l  245 (420)
T 4gga_A          175 DVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLS-GHSQEVCGLRWAPDGRH------L  245 (420)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEE-CCSSCEEEEEECTTSSE------E
T ss_pred             EcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEec-ccccceeeeeecCCCCe------e
Confidence            999999999999988889888875  679999999999999999875544 3444 45566889999999983      5


Q ss_pred             EEcCCCcEEEEEeCCCce----EEEEeeecCCCeEEEEEcCCC-CEEEEE--eCCCcEEEEECCCceEEEEeecccccce
Q 015490          274 AITDRGASIVTWNTTTWK----RIRTKQVVREPVSSFNVSADG-KLLAVG--TASGDISIIDSSSLQVRTAVKKAHLGIV  346 (406)
Q Consensus       274 ~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~i~~~~~sp~~-~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~v  346 (406)
                      ++++.|+.+++||..+++    .+.....|...|.+++|+|++ .+++++  +.|+.|++||+.+++....+.  +...+
T Consensus       246 ~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~--~~~~v  323 (420)
T 4gga_A          246 ASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD--AHSQV  323 (420)
T ss_dssp             EEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE--CSSCE
T ss_pred             eeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec--cccce
Confidence            677889999999998764    345667788899999999965 455554  469999999999999998885  55679


Q ss_pred             EEEEEcCCCCeEEEEE--CCCcEEEEEecCCcCCCCc
Q 015490          347 TALAFSYDSRALVSAS--MDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       347 ~~~~~sp~~~~l~s~s--~dg~i~iw~~~~~~~~~~~  381 (406)
                      .++.|+|+++.+++++  .|+.|+|||+.+++.+..+
T Consensus       324 ~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l  360 (420)
T 4gga_A          324 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL  360 (420)
T ss_dssp             EEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE
T ss_pred             eeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEE
Confidence            9999999999998776  7899999999998876544

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.4e-29  Score=227.44  Aligned_cols=259  Identities=13%  Similarity=0.138  Sum_probs=187.0

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeec--ccc
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQ--LEN  166 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  166 (406)
                      .+..|+....    +.+..+.  ...|.++.|+|+   +++++ |+.+++|+.+..    ....... ..+.+..  ..+
T Consensus        59 ~v~iwd~~~~----~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~----~~~~~~~-~~~~~~~~~~~~  124 (343)
T 3lrv_A           59 ALHFTQLKDS----KTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQ----ITILDSK-TNKVLREIEVDS  124 (343)
T ss_dssp             EEEEEEESSS----SCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTE----EEEEETT-TCCEEEEEECCC
T ss_pred             cEEEEECCCC----cEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCc----eEEeecC-CcceeEEeecCC
Confidence            4555565543    2444444  567888899998   66666 888888764421    1001110 1121222  234


Q ss_pred             cCcEEEEEECC--CCCEEEEeeCCCeEEEEeCCCcceEeeeeccCC-ceeEEEEccCCCEEEEEeCCCCEEEEEcCCCee
Q 015490          167 VGQQLALTFDS--EGTIFAAGSENGNLRVFKWPSLEIILNESEAHA-SVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAV  243 (406)
Q Consensus       167 ~~~v~~~~~s~--~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~  243 (406)
                      ...|.+++|+|  +++++++++.||+|++||+++++.......++. .|.+++|+|++++|++|+.|+.|++||+++++.
T Consensus       125 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~  204 (343)
T 3lrv_A          125 ANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQ  204 (343)
T ss_dssp             SSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTS
T ss_pred             CCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCC
Confidence            47899999999  999999999999999999999988665544444 899999999999999999999999999999988


Q ss_pred             e-eecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeee---cCCCe--EEEEEcCCCCEEEE
Q 015490          244 A-TPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQV---VREPV--SSFNVSADGKLLAV  317 (406)
Q Consensus       244 ~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~---~~~~i--~~~~~sp~~~~l~~  317 (406)
                      . ..+...|...+.+++|+|++..      +++++ ++.|++||+++.+.+..+..   +...+  .+++|+|+|++|++
T Consensus       205 ~~~~~~~~h~~~v~~l~fs~~g~~------l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~  277 (343)
T 3lrv_A          205 ASSRFPVDEEAKIKEVKFADNGYW------MVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIA  277 (343)
T ss_dssp             CCEECCCCTTSCEEEEEECTTSSE------EEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEE
T ss_pred             CccEEeccCCCCEEEEEEeCCCCE------EEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEE
Confidence            7 6676645678999999999984      33334 44999999998876544432   22233  46999999999999


Q ss_pred             EeC-CCcEEEEECCCceEEEEeecccccceEEEEEcC---CCCeEEEEECCCcEEEEEecC
Q 015490          318 GTA-SGDISIIDSSSLQVRTAVKKAHLGIVTALAFSY---DSRALVSASMDSSVRVTVIED  374 (406)
Q Consensus       318 ~~~-dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp---~~~~l~s~s~dg~i~iw~~~~  374 (406)
                      ++. |+.|++|++.+.......     .++..++|.+   +.+.+++++.|+.+.++-...
T Consensus       278 ~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~  333 (343)
T 3lrv_A          278 YSNESNSLTIYKFDKKTKNWTK-----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN  333 (343)
T ss_dssp             EETTTTEEEEEEECTTTCSEEE-----EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred             ecCCCCcEEEEEEcccccceEe-----cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence            998 999999999765432221     4677888888   888999999999998886543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=8.8e-29  Score=229.62  Aligned_cols=222  Identities=11%  Similarity=0.122  Sum_probs=173.0

Q ss_pred             cCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccC-----cEEEEEECCCCCEEEE
Q 015490          111 TDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVG-----QQLALTFDSEGTIFAA  184 (406)
Q Consensus       111 ~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~s~~g~~l~~  184 (406)
                      .|...|.+++|||+|..|++++ ++.++||+.+.                .+..+.++.     .+.+++|||||++||+
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~----------------~l~~l~~~~~~~~~sv~svafSPDG~~LAs  146 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK----------------MLTNLDSKGNLSSRTYHCFEWNPIESSIVV  146 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE----------------EEEECCCSSCSTTTCEEEEEECSSSSCEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc----------------eeeeccCCCccccccEEEEEEcCCCCEEEE
Confidence            5688999999999999999988 99999986211                222233222     5999999999999999


Q ss_pred             eeCCCeEEEEeCCCcce-------Eeee----eccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeee---eecccC
Q 015490          185 GSENGNLRVFKWPSLEI-------ILNE----SEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVA---TPLAKE  250 (406)
Q Consensus       185 ~~~dg~i~vwd~~~~~~-------~~~~----~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~---~~~~~~  250 (406)
                      |+.||+|++||+.++..       +..+    .+|...|.+++|+|||  +++++.|+++++||+.++...   ..+...
T Consensus       147 gs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~  224 (588)
T 2j04_A          147 GNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNA  224 (588)
T ss_dssp             EETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECC
T ss_pred             EcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeeccc
Confidence            99999999999988752       4444    4555699999999999  888999999999999887732   345434


Q ss_pred             CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEE--cCCCCEEEEEeCCCcEEEEE
Q 015490          251 NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNV--SADGKLLAVGTASGDISIID  328 (406)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~--sp~~~~l~~~~~dg~i~i~d  328 (406)
                      +...|.+++|+  +.      .+++++ ++.|++||+.+++......+|...+..+.|  +|++..|+++++||+ ++|.
T Consensus       225 h~~~V~svaFs--g~------~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~  294 (588)
T 2j04_A          225 SRRKITDLKIV--DY------KVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLL  294 (588)
T ss_dssp             CSSCCCCEEEE--TT------EEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEE
T ss_pred             ccCcEEEEEEE--CC------EEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEe
Confidence            55678899999  44      234444 589999999988774444478899999999  999999999999999 9998


Q ss_pred             CCCce-----------------------EEEEeecccccceEEEEEcCCCCeEEEEE
Q 015490          329 SSSLQ-----------------------VRTAVKKAHLGIVTALAFSYDSRALVSAS  362 (406)
Q Consensus       329 ~~~~~-----------------------~~~~~~~~~~~~v~~~~~sp~~~~l~s~s  362 (406)
                      .+.-.                       ....+  .+...|.+++|||||+.+|+++
T Consensus       295 ~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~--~~~~~I~~va~SPdG~~lA~~~  349 (588)
T 2j04_A          295 EDELHVTADNIIAPYLEKKFKKWSTIWNEFNNY--ETTLVIHGISLSPDGYSIAIVY  349 (588)
T ss_dssp             SSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSS--CCEEEEEEEEECTTSSEEEEEE
T ss_pred             eccEEECCCceEEEEcCCEEEEEECCCCceeee--ccceEEEEEEECCCCCEEEEEE
Confidence            75211                       11111  1245589999999999999886

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=4.6e-29  Score=232.64  Aligned_cols=208  Identities=14%  Similarity=0.236  Sum_probs=176.7

Q ss_pred             eecccccCcEEEEEECCC-CCEEEEeeCCCeEEEEeCCC----------cceEeeeeccCCceeEEEEccCCC-EEEEEe
Q 015490          161 LSQLENVGQQLALTFDSE-GTIFAAGSENGNLRVFKWPS----------LEIILNESEAHASVKDLSFSPDGK-FLVSLG  228 (406)
Q Consensus       161 ~~~~~~~~~v~~~~~s~~-g~~l~~~~~dg~i~vwd~~~----------~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~s  228 (406)
                      ...+.|.+.|++++|+|+ +.+|++++.||.|++||+.+          ......+..|...|.+++|+|++. +|++++
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            445667789999999997 68999999999999999976          566677778888999999999988 999999


Q ss_pred             CCCCEEEEEcCCCee-------eeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc---eEEEEeee
Q 015490          229 NRGPGRVWDLASSAV-------ATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW---KRIRTKQV  298 (406)
Q Consensus       229 ~d~~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~---~~~~~~~~  298 (406)
                      .||.|++||+.++..       ...+. .+...+.+++|+|++..     ++++++.++.|++||+++.   +.+..+..
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~-----~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~  275 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFT-GHTAVVEDVAWHLLHES-----LFGSVADDQKLMIWDTRNNNTSKPSHTVDA  275 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEEC-CCSSCEEEEEECSSCTT-----EEEEEETTSEEEEEETTCSCSSSCSEEEEC
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeec-CCCCCEeeeEEeCCCCC-----EEEEEeCCCeEEEEECCCCCCCcceeEeec
Confidence            999999999987432       22232 35567999999997665     5667778999999999987   56777788


Q ss_pred             cCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCC-ceEEEEeecccccceEEEEEcCCCC-eEEEEECCCcEEEEEecCC
Q 015490          299 VREPVSSFNVSADGK-LLAVGTASGDISIIDSSS-LQVRTAVKKAHLGIVTALAFSYDSR-ALVSASMDSSVRVTVIEDK  375 (406)
Q Consensus       299 ~~~~i~~~~~sp~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~s~dg~i~iw~~~~~  375 (406)
                      |...|.+++|+|++. ++++|+.||.|++||+++ ...+..+. .|...|.+++|+|+++ +|++++.|+.|++||+...
T Consensus       276 ~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~-~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~  354 (430)
T 2xyi_A          276 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE-SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI  354 (430)
T ss_dssp             CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE-CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred             CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee-cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Confidence            889999999999987 688999999999999998 45666665 7999999999999985 5899999999999999874

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=8.6e-29  Score=225.51  Aligned_cols=224  Identities=15%  Similarity=0.132  Sum_probs=168.7

Q ss_pred             CccEEEEEEecCCCCcccc---ceeEEecCCCCceEEEEccCCCeEEEEe---cCCeEEEEEecccccceeecceeccce
Q 015490           86 RNAVLLSHFDFASNSLSDQ---PVAELRTDSDLPYRMAIHPHGDGIICAL---QNSCRLFEWDEVENTEIRRLGVKISEK  159 (406)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~---~~~~~~~h~~~v~~~~~sp~~~~l~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~  159 (406)
                      .+.+.++.++.....+...   .......+...+.+++|+|||+++++++   |+.++||+.  .+            .+
T Consensus       103 d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~--~~------------~~  168 (365)
T 4h5i_A          103 NKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDP--SD------------LT  168 (365)
T ss_dssp             CCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEET--TT------------TE
T ss_pred             CCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeEC--CC------------Cc
Confidence            3456677766554332111   1112234556789999999999987654   566666654  32            33


Q ss_pred             eeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEee--eeccCCceeEEEEccCCCEEEEEeCCC----CE
Q 015490          160 VLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILN--ESEAHASVKDLSFSPDGKFLVSLGNRG----PG  233 (406)
Q Consensus       160 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~s~s~d~----~i  233 (406)
                      ....+.++..|.+++|+|||+++++++.+ .+.+|+..+++....  ...|...|.+++|+|+++++++++.|+    .+
T Consensus       169 ~~~~~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i  247 (365)
T 4h5i_A          169 EKFEIETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVL  247 (365)
T ss_dssp             EEEEEECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEE
T ss_pred             EEEEeCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEE
Confidence            34445677889999999999999999865 566677666665533  234555899999999999999999887    58


Q ss_pred             EEEEcCCCeee----eecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEe-eecCCCeEEEEE
Q 015490          234 RVWDLASSAVA----TPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTK-QVVREPVSSFNV  308 (406)
Q Consensus       234 ~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~i~~~~~  308 (406)
                      ++|++......    ..+. .+...|.+++|+|+++      ++++++.|+.|++||+++++++..+ .+|...|++++|
T Consensus       248 ~~~~~~~~~~~~~~~~~~~-~~~~~V~~~~~Spdg~------~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~f  320 (365)
T 4h5i_A          248 TKISIKSGNTSVLRSKQVT-NRFKGITSMDVDMKGE------LAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTI  320 (365)
T ss_dssp             EEEEEETTEEEEEEEEEEE-SSCSCEEEEEECTTSC------EEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEE
T ss_pred             eecccccceecceeeeeec-CCCCCeEeEEECCCCC------ceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEE
Confidence            88998776542    2233 3455689999999998      4677788999999999999998875 689999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCC
Q 015490          309 SADGKLLAVGTASGDISIIDSSS  331 (406)
Q Consensus       309 sp~~~~l~~~~~dg~i~i~d~~~  331 (406)
                      +|||++|++|+.|++|+|||+..
T Consensus       321 Spdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          321 SPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             CTTSCEEEEEETTSEEEEEECCT
T ss_pred             CCCCCEEEEEeCCCeEEEEEcCC
Confidence            99999999999999999999964

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=7.7e-28  Score=218.48  Aligned_cols=236  Identities=15%  Similarity=0.099  Sum_probs=177.6

Q ss_pred             CCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeE
Q 015490          114 DLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNL  191 (406)
Q Consensus       114 ~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i  191 (406)
                      ..+..+++.+++..++.++  ++.++||+.  .+            .+.+..+.++..|.++.|+++.  ++++ .|+.|
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~--~~------------~~~~~~~~~~~~v~~v~~~~~~--~~~~-~~~~i  121 (355)
T 3vu4_A           59 RHLSKVRMLHRTNYVAFVTGVKEVVHIWDD--VK------------KQDVSRIKVDAPVKDLFLSREF--IVVS-YGDVI  121 (355)
T ss_dssp             SCCCEEEECTTSSEEEEECSSTTEEEEEET--TT------------TEEEEEEECSSCEEEEEECSSE--EEEE-ETTEE
T ss_pred             CCeEEEEEcCCCCEEEEEECCccEEEEEEC--CC------------CcEEEEEECCCceEEEEEcCCE--EEEE-EcCEE
Confidence            3588999999999886544  556666554  32            3334445567789999999874  4333 47899


Q ss_pred             EEEeCCCc-ceEeeeeccCCceeEEEEccCCCEEEE--EeCCCCEEEEEcCCCe----------------eeeecccCCc
Q 015490          192 RVFKWPSL-EIILNESEAHASVKDLSFSPDGKFLVS--LGNRGPGRVWDLASSA----------------VATPLAKEND  252 (406)
Q Consensus       192 ~vwd~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~s--~s~d~~i~iwd~~~~~----------------~~~~~~~~~~  252 (406)
                      ++||+.++ +.+..+..   ....+++++  .++++  ++.||.|++||+++++                ....+.. |.
T Consensus       122 ~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~-h~  195 (355)
T 3vu4_A          122 SVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKA-HT  195 (355)
T ss_dssp             EEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECC-CS
T ss_pred             EEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEc-cC
Confidence            99999988 65555544   344566676  56666  4789999999998865                1444554 46


Q ss_pred             ceEEEEEEEcCCCCceEEEEEEEcCCCcE-EEEEeCCCceEEEEee-e-cCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 015490          253 ELFASCRFSPLNNEDYVLYIAAITDRGAS-IVTWNTTTWKRIRTKQ-V-VREPVSSFNVSADGKLLAVGTASGDISIIDS  329 (406)
Q Consensus       253 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-i~~~d~~~~~~~~~~~-~-~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~  329 (406)
                      ..+.+++|+|+++      .+++++.|++ |++||+++++.+..+. + |...|.+++|+|++++|++++.|++|++||+
T Consensus       196 ~~v~~~~~s~~g~------~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~  269 (355)
T 3vu4_A          196 NPIKMVRLNRKSD------MVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEI  269 (355)
T ss_dssp             SCEEEEEECTTSS------EEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEES
T ss_pred             CceEEEEECCCCC------EEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEc
Confidence            6799999999998      4677788997 9999999999999998 4 8899999999999999999999999999999


Q ss_pred             CCceEEE--E--------------------eecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCC
Q 015490          330 SSLQVRT--A--------------------VKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKS  378 (406)
Q Consensus       330 ~~~~~~~--~--------------------~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~  378 (406)
                      .......  .                    +...+......++|++++++|++++.||.+++|++..++..
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~~  340 (355)
T 3vu4_A          270 FNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDEM  340 (355)
T ss_dssp             SCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETTT
T ss_pred             cCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCCC
Confidence            7643111  1                    11111223467999999999999999999999999876653

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=2.7e-27  Score=220.78  Aligned_cols=274  Identities=14%  Similarity=0.078  Sum_probs=205.2

Q ss_pred             EEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccccc
Q 015490           89 VLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV  167 (406)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (406)
                      +.++.++.....+  +.+..+..+ ..+.+++|+|++..+++++ ++.+++|+  ..+++.......      .....+.
T Consensus       101 ~~l~~~d~~~~~~--~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d--~~~g~~~~~~~~------~~~~~~~  169 (433)
T 3bws_A          101 EKLIALDKEGITH--RFISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLD--INSGQTVRLSPP------EKYKKKL  169 (433)
T ss_dssp             TCEEECCBTTCSE--EEEEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEE--TTTCCEEEECCC------HHHHTTC
T ss_pred             eEEEEECCCCCcc--eEEEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEE--CCCCeEeeecCc------ccccccC
Confidence            3566666644321  344555544 4566999999555555554 55566655  443433221110      0011344


Q ss_pred             CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEe-CCCCEEEEEcCCCeeeee
Q 015490          168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLG-NRGPGRVWDLASSAVATP  246 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s-~d~~i~iwd~~~~~~~~~  246 (406)
                      ..+.+++|+++++++++++.|+.|++||+++++....+..+...+.+++|+|+++++++++ .|+.|++||+++++....
T Consensus       170 ~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~  249 (433)
T 3bws_A          170 GFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRK  249 (433)
T ss_dssp             CEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEE
Confidence            7899999999999999999999999999999998888877777999999999999886554 799999999999988887


Q ss_pred             cccCCcceEEEEEEEcCCCCceEEEEEEEcC-----CCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEE-EEEeC
Q 015490          247 LAKENDELFASCRFSPLNNEDYVLYIAAITD-----RGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLL-AVGTA  320 (406)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l-~~~~~  320 (406)
                      +..+  ..+.+++|+|+++.   +++.....     .++.|++||+++++.+..+. +...+.+++|+|+++.+ ++++.
T Consensus       250 ~~~~--~~~~~~~~~~~g~~---l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~  323 (433)
T 3bws_A          250 TDKI--GLPRGLLLSKDGKE---LYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMC  323 (433)
T ss_dssp             CCCC--SEEEEEEECTTSSE---EEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETT
T ss_pred             ecCC--CCceEEEEcCCCCE---EEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecC
Confidence            7653  34789999999984   22222211     58899999999988777664 34578999999999765 55578


Q ss_pred             CCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEEC---------------CCcEEEEEecCCcCCCCc
Q 015490          321 SGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASM---------------DSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       321 dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~---------------dg~i~iw~~~~~~~~~~~  381 (406)
                      ++.|++||+.+++....+.  +...+.+++|+|+|++|++++.               ||.|++||+.+++.+..+
T Consensus       324 ~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~  397 (433)
T 3bws_A          324 CSKIEVYDLKEKKVQKSIP--VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW  397 (433)
T ss_dssp             TTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEECCCCcEEEEec--CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEe
Confidence            9999999999999888775  7778999999999999988876               579999999988765433

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.96  E-value=2e-27  Score=212.11  Aligned_cols=244  Identities=16%  Similarity=0.145  Sum_probs=192.6

Q ss_pred             ceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEe
Q 015490          116 PYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFK  195 (406)
Q Consensus       116 v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd  195 (406)
                      ..+|+||+++ .|++|.|++++||+.+  +++....+         ....|...|.+++|+|++++|++|+.||+|++||
T Consensus        28 ~~~l~WS~~~-~lAvg~D~tV~iWd~~--tg~~~~~~---------~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~   95 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVALDNSVYLWSAS--SGDILQLL---------QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWD   95 (318)
T ss_dssp             CBCEEECTTS-EEEEEETTEEEEEETT--TCCEEEEE---------ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ceEEEECCCC-EEEEEeCCEEEEEECC--CCCEEEEE---------EecCCCCeEEEEEECCCCCEEEEEECCCcEEEee
Confidence            4789999986 7777779988887654  33322221         1123446799999999999999999999999999


Q ss_pred             CCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEE
Q 015490          196 WPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAI  275 (406)
Q Consensus       196 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  275 (406)
                      +++++.+..+.+|...+.++.+  ++..+++++.++.+++|+.............+...+..+.+.++++.      +++
T Consensus        96 ~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------l~s  167 (318)
T 4ggc_A           96 VQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH------LAS  167 (318)
T ss_dssp             TTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSE------EEE
T ss_pred             cCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCE------EEE
Confidence            9999999998888877766554  56799999999999999998765544333345667889999999983      566


Q ss_pred             cCCCcEEEEEeCCCceE----EEEeeecCCCeEEEEEcCCCCEE---EEEeCCCcEEEEECCCceEEEEeecccccceEE
Q 015490          276 TDRGASIVTWNTTTWKR----IRTKQVVREPVSSFNVSADGKLL---AVGTASGDISIIDSSSLQVRTAVKKAHLGIVTA  348 (406)
Q Consensus       276 ~~~~~~i~~~d~~~~~~----~~~~~~~~~~i~~~~~sp~~~~l---~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~  348 (406)
                      ++.|+.|++||+++++.    ......+.+.|.++.++|++..+   ++++.++.|++||...........  +...+..
T Consensus       168 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~--~~~~v~~  245 (318)
T 4ggc_A          168 GGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD--AHSQVCS  245 (318)
T ss_dssp             EETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE--CSSCEEE
T ss_pred             EecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc--ceeeeee
Confidence            77899999999987653    34455567889999999976533   355678999999999888777764  7788999


Q ss_pred             EEEcCCCCeEEEEE--CCCcEEEEEecCCcCCCCc
Q 015490          349 LAFSYDSRALVSAS--MDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       349 ~~~sp~~~~l~s~s--~dg~i~iw~~~~~~~~~~~  381 (406)
                      +.|+|++..+++++  .|+.|++||+++++.+..+
T Consensus       246 ~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l  280 (318)
T 4ggc_A          246 ILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL  280 (318)
T ss_dssp             EEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE
T ss_pred             eeecccccceEEEEEcCCCEEEEEECCCCcEEEEE
Confidence            99999999888765  7999999999998876544

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.96  E-value=8.3e-28  Score=218.77  Aligned_cols=207  Identities=17%  Similarity=0.233  Sum_probs=167.4

Q ss_pred             ccCcEEEEEECCC---CCEEEEeeCCCeEEEEeCCC-cceE-eeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCC
Q 015490          166 NVGQQLALTFDSE---GTIFAAGSENGNLRVFKWPS-LEII-LNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLAS  240 (406)
Q Consensus       166 ~~~~v~~~~~s~~---g~~l~~~~~dg~i~vwd~~~-~~~~-~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~  240 (406)
                      |.+.|.+++|+|+   |++|++|+.||.|++||+.+ +... ..+..|...|.+++|+|++++|++++.|+.|++||+++
T Consensus        38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~  117 (368)
T 3mmy_A           38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSS  117 (368)
T ss_dssp             CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCC
Confidence            4589999999999   69999999999999999987 5554 56777888999999999999999999999999999999


Q ss_pred             CeeeeecccCCcceEEEEEE--EcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC------------------
Q 015490          241 SAVATPLAKENDELFASCRF--SPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR------------------  300 (406)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~------------------  300 (406)
                      ++.....  .+...+.+++|  ++++.      .+++++.|+.|++||+++++.+..+..+.                  
T Consensus       118 ~~~~~~~--~~~~~v~~~~~~~~~~~~------~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (368)
T 3mmy_A          118 NQAIQIA--QHDAPVKTIHWIKAPNYS------CVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAE  189 (368)
T ss_dssp             TEEEEEE--ECSSCEEEEEEEECSSCE------EEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGG
T ss_pred             CCceeec--cccCceEEEEEEeCCCCC------EEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCC
Confidence            8877643  35667899999  66665      35566789999999999887666555432                  


Q ss_pred             -----------------------CCeEEEEEcCCCCE----EEEEeCCCcEEEEECCCc---eEEEEeeccccc------
Q 015490          301 -----------------------EPVSSFNVSADGKL----LAVGTASGDISIIDSSSL---QVRTAVKKAHLG------  344 (406)
Q Consensus       301 -----------------------~~i~~~~~sp~~~~----l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~------  344 (406)
                                             ....++++.++...    +++++.||.|++||++..   .....+. .|..      
T Consensus       190 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~-~~~~~~~~~~  268 (368)
T 3mmy_A          190 RGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFK-CHRSNGTNTS  268 (368)
T ss_dssp             GCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEE-CSEEC----C
T ss_pred             CcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeee-eeeccccccc
Confidence                                   23344555444433    999999999999999876   4455554 5655      


Q ss_pred             ------ceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490          345 ------IVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       345 ------~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~  381 (406)
                            .|.+++|+|++++|++++.||.|++||+++++.+..+
T Consensus       269 ~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~  311 (368)
T 3mmy_A          269 APQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS  311 (368)
T ss_dssp             CCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred             ccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe
Confidence                  7999999999999999999999999999988765443

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=2.9e-26  Score=210.90  Aligned_cols=211  Identities=18%  Similarity=0.194  Sum_probs=175.5

Q ss_pred             eeecccccCcEEEEEECCCCCEE-EEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEe-CCCCEEEEE
Q 015490          160 VLSQLENVGQQLALTFDSEGTIF-AAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLG-NRGPGRVWD  237 (406)
Q Consensus       160 ~~~~~~~~~~v~~~~~s~~g~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s-~d~~i~iwd  237 (406)
                      ....+.++..+.+++|+|+++++ ++++.|+.|++||+.+++....+..+. .+.+++|+|++++|++++ .++.|++||
T Consensus        24 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d  102 (391)
T 1l0q_A           24 VTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVID  102 (391)
T ss_dssp             EEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEE
Confidence            34445566779999999999876 677789999999999998887766554 899999999999886554 679999999


Q ss_pred             cCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEE-E
Q 015490          238 LASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLL-A  316 (406)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l-~  316 (406)
                      +.+++....+..+  ..+.+++|+|+++.     +++++..++.|++||+.+++.+..+..+ ..+.+++|+|++++| +
T Consensus       103 ~~~~~~~~~~~~~--~~~~~~~~s~dg~~-----l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~  174 (391)
T 1l0q_A          103 TTSNTVAGTVKTG--KSPLGLALSPDGKK-----LYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYV  174 (391)
T ss_dssp             TTTTEEEEEEECS--SSEEEEEECTTSSE-----EEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEE
T ss_pred             CCCCeEEEEEeCC--CCcceEEECCCCCE-----EEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEE
Confidence            9999888777643  34789999999985     4456678999999999999988888765 457999999999988 5


Q ss_pred             EEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEE---CCCcEEEEEecCCcCCCCc
Q 015490          317 VGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSAS---MDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       317 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s---~dg~i~iw~~~~~~~~~~~  381 (406)
                      +++.++.|++||+.+++....+.  +...+.+++|+|++++|++++   .++.|++||+.+++.+..+
T Consensus       175 ~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~  240 (391)
T 1l0q_A          175 ANFDSMSISVIDTVTNSVIDTVK--VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI  240 (391)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEE--CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE
T ss_pred             EeCCCCEEEEEECCCCeEEEEEe--cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEE
Confidence            66778999999999998888775  667889999999999998887   6899999999988765433

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.7e-27  Score=236.94  Aligned_cols=203  Identities=14%  Similarity=0.162  Sum_probs=176.1

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCC--CcceEeeeeccCCceeEEEEccC--CCEEEEEeCCCCEEEEEcCCC
Q 015490          166 NVGQQLALTFDSEGTIFAAGSENGNLRVFKWP--SLEIILNESEAHASVKDLSFSPD--GKFLVSLGNRGPGRVWDLASS  241 (406)
Q Consensus       166 ~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~i~~~~~s~~--~~~l~s~s~d~~i~iwd~~~~  241 (406)
                      |.+.|++++|+|++++|++|+.||.|++||+.  +++....+.+|...|++++|+|+  +++|++++.||.|++||+.++
T Consensus         8 H~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~   87 (753)
T 3jro_A            8 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG   87 (753)
T ss_dssp             CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT
T ss_pred             CcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC
Confidence            55889999999999999999999999999997  55667778888889999999988  999999999999999999988


Q ss_pred             e--eeeecccCCcceEEEEEEEcC--CCCceEEEEEEEcCCCcEEEEEeCCCc--eEEEEeeecCCCeEEEEEcC-----
Q 015490          242 A--VATPLAKENDELFASCRFSPL--NNEDYVLYIAAITDRGASIVTWNTTTW--KRIRTKQVVREPVSSFNVSA-----  310 (406)
Q Consensus       242 ~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~i~~~~~sp-----  310 (406)
                      +  ....+.. +...+.+++|+|+  +.      .+++++.|+.|++||++++  .....+..|...|.+++|+|     
T Consensus        88 ~~~~~~~~~~-h~~~V~~v~~sp~~~~~------~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~  160 (753)
T 3jro_A           88 RWSQIAVHAV-HSASVNSVQWAPHEYGP------LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  160 (753)
T ss_dssp             EEEEEEEECC-CSSCEEEEEECCGGGCS------EEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred             cccccccccC-CCCCeEEEEECCCCCCC------EEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence            6  4444443 4567999999999  66      4566778999999999876  33455677889999999999     


Q ss_pred             --------CCCEEEEEeCCCcEEEEECCCc----eEEEEeecccccceEEEEEcCC---CCeEEEEECCCcEEEEEecCC
Q 015490          311 --------DGKLLAVGTASGDISIIDSSSL----QVRTAVKKAHLGIVTALAFSYD---SRALVSASMDSSVRVTVIEDK  375 (406)
Q Consensus       311 --------~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~~v~~~~~sp~---~~~l~s~s~dg~i~iw~~~~~  375 (406)
                              +++++++|+.||.|++||++++    .....+. +|...|.+++|+|+   +++|++++.||.|++||+.++
T Consensus       161 ~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~  239 (753)
T 3jro_A          161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  239 (753)
T ss_dssp             ------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred             ccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeec-CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence                    5899999999999999999876    4555554 89999999999999   899999999999999999986


Q ss_pred             c
Q 015490          376 K  376 (406)
Q Consensus       376 ~  376 (406)
                      +
T Consensus       240 ~  240 (753)
T 3jro_A          240 Q  240 (753)
T ss_dssp             S
T ss_pred             C
Confidence            4

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=1.3e-27  Score=219.99  Aligned_cols=201  Identities=12%  Similarity=0.078  Sum_probs=142.6

Q ss_pred             EEEECCCCCEEEEeeCCCeEEEEeCCCcceEe-----eeeccCCceeEEEEcc--------CCCEEEEEeCCCCEEEEEc
Q 015490          172 ALTFDSEGTIFAAGSENGNLRVFKWPSLEIIL-----NESEAHASVKDLSFSP--------DGKFLVSLGNRGPGRVWDL  238 (406)
Q Consensus       172 ~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~-----~~~~~~~~i~~~~~s~--------~~~~l~s~s~d~~i~iwd~  238 (406)
                      ...+++++.+|++++.|++|++||.++++...     .+.+|...|++++|+|        |+++|++++.|++|+|||+
T Consensus        94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~  173 (393)
T 4gq1_A           94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRL  173 (393)
T ss_dssp             ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEE
T ss_pred             eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEEC
Confidence            33445567789999999999999998876432     3567888999999998        8899999999999999999


Q ss_pred             CCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEe----------------------
Q 015490          239 ASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTK----------------------  296 (406)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~----------------------  296 (406)
                      +++.....+..++ ..+.+++|+|++..     .+++++.|+.|++||+++++.....                      
T Consensus       174 ~~~~~~~~~~~~~-~~v~~v~~~p~~~~-----~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  247 (393)
T 4gq1_A          174 TDEGPILAGYPLS-SPGISVQFRPSNPN-----QLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNT  247 (393)
T ss_dssp             ETTEEEEEEEECS-SCEEEEEEETTEEE-----EEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC--
T ss_pred             CCCceeeeecCCC-CCcEEEEECCCCCc-----eEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceee
Confidence            9888777666554 45789999998864     5677789999999999887654322                      


Q ss_pred             ---eecCCCeEEEEEc-CCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEE------------------EcC-
Q 015490          297 ---QVVREPVSSFNVS-ADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALA------------------FSY-  353 (406)
Q Consensus       297 ---~~~~~~i~~~~~s-p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~------------------~sp-  353 (406)
                         ..|...+.++.|+ |+++.|++++.|+++++||+..++....+. .|...+..+.                  |+| 
T Consensus       248 ~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (393)
T 4gq1_A          248 CHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEIS-DSTMKLGPKNLLPNVQGISLFPSLLGACPHPR  326 (393)
T ss_dssp             ----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred             eecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEe-eecCccccEEEccccccccccCcceeEEEccC
Confidence               2345567788886 799999999999999999998877665553 4444443333                  333 


Q ss_pred             -CCCeEEEEECCCcEEEEEecCCcCCC
Q 015490          354 -DSRALVSASMDSSVRVTVIEDKKKSG  379 (406)
Q Consensus       354 -~~~~l~s~s~dg~i~iw~~~~~~~~~  379 (406)
                       ++.++++|+.||+|++||+.+++...
T Consensus       327 ~~~~~~~sgs~Dg~V~lwd~~~~~~~~  353 (393)
T 4gq1_A          327 YMDYFATAHSQHGLIQLINTYEKDSNS  353 (393)
T ss_dssp             CTTEEEEEETTTTEEEEEETTCTTCCE
T ss_pred             CCCEEEEEECCCCEEEEEECCCCcEEE
Confidence             34466788899999999999887643

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=1e-26  Score=203.08  Aligned_cols=207  Identities=10%  Similarity=0.021  Sum_probs=144.5

Q ss_pred             CCCCceEEEEccC----CCeEEEEecCCeEEEEEecccccce-----------eecceeccceeeecccc-cCcEEEEEE
Q 015490          112 DSDLPYRMAIHPH----GDGIICALQNSCRLFEWDEVENTEI-----------RRLGVKISEKVLSQLEN-VGQQLALTF  175 (406)
Q Consensus       112 h~~~v~~~~~sp~----~~~l~~~~~~~~~i~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~-~~~v~~~~~  175 (406)
                      |...|.+++++|+    +..+++++ ..+++|.+.  +++.+           +.+.+.+..+.+..+.. ...+..++|
T Consensus       110 ~~~~v~sla~spd~~~~~~~l~s~g-~~~~v~~l~--~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~f  186 (356)
T 2w18_A          110 EIREIRALFCSSDDESEKQVLLKSG-NIKAVLGLT--KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTF  186 (356)
T ss_dssp             SEEEEEEECC------CCEEEEEEE-EEEEEEEET--TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEE
T ss_pred             cccceEEEEECCCccccccEEEeCC-CeEEEEecC--CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEe
Confidence            3457888888888    77777765 335565542  22222           12222223333333333 356778888


Q ss_pred             CC---CCCEEEEeeCCCeEEEEeCCCcceEeeeeccCC---ceeEEEEccCCCEE------------EEEeCCCCEEEEE
Q 015490          176 DS---EGTIFAAGSENGNLRVFKWPSLEIILNESEAHA---SVKDLSFSPDGKFL------------VSLGNRGPGRVWD  237 (406)
Q Consensus       176 s~---~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~---~i~~~~~s~~~~~l------------~s~s~d~~i~iwd  237 (406)
                      ++   ++.+|++|+.|++|+|||+.+++++..+.+|+.   .+.+++|+|+|+++            ++++.|++|++||
T Consensus       187 s~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd  266 (356)
T 2w18_A          187 AEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVIN  266 (356)
T ss_dssp             EEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEE
T ss_pred             eccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEE
Confidence            88   679999999999999999999999998876554   67788999999876            5677899999999


Q ss_pred             cCCCeeeeec----ccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeE-EEEEcCCC
Q 015490          238 LASSAVATPL----AKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVS-SFNVSADG  312 (406)
Q Consensus       238 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~-~~~~sp~~  312 (406)
                      ..+++.+..+    ...+...+.+..++  +.      ++++++.|++|++||+.+++++.++.+|...+. +++|+|||
T Consensus       267 ~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~------~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG  338 (356)
T 2w18_A          267 PKTTLSVGVMLYCLPPGQAGRFLEGDVK--DH------CAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTD  338 (356)
T ss_dssp             TTTTEEEEEEEECCCTTCCCCEEEEEEE--TT------EEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSS
T ss_pred             CCCCEEEEEEEeeccCCCcceeEccccC--CC------EEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCC
Confidence            9999887654    11222223233333  33      467778899999999999999999998876544 68999999


Q ss_pred             CEEEEEeCCCcEEEEEC
Q 015490          313 KLLAVGTASGDISIIDS  329 (406)
Q Consensus       313 ~~l~~~~~dg~i~i~d~  329 (406)
                      ++|++|+.|++|+|||+
T Consensus       339 ~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          339 SHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             SEEEEECTTSCEEEEEE
T ss_pred             CEEEEEECCCcEEEecC
Confidence            99999999999999995

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=5e-25  Score=210.29  Aligned_cols=263  Identities=12%  Similarity=0.088  Sum_probs=199.3

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccC
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVG  168 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (406)
                      .+..||....    +.+.++..+.. +.+++|+|||++|++++ ++.+++|+.+..++            +.+..+....
T Consensus       160 ~V~v~D~~t~----~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~------------~~~~~i~~g~  222 (543)
T 1nir_A          160 QIALVDGDSK----KIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEP------------TKVAEIKIGI  222 (543)
T ss_dssp             EEEEEETTTC----CEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSC------------EEEEEEECCS
T ss_pred             eEEEEECCCc----eEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCC------------cEEEEEecCC
Confidence            5566776653    45667774333 89999999999999987 66666655421322            2333444556


Q ss_pred             cEEEEEECC----CCCEEEEeeC-CCeEEEEeCCCcceEeeeecc----------CC-ceeEEEEccCCCE-EEEEeCCC
Q 015490          169 QQLALTFDS----EGTIFAAGSE-NGNLRVFKWPSLEIILNESEA----------HA-SVKDLSFSPDGKF-LVSLGNRG  231 (406)
Q Consensus       169 ~v~~~~~s~----~g~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~----------~~-~i~~~~~s~~~~~-l~s~s~d~  231 (406)
                      .+..++|+|    ||+++++++. +++|.+||..+++.+..+..+          .. .+.++.++|++.. +++...++
T Consensus       223 ~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g  302 (543)
T 1nir_A          223 EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG  302 (543)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred             CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCC
Confidence            789999999    9999999885 899999999999888776542          22 6889999998765 55566789


Q ss_pred             CEEEEEcCCCeeee--ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeee----cCCCeEE
Q 015490          232 PGRVWDLASSAVAT--PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQV----VREPVSS  305 (406)
Q Consensus       232 ~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~----~~~~i~~  305 (406)
                      .|.+||+.+.+.+.  .+.  ....+..+.|+|++++     ++++...++.|.+||..+++++..+..    |.+....
T Consensus       303 ~i~vvd~~~~~~l~~~~i~--~~~~~~~~~~spdg~~-----l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~  375 (543)
T 1nir_A          303 KVLLVNYKDIDNLTVTSIG--AAPFLHDGGWDSSHRY-----FMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGAN  375 (543)
T ss_dssp             EEEEEECTTSSSCEEEEEE--CCSSCCCEEECTTSCE-----EEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEE
T ss_pred             eEEEEEecCCCcceeEEec--cCcCccCceECCCCCE-----EEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcc
Confidence            99999998866443  332  3344668999999985     455556788999999999999888774    4333333


Q ss_pred             EEEcCC-CCEEEEEe-CCCcEEEEECCC-------ceEEEEeecccccceEEEEEcCCCCeEEEEE-------CCCcEEE
Q 015490          306 FNVSAD-GKLLAVGT-ASGDISIIDSSS-------LQVRTAVKKAHLGIVTALAFSYDSRALVSAS-------MDSSVRV  369 (406)
Q Consensus       306 ~~~sp~-~~~l~~~~-~dg~i~i~d~~~-------~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s-------~dg~i~i  369 (406)
                      + ++|+ +..++++. .|++|.+||+.+       ++.+.++. .|.+.+..+.++|+|++|++++       .+++|.+
T Consensus       376 ~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~-~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v  453 (543)
T 1nir_A          376 F-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ-GQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAV  453 (543)
T ss_dssp             E-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE-CSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEE
T ss_pred             c-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEE-cCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEE
Confidence            3 4777 66666665 589999999998       88999986 7888889999999999999987       2779999


Q ss_pred             EEecCCcCC
Q 015490          370 TVIEDKKKS  378 (406)
Q Consensus       370 w~~~~~~~~  378 (406)
                      ||+.+++..
T Consensus       454 ~d~~~~~~~  462 (543)
T 1nir_A          454 FDLKNLDAK  462 (543)
T ss_dssp             EETTCTTSC
T ss_pred             EECCCCCCC
Confidence            999998875

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=6.2e-25  Score=203.41  Aligned_cols=259  Identities=14%  Similarity=0.128  Sum_probs=190.9

Q ss_pred             EEEEEEec--CCCCccccce--eEEecCCCCceEEEEcc--------------CCCeEEEEe-c-CC---eEEEEEeccc
Q 015490           89 VLLSHFDF--ASNSLSDQPV--AELRTDSDLPYRMAIHP--------------HGDGIICAL-Q-NS---CRLFEWDEVE  145 (406)
Q Consensus        89 ~~~~~~~~--~~~~~~~~~~--~~~~~h~~~v~~~~~sp--------------~~~~l~~~~-~-~~---~~i~~~~~~~  145 (406)
                      +.+..||.  ....    .+  ..+.+|...+..+++++              .+..+++++ + +.   ..|+.|+...
T Consensus        93 ~~i~lwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g  168 (415)
T 2hqs_A           93 VAYQLVDTGGAPGT----VLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG  168 (415)
T ss_dssp             EEEEEEECSSSTTC----EEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS
T ss_pred             EEEEEEeCCCCCCC----EEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC
Confidence            35566776  4432    33  56889999998888875              155666554 2 12   4666666542


Q ss_pred             ccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCC---eEEEEeCCCcceEeeeeccCCceeEEEEccCCC
Q 015490          146 NTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENG---NLRVFKWPSLEIILNESEAHASVKDLSFSPDGK  222 (406)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~  222 (406)
                       .....           ...+...+.+++|+|||++|++++.++   .|++||+.+++.. .+..+...+.+++|+|||+
T Consensus       169 -~~~~~-----------l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~  235 (415)
T 2hqs_A          169 -YNQFV-----------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGS  235 (415)
T ss_dssp             -CSCEE-----------EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSS
T ss_pred             -CCCEE-----------EeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCC
Confidence             21111           122557899999999999999998875   9999999988775 4566667899999999999


Q ss_pred             EEE-EEeCCCC--EEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCc--EEEEEeCCCceEEEEee
Q 015490          223 FLV-SLGNRGP--GRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGA--SIVTWNTTTWKRIRTKQ  297 (406)
Q Consensus       223 ~l~-s~s~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~i~~~d~~~~~~~~~~~  297 (406)
                      +|+ +++.++.  |++||+.+++.. .+.. +...+.+++|+|+++.     ++..+..++  .|++||+.+++. ..+.
T Consensus       236 ~la~~~~~~g~~~i~~~d~~~~~~~-~l~~-~~~~~~~~~~spdg~~-----l~~~s~~~g~~~i~~~d~~~~~~-~~l~  307 (415)
T 2hqs_A          236 KLAFALSKTGSLNLYVMDLASGQIR-QVTD-GRSNNTEPTWFPDSQN-----LAFTSDQAGRPQVYKVNINGGAP-QRIT  307 (415)
T ss_dssp             EEEEEECTTSSCEEEEEETTTCCEE-ECCC-CSSCEEEEEECTTSSE-----EEEEECTTSSCEEEEEETTSSCC-EECC
T ss_pred             EEEEEEecCCCceEEEEECCCCCEE-eCcC-CCCcccceEECCCCCE-----EEEEECCCCCcEEEEEECCCCCE-EEEe
Confidence            888 5666655  999999887763 4443 3456889999999985     333333333  888999988764 3455


Q ss_pred             ecCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCC---cEEEEE
Q 015490          298 VVREPVSSFNVSADGKLLAVGTAS---GDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDS---SVRVTV  371 (406)
Q Consensus       298 ~~~~~i~~~~~sp~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg---~i~iw~  371 (406)
                      .+...+.+++|+|+|++|++++.+   ..|++||+.+++.. .+. .+. .+.+++|+|||++|++++.++   .|++||
T Consensus       308 ~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~-~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d  384 (415)
T 2hqs_A          308 WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLS-STF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVS  384 (415)
T ss_dssp             CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECC-CSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred             cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Eec-CCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEE
Confidence            566778899999999999988764   58999999988774 343 343 899999999999999988777   799999


Q ss_pred             ecCC
Q 015490          372 IEDK  375 (406)
Q Consensus       372 ~~~~  375 (406)
                      +..+
T Consensus       385 ~~g~  388 (415)
T 2hqs_A          385 TDGR  388 (415)
T ss_dssp             TTSC
T ss_pred             CCCC
Confidence            8754

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.94  E-value=2.6e-24  Score=193.86  Aligned_cols=246  Identities=12%  Similarity=0.153  Sum_probs=175.9

Q ss_pred             ecCCCCceEEEEccCCCeEEEEec--CCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeC
Q 015490          110 RTDSDLPYRMAIHPHGDGIICALQ--NSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE  187 (406)
Q Consensus       110 ~~h~~~v~~~~~sp~~~~l~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  187 (406)
                      ..|...+.+++|+|++++|++++.  +.+.+|+++..++..          ..+..+.....+.+++|+|+|+++++++.
T Consensus        34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  103 (343)
T 1ri6_A           34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL----------TFAAESALPGSLTHISTDHQGQFVFVGSY  103 (343)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE----------EEEEEEECSSCCSEEEECTTSSEEEEEET
T ss_pred             EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce----------eeccccccCCCCcEEEEcCCCCEEEEEec
Confidence            457788999999999999888873  778888776433321          11222223347789999999998876654


Q ss_pred             -CCeEEEEeCC---CcceEeeeeccCCceeEEEEccCCCEEEEEe-CCCCEEEEEcCC-Ceeee----ecccCCcceEEE
Q 015490          188 -NGNLRVFKWP---SLEIILNESEAHASVKDLSFSPDGKFLVSLG-NRGPGRVWDLAS-SAVAT----PLAKENDELFAS  257 (406)
Q Consensus       188 -dg~i~vwd~~---~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s-~d~~i~iwd~~~-~~~~~----~~~~~~~~~~~~  257 (406)
                       ++.|.+||+.   +.+....+ .....+.+++|+|+++++++++ .++.|++||+.+ ++...    .+.......+..
T Consensus       104 ~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  182 (343)
T 1ri6_A          104 NAGNVSVTRLEDGLPVGVVDVV-EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRH  182 (343)
T ss_dssp             TTTEEEEEEEETTEEEEEEEEE-CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEE
T ss_pred             CCCeEEEEECCCCccccccccc-cCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcce
Confidence             8899999994   33333333 3334689999999999888887 889999999987 54432    223333445778


Q ss_pred             EEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC--ceE--EEEeeec------CCCeEEEEEcCCCCEEEEEe-CCCcEEE
Q 015490          258 CRFSPLNNEDYVLYIAAITDRGASIVTWNTTT--WKR--IRTKQVV------REPVSSFNVSADGKLLAVGT-ASGDISI  326 (406)
Q Consensus       258 ~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~--~~~--~~~~~~~------~~~i~~~~~sp~~~~l~~~~-~dg~i~i  326 (406)
                      ++|+|+++.     ++++...++.|.+||+..  ++.  .......      ...+..++|+|+|++|+++. .++.|.+
T Consensus       183 ~~~~pdg~~-----l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v  257 (343)
T 1ri6_A          183 MVFHPNEQY-----AYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITV  257 (343)
T ss_dssp             EEECTTSSE-----EEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             EEECCCCCE-----EEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEE
Confidence            999999984     445556789999999953  332  2222211      23567899999999887555 6899999


Q ss_pred             EECC----CceEEEEeecccccceEEEEEcCCCCeEEEEE-CCCcEEEEEec
Q 015490          327 IDSS----SLQVRTAVKKAHLGIVTALAFSYDSRALVSAS-MDSSVRVTVIE  373 (406)
Q Consensus       327 ~d~~----~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s-~dg~i~iw~~~  373 (406)
                      ||+.    +.+.+..+. .+. .+.+++|+|+|++|++++ .++.|.+|+++
T Consensus       258 ~d~~~~~~~~~~~~~~~-~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          258 FSVSEDGSVLSKEGFQP-TET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             EEECTTSCCEEEEEEEE-CSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             EEEcCCCCceEEeeeec-CCC-ccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            9998    334455553 333 388999999999888887 68999999765

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.94  E-value=3.1e-24  Score=192.89  Aligned_cols=269  Identities=14%  Similarity=0.080  Sum_probs=194.1

Q ss_pred             EEEEEecCCCCccccceeEEecCC-C-CceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeeccccc
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDS-D-LPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV  167 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~-~-~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (406)
                      .+..|+....    +.+..+.... . .+.+++|+|+++.++++......|+.|+..+++....+......      .+.
T Consensus        12 ~v~~~d~~~~----~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~------~~~   81 (337)
T 1pby_B           12 KLVVIDTEKM----AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE------ERV   81 (337)
T ss_dssp             EEEEEETTTT----EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT------EEE
T ss_pred             eEEEEECCCC----cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc------ccc
Confidence            5666776552    3444444222 2 58899999999988777644446666776655544333221000      011


Q ss_pred             CcEEEEEECCCCCEEEEee------------CCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEE
Q 015490          168 GQQLALTFDSEGTIFAAGS------------ENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRV  235 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~~------------~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~i  235 (406)
                      ..+.+++|+|+|++++++.            .++.|.+||+.+++....+.. ...+.+++|+|++++|+++  ++.|.+
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~  158 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHV  158 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEE
Confidence            2456789999999988886            579999999998887766554 3467889999999988887  689999


Q ss_pred             EEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCc-----------------------EEEEEeCCCceE
Q 015490          236 WDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGA-----------------------SIVTWNTTTWKR  292 (406)
Q Consensus       236 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------------------~i~~~d~~~~~~  292 (406)
                      ||+.+++....+.......  .+.|+|++..     +.+.+..++                       .|.+||+.+++.
T Consensus       159 ~d~~~~~~~~~~~~~~~~~--~~~~s~dg~~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  231 (337)
T 1pby_B          159 MDPEAGTLVEDKPIQSWEA--ETYAQPDVLA-----VWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM  231 (337)
T ss_dssp             EETTTTEEEEEECSTTTTT--TTBCCCBCCC-----CCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE
T ss_pred             EECCCCcEeeeeeccccCC--CceeCCCccE-----EeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc
Confidence            9999998877665443111  2367888875     222222222                       579999998876


Q ss_pred             E-EEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEE
Q 015490          293 I-RTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTV  371 (406)
Q Consensus       293 ~-~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~  371 (406)
                      . ..+..+...+.+++|+|+|++++++  ++.|.+||+.+++.+..+.  ....+.+++|+|+|++|++++.++.|++||
T Consensus       232 ~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d  307 (337)
T 1pby_B          232 AMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP--LPHSYYSVNVSTDGSTVWLGGALGDLAAYD  307 (337)
T ss_dssp             EEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred             eEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec--CCCceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence            4 2233445678899999999999988  7899999999998888775  345678999999999999999999999999


Q ss_pred             ecCCcCCCCch
Q 015490          372 IEDKKKSGGLN  382 (406)
Q Consensus       372 ~~~~~~~~~~~  382 (406)
                      +.+++.+..++
T Consensus       308 ~~~~~~~~~~~  318 (337)
T 1pby_B          308 AETLEKKGQVD  318 (337)
T ss_dssp             TTTCCEEEEEE
T ss_pred             CcCCcEEEEEE
Confidence            99988766554

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.94  E-value=8.3e-24  Score=189.91  Aligned_cols=262  Identities=13%  Similarity=0.133  Sum_probs=186.1

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCc
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQ  169 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (406)
                      .+..|+....    +.+..+..+...+ +++|+|+++++++++.+...|+.|+..+++..           ...+.....
T Consensus        21 ~v~~~d~~~~----~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~-----------~~~~~~~~~   84 (331)
T 3u4y_A           21 RISFFSTDTL----EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK-----------VVAIQEGQS   84 (331)
T ss_dssp             EEEEEETTTC----CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE-----------EEEEEECSS
T ss_pred             eEEEEeCccc----ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee-----------EEecccCCC
Confidence            5667777653    3445555666667 99999999988887754447777777654330           122223333


Q ss_pred             EEE-EEECCCCCEEEEeeCCC---eEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEE-eCCCC-EEEEEcCCCee
Q 015490          170 QLA-LTFDSEGTIFAAGSENG---NLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSL-GNRGP-GRVWDLASSAV  243 (406)
Q Consensus       170 v~~-~~~s~~g~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-s~d~~-i~iwd~~~~~~  243 (406)
                      ... ++|+|+|++++++..++   .|.+||+.+++.+..+.. .....+++|+|+|++++++ ..++. +.+|++.....
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~  163 (331)
T 3u4y_A           85 SMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGV  163 (331)
T ss_dssp             CCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCC
T ss_pred             CccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCc
Confidence            344 99999999998665553   899999999888766544 3457999999999866555 55588 99999875433


Q ss_pred             e-----eecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceE---EEEeeecCCCeEEEEEcCCCCEE
Q 015490          244 A-----TPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKR---IRTKQVVREPVSSFNVSADGKLL  315 (406)
Q Consensus       244 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~i~~~~~sp~~~~l  315 (406)
                      +     ..+  ........++|+|+++.     +.++...++.|.+||+.+++.   +..+..+ ..+..++|+|||+++
T Consensus       164 ~~~~~~~~~--~~~~~~~~~~~spdg~~-----l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l  235 (331)
T 3u4y_A          164 LFDTGQEFI--SGGTRPFNITFTPDGNF-----AFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTV  235 (331)
T ss_dssp             EEEEEEEEE--CSSSSEEEEEECTTSSE-----EEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEE
T ss_pred             EeecCCccc--cCCCCccceEECCCCCE-----EEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEE
Confidence            2     122  22334678999999985     445566789999999998887   7776654 567899999999988


Q ss_pred             EEEeC-CCcEEEEECCCceE--EEEeecc---cccc---eEEEEEcCCCCeEEEEE-CCCcEEEEEecCCc
Q 015490          316 AVGTA-SGDISIIDSSSLQV--RTAVKKA---HLGI---VTALAFSYDSRALVSAS-MDSSVRVTVIEDKK  376 (406)
Q Consensus       316 ~~~~~-dg~i~i~d~~~~~~--~~~~~~~---~~~~---v~~~~~sp~~~~l~s~s-~dg~i~iw~~~~~~  376 (406)
                      ++++. ++.|.+||+.+++.  +..+...   +..+   ...++|+|||++|++++ .++.|.+||+.+..
T Consensus       236 ~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          236 YVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             EEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred             EEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence            77654 77899999998877  3333211   1122   35689999999886655 45699999998754

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=2.7e-23  Score=192.45  Aligned_cols=241  Identities=14%  Similarity=0.110  Sum_probs=179.0

Q ss_pred             EEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-c-CCeEEEEEecccccceeecceeccceeeecccc
Q 015490           89 VLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-Q-NSCRLFEWDEVENTEIRRLGVKISEKVLSQLEN  166 (406)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (406)
                      -.++.|+.+.     .....+.+|...|.+++|+|+|+.|++++ + +...|+.|+..+++..            ....+
T Consensus       159 ~~i~i~d~~g-----~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~------------~l~~~  221 (415)
T 2hqs_A          159 YELRVSDYDG-----YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR------------QVASF  221 (415)
T ss_dssp             EEEEEEETTS-----CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE------------EEECC
T ss_pred             ceEEEEcCCC-----CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE------------EeecC
Confidence            3667777654     34577888999999999999999999887 3 2346666776544321            11224


Q ss_pred             cCcEEEEEECCCCCEEE-EeeCCC--eEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeC-CC--CEEEEEcCC
Q 015490          167 VGQQLALTFDSEGTIFA-AGSENG--NLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGN-RG--PGRVWDLAS  240 (406)
Q Consensus       167 ~~~v~~~~~s~~g~~l~-~~~~dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~-d~--~i~iwd~~~  240 (406)
                      ...+.+++|+|||++|+ +++.++  .|++||+.+++. ..+..+...+.+++|+|||++|++++. ++  .|++||+.+
T Consensus       222 ~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~  300 (415)
T 2hqs_A          222 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING  300 (415)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred             CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC
Confidence            46789999999999887 565555  499999988776 456667778999999999999998886 44  577789888


Q ss_pred             CeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC
Q 015490          241 SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA  320 (406)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~  320 (406)
                      ++... +.. +...+..++|+|+++.   ++.......+..|++||+.+++.. .+..+. .+.+++|+|+|++|++++.
T Consensus       301 ~~~~~-l~~-~~~~~~~~~~spdG~~---l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~  373 (415)
T 2hqs_A          301 GAPQR-ITW-EGSQNQDADVSSDGKF---MVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSS  373 (415)
T ss_dssp             SCCEE-CCC-SSSEEEEEEECTTSSE---EEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEE
T ss_pred             CCEEE-Eec-CCCcccCeEECCCCCE---EEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEc
Confidence            76433 332 3446778999999985   222222223579999999988763 455453 7899999999999999888


Q ss_pred             CC---cEEEEECCCceEEEEeecccccceEEEEEcCCCC
Q 015490          321 SG---DISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSR  356 (406)
Q Consensus       321 dg---~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~  356 (406)
                      ++   .|++||+.. .....+. .|.+.|.+++|+|.-.
T Consensus       374 ~~~~~~l~~~d~~g-~~~~~l~-~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          374 QGMGSVLNLVSTDG-RFKARLP-ATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             ETTEEEEEEEETTS-CCEEECC-CSSSEEEEEEECCCCC
T ss_pred             CCCccEEEEEECCC-CcEEEee-CCCCCCcCCccccccc
Confidence            76   799999974 4455664 7899999999999643

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.94  E-value=1e-23  Score=201.20  Aligned_cols=297  Identities=12%  Similarity=0.096  Sum_probs=209.3

Q ss_pred             ccCCCCCcEEEEEcCCCCCCCCcCccEEEEEEec--CCCCccccceeEEecCCCCceEEEEcc----CCCeEEEEe--cC
Q 015490           63 SDDIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDF--ASNSLSDQPVAELRTDSDLPYRMAIHP----HGDGIICAL--QN  134 (406)
Q Consensus        63 ~~~~~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~h~~~v~~~~~sp----~~~~l~~~~--~~  134 (406)
                      ...+++++++++++.++          .+..||.  .+    .+.+.++. +...+..++|+|    +|+++++++  ++
T Consensus       184 v~~spdg~~l~v~~~d~----------~V~v~D~~~~t----~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~  248 (543)
T 1nir_A          184 SRMSASGRYLLVIGRDA----------RIDMIDLWAKE----PTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPP  248 (543)
T ss_dssp             EEECTTSCEEEEEETTS----------EEEEEETTSSS----CEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESS
T ss_pred             EEECCCCCEEEEECCCC----------eEEEEECcCCC----CcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCC
Confidence            34566788888775431          4555666  33    24556666 455679999999    999999887  56


Q ss_pred             CeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcceEe-eeeccCCce
Q 015490          135 SCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGT-IFAAGSENGNLRVFKWPSLEIIL-NESEAHASV  212 (406)
Q Consensus       135 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~i  212 (406)
                      ++.+|  |..+.+.+..+...........+.....+..+.++|++. ++++...++.|.+||+.+.+.+. ....+...+
T Consensus       249 ~v~v~--D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~  326 (543)
T 1nir_A          249 QFAIM--DGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFL  326 (543)
T ss_dssp             EEEEE--ETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSC
T ss_pred             eEEEE--eccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCc
Confidence            66665  555555544433210000000111224788999999775 55666778999999998765433 122344568


Q ss_pred             eEEEEccCCCEEEEEe-CCCCEEEEEcCCCeeeeecccC---CcceEEEEEEEcCCCCceEEEEEEEc-CCCcEEEEEeC
Q 015490          213 KDLSFSPDGKFLVSLG-NRGPGRVWDLASSAVATPLAKE---NDELFASCRFSPLNNEDYVLYIAAIT-DRGASIVTWNT  287 (406)
Q Consensus       213 ~~~~~s~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~i~~~d~  287 (406)
                      .++.|+|+|+++++++ .+++|.+||..++++...+...   +......+ ++|++..     +.+++ ..+++|.+||+
T Consensus       327 ~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~-----~~~s~~~~d~~V~v~d~  400 (543)
T 1nir_A          327 HDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGP-----VWSTSHLGDGSISLIGT  400 (543)
T ss_dssp             CCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEE-----EEEEEBSSSSEEEEEEC
T ss_pred             cCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCcc-----EEEeccCCCceEEEEEe
Confidence            8999999999877655 5889999999999988877642   21111122 4677553     23343 46899999999


Q ss_pred             CC-------ceEEEEeeecCCCeEEEEEcCCCCEEEEEe-------CCCcEEEEECCCceEE-EEee-------cccccc
Q 015490          288 TT-------WKRIRTKQVVREPVSSFNVSADGKLLAVGT-------ASGDISIIDSSSLQVR-TAVK-------KAHLGI  345 (406)
Q Consensus       288 ~~-------~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-------~dg~i~i~d~~~~~~~-~~~~-------~~~~~~  345 (406)
                      .+       ++.+.++..+...+..++++|++++|++++       .+++|.+||+.+++.. ..+.       ..+...
T Consensus       401 ~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~  480 (543)
T 1nir_A          401 DPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKR  480 (543)
T ss_dssp             CTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCE
T ss_pred             CCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCc
Confidence            98       899999999887888999999999999987       2679999999998876 3331       135678


Q ss_pred             eEEEEEcCCCCeEEEEE-----CCCcEEEEEecCCcCCCCch
Q 015490          346 VTALAFSYDSRALVSAS-----MDSSVRVTVIEDKKKSGGLN  382 (406)
Q Consensus       346 v~~~~~sp~~~~l~s~s-----~dg~i~iw~~~~~~~~~~~~  382 (406)
                      +..+.|+|+|+.|.++.     .|+.|.|||.++++.+..++
T Consensus       481 ~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~  522 (543)
T 1nir_A          481 VVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK  522 (543)
T ss_dssp             EEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             eEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence            99999999999988663     47999999999988765443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.93  E-value=7.5e-24  Score=211.01  Aligned_cols=240  Identities=13%  Similarity=0.077  Sum_probs=175.6

Q ss_pred             CceEEEEccCCCeEEEEecCCeEEEEEeccccc--ceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEE
Q 015490          115 LPYRMAIHPHGDGIICALQNSCRLFEWDEVENT--EIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLR  192 (406)
Q Consensus       115 ~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~  192 (406)
                      .|.+++|+|||++|++++.+.  ||.|+..++.  ...           ....+...+.+++|||||++|++++ ++.|+
T Consensus       110 ~v~~~~~SpDg~~l~~~~~~~--i~~~d~~~~~~~~~~-----------~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~  175 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLGGE--LYLYDLKQEGKAAVR-----------QLTHGEGFATDAKLSPKGGFVSFIR-GRNLW  175 (741)
T ss_dssp             ESCCCEECTTSSEEEEEETTE--EEEEESSSCSTTSCC-----------BCCCSSSCEEEEEECTTSSEEEEEE-TTEEE
T ss_pred             CcceeEECCCCCEEEEEeCCc--EEEEECCCCCcceEE-----------EcccCCcccccccCCCCCCEEEEEe-CCcEE
Confidence            388999999999999988754  5555554331  111           1122346789999999999999987 46999


Q ss_pred             EEeCCCcceEeeeeccCCc----------------eeEEEEccCCCEEEEEeCCC-------------------------
Q 015490          193 VFKWPSLEIILNESEAHAS----------------VKDLSFSPDGKFLVSLGNRG-------------------------  231 (406)
Q Consensus       193 vwd~~~~~~~~~~~~~~~~----------------i~~~~~s~~~~~l~s~s~d~-------------------------  231 (406)
                      +||+.+++.......+...                +.+++|||||++|++++.|+                         
T Consensus       176 ~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~  255 (741)
T 2ecf_A          176 VIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPA  255 (741)
T ss_dssp             EEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCB
T ss_pred             EEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCC
Confidence            9999988766544333322                47899999999999987765                         


Q ss_pred             --------CEEEEEcCC-Ceeeeeccc-CCcceEEEEEEEcCCCCceEEEEEEE--cCCCcEEEEEeCCCceEEEEeeec
Q 015490          232 --------PGRVWDLAS-SAVATPLAK-ENDELFASCRFSPLNNEDYVLYIAAI--TDRGASIVTWNTTTWKRIRTKQVV  299 (406)
Q Consensus       232 --------~i~iwd~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~i~~~d~~~~~~~~~~~~~  299 (406)
                              .|++||+.+ ++....... .+...+..++| |+++.   +++...  ...+..|++||+.+++....+..+
T Consensus       256 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~---l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~  331 (741)
T 2ecf_A          256 AGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQH---LSFQRQSRDQKKLDLVEVTLASNQQRVLAHET  331 (741)
T ss_dssp             TTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTE---EEEEEEETTSSEEEEEEEETTTCCEEEEEEEE
T ss_pred             CCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCE---EEEEEecccCCeEEEEEEECCCCceEEEEEcC
Confidence                    788999988 776544332 34567889999 99985   222222  234688999999998877766655


Q ss_pred             CC----CeEEEEEcCCCCEEEEEeCCCcEEEEECC-CceEEEEeecccccceEEE-EEcCCCCeEEE-EECCC--cEEEE
Q 015490          300 RE----PVSSFNVSADGKLLAVGTASGDISIIDSS-SLQVRTAVKKAHLGIVTAL-AFSYDSRALVS-ASMDS--SVRVT  370 (406)
Q Consensus       300 ~~----~i~~~~~sp~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~v~~~-~~sp~~~~l~s-~s~dg--~i~iw  370 (406)
                      ..    .+..++|+|||+++++++.+|.++||.++ ++. ...+. .|...+..+ .|+|+|+.|+. ++.++  .++||
T Consensus       332 ~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~-~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~  409 (741)
T 2ecf_A          332 SPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALT-HGNWSVDELLAVDEKAGLAYFRAGIESARESQIY  409 (741)
T ss_dssp             CSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESC-CSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEE
T ss_pred             CCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeee-ecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEE
Confidence            43    34689999999999999889987777765 344 55554 677778887 59999987764 44455  89999


Q ss_pred             EecC
Q 015490          371 VIED  374 (406)
Q Consensus       371 ~~~~  374 (406)
                      ++..
T Consensus       410 ~~~~  413 (741)
T 2ecf_A          410 AVPL  413 (741)
T ss_dssp             EEET
T ss_pred             EEEc
Confidence            9974

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.93  E-value=5.8e-23  Score=185.73  Aligned_cols=267  Identities=11%  Similarity=0.145  Sum_probs=178.0

Q ss_pred             ccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEec--CCeEEEEEecccccceeecceeccceeeec-
Q 015490           87 NAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQ--NSCRLFEWDEVENTEIRRLGVKISEKVLSQ-  163 (406)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-  163 (406)
                      ..+.++.++.++..+.   ......+...+..++|+|+|+ |++++.  +...|+.|+...+..          +.+.. 
T Consensus        16 ~~i~v~~~d~~tg~~~---~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~----------~~~~~~   81 (347)
T 3hfq_A           16 QGIYQGTLDTTAKTLT---NDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA----------HKLNTV   81 (347)
T ss_dssp             CEEEEEEEETTTTEEE---EEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE----------EEEEEE
T ss_pred             CCEEEEEEcCCCCeEE---EeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE----------EEeeee
Confidence            4678888888664431   123344567789999999999 655542  233444444432221          11111 


Q ss_pred             ccccCcEEEEEECCCCCEEEEee-CCCeEEEEeCCC-cc--eEeeeecc---------CCceeEEEEccCCCEEEEEeCC
Q 015490          164 LENVGQQLALTFDSEGTIFAAGS-ENGNLRVFKWPS-LE--IILNESEA---------HASVKDLSFSPDGKFLVSLGNR  230 (406)
Q Consensus       164 ~~~~~~v~~~~~s~~g~~l~~~~-~dg~i~vwd~~~-~~--~~~~~~~~---------~~~i~~~~~s~~~~~l~s~s~d  230 (406)
                      ..+...+..++|+|||++|++++ .++.|.+|++.. +.  .+..+...         ...+.+++|+|+|+.+++...+
T Consensus        82 ~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~  161 (347)
T 3hfq_A           82 VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGS  161 (347)
T ss_dssp             EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTT
T ss_pred             ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCC
Confidence            12345678899999999888887 679999999963 22  22222211         1247889999999966666678


Q ss_pred             CCEEEEEcC-CCeeee--ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC--ceE--EEEeeecC---
Q 015490          231 GPGRVWDLA-SSAVAT--PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT--WKR--IRTKQVVR---  300 (406)
Q Consensus       231 ~~i~iwd~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~--~~~--~~~~~~~~---  300 (406)
                      +.|++|++. +++...  .+..........++|+|+++.     ++++...++.|.+|++..  ++.  +..+....   
T Consensus       162 ~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~-----l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~  236 (347)
T 3hfq_A          162 DKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQY-----AFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADY  236 (347)
T ss_dssp             TEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSE-----EEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTC
T ss_pred             CEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCE-----EEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCC
Confidence            899999998 454322  222233335678999999984     445567788999998763  443  22222222   


Q ss_pred             ---CCeEEEEEcCCCCEEEE-EeCCCcEEEEECCC---ceEEEEeecccccceEEEEEcCCCCeEEEEECC-CcEEEEEe
Q 015490          301 ---EPVSSFNVSADGKLLAV-GTASGDISIIDSSS---LQVRTAVKKAHLGIVTALAFSYDSRALVSASMD-SSVRVTVI  372 (406)
Q Consensus       301 ---~~i~~~~~sp~~~~l~~-~~~dg~i~i~d~~~---~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d-g~i~iw~~  372 (406)
                         ..+..++|+|||++|++ ...++.|.+|++..   .+.+..+. .+...+..++|+|||++|++++.+ +.|.+|++
T Consensus       237 ~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~  315 (347)
T 3hfq_A          237 TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS-TEGDFPRDFDLDPTEAFVVVVNQNTDNATLYAR  315 (347)
T ss_dssp             CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE-CSSSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe-cCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence               34788999999998855 45589999999973   34455553 455678899999999998888765 89999966


Q ss_pred             c
Q 015490          373 E  373 (406)
Q Consensus       373 ~  373 (406)
                      +
T Consensus       316 d  316 (347)
T 3hfq_A          316 D  316 (347)
T ss_dssp             C
T ss_pred             e
Confidence            4

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.93  E-value=7.3e-25  Score=192.96  Aligned_cols=249  Identities=11%  Similarity=0.038  Sum_probs=175.6

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEeccc-ccceeecceeccceeeecccccC
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVE-NTEIRRLGVKISEKVLSQLENVG  168 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  168 (406)
                      .++.|+....     ....+..|...|.+++|+|++++|+++.++.+.+  |+..+ ++.....          ......
T Consensus        23 ~i~~~d~~~~-----~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~--~d~~~~~~~~~~~----------~~~~~~   85 (297)
T 2ojh_A           23 SIEIFNIRTR-----KMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYR--LSLAGDPSPEKVD----------TGFATI   85 (297)
T ss_dssp             EEEEEETTTT-----EEEEEEEESSCCEEEEECTTSSEEEEEETTEEEE--EESSSCCSCEECC----------CTTCCC
T ss_pred             eEEEEeCCCC-----ceeeeccCCcceEeeEECCCCCEEEEEcCCeEEE--EeCCCCCCceEec----------cccccc
Confidence            5666776552     3445667899999999999999999988775555  44443 2221111          111225


Q ss_pred             cEEEEEECCCCCEEEEeeC--CC--eEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEE-EEeCCCCEEEEEcC--CC
Q 015490          169 QQLALTFDSEGTIFAAGSE--NG--NLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLV-SLGNRGPGRVWDLA--SS  241 (406)
Q Consensus       169 ~v~~~~~s~~g~~l~~~~~--dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-s~s~d~~i~iwd~~--~~  241 (406)
                      .+.+++|+|+|++|++++.  ++  .|..++..++.. ..+. ....+..++|+|++++|+ +++.++.+++|++.  ++
T Consensus        86 ~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~  163 (297)
T 2ojh_A           86 CNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMT-KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG  163 (297)
T ss_dssp             BCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECC-SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC
T ss_pred             cccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEee-cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCC
Confidence            6788999999999999883  33  455555555543 2333 333588999999999887 67788999999864  33


Q ss_pred             eeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC-CceEEEEeeecCCCeEEEEEcCCCCEEEEEeC
Q 015490          242 AVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT-TWKRIRTKQVVREPVSSFNVSADGKLLAVGTA  320 (406)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~  320 (406)
                      +. ..+.. +...+.+++|+|+++.     +++.+..++.+.+|++. .+.....+..+...+.+++|+|+|++|++++.
T Consensus       164 ~~-~~~~~-~~~~~~~~~~s~dg~~-----l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  236 (297)
T 2ojh_A          164 VE-TRLTH-GEGRNDGPDYSPDGRW-----IYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSY  236 (297)
T ss_dssp             CE-EECCC-SSSCEEEEEECTTSSE-----EEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEE
T ss_pred             cc-eEccc-CCCccccceECCCCCE-----EEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEc
Confidence            33 33333 3446789999999984     44444556777777765 44556667767777899999999999998876


Q ss_pred             C-----------CcEEEEECCCceEE--EEeecccccceEEEEEcCCCCeEEEEECCC
Q 015490          321 S-----------GDISIIDSSSLQVR--TAVKKAHLGIVTALAFSYDSRALVSASMDS  365 (406)
Q Consensus       321 d-----------g~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg  365 (406)
                      +           +.|++||+.+++..  ..+. +|...+.+++|+|++++|++++.|.
T Consensus       237 ~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          237 DADVFDHPRDLDVRVQLMDMDGGNVETLFDLF-GGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             ETTCCSCCSSEEEEEEEEETTSCSCEEEEEEE-ESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             CCCCCcccccCceEEEEEecCCCCceeeeccC-CCCcccccceECCCCCEEEEEEecc
Confidence            5           56999999887653  3332 6788899999999999998887654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.93  E-value=1.9e-22  Score=182.53  Aligned_cols=280  Identities=12%  Similarity=0.106  Sum_probs=201.5

Q ss_pred             CCCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEeccc
Q 015490           66 IRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVE  145 (406)
Q Consensus        66 ~~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~  145 (406)
                      +++++.++++..++..   ....-.++.++....    +.+..+.. ...+..++|+|+|++++++......|+.|+..+
T Consensus        49 s~dg~~l~~~~~~~~~---~~~~~~v~~~d~~~~----~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~  120 (353)
T 3vgz_A           49 SQQENALWLATSQSRK---LDKGGVVYRLDPVTL----EVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKT  120 (353)
T ss_dssp             ETTTTEEEEEECCCTT---TEESEEEEEECTTTC----CEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred             CCCCCEEEEEcCCCcC---CCCCccEEEEcCCCC----eEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCCC
Confidence            3466677766544321   011336777787653    23444443 345789999999998887764444677777766


Q ss_pred             ccceeecceeccceeeecccccCcEEEEEECCCCCEEEEee--CCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCE
Q 015490          146 NTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGS--ENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKF  223 (406)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~  223 (406)
                      ++....+.......  ........+.+++|+|+|+++++++  .++.|.+||..+++....+..+...+.+++|+|++++
T Consensus       121 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~  198 (353)
T 3vgz_A          121 GEVKGRLVLDDRKR--TEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR  198 (353)
T ss_dssp             CCEEEEEESCCCCC--CSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred             CeeEEEEecCCCcc--ccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence            65444433210000  0000112368899999999877765  4789999999999888776645556889999999999


Q ss_pred             EEEEeCCCCEEEEEcCCCeeeeecccC---CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC
Q 015490          224 LVSLGNRGPGRVWDLASSAVATPLAKE---NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR  300 (406)
Q Consensus       224 l~s~s~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~  300 (406)
                      +++++.++.+.+||..+++....+...   ....+..++|+|+++.     +.++...++.|.+||..+++.+..+....
T Consensus       199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~-----l~~~~~~~~~v~~~d~~~~~~~~~~~~~~  273 (353)
T 3vgz_A          199 LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQR-----AFITDSKAAEVLVVDTRNGNILAKVAAPE  273 (353)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTE-----EEEEESSSSEEEEEETTTCCEEEEEECSS
T ss_pred             EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCE-----EEEEeCCCCEEEEEECCCCcEEEEEEcCC
Confidence            999999999999999999887766541   2335678999999985     34455667999999999999888777554


Q ss_pred             CCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECC
Q 015490          301 EPVSSFNVSADGKLLAVGT-ASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMD  364 (406)
Q Consensus       301 ~~i~~~~~sp~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d  364 (406)
                      .  ..++|+|+|+++++++ .++.|.+||+.+++.+..+.  ....+.+++|+|+|++|+++..+
T Consensus       274 ~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          274 S--LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD--TPTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             C--CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE--CCSEEEEEEECTTSCEEEEEEEC
T ss_pred             C--ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe--cCCCCCeEEEcCCCCEEEEEEcc
Confidence            2  5799999999776666 58999999999999888875  34568999999999977766655

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.92  E-value=1.9e-22  Score=182.56  Aligned_cols=248  Identities=11%  Similarity=0.088  Sum_probs=189.9

Q ss_pred             CCCCceEEEEccCCCeEEEEecC------CeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEE-E
Q 015490          112 DSDLPYRMAIHPHGDGIICALQN------SCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFA-A  184 (406)
Q Consensus       112 h~~~v~~~~~sp~~~~l~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~  184 (406)
                      ....+..++|+|++++++++..+      ...|+.|+..+++....+            .....+..++|+|+|++++ +
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~------------~~~~~~~~~~~s~dg~~l~v~  106 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAI------------HNDLKPFGATINNTTQTLWFG  106 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEE------------EESSCCCSEEEETTTTEEEEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEE------------ecCCCcceEEECCCCCEEEEE
Confidence            34567899999999999887732      567888887755443332            2334567889999998555 4


Q ss_pred             eeCCCeEEEEeCCCcceEeeeeccCC---------ceeEEEEccCCCEEEEEe--CCCCEEEEEcCCCeeeeecccCCcc
Q 015490          185 GSENGNLRVFKWPSLEIILNESEAHA---------SVKDLSFSPDGKFLVSLG--NRGPGRVWDLASSAVATPLAKENDE  253 (406)
Q Consensus       185 ~~~dg~i~vwd~~~~~~~~~~~~~~~---------~i~~~~~s~~~~~l~s~s--~d~~i~iwd~~~~~~~~~~~~~~~~  253 (406)
                      ...++.|.+||..+++....+..+..         .+.+++|+|+++++++++  .++.|.+||..+++....+... ..
T Consensus       107 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~  185 (353)
T 3vgz_A          107 NTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNT-GK  185 (353)
T ss_dssp             ETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCC-CT
T ss_pred             ecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCC-CC
Confidence            45579999999999988777665432         278899999999887776  4788999999999988877632 22


Q ss_pred             eEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeee----cCCCeEEEEEcCCCCEEEEEeC-CCcEEEEE
Q 015490          254 LFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQV----VREPVSSFNVSADGKLLAVGTA-SGDISIID  328 (406)
Q Consensus       254 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~----~~~~i~~~~~sp~~~~l~~~~~-dg~i~i~d  328 (406)
                      .+..++|+|+++.     + .....++.|.+||..+++....+..    +...+..++|+|+++++++++. ++.|.+||
T Consensus       186 ~~~~~~~s~dg~~-----l-~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d  259 (353)
T 3vgz_A          186 MSTGLALDSEGKR-----L-YTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVD  259 (353)
T ss_dssp             TCCCCEEETTTTE-----E-EEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEE
T ss_pred             ccceEEECCCCCE-----E-EEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEE
Confidence            3567899999984     2 2335589999999999998877765    3456788999999998877766 58999999


Q ss_pred             CCCceEEEEeecccccceEEEEEcCCCCeEEEEE-CCCcEEEEEecCCcCCCCc
Q 015490          329 SSSLQVRTAVKKAHLGIVTALAFSYDSRALVSAS-MDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       329 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s-~dg~i~iw~~~~~~~~~~~  381 (406)
                      +.+++.+..+.. ..  ...++|+|+|+++++++ .++.|.+||+.+++.+..+
T Consensus       260 ~~~~~~~~~~~~-~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~  310 (353)
T 3vgz_A          260 TRNGNILAKVAA-PE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTF  310 (353)
T ss_dssp             TTTCCEEEEEEC-SS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCCCcEEEEEEc-CC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence            999998887762 22  25799999999766555 6899999999988765443

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.92  E-value=4.9e-23  Score=204.02  Aligned_cols=272  Identities=15%  Similarity=0.135  Sum_probs=184.5

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEeccc---ccceeecceeccceee----e
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVE---NTEIRRLGVKISEKVL----S  162 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~----~  162 (406)
                      .++.|+..+.     ....+..+...+.+++|+|||++|+++.++.+.+|+.+...   ++........ .....    .
T Consensus       102 ~i~~~d~~~~-----~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~-~~~~~~g~~~  175 (706)
T 2z3z_A          102 GLVGFDMLAR-----KVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDG-TETLVYGQAV  175 (706)
T ss_dssp             EEEEEETTTT-----EEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCC-BTTEEESSCC
T ss_pred             EEEEEECCCC-----ceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCC-CCCeEcccch
Confidence            5667776552     34456667888999999999999999877766555543200   3222111110 00000    0


Q ss_pred             cccccCcEEEEEECCCCCEEEEee---------------------------------CCCeEEEEeCCCcceEeeee--c
Q 015490          163 QLENVGQQLALTFDSEGTIFAAGS---------------------------------ENGNLRVFKWPSLEIILNES--E  207 (406)
Q Consensus       163 ~~~~~~~v~~~~~s~~g~~l~~~~---------------------------------~dg~i~vwd~~~~~~~~~~~--~  207 (406)
                      .-+....+.++.|||||++|++++                                 .+..|++||+.+++......  .
T Consensus       176 ~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~  255 (706)
T 2z3z_A          176 HQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEP  255 (706)
T ss_dssp             GGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSC
T ss_pred             hhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCC
Confidence            000112357899999999999987                                 44689999999887654432  2


Q ss_pred             cCCceeEEEEccCCCEEEEEeCCC-----CEEEEEcCCCeeeeecc-cCCcc---eEEEEEEEc--CCCCceEEEEEEEc
Q 015490          208 AHASVKDLSFSPDGKFLVSLGNRG-----PGRVWDLASSAVATPLA-KENDE---LFASCRFSP--LNNEDYVLYIAAIT  276 (406)
Q Consensus       208 ~~~~i~~~~~s~~~~~l~s~s~d~-----~i~iwd~~~~~~~~~~~-~~~~~---~~~~~~~~~--~~~~~~~l~~~~~~  276 (406)
                      +...+.+++|+|||++|++++.++     .|++||+.+++....+. .....   .+..++|+|  +++.      ++++
T Consensus       256 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~------l~~~  329 (706)
T 2z3z_A          256 KEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQF------IWQS  329 (706)
T ss_dssp             TTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEE------EEEE
T ss_pred             CceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEE------EEEE
Confidence            345789999999999999987765     89999999983333322 22221   235689999  8862      3444


Q ss_pred             CCCcEEEEEeCC-CceEEEEeeecCCCeEE-EEEcCCCCEEEEEeCC-C----cEEEEECCCceEEEEeecccccceEEE
Q 015490          277 DRGASIVTWNTT-TWKRIRTKQVVREPVSS-FNVSADGKLLAVGTAS-G----DISIIDSSSLQVRTAVKKAHLGIVTAL  349 (406)
Q Consensus       277 ~~~~~i~~~d~~-~~~~~~~~~~~~~~i~~-~~~sp~~~~l~~~~~d-g----~i~i~d~~~~~~~~~~~~~~~~~v~~~  349 (406)
                      ..++.+++|++. +++.+..+..+...+.. ++|+|+|+.|++++.+ +    .|+.||+.+++ ...+  .|...+.++
T Consensus       330 ~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l--~~~~~~~~~  406 (706)
T 2z3z_A          330 RRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDL--TPESGMHRT  406 (706)
T ss_dssp             CTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEES--CCSSSEEEE
T ss_pred             ccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceec--cCCCceEEE
Confidence            667777777765 56677777777777876 7999999988766553 3    67777887765 3344  366779999


Q ss_pred             EEcCCCCeEEEEECC----CcEEEEEecCCc
Q 015490          350 AFSYDSRALVSASMD----SSVRVTVIEDKK  376 (406)
Q Consensus       350 ~~sp~~~~l~s~s~d----g~i~iw~~~~~~  376 (406)
                      +|+|||++++..+.+    +.|++||+.+++
T Consensus       407 ~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          407 QLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             EECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             EECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            999999988876443    469999998775

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.92  E-value=4.4e-23  Score=204.93  Aligned_cols=267  Identities=12%  Similarity=0.054  Sum_probs=182.3

Q ss_pred             EEEEEecCCCCccccceeEEecCCC---CceEEEEccCCCeEEEEec-C-------CeEEEEEecccccceeecceeccc
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSD---LPYRMAIHPHGDGIICALQ-N-------SCRLFEWDEVENTEIRRLGVKISE  158 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~sp~~~~l~~~~~-~-------~~~i~~~~~~~~~~~~~~~~~~~~  158 (406)
                      .+..|+..+.    +....+.+|..   .|.+++|||||++|+++.+ .       ...+|.|+..+++. ..+      
T Consensus        38 ~i~~~d~~~g----~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l------  106 (723)
T 1xfd_A           38 TVRLWNVETN----TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSL------  106 (723)
T ss_dssp             CEEEBCGGGC----CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EEC------
T ss_pred             CEEEEECCCC----cEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-Eec------
Confidence            4666776553    24455566654   4999999999999998863 2       14666777655432 111      


Q ss_pred             eeeeccc-ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCce------------------eEEEEcc
Q 015490          159 KVLSQLE-NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASV------------------KDLSFSP  219 (406)
Q Consensus       159 ~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i------------------~~~~~s~  219 (406)
                         .... +...+..++|||||+.|++++. +.|++||+.+++.......+...+                  .+++|||
T Consensus       107 ---~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp  182 (723)
T 1xfd_A          107 ---DPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP  182 (723)
T ss_dssp             ---CCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT
T ss_pred             ---cCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECC
Confidence               1111 2234778999999999999876 799999999887665444433333                  7899999


Q ss_pred             CCCEEEEEeCCC----------------------------------CEEEEEcCCCeeeeecccC-----CcceEEEEEE
Q 015490          220 DGKFLVSLGNRG----------------------------------PGRVWDLASSAVATPLAKE-----NDELFASCRF  260 (406)
Q Consensus       220 ~~~~l~s~s~d~----------------------------------~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~  260 (406)
                      ||++|++++.|+                                  .|++||+.+++....+..+     +...+..++|
T Consensus       183 Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~  262 (723)
T 1xfd_A          183 DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKW  262 (723)
T ss_dssp             TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEE
T ss_pred             CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEE
Confidence            999999987543                                  7999999988765555433     2456889999


Q ss_pred             EcCCCCceEEEEEEE-cCCCcEEEEEeCCCceEEEEeeec-CCCe----EEEEEcCCCCEEEEE--eCCC------cEEE
Q 015490          261 SPLNNEDYVLYIAAI-TDRGASIVTWNTTTWKRIRTKQVV-REPV----SSFNVSADGKLLAVG--TASG------DISI  326 (406)
Q Consensus       261 ~~~~~~~~~l~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~-~~~i----~~~~~sp~~~~l~~~--~~dg------~i~i  326 (406)
                      +|+++.   ++.... +..+..|++||+.+++....+..+ ...+    ..++|+|||+.|+..  ..++      .|++
T Consensus       263 SpDg~~---l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~  339 (723)
T 1xfd_A          263 ATSTKV---AVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITV  339 (723)
T ss_dssp             SSSSEE---EEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEE
T ss_pred             eCCCeE---EEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEE
Confidence            999973   212211 234578999999998876665443 3333    378999999977754  4566      5777


Q ss_pred             EE-CCCceE--EEEeecccccceEE-EEEcCCCCeEEEEECC---CcEEEEEecCC
Q 015490          327 ID-SSSLQV--RTAVKKAHLGIVTA-LAFSYDSRALVSASMD---SSVRVTVIEDK  375 (406)
Q Consensus       327 ~d-~~~~~~--~~~~~~~~~~~v~~-~~~sp~~~~l~s~s~d---g~i~iw~~~~~  375 (406)
                      || ..++..  ...+. .+...+.. ++|+|||+.|+..+.+   +.+++|++...
T Consensus       340 ~d~~~~~~~~~~~~l~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~  394 (723)
T 1xfd_A          340 SSSQPNSSNDNIQSIT-SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV  394 (723)
T ss_dssp             ECSSCCSSSCCCCBSC-CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred             EeccCCCCccceeEee-cCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence            77 344441  44443 23344444 6999999999876655   78999999653

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.91  E-value=1.4e-22  Score=208.92  Aligned_cols=195  Identities=15%  Similarity=0.155  Sum_probs=153.8

Q ss_pred             cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeec-----------cCCceeEEEEc-cCCCEEEEEeCCCCEEEE
Q 015490          169 QQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESE-----------AHASVKDLSFS-PDGKFLVSLGNRGPGRVW  236 (406)
Q Consensus       169 ~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----------~~~~i~~~~~s-~~~~~l~s~s~d~~i~iw  236 (406)
                      .+...+|+|||+.++++ .++.|++|++..... ..+..           +...+.+++|+ |||++|++++ ++.+++|
T Consensus       246 ~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~  322 (1045)
T 1k32_A          246 DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKI-EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQ  322 (1045)
T ss_dssp             SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCE-EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEE
T ss_pred             CcceeeEcCCCCEEEEE-eCCEEEEecCCceEe-eeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEE
Confidence            35567999999988887 488999999854433 34433           22368999999 9999999888 7899999


Q ss_pred             EcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEE-EEeCCCceEEEEeeecCCCeEEEEEcCCCCEE
Q 015490          237 DLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIV-TWNTTTWKRIRTKQVVREPVSSFNVSADGKLL  315 (406)
Q Consensus       237 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~-~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l  315 (406)
                      ++.+++... +..+....+..++|+ +++.     ++.. +.+..++ +||+.+++.. .+..+...+..++|+|||++|
T Consensus       323 ~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~-----l~~~-s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~l  393 (1045)
T 1k32_A          323 DVSGTYVLK-VPEPLRIRYVRRGGD-TKVA-----FIHG-TREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFA  393 (1045)
T ss_dssp             CTTSSBEEE-CSCCSCEEEEEECSS-SEEE-----EEEE-ETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEE
T ss_pred             cCCCCceEE-ccCCCcceEEeeeEc-CCCe-----EEEE-ECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEE
Confidence            998776544 443433368899999 8764     2222 2377888 9999887654 344666789999999999999


Q ss_pred             EEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCC----------cEEEEEecCCc
Q 015490          316 AVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDS----------SVRVTVIEDKK  376 (406)
Q Consensus       316 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg----------~i~iw~~~~~~  376 (406)
                      ++++.++.|++||+.+++...... .|.+.+.+++|+|||++|++++.++          .|++||+.+++
T Consensus       394 a~~~~~~~v~~~d~~tg~~~~~~~-~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~  463 (1045)
T 1k32_A          394 VVANDRFEIMTVDLETGKPTVIER-SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK  463 (1045)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEE-CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred             EEECCCCeEEEEECCCCceEEecc-CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence            999999999999999998877764 7888999999999999999887654          89999998765

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.91  E-value=3.4e-21  Score=175.08  Aligned_cols=265  Identities=14%  Similarity=0.151  Sum_probs=180.2

Q ss_pred             CccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEec-----CCeEEEEEecccccceeecceecccee
Q 015490           86 RNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQ-----NSCRLFEWDEVENTEIRRLGVKISEKV  160 (406)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~  160 (406)
                      ...+.++.++.....+  ..+...  +...+..++|+|+|++|++++.     +.+.+|.++..++...          .
T Consensus        26 ~~~i~~~~~d~~~g~~--~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~----------~   91 (361)
T 3scy_A           26 SKGIYTFRFNEETGES--LPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH----------L   91 (361)
T ss_dssp             CCEEEEEEEETTTCCE--EEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE----------E
T ss_pred             CCCEEEEEEeCCCCCE--EEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE----------E
Confidence            3567888888876543  223333  7788899999999999988874     5777788876433211          1


Q ss_pred             eeccc-ccCcEEEEEECCCCCEEEEee-CCCeEEEEeCCCcceEeeee---cc-----------CCceeEEEEccCCCEE
Q 015490          161 LSQLE-NVGQQLALTFDSEGTIFAAGS-ENGNLRVFKWPSLEIILNES---EA-----------HASVKDLSFSPDGKFL  224 (406)
Q Consensus       161 ~~~~~-~~~~v~~~~~s~~g~~l~~~~-~dg~i~vwd~~~~~~~~~~~---~~-----------~~~i~~~~~s~~~~~l  224 (406)
                      +.... +......+++  ++++|++++ .++.|.+|++.....+....   .+           ...+.+++|+|+|+++
T Consensus        92 ~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l  169 (361)
T 3scy_A           92 LNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYL  169 (361)
T ss_dssp             EEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEE
T ss_pred             eeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEE
Confidence            11111 2345667777  888777765 57899999997543322111   11           1235789999999977


Q ss_pred             EEEe-CCCCEEEEEcCCCee------e------eecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCce
Q 015490          225 VSLG-NRGPGRVWDLASSAV------A------TPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK  291 (406)
Q Consensus       225 ~s~s-~d~~i~iwd~~~~~~------~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~  291 (406)
                      ++++ .++.+.+|++.....      +      .............++|+|+++.     +.++...++.|.+||+.+++
T Consensus       170 ~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~-----l~v~~~~~~~v~v~~~~~g~  244 (361)
T 3scy_A          170 LADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKF-----AYLINEIGGTVIAFRYADGM  244 (361)
T ss_dssp             EEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSE-----EEEEETTTCEEEEEEEETTE
T ss_pred             EEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCE-----EEEEcCCCCeEEEEEecCCc
Confidence            6665 478999999875431      1      1222233445678999999984     44555678999999998765


Q ss_pred             E--EEEeee---cCCCeEEEEEcCCCCEEEEEeCC--CcEEEEECC--Cce--EEEEeecccccceEEEEEcCCCCeEEE
Q 015490          292 R--IRTKQV---VREPVSSFNVSADGKLLAVGTAS--GDISIIDSS--SLQ--VRTAVKKAHLGIVTALAFSYDSRALVS  360 (406)
Q Consensus       292 ~--~~~~~~---~~~~i~~~~~sp~~~~l~~~~~d--g~i~i~d~~--~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~s  360 (406)
                      .  +..+..   +......++|+|||++|+++..+  +.|.+|++.  +++  .+..+. . ...+.+++|+|||++|++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~-~-g~~~~~~~~spdg~~l~~  322 (361)
T 3scy_A          245 LDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL-T-GIHPRNFIITPNGKYLLV  322 (361)
T ss_dssp             EEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE-C-SSCCCEEEECTTSCEEEE
T ss_pred             eEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec-C-CCCCceEEECCCCCEEEE
Confidence            4  222222   22446799999999999777665  889999985  344  344443 2 456889999999999888


Q ss_pred             EE-CCCcEEEEEec
Q 015490          361 AS-MDSSVRVTVIE  373 (406)
Q Consensus       361 ~s-~dg~i~iw~~~  373 (406)
                      ++ .++.|.+|+++
T Consensus       323 ~~~~~~~v~v~~~d  336 (361)
T 3scy_A          323 ACRDTNVIQIFERD  336 (361)
T ss_dssp             EETTTTEEEEEEEC
T ss_pred             EECCCCCEEEEEEE
Confidence            87 67899997765

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.91  E-value=5.9e-23  Score=204.58  Aligned_cols=254  Identities=14%  Similarity=0.124  Sum_probs=180.5

Q ss_pred             CCCceEEEEccCCCeEEEEec--C---CeEEEEEecccccceeecceeccc----------eee---ecccccCcEEEEE
Q 015490          113 SDLPYRMAIHPHGDGIICALQ--N---SCRLFEWDEVENTEIRRLGVKISE----------KVL---SQLENVGQQLALT  174 (406)
Q Consensus       113 ~~~v~~~~~sp~~~~l~~~~~--~---~~~i~~~~~~~~~~~~~~~~~~~~----------~~~---~~~~~~~~v~~~~  174 (406)
                      ...|.+++|+|||++|++++.  +   ...||.|+..+++....+......          ...   ..+.+...+.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            567899999999999998874  3   237777877665543332211000          000   0000012377899


Q ss_pred             ECCCCCEEEEeeCCCeEEEEeCCCcc--eEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCc
Q 015490          175 FDSEGTIFAAGSENGNLRVFKWPSLE--IILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKEND  252 (406)
Q Consensus       175 ~s~~g~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~  252 (406)
                      |||||++|++++. +.|++||+.++.  ....+..+...+.+++|||||++|++++. +.|++||+.+++.......+..
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~  193 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGST  193 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCS
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCcc
Confidence            9999999999886 899999998873  34456666678999999999999998884 5899999998877655443322


Q ss_pred             ce---------------EEEEEEEcCCCCceEEEEEEEcC------------------------------CCcEEEEEeC
Q 015490          253 EL---------------FASCRFSPLNNEDYVLYIAAITD------------------------------RGASIVTWNT  287 (406)
Q Consensus       253 ~~---------------~~~~~~~~~~~~~~~l~~~~~~~------------------------------~~~~i~~~d~  287 (406)
                      ..               +..++|+|+++.   +++.....                              ....|++||+
T Consensus       194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~---l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~  270 (741)
T 2ecf_A          194 TIGNGIAEFVADEEMDRHTGYWWAPDDSA---IAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISP  270 (741)
T ss_dssp             SEEESCCCHHHHHHSCCCCSEEECTTSSC---EEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECS
T ss_pred             ceeccccceeeeeccccccceEECCCCCE---EEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEEC
Confidence            11               357999999996   21211111                              1128899999


Q ss_pred             CC-ceEEEEee--ecCCCeEEEEEcCCCCEEEEEeC-----CCcEEEEECCCceEEEEeeccccc----ceEEEEEcCCC
Q 015490          288 TT-WKRIRTKQ--VVREPVSSFNVSADGKLLAVGTA-----SGDISIIDSSSLQVRTAVKKAHLG----IVTALAFSYDS  355 (406)
Q Consensus       288 ~~-~~~~~~~~--~~~~~i~~~~~sp~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~----~v~~~~~sp~~  355 (406)
                      .+ ++......  .+...+.+++| |||++|++++.     +..|++||+.+++....+. .+..    .+..++|+|||
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~spdg  348 (741)
T 2ecf_A          271 AEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAH-ETSPTWVPLHNSLRFLDDG  348 (741)
T ss_dssp             STTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEE-EECSSCCCCCSCCEECTTS
T ss_pred             CCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEE-cCCCCcCCcCCceEECCCC
Confidence            88 77654432  25567899999 99999997764     5679999999988777664 3332    45689999999


Q ss_pred             CeEEEEECCCcEEEEEec
Q 015490          356 RALVSASMDSSVRVTVIE  373 (406)
Q Consensus       356 ~~l~s~s~dg~i~iw~~~  373 (406)
                      +++++++.||.++||.++
T Consensus       349 ~~~~~~~~~g~~~l~~~~  366 (741)
T 2ecf_A          349 SILWSSERTGFQHLYRID  366 (741)
T ss_dssp             CEEEEECTTSSCEEEEEC
T ss_pred             eEEEEecCCCccEEEEEc
Confidence            988999999988999886

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.91  E-value=1.5e-21  Score=176.29  Aligned_cols=272  Identities=13%  Similarity=-0.001  Sum_probs=177.1

Q ss_pred             EEEEEecCCCCccccceeEEecCC-CCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccC
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDS-DLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVG  168 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (406)
                      .+..|+....    +.+..+..+. ..+..++|+|++++++++......|+.|+..+++....+......     .....
T Consensus        22 ~v~~~d~~~~----~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~-----~~~~~   92 (349)
T 1jmx_B           22 NLHVVDVASD----TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP-----GEVGR   92 (349)
T ss_dssp             EEEEEETTTT----EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCST-----TEEEE
T ss_pred             eEEEEECCCC----cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccc-----ccccc
Confidence            5677777653    3444554433 268899999999988777644446666776655443332210000     00012


Q ss_pred             cEEEEEECCCCCEEEEeeCC------------CeEEEEeCCCcceEee--eeccCCceeEEEEccCCCEEEEEeCCCCEE
Q 015490          169 QQLALTFDSEGTIFAAGSEN------------GNLRVFKWPSLEIILN--ESEAHASVKDLSFSPDGKFLVSLGNRGPGR  234 (406)
Q Consensus       169 ~v~~~~~s~~g~~l~~~~~d------------g~i~vwd~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~  234 (406)
                      .+.+++|+|||+++++++.+            +.|.+||+.+++....  ...+...+.+++|+|+|+ +++++.  .|.
T Consensus        93 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~~--~i~  169 (349)
T 1jmx_B           93 SMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAGP--DIY  169 (349)
T ss_dssp             CSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEESS--SEE
T ss_pred             cccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEccC--cEE
Confidence            36789999999999998865            8999999988543322  122334688999999999 666543  499


Q ss_pred             EEEcCCCeeeeecccCCcc-----------------------eEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCce
Q 015490          235 VWDLASSAVATPLAKENDE-----------------------LFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK  291 (406)
Q Consensus       235 iwd~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~  291 (406)
                      +||+.+++....+......                       ....+++++++...     .........+..+|..+++
T Consensus       170 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~~~~~~~~~~~~~  244 (349)
T 1jmx_B          170 KMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQD-----PATADLLYGYLSVDLKTGK  244 (349)
T ss_dssp             EECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC------------CCCEEEEEEEEEETTTCC
T ss_pred             EEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCC-----ccccccceeEEEEeccCCc
Confidence            9999998877665433200                       23345555544210     0000011122235555443


Q ss_pred             E-EEEeeecCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEE
Q 015490          292 R-IRTKQVVREPVSSFNVSA-DGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV  369 (406)
Q Consensus       292 ~-~~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~i  369 (406)
                      . ...+..+...+.+++|+| ++++++++  ++.|.+||+.+++.+..+.  ....+.+++|+|+|++|++++.++.|++
T Consensus       245 ~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~v~v  320 (349)
T 1jmx_B          245 THTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN--LDHTYYCVAFDKKGDKLYLGGTFNDLAV  320 (349)
T ss_dssp             EEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE--CSSCCCEEEECSSSSCEEEESBSSEEEE
T ss_pred             EEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc--CCCCccceEECCCCCEEEEecCCCeEEE
Confidence            2 112223456788999999 99999988  8899999999999888775  3345789999999999988888999999


Q ss_pred             EEecCCcCCCCch
Q 015490          370 TVIEDKKKSGGLN  382 (406)
Q Consensus       370 w~~~~~~~~~~~~  382 (406)
                      ||+++++.+..++
T Consensus       321 ~d~~~~~~~~~~~  333 (349)
T 1jmx_B          321 FNPDTLEKVKNIK  333 (349)
T ss_dssp             EETTTTEEEEEEE
T ss_pred             Eeccccceeeeee
Confidence            9999988766554

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.90  E-value=6.6e-22  Score=203.86  Aligned_cols=264  Identities=14%  Similarity=0.110  Sum_probs=196.7

Q ss_pred             EEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccC
Q 015490           89 VLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVG  168 (406)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (406)
                      ..++.++....     ....+..|. .+..++|+|||+.++++.++.  ||.|+.. ...+..+.............+..
T Consensus       226 ~~l~~~~~~g~-----~~~~l~~~~-~~~~~~~SpDG~~la~~~~~~--i~~~d~~-~~~l~~l~~~~~~~~~~~~~~~~  296 (1045)
T 1k32_A          226 GQIYSTDLDGK-----DLRKHTSFT-DYYPRHLNTDGRRILFSKGGS--IYIFNPD-TEKIEKIEIGDLESPEDRIISIP  296 (1045)
T ss_dssp             CEEEEEETTSC-----SCEECCCCC-SSCEEEEEESSSCEEEEETTE--EEEECTT-TCCEEECCCCCCCBCCSEEEECG
T ss_pred             eEEEEEeCCCC-----cceEecCCC-CcceeeEcCCCCEEEEEeCCE--EEEecCC-ceEeeeeccCccccccccccccc
Confidence            46777776542     334455555 467889999999999887665  5555552 22222221110001111112334


Q ss_pred             cEEEEEEC-CCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCC-ceeEEEEccCCCEEEEEeCCCCEE-EEEcCCCeeee
Q 015490          169 QQLALTFD-SEGTIFAAGSENGNLRVFKWPSLEIILNESEAHA-SVKDLSFSPDGKFLVSLGNRGPGR-VWDLASSAVAT  245 (406)
Q Consensus       169 ~v~~~~~s-~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~s~s~d~~i~-iwd~~~~~~~~  245 (406)
                      .+.+++|| |||+++++++ ++.|++|++.+++.. .+..+.. .+..++|+ ||+.|++++.++.+. +||+.+++...
T Consensus       297 ~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~  373 (1045)
T 1k32_A          297 SKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK  373 (1045)
T ss_dssp             GGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred             ccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE
Confidence            68899999 9999999887 789999999877654 3555666 89999999 999999999888888 99998776543


Q ss_pred             ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCC---
Q 015490          246 PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASG---  322 (406)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg---  322 (406)
                       +. .+...+..++|+|+++.      ++.++.++.|++||+.+++.......|...+.+++|||||++|++++.++   
T Consensus       374 -l~-~~~~~~~~~~~SpDG~~------la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~  445 (1045)
T 1k32_A          374 -FE-ENLGNVFAMGVDRNGKF------AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGE  445 (1045)
T ss_dssp             -CC-CCCCSEEEEEECTTSSE------EEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSST
T ss_pred             -ec-CCccceeeeEECCCCCE------EEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCcccc
Confidence             33 44556889999999984      33445688999999999988777777888889999999999999887644   


Q ss_pred             -------cEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490          323 -------DISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIED  374 (406)
Q Consensus       323 -------~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~  374 (406)
                             .|++||+.+++ ...+. .|...+..++|+|||++|++++.++...+|+...
T Consensus       446 ~~~~~~~~i~l~d~~~g~-~~~l~-~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~  502 (1045)
T 1k32_A          446 TDGYVMQAIHVYDMEGRK-IFAAT-TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV  502 (1045)
T ss_dssp             TCSCCEEEEEEEETTTTE-EEECS-CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred             ccCCCCCeEEEEECCCCc-EEEee-CCCcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence                   89999999887 44553 6778889999999999999999988888887643

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.90  E-value=1.6e-21  Score=174.97  Aligned_cols=236  Identities=11%  Similarity=0.085  Sum_probs=166.6

Q ss_pred             EEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeC-CCeEEEEe
Q 015490          119 MAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE-NGNLRVFK  195 (406)
Q Consensus       119 ~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~vwd  195 (406)
                      ..|.+++.+++++.  ++.+.+  |+..+++....+..           +...+ +++|+|+|+++++++. ++.|.+||
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~--~d~~~~~~~~~~~~-----------~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d   68 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISF--FSTDTLEILNQITL-----------GYDFV-DTAITSDCSNVVVTSDFCQTLVQIE   68 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEE--EETTTCCEEEEEEC-----------CCCEE-EEEECSSSCEEEEEESTTCEEEEEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEE--EeCcccceeeeEEc-----------cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEE
Confidence            35667777766665  555554  55554443322211           23445 9999999997666655 88999999


Q ss_pred             CCCcce-EeeeeccCCceeEEEEccCCCEEEEEeCCC---CEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEE
Q 015490          196 WPSLEI-ILNESEAHASVKDLSFSPDGKFLVSLGNRG---PGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY  271 (406)
Q Consensus       196 ~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  271 (406)
                      +.+++. ...+..+.....+++|+|++++++++..++   .|.+||+.+++....+....  ....++|+|+++.     
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~--~~~~~~~spdg~~-----  141 (331)
T 3u4y_A           69 TQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY--DAVGIAISPNGNG-----  141 (331)
T ss_dssp             CSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT--TEEEEEECTTSSC-----
T ss_pred             CCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC--CccceEECCCCCE-----
Confidence            999887 555555555555599999999999555443   89999999998887765433  3579999999986     


Q ss_pred             EEEEcCCCcE-EEEEeCCCceEE----EEeeecCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCceE---EEEeeccc
Q 015490          272 IAAITDRGAS-IVTWNTTTWKRI----RTKQVVREPVSSFNVSADGKLLAVGT-ASGDISIIDSSSLQV---RTAVKKAH  342 (406)
Q Consensus       272 ~~~~~~~~~~-i~~~d~~~~~~~----~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~i~i~d~~~~~~---~~~~~~~~  342 (406)
                      ++++...++. |.+|++.....+    ............++|+|+|+++++++ .++.|.+||+.+++.   +..+.  +
T Consensus       142 l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~--~  219 (331)
T 3u4y_A          142 LILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG--T  219 (331)
T ss_dssp             EEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE--C
T ss_pred             EEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc--C
Confidence            3334344556 999998753322    11222345689999999999776655 588999999998887   76665  4


Q ss_pred             ccceEEEEEcCCCCeEEEEE-CCCcEEEEEecCCcC
Q 015490          343 LGIVTALAFSYDSRALVSAS-MDSSVRVTVIEDKKK  377 (406)
Q Consensus       343 ~~~v~~~~~sp~~~~l~s~s-~dg~i~iw~~~~~~~  377 (406)
                      ...+..++|+|||++|++++ .++.|.+||+.+++.
T Consensus       220 ~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          220 NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL  255 (331)
T ss_dssp             SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred             CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence            46778999999999776554 578899999988765

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.90  E-value=9.9e-22  Score=172.81  Aligned_cols=222  Identities=11%  Similarity=0.022  Sum_probs=161.8

Q ss_pred             cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCC-cceEeeeeccC-C
Q 015490          133 QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPS-LEIILNESEAH-A  210 (406)
Q Consensus       133 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~-~  210 (406)
                      +....|+.|+..+++.            .....+...+.+++|+|+|++|++++ ++.|++||+.+ ++.......+. .
T Consensus        19 ~~~~~i~~~d~~~~~~------------~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~   85 (297)
T 2ojh_A           19 SMRSSIEIFNIRTRKM------------RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATI   85 (297)
T ss_dssp             CCCEEEEEEETTTTEE------------EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCC
T ss_pred             CcceeEEEEeCCCCce------------eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccc
Confidence            3445666677654332            22233567899999999999999986 78999999998 77665554553 4


Q ss_pred             ceeEEEEccCCCEEEEEe--CCCCEEEEE--cCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEe
Q 015490          211 SVKDLSFSPDGKFLVSLG--NRGPGRVWD--LASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWN  286 (406)
Q Consensus       211 ~i~~~~~s~~~~~l~s~s--~d~~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d  286 (406)
                      .+.+++|+|++++|++++  .++...||.  ..+++ ...+....  .+..++|+|+++.     ++.++..++.+.+|+
T Consensus        86 ~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~--~~~~~~~spdg~~-----l~~~~~~~~~~~l~~  157 (297)
T 2ojh_A           86 CNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL--PSYWHGWSPDGKS-----FTYCGIRDQVFDIYS  157 (297)
T ss_dssp             BCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS--SEEEEEECTTSSE-----EEEEEEETTEEEEEE
T ss_pred             cccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC--CccceEECCCCCE-----EEEEECCCCceEEEE
Confidence            789999999999999998  334555554  44444 33333322  3778999999985     333445577778887


Q ss_pred             C--CCceEEEEeeecCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECC-CceEEEEeecccccceEEEEEcCCCCeEEEEE
Q 015490          287 T--TTWKRIRTKQVVREPVSSFNVSADGKLLAVGT-ASGDISIIDSS-SLQVRTAVKKAHLGIVTALAFSYDSRALVSAS  362 (406)
Q Consensus       287 ~--~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~i~i~d~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s  362 (406)
                      +  .+++ ...+..+...+.+++|+|++++|++++ .++.+++|++. .+.....+. .|...+..++|+|+|++|++++
T Consensus       158 ~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~  235 (297)
T 2ojh_A          158 MDIDSGV-ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT-DSAYGDWFPHPSPSGDKVVFVS  235 (297)
T ss_dssp             EETTTCC-EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC-CCSEEEEEEEECTTSSEEEEEE
T ss_pred             EECCCCc-ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe-cCCcccCCeEECCCCCEEEEEE
Confidence            4  4443 455666677899999999999888776 48899999876 444555554 6778899999999999998887


Q ss_pred             CC-----------CcEEEEEecCCcC
Q 015490          363 MD-----------SSVRVTVIEDKKK  377 (406)
Q Consensus       363 ~d-----------g~i~iw~~~~~~~  377 (406)
                      .+           +.|++||+.+++.
T Consensus       236 ~~~~~~~~~~~~~~~l~~~d~~~~~~  261 (297)
T 2ojh_A          236 YDADVFDHPRDLDVRVQLMDMDGGNV  261 (297)
T ss_dssp             EETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred             cCCCCCcccccCceEEEEEecCCCCc
Confidence            66           5699999988754

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.90  E-value=1.9e-20  Score=168.50  Aligned_cols=261  Identities=11%  Similarity=0.143  Sum_probs=172.7

Q ss_pred             CCCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe--cCCeEEEEEec
Q 015490           66 IRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDE  143 (406)
Q Consensus        66 ~~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~  143 (406)
                      +++++.+++++.+.       +.+.++.++.....+  ..+..+..+. .+.+++|+|+++++++++  ++.+.+|+++ 
T Consensus        46 spdg~~l~~~~~~~-------~~v~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~-  114 (343)
T 1ri6_A           46 SPDKRYLYVGVRPE-------FRVLAYRIAPDDGAL--TFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLE-  114 (343)
T ss_dssp             CTTSSEEEEEETTT-------TEEEEEEECTTTCCE--EEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEE-
T ss_pred             CCCCCEEEEeecCC-------CeEEEEEecCCCCce--eeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECC-
Confidence            34667677665432       245666665433322  2344555444 889999999999888776  5557777664 


Q ss_pred             ccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEee-CCCeEEEEeCCC-cceEe----eeecc-CCceeEEE
Q 015490          144 VENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGS-ENGNLRVFKWPS-LEIIL----NESEA-HASVKDLS  216 (406)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~dg~i~vwd~~~-~~~~~----~~~~~-~~~i~~~~  216 (406)
                       .+.         .......+.....+.+++|+|+|+++++++ .++.|++||+.+ ++...    ....+ ...+.+++
T Consensus       115 -~~~---------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (343)
T 1ri6_A          115 -DGL---------PVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMV  184 (343)
T ss_dssp             -TTE---------EEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEE
T ss_pred             -CCc---------cccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEE
Confidence             111         112223334455688999999999888877 889999999987 54432    22222 23788999


Q ss_pred             EccCCCEEEEEe-CCCCEEEEEcCC--Cee--eee---cccC--CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEe
Q 015490          217 FSPDGKFLVSLG-NRGPGRVWDLAS--SAV--ATP---LAKE--NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWN  286 (406)
Q Consensus       217 ~s~~~~~l~s~s-~d~~i~iwd~~~--~~~--~~~---~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d  286 (406)
                      |+|+++++++++ .++.+.+||+..  ++.  ...   +...  ....+..++|+|+++.     ++++...++.|.+||
T Consensus       185 ~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~-----l~v~~~~~~~i~v~d  259 (343)
T 1ri6_A          185 FHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH-----LYACDRTASLITVFS  259 (343)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE-----EEEEETTTTEEEEEE
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCE-----EEEEecCCCEEEEEE
Confidence            999999776655 789999999953  332  111   2211  1234668999999985     444556789999999


Q ss_pred             CC----CceEEEEeeecCCCeEEEEEcCCCCEEEEEe-CCCcEEEE--ECCCceE--EEEeecccccceEEEEEcCCC
Q 015490          287 TT----TWKRIRTKQVVREPVSSFNVSADGKLLAVGT-ASGDISII--DSSSLQV--RTAVKKAHLGIVTALAFSYDS  355 (406)
Q Consensus       287 ~~----~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~i~i~--d~~~~~~--~~~~~~~~~~~v~~~~~sp~~  355 (406)
                      +.    +.+.+..+..+.. +.+++|+|+|++|++++ .++.|.+|  |..+++.  +..+.  ......+++|.++.
T Consensus       260 ~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~--~g~~p~~i~~~~~~  334 (343)
T 1ri6_A          260 VSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYA--VGQGPMWVVVNAHE  334 (343)
T ss_dssp             ECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEE--CSSSCCEEEEEEEC
T ss_pred             EcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccc--cCCCCeeEEEEccc
Confidence            98    3345555554444 88999999999998888 57999999  4445543  33333  22456677887754

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.90  E-value=5.4e-22  Score=196.58  Aligned_cols=243  Identities=16%  Similarity=0.146  Sum_probs=171.4

Q ss_pred             CCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEE
Q 015490          114 DLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRV  193 (406)
Q Consensus       114 ~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~v  193 (406)
                      ..|.+++|+|| +.++++.++.+.+  |+..+++.            .....+...+.+++|||||++|+++ .++.|++
T Consensus        82 ~~v~~~~~spd-~~~~~~~~~~i~~--~d~~~~~~------------~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v  145 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFTQGGLVG--FDMLARKV------------TYLFDTNEETASLDFSPVGDRVAYV-RNHNLYI  145 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEETTEEEE--EETTTTEE------------EEEECCTTCCTTCEECTTSSEEEEE-ETTEEEE
T ss_pred             cCceeEEECCC-CeEEEEECCEEEE--EECCCCce------------EEccCCcccccCCcCCCCCCEEEEE-ECCeEEE
Confidence            57999999999 7777777765555  45443321            1112234567789999999999985 6799999


Q ss_pred             EeCCC-----cceEeeeeccCCc--------------eeEEEEccCCCEEEEEe--------------------------
Q 015490          194 FKWPS-----LEIILNESEAHAS--------------VKDLSFSPDGKFLVSLG--------------------------  228 (406)
Q Consensus       194 wd~~~-----~~~~~~~~~~~~~--------------i~~~~~s~~~~~l~s~s--------------------------  228 (406)
                      ||+.+     ++.......+...              +.+++|+|||++|++++                          
T Consensus       146 ~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y  225 (706)
T 2z3z_A          146 ARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYY  225 (706)
T ss_dssp             EECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECC
T ss_pred             EecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeC
Confidence            99988     7665444333332              48999999999999987                          


Q ss_pred             -------CCCCEEEEEcCCCeeeeeccc-CCcceEEEEEEEcCCCCceEEEEEEEc--CCCcEEEEEeCCCceEEEEee-
Q 015490          229 -------NRGPGRVWDLASSAVATPLAK-ENDELFASCRFSPLNNEDYVLYIAAIT--DRGASIVTWNTTTWKRIRTKQ-  297 (406)
Q Consensus       229 -------~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~d~~~~~~~~~~~-  297 (406)
                             .+..|++||+.+++....... .+...+..++|+|+++.   +++....  .....|++||+.+++....+. 
T Consensus       226 ~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~---l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~  302 (706)
T 2z3z_A          226 PMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENI---LYVAEVNRAQNECKVNAYDAETGRFVRTLFV  302 (706)
T ss_dssp             CBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSE---EEEEEECTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred             CCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCE---EEEEEeCCCCCeeEEEEEECCCCceeeEEEE
Confidence                   346799999998886554432 34556889999999985   2221111  112489999999984333332 


Q ss_pred             ec-CC---CeEEEEEcC--CCCEEEEEeCCCcEEEEECC-CceEEEEeecccccceEE-EEEcCCCCeEEEEECC-C---
Q 015490          298 VV-RE---PVSSFNVSA--DGKLLAVGTASGDISIIDSS-SLQVRTAVKKAHLGIVTA-LAFSYDSRALVSASMD-S---  365 (406)
Q Consensus       298 ~~-~~---~i~~~~~sp--~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~v~~-~~~sp~~~~l~s~s~d-g---  365 (406)
                      .. ..   .+.+++|+|  ||+++++++.++.++||+++ ++..+..+. .|...+.. ++|+|+|+.|+.++.+ +   
T Consensus       303 ~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~-~~~~~v~~~~~~spdg~~l~~~~~~~~~~~  381 (706)
T 2z3z_A          303 ETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT-KGEWEVTNFAGFDPKGTRLYFESTEASPLE  381 (706)
T ss_dssp             EECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC-CSSSCEEEEEEECTTSSEEEEEESSSCTTC
T ss_pred             ccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC-CCCeEEEeeeEEcCCCCEEEEEecCCCCce
Confidence            22 22   246789999  99999999999999999876 566666664 67777876 7999999988766544 3   


Q ss_pred             -cEEEEEecCCc
Q 015490          366 -SVRVTVIEDKK  376 (406)
Q Consensus       366 -~i~iw~~~~~~  376 (406)
                       .|+.||+.+++
T Consensus       382 ~~l~~~d~~~~~  393 (706)
T 2z3z_A          382 RHFYCIDIKGGK  393 (706)
T ss_dssp             BEEEEEETTCCC
T ss_pred             EEEEEEEcCCCC
Confidence             56666665553

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.89  E-value=7.9e-21  Score=172.99  Aligned_cols=270  Identities=12%  Similarity=0.086  Sum_probs=177.7

Q ss_pred             cEEEEEEecCCCCccccceeEEe-cCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccc
Q 015490           88 AVLLSHFDFASNSLSDQPVAELR-TDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLEN  166 (406)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (406)
                      .+.++.++.....+.  .+.... .+...+..++|+|+|++|++++.+.+.+|+++. +++......          ...
T Consensus        15 ~i~~~~~d~~~g~l~--~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~~v~~~~~~~-~g~~~~~~~----------~~~   81 (365)
T 1jof_A           15 AIFTVQFDDEKLTCK--LIKRTEIPQDEPISWMTFDHERKNIYGAAMKKWSSFAVKS-PTEIVHEAS----------HPI   81 (365)
T ss_dssp             EEEEEEEETTTTEEE--EEEEEECCTTCCCSEEEECTTSSEEEEEEBTEEEEEEEEE-TTEEEEEEE----------EEC
T ss_pred             cEEEEEEECCCCCEE--EeeEEccCCCCCCcEEEECCCCCEEEEEccceEEEEEECC-CCCEEEeeE----------eec
Confidence            467777777654331  122221 344578999999999999888755667766652 232211110          011


Q ss_pred             cCcEEEEEECCCCCE--EEEee-------------CCCeEEEEeCC-CcceEeeee----ccCCceeEEEEccCCCEEEE
Q 015490          167 VGQQLALTFDSEGTI--FAAGS-------------ENGNLRVFKWP-SLEIILNES----EAHASVKDLSFSPDGKFLVS  226 (406)
Q Consensus       167 ~~~v~~~~~s~~g~~--l~~~~-------------~dg~i~vwd~~-~~~~~~~~~----~~~~~i~~~~~s~~~~~l~s  226 (406)
                      .+.+.+++|+|||++  ++++.             .+|.+.+|++. +++....+.    .+...+.+++|+|||+++++
T Consensus        82 ~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~  161 (365)
T 1jof_A           82 GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYS  161 (365)
T ss_dssp             CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred             CCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEE
Confidence            122445899999984  55553             68999999997 455443332    13347899999999998887


Q ss_pred             EeC-CCCEEEEEcC-CCeee--eecccC-CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC--CceEEE---Ee
Q 015490          227 LGN-RGPGRVWDLA-SSAVA--TPLAKE-NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT--TWKRIR---TK  296 (406)
Q Consensus       227 ~s~-d~~i~iwd~~-~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~--~~~~~~---~~  296 (406)
                      +.. ++.|++||+. +++..  ..+... +...+..++|+|+++.     +.+....++.|.+|+..  +++...   .+
T Consensus       162 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~-----l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~  236 (365)
T 1jof_A          162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNY-----LYALMEAGNRICEYVIDPATHMPVYTHHSF  236 (365)
T ss_dssp             EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSE-----EEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred             EcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCE-----EEEEECCCCeEEEEEEeCCCCcEEEccceE
Confidence            764 6799999998 66643  223221 2345788999999985     33444567899998764  555421   22


Q ss_pred             eec-------CC------CeEEEE-EcCCCCEEEEEeCC-C-----cEEEEECC-CceEEEE--eecccccceEEEEEcC
Q 015490          297 QVV-------RE------PVSSFN-VSADGKLLAVGTAS-G-----DISIIDSS-SLQVRTA--VKKAHLGIVTALAFSY  353 (406)
Q Consensus       297 ~~~-------~~------~i~~~~-~sp~~~~l~~~~~d-g-----~i~i~d~~-~~~~~~~--~~~~~~~~v~~~~~sp  353 (406)
                      ...       ..      .+..++ |+|||++|++++.+ +     .|.+|++. +++....  ....+...+..++|+|
T Consensus       237 ~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp  316 (365)
T 1jof_A          237 PLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSP  316 (365)
T ss_dssp             ESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEE
T ss_pred             EcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecC
Confidence            211       11      478999 99999998877653 2     89999996 5654432  1113445567899999


Q ss_pred             ---CCCeEEEEECC-CcEEEEEecCC
Q 015490          354 ---DSRALVSASMD-SSVRVTVIEDK  375 (406)
Q Consensus       354 ---~~~~l~s~s~d-g~i~iw~~~~~  375 (406)
                         ||++|++++.+ +.|.+|+++..
T Consensus       317 ~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          317 CPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCcCCCEEEEEEcCCCeEEEEEEchh
Confidence               89999988864 89999999765

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.89  E-value=9.5e-23  Score=202.51  Aligned_cols=238  Identities=13%  Similarity=0.077  Sum_probs=167.2

Q ss_pred             CceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccC----cEEEEEECCCCCEEEEeeCC--
Q 015490          115 LPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVG----QQLALTFDSEGTIFAAGSEN--  188 (406)
Q Consensus       115 ~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~s~~g~~l~~~~~d--  188 (406)
                      .+.+++|+|||++++++.++.+++  |+..+++....            +.++.    .+.+++|||||++|++++.+  
T Consensus        18 ~~~~~~~spdg~~~~~~~dg~i~~--~d~~~g~~~~~------------~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~   83 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYREQKGTVRL--WNVETNTSTVL------------IEGKKIESLRAIRYEISPDREYALFSYNVEP   83 (723)
T ss_dssp             CCCCCCBSSSSCBCCCCSSSCEEE--BCGGGCCCEEE------------ECTTTTTTTTCSEEEECTTSSEEEEEESCCC
T ss_pred             cccccEEcCCCcEEEEeCCCCEEE--EECCCCcEEEE------------eccccccccccceEEECCCCCEEEEEecCcc
Confidence            467889999999776644665554  55554433222            22222    48899999999999998764  


Q ss_pred             -------CeEEEEeCCCcceEeeeec---cCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcc-----
Q 015490          189 -------GNLRVFKWPSLEIILNESE---AHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDE-----  253 (406)
Q Consensus       189 -------g~i~vwd~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~-----  253 (406)
                             +.+++||+.+++.. .+..   +...+..++|||||++|++++. +.|++||+.+++.......+...     
T Consensus        84 ~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g  161 (723)
T 1xfd_A           84 IYQHSYTGYYVLSKIPHGDPQ-SLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNG  161 (723)
T ss_dssp             CSSSCCCSEEEEEESSSCCCE-ECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEE
T ss_pred             ceeecceeeEEEEECCCCceE-eccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECc
Confidence                   78999999988762 2322   2235889999999999999886 79999999988766544432221     


Q ss_pred             ------------eEEEEEEEcCCCCceEEEEEEEcC-------------------------------CCcEEEEEeCCCc
Q 015490          254 ------------LFASCRFSPLNNEDYVLYIAAITD-------------------------------RGASIVTWNTTTW  290 (406)
Q Consensus       254 ------------~~~~~~~~~~~~~~~~l~~~~~~~-------------------------------~~~~i~~~d~~~~  290 (406)
                                  .+..++|+|+++.   ++......                               .+..|++||+.++
T Consensus       162 ~~~~v~~ee~~~~~~~~~~SpDg~~---la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~  238 (723)
T 1xfd_A          162 LSDWLYEEEILKTHIAHWWSPDGTR---LAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP  238 (723)
T ss_dssp             ECCHHHHHTTSSSSEEEEECTTSSE---EEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS
T ss_pred             ccceeEEEEeccCcceEEECCCCCE---EEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCC
Confidence                        1268999999985   22221111                               1238999999988


Q ss_pred             eEEEEeeec------CCCeEEEEEcCCCCEEEEEeC----CCcEEEEECCCceEEEEeecccccceE----EEEEcCCCC
Q 015490          291 KRIRTKQVV------REPVSSFNVSADGKLLAVGTA----SGDISIIDSSSLQVRTAVKKAHLGIVT----ALAFSYDSR  356 (406)
Q Consensus       291 ~~~~~~~~~------~~~i~~~~~sp~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~v~----~~~~sp~~~  356 (406)
                      +....+..+      ...+.+++|+|||++|++...    +..|++||+.+++....+...+...+.    .++|+|||+
T Consensus       239 ~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~  318 (723)
T 1xfd_A          239 THDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGR  318 (723)
T ss_dssp             CCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSC
T ss_pred             ceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCC
Confidence            765556543      456889999999999877654    357999999998877665433444443    789999999


Q ss_pred             eEEE--EECCC------cEEEEE
Q 015490          357 ALVS--ASMDS------SVRVTV  371 (406)
Q Consensus       357 ~l~s--~s~dg------~i~iw~  371 (406)
                      .|+.  ...++      .|++||
T Consensus       319 ~l~~~~~~~~~~~~~~~~l~~~d  341 (723)
T 1xfd_A          319 KFFFIRAIPQGGRGKFYHITVSS  341 (723)
T ss_dssp             SEEEEEEECCSSSSCEEEEEEEC
T ss_pred             eEEEEEecccCCCcceeEEEEEe
Confidence            8775  44666      466666

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.88  E-value=1.6e-21  Score=188.87  Aligned_cols=234  Identities=12%  Similarity=0.045  Sum_probs=167.3

Q ss_pred             CCCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCCEEEEeeC--
Q 015490          113 SDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIFAAGSE--  187 (406)
Q Consensus       113 ~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~--  187 (406)
                      ..+|++++|+|||+.|++++  +++++||.++.  +            ...+...++ ..+..++|||| +++++++.  
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~--g------------~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~   85 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDG--G------------ETVKLNREPINSVLDPHYGVG-RVILVRDVSK   85 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEET--T------------EEEECCSSCCSEECEECTTCS-EEEEEEECST
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcC--C------------CcEeeecccccccccccCCCC-eEEEEeccCC
Confidence            45799999999999999875  78889998642  1            112222344 57889999999 77777664  


Q ss_pred             -CCeEEEEeCCC---cceEeeeeccCCceeEEEEccCCCE-EEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEc
Q 015490          188 -NGNLRVFKWPS---LEIILNESEAHASVKDLSFSPDGKF-LVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSP  262 (406)
Q Consensus       188 -dg~i~vwd~~~---~~~~~~~~~~~~~i~~~~~s~~~~~-l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  262 (406)
                       +....+|.++.   +... .+... ..+...+|+||++. +++.+.++.+.+||+.+++.......+.    .+++|+|
T Consensus        86 g~~~~~l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~----~~~~~sp  159 (582)
T 3o4h_A           86 GAEQHALFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG----FGFVSDI  159 (582)
T ss_dssp             TSCCEEEEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS----CEEEEEE
T ss_pred             CCcceEEEEEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC----ceEEECC
Confidence             45556655432   2222 33222 23456788988863 3344445566699999887655443222    5789999


Q ss_pred             CCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCC--cEEEEECCCceEEEEeec
Q 015490          263 LNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASG--DISIIDSSSLQVRTAVKK  340 (406)
Q Consensus       263 ~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~  340 (406)
                      +|+.  +.+.....+....|++||+.+++.. .+..+...+..++|||||++|+++..++  .|++||+.+++.. .+. 
T Consensus       160 DG~~--la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~-  234 (582)
T 3o4h_A          160 RGDL--IAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLE-  234 (582)
T ss_dssp             ETTE--EEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECC-
T ss_pred             CCCE--EEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ecc-
Confidence            9995  1111111122278999999887754 5667778889999999999999888888  8999999988877 543 


Q ss_pred             ccccceEEEE--------EcCCCCeEEEEECCCcEEEEEe
Q 015490          341 AHLGIVTALA--------FSYDSRALVSASMDSSVRVTVI  372 (406)
Q Consensus       341 ~~~~~v~~~~--------~sp~~~~l~s~s~dg~i~iw~~  372 (406)
                      .|...+..++        |+|||.++++++.|+++++|++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          235 LPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             CSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             CCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            6777777777        9999988899999999999998

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.88  E-value=6.2e-22  Score=183.95  Aligned_cols=201  Identities=18%  Similarity=0.179  Sum_probs=152.5

Q ss_pred             CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc----------eEe-----eeeccCCceeEEEEccCCCEEE----EEe
Q 015490          168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLE----------IIL-----NESEAHASVKDLSFSPDGKFLV----SLG  228 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~----------~~~-----~~~~~~~~i~~~~~s~~~~~l~----s~s  228 (406)
                      ..++.+++++++.++++++.++ +++|+.....          ...     ....+...|.+++|+|++++|+    +++
T Consensus        37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs  115 (434)
T 2oit_A           37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE  115 (434)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred             CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence            3577899999999999999887 8888753110          010     1112344799999999999999    778


Q ss_pred             CCCCEEEEEcCCC--------ee---eeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEee
Q 015490          229 NRGPGRVWDLASS--------AV---ATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQ  297 (406)
Q Consensus       229 ~d~~i~iwd~~~~--------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~  297 (406)
                      .|+.|++||++++        +.   ...+. .|...+.+++|+|+...     ++++++.|+.|++||++++..+....
T Consensus       116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~~-----~las~s~Dg~v~iwD~~~~~~~~~~~  189 (434)
T 2oit_A          116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLK-DAGGMVIDMKWNPTVPS-----MVAVCLADGSIAVLQVTETVKVCATL  189 (434)
T ss_dssp             TEEEEEEEEHHHHHCTTCSSCCCSEEEECCC-SGGGSEEEEEECSSCTT-----EEEEEETTSCEEEEEESSSEEEEEEE
T ss_pred             CCceEEEEEccccccCCcCCcceeeeeeccC-CCCCceEEEEECCCCCC-----EEEEEECCCeEEEEEcCCCcceeecc
Confidence            8999999998765        11   22222 34667999999998554     56677889999999999987776677


Q ss_pred             ecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeec------ccccceEEEEEcCCCCeEEEE-ECCCc----
Q 015490          298 VVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKK------AHLGIVTALAFSYDSRALVSA-SMDSS----  366 (406)
Q Consensus       298 ~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~~v~~~~~sp~~~~l~s~-s~dg~----  366 (406)
                      .|...+.+++|+|+|++|++|+.||.|++||++ ++....+..      .|...|.+++|++++.++++. +.||.    
T Consensus       190 ~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~  268 (434)
T 2oit_A          190 PSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETS  268 (434)
T ss_dssp             CGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSC
T ss_pred             CCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCC
Confidence            788899999999999999999999999999998 555544431      123479999999998877543 34433    


Q ss_pred             --EEEEEecCCc
Q 015490          367 --VRVTVIEDKK  376 (406)
Q Consensus       367 --i~iw~~~~~~  376 (406)
                        +++|++.+.+
T Consensus       269 ~~v~i~~l~~~~  280 (434)
T 2oit_A          269 PDVVMALLPKKE  280 (434)
T ss_dssp             CEEEEEECCCTT
T ss_pred             CceEEEEeccCC
Confidence              8999998653

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.87  E-value=1.8e-20  Score=174.13  Aligned_cols=211  Identities=10%  Similarity=0.049  Sum_probs=150.8

Q ss_pred             CCCceEEEEccCCCeEEEEecCCeEEEEEecccccce---eecceeccceeeecccccCcEEEEEECCCCCEEE----Ee
Q 015490          113 SDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEI---RRLGVKISEKVLSQLENVGQQLALTFDSEGTIFA----AG  185 (406)
Q Consensus       113 ~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~----~~  185 (406)
                      ...+..+++++++.++++++...+++|..........   ...... .......+.+...|.+++|+|+|++|+    +|
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIV-DKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEE-ECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCccccc-ccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            3467899999999999998855577765432100000   000000 011112234456799999999999999    78


Q ss_pred             eCCCeEEEEeCCCc--------c---eEeeeeccCCceeEEEEccC-CCEEEEEeCCCCEEEEEcCCCeeeeecccCCcc
Q 015490          186 SENGNLRVFKWPSL--------E---IILNESEAHASVKDLSFSPD-GKFLVSLGNRGPGRVWDLASSAVATPLAKENDE  253 (406)
Q Consensus       186 ~~dg~i~vwd~~~~--------~---~~~~~~~~~~~i~~~~~s~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~  253 (406)
                      +.|+.|++||++++        +   ....+.+|...|.+++|+|+ +.+|++++.||+|++||++++........ +..
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~-~~~  193 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLP-STV  193 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEEC-GGG
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccC-CCC
Confidence            89999999998654        1   13344556779999999998 78999999999999999999866554433 456


Q ss_pred             eEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC-------CCeEEEEEcCCCCEEEEEe-CCC---
Q 015490          254 LFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR-------EPVSSFNVSADGKLLAVGT-ASG---  322 (406)
Q Consensus       254 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-------~~i~~~~~sp~~~~l~~~~-~dg---  322 (406)
                      .+.+++|+|+++.      +++++.|+.|++||.+ ++....+..+.       ..+.+++|++++.++++.+ .+|   
T Consensus       194 ~v~~v~wspdg~~------lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~  266 (434)
T 2oit_A          194 AVTSVCWSPKGKQ------LAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLE  266 (434)
T ss_dssp             CEEEEEECTTSSC------EEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSS
T ss_pred             ceeEEEEcCCCCE------EEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccC
Confidence            7899999999885      4566789999999998 55555554432       2789999999988776543 343   


Q ss_pred             ---cEEEEECCCc
Q 015490          323 ---DISIIDSSSL  332 (406)
Q Consensus       323 ---~i~i~d~~~~  332 (406)
                         .+++|++.+.
T Consensus       267 ~~~~v~i~~l~~~  279 (434)
T 2oit_A          267 TSPDVVMALLPKK  279 (434)
T ss_dssp             SCCEEEEEECCCT
T ss_pred             CCCceEEEEeccC
Confidence               3899999754

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.86  E-value=4e-20  Score=179.01  Aligned_cols=257  Identities=15%  Similarity=0.106  Sum_probs=177.6

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCC-CCceEEEEccCCCeEEEEe----cCCeEEEEEe
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDS-DLPYRMAIHPHGDGIICAL----QNSCRLFEWD  142 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~sp~~~~l~~~~----~~~~~i~~~~  142 (406)
                      +++.+++++..+       +.+.++.++.       .....+..|. ..+.+++|+|| +.++++.    +...+||.++
T Consensus        32 DG~~la~~s~~~-------g~~~lw~~~~-------g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~   96 (582)
T 3o4h_A           32 DGDKLLVVGFSE-------GSVNAYLYDG-------GETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVN   96 (582)
T ss_dssp             TTTEEEEEEEET-------TEEEEEEEET-------TEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEE
T ss_pred             CCCeEEEEEccC-------CceeEEEEcC-------CCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEe
Confidence            677777654311       1345666532       2344555665 68999999999 6555543    2456888888


Q ss_pred             c--ccccceeecceeccceeeecccccCcEEEEEECCCCC--EEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEc
Q 015490          143 E--VENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGT--IFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFS  218 (406)
Q Consensus       143 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s  218 (406)
                      .  .....  .            +.....+...+|+|||+  .+++++. +.+.+||+.+++..... .+..  .+++|+
T Consensus        97 ~~~~g~~~--~------------l~~~~~~~~~~~s~dg~~~~~~s~~~-~~~~l~d~~~g~~~~l~-~~~~--~~~~~s  158 (582)
T 3o4h_A           97 TSRPGEEQ--R------------LEAVKPMRILSGVDTGEAVVFTGATE-DRVALYALDGGGLRELA-RLPG--FGFVSD  158 (582)
T ss_dssp             TTSTTCCE--E------------CTTSCSBEEEEEEECSSCEEEEEECS-SCEEEEEEETTEEEEEE-EESS--CEEEEE
T ss_pred             ccCCCccc--c------------ccCCCCceeeeeCCCCCeEEEEecCC-CCceEEEccCCcEEEee-cCCC--ceEEEC
Confidence            6  32111  1            11222334568888875  3444444 45559999888765433 3333  889999


Q ss_pred             cCCCEEEEEeCC----CCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCc--EEEEEeCCCceE
Q 015490          219 PDGKFLVSLGNR----GPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGA--SIVTWNTTTWKR  292 (406)
Q Consensus       219 ~~~~~l~s~s~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~i~~~d~~~~~~  292 (406)
                      |||++|++++.+    +.|++||+.+++.. .+.. +...+..++|+|+++.     ++ +++.++  .|++||+.+++.
T Consensus       159 pDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~-~~~~~~~~~~SpDG~~-----l~-~~~~~~~~~i~~~d~~~~~~  230 (582)
T 3o4h_A          159 IRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDS-GEGSFSSASISPGMKV-----TA-GLETAREARLVTVDPRDGSV  230 (582)
T ss_dssp             EETTEEEEEEEEETTEEEEEEEETTTCCCE-EECC-SSCEEEEEEECTTSCE-----EE-EEECSSCEEEEEECTTTCCE
T ss_pred             CCCCEEEEEEEcCCCCeEEEEEcCCCCCce-Eeec-CCCccccceECCCCCE-----EE-EccCCCeeEEEEEcCCCCcE
Confidence            999999988876    77999999888765 3433 3445789999999985     22 445566  999999999887


Q ss_pred             EEEeeecCCCeEEEE--------EcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECC
Q 015490          293 IRTKQVVREPVSSFN--------VSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMD  364 (406)
Q Consensus       293 ~~~~~~~~~~i~~~~--------~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d  364 (406)
                      . .+..+...+..++        |+|||.++++++.++.+++|++  ++...    .+.+.+.+++|+ +++++++++.+
T Consensus       231 ~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~----~~~~~v~~~~~s-dg~~l~~~s~~  302 (582)
T 3o4h_A          231 E-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE----APQGNHGRVVLW-RGKLVTSHTSL  302 (582)
T ss_dssp             E-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC----CCSSEEEEEEEE-TTEEEEEEEET
T ss_pred             E-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec----cCCCceEEEEec-CCEEEEEEcCC
Confidence            7 6666665566666        9999999999999999999999  65544    244678899999 99999888877


Q ss_pred             Cc---EEEEEec
Q 015490          365 SS---VRVTVIE  373 (406)
Q Consensus       365 g~---i~iw~~~  373 (406)
                      .+   +.+|+..
T Consensus       303 ~~p~~l~~~d~~  314 (582)
T 3o4h_A          303 STPPRIVSLPSG  314 (582)
T ss_dssp             TEEEEEEEETTC
T ss_pred             CCCCeEEEEcCC
Confidence            54   5555544

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.86  E-value=1.3e-21  Score=194.30  Aligned_cols=238  Identities=12%  Similarity=0.055  Sum_probs=161.5

Q ss_pred             eEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccC----cEEEEEECCCCCEEEEeeC-----
Q 015490          117 YRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVG----QQLALTFDSEGTIFAAGSE-----  187 (406)
Q Consensus       117 ~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~s~~g~~l~~~~~-----  187 (406)
                      .+++|+|+|++++.+.++++++  |+..+++....            +.++.    .+.+++|||||++|++++.     
T Consensus        19 ~~~~~s~dg~~~~~~~d~~i~~--~~~~~g~~~~~------------~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~   84 (719)
T 1z68_A           19 FFPNWISGQEYLHQSADNNIVL--YNIETGQSYTI------------LSNRTMKSVNASNYGLSPDRQFVYLESDYSKLW   84 (719)
T ss_dssp             CCCEESSSSEEEEECTTSCEEE--EESSSCCEEEE------------ECHHHHHTTTCSEEEECTTSSEEEEEEEEEECS
T ss_pred             CccEECCCCeEEEEcCCCCEEE--EEcCCCcEEEE------------EccccccccceeeEEECCCCCeEEEEecCceeE
Confidence            3779999997665555666555  45443332221            22221    3789999999999998876     


Q ss_pred             ----CCeEEEEeCCCcceE--eeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceE------
Q 015490          188 ----NGNLRVFKWPSLEII--LNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELF------  255 (406)
Q Consensus       188 ----dg~i~vwd~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~------  255 (406)
                          ++.|++||+.+++.+  ..+   ...+..++|||||+.|+++. ++.|++||+.+++........+...+      
T Consensus        85 ~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~  160 (719)
T 1z68_A           85 RYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPD  160 (719)
T ss_dssp             SSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCC
T ss_pred             EeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEccccc
Confidence                789999999988763  122   24688999999999999886 67999999988876543322222111      


Q ss_pred             -----------EEEEEEcCCCCceEEEEEEEcC--------------------------------CCcEEEEEeCCCceE
Q 015490          256 -----------ASCRFSPLNNEDYVLYIAAITD--------------------------------RGASIVTWNTTTWKR  292 (406)
Q Consensus       256 -----------~~~~~~~~~~~~~~l~~~~~~~--------------------------------~~~~i~~~d~~~~~~  292 (406)
                                 .+++|+|+++.   + +.++.+                                ....|++||+.+++.
T Consensus       161 ~v~~ee~~~~~~~~~wSPDG~~---l-a~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~  236 (719)
T 1z68_A          161 WVYEEEMLATKYALWWSPNGKF---L-AYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAY  236 (719)
T ss_dssp             HHHHHHTTCSSCCEEECTTSSE---E-EEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHH
T ss_pred             ceeeeecccCcccEEECCCCCE---E-EEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCc
Confidence                       47999999985   2 122211                                122889999998764


Q ss_pred             E--EE------eeecCCCeEEEEEcCCCCEEEEEeCC----CcEEEEE----CCCceEEEEee---cccccceE-----E
Q 015490          293 I--RT------KQVVREPVSSFNVSADGKLLAVGTAS----GDISIID----SSSLQVRTAVK---KAHLGIVT-----A  348 (406)
Q Consensus       293 ~--~~------~~~~~~~i~~~~~sp~~~~l~~~~~d----g~i~i~d----~~~~~~~~~~~---~~~~~~v~-----~  348 (406)
                      .  ..      +..+...+.+++|+||++++++....    ..|.+||    +.+++....+.   ..|...+.     .
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  316 (719)
T 1z68_A          237 VGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVST  316 (719)
T ss_dssp             HCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCC
T ss_pred             cceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCc
Confidence            2  11      22356678999999998877775433    2488999    88777655542   35777776     8


Q ss_pred             EEEcCCCCeEEE--EECCCc--EEEEEecCCc
Q 015490          349 LAFSYDSRALVS--ASMDSS--VRVTVIEDKK  376 (406)
Q Consensus       349 ~~~sp~~~~l~s--~s~dg~--i~iw~~~~~~  376 (406)
                      +.|+|||+.|+.  ...+|.  |.+|++.+++
T Consensus       317 ~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~  348 (719)
T 1z68_A          317 PVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN  348 (719)
T ss_dssp             CEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred             cEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence            899999996654  445564  5666665543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.85  E-value=5.6e-19  Score=161.95  Aligned_cols=284  Identities=10%  Similarity=0.026  Sum_probs=178.9

Q ss_pred             ccCCCCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEe
Q 015490           63 SDDIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWD  142 (406)
Q Consensus        63 ~~~~~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~  142 (406)
                      +..+|+++.++++...+       +...++.++.....    ......+|...+..+.|+|||+.|+.+..+. .||.|+
T Consensus        41 ~~~SpDg~~l~~~~~~~-------g~~~l~~~d~~~g~----~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~-~l~~~d  108 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFD-------GPWNYYLLDLNTQV----ATQLTEGRGDNTFGGFLSPDDDALFYVKDGR-NLMRVD  108 (388)
T ss_dssp             CCBCTTSCEEEEEECTT-------SSCEEEEEETTTCE----EEECCCSSCBCSSSCEECTTSSEEEEEETTT-EEEEEE
T ss_pred             ccCCCCCCEEEEEEcCC-------CCceEEEEeCCCCc----eEEeeeCCCCCccceEEcCCCCEEEEEeCCC-eEEEEE
Confidence            34566777777765411       12367788876532    3333445666666789999999999887432 566676


Q ss_pred             cccccceeecceeccceeeecccccCcEEE--EEECCCCCEEEEe----------------------eCCCeEEEEeCCC
Q 015490          143 EVENTEIRRLGVKISEKVLSQLENVGQQLA--LTFDSEGTIFAAG----------------------SENGNLRVFKWPS  198 (406)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~s~~g~~l~~~----------------------~~dg~i~vwd~~~  198 (406)
                      ..+++.......           +...+..  ..+++++++++..                      ..+..|.+||+.+
T Consensus       109 ~~~g~~~~~~~~-----------~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~  177 (388)
T 3pe7_A          109 LATLEENVVYQV-----------PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT  177 (388)
T ss_dssp             TTTCCEEEEEEC-----------CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT
T ss_pred             CCCCcceeeeec-----------hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCC
Confidence            665443222111           1122322  3458999988742                      2457899999998


Q ss_pred             cceEeeeeccCCceeEEEEcc-CCCEEEEEeCC------CCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEE
Q 015490          199 LEIILNESEAHASVKDLSFSP-DGKFLVSLGNR------GPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY  271 (406)
Q Consensus       199 ~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~s~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  271 (406)
                      ++.. .+..+...+..++|+| ||+.|+.++.+      ..|.++|...+.............+..++|+|+++.  +++
T Consensus       178 g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~--l~~  254 (388)
T 3pe7_A          178 GEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSA--LVY  254 (388)
T ss_dssp             CCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSC--EEE
T ss_pred             CceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCE--EEE
Confidence            8654 4445556789999999 99999887753      378888886654433332222245778899999996  222


Q ss_pred             EEEEcCC--CcEEEEEeCCCceEEEEeeecC--C---CeEEEEEcCCCCEEEEE---------eCCCcEEEEECCCceEE
Q 015490          272 IAAITDR--GASIVTWNTTTWKRIRTKQVVR--E---PVSSFNVSADGKLLAVG---------TASGDISIIDSSSLQVR  335 (406)
Q Consensus       272 ~~~~~~~--~~~i~~~d~~~~~~~~~~~~~~--~---~i~~~~~sp~~~~l~~~---------~~dg~i~i~d~~~~~~~  335 (406)
                      . .....  +..|++||+.+++.........  .   ....+.|+|||+.|+..         ..+..|++||+.+++..
T Consensus       255 ~-~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  333 (388)
T 3pe7_A          255 V-SYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH  333 (388)
T ss_dssp             E-EEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE
T ss_pred             E-ecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE
Confidence            2 22222  2359999999887433222111  0   01123799999988864         34668999999987764


Q ss_pred             EEeeccccc-----------ceEEEEEcCCCCeEEEEE-CCCcEEEEEecCC
Q 015490          336 TAVKKAHLG-----------IVTALAFSYDSRALVSAS-MDSSVRVTVIEDK  375 (406)
Q Consensus       336 ~~~~~~~~~-----------~v~~~~~sp~~~~l~s~s-~dg~i~iw~~~~~  375 (406)
                      ...  .|..           .+.+++|+|||+.|+..+ .+|...||.++-.
T Consensus       334 ~l~--~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~  383 (388)
T 3pe7_A          334 RVA--RHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLP  383 (388)
T ss_dssp             EEE--ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred             Eec--cccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECC
Confidence            433  3444           578899999999887665 5777777776544

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.85  E-value=3e-18  Score=154.70  Aligned_cols=225  Identities=10%  Similarity=0.061  Sum_probs=149.4

Q ss_pred             ceeEEecCCCCceEEEEccCCCeEEEEe--cCCeEEEEEecccc-cceeecceeccceeeecccccCcEEEEEECCCCCE
Q 015490          105 PVAELRTDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVEN-TEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTI  181 (406)
Q Consensus       105 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  181 (406)
                      .+..+..+...+..++|+|+|++|+++.  ++.+.+|+++.... .....+..  .............+.+++|+|||++
T Consensus        77 ~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~--~~~~p~~~~~~~~~~~~~~spdg~l  154 (347)
T 3hfq_A           77 KLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQH--SGHGPRPEQDGSHIHYTDLTPDNRL  154 (347)
T ss_dssp             EEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEEC--CCCCSSTTCSSCCEEEEEECTTSCE
T ss_pred             EeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeec--CCCCCCccccCCCceEEEECCCCcE
Confidence            4555566788899999999999888876  56677777753211 11111100  0000000011235889999999997


Q ss_pred             EEEeeCCCeEEEEeCC-CcceEe--eeeccC-CceeEEEEccCCCEEEEE-eCCCCEEEEEcCC--Ceee--eecccCC-
Q 015490          182 FAAGSENGNLRVFKWP-SLEIIL--NESEAH-ASVKDLSFSPDGKFLVSL-GNRGPGRVWDLAS--SAVA--TPLAKEN-  251 (406)
Q Consensus       182 l~~~~~dg~i~vwd~~-~~~~~~--~~~~~~-~~i~~~~~s~~~~~l~s~-s~d~~i~iwd~~~--~~~~--~~~~~~~-  251 (406)
                      +++...++.|++|++. +++...  .+.... ..+..++|+|||++++++ ..++.+.+|++..  ++..  ..+.... 
T Consensus       155 ~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~  234 (347)
T 3hfq_A          155 AVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPA  234 (347)
T ss_dssp             EEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCT
T ss_pred             EEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCC
Confidence            7666778899999998 454322  122222 267889999999976664 5678999999874  4432  2221111 


Q ss_pred             ----cceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC---CceEEEEeeecCCCeEEEEEcCCCCEEEEEeC-CCc
Q 015490          252 ----DELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT---TWKRIRTKQVVREPVSSFNVSADGKLLAVGTA-SGD  323 (406)
Q Consensus       252 ----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~---~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~  323 (406)
                          ...+..++|+|+++.     +.++...++.|.+||+.   ..+.+..+..+...+..++|+|||++|++++. ++.
T Consensus       235 ~~~~~~~~~~i~~spdG~~-----l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~  309 (347)
T 3hfq_A          235 DYTAHNGAAAIRLSHDGHF-----LYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDN  309 (347)
T ss_dssp             TCCSCCEEEEEEECTTSCE-----EEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTE
T ss_pred             CCCCCCcceeEEECCCCCE-----EEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCc
Confidence                135778999999985     33445568899999987   23455556555566789999999999988876 488


Q ss_pred             EEEE--ECCCceEEE
Q 015490          324 ISII--DSSSLQVRT  336 (406)
Q Consensus       324 i~i~--d~~~~~~~~  336 (406)
                      |.+|  |..+++...
T Consensus       310 v~v~~~d~~tg~l~~  324 (347)
T 3hfq_A          310 ATLYARDLTSGKLSL  324 (347)
T ss_dssp             EEEEEECTTTCCEEE
T ss_pred             EEEEEEeCCCCeEEe
Confidence            9999  555666543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.85  E-value=7.9e-18  Score=152.82  Aligned_cols=271  Identities=15%  Similarity=0.163  Sum_probs=171.0

Q ss_pred             CCCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe--cCCeEEEEEec
Q 015490           66 IRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDE  143 (406)
Q Consensus        66 ~~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~  143 (406)
                      +++++.++++...+.    ..+.+.++.++.....+  +.+.....+...+..+++  ++++++++.  ++.+.+|+++.
T Consensus        58 spdg~~l~~~~~~~~----~~~~v~~~~~~~~~g~~--~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~  129 (361)
T 3scy_A           58 SADGKFVYSVNEFSK----DQAAVSAFAFDKEKGTL--HLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQ  129 (361)
T ss_dssp             CTTSSEEEEEECCSS----TTCEEEEEEEETTTTEE--EEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCT
T ss_pred             CCCCCEEEEEEccCC----CCCcEEEEEEeCCCCcE--EEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCC
Confidence            456777777654321    12456777777754332  344455556677788888  888888876  55566666543


Q ss_pred             ccccceeeccee--ccce-eeecccccCcEEEEEECCCCCEEEEee-CCCeEEEEeCCCcce------E-------eeee
Q 015490          144 VENTEIRRLGVK--ISEK-VLSQLENVGQQLALTFDSEGTIFAAGS-ENGNLRVFKWPSLEI------I-------LNES  206 (406)
Q Consensus       144 ~~~~~~~~~~~~--~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~-~dg~i~vwd~~~~~~------~-------~~~~  206 (406)
                        ......+...  .... ..........+.+++|+|||+++++++ .++.|++|++.....      +       ....
T Consensus       130 --~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~  207 (361)
T 3scy_A          130 --DGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV  207 (361)
T ss_dssp             --TSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC
T ss_pred             --CCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec
Confidence              2221111000  0000 000011123468899999999666554 478999999875431      1       1122


Q ss_pred             ccCCceeEEEEccCCCEEEEEe-CCCCEEEEEcCCCeee--eeccc--CCcceEEEEEEEcCCCCceEEEEEEEcCC-Cc
Q 015490          207 EAHASVKDLSFSPDGKFLVSLG-NRGPGRVWDLASSAVA--TPLAK--ENDELFASCRFSPLNNEDYVLYIAAITDR-GA  280 (406)
Q Consensus       207 ~~~~~i~~~~~s~~~~~l~s~s-~d~~i~iwd~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~  280 (406)
                      .....+..++|+|||+++++++ .++.|.+||+.+++..  ..+..  .+......++|+|+++.     +.++... ++
T Consensus       208 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~-----l~v~~~~~~~  282 (361)
T 3scy_A          208 APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKY-----LYASNRLKAD  282 (361)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSE-----EEEEECSSSC
T ss_pred             CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCE-----EEEECCCCCC
Confidence            2334678999999999888777 6889999999877542  22211  12234578999999985     4444455 78


Q ss_pred             EEEEEeCC--Cce--EEEEeeecCCCeEEEEEcCCCCEEEEEe-CCCcEEEE--ECCCceEEEEeecccccceEEEEEc
Q 015490          281 SIVTWNTT--TWK--RIRTKQVVREPVSSFNVSADGKLLAVGT-ASGDISII--DSSSLQVRTAVKKAHLGIVTALAFS  352 (406)
Q Consensus       281 ~i~~~d~~--~~~--~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~i~i~--d~~~~~~~~~~~~~~~~~v~~~~~s  352 (406)
                      .|.+|++.  +++  .+..+.. ...+..++|+|||++|++++ .++.|.+|  |..+++........+...+.|+.|.
T Consensus       283 ~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          283 GVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             EEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             EEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            99999985  444  3444444 45678999999999999888 57889996  5556766554432355678888886

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.84  E-value=9.2e-20  Score=163.57  Aligned_cols=199  Identities=11%  Similarity=0.041  Sum_probs=150.1

Q ss_pred             cEEEEEECCCCCEE-EEeeCCCeEEEEeCCCcceEeeeeccC-----CceeEEEEccCCCEEEEEe------------CC
Q 015490          169 QQLALTFDSEGTIF-AAGSENGNLRVFKWPSLEIILNESEAH-----ASVKDLSFSPDGKFLVSLG------------NR  230 (406)
Q Consensus       169 ~v~~~~~s~~g~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~s~s------------~d  230 (406)
                      .+..++|+|+|+.+ +++..++.|.+||+.+++....+....     ..+.+++|+|+|+++++++            .+
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence            47789999999765 455667899999999988776654322     1578899999999998886            57


Q ss_pred             CCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcC
Q 015490          231 GPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSA  310 (406)
Q Consensus       231 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp  310 (406)
                      +.|.+||+.+++....+...  ..+..++|+|+++.     +++.   ++.|++||+.+++....+..+.. ...+.|+|
T Consensus       115 ~~i~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~-----l~~~---~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~  183 (337)
T 1pby_B          115 TRVALYDAETLSRRKAFEAP--RQITMLAWARDGSK-----LYGL---GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQP  183 (337)
T ss_dssp             CEEEEEETTTTEEEEEEECC--SSCCCEEECTTSSC-----EEEE---SSSEEEEETTTTEEEEEECSTTT-TTTTBCCC
T ss_pred             ceEEEEECCCCcEEEEEeCC--CCcceeEECCCCCE-----EEEe---CCeEEEEECCCCcEeeeeecccc-CCCceeCC
Confidence            99999999998887766542  23567899999986     2222   57899999999988877765431 11347899


Q ss_pred             CCCEEEEEeCCC------------------------cEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCc
Q 015490          311 DGKLLAVGTASG------------------------DISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSS  366 (406)
Q Consensus       311 ~~~~l~~~~~dg------------------------~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~  366 (406)
                      +++.++..+..+                        .|.+||+.+++........+...+.+++|+|+|++++++  ++.
T Consensus       184 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~  261 (337)
T 1pby_B          184 DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNV  261 (337)
T ss_dssp             BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESE
T ss_pred             CccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCe
Confidence            998776554432                        468999998877522222455678899999999999887  789


Q ss_pred             EEEEEecCCcCCCC
Q 015490          367 VRVTVIEDKKKSGG  380 (406)
Q Consensus       367 i~iw~~~~~~~~~~  380 (406)
                      |++||+.+++.+..
T Consensus       262 v~~~d~~~~~~~~~  275 (337)
T 1pby_B          262 LESFDLEKNASIKR  275 (337)
T ss_dssp             EEEEETTTTEEEEE
T ss_pred             EEEEECCCCcCcce
Confidence            99999988776543

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.83  E-value=1.5e-19  Score=179.76  Aligned_cols=250  Identities=10%  Similarity=0.058  Sum_probs=163.5

Q ss_pred             CCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCC-----
Q 015490          114 DLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSEN-----  188 (406)
Q Consensus       114 ~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-----  188 (406)
                      ....+++|+|||.+++++ ++.+.+  |+..+++....+...    ...  ........++|||||++|+.++.+     
T Consensus        17 ~~~~~~~w~~dg~~~~~~-~~~i~~--~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~Spdg~~l~~~~~~~~~~r   87 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ-ENNILV--FNAEYGNSSVFLENS----TFD--EFGHSINDYSISPDGQFILLEYNYVKQWR   87 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE-TTEEEE--EETTTCCEEEEECTT----TTT--TCCSCCCEEEECTTSSEEEEEEEEEECSS
T ss_pred             ccccccEECCCCcEEEEc-CCcEEE--EECCCCceEEEEech----hhh--hhcccccceEECCCCCEEEEEECCeeeEE
Confidence            345689999999888876 766555  555444332221110    000  001123458999999999998875     


Q ss_pred             ----CeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceE---------
Q 015490          189 ----GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELF---------  255 (406)
Q Consensus       189 ----g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~---------  255 (406)
                          +.+.+||+.+++.. .+..+...+..++|||||+.|+.+. ++.|++||+.+++..+.........+         
T Consensus        88 ~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~  165 (740)
T 4a5s_A           88 HSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVY  165 (740)
T ss_dssp             SCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHH
T ss_pred             EccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccc
Confidence                56779999998755 4555666899999999999999885 67999999988775543222211111         


Q ss_pred             --------EEEEEEcCCCCceEEEEEEEc--------------------------------CCCcEEEEEeCCC---ce-
Q 015490          256 --------ASCRFSPLNNEDYVLYIAAIT--------------------------------DRGASIVTWNTTT---WK-  291 (406)
Q Consensus       256 --------~~~~~~~~~~~~~~l~~~~~~--------------------------------~~~~~i~~~d~~~---~~-  291 (406)
                              ..+.|+|+++.  +.+...-.                                .....|++||+.+   ++ 
T Consensus       166 ~ee~~~~~~~~~wSpDg~~--la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~  243 (740)
T 4a5s_A          166 EEEVFSAYSALWWSPNGTF--LAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTN  243 (740)
T ss_dssp             HHHTSSSSBCEEECTTSSE--EEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSC
T ss_pred             cchhcCCCcceEECCCCCE--EEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCc
Confidence                    24889999986  22221100                                0112689999998   73 


Q ss_pred             -EEEEeee------cCCCeEEEEEcCCCCEEEEEeC----CCcEEEEECCCce----EE--E-EeecccccceE-----E
Q 015490          292 -RIRTKQV------VREPVSSFNVSADGKLLAVGTA----SGDISIIDSSSLQ----VR--T-AVKKAHLGIVT-----A  348 (406)
Q Consensus       292 -~~~~~~~------~~~~i~~~~~sp~~~~l~~~~~----dg~i~i~d~~~~~----~~--~-~~~~~~~~~v~-----~  348 (406)
                       ....+..      +...+..++|+|||+.++....    +..|++||+.+++    +.  . .+...|...|.     .
T Consensus       244 ~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~  323 (740)
T 4a5s_A          244 ATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSE  323 (740)
T ss_dssp             CCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCC
T ss_pred             ceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCC
Confidence             2233332      5667899999999997766543    3369999998876    21  1 11124665554     7


Q ss_pred             EEEcCCCCeEE-EEEC-CC--cEEEEEecCCc
Q 015490          349 LAFSYDSRALV-SASM-DS--SVRVTVIEDKK  376 (406)
Q Consensus       349 ~~~sp~~~~l~-s~s~-dg--~i~iw~~~~~~  376 (406)
                      +.|+|||+.|+ ..+. +|  .|++|++.+++
T Consensus       324 p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~  355 (740)
T 4a5s_A          324 PHFTLDGNSFYKIISNEEGYRHICYFQIDKKD  355 (740)
T ss_dssp             CEECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred             ceEcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence            89999999877 6653 34  57778877654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.83  E-value=1.9e-19  Score=178.65  Aligned_cols=261  Identities=13%  Similarity=0.095  Sum_probs=173.2

Q ss_pred             EEEEEecCCCCccccceeEEecCCC---CceEEEEccCCCeEEEEec--------CCeEEEEEecccccceeecceeccc
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSD---LPYRMAIHPHGDGIICALQ--------NSCRLFEWDEVENTEIRRLGVKISE  158 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~sp~~~~l~~~~~--------~~~~i~~~~~~~~~~~~~~~~~~~~  158 (406)
                      .++.|+..+..    ....+.+|..   .+.+++|||||++|+++++        ....||.|+..+++....       
T Consensus        37 ~i~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~-------  105 (719)
T 1z68_A           37 NIVLYNIETGQ----SYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG-------  105 (719)
T ss_dssp             CEEEEESSSCC----EEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-------
T ss_pred             CEEEEEcCCCc----EEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc-------
Confidence            45666665532    3334444433   4899999999999998764        135677777665433110       


Q ss_pred             eeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccC-Cce-----------------eEEEEccC
Q 015490          159 KVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAH-ASV-----------------KDLSFSPD  220 (406)
Q Consensus       159 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~i-----------------~~~~~s~~  220 (406)
                         ..+  ...+..++|||||+.|+++. ++.|++|++.+++......... ..|                 .+++||||
T Consensus       106 ---~~l--~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPD  179 (719)
T 1z68_A          106 ---NEL--PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPN  179 (719)
T ss_dssp             ---SCC--CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTT
T ss_pred             ---eec--CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCC
Confidence               011  24577899999999999985 7899999998887654332221 112                 48999999


Q ss_pred             CCEEEEEeCCC----------------------------------CEEEEEcCCCeee--eecc-----cCCcceEEEEE
Q 015490          221 GKFLVSLGNRG----------------------------------PGRVWDLASSAVA--TPLA-----KENDELFASCR  259 (406)
Q Consensus       221 ~~~l~s~s~d~----------------------------------~i~iwd~~~~~~~--~~~~-----~~~~~~~~~~~  259 (406)
                      |++|++++.|.                                  .|++||+.+++..  ..+.     ..+...+..++
T Consensus       180 G~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (719)
T 1z68_A          180 GKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLT  259 (719)
T ss_dssp             SSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEE
T ss_pred             CCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeE
Confidence            99999987652                                  7889999887652  1121     12455688999


Q ss_pred             EEcCCCCceEEEEEEEc--CCCcEEEEEe----CCCceEEEEe----eecCCCeE-----EEEEcCCCCEEEE--EeCCC
Q 015490          260 FSPLNNEDYVLYIAAIT--DRGASIVTWN----TTTWKRIRTK----QVVREPVS-----SFNVSADGKLLAV--GTASG  322 (406)
Q Consensus       260 ~~~~~~~~~~l~~~~~~--~~~~~i~~~d----~~~~~~~~~~----~~~~~~i~-----~~~~sp~~~~l~~--~~~dg  322 (406)
                      |+|+++   +++ ....  .....|++||    ..+++....+    ..+...+.     .+.|+|||+.|+.  ...+|
T Consensus       260 ~SpD~~---~~~-~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g  335 (719)
T 1z68_A          260 WVTDER---VCL-QWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDG  335 (719)
T ss_dssp             ESSSSE---EEE-EEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTS
T ss_pred             EeCCCe---EEE-EEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCC
Confidence            999964   222 2222  2235688999    8777655444    34555565     7899999996654  33455


Q ss_pred             --cEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECC-----CcEEEEEecC
Q 015490          323 --DISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMD-----SSVRVTVIED  374 (406)
Q Consensus       323 --~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d-----g~i~iw~~~~  374 (406)
                        .|.+||+.+++ ...+. .+...+..+.++ +++.|+..+.+     +.+++|.+..
T Consensus       336 ~~~l~~~~~~~~~-~~~lt-~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          336 YKHIHYIKDTVEN-AIQIT-SGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             CEEEEEESSCSTT-CEECS-CSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred             ceEEEEEECCCCc-eEecc-cCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence              57778887766 33443 455567777777 88877766655     8899998864

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.82  E-value=7e-19  Score=161.29  Aligned_cols=255  Identities=13%  Similarity=0.045  Sum_probs=167.3

Q ss_pred             cceeEEecCCCCceE-----EEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEE
Q 015490          104 QPVAELRTDSDLPYR-----MAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTF  175 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~-----~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~  175 (406)
                      ..+..+..|...+..     .+|+|||++|++++  ++...||.++..+++....            ..++ ..+..+.|
T Consensus        21 ~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l------------t~~~~~~~~~~~~   88 (388)
T 3pe7_A           21 AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL------------TEGRGDNTFGGFL   88 (388)
T ss_dssp             CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC------------CCSSCBCSSSCEE
T ss_pred             cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe------------eeCCCCCccceEE
Confidence            355566666655555     78999999999887  4666899998765443221            1222 23335689


Q ss_pred             CCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEE--EccCCCEEEEEe----------------------CCC
Q 015490          176 DSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLS--FSPDGKFLVSLG----------------------NRG  231 (406)
Q Consensus       176 s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~--~s~~~~~l~s~s----------------------~d~  231 (406)
                      +|||+.|+.++.++.|++||+.+++.......+...+....  +++++++++...                      .+.
T Consensus        89 spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (388)
T 3pe7_A           89 SPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCC  168 (388)
T ss_dssp             CTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCE
T ss_pred             cCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcc
Confidence            99999999999999999999999887655554444444344  489999887432                      346


Q ss_pred             CEEEEEcCCCeeeeecccCCcceEEEEEEEc-CCCCceEEEEEEEcCC---CcEEEEEeCCCceEEEEeeecC--CCeEE
Q 015490          232 PGRVWDLASSAVATPLAKENDELFASCRFSP-LNNEDYVLYIAAITDR---GASIVTWNTTTWKRIRTKQVVR--EPVSS  305 (406)
Q Consensus       232 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~---~~~i~~~d~~~~~~~~~~~~~~--~~i~~  305 (406)
                      .|.+||+.+++......  ....+..+.|+| +++.   +++......   ...|+++|...++. ..+..+.  ..+..
T Consensus       169 ~l~~~d~~~g~~~~l~~--~~~~~~~~~~sp~dg~~---l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~  242 (388)
T 3pe7_A          169 RLMRVDLKTGESTVILQ--ENQWLGHPIYRPYDDST---VAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTH  242 (388)
T ss_dssp             EEEEEETTTCCEEEEEE--ESSCEEEEEEETTEEEE---EEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEE
T ss_pred             eEEEEECCCCceEEeec--CCccccccEECCCCCCE---EEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCccccc
Confidence            79999999887554432  233477899999 8875   222221111   44888999876543 3333333  24778


Q ss_pred             EEEcCCCCEEEEEeC-CC----cEEEEECCCceEEEEee-cccccc---eEEEEEcCCCCeEEEE---------ECCCcE
Q 015490          306 FNVSADGKLLAVGTA-SG----DISIIDSSSLQVRTAVK-KAHLGI---VTALAFSYDSRALVSA---------SMDSSV  367 (406)
Q Consensus       306 ~~~sp~~~~l~~~~~-dg----~i~i~d~~~~~~~~~~~-~~~~~~---v~~~~~sp~~~~l~s~---------s~dg~i  367 (406)
                      +.|+|||+.|+..+. ++    .|++||+.+++...... .++...   ...+.|+|||+.|+..         ..+..|
T Consensus       243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i  322 (388)
T 3pe7_A          243 EFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFL  322 (388)
T ss_dssp             EEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEE
T ss_pred             ceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEE
Confidence            899999998766543 22    39999999887533221 111110   1224799999988754         446689


Q ss_pred             EEEEecCCc
Q 015490          368 RVTVIEDKK  376 (406)
Q Consensus       368 ~iw~~~~~~  376 (406)
                      ++||+.+++
T Consensus       323 ~~~d~~~~~  331 (388)
T 3pe7_A          323 YVFNMKNGT  331 (388)
T ss_dssp             EEEETTTTE
T ss_pred             EEEeccCCc
Confidence            999998765

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.82  E-value=1.6e-17  Score=148.89  Aligned_cols=248  Identities=15%  Similarity=0.151  Sum_probs=177.5

Q ss_pred             CCCceEEEEccCCCeEEEEecC-C----------------------eEEEEEecccccceeecceeccceeeecccccCc
Q 015490          113 SDLPYRMAIHPHGDGIICALQN-S----------------------CRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQ  169 (406)
Q Consensus       113 ~~~v~~~~~sp~~~~l~~~~~~-~----------------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (406)
                      -+.|.+++++|+|+.+++...+ .                      ..|+.++..+++....+.          ...-..
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~----------~~~~~~   92 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG----------KNLFYL   92 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC----------TTTCSS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC----------CCccCC
Confidence            3678999999999988776533 1                      145666655443322110          012246


Q ss_pred             EEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-eEeeee---------ccCCceeEEEEcc-CCCEEEEEe-CCCCEEEEE
Q 015490          170 QLALTFDSEGTIFAAGSENGNLRVFKWPSLE-IILNES---------EAHASVKDLSFSP-DGKFLVSLG-NRGPGRVWD  237 (406)
Q Consensus       170 v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~-~~~~~~---------~~~~~i~~~~~s~-~~~~l~s~s-~d~~i~iwd  237 (406)
                      ...++++++|+++++...++.|++||..... .+..+.         .+......++++| +++.+++.+ .++.|++||
T Consensus        93 p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~  172 (329)
T 3fvz_A           93 PHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS  172 (329)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC
T ss_pred             ceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc
Confidence            7899999999988888889999999975442 333331         2222688999999 788777776 689999999


Q ss_pred             cCCCeeeeecccCC---------cceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeee--cCCCeEEE
Q 015490          238 LASSAVATPLAKEN---------DELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQV--VREPVSSF  306 (406)
Q Consensus       238 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~i~~~  306 (406)
                       .+++....+....         -.....++++|++..     +.++...++.|++||..+++.+..+..  +...+.++
T Consensus       173 -~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~-----l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~  246 (329)
T 3fvz_A          173 -PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQ-----LCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAI  246 (329)
T ss_dssp             -TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTE-----EEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEE
T ss_pred             -CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCE-----EEEEECCCCEEEEEECCCCcEEEEEeccccCCCccee
Confidence             4666666553211         123678999998553     445567789999999998888887743  34578899


Q ss_pred             EEcCCCCEEEEE-------eCCCcEEEEECCCceEEEEee--cccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490          307 NVSADGKLLAVG-------TASGDISIIDSSSLQVRTAVK--KAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       307 ~~sp~~~~l~~~-------~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      +++| +..+++.       ..+..|++||..+++.+..+.  ..+...+.+++++|+|.++++...+++|++|++....+
T Consensus       247 ~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~~~  325 (329)
T 3fvz_A          247 SYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEKME  325 (329)
T ss_dssp             EEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEECSS
T ss_pred             eecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcccc
Confidence            9999 4333332       334589999999999888873  24666789999999998888888999999999976443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.81  E-value=1.4e-16  Score=139.56  Aligned_cols=248  Identities=10%  Similarity=0.124  Sum_probs=169.8

Q ss_pred             cCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEE-CCCCCEEEEeeC-
Q 015490          111 TDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTF-DSEGTIFAAGSE-  187 (406)
Q Consensus       111 ~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~g~~l~~~~~-  187 (406)
                      ++-..+.++++++++..+++.. ++.  |+.|+.. ++....+...  .   ....+...+..+++ .++++++++... 
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~--i~~~d~~-g~~~~~~~~~--~---~~~~~~~~p~~i~~~~~~g~l~v~~~~~   98 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHR--IQIFDKE-GRFKFQFGEC--G---KRDSQLLYPNRVAVVRNSGDIIVTERSP   98 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTE--EEEECTT-SCEEEEECCB--S---SSTTCBSSEEEEEEETTTTEEEEEECGG
T ss_pred             CccCCCceEEECCCCCEEEEECCCCE--EEEECCC-CcEEEEeccc--C---CCcccccCceEEEEEcCCCeEEEEcCCC
Confidence            3446688999999998666654 454  4445543 3222222110  0   00012246789999 577777766643 


Q ss_pred             CCeEEEEeCCCcceEeeeecc-CCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeeccc-CCcceEEEEEEEcCCC
Q 015490          188 NGNLRVFKWPSLEIILNESEA-HASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAK-ENDELFASCRFSPLNN  265 (406)
Q Consensus       188 dg~i~vwd~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  265 (406)
                      ++.|.+|| .+++....+... ...+.+++++++|+.+++...++.|.+||.. ++....+.. .....+..++++++++
T Consensus        99 ~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~  176 (286)
T 1q7f_A           99 THQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQE  176 (286)
T ss_dssp             GCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSE
T ss_pred             CCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCC
Confidence            78999999 566666555332 2468999999999988777778899999964 555554432 2233477899999875


Q ss_pred             CceEEEEEEEcCCCcEEEEEeCCCceEEEEeeec--CCCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCceEEEEeeccc
Q 015490          266 EDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVV--REPVSSFNVSADGKLLAVGTASG-DISIIDSSSLQVRTAVKKAH  342 (406)
Q Consensus       266 ~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~i~~~~~sp~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~  342 (406)
                            +.++...++.|++||.. ++.+..+...  ...+..++++++|+++++...++ .|.+||. +++.+..+. .+
T Consensus       177 ------l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~-~~  247 (286)
T 1q7f_A          177 ------IFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALE-SK  247 (286)
T ss_dssp             ------EEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEE-ES
T ss_pred             ------EEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEc-cc
Confidence                  23444567899999985 4555555443  25689999999999888887776 9999996 466666664 33


Q ss_pred             c--cceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCC
Q 015490          343 L--GIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKS  378 (406)
Q Consensus       343 ~--~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~  378 (406)
                      .  ..+.+++++|+|+++++ +.|++|++|++.....+
T Consensus       248 ~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~pv  284 (286)
T 1q7f_A          248 VKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLAPV  284 (286)
T ss_dssp             SCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCCCT
T ss_pred             CCCCcceeEEECCCCcEEEE-CCCCeEEEEEccccccc
Confidence            2  34779999999987776 67999999998776554

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.81  E-value=1e-17  Score=164.64  Aligned_cols=252  Identities=17%  Similarity=0.065  Sum_probs=168.8

Q ss_pred             ceeEEecCCCCce---------EEEEc--cCCCe-EEEEecCCeEEEEEecc--c-ccceeecceeccceeeeccc---c
Q 015490          105 PVAELRTDSDLPY---------RMAIH--PHGDG-IICALQNSCRLFEWDEV--E-NTEIRRLGVKISEKVLSQLE---N  166 (406)
Q Consensus       105 ~~~~~~~h~~~v~---------~~~~s--p~~~~-l~~~~~~~~~i~~~~~~--~-~~~~~~~~~~~~~~~~~~~~---~  166 (406)
                      ....+..|...+.         ...|+  |||+. |+.+.+...+||.++..  . +. ...+.         ...   +
T Consensus        59 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~---------~~~~~~~  128 (662)
T 3azo_A           59 AEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLT---------PVSAVGG  128 (662)
T ss_dssp             CEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECS---------CCCCSTT
T ss_pred             CcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEecc---------CCccCCC
Confidence            3455666666666         66666  99999 88877667789998864  2 22 11111         111   2


Q ss_pred             cCcEEEEEECCCCCEEEEeeCC----------CeEEEEeCCC------cceEeeee-ccCCceeEEEEccCCCEEEEEeC
Q 015490          167 VGQQLALTFDSEGTIFAAGSEN----------GNLRVFKWPS------LEIILNES-EAHASVKDLSFSPDGKFLVSLGN  229 (406)
Q Consensus       167 ~~~v~~~~~s~~g~~l~~~~~d----------g~i~vwd~~~------~~~~~~~~-~~~~~i~~~~~s~~~~~l~s~s~  229 (406)
                      ...+..++|||||+.|++++.+          ..|++||+.+      ++.. .+. .+...+..++|||||++|++++.
T Consensus       129 ~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~  207 (662)
T 3azo_A          129 GLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAW  207 (662)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEE
T ss_pred             CccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEEC
Confidence            3567899999999999998876          5899999987      5543 444 55567888999999999998875


Q ss_pred             C--------CCEEEEEcC-CC--eeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCc--EEEEEeCCCceEEEEe
Q 015490          230 R--------GPGRVWDLA-SS--AVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGA--SIVTWNTTTWKRIRTK  296 (406)
Q Consensus       230 d--------~~i~iwd~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~i~~~d~~~~~~~~~~  296 (406)
                      +        ..|++||+. ++  .....+...+...+..+.|+|+++.      +++++.++  .|++||+.+++.....
T Consensus       208 ~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l------~~~~~~~~~~~l~~~~~~~~~~~~l~  281 (662)
T 3azo_A          208 DHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSL------IVATDRTGWWNLHRVDPATGAATQLC  281 (662)
T ss_dssp             CTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCE------EEEECTTSSCEEEEECTTTCCEEESS
T ss_pred             CCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeE------EEEECCCCCeEEEEEECCCCceeecc
Confidence            5        379999998 56  2333443333456789999999972      23334555  8888888776654333


Q ss_pred             eecCCC--------eEEEEEcCCCCEEEEEeCCCcEEEE--ECCCceEEEEeecccccceEEE-EEcCCCCeEEEEECCC
Q 015490          297 QVVREP--------VSSFNVSADGKLLAVGTASGDISII--DSSSLQVRTAVKKAHLGIVTAL-AFSYDSRALVSASMDS  365 (406)
Q Consensus       297 ~~~~~~--------i~~~~~sp~~~~l~~~~~dg~i~i~--d~~~~~~~~~~~~~~~~~v~~~-~~sp~~~~l~s~s~dg  365 (406)
                      ..+...        +..++|+|+++++++++. +.++||  |+.+++ +..+. .|...+..+ +++++.-++++++.+.
T Consensus       282 ~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~s~~~~~~~~~~~~~~~  358 (662)
T 3azo_A          282 RREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAA-GPWTEWAATLTVSGTRAVGVAASPRT  358 (662)
T ss_dssp             CCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECC-SSCCEEEEEEEEETTEEEEEEEETTE
T ss_pred             cccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEec-CCCCeEEEEEecCCCEEEEEEcCCCC
Confidence            322211        467899999999999998 998888  666565 45554 566677766 4443333344555555


Q ss_pred             c--EEEEEecCCc
Q 015490          366 S--VRVTVIEDKK  376 (406)
Q Consensus       366 ~--i~iw~~~~~~  376 (406)
                      .  |.+||+.+++
T Consensus       359 ~~~i~~~d~~~g~  371 (662)
T 3azo_A          359 AYEVVELDTVTGR  371 (662)
T ss_dssp             EEEEEEEETTTCC
T ss_pred             CCEEEEEECCCCc
Confidence            4  4444554543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.81  E-value=1.9e-17  Score=150.60  Aligned_cols=203  Identities=9%  Similarity=0.062  Sum_probs=142.1

Q ss_pred             CcEEEEEECCCCCEEEEeeCCCeEEEEeCC-CcceEeeeec-cCCceeEEEEccCCCE--EEEEe-------------CC
Q 015490          168 GQQLALTFDSEGTIFAAGSENGNLRVFKWP-SLEIILNESE-AHASVKDLSFSPDGKF--LVSLG-------------NR  230 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~-~~~~~~~~~~-~~~~i~~~~~s~~~~~--l~s~s-------------~d  230 (406)
                      ..+..++|+|||++|++++.+ .|.+|++. +++....... ..+.+.+++|+|||++  +++++             .+
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~  118 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA  118 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence            457789999999999998887 99999997 7765432221 1123567999999994  44543             68


Q ss_pred             CCEEEEEcC-CCeeeeeccc---CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC-CceEE--EEeee--cCC
Q 015490          231 GPGRVWDLA-SSAVATPLAK---ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT-TWKRI--RTKQV--VRE  301 (406)
Q Consensus       231 ~~i~iwd~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~-~~~~~--~~~~~--~~~  301 (406)
                      +.+.+|++. +++....+..   .....+.+++|+|+++.     ++++...++.|++||+. +++..  ..+..  +..
T Consensus       119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~-----l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~  193 (365)
T 1jof_A          119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETY-----LYSADLTANKLWTHRKLASGEVELVGSVDAPDPGD  193 (365)
T ss_dssp             CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSE-----EEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTC
T ss_pred             ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCE-----EEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCC
Confidence            899999997 4554433321   23445789999999984     33444456899999998 66543  23332  245


Q ss_pred             CeEEEEEcCCCCEEEEEeC-CCcEEEEECC--CceEEE---Eeec------cccc------ceEEEE-EcCCCCeEEEEE
Q 015490          302 PVSSFNVSADGKLLAVGTA-SGDISIIDSS--SLQVRT---AVKK------AHLG------IVTALA-FSYDSRALVSAS  362 (406)
Q Consensus       302 ~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~--~~~~~~---~~~~------~~~~------~v~~~~-~sp~~~~l~s~s  362 (406)
                      .+..++|+|||+++++++. ++.|.+|+++  +++...   .+..      +|..      .+..++ |+|||++|++++
T Consensus       194 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~  273 (365)
T 1jof_A          194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS  273 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred             CCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEEC
Confidence            6899999999999988875 6889999765  455421   2211      1222      578999 999999987765


Q ss_pred             CC-C-----cEEEEEec-CCc
Q 015490          363 MD-S-----SVRVTVIE-DKK  376 (406)
Q Consensus       363 ~d-g-----~i~iw~~~-~~~  376 (406)
                      .+ +     +|.+|++. +++
T Consensus       274 ~~~~~~~~~~i~v~~~~~~g~  294 (365)
T 1jof_A          274 RANKFELQGYIAGFKLRDCGS  294 (365)
T ss_dssp             EESSTTSCCEEEEEEECTTSC
T ss_pred             CCCCCCCCCeEEEEEECCCCC
Confidence            43 2     89999996 443

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.80  E-value=8.4e-19  Score=161.06  Aligned_cols=239  Identities=11%  Similarity=0.024  Sum_probs=160.2

Q ss_pred             ceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeecccccCc-EEEEEECCCCCEEEEeeCCCeEE
Q 015490          116 PYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQ-QLALTFDSEGTIFAAGSENGNLR  192 (406)
Q Consensus       116 v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~g~~l~~~~~dg~i~  192 (406)
                      +..++|+|||++|+.+.  ++...||.++..+++....            ..+... ...+.|+|||++|+.++.++.|+
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l------------~~~~~~~~~~~~~spdg~~l~~~~~~~~l~  105 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQL------------TEGKGDNTFGGFISTDERAFFYVKNELNLM  105 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEEC------------CCSSCBCTTTCEECTTSSEEEEEETTTEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEe------------ecCCCCccccceECCCCCEEEEEEcCCcEE
Confidence            78889999999988775  4556788888765432111            112222 22368999999999999999999


Q ss_pred             EEeCCCcceEeeeeccCCceeE-------------------EEEccCCCEEEEE-----eCCCCEEEEEcCCCeeeeecc
Q 015490          193 VFKWPSLEIILNESEAHASVKD-------------------LSFSPDGKFLVSL-----GNRGPGRVWDLASSAVATPLA  248 (406)
Q Consensus       193 vwd~~~~~~~~~~~~~~~~i~~-------------------~~~s~~~~~l~s~-----s~d~~i~iwd~~~~~~~~~~~  248 (406)
                      +||+.+++.......+......                   +.|+|+++.++..     ..+..|++||+.+++......
T Consensus       106 ~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~  185 (396)
T 3c5m_A          106 KVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ  185 (396)
T ss_dssp             EEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE
T ss_pred             EEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc
Confidence            9999888765444333332222                   3567777766654     356689999998887655442


Q ss_pred             cCCcceEEEEEEEc-CCCCceEEEEEEEcCCC----cEEEEEeCCCceEEEEeeec--CCCeEEEEEcCCCCEEEEEeCC
Q 015490          249 KENDELFASCRFSP-LNNEDYVLYIAAITDRG----ASIVTWNTTTWKRIRTKQVV--REPVSSFNVSADGKLLAVGTAS  321 (406)
Q Consensus       249 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~----~~i~~~d~~~~~~~~~~~~~--~~~i~~~~~sp~~~~l~~~~~d  321 (406)
                        ....+..+.|+| ++..   ++ .+.....    ..|++||+.+++... +..+  ...+..+.|+|||++|+.++.+
T Consensus       186 --~~~~~~~~~~sp~dg~~---l~-~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~spdg~~l~~~~~~  258 (396)
T 3c5m_A          186 --DTAWLGHPIYRPFDDST---VG-FCHEGPHDLVDARMWLVNEDGSNVRK-IKEHAEGESCTHEFWIPDGSAMAYVSYF  258 (396)
T ss_dssp             --ESSCEEEEEEETTEEEE---EE-EEECSCSSSCSCCCEEEETTSCCCEE-SSCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred             --CCcccccceECCCCCCE---EE-EEecCCCCCCCceEEEEECCCCceeE-eeccCCCccccceEECCCCCEEEEEecC
Confidence              234577899999 6664   22 2222222    579999987655332 3222  2247789999999988777553


Q ss_pred             -----CcEEEEECCCceEEEEeecccccceEEEEEcC-CCCeEEEEE----------------CCCcEEEEEecCCcC
Q 015490          322 -----GDISIIDSSSLQVRTAVKKAHLGIVTALAFSY-DSRALVSAS----------------MDSSVRVTVIEDKKK  377 (406)
Q Consensus       322 -----g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~s----------------~dg~i~iw~~~~~~~  377 (406)
                           +.|++||+.+++......  ... .. +.|+| ||+++++++                .+..|++||+.+++.
T Consensus       259 ~~~~~~~l~~~d~~~g~~~~l~~--~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~  332 (396)
T 3c5m_A          259 KGQTDRVIYKANPETLENEEVMV--MPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA  332 (396)
T ss_dssp             TTTCCEEEEEECTTTCCEEEEEE--CCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred             CCCccceEEEEECCCCCeEEeee--CCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence                 449999998876544332  112 23 89999 999888765                347899999987653

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.80  E-value=4.4e-17  Score=162.01  Aligned_cols=261  Identities=14%  Similarity=0.057  Sum_probs=164.3

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCc-----eEEEEccCCCeEEEEec-CC-------eEEEEEecccccceeecceec
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLP-----YRMAIHPHGDGIICALQ-NS-------CRLFEWDEVENTEIRRLGVKI  156 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v-----~~~~~sp~~~~l~~~~~-~~-------~~i~~~~~~~~~~~~~~~~~~  156 (406)
                      .+..|+..++.    ....+.+|....     ..++|||||++|+.+.+ ..       ..+|.|+..+++..       
T Consensus        37 ~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-------  105 (740)
T 4a5s_A           37 NILVFNAEYGN----SSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-------  105 (740)
T ss_dssp             EEEEEETTTCC----EEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-------
T ss_pred             cEEEEECCCCc----eEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-------
Confidence            46667765532    344566665432     34789999999988763 22       45677777654321       


Q ss_pred             cceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeee-ccCCce-----------------eEEEEc
Q 015490          157 SEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNES-EAHASV-----------------KDLSFS  218 (406)
Q Consensus       157 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~i-----------------~~~~~s  218 (406)
                           ....+...+...+|||||+.||.+. ++.|++|++.+++...... ++...+                 ..+.||
T Consensus       106 -----~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wS  179 (740)
T 4a5s_A          106 -----TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWS  179 (740)
T ss_dssp             -----CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEEC
T ss_pred             -----EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEEC
Confidence                 1122346789999999999999884 6899999998877553322 221112                 358999


Q ss_pred             cCCCEEEEEeCCC------------------------------------CEEEEEcCC---Ce--eeeeccc-----CCc
Q 015490          219 PDGKFLVSLGNRG------------------------------------PGRVWDLAS---SA--VATPLAK-----END  252 (406)
Q Consensus       219 ~~~~~l~s~s~d~------------------------------------~i~iwd~~~---~~--~~~~~~~-----~~~  252 (406)
                      |||++|+.++.|.                                    .|++||+.+   ++  ....+..     .+.
T Consensus       180 pDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~  259 (740)
T 4a5s_A          180 PNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGD  259 (740)
T ss_dssp             TTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSC
T ss_pred             CCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCC
Confidence            9999999875322                                    478899988   63  2222322     245


Q ss_pred             ceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCce----EE--EEe--eecCCCeE-----EEEEcCCCCEEE-EE
Q 015490          253 ELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK----RI--RTK--QVVREPVS-----SFNVSADGKLLA-VG  318 (406)
Q Consensus       253 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~----~~--~~~--~~~~~~i~-----~~~~sp~~~~l~-~~  318 (406)
                      ..+..++|+|+++.  +++.......+..|++||+.+++    +.  ..+  ..+...+.     .+.|+|||+.|+ ..
T Consensus       260 ~~~~~~~wspdg~~--~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~  337 (740)
T 4a5s_A          260 HYLCDVTWATQERI--SLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKII  337 (740)
T ss_dssp             EEEEEEEEEETTEE--EEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEE
T ss_pred             eEEEEEEEeCCCeE--EEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEE
Confidence            67889999999973  23233333445689999998876    21  111  33444433     788999999887 66


Q ss_pred             eC-C--CcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECC-----CcEEEEEe
Q 015490          319 TA-S--GDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMD-----SSVRVTVI  372 (406)
Q Consensus       319 ~~-d--g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d-----g~i~iw~~  372 (406)
                      +. +  ..|++||+.+++......  ....|..+.+ +|++.|+..+..     +...||.+
T Consensus       338 s~~~G~~~l~~~~~~~~~~~~lT~--g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v  396 (740)
T 4a5s_A          338 SNEEGYRHICYFQIDKKDCTFITK--GTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKI  396 (740)
T ss_dssp             ECTTSCEEEEEEETTCSSCEESCC--SSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEE
T ss_pred             EcCCCceEEEEEECCCCceEeccc--CCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEE
Confidence            54 3  458889988766554332  3445555442 446665544432     34555554

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.79  E-value=1.4e-16  Score=143.73  Aligned_cols=242  Identities=8%  Similarity=0.036  Sum_probs=162.7

Q ss_pred             EEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-c---CCeEEEEEecccccceeecceeccceeeecc
Q 015490           89 VLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-Q---NSCRLFEWDEVENTEIRRLGVKISEKVLSQL  164 (406)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (406)
                      -.++.++.....     ...+    ..+..++|+|||++|+.+. +   +...||.++..+++....            .
T Consensus        43 ~~l~~~d~~~~~-----~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l------------~  101 (347)
T 2gop_A           43 NTIVIENLKNNA-----RRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKI------------L  101 (347)
T ss_dssp             EEEEEEETTTCC-----EEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEE------------E
T ss_pred             ceEEEEeCCCCc-----eEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEE------------E
Confidence            356667766532     2233    5688999999999998876 2   466799888765432211            1


Q ss_pred             cccCcEEEEEECCCCCEEEEeeCC---------------------------CeEEEEeCCCcceEeeeeccCCceeEEEE
Q 015490          165 ENVGQQLALTFDSEGTIFAAGSEN---------------------------GNLRVFKWPSLEIILNESEAHASVKDLSF  217 (406)
Q Consensus       165 ~~~~~v~~~~~s~~g~~l~~~~~d---------------------------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~  217 (406)
                      .... +..++|+|||+.|+.++.+                           ..|++||+.+++.+..+.. . .+..++|
T Consensus       102 ~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~  178 (347)
T 2gop_A          102 EAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIW  178 (347)
T ss_dssp             EESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEE
T ss_pred             cCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccC
Confidence            1223 8899999999988887642                           5799999988876344444 3 7889999


Q ss_pred             ccCCCEEEEEeCCC-------CEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcC------CCcEEEE
Q 015490          218 SPDGKFLVSLGNRG-------PGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITD------RGASIVT  284 (406)
Q Consensus       218 s~~~~~l~s~s~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~i~~  284 (406)
                      +||| .+++++.+.       ...||.+.+++. ..+..+  ..+..  ++|+++.   ++ .....      ....|++
T Consensus       179 spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~--~~~~~--~spdg~~---l~-~~~~~~~~~~~~~~~l~~  248 (347)
T 2gop_A          179 HRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK--VSFYA--VDSDGER---IL-LYGKPEKKYMSEHNKLYI  248 (347)
T ss_dssp             ETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE--ESEEE--EEECSSC---EE-EEECCSSSCCCSSCEEEE
T ss_pred             CCCe-EEEEEecccccccccccccEEEeCCCce-EEeccC--cceee--ECCCCCE---EE-EEEccccCCccccceEEE
Confidence            9999 777776542       445555445543 333322  23333  3999986   22 22212      1468999


Q ss_pred             EeCCCceEEEEeeecCCCeEE-EEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEEC
Q 015490          285 WNTTTWKRIRTKQVVREPVSS-FNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASM  363 (406)
Q Consensus       285 ~d~~~~~~~~~~~~~~~~i~~-~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~  363 (406)
                      ||  +++.......+...+.. +.|+ |+ ++++++.++.++|| +.+++....+  .+.+.|.+++|+|  .++++++.
T Consensus       249 ~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~--~~~~~v~~~~~s~--~~~~~~~~  319 (347)
T 2gop_A          249 YD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA--KGRHWIMGFDVDE--IVVYLKET  319 (347)
T ss_dssp             EC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE--CSSSEEEEEEESS--SEEEEEEC
T ss_pred             EC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe--cCCCeEEeeeeeC--cEEEEEcC
Confidence            99  55544333344566776 8999 88 88899999999999 8766654443  3577899999999  67777777


Q ss_pred             CCcE-EEEEec
Q 015490          364 DSSV-RVTVIE  373 (406)
Q Consensus       364 dg~i-~iw~~~  373 (406)
                      ++.. .+|.+.
T Consensus       320 ~~~~~~l~~~~  330 (347)
T 2gop_A          320 ATRLRELFTWD  330 (347)
T ss_dssp             SSSCCEEEEES
T ss_pred             CCChHHheEeC
Confidence            7765 788876

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.79  E-value=9.2e-17  Score=145.57  Aligned_cols=285  Identities=8%  Similarity=0.058  Sum_probs=182.3

Q ss_pred             CCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEec---------CCeE
Q 015490           67 RRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQ---------NSCR  137 (406)
Q Consensus        67 ~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~---------~~~~  137 (406)
                      ++.+.++++..+...   . ..-.++.+|.....    .+.++..+..+  .++|+|||++++++..         ..-.
T Consensus        13 ~~~~~~yv~~~~~~~---~-~d~~v~v~D~~t~~----~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~   82 (361)
T 2oiz_A           13 PQENRIYVMDSVFMH---L-TESRVHVYDYTNGK----FLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDV   82 (361)
T ss_dssp             CGGGEEEEEECCGGG---G-GGCEEEEEETTTCC----EEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEE
T ss_pred             CCCCEEEEECCCCCc---c-ccCeEEEEECCCCe----EEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCE
Confidence            345667766533210   0 01156677765533    44566666555  8999999999998752         1223


Q ss_pred             EEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeC--CCeEEEEeCCCcceEee-eeccCCceeE
Q 015490          138 LFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE--NGNLRVFKWPSLEIILN-ESEAHASVKD  214 (406)
Q Consensus       138 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--dg~i~vwd~~~~~~~~~-~~~~~~~i~~  214 (406)
                      |..|+..+.+....+...+.     ...+......++|+|||++|+++..  ++.|.+||+.+++.+.. +.. .. ...
T Consensus        83 v~v~d~~t~~~~~~i~~~~~-----~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~~-~~~  155 (361)
T 2oiz_A           83 VEVWDADKLTFEKEISLPPK-----RVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-AG-CWS  155 (361)
T ss_dssp             EEEEETTTCCEEEEEEECTT-----BCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-TT-EEE
T ss_pred             EEEEECcCCcEEEEEEcCcc-----ccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-CC-cce
Confidence            44556655554444333110     0111234567899999999998864  57999999999987766 432 22 233


Q ss_pred             EEEccCC-CEEEEEeCCCCEEEEEcCC-Ceeee------ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEe
Q 015490          215 LSFSPDG-KFLVSLGNRGPGRVWDLAS-SAVAT------PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWN  286 (406)
Q Consensus       215 ~~~s~~~-~~l~s~s~d~~i~iwd~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d  286 (406)
                      +.+.|++ ..+++.+.||.+.+|+... ++...      .+.... .. ..+.+++++..   + +..  ..++.+.++|
T Consensus       156 v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~-~~-~~~~~~~~g~~---~-~~~--~~~~~v~v~d  227 (361)
T 2oiz_A          156 VIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKD-DP-IFIAPALDKDK---A-HFV--SYYGNVYSAD  227 (361)
T ss_dssp             EEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTT-SC-BCSCCEECSSE---E-EEE--BTTSEEEEEE
T ss_pred             eEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCC-Cc-eEEEecccCCE---E-EEE--eCCCeEEEEE
Confidence            5677765 5778888999999999865 44431      111111 11 13344666653   2 122  3467899999


Q ss_pred             CCCceE--EEEeeec------C----CCeEEEEEcCCCCEEEEEeC-----------CCcEEEEECCCceEEEEeecccc
Q 015490          287 TTTWKR--IRTKQVV------R----EPVSSFNVSADGKLLAVGTA-----------SGDISIIDSSSLQVRTAVKKAHL  343 (406)
Q Consensus       287 ~~~~~~--~~~~~~~------~----~~i~~~~~sp~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~  343 (406)
                      +.....  ...+...      .    .....++|+|+++.++++..           .+.|.+||+.+++.+..+. .+.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~-~~~  306 (361)
T 2oiz_A          228 FSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIP-GRD  306 (361)
T ss_dssp             CSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEE-CTT
T ss_pred             ecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEe-cCC
Confidence            875432  2222110      0    11123789999988887653           3479999999999999986 454


Q ss_pred             cceEEEEEcCCCCeEEEEECCCcEEEEEecCC--cCCCC
Q 015490          344 GIVTALAFSYDSRALVSASMDSSVRVTVIEDK--KKSGG  380 (406)
Q Consensus       344 ~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~--~~~~~  380 (406)
                        +.+++|+|||++|++++. ++|.+||..++  +.++.
T Consensus       307 --p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~  342 (361)
T 2oiz_A          307 --ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRT  342 (361)
T ss_dssp             --CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEE
T ss_pred             --eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEE
Confidence              899999999999998876 99999999999  66544

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.79  E-value=8.4e-17  Score=147.66  Aligned_cols=289  Identities=10%  Similarity=0.038  Sum_probs=173.8

Q ss_pred             ccCCCCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCC-ceEEEEccCCCeEEEEecCCeEEEEE
Q 015490           63 SDDIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDL-PYRMAIHPHGDGIICALQNSCRLFEW  141 (406)
Q Consensus        63 ~~~~~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~sp~~~~l~~~~~~~~~i~~~  141 (406)
                      +..+++++.+++....+.       ...++.++.....     ...+..+... ...+.|+|||++|+.+.... .||.|
T Consensus        41 ~~~SpdG~~l~~~~~~~g-------~~~l~~~d~~~~~-----~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~-~l~~~  107 (396)
T 3c5m_A           41 KCFTQDGKKLLFAGDFDG-------NRNYYLLNLETQQ-----AVQLTEGKGDNTFGGFISTDERAFFYVKNEL-NLMKV  107 (396)
T ss_dssp             CCBCTTSCEEEEEECTTS-------SCEEEEEETTTTE-----EEECCCSSCBCTTTCEECTTSSEEEEEETTT-EEEEE
T ss_pred             CcCCCCCCEEEEEEecCC-------CceEEEEECCCCc-----EEEeecCCCCccccceECCCCCEEEEEEcCC-cEEEE
Confidence            344567777666543211       1256777765532     2333333333 33488999999998887433 57777


Q ss_pred             ecccccceeecceecc----ceeeecccccC----cEEEEEECCCCCEEEEe-----eCCCeEEEEeCCCcceEeeeecc
Q 015490          142 DEVENTEIRRLGVKIS----EKVLSQLENVG----QQLALTFDSEGTIFAAG-----SENGNLRVFKWPSLEIILNESEA  208 (406)
Q Consensus       142 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~----~v~~~~~s~~g~~l~~~-----~~dg~i~vwd~~~~~~~~~~~~~  208 (406)
                      +..+++..........    ...+.......    ....+.|+|+++.++.+     ..+..|++||+.+++.... ..+
T Consensus       108 d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~-~~~  186 (396)
T 3c5m_A          108 DLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVI-HQD  186 (396)
T ss_dssp             ETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEE-EEE
T ss_pred             ECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEee-ccC
Confidence            7665443222211100    00000000000    00014578888877665     3567899999988776543 345


Q ss_pred             CCceeEEEEcc-CCCEEEEEeCC------CCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCC--
Q 015490          209 HASVKDLSFSP-DGKFLVSLGNR------GPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRG--  279 (406)
Q Consensus       209 ~~~i~~~~~s~-~~~~l~s~s~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--  279 (406)
                      ...+..+.|+| +++.|+..+.+      ..|.+||+.+++............+..++|+|+++.   +++.......  
T Consensus       187 ~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~---l~~~~~~~~~~~  263 (396)
T 3c5m_A          187 TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSA---MAYVSYFKGQTD  263 (396)
T ss_dssp             SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSC---EEEEEEETTTCC
T ss_pred             CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCE---EEEEecCCCCcc
Confidence            55789999999 78877776643      368889987655433333112345778999999986   2222222222  


Q ss_pred             cEEEEEeCCCceEEEEeeecCCCeEEEEEcC-CCCEEEEEe----------------CCCcEEEEECCCceEEEEeeccc
Q 015490          280 ASIVTWNTTTWKRIRTKQVVREPVSSFNVSA-DGKLLAVGT----------------ASGDISIIDSSSLQVRTAVKKAH  342 (406)
Q Consensus       280 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~----------------~dg~i~i~d~~~~~~~~~~~~~~  342 (406)
                      +.|++||+.+++........  ... +.|+| ||+++++++                .+..|++||+.+++... +. .+
T Consensus       264 ~~l~~~d~~~g~~~~l~~~~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-l~-~~  338 (396)
T 3c5m_A          264 RVIYKANPETLENEEVMVMP--PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQK-LC-KH  338 (396)
T ss_dssp             EEEEEECTTTCCEEEEEECC--SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCE-EE-EC
T ss_pred             ceEEEEECCCCCeEEeeeCC--CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEE-cc-CC
Confidence            55999999887654332222  233 89999 999888764                24689999998876533 32 34


Q ss_pred             cc-----------ceEEEEEcCCCCeEEEEEC-CCcEEEEEec
Q 015490          343 LG-----------IVTALAFSYDSRALVSASM-DSSVRVTVIE  373 (406)
Q Consensus       343 ~~-----------~v~~~~~sp~~~~l~s~s~-dg~i~iw~~~  373 (406)
                      ..           .+..++|+|||+.|+.++. ++...+|.+.
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~  381 (396)
T 3c5m_A          339 STSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD  381 (396)
T ss_dssp             CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             CCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence            33           2567899999998887764 5665666554

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.77  E-value=6e-17  Score=160.31  Aligned_cols=247  Identities=9%  Similarity=-0.020  Sum_probs=168.9

Q ss_pred             CCCCceEEEEccCCCeEEEEe--cCC--eEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeC
Q 015490          112 DSDLPYRMAIHPHGDGIICAL--QNS--CRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE  187 (406)
Q Consensus       112 h~~~v~~~~~sp~~~~l~~~~--~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  187 (406)
                      |...+..++|||||++|+.+.  ++.  ..||.++..+++....           .+ ....+..++|+|||+.|+.++.
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-----------~~-~~~~~~~~~wspDg~~l~~~~~  190 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-----------VL-ERVKFSCMAWTHDGKGMFYNAY  190 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-----------EE-EEECSCCEEECTTSSEEEEEEC
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-----------cc-cCcccceEEEEeCCCEEEEEEE
Confidence            445688999999999999875  222  3777788765543221           01 1122567899999999999887


Q ss_pred             CCe----------------EEEEeCCCcceE--eeeec--cCCceeEEEEccCCCEEEEEeC-----CCCEEEEEcCC--
Q 015490          188 NGN----------------LRVFKWPSLEII--LNESE--AHASVKDLSFSPDGKFLVSLGN-----RGPGRVWDLAS--  240 (406)
Q Consensus       188 dg~----------------i~vwd~~~~~~~--~~~~~--~~~~i~~~~~s~~~~~l~s~s~-----d~~i~iwd~~~--  240 (406)
                      ++.                |++|++.+++..  ..+..  +...+..+.|+|||++|+..+.     +..|++||+.+  
T Consensus       191 ~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~  270 (710)
T 2xdw_A          191 PQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQES  270 (710)
T ss_dssp             CCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSS
T ss_pred             CCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccc
Confidence            765                999999877621  22222  2335789999999999888764     56899999976  


Q ss_pred             ----Ce-eeeecccCCcceEEEEEEEcCCCCceEEEEEEEc-CCCcEEEEEeCCCce--EEEEeeecCC--CeEEEEEcC
Q 015490          241 ----SA-VATPLAKENDELFASCRFSPLNNEDYVLYIAAIT-DRGASIVTWNTTTWK--RIRTKQVVRE--PVSSFNVSA  310 (406)
Q Consensus       241 ----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~i~~~d~~~~~--~~~~~~~~~~--~i~~~~~sp  310 (406)
                          +. ....+..+... .. ..|+++++.   +++.... .....|.+||+.++.  ....+..+..  .+..++|++
T Consensus       271 ~~~~~~~~~~~l~~~~~~-~~-~~~s~dg~~---l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~  345 (710)
T 2xdw_A          271 NGITGILKWVKLIDNFEG-EY-DYVTNEGTV---FTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVR  345 (710)
T ss_dssp             SSSCSSCCCEEEECSSSS-CE-EEEEEETTE---EEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEET
T ss_pred             cccCCccceEEeeCCCCc-EE-EEEeccCCE---EEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEc
Confidence                43 23444433333 22 358888885   3222221 225689999998764  2234444433  578899998


Q ss_pred             CCCEEEEEeCCCc--EEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEE-E---CCCcEEEEEecCCc
Q 015490          311 DGKLLAVGTASGD--ISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSA-S---MDSSVRVTVIEDKK  376 (406)
Q Consensus       311 ~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~-s---~dg~i~iw~~~~~~  376 (406)
                      ++.++++...++.  |++||+.+++.+..+. .+.+.+..+.++|++..++.. +   ..++|+.||+.+++
T Consensus       346 ~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          346 SNFLVLCYLHDVKNTLQLHDLATGALLKIFP-LEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             TTEEEEEEEETTEEEEEEEETTTCCEEEEEC-CCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CCEEEEEEEECCEEEEEEEECCCCCEEEecC-CCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            8888888888874  6677886777767775 567788899999998766533 2   34789999998876

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.77  E-value=1.8e-17  Score=149.41  Aligned_cols=238  Identities=13%  Similarity=0.043  Sum_probs=151.1

Q ss_pred             EEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccC--cEEEEEECCCCCEEE-EeeCCCeEEE
Q 015490          118 RMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVG--QQLALTFDSEGTIFA-AGSENGNLRV  193 (406)
Q Consensus       118 ~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~g~~l~-~~~~dg~i~v  193 (406)
                      .+++++++..+++++ ++  .|+.|+..+++....+            ....  .+..++|+|+|++++ ++..++.|.+
T Consensus         4 g~~~~~~~~~~v~~~~~~--~v~~~d~~~~~~~~~~------------~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~   69 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPN--NLHVVDVASDTVYKSC------------VMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYG   69 (349)
T ss_dssp             CCCCCTTCEEEEEEETTT--EEEEEETTTTEEEEEE------------ECSSCCSSCEEEECTTSSEEEEEETTTTEEEE
T ss_pred             cccccCCCEEEEEeCCCC--eEEEEECCCCcEEEEE------------ecCCCCCCceeEECCCCCEEEEEeCCCCcEEE
Confidence            456777777777765 55  4555665544433322            2222  567899999998654 5557899999


Q ss_pred             EeCCCcceEeeeeccC------CceeEEEEccCCCEEEEEeCC------------CCEEEEEcCCCeeeeeccc-CCcce
Q 015490          194 FKWPSLEIILNESEAH------ASVKDLSFSPDGKFLVSLGNR------------GPGRVWDLASSAVATPLAK-ENDEL  254 (406)
Q Consensus       194 wd~~~~~~~~~~~~~~------~~i~~~~~s~~~~~l~s~s~d------------~~i~iwd~~~~~~~~~~~~-~~~~~  254 (406)
                      ||+.+++....+....      ..+.+++|+|||+++++++.+            +.|.+||+.+++....+.. .....
T Consensus        70 ~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~  149 (349)
T 1jmx_B           70 IDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQ  149 (349)
T ss_dssp             EETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSS
T ss_pred             EeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCc
Confidence            9999988776655332      237899999999999998865            8999999988543322211 11224


Q ss_pred             EEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCC------------------------CeEEEEEcC
Q 015490          255 FASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVRE------------------------PVSSFNVSA  310 (406)
Q Consensus       255 ~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~------------------------~i~~~~~sp  310 (406)
                      +.+++|+|+++    +++  .   ++.|++||..+++....+..+..                        ....+++++
T Consensus       150 ~~~~~~s~dg~----l~~--~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (349)
T 1jmx_B          150 VYLMRAADDGS----LYV--A---GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFK  220 (349)
T ss_dssp             CCCEEECTTSC----EEE--E---SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-
T ss_pred             ccceeECCCCc----EEE--c---cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecC
Confidence            66888999987    222  2   23399999999888776654320                        234566666


Q ss_pred             CCCEEEEEeCC-CcEEEEECCCceEEEEeecccccceEEEEEcC-CCCeEEEEECCCcEEEEEecCCcCCCC
Q 015490          311 DGKLLAVGTAS-GDISIIDSSSLQVRTAVKKAHLGIVTALAFSY-DSRALVSASMDSSVRVTVIEDKKKSGG  380 (406)
Q Consensus       311 ~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~s~dg~i~iw~~~~~~~~~~  380 (406)
                      ++......... ..+..+|..+++....-...+...+.+++|+| ++++++++  ++.|.+||+.+++.+..
T Consensus       221 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~  290 (349)
T 1jmx_B          221 DDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKA  290 (349)
T ss_dssp             ------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEE
T ss_pred             CCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEE
Confidence            54221111111 11223555554432221123556788999999 99999887  88999999998876443

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.77  E-value=2.3e-17  Score=162.07  Aligned_cols=246  Identities=12%  Similarity=0.032  Sum_probs=164.3

Q ss_pred             eEEecCCCCceEEEEccCCCeEEEE--e-cCCeEEEEEecccccceeecceeccceeeecccccCcEE---------EEE
Q 015490          107 AELRTDSDLPYRMAIHPHGDGIICA--L-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQL---------ALT  174 (406)
Q Consensus       107 ~~~~~h~~~v~~~~~sp~~~~l~~~--~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---------~~~  174 (406)
                      ..+.+|...+..++|++++-+++..  . ++...||.+..  +.....+..           +...+.         ...
T Consensus        17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~l~~-----------~~~~~~~~~~~~~~~~~~   83 (662)
T 3azo_A           17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRA--DGAEESALP-----------APWNVRNRVFEYSGFPWA   83 (662)
T ss_dssp             HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECT--TSCEEESSC-----------TTCCBCCCGGGTCCCCEE
T ss_pred             HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECC--CCCcceeCC-----------CCccccccccccCCccce
Confidence            4567899999999999876555555  2 55678888732  222222221           111222         344


Q ss_pred             EC--CCCCE-EEEeeC-CCeEEEEeCC--C-cceEeeeec-----cCCceeEEEEccCCCEEEEEeCC----------CC
Q 015490          175 FD--SEGTI-FAAGSE-NGNLRVFKWP--S-LEIILNESE-----AHASVKDLSFSPDGKFLVSLGNR----------GP  232 (406)
Q Consensus       175 ~s--~~g~~-l~~~~~-dg~i~vwd~~--~-~~~~~~~~~-----~~~~i~~~~~s~~~~~l~s~s~d----------~~  232 (406)
                      |+  |||+. |+.++. +..|+++++.  . ++ ...+..     +...+.+++|+|||+.|++++.+          ..
T Consensus        84 ~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~  162 (662)
T 3azo_A           84 GVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRF  162 (662)
T ss_dssp             EECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEE
T ss_pred             eeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeE
Confidence            54  99988 776554 5677777765  2 43 334444     34478899999999999998876          57


Q ss_pred             EEEEEcCC------Ceeeeecc-cCCcceEEEEEEEcCCCCceEEEEEEEcC-----CCcEEEEEeCC-Cc---eEEEEe
Q 015490          233 GRVWDLAS------SAVATPLA-KENDELFASCRFSPLNNEDYVLYIAAITD-----RGASIVTWNTT-TW---KRIRTK  296 (406)
Q Consensus       233 i~iwd~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~i~~~d~~-~~---~~~~~~  296 (406)
                      |++||+.+      ++.. .+. .+ ...+..++|+|+++.   +++.....     ....|++||+. ++   +.....
T Consensus       163 i~~~~~~~~~~~~~~~~~-~l~~~~-~~~~~~~~~SpDG~~---la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~  237 (662)
T 3azo_A          163 LAAVPLDGSAAADRSAVR-ELSDDA-HRFVTGPRLSPDGRQ---AVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL  237 (662)
T ss_dssp             EEEEETTSTTTTCGGGSE-ESSCSC-SSEECCCEECTTSSE---EEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE
T ss_pred             EEEEECCCCccccCCcee-EEEecC-CCcccCceECCCCCE---EEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC
Confidence            99999987      5443 333 32 345677899999985   22222111     23689999998 56   443334


Q ss_pred             eecCCCeEEEEEcCCCCEEEEEeCCC--cEEEEECCCceEEEEeecccccc--------eEEEEEcCCCCeEEEEECCCc
Q 015490          297 QVVREPVSSFNVSADGKLLAVGTASG--DISIIDSSSLQVRTAVKKAHLGI--------VTALAFSYDSRALVSASMDSS  366 (406)
Q Consensus       297 ~~~~~~i~~~~~sp~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~--------v~~~~~sp~~~~l~s~s~dg~  366 (406)
                      ..+...+..+.|+|||++++++..++  .|++||+.+++...... .+...        +..++|+|+++++++++. +.
T Consensus       238 ~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~-~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~  315 (662)
T 3azo_A          238 GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCR-REEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA  315 (662)
T ss_dssp             EETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSC-CSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS
T ss_pred             CCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccc-ccccccCccccccCceEeEeCCCEEEEEEEc-Cc
Confidence            44467899999999999887877788  67777776666544432 33222        567899999999999988 99


Q ss_pred             EEEEEec
Q 015490          367 VRVTVIE  373 (406)
Q Consensus       367 i~iw~~~  373 (406)
                      ++||.+.
T Consensus       316 ~~l~~~d  322 (662)
T 3azo_A          316 AVLGILD  322 (662)
T ss_dssp             CEEEEEE
T ss_pred             cEEEEEE
Confidence            9999554

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.74  E-value=3.8e-15  Score=131.23  Aligned_cols=243  Identities=12%  Similarity=0.076  Sum_probs=162.6

Q ss_pred             ceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEE
Q 015490          105 PVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAA  184 (406)
Q Consensus       105 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  184 (406)
                      .+..+..+.....+++|+|+++.++..+.....|+.|+..++  ...+.           .....+.+++++++|+++++
T Consensus        19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~-----------~~~~~~~~l~~~~dg~l~v~   85 (296)
T 3e5z_A           19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEM-----------HPSHHQNGHCLNKQGHLIAC   85 (296)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEE-----------SSCSSEEEEEECTTCCEEEE
T ss_pred             cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEE-----------CCCCCcceeeECCCCcEEEE
Confidence            345555666778899999999944444322236666776533  22111           13356889999999998887


Q ss_pred             eeCCCeEEEEeCCCcceEeeeeccC----CceeEEEEccCCCEEEEEeC-----------------CCCEEEEEcCCCee
Q 015490          185 GSENGNLRVFKWPSLEIILNESEAH----ASVKDLSFSPDGKFLVSLGN-----------------RGPGRVWDLASSAV  243 (406)
Q Consensus       185 ~~~dg~i~vwd~~~~~~~~~~~~~~----~~i~~~~~s~~~~~l~s~s~-----------------d~~i~iwd~~~~~~  243 (406)
                      ...++.|.+||..+++.........    ..+.+++++|+|+++++.+.                 .+.|..++.. ++.
T Consensus        86 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~  164 (296)
T 3e5z_A           86 SHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL  164 (296)
T ss_dssp             ETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE
T ss_pred             ecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE
Confidence            7777899999997877543322211    25678999999998887321                 2345555554 433


Q ss_pred             eeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC-CceE---EEEeeecCCCeEEEEEcCCCCEEEEEe
Q 015490          244 ATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT-TWKR---IRTKQVVREPVSSFNVSADGKLLAVGT  319 (406)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~-~~~~---~~~~~~~~~~i~~~~~sp~~~~l~~~~  319 (406)
                      . .+.. .......++|+|+++.     + ++...++.|++||+. +++.   ...+..+...+..++++++|+++++. 
T Consensus       165 ~-~~~~-~~~~~~gi~~s~dg~~-----l-v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-  235 (296)
T 3e5z_A          165 S-APIR-DRVKPNGLAFLPSGNL-----L-VSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-  235 (296)
T ss_dssp             E-EEEC-CCSSEEEEEECTTSCE-----E-EEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-
T ss_pred             E-Eeec-CCCCCccEEECCCCCE-----E-EEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-
Confidence            2 2222 2334678999999984     3 556678899999986 4443   22332234556789999999866665 


Q ss_pred             CCCcEEEEECCCceEEEEeecccccceEEEEE-cCCCCeEEEEECCCcEEEEEecCC
Q 015490          320 ASGDISIIDSSSLQVRTAVKKAHLGIVTALAF-SYDSRALVSASMDSSVRVTVIEDK  375 (406)
Q Consensus       320 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~-sp~~~~l~s~s~dg~i~iw~~~~~  375 (406)
                       ++.|.+||.. ++.+..+. .+.. +.+++| +|+++.|++++.++ +.-++.++.
T Consensus       236 -~~~v~~~~~~-g~~~~~~~-~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~  287 (296)
T 3e5z_A          236 -GDGVHVLTPD-GDELGRVL-TPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVR  287 (296)
T ss_dssp             -TTEEEEECTT-SCEEEEEE-CSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCC
T ss_pred             -CCeEEEECCC-CCEEEEEE-CCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccc
Confidence             7889999986 77777765 5555 899999 68999888888763 444455444

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.73  E-value=7.7e-14  Score=126.53  Aligned_cols=285  Identities=8%  Similarity=-0.055  Sum_probs=180.9

Q ss_pred             CCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEec---------CCeE
Q 015490           67 RRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQ---------NSCR  137 (406)
Q Consensus        67 ~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~---------~~~~  137 (406)
                      ++.+.++++.+.+..     +...+..+|.....    .+.++.....+  .++++|||++++++..         .+-.
T Consensus        30 ~~~~~~yv~~~~~~~-----~~~~v~v~D~~t~~----~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~   98 (373)
T 2mad_H           30 ADGRRSYINLPAHHS-----AIIQQWVLDAGSGS----ILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDY   98 (373)
T ss_pred             CCCCEEEEeCCcccC-----CccEEEEEECCCCe----EEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCe
Confidence            455777776541211     11166777776533    34555544333  9999999999998751         1223


Q ss_pred             EEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeC--CCeEEEEeCCCcceEee-eeccCCceeE
Q 015490          138 LFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE--NGNLRVFKWPSLEIILN-ESEAHASVKD  214 (406)
Q Consensus       138 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--dg~i~vwd~~~~~~~~~-~~~~~~~i~~  214 (406)
                      |..+|..+.+....+.+.. ..   ..........+.|+|||++|+++..  ++.|.++| .+++.+.. +... .   +
T Consensus        99 v~viD~~t~~~~~~i~~~~-~~---~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~  169 (373)
T 2mad_H           99 VEVFDPVTFLPIADIELPD-AP---RFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---C  169 (373)
T ss_pred             EEEEECCCCcEEEEEECCC-cc---ccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---e
Confidence            4455655544444332210 00   0001123457899999999998874  47899999 99988766 4322 2   2


Q ss_pred             EEEccCC-CEEEEEeCCCCEEEEEcCCCeeeeecc-----cCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC
Q 015490          215 LSFSPDG-KFLVSLGNRGPGRVWDLASSAVATPLA-----KENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT  288 (406)
Q Consensus       215 ~~~s~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~  288 (406)
                      +.+.|++ +.+++.+.||.+.++|. +++......     ...........+.+++..   +++.   ...+.+.+.|+.
T Consensus       170 ~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~---~~~~---~~~~~v~vid~~  242 (373)
T 2mad_H          170 YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR---IVWP---VYSGKILQADIS  242 (373)
T ss_pred             EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCE---EEEE---cCCceEEEEecc
Confidence            4455655 35566778999999999 777663321     111222234566777654   2222   246789999987


Q ss_pred             Cce--EEEEeeec----------CCCeEEEEEcCCCCEEEEEeC----------CCcEEEEECCCceEEEEeecccccce
Q 015490          289 TWK--RIRTKQVV----------REPVSSFNVSADGKLLAVGTA----------SGDISIIDSSSLQVRTAVKKAHLGIV  346 (406)
Q Consensus       289 ~~~--~~~~~~~~----------~~~i~~~~~sp~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~v  346 (406)
                      +..  .+..+...          ......+.++|+++.++++..          .+.|.++|+.+++.+..+.  .....
T Consensus       243 ~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~--~g~~p  320 (373)
T 2mad_H          243 AAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS--LGHDV  320 (373)
T ss_pred             CCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE--CCCCc
Confidence            542  22222211          122445789999998888654          3579999999999999886  33468


Q ss_pred             EEEEEcCCCC-eEEEEE-CCCcEEEEEecCCcCCCC
Q 015490          347 TALAFSYDSR-ALVSAS-MDSSVRVTVIEDKKKSGG  380 (406)
Q Consensus       347 ~~~~~sp~~~-~l~s~s-~dg~i~iw~~~~~~~~~~  380 (406)
                      .++.|+|||+ .++++. .++.|.++|+.+++.+..
T Consensus       321 ~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          321 DAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             CeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence            8999999999 777776 589999999999987665

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.73  E-value=4.2e-15  Score=128.91  Aligned_cols=244  Identities=11%  Similarity=0.042  Sum_probs=164.2

Q ss_pred             CceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEE
Q 015490          115 LPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVF  194 (406)
Q Consensus       115 ~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vw  194 (406)
                      .+.+++++++|+.++++......|+.++..+.... .          ....+...+.+++++++|+++++.. ++.|.+|
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~-~----------~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~   92 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT-V----------LPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTL   92 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----E-E----------CCCCSCCSCCCEEECTTCCEEEEET-TTEEEEE
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccc-e----------EeeCCcCCcceeEECCCCCEEEEcC-CCEEEEE
Confidence            66899999999855524323335555654322111 0          0111224567899999999666655 8899999


Q ss_pred             eCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEE
Q 015490          195 KWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAA  274 (406)
Q Consensus       195 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  274 (406)
                      |................+.+++++++|+.+++...++.|.+|+..+......... .......++++++++      +.+
T Consensus        93 d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~-~~~~p~~i~~~~~g~------l~v  165 (270)
T 1rwi_B           93 AAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT-GLNDPDGVAVDNSGN------VYV  165 (270)
T ss_dssp             CTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCC-SCCSCCCEEECTTCC------EEE
T ss_pred             eCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccc-cCCCceeEEEeCCCC------EEE
Confidence            9876544322222224689999999999777777788999998665443322211 122356789999886      223


Q ss_pred             EcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCC
Q 015490          275 ITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYD  354 (406)
Q Consensus       275 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~  354 (406)
                      +...++.|.+||............+...+.+++++++|+++++...++.|.+||.......... ..+...+.+++++++
T Consensus       166 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~-~~~~~~p~~i~~~~~  244 (270)
T 1rwi_B          166 TDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLP-FTGLNTPLAVAVDSD  244 (270)
T ss_dssp             EEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECC-CCSCSCEEEEEECTT
T ss_pred             EECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeec-cCCCCCceeEEECCC
Confidence            3345689999999876654433333356889999999977777767889999998765443322 133356899999999


Q ss_pred             CCeEEEEECCCcEEEEEecCCcCC
Q 015490          355 SRALVSASMDSSVRVTVIEDKKKS  378 (406)
Q Consensus       355 ~~~l~s~s~dg~i~iw~~~~~~~~  378 (406)
                      |+++++...+++|+++++...+..
T Consensus       245 g~l~v~~~~~~~v~~~~~~~~~~~  268 (270)
T 1rwi_B          245 RTVYVADRGNDRVVKLTSLEHHHH  268 (270)
T ss_dssp             CCEEEEEGGGTEEEEECCCGGGSC
T ss_pred             CCEEEEECCCCEEEEEcCCCcccc
Confidence            998888889999999999887664

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.72  E-value=1.6e-15  Score=136.65  Aligned_cols=223  Identities=14%  Similarity=0.090  Sum_probs=151.4

Q ss_pred             CCceEEEEccCCCeEEEEe--------cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEe
Q 015490          114 DLPYRMAIHPHGDGIICAL--------QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAG  185 (406)
Q Consensus       114 ~~v~~~~~sp~~~~l~~~~--------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  185 (406)
                      ..+...++  ||++++...        .....||.++..+++..             .+   ..+..++|||||++|+..
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-------------~l---~~~~~~~~SpDg~~la~~   76 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-------------FI---ENATMPRISPDGKKIAFM   76 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-------------EE---ESCEEEEECTTSSEEEEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-------------Ec---ccCCCeEECCCCCEEEEE
Confidence            34566777  888887653        12457888887644311             11   457789999999999887


Q ss_pred             eCC---C--eEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCC---------------------------CCE
Q 015490          186 SEN---G--NLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNR---------------------------GPG  233 (406)
Q Consensus       186 ~~d---g--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d---------------------------~~i  233 (406)
                      +.+   +  .|.+|++.+++...... ... +..++|+|||+.|+.++.+                           ..|
T Consensus        77 ~~~~~~~~~~l~~~~~~~g~~~~l~~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l  154 (347)
T 2gop_A           77 RANEEKKVSEIWVADLETLSSKKILE-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTF  154 (347)
T ss_dssp             EEETTTTEEEEEEEETTTTEEEEEEE-ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEE
T ss_pred             EeccCCCcceEEEEECCCCceEEEEc-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceE
Confidence            654   3  48888888776554333 334 8999999999999888642                           568


Q ss_pred             EEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCC-------CcEEEEEeCCCceEEEEeeecCCCeEEE
Q 015490          234 RVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDR-------GASIVTWNTTTWKRIRTKQVVREPVSSF  306 (406)
Q Consensus       234 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~i~~~d~~~~~~~~~~~~~~~~i~~~  306 (406)
                      ++||+.+++....+..  . .+..+.|+|++ .   ++ ++....       ...|+++|  +++. ..+..+ ..+..+
T Consensus       155 ~~~d~~~~~~~~~l~~--~-~~~~~~~spdg-~---~~-~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~-~~~~~~  222 (347)
T 2gop_A          155 WIFDTESEEVIEEFEK--P-RFSSGIWHRDK-I---VV-NVPHREIIPQYFKFWDIYIWE--DGKE-EKMFEK-VSFYAV  222 (347)
T ss_dssp             EEEETTTTEEEEEEEE--E-TTCEEEEETTE-E---EE-EEECCCSSCCSSCCEEEEEEE--TTEE-EEEEEE-ESEEEE
T ss_pred             EEEECCCCeEEeeecC--C-CcccccCCCCe-E---EE-EEecccccccccccccEEEeC--CCce-EEeccC-cceeeE
Confidence            9999988876444443  2 46688999987 3   22 222221       34677777  5443 334334 445544


Q ss_pred             EEcCCCCEEEEEeCC--------CcEEEEECCCceEEEEeecccccceEE-EEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490          307 NVSADGKLLAVGTAS--------GDISIIDSSSLQVRTAVKKAHLGIVTA-LAFSYDSRALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       307 ~~sp~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~v~~-~~~sp~~~~l~s~s~dg~i~iw~~~~~~  376 (406)
                        +|||++|+.++.+        ..|.+||  +++..... ..|...+.. +.|+ |+ ++++++.++.+++| +.+++
T Consensus       223 --spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~-~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~  293 (347)
T 2gop_A          223 --DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGIL-DEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGE  293 (347)
T ss_dssp             --EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESS-TTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSS
T ss_pred             --CCCCCEEEEEEccccCCccccceEEEEC--CCceEecc-ccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCc
Confidence              9999998887754        3688888  55544333 356777886 9999 88 88899999999999 87543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.71  E-value=8.3e-15  Score=130.96  Aligned_cols=267  Identities=13%  Similarity=0.047  Sum_probs=174.0

Q ss_pred             EEEEEecCCCCccccceeEEe--cCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeeccccc
Q 015490           90 LLSHFDFASNSLSDQPVAELR--TDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV  167 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (406)
                      .+..+|.++..+.........  .....+..+.+.  +..+.++......|..+|..+++....            +...
T Consensus        18 ~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~------------i~~~   83 (328)
T 3dsm_A           18 TLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGR------------ITGF   83 (328)
T ss_dssp             EEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEE------------EECC
T ss_pred             eEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEE------------cCCC
Confidence            566677766443221110001  112345677774  445555543233555567665444333            2334


Q ss_pred             CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccC-----CceeEEEEccCCCEEEEEe--CCCCEEEEEcCC
Q 015490          168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAH-----ASVKDLSFSPDGKFLVSLG--NRGPGRVWDLAS  240 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~s~s--~d~~i~iwd~~~  240 (406)
                      .....++++++++++++...++.|.+||..+++....+....     .....+++  ++..++++.  .++.|.++|..+
T Consensus        84 ~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t  161 (328)
T 3dsm_A           84 TSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTET  161 (328)
T ss_dssp             SSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTT
T ss_pred             CCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCC
Confidence            567889999998655554478999999999988776655433     14567777  344555554  488999999999


Q ss_pred             CeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCC--------CcEEEEEeCCCceEEEEeeec-CCCeEEEEEcCC
Q 015490          241 SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDR--------GASIVTWNTTTWKRIRTKQVV-REPVSSFNVSAD  311 (406)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~i~~~d~~~~~~~~~~~~~-~~~i~~~~~sp~  311 (406)
                      ++....+....  ....+.++|+++    +++...+..        .+.|.++|..+++....+... ......++++|+
T Consensus       162 ~~~~~~i~~g~--~p~~i~~~~dG~----l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d  235 (328)
T 3dsm_A          162 DKVVDELTIGI--QPTSLVMDKYNK----MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGT  235 (328)
T ss_dssp             TEEEEEEECSS--CBCCCEECTTSE----EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTT
T ss_pred             CeEEEEEEcCC--CccceEEcCCCC----EEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecC
Confidence            98887765432  245788899886    232222110        278999999999887776643 236789999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCceEEEE-eecccccceEEEEEcC-CCCeEEEE----ECCCcEEEEEecCCcCCCCc
Q 015490          312 GKLLAVGTASGDISIIDSSSLQVRTA-VKKAHLGIVTALAFSY-DSRALVSA----SMDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       312 ~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~sp-~~~~l~s~----s~dg~i~iw~~~~~~~~~~~  381 (406)
                      +++|+++..  .|.+||..+++.... +...+......++++| +++.+++.    ..++.|.+||.. ++.+..+
T Consensus       236 ~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i  308 (328)
T 3dsm_A          236 RDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF  308 (328)
T ss_dssp             SCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred             CCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence            999988765  899999988775421 1111245688999999 55555665    568899999997 7765554

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.71  E-value=1.5e-15  Score=149.80  Aligned_cols=247  Identities=12%  Similarity=0.026  Sum_probs=160.5

Q ss_pred             cCCCCceEEEEccCCCeEEEEe--cC--CeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEee
Q 015490          111 TDSDLPYRMAIHPHGDGIICAL--QN--SCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGS  186 (406)
Q Consensus       111 ~h~~~v~~~~~sp~~~~l~~~~--~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  186 (406)
                      +|...+.+++|||||++|+.+.  ++  ...|+.|+..+++....          ..+.. .....++|+|||+.|+.++
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~----------~~~~~-~~~~~~~wspDg~~l~~~~  186 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV----------DVIEG-GKYATPKWTPDSKGFYYEW  186 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS----------CCBSC-CTTCCCEECTTSSEEEEEE
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC----------cccCc-ccccceEEecCCCEEEEEE
Confidence            4566789999999999998764  22  25677777765543200          00111 1125789999999999998


Q ss_pred             CCCe-------------EEEEeCCCcc----eEeeeeccCCceeEEEEccCCCEEEEEeCCC----CEEEEEcCCCeeee
Q 015490          187 ENGN-------------LRVFKWPSLE----IILNESEAHASVKDLSFSPDGKFLVSLGNRG----PGRVWDLASSAVAT  245 (406)
Q Consensus       187 ~dg~-------------i~vwd~~~~~----~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~----~i~iwd~~~~~~~~  245 (406)
                      .|..             |++|++.++.    .+.....+...+..+.|+|||++|+..+.++    .|++|+..+++. .
T Consensus       187 ~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~  265 (695)
T 2bkl_A          187 LPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-R  265 (695)
T ss_dssp             CCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-E
T ss_pred             ecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-E
Confidence            8766             9999998776    2222223334788999999999988887665    677776655543 3


Q ss_pred             ecccCCcceEEEEEEEcCCCCceEEEEEEE-cCCCcEEEEEeCCCceE--EEEeeec--CCCeEEEEEcCCCCEEEEEeC
Q 015490          246 PLAKENDELFASCRFSPLNNEDYVLYIAAI-TDRGASIVTWNTTTWKR--IRTKQVV--REPVSSFNVSADGKLLAVGTA  320 (406)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~d~~~~~~--~~~~~~~--~~~i~~~~~sp~~~~l~~~~~  320 (406)
                      .+..+... .....+ +++.    +++... ...++.|.+||+.++..  ...+..+  ...+..++|+ ++.++++...
T Consensus       266 ~l~~~~~~-~~~~~~-~~g~----l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~  338 (695)
T 2bkl_A          266 LLVKGVGA-KYEVHA-WKDR----FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLK  338 (695)
T ss_dssp             EEEECSSC-CEEEEE-ETTE----EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEE
T ss_pred             EeecCCCc-eEEEEe-cCCc----EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEE
Confidence            33333332 334445 5543    222222 12468999999987652  2233333  3457888888 6778888888


Q ss_pred             CCcEEEEECC-CceEEEEeecccccceEEEEEcCCCCeEEEEE----CCCcEEEEEecCCc
Q 015490          321 SGDISIIDSS-SLQVRTAVKKAHLGIVTALAFSYDSRALVSAS----MDSSVRVTVIEDKK  376 (406)
Q Consensus       321 dg~i~i~d~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s----~dg~i~iw~~~~~~  376 (406)
                      |+..+||.+. +++....+...+.+.+..+.++|++..++...    ..++|++||+.+++
T Consensus       339 dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          339 DATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             TTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             CCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            9887777554 35555555422366788889999987766332    34789999998765

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.70  E-value=8.6e-14  Score=124.59  Aligned_cols=249  Identities=11%  Similarity=0.070  Sum_probs=162.1

Q ss_pred             ceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEE
Q 015490          105 PVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAA  184 (406)
Q Consensus       105 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  184 (406)
                      ....+..+...+.+++|+|+|+.++++..+ ..|+.|+..+++.....           ......+.+++++++|+++++
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~-~~i~~~d~~~~~~~~~~-----------~~~~~~~~~i~~~~dg~l~v~  103 (333)
T 2dg1_A           36 PWLEISKKGLQLEGLNFDRQGQLFLLDVFE-GNIFKINPETKEIKRPF-----------VSHKANPAAIKIHKDGRLFVC  103 (333)
T ss_dssp             EEEEEESSCCCEEEEEECTTSCEEEEETTT-CEEEEECTTTCCEEEEE-----------ECSSSSEEEEEECTTSCEEEE
T ss_pred             eeEEEeccCccccCcEECCCCCEEEEECCC-CEEEEEeCCCCcEEEEe-----------eCCCCCcceEEECCCCcEEEE
Confidence            455666777788999999999965555422 36666776543321110           023467899999999998887


Q ss_pred             eeCC----CeEEEEeCCCcceEeeee--ccCCceeEEEEccCCCEEEEEeC------CCCEEEEEcCCCeeeeecccCCc
Q 015490          185 GSEN----GNLRVFKWPSLEIILNES--EAHASVKDLSFSPDGKFLVSLGN------RGPGRVWDLASSAVATPLAKEND  252 (406)
Q Consensus       185 ~~~d----g~i~vwd~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~s~s~------d~~i~iwd~~~~~~~~~~~~~~~  252 (406)
                      ...+    +.|.+||.+++.....+.  .....+.+++++|+|+.+++...      .+.|..+|..+++......  ..
T Consensus       104 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~  181 (333)
T 2dg1_A          104 YLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ--NI  181 (333)
T ss_dssp             ECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE--EE
T ss_pred             eCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec--CC
Confidence            7666    689999988776542222  22347899999999987776653      2456666665544332221  12


Q ss_pred             ceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC-ceEEEE-----eee-c-CCCeEEEEEcCCCCEEEEEeCCCcE
Q 015490          253 ELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT-WKRIRT-----KQV-V-REPVSSFNVSADGKLLAVGTASGDI  324 (406)
Q Consensus       253 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~-~~~~~~-----~~~-~-~~~i~~~~~sp~~~~l~~~~~dg~i  324 (406)
                      .....++|+|+++.     +.++...++.|++||..+ +.....     ... . ...+..++++++|+++++...++.|
T Consensus       182 ~~~~~i~~~~dg~~-----l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v  256 (333)
T 2dg1_A          182 SVANGIALSTDEKV-----LWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRV  256 (333)
T ss_dssp             SSEEEEEECTTSSE-----EEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEE
T ss_pred             CcccceEECCCCCE-----EEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEE
Confidence            23678999999874     233344578999999863 322211     111 1 1357889999999988877778899


Q ss_pred             EEEECCCceEEEEeeccccc------ceEEEEEcCCCCeEEEEECCC----cEEEEEecC
Q 015490          325 SIIDSSSLQVRTAVKKAHLG------IVTALAFSYDSRALVSASMDS----SVRVTVIED  374 (406)
Q Consensus       325 ~i~d~~~~~~~~~~~~~~~~------~v~~~~~sp~~~~l~s~s~dg----~i~iw~~~~  374 (406)
                      .+||. +++.+..+. .+..      .+.+++|+||++.|+.++.++    .-.+|.++.
T Consensus       257 ~~~d~-~g~~~~~~~-~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~  314 (333)
T 2dg1_A          257 LVFNK-RGYPIGQIL-IPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG  314 (333)
T ss_dssp             EEECT-TSCEEEEEE-CTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred             EEECC-CCCEEEEEE-cCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEec
Confidence            99998 466666654 2322      688999999987776555543    345555543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.70  E-value=4.4e-14  Score=127.95  Aligned_cols=269  Identities=10%  Similarity=0.033  Sum_probs=171.4

Q ss_pred             ccCCCCCcEEEEEcCCCCC-CCCcCccEEEEEEecCCCCccccceeEEec------CCCCceEEEEccCCCeEEEEe-cC
Q 015490           63 SDDIRRNYYVVLAGGGGAG-NSGIRNAVLLSHFDFASNSLSDQPVAELRT------DSDLPYRMAIHPHGDGIICAL-QN  134 (406)
Q Consensus        63 ~~~~~~~~~~~~~~ggg~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------h~~~v~~~~~sp~~~~l~~~~-~~  134 (406)
                      ...++++++++++...... ..|. ..-.+..||....    +.+.++..      +...+..++++|||++|+++. +.
T Consensus        55 i~~spdg~~lyv~~~~~~~~~~g~-~~~~v~v~d~~t~----~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~  129 (361)
T 2oiz_A           55 VQVSNDGKKIYTMTTYHERITRGK-RSDVVEVWDADKL----TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASP  129 (361)
T ss_dssp             EEECTTSSEEEEEEEEETTSSSSC-EEEEEEEEETTTC----CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESS
T ss_pred             eEECCCCCEEEEEEecccccccCC-CCCEEEEEECcCC----cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCC
Confidence            3455677777776421000 0010 1124556666542    34444443      235678999999999999886 32


Q ss_pred             CeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCC-CEEEEeeCCCeEEEEeCCC-cceEee------ee
Q 015490          135 SCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEG-TIFAAGSENGNLRVFKWPS-LEIILN------ES  206 (406)
Q Consensus       135 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~vwd~~~-~~~~~~------~~  206 (406)
                      .-.|..|+..+.+....+           +... ....+.+.|++ ..+++.+.||.+.+|++.. ++....      +.
T Consensus       130 ~~~v~v~d~~~~~~~~~~-----------i~~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~  197 (361)
T 2oiz_A          130 ATSIGIVDVAKGDYVEDV-----------TAAA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFS  197 (361)
T ss_dssp             SEEEEEEETTTTEEEEEE-----------GGGT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSC
T ss_pred             CCeEEEEECCCCcEEEEE-----------ecCC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEc
Confidence            334555666544333220           2222 22235677766 6777888899999999865 444311      11


Q ss_pred             ccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeee--eecccC------Cc---ceEEEEEEEcCCCCceEEEEEEE
Q 015490          207 EAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVA--TPLAKE------ND---ELFASCRFSPLNNEDYVLYIAAI  275 (406)
Q Consensus       207 ~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~--~~~~~~------~~---~~~~~~~~~~~~~~~~~l~~~~~  275 (406)
                      ....+ ..+.+++++..++..+.++.+.++|+......  ..+...      ..   .....++|+|+++.   +|++..
T Consensus       198 ~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~---lyv~~~  273 (361)
T 2oiz_A          198 VKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGR---MYVFMH  273 (361)
T ss_dssp             TTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTE---EEEEEE
T ss_pred             CCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCe---EEEEEc
Confidence            11112 23445778888888888999999998754321  111100      00   00112789999875   444333


Q ss_pred             -cC-------CCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCc--eEEEEeecccccc
Q 015490          276 -TD-------RGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSL--QVRTAVKKAHLGI  345 (406)
Q Consensus       276 -~~-------~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~  345 (406)
                       .+       ....|.+||+.+++.+.++..+.  +.+++|+|||++|++++. +.|.+||+.++  +.+..+. .+...
T Consensus       274 ~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~-~~G~~  349 (361)
T 2oiz_A          274 PDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIE-GAAEA  349 (361)
T ss_dssp             SSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEET-TSCSS
T ss_pred             cCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEec-cCCCC
Confidence             11       24589999999999999998876  899999999999998887 99999999999  9888874 46677


Q ss_pred             eEEEEEcCCCC
Q 015490          346 VTALAFSYDSR  356 (406)
Q Consensus       346 v~~~~~sp~~~  356 (406)
                      ...++++|+|+
T Consensus       350 P~~~~~~p~G~  360 (361)
T 2oiz_A          350 SLQVQFHPVGG  360 (361)
T ss_dssp             EEEEEECCCSC
T ss_pred             cEEEEecCCCC
Confidence            88999999986

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.69  E-value=1.5e-13  Score=130.96  Aligned_cols=260  Identities=12%  Similarity=0.042  Sum_probs=176.3

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecc--cccceeecceeccceeeecccc
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEV--ENTEIRRLGVKISEKVLSQLEN  166 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  166 (406)
                      .+..+|..+.    +.+.++.. ...+..+.|+|||+++++++ ++.  |..+|..  +.+..            ..+..
T Consensus       178 ~V~viD~~t~----~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~--V~viD~~~~t~~~v------------~~i~~  238 (567)
T 1qks_A          178 QIALIDGSTY----EIKTVLDT-GYAVHISRLSASGRYLFVIGRDGK--VNMIDLWMKEPTTV------------AEIKI  238 (567)
T ss_dssp             EEEEEETTTC----CEEEEEEC-SSCEEEEEECTTSCEEEEEETTSE--EEEEETTSSSCCEE------------EEEEC
T ss_pred             eEEEEECCCC----eEEEEEeC-CCCccceEECCCCCEEEEEcCCCe--EEEEECCCCCCcEe------------EEEec
Confidence            6777777663    34445543 33567999999999999887 444  5555553  33222            22333


Q ss_pred             cCcEEEEEEC----CCCCEEEEeeC-CCeEEEEeCCCcceEeeeecc-----------CCceeEEEEccCCCEEE-EEeC
Q 015490          167 VGQQLALTFD----SEGTIFAAGSE-NGNLRVFKWPSLEIILNESEA-----------HASVKDLSFSPDGKFLV-SLGN  229 (406)
Q Consensus       167 ~~~v~~~~~s----~~g~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~-----------~~~i~~~~~s~~~~~l~-s~s~  229 (406)
                      ......++|+    |||+++++++. +++|.++|..+.+.+..+...           ...+..+..++++..++ ....
T Consensus       239 G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~  318 (567)
T 1qks_A          239 GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE  318 (567)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC
Confidence            3456789999    69998887765 589999999998887665421           12577888888866544 4456


Q ss_pred             CCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeee-----cCCCeE
Q 015490          230 RGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQV-----VREPVS  304 (406)
Q Consensus       230 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~-----~~~~i~  304 (406)
                      .|.|.++|..+.+...............+.|+|++++     ++++...++.|.++|+.+++.+..+..     |.+.-.
T Consensus       319 ~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~-----~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~  393 (567)
T 1qks_A          319 TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRY-----FITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGA  393 (567)
T ss_dssp             TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCE-----EEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCE
T ss_pred             CCeEEEEecCCCccceeeeeeccccccCceECCCCCE-----EEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccce
Confidence            7899999987754332222223345668899999985     444445678899999999988777655     221111


Q ss_pred             EEEEcCCCCEEE-EEe-CCCcEEEEECCC-------ceEEEEeecccccceEEEEEcCCCCeEEEEEC-------CCcEE
Q 015490          305 SFNVSADGKLLA-VGT-ASGDISIIDSSS-------LQVRTAVKKAHLGIVTALAFSYDSRALVSASM-------DSSVR  368 (406)
Q Consensus       305 ~~~~sp~~~~l~-~~~-~dg~i~i~d~~~-------~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~-------dg~i~  368 (406)
                      .+ ++|++..+. ++. .++.|.++|..+       .+.+.++. .....-..+..+|++++|.+...       .++|.
T Consensus       394 ~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~-~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~  471 (567)
T 1qks_A          394 NF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFP-ALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVA  471 (567)
T ss_dssp             EE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE-CSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEE
T ss_pred             ee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEe-cCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEE
Confidence            22 588755444 443 368999999987       67777775 33333345778999999887663       35899


Q ss_pred             EEEecCC
Q 015490          369 VTVIEDK  375 (406)
Q Consensus       369 iw~~~~~  375 (406)
                      ++|+.+.
T Consensus       472 v~d~~~~  478 (567)
T 1qks_A          472 VFDIKAM  478 (567)
T ss_dssp             EEEGGGC
T ss_pred             EEECCcc
Confidence            9999887

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.69  E-value=7.3e-15  Score=145.38  Aligned_cols=244  Identities=11%  Similarity=0.040  Sum_probs=159.4

Q ss_pred             cCCCeEEEEe--cC--CeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCC-----eEEE
Q 015490          123 PHGDGIICAL--QN--SCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENG-----NLRV  193 (406)
Q Consensus       123 p~~~~l~~~~--~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg-----~i~v  193 (406)
                      |+|++++...  .+  ...||..+...++....+...    .+ ...+...+..++|||||++||.+..++     .|++
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~----~l-~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v  155 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPN----IL-SDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKF  155 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGG----GG-CTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEE
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHH----Hh-ccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEE
Confidence            8898887664  22  236787765433321111110    00 001223578899999999998776543     8999


Q ss_pred             EeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCC----------------EEEEEcCCCeee--eecccC-Ccce
Q 015490          194 FKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGP----------------GRVWDLASSAVA--TPLAKE-NDEL  254 (406)
Q Consensus       194 wd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~----------------i~iwd~~~~~~~--~~~~~~-~~~~  254 (406)
                      ||+.+++.......+ ..+..++|+|||+.|+.++.++.                |++|++.+++..  ..+... +...
T Consensus       156 ~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~  234 (710)
T 2xdw_A          156 MKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKW  234 (710)
T ss_dssp             EETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTC
T ss_pred             EECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeE
Confidence            999999876533322 23678999999999999988766                999999887632  222221 2334


Q ss_pred             EEEEEEEcCCCCceEEEEEEEcCC--CcEEEEEeCCC------ce-EEEEeeecCCCeEEEEEcCCCCEEEEEeCC----
Q 015490          255 FASCRFSPLNNEDYVLYIAAITDR--GASIVTWNTTT------WK-RIRTKQVVREPVSSFNVSADGKLLAVGTAS----  321 (406)
Q Consensus       255 ~~~~~~~~~~~~~~~l~~~~~~~~--~~~i~~~d~~~------~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d----  321 (406)
                      +..+.|+|+++.   +++....+.  +..|++||+.+      +. ....+..+...+.. .|+|+|+.|+..+..    
T Consensus       235 ~~~~~~SpDg~~---l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~  310 (710)
T 2xdw_A          235 MGGAELSDDGRY---VLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPN  310 (710)
T ss_dssp             EEEEEECTTSCE---EEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTT
T ss_pred             EEEEEEcCCCCE---EEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCC
Confidence            678999999985   222222121  67999999986      43 34555555555544 588999988877653    


Q ss_pred             CcEEEEECCCceE--EEEeeccccc--ceEEEEEcCCCCeEEEEECCCc--EEEEEecCCcC
Q 015490          322 GDISIIDSSSLQV--RTAVKKAHLG--IVTALAFSYDSRALVSASMDSS--VRVTVIEDKKK  377 (406)
Q Consensus       322 g~i~i~d~~~~~~--~~~~~~~~~~--~v~~~~~sp~~~~l~s~s~dg~--i~iw~~~~~~~  377 (406)
                      +.|.+||+.++..  ...+. .|..  .+..+.|++++.++++...|+.  |++|++.+++.
T Consensus       311 ~~l~~~d~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~  371 (710)
T 2xdw_A          311 YRLINIDFTDPEESKWKVLV-PEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGAL  371 (710)
T ss_dssp             CEEEEEETTSCCGGGCEEEE-CCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCE
T ss_pred             CEEEEEeCCCCCcccceecc-CCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCE
Confidence            3599999987642  23333 3433  6788999988888888888885  55566656654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.69  E-value=1e-14  Score=130.61  Aligned_cols=240  Identities=12%  Similarity=0.017  Sum_probs=162.5

Q ss_pred             CCceEEEEccCCCeEEEE-ecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEE
Q 015490          114 DLPYRMAIHPHGDGIICA-LQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLR  192 (406)
Q Consensus       114 ~~v~~~~~sp~~~~l~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~  192 (406)
                      ..|.+++|++++..++.. .++.++.|.  .   ....           ....+...+.+++|+++|++++++..++.|.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~-----------~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~   69 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTIT--A---EPWL-----------EISKKGLQLEGLNFDRQGQLFLLDVFEGNIF   69 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEE--C---EEEE-----------EEESSCCCEEEEEECTTSCEEEEETTTCEEE
T ss_pred             cccceeeecCCccceeEEeecccCcccc--c---ceeE-----------EEeccCccccCcEECCCCCEEEEECCCCEEE
Confidence            446778888887765544 366667661  1   1111           1112335678999999999888888899999


Q ss_pred             EEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCC----CCEEEEEcCCCeeeeecc-cCCcceEEEEEEEcCCCCc
Q 015490          193 VFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNR----GPGRVWDLASSAVATPLA-KENDELFASCRFSPLNNED  267 (406)
Q Consensus       193 vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d----~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  267 (406)
                      +||..+++.......+...+.+++++++|+++++...+    +.|.+||..++.....+. ......+..++++|+++  
T Consensus        70 ~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~--  147 (333)
T 2dg1_A           70 KINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG--  147 (333)
T ss_dssp             EECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC--
T ss_pred             EEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCC--
Confidence            99998877654433445579999999999987777666    689999998776543332 12334578899999986  


Q ss_pred             eEEEEEEEcC-----CCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCC-ceEEEE---
Q 015490          268 YVLYIAAITD-----RGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVG-TASGDISIIDSSS-LQVRTA---  337 (406)
Q Consensus       268 ~~l~~~~~~~-----~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~-~~dg~i~i~d~~~-~~~~~~---  337 (406)
                        +++ +...     ..+.|+.+|..+++..... .....+..++|+|+|+.|+++ +.++.|.+||+.+ +.....   
T Consensus       148 --l~v-~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~  223 (333)
T 2dg1_A          148 --FYF-TDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGA  223 (333)
T ss_dssp             --EEE-EECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEE
T ss_pred             --EEE-EeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccc
Confidence              222 2221     1467888887765543322 223457899999999866555 4578999999863 322211   


Q ss_pred             --ee--cccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490          338 --VK--KAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       338 --~~--~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                        ..  .++ ..+..++++++|+++++...++.|.+||. +++.
T Consensus       224 ~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~  265 (333)
T 2dg1_A          224 TIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYP  265 (333)
T ss_dssp             EEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCE
T ss_pred             eEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCE
Confidence              10  112 35788999999998888878899999997 3443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.69  E-value=9.1e-15  Score=145.33  Aligned_cols=246  Identities=11%  Similarity=0.043  Sum_probs=157.7

Q ss_pred             CCCCceEEEEccCCCeEEEEe--cCC--eEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeC
Q 015490          112 DSDLPYRMAIHPHGDGIICAL--QNS--CRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE  187 (406)
Q Consensus       112 h~~~v~~~~~sp~~~~l~~~~--~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  187 (406)
                      |...+..++|||||++|+.+.  ++.  ..||.++..+++.... .           .....+..++|+|| +.|+.++.
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~-----------~~~~~~~~~~wspD-~~l~~~~~  227 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-E-----------LKWVKFSGLAWLGN-DALLYSRF  227 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-E-----------EEEEESCCCEESTT-SEEEEEEC
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-c-----------CCCceeccEEEECC-CEEEEEEe
Confidence            444688999999999999876  233  5688888776553221 0           01111246899999 99988876


Q ss_pred             CCe--------------EEEEeCCCcce--Eeeeec--cCCceeEEEEccCCCEEEEEeCCC-----CEEEEEcCCC--e
Q 015490          188 NGN--------------LRVFKWPSLEI--ILNESE--AHASVKDLSFSPDGKFLVSLGNRG-----PGRVWDLASS--A  242 (406)
Q Consensus       188 dg~--------------i~vwd~~~~~~--~~~~~~--~~~~i~~~~~s~~~~~l~s~s~d~-----~i~iwd~~~~--~  242 (406)
                      ++.              |++|++.++..  ...+..  +...+..+.|+|||++|+..+.++     .|++||+.++  +
T Consensus       228 ~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~  307 (741)
T 1yr2_A          228 AEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIG  307 (741)
T ss_dssp             CCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEEC
T ss_pred             cCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCc
Confidence            554              89999877652  122222  222588999999999988877543     7999999877  3


Q ss_pred             eeeecccCCcceEEEEEEEcCCCCceEEEEEEE-cCCCcEEEEEeCCCc--eEEEEeeecCCCeEEEEEcCCCCEEEEEe
Q 015490          243 VATPLAKENDELFASCRFSPLNNEDYVLYIAAI-TDRGASIVTWNTTTW--KRIRTKQVVREPVSSFNVSADGKLLAVGT  319 (406)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~d~~~~--~~~~~~~~~~~~i~~~~~sp~~~~l~~~~  319 (406)
                      ....+..+..... .. ++|+++.   +++... ...++.|++||+.++  .....+..+...+..++++ ++.++++..
T Consensus       308 ~~~~l~~~~~~~~-~~-~~~dg~~---l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~  381 (741)
T 1yr2_A          308 PVTALIPDLKAQW-DF-VDGVGDQ---LWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYI  381 (741)
T ss_dssp             CCEEEECSSSSCE-EE-EEEETTE---EEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEE
T ss_pred             ccEEecCCCCceE-EE-EeccCCE---EEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEE
Confidence            1344433333322 33 3588875   322222 123678999999874  3333333334456677887 566777778


Q ss_pred             CCCcEEEEECC-CceEEEEeecccccceEEEEEcCCCCeEEEE-E---CCCcEEEEEecCCc
Q 015490          320 ASGDISIIDSS-SLQVRTAVKKAHLGIVTALAFSYDSRALVSA-S---MDSSVRVTVIEDKK  376 (406)
Q Consensus       320 ~dg~i~i~d~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~-s---~dg~i~iw~~~~~~  376 (406)
                      .|+..+||.+. +++....+...+.+.+..+.++|+++.|+.. +   ..++|++||+.+++
T Consensus       382 ~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          382 HDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             ETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             ECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            88876666543 3555555542246778899999998766532 2   34789999998765

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.68  E-value=2.4e-14  Score=128.37  Aligned_cols=291  Identities=8%  Similarity=-0.031  Sum_probs=183.7

Q ss_pred             CCCCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEec---------CC
Q 015490           65 DIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQ---------NS  135 (406)
Q Consensus        65 ~~~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~---------~~  135 (406)
                      .+|+.+.++++..+....     .-.+..+|..+.    +.+.++.....+ . ++++|||++++++..         ..
T Consensus        40 ~~pd~~~vyV~~~~~~~~-----~~~V~ViD~~t~----~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~  108 (386)
T 3sjl_D           40 PAPDARRVYVNDPAHFAA-----VTQQFVIDGEAG----RVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERT  108 (386)
T ss_dssp             CCCCTTEEEEEECGGGCS-----SEEEEEEETTTT----EEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred             cCCCCCEEEEEcCcccCC-----CCEEEEEECCCC----eEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCC
Confidence            356677777775431100     126777787663    345566554454 4 999999999887641         23


Q ss_pred             eEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeC--CCeEEEEeCCCcceEeeeeccCCcee
Q 015490          136 CRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE--NGNLRVFKWPSLEIILNESEAHASVK  213 (406)
Q Consensus       136 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~  213 (406)
                      -.|..||..+.+....+.+... +.   .........++|+|||++++++..  ++.|.++|+.+++.+..+....  . 
T Consensus       109 ~~VsviD~~t~~v~~~I~v~~g-~r---~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-  181 (386)
T 3sjl_D          109 DYVEVFDPVTLLPTADIELPDA-PR---FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-  181 (386)
T ss_dssp             EEEEEECTTTCCEEEEEEETTC-CC---CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-
T ss_pred             CEEEEEECCCCeEEEEEECCCc-cc---cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-
Confidence            3466677776665555433110 00   001123456899999999888764  6899999999999887774322  1 


Q ss_pred             EEEEccCCCEEEEEeCCCCEEEEEcCC-Ceeeeecc----cCCcceEEEEEEE-cCCCCceEEEEEEEcCCCcEEEEEeC
Q 015490          214 DLSFSPDGKFLVSLGNRGPGRVWDLAS-SAVATPLA----KENDELFASCRFS-PLNNEDYVLYIAAITDRGASIVTWNT  287 (406)
Q Consensus       214 ~~~~s~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~i~~~d~  287 (406)
                      ...+....+.+++.+.||.+.+.++.+ ++......    ...........|. ++++.   +  ..  +.++.|++.|+
T Consensus       182 ~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~---~--~v--s~~g~V~v~d~  254 (386)
T 3sjl_D          182 YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRL---V--WP--TYTGKIHQIDL  254 (386)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEE---E--EE--BTTSEEEEEEC
T ss_pred             ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcE---E--EE--eCCCEEEEEEC
Confidence            222333455677778888888888865 44322111    1111111224554 45531   2  22  23689999999


Q ss_pred             CCce--EEEEeee----------cCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEECCCceEEEEeecccccc
Q 015490          288 TTWK--RIRTKQV----------VREPVSSFNVSADGKLLAVGTA----------SGDISIIDSSSLQVRTAVKKAHLGI  345 (406)
Q Consensus       288 ~~~~--~~~~~~~----------~~~~i~~~~~sp~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~  345 (406)
                      .+..  ....+..          .......++++++++.+++...          .+.|.++|+.+++.+..+..+  ..
T Consensus       255 ~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg--~~  332 (386)
T 3sjl_D          255 SSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG--HE  332 (386)
T ss_dssp             TTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EE
T ss_pred             CCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC--CC
Confidence            7654  2222220          0122345777999998888653          257999999999999998733  47


Q ss_pred             eEEEEEcCCCC-eEEEEE-CCCcEEEEEecCCcCCCCch
Q 015490          346 VTALAFSYDSR-ALVSAS-MDSSVRVTVIEDKKKSGGLN  382 (406)
Q Consensus       346 v~~~~~sp~~~-~l~s~s-~dg~i~iw~~~~~~~~~~~~  382 (406)
                      +.++.+++|++ +|++.. .++.|.++|..+++.+.+++
T Consensus       333 ~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~  371 (386)
T 3sjl_D          333 IDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN  371 (386)
T ss_dssp             ECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             cceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEec
Confidence            88999999997 666654 58999999999999877654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.67  E-value=6.7e-14  Score=121.56  Aligned_cols=214  Identities=9%  Similarity=-0.001  Sum_probs=155.9

Q ss_pred             CCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEee
Q 015490          125 GDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILN  204 (406)
Q Consensus       125 ~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~  204 (406)
                      ++.|++++ ..-+|+.|+..+++...++...          ....+.++.++|+|+++++  .++.|..||. +++.+..
T Consensus         5 ~~~lv~~~-~~~~v~~~d~~tG~~~w~~~~~----------~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~   70 (276)
T 3no2_A            5 QHLLVGGS-GWNKIAIINKDTKEIVWEYPLE----------KGWECNSVAATKAGEILFS--YSKGAKMITR-DGRELWN   70 (276)
T ss_dssp             CEEEEECT-TCSEEEEEETTTTEEEEEEECC----------TTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEE
T ss_pred             CcEEEeeC-CCCEEEEEECCCCeEEEEeCCC----------ccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEE
Confidence            44555554 3335666777666666554321          1135788999999998883  4678999998 8888888


Q ss_pred             eeccC-CceeEEEEccCCCEEEEEeC-CCCEEEEEcCCCeeeeecccC-----CcceEEEEEEEcCCCCceEEEEEEEcC
Q 015490          205 ESEAH-ASVKDLSFSPDGKFLVSLGN-RGPGRVWDLASSAVATPLAKE-----NDELFASCRFSPLNNEDYVLYIAAITD  277 (406)
Q Consensus       205 ~~~~~-~~i~~~~~s~~~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~  277 (406)
                      +..+. ..+.++.+.++|+.+++.+. ++.+..+|. +++.+..+...     .......+++.++++.      +++..
T Consensus        71 ~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~------lv~~~  143 (276)
T 3no2_A           71 IAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNY------LVPLF  143 (276)
T ss_dssp             EECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCE------EEEET
T ss_pred             EcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCE------EEEec
Confidence            77653 37889999999999998887 777777775 67666554321     1112334567888873      34556


Q ss_pred             CCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccc------cceEEEEE
Q 015490          278 RGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHL------GIVTALAF  351 (406)
Q Consensus       278 ~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------~~v~~~~~  351 (406)
                      .++.|..||.. ++.+.++... ....++...++|+.+++++.++.|..+|..+++.+.++.. +.      ..+..+..
T Consensus       144 ~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~-~~~~~~~l~~~~~~~~  220 (276)
T 3no2_A          144 ATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNA-NDIEGVQLFFVAQLFP  220 (276)
T ss_dssp             TTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEG-GGSBSCCCSEEEEEEE
T ss_pred             CCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecC-CCCCCccccccccceE
Confidence            78999999998 8988888765 3456788899999999988888999999999999888852 21      23778888


Q ss_pred             cCCCCeEEEEE
Q 015490          352 SYDSRALVSAS  362 (406)
Q Consensus       352 sp~~~~l~s~s  362 (406)
                      .++|..+++..
T Consensus       221 ~~~G~i~v~~~  231 (276)
T 3no2_A          221 LQNGGLYICNW  231 (276)
T ss_dssp             CTTSCEEEEEE
T ss_pred             cCCCCEEEEec
Confidence            99998887763

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.67  E-value=1.6e-14  Score=129.19  Aligned_cols=206  Identities=13%  Similarity=0.088  Sum_probs=149.9

Q ss_pred             CcEEEEEECCCCCEEEEeeCC------------------------CeEEEEeCCCcceEeeeecc-CCceeEEEEccCCC
Q 015490          168 GQQLALTFDSEGTIFAAGSEN------------------------GNLRVFKWPSLEIILNESEA-HASVKDLSFSPDGK  222 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~~~d------------------------g~i~vwd~~~~~~~~~~~~~-~~~i~~~~~s~~~~  222 (406)
                      +.+.+++++|+|+++++...+                        +.|.+||..+++........ ......++++++|+
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~  103 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN  103 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC
Confidence            678999999999999887776                        47999999888876554422 23788999999999


Q ss_pred             EEEEEeCCCCEEEEEcCCCe-eeeecc--------cCCcceEEEEEEEc-CCCCceEEEEEEEcC-CCcEEEEEeCCCce
Q 015490          223 FLVSLGNRGPGRVWDLASSA-VATPLA--------KENDELFASCRFSP-LNNEDYVLYIAAITD-RGASIVTWNTTTWK  291 (406)
Q Consensus       223 ~l~s~s~d~~i~iwd~~~~~-~~~~~~--------~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-~~~~i~~~d~~~~~  291 (406)
                      ++++...++.|++||..... .+..+.        .........++++| ++.      +.++.. .++.|++|| .+++
T Consensus       104 l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~------lyv~d~~~~~~I~~~~-~~g~  176 (329)
T 3fvz_A          104 YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA------VFVSDGYCNSRIVQFS-PSGK  176 (329)
T ss_dssp             EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC------EEEEECSSCCEEEEEC-TTSC
T ss_pred             EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe------EEEEeCCCCCeEEEEc-CCCC
Confidence            88888888999999986542 333332        11223467899999 554      333443 688999999 4566


Q ss_pred             EEEEeeecC----------CCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCceEEEEeec-ccccceEEEEEcC------
Q 015490          292 RIRTKQVVR----------EPVSSFNVSAD-GKLLAVGTASGDISIIDSSSLQVRTAVKK-AHLGIVTALAFSY------  353 (406)
Q Consensus       292 ~~~~~~~~~----------~~i~~~~~sp~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~sp------  353 (406)
                      .+..+....          .....++++|+ ++++++...++.|++||..+++.+..+.. .+...+..++|+|      
T Consensus       177 ~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~  256 (329)
T 3fvz_A          177 FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAV  256 (329)
T ss_dssp             EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEE
T ss_pred             EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEe
Confidence            666664322          23789999998 66666667789999999998888877742 3556788999999      


Q ss_pred             CCCeEEEEECCCcEEEEEecCCcCCCC
Q 015490          354 DSRALVSASMDSSVRVTVIEDKKKSGG  380 (406)
Q Consensus       354 ~~~~l~s~s~dg~i~iw~~~~~~~~~~  380 (406)
                      +|+.+++.+.+.+|++|++.+++.+..
T Consensus       257 ~g~~~v~~~~~~~v~~~~~~~g~~~~~  283 (329)
T 3fvz_A          257 NGKPYFGDQEPVQGFVMNFSSGEIIDV  283 (329)
T ss_dssp             ECCCCTTCSCCCCEEEEETTTCCEEEE
T ss_pred             CCCEEeccCCCcEEEEEEcCCCeEEEE
Confidence            333333334456899999988876544

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.65  E-value=8.2e-14  Score=121.92  Aligned_cols=199  Identities=7%  Similarity=0.087  Sum_probs=145.7

Q ss_pred             CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeec------cCCceeEEEE-ccCCCEEEEEeC-CCCEEEEEcC
Q 015490          168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESE------AHASVKDLSF-SPDGKFLVSLGN-RGPGRVWDLA  239 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~------~~~~i~~~~~-s~~~~~l~s~s~-d~~i~iwd~~  239 (406)
                      ..+.+++++++|+++++...++.|.+||.. ++....+..      +...+.++++ .++++.+++... ++.|.+|| .
T Consensus        30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~  107 (286)
T 1q7f_A           30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-Q  107 (286)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-T
T ss_pred             CCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-C
Confidence            567899999999988888889999999976 555544432      2236789999 467766655533 78999999 5


Q ss_pred             CCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeee--cCCCeEEEEEcCCCCEEEE
Q 015490          240 SSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQV--VREPVSSFNVSADGKLLAV  317 (406)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~i~~~~~sp~~~~l~~  317 (406)
                      +++....+.......+..++++++++      +.++...++.|.+||.. ++.+..+..  +...+..++++|+|+++++
T Consensus       108 ~g~~~~~~~~~~~~~~~~i~~~~~g~------l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~  180 (286)
T 1q7f_A          108 YGQFVRKFGATILQHPRGVTVDNKGR------IIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFIS  180 (286)
T ss_dssp             TSCEEEEECTTTCSCEEEEEECTTSC------EEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred             CCcEEEEecCccCCCceEEEEeCCCC------EEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEE
Confidence            67766666544444578899999886      33444567899999965 455555542  3346899999999997777


Q ss_pred             EeCCCcEEEEECCCceEEEEeec-ccccceEEEEEcCCCCeEEEEECCC-cEEEEEecCCcC
Q 015490          318 GTASGDISIIDSSSLQVRTAVKK-AHLGIVTALAFSYDSRALVSASMDS-SVRVTVIEDKKK  377 (406)
Q Consensus       318 ~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~s~s~dg-~i~iw~~~~~~~  377 (406)
                      ...++.|++||.. ++.+..+.. ++...+..++++++|+++++...++ .|.+|+. +++.
T Consensus       181 ~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~  240 (286)
T 1q7f_A          181 DNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQL  240 (286)
T ss_dssp             EGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCE
T ss_pred             ECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCE
Confidence            7778999999975 555555531 2235688999999999888887776 9999995 3443

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.65  E-value=2.6e-13  Score=129.32  Aligned_cols=230  Identities=9%  Similarity=0.049  Sum_probs=161.9

Q ss_pred             CeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCC--CcceEe
Q 015490          126 DGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWP--SLEIIL  203 (406)
Q Consensus       126 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~--~~~~~~  203 (406)
                      ..++++..+...|+.+|..+++.+.            .+.....+..+.|+|||+++++++.|+.|.+||+.  +++.+.
T Consensus       167 ~~~~V~~~~~~~V~viD~~t~~v~~------------~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~  234 (567)
T 1qks_A          167 NLFSVTLRDAGQIALIDGSTYEIKT------------VLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA  234 (567)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEE------------EEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEE
T ss_pred             ceEEEEeCCCCeEEEEECCCCeEEE------------EEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeE
Confidence            3455554444466667776544333            33344456789999999999999999999999995  777776


Q ss_pred             eeeccCCceeEEEEc----cCCCEEEEEeC-CCCEEEEEcCCCeeeeecccC----------CcceEEEEEEEcCCCCce
Q 015490          204 NESEAHASVKDLSFS----PDGKFLVSLGN-RGPGRVWDLASSAVATPLAKE----------NDELFASCRFSPLNNEDY  268 (406)
Q Consensus       204 ~~~~~~~~i~~~~~s----~~~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~  268 (406)
                      .+.... ....++|+    |||+++++++. ++++.++|..+.+.+..+...          ....+..+..++++..  
T Consensus       235 ~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~--  311 (567)
T 1qks_A          235 EIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE--  311 (567)
T ss_dssp             EEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSE--
T ss_pred             EEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCE--
Confidence            665433 46799999    69999888775 589999999999888766432          1224667888888764  


Q ss_pred             EEEEEEEcCCCcEEEEEeCCCceEEEEee-ecCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCceEEEEeec----cc
Q 015490          269 VLYIAAITDRGASIVTWNTTTWKRIRTKQ-VVREPVSSFNVSADGKLLAVGTA-SGDISIIDSSSLQVRTAVKK----AH  342 (406)
Q Consensus       269 ~l~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~----~~  342 (406)
                         +++.....+.|.++|....+.+.... ........+.|+|+|+++++++. ++.|.++|+.+++.+..+..    .|
T Consensus       312 ---~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Ph  388 (567)
T 1qks_A          312 ---FIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPH  388 (567)
T ss_dssp             ---EEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBC
T ss_pred             ---EEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCC
Confidence               33444778999999987754332222 22345678999999999887764 78899999999998777653    23


Q ss_pred             ccceEEEEEcCCC-CeEEEEE-CCCcEEEEEecC
Q 015490          343 LGIVTALAFSYDS-RALVSAS-MDSSVRVTVIED  374 (406)
Q Consensus       343 ~~~v~~~~~sp~~-~~l~s~s-~dg~i~iw~~~~  374 (406)
                      .+.-..+ ++|++ ..+++.. .+++|.++|..+
T Consensus       389 pg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          389 PGRGANF-VHPTFGPVWATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             CTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             Cccceee-ECCCCCcEEEeCCCCCCeEEEecCCC
Confidence            3222222 57874 4445553 468999999987

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.65  E-value=5.9e-13  Score=116.95  Aligned_cols=240  Identities=9%  Similarity=0.006  Sum_probs=163.1

Q ss_pred             cCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCe
Q 015490          111 TDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGN  190 (406)
Q Consensus       111 ~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  190 (406)
                      .+...+.++++.++|..+++.. ....|+.++.. +. ...+..         ......+.+++++++|.++++...++.
T Consensus        12 ~~~~~~~~i~~d~~g~l~v~~~-~~~~v~~~d~~-~~-~~~~~~---------~~~~~~~~~i~~~~~g~l~v~~~~~~~   79 (299)
T 2z2n_A           12 NQDTGPYGITVSDKGKVWITQH-KANMISCINLD-GK-ITEYPL---------PTPDAKVMCLTISSDGEVWFTENAANK   79 (299)
T ss_dssp             SSSCCEEEEEECTTSCEEEEET-TTTEEEEECTT-CC-EEEEEC---------SSTTCCEEEEEECTTSCEEEEETTTTE
T ss_pred             CcCCCccceEECCCCCEEEEec-CCCcEEEEcCC-CC-eEEecC---------CcccCceeeEEECCCCCEEEeCCCCCe
Confidence            4456789999999998666554 22255556654 22 111111         012356889999999998888777889


Q ss_pred             EEEEeCCCcceE-eeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceE
Q 015490          191 LRVFKWPSLEII-LNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYV  269 (406)
Q Consensus       191 i~vwd~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (406)
                      |..||.. ++.. .........+.++++.++++.+++...++.|.+||. +++............+..+++.+++.    
T Consensus        80 i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~----  153 (299)
T 2z2n_A           80 IGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNA----  153 (299)
T ss_dssp             EEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSC----
T ss_pred             EEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCC----
Confidence            9999976 3332 122223347899999999988777777889999998 55443322222334577899999886    


Q ss_pred             EEEEEEcCCCcEEEEEeCCCceEEEE-eeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEE
Q 015490          270 LYIAAITDRGASIVTWNTTTWKRIRT-KQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTA  348 (406)
Q Consensus       270 l~~~~~~~~~~~i~~~d~~~~~~~~~-~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~  348 (406)
                        +.++...++.|..||. +++.... .......+.+++++++|++.++...++.|.+||. +++........+...+.+
T Consensus       154 --l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~  229 (299)
T 2z2n_A          154 --LWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHA  229 (299)
T ss_dssp             --EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEE
T ss_pred             --EEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCcee
Confidence              2233455688999999 6554432 2223456889999999997776666889999999 665443222234567899


Q ss_pred             EEEcCCCCeEEEEECCCcEEEEEe
Q 015490          349 LAFSYDSRALVSASMDSSVRVTVI  372 (406)
Q Consensus       349 ~~~sp~~~~l~s~s~dg~i~iw~~  372 (406)
                      ++++++|+.+++...++.|..||.
T Consensus       230 i~~~~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          230 ITAGAGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             EEECSTTCEEEEETTTTEEEEEET
T ss_pred             EEECCCCCEEEeccCCceEEEECC
Confidence            999999997776657788999997

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.65  E-value=5.5e-12  Score=110.70  Aligned_cols=241  Identities=7%  Similarity=-0.025  Sum_probs=159.4

Q ss_pred             CCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeE
Q 015490          112 DSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNL  191 (406)
Q Consensus       112 h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i  191 (406)
                      +...+.++++.++|..+++.. ....|+.++.. +. ...+..         -.....+.++++.++|+++++...++.|
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~-~~~~i~~~~~~-g~-~~~~~~---------~~~~~~~~~i~~~~~g~l~v~~~~~~~i  122 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTEN-AANKIGRITKK-GI-IKEYTL---------PNPDSAPYGITEGPNGDIWFTEMNGNRI  122 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEET-TTTEEEEECTT-SC-EEEEEC---------SSTTCCEEEEEECTTSCEEEEETTTTEE
T ss_pred             ccCceeeEEECCCCCEEEeCC-CCCeEEEECCC-Cc-EEEEeC---------CCcCCCceeeEECCCCCEEEEecCCceE
Confidence            457789999999998666554 22356666653 11 111111         0123568899999999888887778899


Q ss_pred             EEEeCCCcceEeee-eccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEE
Q 015490          192 RVFKWPSLEIILNE-SEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVL  270 (406)
Q Consensus       192 ~vwd~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  270 (406)
                      .+||. +++..... ......+.++++.++++..++...++.|..||. +++............+..+++.+++.     
T Consensus       123 ~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-----  195 (299)
T 2z2n_A          123 GRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDA-----  195 (299)
T ss_dssp             EEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-----
T ss_pred             EEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCC-----
Confidence            99998 55443222 223347899999999987777767789999999 66554321122234467899999876     


Q ss_pred             EEEEEcCCCcEEEEEeCCCceEEEE-eeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEE
Q 015490          271 YIAAITDRGASIVTWNTTTWKRIRT-KQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTAL  349 (406)
Q Consensus       271 ~~~~~~~~~~~i~~~d~~~~~~~~~-~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~  349 (406)
                       +.++...++.|..||. +++.... ...+...+.+++++++|+++++...++.|..||. +++........+...+.++
T Consensus       196 -l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i  272 (299)
T 2z2n_A          196 -LWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGI  272 (299)
T ss_dssp             -EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEE
T ss_pred             -EEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceE
Confidence             2233345788999999 6554322 2223467899999999986666556789999998 4543322112345678999


Q ss_pred             EEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490          350 AFSYDSRALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       350 ~~sp~~~~l~s~s~dg~i~iw~~~~~~  376 (406)
                      ++ ++|+++++.+ .+.+..++.++++
T Consensus       273 ~~-~~g~l~v~~~-~~~l~~~~~~~~~  297 (299)
T 2z2n_A          273 CF-DGETIWFAME-CDKIGKLTLIKDN  297 (299)
T ss_dssp             EE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred             Ee-cCCCEEEEec-CCcEEEEEcCccc
Confidence            99 8888776654 6678888887653

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.64  E-value=1.3e-13  Score=125.80  Aligned_cols=289  Identities=9%  Similarity=-0.050  Sum_probs=183.7

Q ss_pred             CCCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEec---------CCe
Q 015490           66 IRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQ---------NSC  136 (406)
Q Consensus        66 ~~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~---------~~~  136 (406)
                      +++.+.++++..+....     .-.+..+|..+.    +.+.++.....+  .++++|||++++++..         +.-
T Consensus        81 ~~~~~~vyV~n~~~~~~-----~~~VsVID~~t~----~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~  149 (426)
T 3c75_H           81 APDARRVYIQDPAHFAA-----ITQQFVIDGSTG----RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTD  149 (426)
T ss_dssp             CCCTTEEEEEECTTTCS-----SEEEEEEETTTT----EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred             CCCCCEEEEECCCcCCC-----CCeEEEEECCCC----EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCC
Confidence            45556677765432110     036777777663    345556544444  8999999999888752         234


Q ss_pred             EEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeC--CCeEEEEeCCCcceEeeeeccCCceeE
Q 015490          137 RLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE--NGNLRVFKWPSLEIILNESEAHASVKD  214 (406)
Q Consensus       137 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~  214 (406)
                      .|..+|..+.+....+.+.. .+.   +........+.|+|||++++++..  ++.|.+.|+.+++.+..+.-...    
T Consensus       150 ~VsviD~~t~~vv~~I~v~g-~~r---~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----  221 (426)
T 3c75_H          150 YVEVFDPVTFLPIADIELPD-APR---FLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----  221 (426)
T ss_dssp             EEEEECTTTCCEEEEEEETT-CCC---CCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----
T ss_pred             EEEEEECCCCcEEEEEECCC-ccc---cccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----
Confidence            67778887766655544310 000   000122346799999999998864  57899999999998877654321    


Q ss_pred             EEEccCC-CEEEEEeCCCCEEEEEcCCCeeee----ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC
Q 015490          215 LSFSPDG-KFLVSLGNRGPGRVWDLASSAVAT----PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT  289 (406)
Q Consensus       215 ~~~s~~~-~~l~s~s~d~~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~  289 (406)
                      ....|++ +.+++.+.||.+.+.+..+++...    .+..........+.|.+++..   ++  .. ...+.+.+.|...
T Consensus       222 ~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~---~~--~~-s~~g~V~ViD~~~  295 (426)
T 3c75_H          222 YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGR---LV--WP-TYTGKIFQADLTA  295 (426)
T ss_dssp             EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCE---EE--EE-BTTSEEEEEEECS
T ss_pred             eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCE---EE--EE-eCCCcEEEEeccC
Confidence            2333433 455666677777777775554432    122222222223567888775   22  22 2357899999865


Q ss_pred             ceEE--EEeee----------cCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEECCCceEEEEeecccccceE
Q 015490          290 WKRI--RTKQV----------VREPVSSFNVSADGKLLAVGTA----------SGDISIIDSSSLQVRTAVKKAHLGIVT  347 (406)
Q Consensus       290 ~~~~--~~~~~----------~~~~i~~~~~sp~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~v~  347 (406)
                      ....  ..+..          .......++++|+++.+++...          ++.|.++|+.+.+.+..+.-  .....
T Consensus       296 ~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v--g~~P~  373 (426)
T 3c75_H          296 EGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL--GHEID  373 (426)
T ss_dssp             SCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE--EEEEC
T ss_pred             CceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC--CCCcC
Confidence            4422  11110          0011223789999998877643          35799999999999999862  33578


Q ss_pred             EEEEcCCCC-eEEEEE-CCCcEEEEEecCCcCCCCc
Q 015490          348 ALAFSYDSR-ALVSAS-MDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       348 ~~~~sp~~~-~l~s~s-~dg~i~iw~~~~~~~~~~~  381 (406)
                      ++.|+|||+ ++++.. .++.|.++|+.+.+.+..+
T Consensus       374 gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          374 SINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             EEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             eEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            999999999 888887 5899999999999877654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.64  E-value=5.1e-13  Score=118.40  Aligned_cols=247  Identities=10%  Similarity=0.077  Sum_probs=160.3

Q ss_pred             EecCCCCceEEEEccCCCeEEE-------Ee-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCC-C
Q 015490          109 LRTDSDLPYRMAIHPHGDGIIC-------AL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSE-G  179 (406)
Q Consensus       109 ~~~h~~~v~~~~~sp~~~~l~~-------~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g  179 (406)
                      +...-..+.+++|++++..+++       .. ++  .|+.|+..+++.. .+..+      ........+.+++++++ |
T Consensus        13 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~--~i~~~d~~~g~~~-~~~~~------~~~~~~~~~~~i~~~~~~g   83 (314)
T 1pjx_A           13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAG--EILRIDLKTGKKT-VICKP------EVNGYGGIPAGCQCDRDAN   83 (314)
T ss_dssp             EECCCTTCEEEEECTTSCEEEEETTCEETTEECC--EEEEECTTTCCEE-EEECC------EETTEECCEEEEEECSSSS
T ss_pred             hhccCCCccCceECCCCCEEEEEeccccCCCCCC--EEEEEeCCCCcEE-EEEec------ccCCCCCCCceEEEecCCC
Confidence            3444556789999999987776       33 44  5666665443321 11000      00012256889999999 7


Q ss_pred             CEEEEeeCCCeEEEEeCCCcceEee-eecc----CCceeEEEEccCCCEEEEEeCC---------------CCEEEEEcC
Q 015490          180 TIFAAGSENGNLRVFKWPSLEIILN-ESEA----HASVKDLSFSPDGKFLVSLGNR---------------GPGRVWDLA  239 (406)
Q Consensus       180 ~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~----~~~i~~~~~s~~~~~l~s~s~d---------------~~i~iwd~~  239 (406)
                      +++++.. .+.|.+||.+ ++.... ....    ...+.+++++++|++.++...+               +.|..||..
T Consensus        84 ~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  161 (314)
T 1pjx_A           84 QLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD  161 (314)
T ss_dssp             EEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT
T ss_pred             cEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC
Confidence            6555543 4479999987 665432 2111    1258899999999877776554               467777765


Q ss_pred             CCeeeeecccCCcceEEEEEEE----cCCCCceEEEEEEEcCCCcEEEEEeCC-CceE-----EEEeeecC-CCeEEEEE
Q 015490          240 SSAVATPLAKENDELFASCRFS----PLNNEDYVLYIAAITDRGASIVTWNTT-TWKR-----IRTKQVVR-EPVSSFNV  308 (406)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~i~~~d~~-~~~~-----~~~~~~~~-~~i~~~~~  308 (406)
                       ++......  .......++|+    ++++.     +.++...++.|.+||.. +++.     ...+..+. ..+..+++
T Consensus       162 -g~~~~~~~--~~~~~~~i~~~~~~d~dg~~-----l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~  233 (314)
T 1pjx_A          162 -GQMIQVDT--AFQFPNGIAVRHMNDGRPYQ-----LIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDF  233 (314)
T ss_dssp             -SCEEEEEE--EESSEEEEEEEECTTSCEEE-----EEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEE
T ss_pred             -CCEEEecc--CCCCcceEEEecccCCCCCE-----EEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEE
Confidence             44333221  11235678999    88763     33444567899999976 3432     22222222 45788999


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEE-EEECCCcEEEEEecCC
Q 015490          309 SADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALV-SASMDSSVRVTVIEDK  375 (406)
Q Consensus       309 sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-s~s~dg~i~iw~~~~~  375 (406)
                      +++|+++++...++.|.+||..+++....+. .+...+.+++|+|+++.|. +...++.|..|++...
T Consensus       234 d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          234 DEDNNLLVANWGSSHIEVFGPDGGQPKMRIR-CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             BTTCCEEEEEETTTEEEEECTTCBSCSEEEE-CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             CCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe-CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            9999988887778899999998777666664 4557789999999999554 4455688999998753

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.64  E-value=4.4e-14  Score=122.75  Aligned_cols=191  Identities=14%  Similarity=0.135  Sum_probs=151.3

Q ss_pred             CCCEEEEeeCCCeEEEEeCCCcceEeeeeccC-CceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEE
Q 015490          178 EGTIFAAGSENGNLRVFKWPSLEIILNESEAH-ASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFA  256 (406)
Q Consensus       178 ~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~  256 (406)
                      .+++|++++.++.|.+||.++++.+..+..+. ..+.++.++|+|++++  +.++.|..||. +++.+..+..+....+.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~   80 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ   80 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence            45789999999999999999999998887765 3789999999999888  45778999999 88888888765445677


Q ss_pred             EEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC------CCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 015490          257 SCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR------EPVSSFNVSADGKLLAVGTASGDISIIDSS  330 (406)
Q Consensus       257 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~------~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~  330 (406)
                      ++.+.++++.     +++....++.|..+|. +++.+..+....      .....+++.++|+++++...++.|..||..
T Consensus        81 ~~~~~~dG~~-----lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~  154 (276)
T 3no2_A           81 TARILPDGNA-----LVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN  154 (276)
T ss_dssp             EEEECTTSCE-----EEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT
T ss_pred             ccEECCCCCE-----EEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC
Confidence            8899999983     3333333778888886 667776665321      134456788999999999999999999998


Q ss_pred             CceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCC
Q 015490          331 SLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGG  380 (406)
Q Consensus       331 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~  380 (406)
                       ++.+.++. . ...+.++...++|+.+++++.+++|..+|..+++.+-+
T Consensus       155 -G~~~w~~~-~-~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~  201 (276)
T 3no2_A          155 -GQLLNSVK-L-SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRR  201 (276)
T ss_dssp             -SCEEEEEE-C-SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEE
T ss_pred             -CCEEEEEE-C-CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEE
Confidence             99988885 2 34566788899999999888888899999888876433

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.64  E-value=5.6e-14  Score=138.65  Aligned_cols=238  Identities=11%  Similarity=0.014  Sum_probs=153.6

Q ss_pred             ccCCCeEEEEe-cC---CeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEE-----EeeCCCeEE
Q 015490          122 HPHGDGIICAL-QN---SCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFA-----AGSENGNLR  192 (406)
Q Consensus       122 sp~~~~l~~~~-~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-----~~~~dg~i~  192 (406)
                      +|+|++++... ++   ...||..+...+.....+..+    . ..-.+...+..++|||||++||     .|+.+.+|+
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~----~-~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~  150 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPN----G-WSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLH  150 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGG----G-SSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchH----H-hccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEE
Confidence            47899888765 22   467888876443321111110    0 0001223588999999999999     445567899


Q ss_pred             EEeCCCcceE-eeeeccCCceeEEEEccCCCEEEEEeCCCC-------------EEEEEcCCCeee--eeccc-CCcceE
Q 015490          193 VFKWPSLEII-LNESEAHASVKDLSFSPDGKFLVSLGNRGP-------------GRVWDLASSAVA--TPLAK-ENDELF  255 (406)
Q Consensus       193 vwd~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~-------------i~iwd~~~~~~~--~~~~~-~~~~~~  255 (406)
                      +||+.+++.+ .... .......++|+|||+.|++++.|..             |++|++.++...  ..+.. .+...+
T Consensus       151 v~dl~tg~~~~~~~~-~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~  229 (695)
T 2bkl_A          151 VIDVDSGEWSKVDVI-EGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTF  229 (695)
T ss_dssp             EEETTTCCBCSSCCB-SCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCE
T ss_pred             EEECCCCCCcCCccc-CcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEE
Confidence            9999998764 2111 1112268999999999999988776             999999887632  22222 222457


Q ss_pred             EEEEEEcCCCCceEEEEEEEcC-CCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC----CCcEEEEECC
Q 015490          256 ASCRFSPLNNEDYVLYIAAITD-RGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA----SGDISIIDSS  330 (406)
Q Consensus       256 ~~~~~~~~~~~~~~l~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~----dg~i~i~d~~  330 (406)
                      ..+.|+|+++.   +++..... ....|+++|..+++. ..+..+...+....+ ++|+ ++..+.    ++.|.+||+.
T Consensus       230 ~~~~~SpDG~~---l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~  303 (695)
T 2bkl_A          230 LQSDLSRDGKY---LFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPA  303 (695)
T ss_dssp             EEEEECTTSCC---EEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTT
T ss_pred             EEEEECCCCCE---EEEEEeCCCCceEEEEEcCCCCce-EEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCC
Confidence            78999999986   22222222 345788888766543 344445455566666 5666 554443    5789999998


Q ss_pred             CceE---EEEeeccc-ccceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490          331 SLQV---RTAVKKAH-LGIVTALAFSYDSRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       331 ~~~~---~~~~~~~~-~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~  373 (406)
                      ++..   ...+. .+ ...+..++|+ ++.++++...|+..++|.+.
T Consensus       304 ~~~~~~~~~l~~-~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          304 KPARASWKEIVP-EDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             BCSGGGCEEEEC-CCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred             CCCccCCeEEec-CCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence            7652   23332 23 4567888998 67788889999999988776

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.62  E-value=8.9e-14  Score=122.37  Aligned_cols=200  Identities=8%  Similarity=-0.013  Sum_probs=143.8

Q ss_pred             cCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeee
Q 015490          167 VGQQLALTFDSEGT-IFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT  245 (406)
Q Consensus       167 ~~~v~~~~~s~~g~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~  245 (406)
                      .....+++|+|+|+ +++++..++.|..|+..++  ...+..+...+.+++++++|+++++...++.|.+||..+++...
T Consensus        27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~  104 (296)
T 3e5z_A           27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWES  104 (296)
T ss_dssp             CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEE
T ss_pred             CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEE
Confidence            35577899999998 7888888999999998877  44555555678999999999987777777899999998877544


Q ss_pred             ecccCC---cceEEEEEEEcCCCCceEEEEEEE--cC-------------CCcEEEEEeCCCceEEEEeeecCCCeEEEE
Q 015490          246 PLAKEN---DELFASCRFSPLNNEDYVLYIAAI--TD-------------RGASIVTWNTTTWKRIRTKQVVREPVSSFN  307 (406)
Q Consensus       246 ~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~--~~-------------~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~  307 (406)
                      ......   ...+..++++|+++    ++++..  +.             ..+.|+.++.. ++. ..+..+......++
T Consensus       105 ~~~~~~~~~~~~~~~i~~d~~G~----l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi~  178 (296)
T 3e5z_A          105 IADSFEGKKLNSPNDVCLAPDGS----LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDRVKPNGLA  178 (296)
T ss_dssp             EECEETTEECCCCCCEEECTTSC----EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCCSSEEEEE
T ss_pred             EeeccCCCCCCCCCCEEECCCCC----EEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCCCCCccEE
Confidence            322111   12345789999987    222211  11             24578888776 443 33444456678999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECC-CceE---EEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCC
Q 015490          308 VSADGKLLAVGTASGDISIIDSS-SLQV---RTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKS  378 (406)
Q Consensus       308 ~sp~~~~l~~~~~dg~i~i~d~~-~~~~---~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~  378 (406)
                      |+|+|+.+++.+.++.|++|++. +++.   ...+ ..+...+.+++++++|+++++.  ++.|.+|+.. ++.+
T Consensus       179 ~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~  249 (296)
T 3e5z_A          179 FLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDEL  249 (296)
T ss_dssp             ECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEE
T ss_pred             ECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEE
Confidence            99999998777778999999986 4544   3333 3455667889999999877665  7889999975 4443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.61  E-value=3e-12  Score=115.55  Aligned_cols=291  Identities=16%  Similarity=0.154  Sum_probs=176.7

Q ss_pred             CCCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEe-cC-CCCceEEEE-----------c--cCCCeEEE
Q 015490           66 IRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELR-TD-SDLPYRMAI-----------H--PHGDGIIC  130 (406)
Q Consensus        66 ~~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~h-~~~v~~~~~-----------s--p~~~~l~~  130 (406)
                      .+.+.++++....-.....-+..+.+..+++++.... +.+.++. .+ .+....+.|           +  +++++|++
T Consensus        22 ~~~e~~~y~~~~~~~~~~~~~d~la~vDvdp~s~ty~-~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v  100 (462)
T 2ece_A           22 APPEDLAYVACLYTGTGINRADFIAVVDVNPKSETYS-KIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIV  100 (462)
T ss_dssp             SCCCSEEEEEEECTTTTCCCCCEEEEEECCTTSTTTT-SEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEE
T ss_pred             CCcceEEEEEeeccCCCCCCCCeEEEEECCCCCCCcc-eEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEE
Confidence            4566777665433212222456777777777665442 2333222 11 123334444           7  88999999


Q ss_pred             EecCCeEEEEEecccc-cceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCC------CeEEEEeCCCcceEe
Q 015490          131 ALQNSCRLFEWDEVEN-TEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSEN------GNLRVFKWPSLEIIL  203 (406)
Q Consensus       131 ~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d------g~i~vwd~~~~~~~~  203 (406)
                      .+-++-+|+.+|..+. ...+....- ....+..-.+......+..+|+| +++++..+      |.|.++|..+++.+.
T Consensus       101 ~~l~s~~I~viD~~t~p~~p~~~k~i-e~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~  178 (462)
T 2ece_A          101 PGLRSSRIYIIDTKPNPREPKIIKVI-EPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLG  178 (462)
T ss_dssp             EBTTTCCEEEEECCSCTTSCEEEEEE-CHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEE
T ss_pred             ccCCCCeEEEEECCCCCCCceeeeee-chhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEE
Confidence            8844446666665432 111110000 00000000011245677889999 66666554      789999999999888


Q ss_pred             eeeccCC---ceeEEEEccCCCEEEEEe-------------------CCCCEEEEEcCCCeeeeecccC-CcceEEEEEE
Q 015490          204 NESEAHA---SVKDLSFSPDGKFLVSLG-------------------NRGPGRVWDLASSAVATPLAKE-NDELFASCRF  260 (406)
Q Consensus       204 ~~~~~~~---~i~~~~~s~~~~~l~s~s-------------------~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~  260 (406)
                      .+.....   .-.++.|+|+++.+++..                   .+.+|.+||+.+++...++... .+.....+.|
T Consensus       179 ~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f  258 (462)
T 2ece_A          179 KWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRP  258 (462)
T ss_dssp             ECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEE
T ss_pred             EEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEe
Confidence            8764322   245688999999888774                   3679999999999888877654 2334445656


Q ss_pred             --EcCCCCceEEEEEEE---cCCCcEEEEEeCCCce--EEEEeeec------------------CCCeEEEEEcCCCCEE
Q 015490          261 --SPLNNEDYVLYIAAI---TDRGASIVTWNTTTWK--RIRTKQVV------------------REPVSSFNVSADGKLL  315 (406)
Q Consensus       261 --~~~~~~~~~l~~~~~---~~~~~~i~~~d~~~~~--~~~~~~~~------------------~~~i~~~~~sp~~~~l  315 (406)
                        +|+++.   +|++..   ...++.|.+|....++  ....+...                  ......+.+||||++|
T Consensus       259 ~~~Pdg~~---aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfL  335 (462)
T 2ece_A          259 LHDPTKLM---GFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFL  335 (462)
T ss_dssp             CSSTTCCE---EEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEE
T ss_pred             eECCCCCE---EEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEE
Confidence              999885   333221   1156777776554332  12211000                  2346789999999999


Q ss_pred             EEEeC-CCcEEEEECC---CceEEEEeecccc-------------cceEEEEEcCCCCeEEEEE
Q 015490          316 AVGTA-SGDISIIDSS---SLQVRTAVKKAHL-------------GIVTALAFSYDSRALVSAS  362 (406)
Q Consensus       316 ~~~~~-dg~i~i~d~~---~~~~~~~~~~~~~-------------~~v~~~~~sp~~~~l~s~s  362 (406)
                      +++.. .+.|.+||+.   +.+.+..+..+-.             +....++++|||++|+++.
T Consensus       336 YVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          336 YLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             EEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            99887 6889999985   3455555543210             1357899999999999887

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.61  E-value=1.7e-12  Score=119.35  Aligned_cols=237  Identities=8%  Similarity=-0.006  Sum_probs=158.1

Q ss_pred             CCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCC--eE
Q 015490          114 DLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENG--NL  191 (406)
Q Consensus       114 ~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg--~i  191 (406)
                      ..+..|+|+++++.+++.. ...+|+.++..++.....            ........ ++|+++++.|+++..++  .|
T Consensus       131 ~~P~~la~d~~g~lyv~d~-~~~~I~~id~~~g~~~~~------------~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I  196 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQR-DDPRVRLISVDDNKVTTV------------HPGFKGGK-PAVTKDKQRVYSIGWEGTHTV  196 (409)
T ss_dssp             CCEEEEEECSTTEEEEEET-TTTEEEEEETTTTEEEEE------------EETCCBCB-CEECTTSSEEEEEBSSTTCEE
T ss_pred             CCceEEEEeCCCCEEEEec-CCCcEEEEECCCCEEEEe------------eccCCCCc-eeEecCCCcEEEEecCCCceE
Confidence            4678999999988444443 333666676643322111            11122223 89999999888887765  78


Q ss_pred             EEEeCCCcceEeee---ec-cCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeee----cccCCcce-EEEEEEEc
Q 015490          192 RVFKWPSLEIILNE---SE-AHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATP----LAKENDEL-FASCRFSP  262 (406)
Q Consensus       192 ~vwd~~~~~~~~~~---~~-~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~----~~~~~~~~-~~~~~~~~  262 (406)
                      .+++...+.....+   .. ....+.+++++|++..|+++..++.|+.||..++.....    ........ ...++|+|
T Consensus       197 ~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p  276 (409)
T 3hrp_A          197 YVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYF  276 (409)
T ss_dssp             EEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEET
T ss_pred             EEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeC
Confidence            89987655443232   12 334678999999655666677788899999987654322    11111111 12899999


Q ss_pred             CCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC---------------CCeEEEEEcCCCCEEEEEe-CCCcEEE
Q 015490          263 LNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR---------------EPVSSFNVSADGKLLAVGT-ASGDISI  326 (406)
Q Consensus       263 ~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~---------------~~i~~~~~sp~~~~l~~~~-~dg~i~i  326 (406)
                      ++..     +.++...++.|+.|+....  +..+.++.               .....++++|+|+++++-. .++.|+.
T Consensus       277 ~~g~-----lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~  349 (409)
T 3hrp_A          277 VDSN-----FYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRK  349 (409)
T ss_dssp             TTTE-----EEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEE
T ss_pred             CCCE-----EEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEE
Confidence            7653     3345567889999998754  33333321               3478999999999777777 7889999


Q ss_pred             EECCCceEEEEeeccc---------------ccceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490          327 IDSSSLQVRTAVKKAH---------------LGIVTALAFSYDSRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       327 ~d~~~~~~~~~~~~~~---------------~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~  373 (406)
                      |++.++......  ++               -.....++++++|.++++-..+++|+.++++
T Consensus       350 ~~~~~G~v~~~~--g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          350 LDILDGYVSTVA--GQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             EETTTTEEEEEE--ECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred             EECCCCEEEEEe--CCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence            998777654333  22               2357899999999888888888899988764

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.60  E-value=2.5e-12  Score=113.16  Aligned_cols=228  Identities=11%  Similarity=0.145  Sum_probs=151.3

Q ss_pred             CCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeE
Q 015490          112 DSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNL  191 (406)
Q Consensus       112 h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i  191 (406)
                      +.....+..|+|++..|+.+.....+|+.++..++..             ..+.....+.+++++++|+++++ . ++.|
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-------------~~~~~~~~~~~i~~~~dG~l~v~-~-~~~l   75 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-------------QRVTMDAPVSSVALRQSGGYVAT-I-GTKF   75 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-------------EEEECSSCEEEEEEBTTSSEEEE-E-TTEE
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-------------EEEeCCCceEEEEECCCCCEEEE-E-CCeE
Confidence            3445568899998777776664444777777654321             11223467899999999995554 4 5689


Q ss_pred             EEEeCCCcceEeeeecc----CCceeEEEEccCCCEEEEEeCC---------CCEEEEEcCC-CeeeeecccCCcceEEE
Q 015490          192 RVFKWPSLEIILNESEA----HASVKDLSFSPDGKFLVSLGNR---------GPGRVWDLAS-SAVATPLAKENDELFAS  257 (406)
Q Consensus       192 ~vwd~~~~~~~~~~~~~----~~~i~~~~~s~~~~~l~s~s~d---------~~i~iwd~~~-~~~~~~~~~~~~~~~~~  257 (406)
                      .+||.++++........    ...+++++++|+|++.++...+         ..-.+|.+.. ++... +.. .......
T Consensus        76 ~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~-~~~~png  153 (297)
T 3g4e_A           76 CALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFD-QVDISNG  153 (297)
T ss_dssp             EEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEE-EESBEEE
T ss_pred             EEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-Eee-ccccccc
Confidence            99999877654322211    1257899999999966654322         2345555543 33222 211 1223568


Q ss_pred             EEEEcCCCCceEEEEEEEcCCCcEEEEEeC--CCceEE-----EEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 015490          258 CRFSPLNNEDYVLYIAAITDRGASIVTWNT--TTWKRI-----RTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSS  330 (406)
Q Consensus       258 ~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~--~~~~~~-----~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~  330 (406)
                      ++|+|+++.     +.++...++.|..||+  .++...     ..+.........++++++|++.++....+.|.+||..
T Consensus       154 i~~spdg~~-----lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~  228 (297)
T 3g4e_A          154 LDWSLDHKI-----FYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPV  228 (297)
T ss_dssp             EEECTTSCE-----EEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTT
T ss_pred             eEEcCCCCE-----EEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCC
Confidence            999999985     3344456789999986  454431     2222223567899999999888777778889999999


Q ss_pred             CceEEEEeecccccceEEEEEc-CCCCeEEEEE
Q 015490          331 SLQVRTAVKKAHLGIVTALAFS-YDSRALVSAS  362 (406)
Q Consensus       331 ~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~s~s  362 (406)
                      +++.+..+. .+...+++++|. |+++.|..++
T Consensus       229 tG~~~~~i~-~p~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          229 TGKRLQTVK-LPVDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             TCCEEEEEE-CSSSBEEEEEEESGGGCEEEEEE
T ss_pred             CceEEEEEE-CCCCCceEEEEeCCCCCEEEEEc
Confidence            899888885 566779999998 8887765544

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.59  E-value=2.2e-12  Score=115.25  Aligned_cols=198  Identities=10%  Similarity=0.025  Sum_probs=144.2

Q ss_pred             cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecc
Q 015490          169 QQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLA  248 (406)
Q Consensus       169 ~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  248 (406)
                      ....+.+. +++++++...++.|.+||..+++.+..+.. ......++++++++..++...++.|.+||..+++....+.
T Consensus        45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~  122 (328)
T 3dsm_A           45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE  122 (328)
T ss_dssp             CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred             cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence            45667774 445666666689999999999998877743 3468899999998544444378999999999998876665


Q ss_pred             cCCc----ceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCC---
Q 015490          249 KEND----ELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAS---  321 (406)
Q Consensus       249 ~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d---  321 (406)
                      ....    .....+++  ++..   +|+. ..+.++.|.++|+.+++.+..+... .....+.++|+|++++++..+   
T Consensus       123 ~g~~~~~~~~p~~i~~--~~~~---lyv~-~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~  195 (328)
T 3dsm_A          123 CPDMDMESGSTEQMVQ--YGKY---VYVN-CWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEG  195 (328)
T ss_dssp             CTTCCTTTCBCCCEEE--ETTE---EEEE-ECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTT
T ss_pred             cCCccccCCCcceEEE--ECCE---EEEE-cCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccC
Confidence            4321    02345666  3332   3322 2224789999999999988877654 345789999999877766554   


Q ss_pred             -------CcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490          322 -------GDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       322 -------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                             +.|.++|..+++....+.......+..++|+|+++.|.++..  .|.+||+.+++.
T Consensus       196 ~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~  256 (328)
T 3dsm_A          196 SPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRV  256 (328)
T ss_dssp             CSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSC
T ss_pred             CccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCce
Confidence                   789999999998877764222346889999999998887654  899999988775

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.56  E-value=1.1e-12  Score=130.48  Aligned_cols=240  Identities=11%  Similarity=0.054  Sum_probs=153.4

Q ss_pred             ccCCCeEEEEe-cC---CeEEEEEecc---cccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCC-----C
Q 015490          122 HPHGDGIICAL-QN---SCRLFEWDEV---ENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSEN-----G  189 (406)
Q Consensus       122 sp~~~~l~~~~-~~---~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-----g  189 (406)
                      +|+|++++... ++   ...||..+..   .+.....++.+    .+ ...+...+..++|||||++||.+..+     .
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~----~l-~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~  189 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPN----TW-AKDGATALDAWAASDDGRLLAYSVQDGGSDWR  189 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGG----GC-C----EEEEEEEECTTSSEEEEEEEETTCSEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHH----Hh-ccCCCEEEEeEEECCCCCEEEEEEcCCCCceE
Confidence            48999988765 22   3678888764   22221111110    00 00112357889999999999887553     4


Q ss_pred             eEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCC--------------EEEEEcCCCee--eeecccC-Cc
Q 015490          190 NLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGP--------------GRVWDLASSAV--ATPLAKE-ND  252 (406)
Q Consensus       190 ~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~--------------i~iwd~~~~~~--~~~~~~~-~~  252 (406)
                      .|++||+.+++.+... .+...+..++|+|| +.|+.++.++.              |++|++.++..  ...+... +.
T Consensus       190 ~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~  267 (741)
T 1yr2_A          190 TVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELP  267 (741)
T ss_dssp             EEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCT
T ss_pred             EEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCC
Confidence            6999999999875432 12223468999999 99998887654              88999977652  1222221 12


Q ss_pred             ceEEEEEEEcCCCCceEEEEEEEcC--CCcEEEEEeCCCc--eEEEEeeecCCCeEEEEEcCCCCEEEEEeCC----CcE
Q 015490          253 ELFASCRFSPLNNEDYVLYIAAITD--RGASIVTWNTTTW--KRIRTKQVVREPVSSFNVSADGKLLAVGTAS----GDI  324 (406)
Q Consensus       253 ~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~i~~~d~~~~--~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d----g~i  324 (406)
                      ..+..+.|+|+++.   +++.....  ....|++||+.++  +....+..+....... ++|+|+.|+..+.+    +.|
T Consensus       268 ~~~~~~~~SpDG~~---l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l  343 (741)
T 1yr2_A          268 KRGHGASVSSDGRW---VVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKI  343 (741)
T ss_dssp             TCEEEEEECTTSCE---EEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEE
T ss_pred             eEEEEEEECCCCCE---EEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEE
Confidence            24678999999985   22222222  3568999999876  3144555454444444 34899988887763    459


Q ss_pred             EEEECCCc-eEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490          325 SIIDSSSL-QVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       325 ~i~d~~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~  373 (406)
                      .+||+.++ .....+...+...+..+.|+ ++.++++...|+..+||.+.
T Consensus       344 ~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          344 VRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             EEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred             EEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence            99999874 23333333455567778887 56778888899988888775

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.56  E-value=5.1e-13  Score=131.61  Aligned_cols=245  Identities=13%  Similarity=0.083  Sum_probs=158.6

Q ss_pred             cCCCCceEEEEccCCCeEEEEe--cCC--eEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEee
Q 015490          111 TDSDLPYRMAIHPHGDGIICAL--QNS--CRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGS  186 (406)
Q Consensus       111 ~h~~~v~~~~~sp~~~~l~~~~--~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  186 (406)
                      +|...+..++|||||++|+.+.  .+.  ..||.++..+++....           .+. ......++|+ ||+.|+.++
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-----------~~~-~~k~~~~~Ws-Dg~~l~y~~  192 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-----------PLK-DVKFSGISWL-GNEGFFYSS  192 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-----------EEE-EEESCCCEEE-TTTEEEEEE
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-----------ccC-CceeccEEEe-CCCEEEEEE
Confidence            3556788999999999998764  232  6788888776543221           000 0112467899 999999888


Q ss_pred             CCC-------------eEEEEeCCCcce----Eeeeec-cCCceeEEEEccCCCEEEEEeC----CCCEEEEEcCCCe-e
Q 015490          187 ENG-------------NLRVFKWPSLEI----ILNESE-AHASVKDLSFSPDGKFLVSLGN----RGPGRVWDLASSA-V  243 (406)
Q Consensus       187 ~dg-------------~i~vwd~~~~~~----~~~~~~-~~~~i~~~~~s~~~~~l~s~s~----d~~i~iwd~~~~~-~  243 (406)
                      .+.             .|++|++.++..    +..... +...+..+.|+|||++|+....    ...|+++|+.++. .
T Consensus       193 ~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~  272 (693)
T 3iuj_A          193 YDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAP  272 (693)
T ss_dssp             SSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCC
T ss_pred             ecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCc
Confidence            774             399999977642    222222 3335778999999998765432    3479999997763 2


Q ss_pred             eeecccCCcceEEEEEEEcCCCCceEEEEEEEc-CCCcEEEEEeCCCceE--EEEeeecCCCeEEEEEcCCCCEEEEEeC
Q 015490          244 ATPLAKENDELFASCRFSPLNNEDYVLYIAAIT-DRGASIVTWNTTTWKR--IRTKQVVREPVSSFNVSADGKLLAVGTA  320 (406)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~i~~~d~~~~~~--~~~~~~~~~~i~~~~~sp~~~~l~~~~~  320 (406)
                      ...+..+... .... +++++..   +++.... ...+.|..+|+.++..  ...+..+...+.  .|++++++|+....
T Consensus       273 ~~~l~~~~~~-~~~~-~~~~g~~---l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~  345 (693)
T 3iuj_A          273 LLTVQGDLDA-DVSL-VDNKGST---LYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYM  345 (693)
T ss_dssp             CEEEECSSSS-CEEE-EEEETTE---EEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEE
T ss_pred             eEEEeCCCCc-eEEE-EeccCCE---EEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEE
Confidence            3334333332 2223 6777775   3222221 2257899999987653  344555555554  89999998887765


Q ss_pred             CC---cEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECC----CcEEEEEecCCc
Q 015490          321 SG---DISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMD----SSVRVTVIEDKK  376 (406)
Q Consensus       321 dg---~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d----g~i~iw~~~~~~  376 (406)
                      ++   .|++||+..+. ...+...+.+.+..+.+++++..|+....+    ++|+.||+.+++
T Consensus       346 ~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          346 VDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             ETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             ECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            43   68999987544 344432355667788888888877655444    789999987664

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.56  E-value=7.4e-11  Score=103.46  Aligned_cols=239  Identities=7%  Similarity=-0.027  Sum_probs=155.9

Q ss_pred             cCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCe
Q 015490          111 TDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGN  190 (406)
Q Consensus       111 ~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  190 (406)
                      .+...+.++++.+++...++.. +...|+.++.. ++. ..+..         ......+.++++.++|+++++...++.
T Consensus        59 ~~~~~~~~i~~~~~g~l~v~~~-~~~~v~~~d~~-g~~-~~~~~---------~~~~~~~~~i~~~~~g~l~v~~~~~~~  126 (300)
T 2qc5_A           59 TPDAKVMCLIVSSLGDIWFTEN-GANKIGKLSKK-GGF-TEYPL---------PQPDSGPYGITEGLNGDIWFTQLNGDR  126 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEET-TTTEEEEECTT-SCE-EEEEC---------SSTTCCEEEEEECSTTCEEEEETTTTE
T ss_pred             CCCCcceeEEECCCCCEEEEec-CCCeEEEECCC-CCe-EEecC---------CCCCCCCccceECCCCCEEEEccCCCe
Confidence            3446789999999998666543 23356666654 221 11111         012256889999999998887776889


Q ss_pred             EEEEeCCCcceEee-eeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceE
Q 015490          191 LRVFKWPSLEIILN-ESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYV  269 (406)
Q Consensus       191 i~vwd~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (406)
                      |..+|.. ++.... .......+.++++.++++..++...++.|..+|. +++............+..+++.+++.    
T Consensus       127 i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~----  200 (300)
T 2qc5_A          127 IGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGA----  200 (300)
T ss_dssp             EEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS----
T ss_pred             EEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCC----
Confidence            9999987 554422 2223347899999999996666666788999998 55544321112234577899998875    


Q ss_pred             EEEEEEcCCCcEEEEEeCCCceEEEE-eeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEE
Q 015490          270 LYIAAITDRGASIVTWNTTTWKRIRT-KQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTA  348 (406)
Q Consensus       270 l~~~~~~~~~~~i~~~d~~~~~~~~~-~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~  348 (406)
                        +.++....+.|..||. +++.... .......+.+++++++|++.++...++.|..||.. ++............+.+
T Consensus       201 --l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~  276 (300)
T 2qc5_A          201 --LWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NTIQEYQLQTENAEPHG  276 (300)
T ss_dssp             --EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECCSTTCCCCC
T ss_pred             --EEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-CcEEEEECCccCCccce
Confidence              2333345678999998 4443332 22234568999999999866666567899999984 44332211123456889


Q ss_pred             EEEcCCCCeEEEEECCCcEEEEEec
Q 015490          349 LAFSYDSRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       349 ~~~sp~~~~l~s~s~dg~i~iw~~~  373 (406)
                      ++++++|+++++.. . .|..++.+
T Consensus       277 i~~~~~g~l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          277 ITFGKDGSVWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             EEECTTSCEEEECS-S-EEEEEEEC
T ss_pred             eEeCCCCCEEEEcc-C-ceEEeCCC
Confidence            99999998666544 4 67666653

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.55  E-value=2.3e-11  Score=106.71  Aligned_cols=239  Identities=11%  Similarity=0.025  Sum_probs=159.9

Q ss_pred             CCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeE
Q 015490          112 DSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNL  191 (406)
Q Consensus       112 h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i  191 (406)
                      ....+.++++.++|...++.. ....|..++.. ++ ...+..         -.....+.++++.++|+++++...++.|
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~-~~~~v~~~~~~-~~-~~~~~~---------~~~~~~~~~i~~~~~g~l~v~~~~~~~v   85 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQH-KANKISSLDQS-GR-IKEFEV---------PTPDAKVMCLIVSSLGDIWFTENGANKI   85 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEET-TTTEEEEECTT-SC-EEEEEC---------SSTTCCEEEEEECTTSCEEEEETTTTEE
T ss_pred             CCCCcceeeECCCCCEEEEcC-CCCeEEEECCC-Cc-eEEEEC---------CCCCCcceeEEECCCCCEEEEecCCCeE
Confidence            345778999999998666553 22245556554 22 111111         0123568899999999988777667899


Q ss_pred             EEEeCCCcceEee-eeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEE
Q 015490          192 RVFKWPSLEIILN-ESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVL  270 (406)
Q Consensus       192 ~vwd~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  270 (406)
                      ..||.. ++.... .......+.++++.+++++.++...++.|..+|.. ++............+..+++.++++     
T Consensus        86 ~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~-----  158 (300)
T 2qc5_A           86 GKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA-----  158 (300)
T ss_dssp             EEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSS-----
T ss_pred             EEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCC-----
Confidence            999987 554322 22223478999999999877777668889999987 5544221122234577899999886     


Q ss_pred             EEEEEcCCCcEEEEEeCCCceEEEE-eeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEE
Q 015490          271 YIAAITDRGASIVTWNTTTWKRIRT-KQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTAL  349 (406)
Q Consensus       271 ~~~~~~~~~~~i~~~d~~~~~~~~~-~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~  349 (406)
                       +.++...++.|..+|. +++.... .......+..++++++|++.++....+.|.+||. +++........+...+.++
T Consensus       159 -l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i  235 (300)
T 2qc5_A          159 -LWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAI  235 (300)
T ss_dssp             -EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred             -EEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEE
Confidence             2233345678999998 4444331 1123356889999999987776666778999998 4544433222345668899


Q ss_pred             EEcCCCCeEEEEECCCcEEEEEe
Q 015490          350 AFSYDSRALVSASMDSSVRVTVI  372 (406)
Q Consensus       350 ~~sp~~~~l~s~s~dg~i~iw~~  372 (406)
                      +++++|+++++...++.|..|+.
T Consensus       236 ~~d~~g~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          236 TAGKNSEIWFTEWGANQIGRITN  258 (300)
T ss_dssp             EECSTTCEEEEETTTTEEEEECT
T ss_pred             EECCCCCEEEeccCCCeEEEECC
Confidence            99999987776666788999987

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.54  E-value=2.4e-11  Score=108.30  Aligned_cols=223  Identities=14%  Similarity=0.034  Sum_probs=144.5

Q ss_pred             CceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEE
Q 015490          115 LPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVF  194 (406)
Q Consensus       115 ~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vw  194 (406)
                      ...+..|+|++..++........|+.++..+++. .            .+.....+.+++|+++|+++++. .+ .|.+|
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~-~------------~~~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~  114 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK-T------------VHALPFMGSALAKISDSKQLIAS-DD-GLFLR  114 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-E------------EEECSSCEEEEEEEETTEEEEEE-TT-EEEEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE-E------------EEECCCcceEEEEeCCCeEEEEE-CC-CEEEE
Confidence            3467899998776666552233677777654321 1            11223568899999999877654 44 59999


Q ss_pred             eCCCcceEeeeec---c-CCceeEEEEccCCCEEEEEeC------CCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCC
Q 015490          195 KWPSLEIILNESE---A-HASVKDLSFSPDGKFLVSLGN------RGPGRVWDLASSAVATPLAKENDELFASCRFSPLN  264 (406)
Q Consensus       195 d~~~~~~~~~~~~---~-~~~i~~~~~s~~~~~l~s~s~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (406)
                      |..+++.......   . ...+.+++++|+|+++++...      .+.|..++  +++......  .......++|+|++
T Consensus       115 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~--~~~~~~~i~~s~dg  190 (326)
T 2ghs_A          115 DTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA--DISIPNSICFSPDG  190 (326)
T ss_dssp             ETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE--EESSEEEEEECTTS
T ss_pred             ECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC--CCcccCCeEEcCCC
Confidence            9888775432211   1 126889999999997665442      23455555  454332221  11235689999999


Q ss_pred             CCceEEEEEEEcCCCcEEEEEeCC--Cc-e-----EEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEE
Q 015490          265 NEDYVLYIAAITDRGASIVTWNTT--TW-K-----RIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRT  336 (406)
Q Consensus       265 ~~~~~l~~~~~~~~~~~i~~~d~~--~~-~-----~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~  336 (406)
                      +.     +..+...++.|.+||..  ++ +     ....+.........++++++|++.++...++.|.+||. +++.+.
T Consensus       191 ~~-----lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~  264 (326)
T 2ghs_A          191 TT-----GYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIA  264 (326)
T ss_dssp             CE-----EEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEE
T ss_pred             CE-----EEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEE
Confidence            84     33344557899999985  55 2     12222222345678999999987777666788999998 566666


Q ss_pred             EeecccccceEEEEEc-CCCCeEEEEEC
Q 015490          337 AVKKAHLGIVTALAFS-YDSRALVSASM  363 (406)
Q Consensus       337 ~~~~~~~~~v~~~~~s-p~~~~l~s~s~  363 (406)
                      .+. .+...+.+++|+ ++++.|+.++.
T Consensus       265 ~i~-~~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          265 RYE-VPGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             EEE-CSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             EEE-CCCCCcEEEEEecCCCCEEEEEec
Confidence            664 455679999998 88877755543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.53  E-value=2.3e-12  Score=111.54  Aligned_cols=199  Identities=9%  Similarity=0.024  Sum_probs=137.6

Q ss_pred             cEEEEEECCCCCEEE-EeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeec
Q 015490          169 QQLALTFDSEGTIFA-AGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPL  247 (406)
Q Consensus       169 ~v~~~~~s~~g~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  247 (406)
                      ...+++++++|++++ +...++.|.+|+..+.............+.+++++++++.+++.. ++.|.+||....... .+
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~  102 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VL  102 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-EC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-ee
Confidence            678999999999777 547788999999765543322222334678999999998665555 889999998765433 23


Q ss_pred             ccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 015490          248 AKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISII  327 (406)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~  327 (406)
                      .......+..+++++++.    +  .++...++.|.+|+..+.............+.+++++++|+++++...++.|.+|
T Consensus       103 ~~~~~~~p~~i~~~~~g~----l--~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~  176 (270)
T 1rwi_B          103 PFDGLNYPEGLAVDTQGA----V--YVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKL  176 (270)
T ss_dssp             CCCSCSSEEEEEECTTCC----E--EEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEE
T ss_pred             ecCCcCCCcceEECCCCC----E--EEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEE
Confidence            222224577899999876    2  2333457789999876654433222222456889999999977776668899999


Q ss_pred             ECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490          328 DSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       328 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~  376 (406)
                      |........... .+...+.+++++++|.++++...++.|.+|+.....
T Consensus       177 ~~~~~~~~~~~~-~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~  224 (270)
T 1rwi_B          177 EAESNNQVVLPF-TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT  224 (270)
T ss_dssp             CTTTCCEEECCC-SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC
T ss_pred             ecCCCceEeecc-cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc
Confidence            988766544332 333668899999999877777778899999986543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.52  E-value=1.2e-11  Score=109.31  Aligned_cols=236  Identities=14%  Similarity=0.099  Sum_probs=150.6

Q ss_pred             ceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEE
Q 015490          105 PVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAA  184 (406)
Q Consensus       105 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  184 (406)
                      .+..+..+........|+|+++.|+.+.....+|+.|+.. ++ ...+           ......+..++++++|+++++
T Consensus        36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~-----------~~~~~~~~gl~~d~dG~l~v~  102 (305)
T 3dr2_A           36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVL-----------LDATAFTNGNAVDAQQRLVHC  102 (305)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEE-----------EESCSCEEEEEECTTSCEEEE
T ss_pred             ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEE-----------eCCCCccceeeECCCCCEEEE
Confidence            4555666667788999999999766665333467777652 22 1111           113356889999999997776


Q ss_pred             eeCCCeEEEEeCCCcceEeeeecc----CCceeEEEEccCCCEEEE----EeC-------------CCCEEEEEcCCCee
Q 015490          185 GSENGNLRVFKWPSLEIILNESEA----HASVKDLSFSPDGKFLVS----LGN-------------RGPGRVWDLASSAV  243 (406)
Q Consensus       185 ~~~dg~i~vwd~~~~~~~~~~~~~----~~~i~~~~~s~~~~~l~s----~s~-------------d~~i~iwd~~~~~~  243 (406)
                      ...++.|.+|+.+ ++........    ...+.+++++++|++.++    +..             .+.|..+|..+++.
T Consensus       103 ~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~  181 (305)
T 3dr2_A          103 EHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL  181 (305)
T ss_dssp             ETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC
T ss_pred             ECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE
Confidence            6566789999975 5432221111    124678999999997775    321             24577777766654


Q ss_pred             eeecccCCcceEEEEEEEcCCCCceEEEEEEEcC---CCcEEEEEeCCCceEE--EEe-eecCCCeEEEEEcCCCCEEEE
Q 015490          244 ATPLAKENDELFASCRFSPLNNEDYVLYIAAITD---RGASIVTWNTTTWKRI--RTK-QVVREPVSSFNVSADGKLLAV  317 (406)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~i~~~d~~~~~~~--~~~-~~~~~~i~~~~~sp~~~~l~~  317 (406)
                      ....   .......++|+|+++.   +|+.....   ..+.|+.||+......  ..+ .........++++++|++. +
T Consensus       182 ~~~~---~~~~p~gl~~spdg~~---lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lw-v  254 (305)
T 3dr2_A          182 QRMA---DLDHPNGLAFSPDEQT---LYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLW-S  254 (305)
T ss_dssp             EEEE---EESSEEEEEECTTSSE---EEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEE-E
T ss_pred             EEEe---cCCCCcceEEcCCCCE---EEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEE-E
Confidence            4332   1223567999999984   33332211   1378999998754411  111 1122345678999999944 4


Q ss_pred             EeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCC
Q 015490          318 GTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDS  365 (406)
Q Consensus       318 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg  365 (406)
                      ++.++ |.+|+. +++.+..+. .+. .+.+++|+++++.|..++.++
T Consensus       255 ~~~~g-v~~~~~-~g~~~~~~~-~~~-~~~~~~f~~d~~~L~it~~~~  298 (305)
T 3dr2_A          255 SSGTG-VCVFDS-DGQLLGHIP-TPG-TASNCTFDQAQQRLFITGGPC  298 (305)
T ss_dssp             CCSSE-EEEECT-TSCEEEEEE-CSS-CCCEEEECTTSCEEEEEETTE
T ss_pred             ecCCc-EEEECC-CCCEEEEEE-CCC-ceeEEEEeCCCCEEEEEcCCe
Confidence            44444 999998 466666665 333 588999999998888877664

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.48  E-value=7.5e-11  Score=106.85  Aligned_cols=237  Identities=10%  Similarity=0.016  Sum_probs=153.3

Q ss_pred             EccCCCeEEEEec-CCe---EEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEee----------
Q 015490          121 IHPHGDGIICALQ-NSC---RLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGS----------  186 (406)
Q Consensus       121 ~sp~~~~l~~~~~-~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~----------  186 (406)
                      ..|+++++++... +.-   .|+.+|..+++....            +.....- .+++||||++++++.          
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~------------i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~   94 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH------------VNGGFLP-NPVAAHSGSEFALASTSFSRIAKGK   94 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE------------ecCCCCC-CeEECCCCCEEEEEeccccccccCC
Confidence            3467776665532 221   566666655443322            2222222 899999999998875          


Q ss_pred             CCCeEEEEeCCCcceEeeeecc-------CCceeEEEEccCCCEEEEEeC--CCCEEEEEcCCCeeeee-cccCCcceEE
Q 015490          187 ENGNLRVFKWPSLEIILNESEA-------HASVKDLSFSPDGKFLVSLGN--RGPGRVWDLASSAVATP-LAKENDELFA  256 (406)
Q Consensus       187 ~dg~i~vwd~~~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~s~s~--d~~i~iwd~~~~~~~~~-~~~~~~~~~~  256 (406)
                      .++.|.+||..+.+.+..+...       ......++|+|||++|++++.  ++.|.++| .+++.+.. +....     
T Consensus        95 ~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~-----  168 (373)
T 2mad_H           95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT-----  168 (373)
T ss_pred             CCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc-----
Confidence            3678999999988877665432       123468999999999998874  47899999 99988877 65432     


Q ss_pred             EEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEee-----ecCCC-eEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 015490          257 SCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQ-----VVREP-VSSFNVSADGKLLAVGTASGDISIIDSS  330 (406)
Q Consensus       257 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~-----~~~~~-i~~~~~sp~~~~l~~~~~dg~i~i~d~~  330 (406)
                      ++.+.|.++.   .|  .+...++.+.++|. +++......     ....+ .....+.+++..++..+..+.+.+.|+.
T Consensus       169 ~~~~~~~~~~---~~--~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~  242 (373)
T 2mad_H          169 CYHIHPGAPS---TF--YLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADIS  242 (373)
T ss_pred             eEEEEeCCCc---eE--EEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEecc
Confidence            3556777765   22  23456889999999 777663322     11122 1234566766655555578899999997


Q ss_pred             Cce--EEEEeec--c-------cccceEEEEEcCCCCeEEEEEC----------CCcEEEEEecCCcCCCCch
Q 015490          331 SLQ--VRTAVKK--A-------HLGIVTALAFSYDSRALVSASM----------DSSVRVTVIEDKKKSGGLN  382 (406)
Q Consensus       331 ~~~--~~~~~~~--~-------~~~~v~~~~~sp~~~~l~s~s~----------dg~i~iw~~~~~~~~~~~~  382 (406)
                      +..  .+..+..  .       .......+.++|+++.+..+..          ++.|.+.|+.+++.+..++
T Consensus       243 ~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~  315 (373)
T 2mad_H          243 AAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS  315 (373)
T ss_pred             CCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE
Confidence            542  2222210  0       1122345789999888777543          3579999999988876664

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.47  E-value=1.4e-12  Score=117.34  Aligned_cols=181  Identities=13%  Similarity=0.010  Sum_probs=131.5

Q ss_pred             CceEEEEccCCCeEEEEecCCeEEEEEecccccceee-cceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEE
Q 015490          115 LPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRR-LGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRV  193 (406)
Q Consensus       115 ~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~v  193 (406)
                      .+..+++++....+++++...+.+|..+...  .... -..  ..+......... |+.++|  |+++|+++ .++.|++
T Consensus        39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~--~~~~~~~~--~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v  110 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSKAVVGELQLLR--DHITSDST--PLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYS  110 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEEEEEHHHHH--HHHHSSSC--CCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCEEEEEEhhHhh--hhhccccc--cccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEE
Confidence            6899999999999999987777776544221  0000 000  011111223445 999999  99999998 8899999


Q ss_pred             EeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEE
Q 015490          194 FKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIA  273 (406)
Q Consensus       194 wd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  273 (406)
                      ||+.+.........+...+.++.+.+.  .+++++.||.+.+||+.++....     ....+.+++|+|+|.        
T Consensus       111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-----~~~~Vs~v~WSpkG~--------  175 (388)
T 1xip_A          111 LDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-----LAQNVTSFDVTNSQL--------  175 (388)
T ss_dssp             EESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-----EEESEEEEEECSSEE--------
T ss_pred             EEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-----ccCCceEEEEcCCce--------
Confidence            999877665556666667888887654  38889999999999999877643     234689999999982        


Q ss_pred             EEcCCCcEEEEEeCCCceE--EEEe------e---ecCCCeEEEEEcCCCCEEEEE
Q 015490          274 AITDRGASIVTWNTTTWKR--IRTK------Q---VVREPVSSFNVSADGKLLAVG  318 (406)
Q Consensus       274 ~~~~~~~~i~~~d~~~~~~--~~~~------~---~~~~~i~~~~~sp~~~~l~~~  318 (406)
                      +.+..||.+++|+......  ..++      .   .|...|.+++|.+++.++++-
T Consensus       176 ~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          176 AVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            2345689999998887765  4555      2   256789999999999988873

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.47  E-value=9.9e-13  Score=118.36  Aligned_cols=174  Identities=14%  Similarity=0.065  Sum_probs=127.3

Q ss_pred             cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc---------e-EeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEc
Q 015490          169 QQLALTFDSEGTIFAAGSENGNLRVFKWPSLE---------I-ILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDL  238 (406)
Q Consensus       169 ~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~---------~-~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~  238 (406)
                      .+..+++++...++++|+.+ .+.+|++...+         . ......... |+.++|  |+++|+++ .++.|++||+
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv  113 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL  113 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence            68899999999999999987 56669875433         1 111223445 999999  89999988 7899999999


Q ss_pred             CCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEE
Q 015490          239 ASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVG  318 (406)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~  318 (406)
                      ++.........+ ...+..+.+.+.  .      ++....+|.|.+||+.++....    +...|++++|||+|  ++.|
T Consensus       114 ~sl~~~~~~~~~-~~~v~~i~~~~p--~------~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg  178 (388)
T 1xip_A          114 EELSEFRTVTSF-EKPVFQLKNVNN--T------LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVL  178 (388)
T ss_dssp             SSTTCEEEEEEC-SSCEEEEEECSS--E------EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEE
T ss_pred             hhhhccCcccee-ecceeeEEecCC--C------EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEE
Confidence            876544333332 233556655543  2      2333578999999999876543    23479999999999  7789


Q ss_pred             eCCCcEEEEECCCceE--EEEeec--------ccccceEEEEEcCCCCeEEEEE
Q 015490          319 TASGDISIIDSSSLQV--RTAVKK--------AHLGIVTALAFSYDSRALVSAS  362 (406)
Q Consensus       319 ~~dg~i~i~d~~~~~~--~~~~~~--------~~~~~v~~~~~sp~~~~l~s~s  362 (406)
                      ..||++++|+......  ...+..        +|...|.++.|.+++.++++-+
T Consensus       179 ~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          179 LKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             EcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            9999999999887775  445521        3678899999999999888643

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.46  E-value=5.5e-12  Score=113.22  Aligned_cols=224  Identities=9%  Similarity=-0.067  Sum_probs=141.1

Q ss_pred             EEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEee----------CCCeEEEEeCCCcceEeeee
Q 015490          137 RLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGS----------ENGNLRVFKWPSLEIILNES  206 (406)
Q Consensus       137 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~----------~dg~i~vwd~~~~~~~~~~~  206 (406)
                      +++.+|..+.+.+..+..           +..+  .+.++||+++++++.          .++.|.+||..+++.+..+.
T Consensus        47 ~vsvID~~t~~v~~~i~v-----------G~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~  113 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLG-----------AFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIE  113 (368)
T ss_dssp             EEEEEETTTTEEEEEEEE-----------CTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEE
T ss_pred             eEEEEECCCCeEEEEEeC-----------CCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEE
Confidence            667788776655554433           2334  799999999888886          36899999999999988875


Q ss_pred             ccC-------CceeEEEEccCCCEEEEEeC--CCCEEE--EEcCCCeeeeecccCCc------ceEEEEEEEcCCCC---
Q 015490          207 EAH-------ASVKDLSFSPDGKFLVSLGN--RGPGRV--WDLASSAVATPLAKEND------ELFASCRFSPLNNE---  266 (406)
Q Consensus       207 ~~~-------~~i~~~~~s~~~~~l~s~s~--d~~i~i--wd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~---  266 (406)
                      .+.       .....++++|||++++++..  +..+.+  +|..+   +..+.....      ..-..+.++++++.   
T Consensus       114 v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~v  190 (368)
T 1mda_H          114 LPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAAS  190 (368)
T ss_dssp             ETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEE
T ss_pred             CCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEE
Confidence            431       23578999999999998874  456888  88866   222221100      00001122222211   


Q ss_pred             -------------------------------ceEEEEEEEcCCCcEEEEEeCCCce--EEEEeeec----------CCCe
Q 015490          267 -------------------------------DYVLYIAAITDRGASIVTWNTTTWK--RIRTKQVV----------REPV  303 (406)
Q Consensus       267 -------------------------------~~~l~~~~~~~~~~~i~~~d~~~~~--~~~~~~~~----------~~~i  303 (406)
                                                     ...+ + .. +. +.+.+.|..+..  .+..+...          ....
T Consensus       191 d~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~-~-~v-s~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~  266 (368)
T 1mda_H          191 DLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML-V-WA-VA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGF  266 (368)
T ss_dssp             ECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEE-E-EC-BS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSS
T ss_pred             ECccccccCCeEEEEeeeeeeCCCCccccccCCEE-E-EE-cC-CEEEEEECCCCcceEEEEEEeccccccccccccCcc
Confidence                                           0000 0 00 11 455666664321  22211110          0111


Q ss_pred             EEEEEcCCCCEEEEEeC-C--------CcEEEEECCCceEEEEeecccccceEEEEEcCCCCe-EEEEE-CCCcEEEEEe
Q 015490          304 SSFNVSADGKLLAVGTA-S--------GDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRA-LVSAS-MDSSVRVTVI  372 (406)
Q Consensus       304 ~~~~~sp~~~~l~~~~~-d--------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~s~s-~dg~i~iw~~  372 (406)
                      ..+.++||++.++++.. .        +.+.++|+.+.+.+..+..+  ....+++|+|||++ +++.. .++.|.++|+
T Consensus       267 ~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg--~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~  344 (368)
T 1mda_H          267 QMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG--HDSDAIIAAQDGASDNYANSAGTEVLDIYDA  344 (368)
T ss_dssp             SCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred             eeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC--CCcceEEECCCCCEEEEEccCCCCeEEEEEC
Confidence            22689999998887643 2        35679999999999888632  36889999999985 56666 5999999999


Q ss_pred             cCCcCCCCch
Q 015490          373 EDKKKSGGLN  382 (406)
Q Consensus       373 ~~~~~~~~~~  382 (406)
                      .+.+.+..++
T Consensus       345 ~t~kvv~~I~  354 (368)
T 1mda_H          345 ASDQDQSSVE  354 (368)
T ss_dssp             SSCEEEEECC
T ss_pred             CCCcEEEEEE
Confidence            9998776654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.42  E-value=1.1e-10  Score=104.81  Aligned_cols=242  Identities=13%  Similarity=0.116  Sum_probs=153.8

Q ss_pred             CCceEEEEccCCCeEEEEe---cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeC---
Q 015490          114 DLPYRMAIHPHGDGIICAL---QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE---  187 (406)
Q Consensus       114 ~~v~~~~~sp~~~~l~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~---  187 (406)
                      ..+..++++|+|+.+++..   ++..+||.++  +++ ...+..   .. .....+-..+..++++++|+++++-..   
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~--~g~-~~~~p~---~~-~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~   89 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT--QDG-LIPFPP---QS-GNAIITFDTVLGIKSDGNGIVWMLDNGNQS   89 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE--TTE-EEESCC---CC-SSCCCCCSCEEEEEECSSSEEEEEECHHHH
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEEC--CCC-eecCCC---cc-cCcccceeEeeEEEEcCCCcEEEEcCCCCc
Confidence            6789999999999877753   2336788877  232 221110   00 001123367899999999987766443   


Q ss_pred             --CCeEEEEeCCCcceEeeeecc------CCceeEEEEccCCCEE-EEEe---CCCCEEEEEcCCCeeeeecccCC----
Q 015490          188 --NGNLRVFKWPSLEIILNESEA------HASVKDLSFSPDGKFL-VSLG---NRGPGRVWDLASSAVATPLAKEN----  251 (406)
Q Consensus       188 --dg~i~vwd~~~~~~~~~~~~~------~~~i~~~~~s~~~~~l-~s~s---~d~~i~iwd~~~~~~~~~~~~~~----  251 (406)
                        ++.|.+||+.+++.+..+...      ...+..+++++++..+ ++..   .++.|.+||+.+++....+..+.    
T Consensus        90 ~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~  169 (343)
T 2qe8_A           90 KSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAP  169 (343)
T ss_dssp             TSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSC
T ss_pred             CCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccc
Confidence              578999999988866555322      1256899999865554 4444   57899999998877655442210    


Q ss_pred             ------------------------cceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC---ce-----EEE--Eee
Q 015490          252 ------------------------DELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT---WK-----RIR--TKQ  297 (406)
Q Consensus       252 ------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~---~~-----~~~--~~~  297 (406)
                                              ......++|+|+++.   +|+.  ......++.++...   +.     ...  ...
T Consensus       170 ~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~---ly~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  244 (343)
T 2qe8_A          170 EDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEW---LYLS--PMHSTSMYRIKSADLSNLQLTDAELGSKIERY  244 (343)
T ss_dssp             CSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCE---EEEE--ESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE
T ss_pred             cccceeECCEEEEeccCCCceeceecccceeEeccCCCE---EEEE--eCCCCeEEEEEHHHhcCCCCChhhhhcceEec
Confidence                                    012577999999874   3333  23344666665421   00     000  111


Q ss_pred             ecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcE
Q 015490          298 VVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSV  367 (406)
Q Consensus       298 ~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i  367 (406)
                      ++......++++++|+++++...++.|.+||..+++........+...+.+++|.++++++++.+..+.+
T Consensus       245 g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~  314 (343)
T 2qe8_A          245 SEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHS  314 (343)
T ss_dssp             EECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred             ccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccc
Confidence            2333456799999999888888899999999855664433321234568899999999888877644433

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.39  E-value=5.1e-11  Score=106.83  Aligned_cols=240  Identities=19%  Similarity=0.092  Sum_probs=157.5

Q ss_pred             EEEccCCCeEEEEecC----CeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEee--------
Q 015490          119 MAIHPHGDGIICALQN----SCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGS--------  186 (406)
Q Consensus       119 ~~~sp~~~~l~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--------  186 (406)
                      ....|+++.+++...+    .-.|+.+|..+.+.+..+..           +..+ . ++++|||+++++++        
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~v-----------G~~P-~-va~spDG~~lyVan~~~~r~~~  104 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG-----------GFLP-N-PVVADDGSFIAHASTVFSRIAR  104 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE-----------CSSC-E-EEECTTSSCEEEEEEEEEETTE
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEEC-----------CCCC-c-EEECCCCCEEEEEccccccccc
Confidence            4557899988888632    55888888876655444332           2233 4 99999999888775        


Q ss_pred             --CCCeEEEEeCCCcceEeeeeccC-------CceeEEEEccCCCEEEEEeC--CCCEEEEEcCCCeeeeecccCCcceE
Q 015490          187 --ENGNLRVFKWPSLEIILNESEAH-------ASVKDLSFSPDGKFLVSLGN--RGPGRVWDLASSAVATPLAKENDELF  255 (406)
Q Consensus       187 --~dg~i~vwd~~~~~~~~~~~~~~-------~~i~~~~~s~~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~~~~~~~  255 (406)
                        .++.|.+||..+++.+..+.-..       .....++++|||++++++..  ++.|.++|+.+++.+.++.....   
T Consensus       105 G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---  181 (386)
T 3sjl_D          105 GERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---  181 (386)
T ss_dssp             EEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---
T ss_pred             CCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---
Confidence              36789999999999887765322       24578999999999998874  68899999999999888864321   


Q ss_pred             EEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC-ceEEEEeeec----CCCeE-EEEEc-CCCCEEEEEeCCCcEEEEE
Q 015490          256 ASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT-WKRIRTKQVV----REPVS-SFNVS-ADGKLLAVGTASGDISIID  328 (406)
Q Consensus       256 ~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~----~~~i~-~~~~s-p~~~~l~~~~~dg~i~i~d  328 (406)
                        ....|.+..   .|+  ..+.||.+.+.++.+ ++........    ..++. ...|. ++|++++ .+.+|.|++.|
T Consensus       182 --~~~~P~g~~---~~~--~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d  253 (386)
T 3sjl_D          182 --YHIFPTAPD---TFF--MHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQID  253 (386)
T ss_dssp             --EEEEEEETT---EEE--EEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEE
T ss_pred             --ceeecCCCc---eeE--EECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEE
Confidence              122344433   122  234577788888865 4543222111    11221 23553 6776555 56689999999


Q ss_pred             CCCce--EEEEee---------cccccceEEEEEcCCCCeEEEEEC----------CCcEEEEEecCCcCCCCch
Q 015490          329 SSSLQ--VRTAVK---------KAHLGIVTALAFSYDSRALVSASM----------DSSVRVTVIEDKKKSGGLN  382 (406)
Q Consensus       329 ~~~~~--~~~~~~---------~~~~~~v~~~~~sp~~~~l~s~s~----------dg~i~iw~~~~~~~~~~~~  382 (406)
                      +.+..  ....+.         ....+....++++++++.++....          .+.|.+.|+.+++.+..++
T Consensus       254 ~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~  328 (386)
T 3sjl_D          254 LSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE  328 (386)
T ss_dssp             CTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE
T ss_pred             CCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE
Confidence            97654  332221         001223445778999888877643          2579999999998877654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.38  E-value=1.4e-10  Score=102.58  Aligned_cols=202  Identities=14%  Similarity=0.096  Sum_probs=137.1

Q ss_pred             CcEEEEEECCCCCEEEE-------eeCCCeEEEEeCCCcceEeeee----ccCCceeEEEEccC-CCEEEEEeCCCCEEE
Q 015490          168 GQQLALTFDSEGTIFAA-------GSENGNLRVFKWPSLEIILNES----EAHASVKDLSFSPD-GKFLVSLGNRGPGRV  235 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~-------~~~dg~i~vwd~~~~~~~~~~~----~~~~~i~~~~~s~~-~~~l~s~s~d~~i~i  235 (406)
                      ....+++|+++|+++++       +..++.|.+||..+++......    ++...+.+++++++ +++++ ++..+.|.+
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~~~~~~l~~   96 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-ADMRLGLLV   96 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE-EETTTEEEE
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE-EECCCCEEE
Confidence            45678999999988888       6778999999988776543221    13346889999999 66444 444457999


Q ss_pred             EEcCCCeeeee-ccc---CCcceEEEEEEEcCCCCceEEEEEEEcCC--------------CcEEEEEeCCCceEEEEee
Q 015490          236 WDLASSAVATP-LAK---ENDELFASCRFSPLNNEDYVLYIAAITDR--------------GASIVTWNTTTWKRIRTKQ  297 (406)
Q Consensus       236 wd~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------------~~~i~~~d~~~~~~~~~~~  297 (406)
                      ||.. ++.... ...   .....+..++++++++    ++ ++....              .+.|..+|.. ++..... 
T Consensus        97 ~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~----l~-v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-  168 (314)
T 1pjx_A           97 VQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN----LW-ITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-  168 (314)
T ss_dssp             EETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC----EE-EEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-
T ss_pred             EeCC-CCEEEEEeccCCCccccCCcCEEECCCCC----EE-EEecCcccccccccccccCCCCeEEEECCC-CCEEEec-
Confidence            9998 665433 221   1123467899999886    23 232222              2678888876 5443332 


Q ss_pred             ecCCCeEEEEEc----CCCCEEEEE-eCCCcEEEEECC-CceE-----EEEeecccc-cceEEEEEcCCCCeEEEEECCC
Q 015490          298 VVREPVSSFNVS----ADGKLLAVG-TASGDISIIDSS-SLQV-----RTAVKKAHL-GIVTALAFSYDSRALVSASMDS  365 (406)
Q Consensus       298 ~~~~~i~~~~~s----p~~~~l~~~-~~dg~i~i~d~~-~~~~-----~~~~~~~~~-~~v~~~~~sp~~~~l~s~s~dg  365 (406)
                      .+......++++    |+++.|+++ ..++.|.+||.. +++.     ...+. .+. ..+..++++++|+++++...++
T Consensus       169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~~~~~  247 (314)
T 1pjx_A          169 TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP-GTHEGGADGMDFDEDNNLLVANWGSS  247 (314)
T ss_dssp             EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC-CCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred             cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECC-CCCCCCCCceEECCCCCEEEEEcCCC
Confidence            233456889999    999766655 457899999976 4432     12221 233 5678999999999888887889


Q ss_pred             cEEEEEecCCcCCC
Q 015490          366 SVRVTVIEDKKKSG  379 (406)
Q Consensus       366 ~i~iw~~~~~~~~~  379 (406)
                      .|.+||.++++.+.
T Consensus       248 ~i~~~d~~~g~~~~  261 (314)
T 1pjx_A          248 HIEVFGPDGGQPKM  261 (314)
T ss_dssp             EEEEECTTCBSCSE
T ss_pred             EEEEEcCCCCcEeE
Confidence            99999988666543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.38  E-value=2.7e-10  Score=100.11  Aligned_cols=203  Identities=8%  Similarity=0.065  Sum_probs=136.2

Q ss_pred             cEEEEEECCC-CCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeec
Q 015490          169 QQLALTFDSE-GTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPL  247 (406)
Q Consensus       169 ~v~~~~~s~~-g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  247 (406)
                      -..+..|+++ +.++++...++.|+.||..+++.. .+ .....+.+++++++|+++++ . ++.|.+||..+++.....
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~   89 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLA   89 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEE
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEE
Confidence            3457899995 456666677899999999877653 22 23457899999999995544 4 568999999887654322


Q ss_pred             cc---CCcceEEEEEEEcCCCCceEEEEEEEcC---------CCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEE
Q 015490          248 AK---ENDELFASCRFSPLNNEDYVLYIAAITD---------RGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLL  315 (406)
Q Consensus       248 ~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l  315 (406)
                      ..   .....+..++++|+++    +++.....         ..+.|+.+|.. ++... +.........++|+|+++.|
T Consensus        90 ~~~~~~~~~~~~di~~d~dG~----l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~spdg~~l  163 (297)
T 3g4e_A           90 TVDNDKKNNRFNDGKVDPAGR----YFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWSLDHKIF  163 (297)
T ss_dssp             ECCTTCSSEEEEEEEECTTSC----EEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEECTTSCEE
T ss_pred             ecCCCCCCCCCCCEEECCCCC----EEEecCCcccccccccCCCcEEEEEECC-CCEEE-EeeccccccceEEcCCCCEE
Confidence            21   1234577899999987    23332221         33567777764 33322 22222446889999999977


Q ss_pred             EEE-eCCCcEEEEEC--CCceEE--EEee--cccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490          316 AVG-TASGDISIIDS--SSLQVR--TAVK--KAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       316 ~~~-~~dg~i~i~d~--~~~~~~--~~~~--~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~  381 (406)
                      +++ +.++.|.+|++  .++...  ..+.  ..+.+.+..++++++|++.++...++.|..||..+++.+..+
T Consensus       164 yv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i  236 (297)
T 3g4e_A          164 YYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTV  236 (297)
T ss_dssp             EEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEE
T ss_pred             EEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEE
Confidence            655 44788999987  455432  1121  123456789999999998888777888999999888765544

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.38  E-value=3e-11  Score=110.25  Aligned_cols=237  Identities=15%  Similarity=0.071  Sum_probs=156.1

Q ss_pred             cCCCeEEEEecCC----eEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEee----------CC
Q 015490          123 PHGDGIICALQNS----CRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGS----------EN  188 (406)
Q Consensus       123 p~~~~l~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~----------~d  188 (406)
                      |+++.++++..+.    -.|..+|..+.+.+..+..           +..+  .+.++|||++++++.          .+
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v-----------G~~P--gia~SpDgk~lyVan~~~~~~~~G~~~  148 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG-----------GFLP--HPVAAEDGSFFAQASTVFERIARGKRT  148 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE-----------CSSC--EEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC-----------CCCC--ceEECCCCCEEEEEeccccccccCCCC
Confidence            5677777765322    5777788776655544433           2233  799999999888876          36


Q ss_pred             CeEEEEeCCCcceEeeeecc-------CCceeEEEEccCCCEEEEEeC--CCCEEEEEcCCCeeeeecccCCcceEEEEE
Q 015490          189 GNLRVFKWPSLEIILNESEA-------HASVKDLSFSPDGKFLVSLGN--RGPGRVWDLASSAVATPLAKENDELFASCR  259 (406)
Q Consensus       189 g~i~vwd~~~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  259 (406)
                      +.|.++|..+++.+..+.-.       ......+.++|||++++++..  ++.|.+.|+.+++.+..+.....     ..
T Consensus       149 ~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~-----~~  223 (426)
T 3c75_H          149 DYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC-----YH  223 (426)
T ss_dssp             EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-----EE
T ss_pred             CEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc-----ee
Confidence            78999999999888776532       124567999999999998874  57899999999999888765321     33


Q ss_pred             EEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEe----eecCCCe-EEEEEcCCCCEEEEEeCCCcEEEEECCCceE
Q 015490          260 FSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTK----QVVREPV-SSFNVSADGKLLAVGTASGDISIIDSSSLQV  334 (406)
Q Consensus       260 ~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~----~~~~~~i-~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~  334 (406)
                      ..|++..   .|+..  +.++.+.+.+..+++.....    .....++ ..+.+++++..++..+..+.|.+.|+.....
T Consensus       224 ~~p~g~~---~~v~~--~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~  298 (426)
T 3c75_H          224 IFPASPT---VFYMN--CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGA  298 (426)
T ss_dssp             EEEEETT---EEEEE--ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCE
T ss_pred             eccCCCc---EEEEE--cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCce
Confidence            4455543   22222  34667777777555544221    1111111 2356789998888888889999999875442


Q ss_pred             E--EEeecc---------cccceEEEEEcCCCCeEEEEEC----------CCcEEEEEecCCcCCCCch
Q 015490          335 R--TAVKKA---------HLGIVTALAFSYDSRALVSASM----------DSSVRVTVIEDKKKSGGLN  382 (406)
Q Consensus       335 ~--~~~~~~---------~~~~v~~~~~sp~~~~l~s~s~----------dg~i~iw~~~~~~~~~~~~  382 (406)
                      .  ..+...         .......++++|+++.+++...          ++.|.+.|+.+.+.+..++
T Consensus       299 ~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~  367 (426)
T 3c75_H          299 TFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIE  367 (426)
T ss_dssp             EECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE
T ss_pred             EEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEE
Confidence            2  111100         0111223789999887766542          3579999999998877664

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.36  E-value=2.2e-11  Score=119.91  Aligned_cols=200  Identities=15%  Similarity=0.093  Sum_probs=131.6

Q ss_pred             CcEEEEEECCCCCEEEEe-----eCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCC----------
Q 015490          168 GQQLALTFDSEGTIFAAG-----SENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGP----------  232 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~-----~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~----------  232 (406)
                      ..+..++|||||++||.+     +...+|++||+.+++.+..... ......++|+ |++.|+.++.+..          
T Consensus       129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~-~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~  206 (693)
T 3iuj_A          129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLK-DVKFSGISWL-GNEGFFYSSYDKPDGSELSARTD  206 (693)
T ss_dssp             CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEE-EEESCCCEEE-TTTEEEEEESSCCC-------CC
T ss_pred             EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccC-CceeccEEEe-CCCEEEEEEecCcccccccccCC
Confidence            457788999999999853     3345799999999986543211 1123678999 9999999987743          


Q ss_pred             ---EEEEEcCCCee--eeecccC--CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCce-EEEEeeecCCCeE
Q 015490          233 ---GRVWDLASSAV--ATPLAKE--NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK-RIRTKQVVREPVS  304 (406)
Q Consensus       233 ---i~iwd~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~i~  304 (406)
                         |++|++.++..  ...+...  +......+.|+|+++.  +++....+.....|+++|+.++. ....+..+.....
T Consensus       207 ~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~  284 (693)
T 3iuj_A          207 QHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRF--LLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADV  284 (693)
T ss_dssp             CCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCE--EEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCE
T ss_pred             CcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCE--EEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceE
Confidence               99999987653  2222221  1234568899999985  22222223344699999998763 3445555555444


Q ss_pred             EEEEcCCCCEEEEEeC-C---CcEEEEECCCceE--EEEeecccccceEEEEEcCCCCeEEEEECCC---cEEEEEecCC
Q 015490          305 SFNVSADGKLLAVGTA-S---GDISIIDSSSLQV--RTAVKKAHLGIVTALAFSYDSRALVSASMDS---SVRVTVIEDK  375 (406)
Q Consensus       305 ~~~~sp~~~~l~~~~~-d---g~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg---~i~iw~~~~~  375 (406)
                      .. ++++|..|+..+. +   +.|..+|+.++..  ...+. .|...+.  .|++++++|+....++   .|++|++..+
T Consensus       285 ~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~  360 (693)
T 3iuj_A          285 SL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI-PERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK  360 (693)
T ss_dssp             EE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE-CCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred             EE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe-cCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence            54 6677776665544 3   5799999987654  23333 4555554  8999998887666544   6888887643

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.35  E-value=1.6e-10  Score=106.10  Aligned_cols=198  Identities=11%  Similarity=0.036  Sum_probs=135.5

Q ss_pred             CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCC--CEEEEEcCCCeeee
Q 015490          168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRG--PGRVWDLASSAVAT  245 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~--~i~iwd~~~~~~~~  245 (406)
                      .....++|+++++++++...++.|++||..++........ ..... ++|+++++.|+++..++  .|.+++...+....
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~  208 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT  208 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence            4578999999999888877789999999987766544333 33334 99999999999888766  78888887654433


Q ss_pred             ec---ccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEE----eeecCCCe-E-EEEEcCC-CCEE
Q 015490          246 PL---AKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRT----KQVVREPV-S-SFNVSAD-GKLL  315 (406)
Q Consensus       246 ~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~----~~~~~~~i-~-~~~~sp~-~~~l  315 (406)
                      .+   .......+.+++++|++..   +|+   ...++.|+.||..++.....    .......- . .++|+|+ +.++
T Consensus       209 ~~g~~~~~~~~~p~~iav~p~~g~---lyv---~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ly  282 (409)
T 3hrp_A          209 RIGQLGSTFSGKIGAVALDETEEW---LYF---VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFY  282 (409)
T ss_dssp             EEEECCTTSCSCCCBCEECTTSSE---EEE---ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEE
T ss_pred             EeeeccchhcCCcEEEEEeCCCCe---EEE---EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEE
Confidence            32   1112334567899995543   333   34578999999987653322    11111221 3 8999995 5555


Q ss_pred             EEEeCCCcEEEEECCCceEEEEeecccc---------------cceEEEEEcCCCCeEEEEE-CCCcEEEEEecCCc
Q 015490          316 AVGTASGDISIIDSSSLQVRTAVKKAHL---------------GIVTALAFSYDSRALVSAS-MDSSVRVTVIEDKK  376 (406)
Q Consensus       316 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------------~~v~~~~~sp~~~~l~s~s-~dg~i~iw~~~~~~  376 (406)
                      ++-..++.|+.|+....  ...+. ++.               .....++++|+|+++++-+ .+++|+.|++.+++
T Consensus       283 v~d~~~~~I~~~~~~g~--~~~~~-g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~  356 (409)
T 3hrp_A          283 MSDQNLSSVYKITPDGE--CEWFC-GSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY  356 (409)
T ss_dssp             EEETTTTEEEEECTTCC--EEEEE-ECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred             EEeCCCCEEEEEecCCC--EEEEE-eCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence            55555788999997643  22222 221               3478999999999878777 78999999976654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.31  E-value=5.6e-11  Score=111.02  Aligned_cols=232  Identities=10%  Similarity=0.047  Sum_probs=158.9

Q ss_pred             CCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEE-C-CCCCEEEEee---------------
Q 015490          124 HGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTF-D-SEGTIFAAGS---------------  186 (406)
Q Consensus       124 ~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s-~~g~~l~~~~---------------  186 (406)
                      ||+++++.....-+|..++..+.+....+          .+........+++ + |+++++++++               
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii----------~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~  169 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAIL----------EIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED  169 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEE----------ECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEE----------eCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccc
Confidence            88999987755557777887765543322          2223345778887 5 8999888874               


Q ss_pred             ---CCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCC--------------------------------
Q 015490          187 ---ENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRG--------------------------------  231 (406)
Q Consensus       187 ---~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~--------------------------------  231 (406)
                         .++.+.+.|.++.+...++.-.. ....++.+|||+++++++.+.                                
T Consensus       170 ~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~G  248 (595)
T 1fwx_A          170 VANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG  248 (595)
T ss_dssp             GGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred             ccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCC
Confidence               34689999999988887776433 457788999999999888543                                


Q ss_pred             ------CEEEEEcCC--Cee-eeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCce-----------
Q 015490          232 ------PGRVWDLAS--SAV-ATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK-----------  291 (406)
Q Consensus       232 ------~i~iwd~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~-----------  291 (406)
                            .|.+.|.++  ++. +..+...  ....++.++|++++     +++++..+..|.++|+.+.+           
T Consensus       249 k~~~i~~V~VID~~~~~~~~~~~~Ipvg--~~PhGv~~sPDGk~-----v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~  321 (595)
T 1fwx_A          249 DYQELNGVKVVDGRKEASSLFTRYIPIA--NNPHGCNMAPDKKH-----LCVAGKLSPTVTVLDVTRFDAVFYENADPRS  321 (595)
T ss_dssp             CSEEETTEEEEECSGGGCCSSEEEEEEE--SSCCCEEECTTSSE-----EEEECTTSSBEEEEEGGGHHHHHHSCCCGGG
T ss_pred             CeeEECcEEEEeCcccCCceeEEEEecC--CCceEEEEcCCCCE-----EEEeCCCCCeEEEEECcccccccccccCccc
Confidence                  356666665  333 3333322  12347899999995     77788889999999999753           


Q ss_pred             -EEEEeeecCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCC----------ceEEEEeecccccc-----eEEEEEcCC
Q 015490          292 -RIRTKQVVREPVSSFNVSADGKLLAVG-TASGDISIIDSSS----------LQVRTAVKKAHLGI-----VTALAFSYD  354 (406)
Q Consensus       292 -~~~~~~~~~~~i~~~~~sp~~~~l~~~-~~dg~i~i~d~~~----------~~~~~~~~~~~~~~-----v~~~~~sp~  354 (406)
                       ........ .....++|+|+| ++++. ..|++|.+||+.+          .+.+.++. .|-.+     -.++.++||
T Consensus       322 ~v~~~v~vG-~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kid-V~yqpGh~~~~~g~t~~~D  398 (595)
T 1fwx_A          322 AVVAEPELG-LGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLD-VHYQPGHLKTVMGETLDAT  398 (595)
T ss_dssp             GEEECCBCC-SCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEE-CSSCEEEEEETTTTSTTCC
T ss_pred             ceEEEcCCC-CCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEee-cccccccceeccceEeCCC
Confidence             34444433 456899999999 55554 4599999999977          55666665 34332     123356899


Q ss_pred             CCeEEEEEC---CCc----------EEEEEecCCc
Q 015490          355 SRALVSASM---DSS----------VRVTVIEDKK  376 (406)
Q Consensus       355 ~~~l~s~s~---dg~----------i~iw~~~~~~  376 (406)
                      |++|++...   |+-          -.++|+..++
T Consensus       399 Gk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          399 NDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             SSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             CCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence            999998753   332          1788885443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.30  E-value=2.3e-09  Score=95.47  Aligned_cols=195  Identities=13%  Similarity=0.008  Sum_probs=130.5

Q ss_pred             EEEEEECCCC-CEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecc
Q 015490          170 QLALTFDSEG-TIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLA  248 (406)
Q Consensus       170 v~~~~~s~~g-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  248 (406)
                      ..+..|+|++ .++++...++.|..||..+++... +. ....+.+++|+++|+++++. .+ .|.+||..+++......
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~  126 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAE  126 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEEC
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEee
Confidence            3567899975 566666678899999998775432 22 23578999999999876654 44 59999998877543222


Q ss_pred             c---CCcceEEEEEEEcCCCCceEEEEEEEcC----CCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEe-C
Q 015490          249 K---ENDELFASCRFSPLNNEDYVLYIAAITD----RGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGT-A  320 (406)
Q Consensus       249 ~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~  320 (406)
                      .   .....+..+.++|+++    +++.....    ..+.|+.+|  +++... +.........++|+|+++.++.+. .
T Consensus       127 ~~~~~~~~~~~~i~~d~~G~----l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~  199 (326)
T 2ghs_A          127 LESDLPGNRSNDGRMHPSGA----LWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTK  199 (326)
T ss_dssp             SSTTCTTEEEEEEEECTTSC----EEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETT
T ss_pred             CCCCCCCCCCCCEEECCCCC----EEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECC
Confidence            1   1234578899999987    23332221    246777777  444332 322334567899999999776654 4


Q ss_pred             CCcEEEEECC--Cc-eE-----EEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490          321 SGDISIIDSS--SL-QV-----RTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       321 dg~i~i~d~~--~~-~~-----~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      ++.|.+||+.  ++ ..     ...+. .....+..++++++|.++++...++.|.+|+. +++.
T Consensus       200 ~~~I~~~d~~~~~Gl~~~~~~~~~~~~-~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~  262 (326)
T 2ghs_A          200 VNRLMRVPLDARTGLPTGKAEVFIDST-GIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNH  262 (326)
T ss_dssp             TCEEEEEEBCTTTCCBSSCCEEEEECT-TSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCE
T ss_pred             CCEEEEEEcccccCCcccCceEEEECC-CCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCE
Confidence            6889999986  55 31     22221 23455788999999988877767788999987 4544

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.30  E-value=3.4e-09  Score=93.38  Aligned_cols=211  Identities=11%  Similarity=0.066  Sum_probs=130.4

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCc
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQ  169 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (406)
                      .++.++...      ....+..+...+..++++++|+.+++. .+.-.|+.++.. +. ...+...      ..-.....
T Consensus        68 ~i~~~~~~g------~~~~~~~~~~~~~gl~~d~dG~l~v~~-~~~~~v~~~~~~-g~-~~~~~~~------~~~~~~~~  132 (305)
T 3dr2_A           68 RVLGWREDG------TVDVLLDATAFTNGNAVDAQQRLVHCE-HGRRAITRSDAD-GQ-AHLLVGR------YAGKRLNS  132 (305)
T ss_dssp             EEEEEETTS------CEEEEEESCSCEEEEEECTTSCEEEEE-TTTTEEEEECTT-SC-EEEEECE------ETTEECSC
T ss_pred             EEEEEeCCC------CEEEEeCCCCccceeeECCCCCEEEEE-CCCCEEEEECCC-CC-EEEEEec------cCCCccCC
Confidence            456666633      234555667789999999999855544 333356666653 22 1111100      00011234


Q ss_pred             EEEEEECCCCCEEEE----eeC-------------CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCC--
Q 015490          170 QLALTFDSEGTIFAA----GSE-------------NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNR--  230 (406)
Q Consensus       170 v~~~~~s~~g~~l~~----~~~-------------dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d--  230 (406)
                      +..++++++|+++++    |..             .+.|..+|..+++.....  .......++|+||++.|+++...  
T Consensus       133 ~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~  210 (305)
T 3dr2_A          133 PNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQ  210 (305)
T ss_dssp             CCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC-
T ss_pred             CCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCc
Confidence            678999999998886    432             256777887666644332  33456889999999988777665  


Q ss_pred             ----CCEEEEEcCCCeee--eecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeE
Q 015490          231 ----GPGRVWDLASSAVA--TPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVS  304 (406)
Q Consensus       231 ----~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~  304 (406)
                          +.|.+|++..+...  ..+..........+++.++++-     +++  . .+.|.+||.. ++.+..+..+. .+.
T Consensus       211 ~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l-----wv~--~-~~gv~~~~~~-g~~~~~~~~~~-~~~  280 (305)
T 3dr2_A          211 GHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL-----WSS--S-GTGVCVFDSD-GQLLGHIPTPG-TAS  280 (305)
T ss_dssp             --CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE-----EEC--C-SSEEEEECTT-SCEEEEEECSS-CCC
T ss_pred             CCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE-----EEe--c-CCcEEEECCC-CCEEEEEECCC-cee
Confidence                68999998765411  1111111222346788888872     222  2 3459999984 56667776654 578


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEE
Q 015490          305 SFNVSADGKLLAVGTASGDISIID  328 (406)
Q Consensus       305 ~~~~sp~~~~l~~~~~dg~i~i~d  328 (406)
                      +++|+|+++.|++++.++ +..++
T Consensus       281 ~~~f~~d~~~L~it~~~~-l~~~~  303 (305)
T 3dr2_A          281 NCTFDQAQQRLFITGGPC-LWMLP  303 (305)
T ss_dssp             EEEECTTSCEEEEEETTE-EEEEE
T ss_pred             EEEEeCCCCEEEEEcCCe-EEEEE
Confidence            999999999898888764 44333

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.29  E-value=1.8e-10  Score=103.50  Aligned_cols=202  Identities=14%  Similarity=0.148  Sum_probs=133.7

Q ss_pred             CcEEEEEECCCCCEEEEee--CCCeEEEEeCCCcceEeeee-------ccCCceeEEEEccCCCEEEEEeC-----CCCE
Q 015490          168 GQQLALTFDSEGTIFAAGS--ENGNLRVFKWPSLEIILNES-------EAHASVKDLSFSPDGKFLVSLGN-----RGPG  233 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~~--~dg~i~vwd~~~~~~~~~~~-------~~~~~i~~~~~s~~~~~l~s~s~-----d~~i  233 (406)
                      ..+..++++++|+++++..  .++.++||.+.+++.. .+.       .+-..+..++++++++++++-..     ++.|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            5678999999999988853  2342455555455432 221       12237899999999876555433     5789


Q ss_pred             EEEEcCCCeeeeecccC-----CcceEEEEEEEcCCCCceEEEEEEEcC---CCcEEEEEeCCCceEEEEeeec------
Q 015490          234 RVWDLASSAVATPLAKE-----NDELFASCRFSPLNNEDYVLYIAAITD---RGASIVTWNTTTWKRIRTKQVV------  299 (406)
Q Consensus       234 ~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~i~~~d~~~~~~~~~~~~~------  299 (406)
                      .+||+.+++....+...     ....+..+++++++..   +|+  +..   .++.|.+||+.+++..+.+..|      
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~---~yv--td~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~  170 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNF---VYI--SDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPE  170 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTE---EEE--EECCSGGGCEEEEEETTTCCEEEECTTCTTTSCC
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecCCCE---EEE--EcCccCCCCeEEEEECCCCCEEEEecCCCccccc
Confidence            99999998876655432     1234568999987653   333  333   5789999999887766554321      


Q ss_pred             -----------------------CCCeEEEEEcCCCCEEEEEeCCC-cEEEEECC---Cce-----EEE--Eeecccccc
Q 015490          300 -----------------------REPVSSFNVSADGKLLAVGTASG-DISIIDSS---SLQ-----VRT--AVKKAHLGI  345 (406)
Q Consensus       300 -----------------------~~~i~~~~~sp~~~~l~~~~~dg-~i~i~d~~---~~~-----~~~--~~~~~~~~~  345 (406)
                                             ...+..++|+|+|+.|+++..++ .+..++..   .+.     ...  ... ++.+.
T Consensus       171 ~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-g~~g~  249 (343)
T 2qe8_A          171 DIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERY-SEKPI  249 (343)
T ss_dssp             SCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE-EECCS
T ss_pred             ccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEec-ccCCC
Confidence                                   02357899999999998887765 55555532   110     000  111 33445


Q ss_pred             eEEEEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490          346 VTALAFSYDSRALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       346 v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~  376 (406)
                      ...++++++|.++++...++.|.+||.++++
T Consensus       250 pdgia~d~~G~l~va~~~~~~V~~~d~~~G~  280 (343)
T 2qe8_A          250 CDGISIDKDHNIYVGDLAHSAIGVITSADRA  280 (343)
T ss_dssp             CSCEEECTTCCEEEEEGGGTEEEEEETTTTE
T ss_pred             CceEEECCCCCEEEEccCCCeEEEEECCCCC
Confidence            6789999999999988889999999984543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.28  E-value=3.6e-09  Score=89.87  Aligned_cols=206  Identities=11%  Similarity=0.127  Sum_probs=144.2

Q ss_pred             eeeecccccC--cEEEEEECCCCCEEEEeeC--CCeEEEEeCCCcceEeeeeccCC-ceeEEEEccCCCEEEEEe-CCCC
Q 015490          159 KVLSQLENVG--QQLALTFDSEGTIFAAGSE--NGNLRVFKWPSLEIILNESEAHA-SVKDLSFSPDGKFLVSLG-NRGP  232 (406)
Q Consensus       159 ~~~~~~~~~~--~v~~~~~s~~g~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~s~s-~d~~  232 (406)
                      +.+.++.+..  ....+.|++|+.++++.+.  ++.|+++|+.+++.+..+.-... ....+++.  +..|+.+. .++.
T Consensus        10 ~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~   87 (266)
T 2iwa_A           10 EVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNI   87 (266)
T ss_dssp             EEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSE
T ss_pred             eEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCE
Confidence            3455555553  3579999998765555443  57999999999998877653222 33345554  45555554 5789


Q ss_pred             EEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC-----CCeEEEE
Q 015490          233 GRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR-----EPVSSFN  307 (406)
Q Consensus       233 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-----~~i~~~~  307 (406)
                      +.++|..+.+.+.++......   ...++++++.   +|  ++. .++.|.++|..+.+.+..+....     ..+..+.
T Consensus        88 v~viD~~t~~v~~~i~~g~~~---g~glt~Dg~~---l~--vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele  158 (266)
T 2iwa_A           88 GFIYDRRTLSNIKNFTHQMKD---GWGLATDGKI---LY--GSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELE  158 (266)
T ss_dssp             EEEEETTTTEEEEEEECCSSS---CCEEEECSSS---EE--EEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred             EEEEECCCCcEEEEEECCCCC---eEEEEECCCE---EE--EEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEE
Confidence            999999999998888644111   2446678876   32  333 57899999999998888776432     2367788


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCceEEEEeecc-c-----------ccceEEEEEcCCCCe-EEEEECCCcEEEEEecC
Q 015490          308 VSADGKLLAVGTASGDISIIDSSSLQVRTAVKKA-H-----------LGIVTALAFSYDSRA-LVSASMDSSVRVTVIED  374 (406)
Q Consensus       308 ~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~-----------~~~v~~~~~sp~~~~-l~s~s~dg~i~iw~~~~  374 (406)
                      |. +|+..+....++.|.+.|..+++.+..+..+ .           ......++|+|+++. ++++...++|.+-++..
T Consensus       159 ~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          159 YI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             EE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             EE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            88 6754444445789999999999999888632 1           024589999999765 55666788999999977


Q ss_pred             Cc
Q 015490          375 KK  376 (406)
Q Consensus       375 ~~  376 (406)
                      .+
T Consensus       238 ~~  239 (266)
T 2iwa_A          238 VR  239 (266)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.27  E-value=7.9e-13  Score=119.96  Aligned_cols=185  Identities=15%  Similarity=0.023  Sum_probs=106.0

Q ss_pred             CCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEE-
Q 015490          178 EGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFA-  256 (406)
Q Consensus       178 ~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~-  256 (406)
                      ++..+++++.||.|+.||..+|+.+..+..  ..+.+..+..++..+++++.|+.|+.||.++|+.+..+..+....+. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            567899999999999999999998877765  44555555667777887889999999999988876555432111110 


Q ss_pred             EEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEE
Q 015490          257 SCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRT  336 (406)
Q Consensus       257 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~  336 (406)
                      ...+..++.       +..++.++.|+.||..+++.+..+..+.    ...++|++..+++++.++.|+.||.++++.+.
T Consensus        86 sp~~~~~~~-------v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W  154 (369)
T 2hz6_A           86 SPCRSSDGI-------LYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRW  154 (369)
T ss_dssp             CSCC------------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred             CceEecCCE-------EEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEE
Confidence            011111221       2334568899999999999887776543    23456788899999999999999999998766


Q ss_pred             EeecccccceEEEEEcCCC---CeEEEEECCCcEEEEEecCCcCC
Q 015490          337 AVKKAHLGIVTALAFSYDS---RALVSASMDSSVRVTVIEDKKKS  378 (406)
Q Consensus       337 ~~~~~~~~~v~~~~~sp~~---~~l~s~s~dg~i~iw~~~~~~~~  378 (406)
                      .+. .+.  .....++++.   ..+++++.||.|+.||..+++.+
T Consensus       155 ~~~-~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~  196 (369)
T 2hz6_A          155 NAT-YFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVL  196 (369)
T ss_dssp             EEE-EEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEE
T ss_pred             eEe-ccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEE
Confidence            553 111  1223334432   45777889999999999888753

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.27  E-value=2.6e-09  Score=95.86  Aligned_cols=244  Identities=9%  Similarity=-0.060  Sum_probs=146.2

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEec---------CCeEEEEEecccccceeecceecccee
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQ---------NSCRLFEWDEVENTEIRRLGVKISEKV  160 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~---------~~~~i~~~~~~~~~~~~~~~~~~~~~~  160 (406)
                      .+..+|..+.    +.+.++.....+  .+.++||+++++++..         .+-.|..+|..+.+....+.+....+ 
T Consensus        47 ~vsvID~~t~----~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~-  119 (368)
T 1mda_H           47 ENWVSCAGCG----VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR-  119 (368)
T ss_dssp             EEEEEETTTT----EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS-
T ss_pred             eEEEEECCCC----eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc-
Confidence            5666777663    355666555555  7999999999988851         23467778887776666554310000 


Q ss_pred             eecccccCcEEEEEECCCCCEEEEeeC--CCeEEE--EeCCCcceEeeeeccC------------------CceeEEE--
Q 015490          161 LSQLENVGQQLALTFDSEGTIFAAGSE--NGNLRV--FKWPSLEIILNESEAH------------------ASVKDLS--  216 (406)
Q Consensus       161 ~~~~~~~~~v~~~~~s~~g~~l~~~~~--dg~i~v--wd~~~~~~~~~~~~~~------------------~~i~~~~--  216 (406)
                      .  . .......++++|||++++++..  +..+.+  +|..+   +..+....                  +.+..+.  
T Consensus       120 ~--~-~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~  193 (368)
T 1mda_H          120 F--S-VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLA  193 (368)
T ss_dssp             C--C-BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECC
T ss_pred             c--c-cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECc
Confidence            0  0 0123456899999999998864  467888  88865   11111000                  0000000  


Q ss_pred             ------------------------EccCCCEEEEEeCCCCEEEEEcCCCe--eeeecccC------Ccce---EEEEEEE
Q 015490          217 ------------------------FSPDGKFLVSLGNRGPGRVWDLASSA--VATPLAKE------NDEL---FASCRFS  261 (406)
Q Consensus       217 ------------------------~s~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~~------~~~~---~~~~~~~  261 (406)
                                              .++++..++..+. +.+.+.|..+..  ....+...      ....   ...++++
T Consensus       194 ~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s  272 (368)
T 1mda_H          194 AAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL  272 (368)
T ss_dssp             SSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEE
T ss_pred             cccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEc
Confidence                                    0333344444444 667777775432  22222111      0101   1126799


Q ss_pred             cCCCCceEEEEEEEcC-C-----CcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCE-EEEEe-CCCcEEEEECCCce
Q 015490          262 PLNNEDYVLYIAAITD-R-----GASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKL-LAVGT-ASGDISIIDSSSLQ  333 (406)
Q Consensus       262 ~~~~~~~~l~~~~~~~-~-----~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~-l~~~~-~dg~i~i~d~~~~~  333 (406)
                      |++++   +|+..... .     ...+.++|+.+.+.+.++.... ....+.|+|||++ +++.. .++.|.++|+.+++
T Consensus       273 ~dg~~---lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k  348 (368)
T 1mda_H          273 KNTDG---IMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             TTTTE---EEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred             CCCCE---EEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence            99985   44433312 2     2345699999999988887654 5789999999984 55555 48999999999999


Q ss_pred             EEEEeecccccceEEEEEcC
Q 015490          334 VRTAVKKAHLGIVTALAFSY  353 (406)
Q Consensus       334 ~~~~~~~~~~~~v~~~~~sp  353 (406)
                      .+.++. .. .....+++.+
T Consensus       349 vv~~I~-vg-~~P~~i~~~~  366 (368)
T 1mda_H          349 DQSSVE-LD-KGPESLSVQN  366 (368)
T ss_dssp             EEEECC-CC-SCCCEEECCC
T ss_pred             EEEEEE-CC-CCCCEEEeec
Confidence            999886 33 3345565543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.26  E-value=2e-09  Score=105.29  Aligned_cols=245  Identities=9%  Similarity=0.029  Sum_probs=158.7

Q ss_pred             CCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEE-EEECCCCCEEEEeeC------CCeEEEEeC
Q 015490          124 HGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLA-LTFDSEGTIFAAGSE------NGNLRVFKW  196 (406)
Q Consensus       124 ~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~g~~l~~~~~------dg~i~vwd~  196 (406)
                      ++..+++++ ...+|+-+|..+++....+.......      ....+.+ ...  .+..+++++.      +|.|+.+|.
T Consensus       127 ~~~~v~v~~-~dg~l~alD~~tG~~~W~~~~~~~~~------~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~  197 (677)
T 1kb0_A          127 WKGKVYVGA-WDGRLIALDAATGKEVWHQNTFEGQK------GSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDA  197 (677)
T ss_dssp             ETTEEEEEC-TTSEEEEEETTTCCEEEEEETTTTCC------SSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEET
T ss_pred             ECCEEEEEc-CCCEEEEEECCCCCEEeeecCCcCcC------cCcccccCcEE--ECCEEEEEecccccCCCCEEEEEEC
Confidence            345566664 22367778888887776654310000      0001100 001  1334555543      689999999


Q ss_pred             CCcceEeeeeccCC--------------------------------ceeEEEEccCCCEEEEEeCCC-------------
Q 015490          197 PSLEIILNESEAHA--------------------------------SVKDLSFSPDGKFLVSLGNRG-------------  231 (406)
Q Consensus       197 ~~~~~~~~~~~~~~--------------------------------~i~~~~~s~~~~~l~s~s~d~-------------  231 (406)
                      .+|+.+..+.....                                ....++++|++..++.++.++             
T Consensus       198 ~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~g  277 (677)
T 1kb0_A          198 ETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGG  277 (677)
T ss_dssp             TTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCC
T ss_pred             CCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCC
Confidence            99998766543211                                113578889888888887654             


Q ss_pred             ------CEEEEEcCCCeeeeecccCCc--------ceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEee
Q 015490          232 ------PGRVWDLASSAVATPLAKEND--------ELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQ  297 (406)
Q Consensus       232 ------~i~iwd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~  297 (406)
                            .|..+|.++|+..-.+...+.        .....+....+++.   .-.++.++.+|.++++|..+++.+....
T Consensus       278 d~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~---~~~l~~~~~~G~l~~lD~~tG~~l~~~~  354 (677)
T 1kb0_A          278 DNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKP---RKVILHAPKNGFFFVLDRTNGKFISAKN  354 (677)
T ss_dssp             CCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEE---EEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred             CCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcE---eeEEEEECCCCEEEEEECCCCCEecccc
Confidence                  499999999998766543211        11112333345531   1145667889999999999999887665


Q ss_pred             ecCCC-----------e------------------------EEEEEcCCCCEEEEEeCC---------------------
Q 015490          298 VVREP-----------V------------------------SSFNVSADGKLLAVGTAS---------------------  321 (406)
Q Consensus       298 ~~~~~-----------i------------------------~~~~~sp~~~~l~~~~~d---------------------  321 (406)
                      .....           +                        ..++++|++.++++...+                     
T Consensus       355 ~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~  434 (677)
T 1kb0_A          355 FVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKP  434 (677)
T ss_dssp             SSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTST
T ss_pred             ccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccc
Confidence            32100           1                        156889988888876432                     


Q ss_pred             ----------------------CcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCC
Q 015490          322 ----------------------GDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSG  379 (406)
Q Consensus       322 ----------------------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~  379 (406)
                                            |.|..||+.+++.+-.+.  +..++....++.++..++.++.||.+++||.++++.+.
T Consensus       435 ~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~--~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw  512 (677)
T 1kb0_A          435 QSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE--HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLW  512 (677)
T ss_dssp             TGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE--ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC--CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceee
Confidence                                  789999999999988875  44455555667778888889999999999999999865


Q ss_pred             Cch
Q 015490          380 GLN  382 (406)
Q Consensus       380 ~~~  382 (406)
                      ++.
T Consensus       513 ~~~  515 (677)
T 1kb0_A          513 EAP  515 (677)
T ss_dssp             EEE
T ss_pred             eee
Confidence            553

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.23  E-value=6.5e-09  Score=101.84  Aligned_cols=243  Identities=11%  Similarity=0.072  Sum_probs=153.3

Q ss_pred             CCeEEEEecCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCCEEEEee------CCCeEEEEeCC
Q 015490          125 GDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIFAAGS------ENGNLRVFKWP  197 (406)
Q Consensus       125 ~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~------~dg~i~vwd~~  197 (406)
                      +..+++++ ...+|+-+|..+++............  ...... .++.     .++. +++++      .+|.|+.||..
T Consensus       121 ~g~v~v~~-~dg~l~AlDa~TG~~~W~~~~~~~~~--~~~~~~~sP~v-----~~g~-v~vg~~~~~~~~~g~v~a~D~~  191 (689)
T 1yiq_A          121 KGKVYVGV-LDGRLEAIDAKTGQRAWSVDTRADHK--RSYTITGAPRV-----VNGK-VVIGNGGAEFGVRGYVTAYDAE  191 (689)
T ss_dssp             TTEEEEEC-TTSEEEEEETTTCCEEEEEECCSCTT--SCCBCCSCCEE-----ETTE-EEECCBCTTTCCBCEEEEEETT
T ss_pred             CCEEEEEc-cCCEEEEEECCCCCEeeeecCcCCCC--CCccccCCcEE-----ECCE-EEEEeCCCccCCCCEEEEEECC
Confidence            45566664 22367778888887776654310000  000000 1111     1444 44443      37899999999


Q ss_pred             CcceEeeeeccC-------------------------------CceeEEEEccCCCEEEEEeCCCC--------------
Q 015490          198 SLEIILNESEAH-------------------------------ASVKDLSFSPDGKFLVSLGNRGP--------------  232 (406)
Q Consensus       198 ~~~~~~~~~~~~-------------------------------~~i~~~~~s~~~~~l~s~s~d~~--------------  232 (406)
                      +|+.+..+....                               .....++++|+..+++.++.++.              
T Consensus       192 tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~  271 (689)
T 1yiq_A          192 TGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDN  271 (689)
T ss_dssp             TCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCC
T ss_pred             CCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCc
Confidence            999876654210                               01125788898888998887753              


Q ss_pred             -----EEEEEcCCCeeeeecccCCc--------ceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeec
Q 015490          233 -----GRVWDLASSAVATPLAKEND--------ELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVV  299 (406)
Q Consensus       233 -----i~iwd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  299 (406)
                           |..+|.++|+.+-.+...+.        ..........+++.   .-+++.++.+|.++++|.++++.+......
T Consensus       272 ~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~---~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~  348 (689)
T 1yiq_A          272 LFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP---RKVLMQAPKNGFFYVIDRATGELLSAKGIV  348 (689)
T ss_dssp             TTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE---EEEEEECCTTSEEEEEETTTCCEEEEEESS
T ss_pred             eeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE---EEEEEEECCCCeEEEEECCCCCEecccccc
Confidence                 99999999998776543211        11111222234431   113556788999999999999987543221


Q ss_pred             C---------------------------------------CCeEEEEEcCCCCEEEEEeC--------------------
Q 015490          300 R---------------------------------------EPVSSFNVSADGKLLAVGTA--------------------  320 (406)
Q Consensus       300 ~---------------------------------------~~i~~~~~sp~~~~l~~~~~--------------------  320 (406)
                      .                                       .....++++|+..++++...                    
T Consensus       349 ~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~  428 (689)
T 1yiq_A          349 PQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKS  428 (689)
T ss_dssp             CCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTT
T ss_pred             ccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccccccccccc
Confidence            1                                       00123788898888877632                    


Q ss_pred             -------------------------CCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCC
Q 015490          321 -------------------------SGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDK  375 (406)
Q Consensus       321 -------------------------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~  375 (406)
                                               +|.|+.||+.+++.+-.+.  +..++..-.++..+.+++.++.||.|+.||.+++
T Consensus       429 ~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~--~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG  506 (689)
T 1yiq_A          429 MYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVP--YVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTG  506 (689)
T ss_dssp             SCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEE--ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred             ccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEcc--CCCCccCccceECCCEEEEECCCCcEEEEECCCC
Confidence                                     3779999999999988875  3334444456667888999999999999999999


Q ss_pred             cCCCCc
Q 015490          376 KKSGGL  381 (406)
Q Consensus       376 ~~~~~~  381 (406)
                      +.+-++
T Consensus       507 ~~lw~~  512 (689)
T 1yiq_A          507 EKLWEQ  512 (689)
T ss_dssp             CEEEEE
T ss_pred             ccceee
Confidence            886443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.22  E-value=8.2e-08  Score=82.67  Aligned_cols=223  Identities=9%  Similarity=0.004  Sum_probs=139.4

Q ss_pred             CCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEE-EeeCCCeEE
Q 015490          114 DLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFA-AGSENGNLR  192 (406)
Q Consensus       114 ~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~~~dg~i~  192 (406)
                      ..+..++|++++..|+.+....-+|+.++.........         .  .........+++++++..++ +-...+.|.
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~---------~--~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~  104 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTI---------I--RQDLGSPEGIALDHLGRTIFWTDSQLDRIE  104 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEE---------E--CTTCCCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEE---------E--ECCCCCccEEEEEecCCeEEEEECCCCEEE
Confidence            45789999998888887764444676676543221110         0  01224678899999765554 445567999


Q ss_pred             EEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeC---CCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceE
Q 015490          193 VFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGN---RGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYV  269 (406)
Q Consensus       193 vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (406)
                      +++++.................++++|++..|+.+..   .+.|..+++.... ...+..........+++++++..   
T Consensus       105 ~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~---  180 (267)
T 1npe_A          105 VAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQ---  180 (267)
T ss_dssp             EEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTE---
T ss_pred             EEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCE---
Confidence            9998643322222222245789999997666666554   3678888875432 22221112234678999998774   


Q ss_pred             EEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCceEEEEeecccccceEE
Q 015490          270 LYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGT-ASGDISIIDSSSLQVRTAVKKAHLGIVTA  348 (406)
Q Consensus       270 l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~v~~  348 (406)
                        +..+....+.|..+|............ ......++..  +..|+++. ..+.|.++|..+++.+..+..+.......
T Consensus       181 --lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~g  255 (267)
T 1npe_A          181 --LCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYG  255 (267)
T ss_dssp             --EEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCC
T ss_pred             --EEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccce
Confidence              334445678999999986544333332 2344667654  45555555 46889999999999888875332234678


Q ss_pred             EEEcCCCC
Q 015490          349 LAFSYDSR  356 (406)
Q Consensus       349 ~~~sp~~~  356 (406)
                      +++.|++.
T Consensus       256 i~~~~~~~  263 (267)
T 1npe_A          256 ITIALSQC  263 (267)
T ss_dssp             EEEECSCC
T ss_pred             eeecCccC
Confidence            88888764

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.19  E-value=1.8e-08  Score=98.55  Aligned_cols=236  Identities=14%  Similarity=0.129  Sum_probs=155.2

Q ss_pred             CeEEEEEecccccceeecceeccce--ee----------------ecc---cccCcEEEEEECCCCCEEEEeeCCC----
Q 015490          135 SCRLFEWDEVENTEIRRLGVKISEK--VL----------------SQL---ENVGQQLALTFDSEGTIFAAGSENG----  189 (406)
Q Consensus       135 ~~~i~~~~~~~~~~~~~~~~~~~~~--~~----------------~~~---~~~~~v~~~~~s~~g~~l~~~~~dg----  189 (406)
                      ...|+-+|..+++.+..+...+...  ..                ...   .+......+++++++.+++.+..++    
T Consensus       189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~  268 (677)
T 1kb0_A          189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS  268 (677)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred             CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence            4578888888888777665421110  00                000   1112223578889888888877654    


Q ss_pred             ---------------eEEEEeCCCcceEeeeeccCC---------ceeEEEEccCC---CEEEEEeCCCCEEEEEcCCCe
Q 015490          190 ---------------NLRVFKWPSLEIILNESEAHA---------SVKDLSFSPDG---KFLVSLGNRGPGRVWDLASSA  242 (406)
Q Consensus       190 ---------------~i~vwd~~~~~~~~~~~~~~~---------~i~~~~~s~~~---~~l~s~s~d~~i~iwd~~~~~  242 (406)
                                     .|..+|.++|+.+..+...+.         ...-+....+|   ..++.++.+|.++++|.++|+
T Consensus       269 ~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~  348 (677)
T 1kb0_A          269 HKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK  348 (677)
T ss_dssp             HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             CCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC
Confidence                           599999999998876653211         12223333467   678889999999999999999


Q ss_pred             eeeecccCCc----------ceE------------------------EEEEEEcCCCCceEEEEEEEc------------
Q 015490          243 VATPLAKEND----------ELF------------------------ASCRFSPLNNEDYVLYIAAIT------------  276 (406)
Q Consensus       243 ~~~~~~~~~~----------~~~------------------------~~~~~~~~~~~~~~l~~~~~~------------  276 (406)
                      .+..+.....          ..+                        ..++++|+...   +|+....            
T Consensus       349 ~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~---~yv~~~~~~~~~~~~~~~~  425 (677)
T 1kb0_A          349 FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGL---VYLPAQNVPVNLMDDKKWE  425 (677)
T ss_dssp             EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTE---EEEEEEECCCEEEECTTCC
T ss_pred             EeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCE---EEEeChhcceeeecccccc
Confidence            8765432210          011                        14678887763   3332220            


Q ss_pred             ----------------------------CCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 015490          277 ----------------------------DRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIID  328 (406)
Q Consensus       277 ----------------------------~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d  328 (406)
                                                  ...+.|..||+.+++.+-.+... .++....+..++..+++++.||.+++||
T Consensus       426 ~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~~~g~~v~~g~~dg~l~a~D  504 (677)
T 1kb0_A          426 FNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYH  504 (677)
T ss_dssp             TTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             cccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC-CCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence                                        01388999999999988877654 3344455667788999999999999999


Q ss_pred             CCCceEEEEeecccccceEEEEEcCCCCeEEEE-EC----------------CCcEEEEEecC
Q 015490          329 SSSLQVRTAVKKAHLGIVTALAFSYDSRALVSA-SM----------------DSSVRVTVIED  374 (406)
Q Consensus       329 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~-s~----------------dg~i~iw~~~~  374 (406)
                      ..+++.+..+..++.....-+.+..+|+.+++. +.                .+.+.+|.+..
T Consensus       505 ~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~  567 (677)
T 1kb0_A          505 AATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG  567 (677)
T ss_dssp             TTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred             CCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence            999999998874444444456777888755433 22                36788898874

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.16  E-value=5.7e-08  Score=83.69  Aligned_cols=206  Identities=11%  Similarity=0.010  Sum_probs=128.7

Q ss_pred             CcEEEEEECCCCCEEE-EeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEe-CCCCEEEEEcCCCeeee
Q 015490          168 GQQLALTFDSEGTIFA-AGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLG-NRGPGRVWDLASSAVAT  245 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s-~d~~i~iwd~~~~~~~~  245 (406)
                      ..+..++|++++..|+ +-..++.|.+++...................+++++++..|+.+. ..+.|.++++.......
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~  115 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence            3567899999765555 445578999999876544332222224678999999766665554 56789999986433222


Q ss_pred             ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEee-ecCCCeEEEEEcCCCCEEEEEeC-CCc
Q 015490          246 PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQ-VVREPVSSFNVSADGKLLAVGTA-SGD  323 (406)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~~-dg~  323 (406)
                      .... .......++++|++..   +|++-.....+.|..+++..... ..+. ..-.....++++|+++.|+.+.. .+.
T Consensus       116 ~~~~-~~~~P~~i~vd~~~g~---lyv~~~~~~~~~I~~~~~dg~~~-~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~  190 (267)
T 1npe_A          116 LFDT-GLVNPRGIVTDPVRGN---LYWTDWNRDNPKIETSHMDGTNR-RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR  190 (267)
T ss_dssp             EECS-SCSSEEEEEEETTTTE---EEEEECCSSSCEEEEEETTSCCC-EEEECTTCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             EEEC-CCCCccEEEEeeCCCE---EEEEECCCCCcEEEEEecCCCCc-EEEEECCCCCCcEEEEcCCCCEEEEEECCCCE
Confidence            2221 1234578999997664   44443222257888888764322 2221 22245789999998877766655 678


Q ss_pred             EEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490          324 ISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       324 i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~  381 (406)
                      |.++|.........+. . ......++.. ++..+++...++.|.++|..+++.+..+
T Consensus       191 I~~~~~~g~~~~~~~~-~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i  245 (267)
T 1npe_A          191 AECLNPAQPGRRKVLE-G-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTF  245 (267)
T ss_dssp             EEEEETTEEEEEEEEE-C-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEEecCCCceEEEec-C-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEE
Confidence            9999997654433332 2 2334566654 3444444445689999999888765544

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.15  E-value=1.1e-11  Score=112.53  Aligned_cols=187  Identities=15%  Similarity=0.047  Sum_probs=98.6

Q ss_pred             CCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceE
Q 015490          124 HGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEII  202 (406)
Q Consensus       124 ~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~  202 (406)
                      ++..+++++ ++  .|+.|+..+++....+..             +.+.+..+..++..+++++.||.|+.||..+++.+
T Consensus         8 ~~~~v~~gs~dg--~v~a~d~~tG~~~W~~~~-------------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~   72 (369)
T 2hz6_A            8 PETLLFVSTLDG--SLHAVSKRTGSIKWTLKE-------------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGL   72 (369)
T ss_dssp             CTTEEEEEETTS--EEEEEETTTCCEEEEEEC-------------CCSCCCC-----CCEEECTTTCCEEEC-----CCS
T ss_pred             eCCEEEEEcCCC--EEEEEECCCCCEEEEecC-------------CCceecceEcCCCEEEEeCCCCEEEEEECCCCcee
Confidence            456677776 44  566677776766554322             22333344567778888889999999999888876


Q ss_pred             eeeeccCC-cee-EEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCc
Q 015490          203 LNESEAHA-SVK-DLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGA  280 (406)
Q Consensus       203 ~~~~~~~~-~i~-~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  280 (406)
                      .....+.. .+. ...+. ++..+++++.++.++.||.++|+....+..+.     ...++|++..   +   ..++.++
T Consensus        73 w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-----~~~~~p~~~~---v---~~~~~dg  140 (369)
T 2hz6_A           73 TKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-----ADSLSPSTSL---L---YLGRTEY  140 (369)
T ss_dssp             EECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC------------------------------E---EEEEEEE
T ss_pred             eeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-----cccccccCCE---E---EEEecCC
Confidence            55432211 111 11111 34567788889999999999999877665432     2345565542   2   2335678


Q ss_pred             EEEEEeCCCceEEEEeeecCCCeEEEEEcCCC---CEEEEEeCCCcEEEEECCCceEEEEee
Q 015490          281 SIVTWNTTTWKRIRTKQVVREPVSSFNVSADG---KLLAVGTASGDISIIDSSSLQVRTAVK  339 (406)
Q Consensus       281 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~  339 (406)
                      .|+.||.++++.+..+..+.  .....++++.   ..+++++.+|.|+.||..+++.+....
T Consensus       141 ~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          141 TITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             EEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred             EEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence            99999999988765554321  1223344432   567778899999999999998877664

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.14  E-value=3.7e-08  Score=89.07  Aligned_cols=230  Identities=8%  Similarity=0.036  Sum_probs=144.5

Q ss_pred             CCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEe-------cCCCCceEEEEccCCCeEEEEe-c----C
Q 015490           67 RRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELR-------TDSDLPYRMAIHPHGDGIICAL-Q----N  134 (406)
Q Consensus        67 ~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~sp~~~~l~~~~-~----~  134 (406)
                      ...+++++.+.+..         .++.+|.......++...+++       ........+..+|+| .++++. +    +
T Consensus        93 ~~r~~l~v~~l~s~---------~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~  162 (462)
T 2ece_A           93 IERRFLIVPGLRSS---------RIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEG  162 (462)
T ss_dssp             CCSCEEEEEBTTTC---------CEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCS
T ss_pred             ccCCEEEEccCCCC---------eEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCC
Confidence            66778887765443         456666554433344455552       112245678889999 555443 3    2


Q ss_pred             CeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEee-------------------CCCeEEEEe
Q 015490          135 SCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGS-------------------ENGNLRVFK  195 (406)
Q Consensus       135 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-------------------~dg~i~vwd  195 (406)
                      ...|..+|..+.+.+..+.....        ....-..+.|+|+++.+++..                   ...+|.+||
T Consensus       163 ~g~v~vlD~~T~~v~~~~~~~~~--------~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D  234 (462)
T 2ece_A          163 PGGILMLDHYSFEPLGKWEIDRG--------DQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWD  234 (462)
T ss_dssp             CCEEEEECTTTCCEEEECCSBCT--------TCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEE
T ss_pred             CCeEEEEECCCCeEEEEEccCCC--------CccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEE
Confidence            25677788876665555432100        012234578899999888874                   368999999


Q ss_pred             CCCcceEeeeeccC--CceeEEEE--ccCCCEEEEEe------CCCCEEEEEcCCCeee--ee--cccC-----------
Q 015490          196 WPSLEIILNESEAH--ASVKDLSF--SPDGKFLVSLG------NRGPGRVWDLASSAVA--TP--LAKE-----------  250 (406)
Q Consensus       196 ~~~~~~~~~~~~~~--~~i~~~~~--s~~~~~l~s~s------~d~~i~iwd~~~~~~~--~~--~~~~-----------  250 (406)
                      +.+++.+..+....  .....+.|  +|+++++++++      .+++|.+|....++..  ..  +...           
T Consensus       235 ~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~  314 (462)
T 2ece_A          235 LRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILK  314 (462)
T ss_dssp             TTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGG
T ss_pred             CCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccc
Confidence            99887777665532  24456656  99999888776      4567877665443211  11  0100           


Q ss_pred             ----CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC---CceEEEEeeecCC--------------CeEEEEEc
Q 015490          251 ----NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT---TWKRIRTKQVVRE--------------PVSSFNVS  309 (406)
Q Consensus       251 ----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~---~~~~~~~~~~~~~--------------~i~~~~~s  309 (406)
                          .......+.++++++.     +.++....+.|.+||+.   +.+.+..+.....              ....+.++
T Consensus       315 ~f~~~~~~pa~I~lS~DGrf-----LYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lS  389 (462)
T 2ece_A          315 PFKAVPPLVTDIDISLDDKF-----LYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEIS  389 (462)
T ss_dssp             GGTEECCCCCCEEECTTSCE-----EEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEEC
T ss_pred             ccccCCCceeEEEECCCCCE-----EEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEc
Confidence                0123567899999995     45566677899999985   3455555544311              25789999


Q ss_pred             CCCCEEEEEe
Q 015490          310 ADGKLLAVGT  319 (406)
Q Consensus       310 p~~~~l~~~~  319 (406)
                      |||++|+++.
T Consensus       390 pDGk~LyVaN  399 (462)
T 2ece_A          390 RDGRRVYVTN  399 (462)
T ss_dssp             TTSSEEEEEC
T ss_pred             CCCCEEEEEc
Confidence            9999999988

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.13  E-value=2e-08  Score=98.45  Aligned_cols=185  Identities=16%  Similarity=0.208  Sum_probs=126.4

Q ss_pred             EEEECCCCCEEEEeeCCCe-------------------EEEEeCCCcceEeeeeccCC---------ceeEEEEccCCC-
Q 015490          172 ALTFDSEGTIFAAGSENGN-------------------LRVFKWPSLEIILNESEAHA---------SVKDLSFSPDGK-  222 (406)
Q Consensus       172 ~~~~s~~g~~l~~~~~dg~-------------------i~vwd~~~~~~~~~~~~~~~---------~i~~~~~s~~~~-  222 (406)
                      .++++|++.+++.+..++.                   |..+|.++|+.+..+...+.         .+.......+|+ 
T Consensus       239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~  318 (689)
T 1yiq_A          239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP  318 (689)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred             ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE
Confidence            5788898888998887764                   99999999998877654211         111122223565 


Q ss_pred             --EEEEEeCCCCEEEEEcCCCeeeeecccCCc--------------------------------------ceEEEEEEEc
Q 015490          223 --FLVSLGNRGPGRVWDLASSAVATPLAKEND--------------------------------------ELFASCRFSP  262 (406)
Q Consensus       223 --~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~  262 (406)
                        .++.++.+|.++++|.++|+.+........                                      .....++|+|
T Consensus       319 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp  398 (689)
T 1yiq_A          319 RKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP  398 (689)
T ss_dssp             EEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET
T ss_pred             EEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC
Confidence              788899999999999999988743221110                                      0011267777


Q ss_pred             CCCCceEEEEEEEc------------------------------------------CCCcEEEEEeCCCceEEEEeeecC
Q 015490          263 LNNEDYVLYIAAIT------------------------------------------DRGASIVTWNTTTWKRIRTKQVVR  300 (406)
Q Consensus       263 ~~~~~~~l~~~~~~------------------------------------------~~~~~i~~~d~~~~~~~~~~~~~~  300 (406)
                      +...   +|+....                                          ..++.|+.||+.+++.+-.+..+.
T Consensus       399 ~~~~---~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~  475 (689)
T 1yiq_A          399 DTGL---VYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT  475 (689)
T ss_dssp             TTTE---EEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS
T ss_pred             CCCE---EEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC
Confidence            7662   3332110                                          014889999999999988877654


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEE
Q 015490          301 EPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVS  360 (406)
Q Consensus       301 ~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s  360 (406)
                       +...-.+...+.++++++.||.++.||.++++.+..+..++.....-+.|..+|+..++
T Consensus       476 -~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~  534 (689)
T 1yiq_A          476 -IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT  534 (689)
T ss_dssp             -SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             -CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence             23333556678899999999999999999999998886444333345777888875443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.10  E-value=5e-08  Score=81.84  Aligned_cols=191  Identities=13%  Similarity=0.190  Sum_probs=131.6

Q ss_pred             eeeccccc--CcEEEEEECCCCCEEEEeeCCC--eEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEe-CCCCEE
Q 015490          160 VLSQLENV--GQQLALTFDSEGTIFAAGSENG--NLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLG-NRGPGR  234 (406)
Q Consensus       160 ~~~~~~~~--~~v~~~~~s~~g~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s-~d~~i~  234 (406)
                      .++++.|.  .....+.|+ ++.++.+.+.+|  .|+++|+.+++.+..+.... ........+++..|.... .++.+.
T Consensus        33 vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~  110 (262)
T 3nol_A           33 IVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGF  110 (262)
T ss_dssp             EEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEE
T ss_pred             EEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEE
Confidence            34444444  334788998 677777777766  89999999999887775433 344433333455666555 578999


Q ss_pred             EEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC-----CCeEEEEEc
Q 015490          235 VWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR-----EPVSSFNVS  309 (406)
Q Consensus       235 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-----~~i~~~~~s  309 (406)
                      +||..+.+.+.++.....    ...+++++..     +..+ +..+.|.++|..+.+.+.++....     ..+..+.|.
T Consensus       111 v~D~~t~~~~~ti~~~~e----G~glt~dg~~-----L~~S-dGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~  180 (262)
T 3nol_A          111 VWNIRNLRQVRSFNYDGE----GWGLTHNDQY-----LIMS-DGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV  180 (262)
T ss_dssp             EEETTTCCEEEEEECSSC----CCCEEECSSC-----EEEC-CSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE
T ss_pred             EEECccCcEEEEEECCCC----ceEEecCCCE-----EEEE-CCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE
Confidence            999999999988875432    2344466765     2333 347889999999999888776532     334567776


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCceEEEEeecc-c----------ccceEEEEEcCCCCeEEEEEC
Q 015490          310 ADGKLLAVGTASGDISIIDSSSLQVRTAVKKA-H----------LGIVTALAFSYDSRALVSASM  363 (406)
Q Consensus       310 p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~----------~~~v~~~~~sp~~~~l~s~s~  363 (406)
                       +|+..+..-.++.|.+.|.++++.+..+... .          ....+.|+|+|+++.|+..+.
T Consensus       181 -~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          181 -DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             -TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             -CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence             6765544445889999999999998888621 0          124579999998777766654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.10  E-value=7.4e-08  Score=81.78  Aligned_cols=197  Identities=8%  Similarity=-0.058  Sum_probs=132.9

Q ss_pred             ceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEE
Q 015490          116 PYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVF  194 (406)
Q Consensus       116 v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vw  194 (406)
                      ...++|+|++..+++.+ .+.-.|..+|..+++....+.+.          .......+++.. +++.++.-.++.+.++
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~----------~~~fgeGi~~~g-~~lyv~t~~~~~v~vi   91 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMD----------DSYFGEGLTLLN-EKLYQVVWLKNIGFIY   91 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECC----------TTCCEEEEEEET-TEEEEEETTCSEEEEE
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecC----------CCcceEEEEEeC-CEEEEEEecCCEEEEE
Confidence            57999999864444433 34457777888877665554331          112223455542 2444455568899999


Q ss_pred             eCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCc-c---eEEEEEEEcCCCCceEE
Q 015490          195 KWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKEND-E---LFASCRFSPLNNEDYVL  270 (406)
Q Consensus       195 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~l  270 (406)
                      |..+.+.+..+.....  ....+++||+.++++..++.|.++|..+.+....+..... .   ....+.|. ++.    +
T Consensus        92 D~~t~~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~----l  164 (266)
T 2iwa_A           92 DRRTLSNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE----V  164 (266)
T ss_dssp             ETTTTEEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE----E
T ss_pred             ECCCCcEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE----E
Confidence            9999988887754312  1234566888777777788999999999888877664321 1   25567777 543    3


Q ss_pred             EEEEEcCCCcEEEEEeCCCceEEEEeeecC-------------CCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCc
Q 015490          271 YIAAITDRGASIVTWNTTTWKRIRTKQVVR-------------EPVSSFNVSADGKLLAVGT-ASGDISIIDSSSL  332 (406)
Q Consensus       271 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-------------~~i~~~~~sp~~~~l~~~~-~dg~i~i~d~~~~  332 (406)
                        .+....++.|.+.|..+++.+..+....             .....++|+|+++.+++++ ..+.+...++...
T Consensus       165 --yvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          165 --WANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             --EEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             --EEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence              3444567899999999999988887531             3568999999987666555 5788888887643

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.05  E-value=3.5e-08  Score=92.35  Aligned_cols=233  Identities=14%  Similarity=0.056  Sum_probs=143.7

Q ss_pred             CCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEe-cCCCCceEEEE-c-cCCCeEEEEecCCe-------
Q 015490           67 RRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELR-TDSDLPYRMAI-H-PHGDGIICALQNSC-------  136 (406)
Q Consensus        67 ~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~-s-p~~~~l~~~~~~~~-------  136 (406)
                      +++++++++.....         .+..+|....    +....+. .....+..+++ + |+++++++++...+       
T Consensus        99 ~DG~~lfVnd~~~~---------rVavIdl~t~----~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~  165 (595)
T 1fwx_A           99 YDGRFLFMNDKANT---------RVARVRCDVM----KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGT  165 (595)
T ss_dssp             EEEEEEEEEETTTT---------EEEEEETTTT----EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSS
T ss_pred             cCCCEEEEEcCCCC---------EEEEEECCCc----eEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCc
Confidence            35566666543332         4555666542    2222222 12245788888 5 99999998852221       


Q ss_pred             ----------EEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCC-----------------
Q 015490          137 ----------RLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENG-----------------  189 (406)
Q Consensus       137 ----------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg-----------------  189 (406)
                                .+-.+|..+.+...++.+            .+....++++|||+++++.+.+.                 
T Consensus       166 ~l~~~~~~~~~vtvID~~t~~v~~qI~V------------gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v  233 (595)
T 1fwx_A          166 NMEDVANYVNVFTAVDADKWEVAWQVLV------------SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHI  233 (595)
T ss_dssp             STTCGGGEEEEEEEEETTTTEEEEEEEE------------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEE
T ss_pred             ccccccccCceEEEEECCCCeEEEEEEe------------CCCccceEECCCCCEEEEEecCcccCcchhhccccccceE
Confidence                      444455554433333322            22345577899999888877543                 


Q ss_pred             ---------------------eEEEEeCCC--cce-EeeeeccCCceeEEEEccCCCEEEEEe-CCCCEEEEEcCCCe--
Q 015490          190 ---------------------NLRVFKWPS--LEI-ILNESEAHASVKDLSFSPDGKFLVSLG-NRGPGRVWDLASSA--  242 (406)
Q Consensus       190 ---------------------~i~vwd~~~--~~~-~~~~~~~~~~i~~~~~s~~~~~l~s~s-~d~~i~iwd~~~~~--  242 (406)
                                           .|.|.|..+  ++. +..+... ....++.++|||+++++++ .+.+|.++|+.+.+  
T Consensus       234 ~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~  312 (595)
T 1fwx_A          234 VVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAV  312 (595)
T ss_dssp             EEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHH
T ss_pred             EEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccc
Confidence                                 366666665  333 3333322 2467899999999888776 57799999998653  


Q ss_pred             ----------eeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC----------ceEEEEeeecCCC
Q 015490          243 ----------VATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT----------WKRIRTKQVVREP  302 (406)
Q Consensus       243 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~----------~~~~~~~~~~~~~  302 (406)
                                ....+.  .+.....++|+++| .     +.++..-++.|..||+.+          .+.+.++..|-.+
T Consensus       313 ~~~~l~~~~~v~~~v~--vG~gP~h~aF~~dG-~-----aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqp  384 (595)
T 1fwx_A          313 FYENADPRSAVVAEPE--LGLGPLHTAFDGRG-N-----AYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQP  384 (595)
T ss_dssp             HHSCCCGGGGEEECCB--CCSCEEEEEECTTS-E-----EEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCE
T ss_pred             cccccCcccceEEEcC--CCCCcceEEECCCC-e-----EEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccccc
Confidence                      233333  23346789999999 5     334456789999999877          5567777665332


Q ss_pred             e-----EEEEEcCCCCEEEEEeC---CCc----------EEEEECCCce
Q 015490          303 V-----SSFNVSADGKLLAVGTA---SGD----------ISIIDSSSLQ  333 (406)
Q Consensus       303 i-----~~~~~sp~~~~l~~~~~---dg~----------i~i~d~~~~~  333 (406)
                      -     ..+.++|||++|++...   |+.          -.++|+..++
T Consensus       385 Gh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          385 GHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             EEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             ccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence            1     12245799999999875   332          2889996544

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.05  E-value=8.4e-07  Score=77.98  Aligned_cols=227  Identities=12%  Similarity=0.059  Sum_probs=133.0

Q ss_pred             CCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCC--CeE
Q 015490          114 DLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSEN--GNL  191 (406)
Q Consensus       114 ~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d--g~i  191 (406)
                      .....++|+++++.+++.. ...+|+.++.... ...            ..........+++.++|+++++....  ..|
T Consensus        32 ~~pegia~~~~g~lyv~d~-~~~~I~~~d~~g~-~~~------------~~~~~~~p~gia~~~dG~l~vad~~~~~~~v   97 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNH-EVGEIVSITPDGN-QQI------------HATVEGKVSGLAFTSNGDLVATGWNADSIPV   97 (306)
T ss_dssp             CCEEEEEECTTSCEEEEET-TTTEEEEECTTCC-EEE------------EEECSSEEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CCcceEEECCCCCEEEEeC-CCCeEEEECCCCc-eEE------------EEeCCCCceeEEEcCCCcEEEEeccCCcceE
Confidence            4567899999988444432 3336777775432 111            11123467889999999966655332  247


Q ss_pred             EEEeCCCcceEeeeecc-CCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCee-eee--------cccCCcceEEEEEEE
Q 015490          192 RVFKWPSLEIILNESEA-HASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAV-ATP--------LAKENDELFASCRFS  261 (406)
Q Consensus       192 ~vwd~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~-~~~--------~~~~~~~~~~~~~~~  261 (406)
                      ..+|..+++........ ......++..+++..+++-..++.|..+|..+++. +..        .....-.....+  +
T Consensus        98 ~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s  175 (306)
T 2p4o_A           98 VSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--K  175 (306)
T ss_dssp             EEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--E
T ss_pred             EEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--C
Confidence            77777777653222211 12334555555554444444688899999876431 110        000111123445  7


Q ss_pred             cCCCCceEEEEEEEcCCCcEEEEEeCCC-ceE--EEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEE--
Q 015490          262 PLNNEDYVLYIAAITDRGASIVTWNTTT-WKR--IRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRT--  336 (406)
Q Consensus       262 ~~~~~~~~l~~~~~~~~~~~i~~~d~~~-~~~--~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~--  336 (406)
                      ++++.     +.++....+.|..+|+.. ++.  ...+... .....++++++|+++++....+.|.++|.. ++...  
T Consensus       176 ~dg~~-----lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~  248 (306)
T 2p4o_A          176 RFGNF-----LYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIA  248 (306)
T ss_dssp             EETTE-----EEEEETTTTEEEEEEBCTTSCBCCCEEEEES-CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEE
T ss_pred             cCCCE-----EEEEeCCCCEEEEEEeCCCCCCCccEEEecc-CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEe
Confidence            88764     334456678999999864 321  1122111 235678999999877666667889999975 55432  


Q ss_pred             EeecccccceEEEEEc---CCCCeEEEEECC
Q 015490          337 AVKKAHLGIVTALAFS---YDSRALVSASMD  364 (406)
Q Consensus       337 ~~~~~~~~~v~~~~~s---p~~~~l~s~s~d  364 (406)
                      .+. .....+++++|.   |+++.|+.++..
T Consensus       249 ~~~-~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          249 QAE-QGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             CGG-GTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             ecc-cccCCceEEEEecccCCCCEEEEECCC
Confidence            222 223458899998   887777665543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.04  E-value=8.5e-08  Score=80.42  Aligned_cols=188  Identities=16%  Similarity=0.212  Sum_probs=128.5

Q ss_pred             eeeeccccc--CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeE--EEEccCCCEEEE-EeCCCCE
Q 015490          159 KVLSQLENV--GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKD--LSFSPDGKFLVS-LGNRGPG  233 (406)
Q Consensus       159 ~~~~~~~~~--~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~--~~~s~~~~~l~s-~s~d~~i  233 (406)
                      +.+.++.+.  .....+.|+ ++.++.+.+.+|.|+++|+++++.+..+ - ......  +++  ++..|.. .-.++.+
T Consensus        44 ~Vv~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~--~g~~Ly~ltw~~~~v  118 (268)
T 3nok_A           44 HIIREYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLAS--DGERLYQLTWTEGLL  118 (268)
T ss_dssp             EEEEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEE--CSSCEEEEESSSCEE
T ss_pred             EEEEEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEE--eCCEEEEEEccCCEE
Confidence            344555454  334788887 4677777788899999999999988777 2 223333  555  4444444 4468899


Q ss_pred             EEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC-----CCeEEEEE
Q 015490          234 RVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR-----EPVSSFNV  308 (406)
Q Consensus       234 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-----~~i~~~~~  308 (406)
                      .+||..+.+.+.++......    ..++++++.     +..+ +.++.|.++|..+.+.+.++....     ..+..+.|
T Consensus       119 ~V~D~~Tl~~~~ti~~~~eG----wGLt~Dg~~-----L~vS-dGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~  188 (268)
T 3nok_A          119 FTWSGMPPQRERTTRYSGEG----WGLCYWNGK-----LVRS-DGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELEC  188 (268)
T ss_dssp             EEEETTTTEEEEEEECSSCC----CCEEEETTE-----EEEE-CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred             EEEECCcCcEEEEEeCCCce----eEEecCCCE-----EEEE-CCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEE
Confidence            99999999999888754322    233356664     2333 358899999999999888776532     24566777


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCceEEEEeecc------------cccceEEEEEcCCCCeEEEEE
Q 015490          309 SADGKLLAVGTASGDISIIDSSSLQVRTAVKKA------------HLGIVTALAFSYDSRALVSAS  362 (406)
Q Consensus       309 sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------~~~~v~~~~~sp~~~~l~s~s  362 (406)
                      . +|+..+..-.++.|.+.|.++++.+..+...            ...-.+.|+++|+++.|+..+
T Consensus       189 ~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          189 A-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             E-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             e-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            7 6754444445889999999999998887621            112467999999766555444

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.04  E-value=3.5e-07  Score=82.89  Aligned_cols=227  Identities=9%  Similarity=0.057  Sum_probs=139.2

Q ss_pred             CCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEe
Q 015490          124 HGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIIL  203 (406)
Q Consensus       124 ~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~  203 (406)
                      ++..+++++.. ..|+.++..+++........  ...     ...+    ..  .+..+++++.++.|..+|..+++.+.
T Consensus       102 ~~~~v~v~~~~-g~l~a~d~~tG~~~W~~~~~--~~~-----~~~p----~~--~~~~v~v~~~~g~l~~~d~~tG~~~W  167 (376)
T 3q7m_A          102 SGGHVYIGSEK-AQVYALNTSDGTVAWQTKVA--GEA-----LSRP----VV--SDGLVLIHTSNGQLQALNEADGAVKW  167 (376)
T ss_dssp             ETTEEEEEETT-SEEEEEETTTCCEEEEEECS--SCC-----CSCC----EE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             eCCEEEEEcCC-CEEEEEECCCCCEEEEEeCC--Cce-----EcCC----EE--ECCEEEEEcCCCeEEEEECCCCcEEE
Confidence            34556666522 26677787777665544331  000     0011    11  13467788889999999999998876


Q ss_pred             eeeccCCce-----eEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcce---------E-EEEEEEcCCCCce
Q 015490          204 NESEAHASV-----KDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDEL---------F-ASCRFSPLNNEDY  268 (406)
Q Consensus       204 ~~~~~~~~i-----~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~---------~-~~~~~~~~~~~~~  268 (406)
                      .........     ......  +..++.++.++.+..+|..+++............         + ......  +..  
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~--  241 (376)
T 3q7m_A          168 TVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV--NGV--  241 (376)
T ss_dssp             EEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE--TTE--
T ss_pred             EEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE--CCE--
Confidence            654432211     222222  3467778889999999999998776554321100         0 001111  221  


Q ss_pred             EEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEE
Q 015490          269 VLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTA  348 (406)
Q Consensus       269 ~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~  348 (406)
                       +   ..+..++.+..+|..+++.+.....  .....+..  ++..+++++.++.|..+|..+++.+..........+..
T Consensus       242 -v---~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~  313 (376)
T 3q7m_A          242 -V---FALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTS  313 (376)
T ss_dssp             -E---EEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCC
T ss_pred             -E---EEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccC
Confidence             2   2235678999999999988766543  23444444  36678888889999999999999876654112222333


Q ss_pred             EEEcCCCCeEEEEECCCcEEEEEecCCcCCCC
Q 015490          349 LAFSYDSRALVSASMDSSVRVTVIEDKKKSGG  380 (406)
Q Consensus       349 ~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~  380 (406)
                      ....  +..|+.++.+|.|+.+|..+++.+..
T Consensus       314 ~~~~--~~~l~v~~~~g~l~~~d~~tG~~~~~  343 (376)
T 3q7m_A          314 PVLY--NGNLVVGDSEGYLHWINVEDGRFVAQ  343 (376)
T ss_dssp             CEEE--TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CEEE--CCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            3332  45788888999999999999886543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.99  E-value=9.9e-07  Score=73.37  Aligned_cols=191  Identities=16%  Similarity=0.191  Sum_probs=129.2

Q ss_pred             eeeeccccc--CcEEEEEECCCCCEEEEeeCC--CeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEE-eCCCCE
Q 015490          159 KVLSQLENV--GQQLALTFDSEGTIFAAGSEN--GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSL-GNRGPG  233 (406)
Q Consensus       159 ~~~~~~~~~--~~v~~~~~s~~g~~l~~~~~d--g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-s~d~~i  233 (406)
                      +.+.++.|.  .....+.|++ +.++.+.+.+  ..|+.+|+.+++....+.-... ........++..|... -.++.+
T Consensus        10 ~v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~~v   87 (243)
T 3mbr_X           10 RVVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNHEG   87 (243)
T ss_dssp             EEEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEE
T ss_pred             EEEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCCEE
Confidence            344555554  4567899986 5666666664  4899999999998877654333 2333233334555544 468899


Q ss_pred             EEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC-----CCeEEEEE
Q 015490          234 RVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR-----EPVSSFNV  308 (406)
Q Consensus       234 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-----~~i~~~~~  308 (406)
                      .+||..+.+.+.++......    ..+.+++..     +..+ +.++.|.++|..+.+.+.++....     ..+..+.+
T Consensus        88 ~v~D~~tl~~~~ti~~~~~G----wglt~dg~~-----L~vS-dgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~  157 (243)
T 3mbr_X           88 FVYDLATLTPRARFRYPGEG----WALTSDDSH-----LYMS-DGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEW  157 (243)
T ss_dssp             EEEETTTTEEEEEEECSSCC----CEEEECSSC-----EEEE-CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred             EEEECCcCcEEEEEeCCCCc----eEEeeCCCE-----EEEE-CCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEE
Confidence            99999999999888754332    233466665     3333 348899999999999888776532     34566776


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCceEEEEeecc------------cccceEEEEEcCCCCeEEEEE
Q 015490          309 SADGKLLAVGTASGDISIIDSSSLQVRTAVKKA------------HLGIVTALAFSYDSRALVSAS  362 (406)
Q Consensus       309 sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------~~~~v~~~~~sp~~~~l~s~s  362 (406)
                      . +|+..+..-.+..|.+.|..+++.+..+...            ...-.+.|+++|+++.|...+
T Consensus       158 ~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          158 V-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             E-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             e-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            5 6665544445789999999999998887622            112457999999876665554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.97  E-value=1.3e-06  Score=73.76  Aligned_cols=203  Identities=7%  Similarity=0.129  Sum_probs=135.1

Q ss_pred             EecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCC
Q 015490          109 LRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSEN  188 (406)
Q Consensus       109 ~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  188 (406)
                      +.+-.+.+..++|+|++..|++..+...+|+.++.. ++..+.+.+          .+....-.+++.+++.++++.-.+
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l----------~g~~D~EGIa~~~~g~~~vs~E~~   90 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL----------DFVKDLETIEYIGDNQFVISDERD   90 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC----------SSCSSEEEEEECSTTEEEEEETTT
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec----------CCCCChHHeEEeCCCEEEEEECCC
Confidence            334556789999999998898888778899999986 444443322          233567788999998877766567


Q ss_pred             CeEEEEeCCCcce---Eeeee------ccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCC---Ceeeeecc------cC
Q 015490          189 GNLRVFKWPSLEI---ILNES------EAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLAS---SAVATPLA------KE  250 (406)
Q Consensus       189 g~i~vwd~~~~~~---~~~~~------~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~---~~~~~~~~------~~  250 (406)
                      +.+.++++.....   +....      ........++|+|+++.|+++.......+|.+..   ......+.      ..
T Consensus        91 ~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~  170 (255)
T 3qqz_A           91 YAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQF  170 (255)
T ss_dssp             TEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTC
T ss_pred             CcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcccc
Confidence            8899998765432   11111      1122568999999998888877666666666541   11111110      01


Q ss_pred             CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC---------CCeEEEEEcCCCCEEEEEeCC
Q 015490          251 NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR---------EPVSSFNVSADGKLLAVGTAS  321 (406)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~---------~~i~~~~~sp~~~~l~~~~~d  321 (406)
                      .-..+..++++|...+     +.+.......|..+|... +.+..+....         .....|+|.++|+ |++.++-
T Consensus       171 ~~~d~S~l~~dp~tg~-----lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~  243 (255)
T 3qqz_A          171 TLDDVSGAEFNQQKNT-----LLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEP  243 (255)
T ss_dssp             CSSCCCEEEEETTTTE-----EEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETT
T ss_pred             ccCCceeEEEcCCCCe-----EEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCC
Confidence            1223578999998875     334457789999999774 5666555442         2568999999998 5555777


Q ss_pred             CcEEEEEC
Q 015490          322 GDISIIDS  329 (406)
Q Consensus       322 g~i~i~d~  329 (406)
                      +.++.|.-
T Consensus       244 n~~y~f~~  251 (255)
T 3qqz_A          244 NRFYRFTP  251 (255)
T ss_dssp             TEEEEEEC
T ss_pred             ceEEEEEe
Confidence            77777754

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.97  E-value=8.1e-07  Score=78.69  Aligned_cols=249  Identities=10%  Similarity=0.058  Sum_probs=143.4

Q ss_pred             CCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceecccee---------eecccccCcEEEEEECC-CCCEEE
Q 015490          114 DLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKV---------LSQLENVGQQLALTFDS-EGTIFA  183 (406)
Q Consensus       114 ~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~v~~~~~s~-~g~~l~  183 (406)
                      ....+++|.+++..++++..+ .+|+.++..... ...+........         .........+..+++.+ +|+++ 
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~-~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~-   95 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQD-GRVIKYEGPNSG-FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY-   95 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTT-SEEEEECCTTTC-EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE-
T ss_pred             CCceEEEEcCCCCEEEEEcCC-CeEEEECCCCCc-eEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEE-
Confidence            456788999998867766432 367777654322 111110000000         00001123578899998 66544 


Q ss_pred             EeeCCCeEEEEeCCCcceEeeeec-----cCCceeEEEEcc-CCCEEEEEeC-----------------CCCEEEEEcCC
Q 015490          184 AGSENGNLRVFKWPSLEIILNESE-----AHASVKDLSFSP-DGKFLVSLGN-----------------RGPGRVWDLAS  240 (406)
Q Consensus       184 ~~~~dg~i~vwd~~~~~~~~~~~~-----~~~~i~~~~~s~-~~~~l~s~s~-----------------d~~i~iwd~~~  240 (406)
                      ++...+.|..+|..++... .+..     .......+++.+ +|+..++...                 ++.|..||..+
T Consensus        96 v~d~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  174 (322)
T 2fp8_A           96 IVDCYYHLSVVGSEGGHAT-QLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST  174 (322)
T ss_dssp             EEETTTEEEEECTTCEECE-EEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred             EEECCCCEEEEeCCCCEEE-EecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence            4444455888887665422 1211     112468899999 9986665432                 36688888876


Q ss_pred             CeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCce--EEEEeeecCCCeEEEEEcCCCCEEEEE
Q 015490          241 SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK--RIRTKQVVREPVSSFNVSADGKLLAVG  318 (406)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~i~~~~~sp~~~~l~~~  318 (406)
                      ++.......  ......++++++++.   +|  ++....+.|..|++....  ....+....+ ...++++++|++.++.
T Consensus       175 ~~~~~~~~~--~~~p~gia~~~dg~~---ly--v~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~  246 (322)
T 2fp8_A          175 KETTLLLKE--LHVPGGAEVSADSSF---VL--VAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSS  246 (322)
T ss_dssp             TEEEEEEEE--ESCCCEEEECTTSSE---EE--EEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEE
T ss_pred             CEEEEeccC--CccCcceEECCCCCE---EE--EEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEe
Confidence            654332211  112346899999874   33  333456889999987421  1112211223 7889999999866665


Q ss_pred             eC----------CCcEEEEECCCceEEEEeeccc---ccceEEEEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490          319 TA----------SGDISIIDSSSLQVRTAVKKAH---LGIVTALAFSYDSRALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       319 ~~----------dg~i~i~d~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~  376 (406)
                      ..          .+.|..+|.. ++.+..+....   ...+..+++ .+++++++...++.|..+++....
T Consensus       247 ~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~~  315 (322)
T 2fp8_A          247 SEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKKG  315 (322)
T ss_dssp             EEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC----
T ss_pred             cCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccccc
Confidence            44          4668888874 66666664221   234666766 466666666678889999986543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.93  E-value=2.9e-06  Score=76.82  Aligned_cols=221  Identities=14%  Similarity=0.143  Sum_probs=131.3

Q ss_pred             CeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeee
Q 015490          126 DGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNE  205 (406)
Q Consensus       126 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~  205 (406)
                      ..++++.. ...|+.++..+++........  .... ......   ....  .+..++++..++.+..+|..+++.....
T Consensus       144 ~~v~v~~~-~g~l~~~d~~tG~~~W~~~~~--~~~~-~~~~~~---~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~  214 (376)
T 3q7m_A          144 GLVLIHTS-NGQLQALNEADGAVKWTVNLD--MPSL-SLRGES---APTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQ  214 (376)
T ss_dssp             TEEEEECT-TSEEEEEETTTCCEEEEEECC--C------CCCC---CCEE--ETTEEEECCTTTEEEEEETTTCCEEEEE
T ss_pred             CEEEEEcC-CCeEEEEECCCCcEEEEEeCC--CCce-eecCCC---CcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence            35555542 226777787777666554331  0000 000000   1111  1346778888999999999999887665


Q ss_pred             eccCC-------ceeEEEEcc--CCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEc
Q 015490          206 SEAHA-------SVKDLSFSP--DGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAIT  276 (406)
Q Consensus       206 ~~~~~-------~i~~~~~s~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  276 (406)
                      .....       .+..+.-.|  .+..++.++.++.+..+|.++++.........   ...+...  +..   +++   +
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~---~~~~~~~--~~~---l~~---~  283 (376)
T 3q7m_A          215 RISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGS---VNDFIVD--GNR---IYL---V  283 (376)
T ss_dssp             ECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCC---EEEEEEE--TTE---EEE---E
T ss_pred             ecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCC---CCCceEE--CCE---EEE---E
Confidence            43211       000011111  24578888889999999999998776554321   2233332  332   222   2


Q ss_pred             CCCcEEEEEeCCCceEEEEeee-cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceE-EEEEcCC
Q 015490          277 DRGASIVTWNTTTWKRIRTKQV-VREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVT-ALAFSYD  354 (406)
Q Consensus       277 ~~~~~i~~~d~~~~~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~-~~~~sp~  354 (406)
                      ..++.|..+|..+++.+..... ....+.....  .+..|++++.+|.+.++|..+++.+.... .....+. .....  
T Consensus       284 ~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~-~~~~~~~~~~~~~--  358 (376)
T 3q7m_A          284 DQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQK-VDSSGFQTEPVAA--  358 (376)
T ss_dssp             ETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEE-CCTTCBCSCCEEE--
T ss_pred             cCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEe-cCCCcceeCCEEE--
Confidence            3578899999999988766552 2222223333  25688889999999999999999887765 2223332 22222  


Q ss_pred             CCeEEEEECCCcEEEEE
Q 015490          355 SRALVSASMDSSVRVTV  371 (406)
Q Consensus       355 ~~~l~s~s~dg~i~iw~  371 (406)
                      +..|+.++.+|.|+.|+
T Consensus       359 ~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          359 DGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             TTEEEEEBTTSCEEEEE
T ss_pred             CCEEEEEeCCCEEEEEe
Confidence            45678889999999987

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.93  E-value=1.1e-06  Score=85.96  Aligned_cols=242  Identities=11%  Similarity=0.071  Sum_probs=150.2

Q ss_pred             CCeEEEEecCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCCEEEEeeC------CCeEEEEeCC
Q 015490          125 GDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIFAAGSE------NGNLRVFKWP  197 (406)
Q Consensus       125 ~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~------dg~i~vwd~~  197 (406)
                      +..+++++ .+.+|+-+|..+++............   ..... .++.     .++ .++++..      +|.|..+|..
T Consensus       117 ~~~v~v~~-~dg~l~alD~~tG~~~W~~~~~~~~~---~~~~~~~P~v-----~~~-~v~vg~~~~~~~~~g~v~a~D~~  186 (668)
T 1kv9_A          117 GDKVYVGT-LDGRLIALDAKTGKAIWSQQTTDPAK---PYSITGAPRV-----VKG-KVIIGNGGAEYGVRGFVSAYDAD  186 (668)
T ss_dssp             BTEEEEEC-TTSEEEEEETTTCCEEEEEECSCTTS---SCBCCSCCEE-----ETT-EEEECCBCTTTCCBCEEEEEETT
T ss_pred             CCEEEEEc-CCCEEEEEECCCCCEeeeeccCCCCC---cceecCCCEE-----ECC-EEEEeCCCCCcCCCCEEEEEECC
Confidence            44566554 22367778888887776654310000   00001 1111     133 4555433      5899999999


Q ss_pred             CcceEeeeeccCC-------------------------------ceeEEEEccCCCEEEEEeCCC---------------
Q 015490          198 SLEIILNESEAHA-------------------------------SVKDLSFSPDGKFLVSLGNRG---------------  231 (406)
Q Consensus       198 ~~~~~~~~~~~~~-------------------------------~i~~~~~s~~~~~l~s~s~d~---------------  231 (406)
                      +|+.+..+.....                               ....+++.|+...++.++.++               
T Consensus       187 tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~  266 (668)
T 1kv9_A          187 TGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDN  266 (668)
T ss_dssp             TCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCC
T ss_pred             CCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCc
Confidence            9998776542100                               112468888888888887665               


Q ss_pred             ----CEEEEEcCCCeeeeecccCC-c-------ceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeec
Q 015490          232 ----PGRVWDLASSAVATPLAKEN-D-------ELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVV  299 (406)
Q Consensus       232 ----~i~iwd~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  299 (406)
                          .|..+|.++|+..-.+...+ .       .......+..+++.   .-+++.++.+|.++++|..+++.+......
T Consensus       267 l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~---~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~  343 (668)
T 1kv9_A          267 LYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP---RKVLMQAPKNGFFYVLDRTNGKLISAEKFG  343 (668)
T ss_dssp             TTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE---EEEEEECCTTSEEEEEETTTCCEEEEEESS
T ss_pred             eeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcE---EEEEEEECCCCEEEEEECCCCCEecccccc
Confidence                39999999999876665321 1       11222233335542   113556788999999999999987543322


Q ss_pred             CC------------C------------------------eEEEEEcCCCCEEEEEe------------------------
Q 015490          300 RE------------P------------------------VSSFNVSADGKLLAVGT------------------------  319 (406)
Q Consensus       300 ~~------------~------------------------i~~~~~sp~~~~l~~~~------------------------  319 (406)
                      ..            +                        -..++++|+...+++..                        
T Consensus       344 ~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~  423 (668)
T 1kv9_A          344 KVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAA  423 (668)
T ss_dssp             CCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSS
T ss_pred             ccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCc
Confidence            10            0                        01267788777666421                        


Q ss_pred             ------------CCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490          320 ------------ASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       320 ------------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~  381 (406)
                                  .+|.|..||+.+++.+-...  +..+.....+...+.+++.++.|+.|+.||.++++.+..+
T Consensus       424 ~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~--~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~  495 (668)
T 1kv9_A          424 GFADATDVPAAVVSGALLAWDPVKQKAAWKVP--YPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQF  495 (668)
T ss_dssp             CGGGCCCCCGGGCEEEEEEEETTTTEEEEEEE--ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cccccCCCCCCCccceEEEEeCCCCcEEEEcc--CCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEe
Confidence                        23789999999999887775  2333443444556778889999999999999999876554

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.93  E-value=2.1e-08  Score=89.16  Aligned_cols=227  Identities=14%  Similarity=0.073  Sum_probs=140.3

Q ss_pred             CCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEE
Q 015490          114 DLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRV  193 (406)
Q Consensus       114 ~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~v  193 (406)
                      ..+.++...+++. +.++..+   |+.++. +++........           ........+.  +..+..++.++.|..
T Consensus        60 ~~~~~~~~~~~g~-l~v~t~~---l~~~d~-~g~~~~~~~~~-----------~~~~~~~~~~--~~~l~v~t~~~~l~~  121 (330)
T 3hxj_A           60 IIECRPSIGKDGT-IYFGSDK---VYAINP-DGTEKWRFDTK-----------KAIVSDFTIF--EDILYVTSMDGHLYA  121 (330)
T ss_dssp             EEEECCEETTTTE-ECCSSCE---EEEECC-CGGGGGGSCC----------------CCEEEE--TTEEEEECTTSEEEE
T ss_pred             CcccceEEecCCc-EEEecCc---EEEECC-CCcEEEEEECC-----------CCcccCceEE--CCEEEEEecCCEEEE
Confidence            3456667766665 4444433   666664 34433332211           0111112222  445777888899999


Q ss_pred             EeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEE
Q 015490          194 FKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIA  273 (406)
Q Consensus       194 wd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  273 (406)
                      +|.. ++...........+.++...+++. +..++.++.+..+|.. ++....+... ...+.++...+++.    + ++
T Consensus       122 ~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~-~~~~~~~~~d~~g~----l-~v  192 (330)
T 3hxj_A          122 INTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTN-DAITSAASIGKDGT----I-YF  192 (330)
T ss_dssp             ECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECS-SCCCSCCEECTTCC----E-EE
T ss_pred             EcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecC-CCceeeeEEcCCCE----E-EE
Confidence            9988 776655554444567777777776 6667888999999998 7665554432 22344555656665    2 22


Q ss_pred             EEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcC
Q 015490          274 AITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSY  353 (406)
Q Consensus       274 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp  353 (406)
                      +  .  +.|..+| .+++...........+.++..+++|. |.+++.++.+..+|. +++....+. .....+..+...+
T Consensus       193 ~--t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~-~~~~~~~~~~~~~  264 (330)
T 3hxj_A          193 G--S--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFK-TGKRIESSPVIGN  264 (330)
T ss_dssp             E--S--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEE-CSSCCCSCCEECT
T ss_pred             E--e--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEee-CCCCccccceEcC
Confidence            2  2  7789999 67777666665556678888888875 555667788888874 556555554 2333344566666


Q ss_pred             CCCeEEEEECCCcEEEEEecCCcC
Q 015490          354 DSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       354 ~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      ++. |..++.+|.|..+|. +++.
T Consensus       265 ~g~-l~v~t~~ggl~~~d~-~g~~  286 (330)
T 3hxj_A          265 TDT-IYFGSYDGHLYAINP-DGTE  286 (330)
T ss_dssp             TSC-EEEECTTCEEEEECT-TSCE
T ss_pred             CCe-EEEecCCCCEEEECC-CCcE
Confidence            664 666778888888884 5543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.91  E-value=2e-07  Score=82.68  Aligned_cols=188  Identities=9%  Similarity=-0.012  Sum_probs=123.7

Q ss_pred             EEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeeccc
Q 015490          170 QLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAK  249 (406)
Q Consensus       170 v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  249 (406)
                      +.++...+++. +..++.++.|..+|.. ++...........+.++...+++... .++  +.+..+| .+++.......
T Consensus       139 ~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~-v~t--~~l~~~d-~~g~~~~~~~~  212 (330)
T 3hxj_A          139 YATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIY-FGS--DKVYAIN-PDGTEKWNFYA  212 (330)
T ss_dssp             CSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEE-EES--SSEEEEC-TTSCEEEEECC
T ss_pred             eeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEE-EEe--CEEEEEC-CCCcEEEEEcc
Confidence            44556666776 5567778999999988 77666665555567778887787744 444  7899999 67766655443


Q ss_pred             CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 015490          250 ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDS  329 (406)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~  329 (406)
                      . ...+.++...+++.    + +++  ..++.|..+|. +++.+..+......+.++.+.+++ .|.+++.+|.|..+|.
T Consensus       213 ~-~~~~~~~~~~~~g~----l-~v~--t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~  282 (330)
T 3hxj_A          213 G-YWTVTRPAISEDGT----I-YVT--SLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP  282 (330)
T ss_dssp             S-SCCCSCCEECTTSC----E-EEE--ETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT
T ss_pred             C-CcceeceEECCCCe----E-EEE--cCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC
Confidence            2 23355667777765    2 222  34677888885 455555555444444556666666 4667788888999996


Q ss_pred             CCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490          330 SSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       330 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~  376 (406)
                       +++....+. .....+.++...++|+ |..++.+|.+++...+..+
T Consensus       283 -~g~~~~~~~-~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~~  326 (330)
T 3hxj_A          283 -DGTEKWNFE-TGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEHH  326 (330)
T ss_dssp             -TSCEEEEEE-CSSCCCSCCEECTTCC-EEEECTTSCEEEEEC----
T ss_pred             -CCcEEEEEE-cCCccccceEEcCCCE-EEEEcCCCeEEEEeccccc
Confidence             677666654 3445577778878876 5568899999988776544

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.90  E-value=5.2e-07  Score=75.71  Aligned_cols=192  Identities=10%  Similarity=-0.015  Sum_probs=125.0

Q ss_pred             ceeEEecCCCCc--eEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCE
Q 015490          105 PVAELRTDSDLP--YRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTI  181 (406)
Q Consensus       105 ~~~~~~~h~~~v--~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  181 (406)
                      .+.++ .|....  ..+.|+ ++..+.+++ ++.-.|..+|..+++....+.+.          ....-..+++  +++.
T Consensus        33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~----------~~~FgeGit~--~g~~   98 (262)
T 3nol_A           33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG----------KRYFGEGISD--WKDK   98 (262)
T ss_dssp             EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC----------TTCCEEEEEE--ETTE
T ss_pred             EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC----------CccceeEEEE--eCCE
Confidence            34444 555544  788998 665444444 55557777888877665554331          1111122333  3434


Q ss_pred             EE-EeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCC-c---ceEE
Q 015490          182 FA-AGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKEN-D---ELFA  256 (406)
Q Consensus       182 l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~-~---~~~~  256 (406)
                      |. ..-.++.+.+||..+.+.+..+.....   ...+++|++.|+.+..++.|.++|..+.+....+.... +   ..+.
T Consensus        99 ly~ltw~~~~v~v~D~~t~~~~~ti~~~~e---G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lN  175 (262)
T 3nol_A           99 IVGLTWKNGLGFVWNIRNLRQVRSFNYDGE---GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELN  175 (262)
T ss_dssp             EEEEESSSSEEEEEETTTCCEEEEEECSSC---CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEE
T ss_pred             EEEEEeeCCEEEEEECccCcEEEEEECCCC---ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccc
Confidence            44 445688999999999998887765332   23334577777777667789999999988887765421 1   1234


Q ss_pred             EEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeec------------CCCeEEEEEcCCCCEEEEEeC
Q 015490          257 SCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVV------------REPVSSFNVSADGKLLAVGTA  320 (406)
Q Consensus       257 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~------------~~~i~~~~~sp~~~~l~~~~~  320 (406)
                      .+.|. ++.      +.+..-.+..|.+.|.++++.+..+...            ......++|+|+++.|++.+.
T Consensus       176 ELe~~-~G~------lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          176 ELEWV-DGE------IFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEEEE-TTE------EEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             eeEEE-CCE------EEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            56676 443      3345566789999999999998888753            135689999998887777665

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.88  E-value=3.8e-06  Score=75.20  Aligned_cols=243  Identities=12%  Similarity=-0.003  Sum_probs=143.5

Q ss_pred             CCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEE-EeeCCCeE
Q 015490          113 SDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFA-AGSENGNL  191 (406)
Q Consensus       113 ~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~~~dg~i  191 (406)
                      .+..+|.+..+ ..+|+.+....  |+.++.....            ..........+..++|++.+..|+ +-...+.|
T Consensus        33 ~d~~~C~~~~~-~~~ll~~~~~~--I~~i~~~g~~------------~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I   97 (349)
T 3v64_C           33 PDRRSCKALGP-EPVLLFANRID--IRQVLPHRSE------------YTLLLNNLENAIALDFHHRRELVFWSDVTLDRI   97 (349)
T ss_dssp             TTSSCEEESSS-CCEEEEECBSC--EEEECTTSCC------------EEEEECSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCCccccccc-CceeEeecccc--eEEEeCCCCe------------eEEeecCCCceEEEEEeccccEEEEEeccCCce
Confidence            44456666666 34555554554  4444443211            111122335578999997655554 44567889


Q ss_pred             EEEeCCCcceEeeeeccCCceeEEEEccCCCEEEE-EeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEE
Q 015490          192 RVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVS-LGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVL  270 (406)
Q Consensus       192 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s-~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  270 (406)
                      ..+++..................+++.+.+..|+. -...+.|.+.++........+. ........+++.|.+..   +
T Consensus        98 ~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-~~l~~P~~iavdp~~g~---l  173 (349)
T 3v64_C           98 LRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW-QSLEKPRAIALHPMEGT---I  173 (349)
T ss_dssp             EEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-TTCSCEEEEEEETTTTE---E
T ss_pred             EEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe-CCCCCcceEEEecCcCe---E
Confidence            99998766543333323335678999876555544 4556789999986543322222 22234578999997764   4


Q ss_pred             EEEEEcCCC-cEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCceEEEEeecccccceEE
Q 015490          271 YIAAITDRG-ASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA-SGDISIIDSSSLQVRTAVKKAHLGIVTA  348 (406)
Q Consensus       271 ~~~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~v~~  348 (406)
                      |++-  ... +.|..+++............-.....++++|++..|+.+.. .+.|..+|+........+. ........
T Consensus       174 y~td--~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~-~~~~~P~g  250 (349)
T 3v64_C          174 YWTD--WGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS-QGLPHPFA  250 (349)
T ss_dssp             EEEE--CSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSSEEE
T ss_pred             EEec--cCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEe-CCCCCceE
Confidence            4433  334 88999988753322222222345689999997777776654 6789999987543332232 23345677


Q ss_pred             EEEcCCCCeEEEEECCCcEEEEEecCCcCC
Q 015490          349 LAFSYDSRALVSASMDSSVRVTVIEDKKKS  378 (406)
Q Consensus       349 ~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~  378 (406)
                      +++ ..+..+++-...+.|...+..+++..
T Consensus       251 iav-~~~~ly~td~~~~~V~~~~~~~G~~~  279 (349)
T 3v64_C          251 ITV-FEDSLYWTDWHTKSINSANKFTGKNQ  279 (349)
T ss_dssp             EEE-ETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred             EEE-ECCEEEEecCCCCeEEEEEccCCCcc
Confidence            887 34555555556777888875566543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.86  E-value=4.1e-06  Score=81.80  Aligned_cols=224  Identities=14%  Similarity=0.145  Sum_probs=137.8

Q ss_pred             CeEEEEEecccccceeecceecccee-------e----ecc---------cccCcEEEEEECCCCCEEEEeeCCC-----
Q 015490          135 SCRLFEWDEVENTEIRRLGVKISEKV-------L----SQL---------ENVGQQLALTFDSEGTIFAAGSENG-----  189 (406)
Q Consensus       135 ~~~i~~~~~~~~~~~~~~~~~~~~~~-------~----~~~---------~~~~~v~~~~~s~~g~~l~~~~~dg-----  189 (406)
                      ...|+-+|..+++....+...+....       +    ...         .+......+++.++..+++.++.++     
T Consensus       177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~  256 (668)
T 1kv9_A          177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR  256 (668)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence            35788888888887776543211000       0    000         0111123468888888888887665     


Q ss_pred             --------------eEEEEeCCCcceEeeeeccC---------CceeEEEEccCCC---EEEEEeCCCCEEEEEcCCCee
Q 015490          190 --------------NLRVFKWPSLEIILNESEAH---------ASVKDLSFSPDGK---FLVSLGNRGPGRVWDLASSAV  243 (406)
Q Consensus       190 --------------~i~vwd~~~~~~~~~~~~~~---------~~i~~~~~s~~~~---~l~s~s~d~~i~iwd~~~~~~  243 (406)
                                    .|..+|.++|+.+..+...+         .+.....+..+|+   .++.++.+|.++++|..+|+.
T Consensus       257 ~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  336 (668)
T 1kv9_A          257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL  336 (668)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence                          49999999999887765431         1222223334665   688899999999999999988


Q ss_pred             eeecccCC-----------cce------------------------EEEEEEEcCCCCceEEEEEEE-------------
Q 015490          244 ATPLAKEN-----------DEL------------------------FASCRFSPLNNEDYVLYIAAI-------------  275 (406)
Q Consensus       244 ~~~~~~~~-----------~~~------------------------~~~~~~~~~~~~~~~l~~~~~-------------  275 (406)
                      +.......           ..+                        ...++++|+...   +|+-..             
T Consensus       337 l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~---~yv~~~~~~~~~~~~~~~~  413 (668)
T 1kv9_A          337 ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGL---VYIPYQEVPGVYRNEGKDF  413 (668)
T ss_dssp             EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTE---EEEEEEECCEEECCCGGGC
T ss_pred             eccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCE---EEEeccccceEeeeecccc
Confidence            74322111           000                        012567776552   332111             


Q ss_pred             --------------------cCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEE
Q 015490          276 --------------------TDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVR  335 (406)
Q Consensus       276 --------------------~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~  335 (406)
                                          ...++.|..||+.+++.+-+...+. ......+...+.++++++.|+.++.||.++++.+
T Consensus       414 ~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l  492 (668)
T 1kv9_A          414 VTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL  492 (668)
T ss_dssp             CCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence                                1134889999999999887776543 2333344456789999999999999999999999


Q ss_pred             EEeecccccceEEEEEcCCCC-eEEEEE
Q 015490          336 TAVKKAHLGIVTALAFSYDSR-ALVSAS  362 (406)
Q Consensus       336 ~~~~~~~~~~v~~~~~sp~~~-~l~s~s  362 (406)
                      ..+.........-+.+..+|+ +++.++
T Consensus       493 ~~~~~~~~~~~~p~~~~~~G~~yva~~~  520 (668)
T 1kv9_A          493 WQFEAQSGIVAAPMTFELAGRQYVAIMA  520 (668)
T ss_dssp             EEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             eEecCCCCcccCceEEEECCEEEEEEEe
Confidence            888632211112344455676 444443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.85  E-value=3.2e-06  Score=76.80  Aligned_cols=207  Identities=12%  Similarity=0.016  Sum_probs=127.9

Q ss_pred             ccCcEEEEEECCCCCE-EEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEE-eCCCCEEEEEcCCCee
Q 015490          166 NVGQQLALTFDSEGTI-FAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSL-GNRGPGRVWDLASSAV  243 (406)
Q Consensus       166 ~~~~v~~~~~s~~g~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-s~d~~i~iwd~~~~~~  243 (406)
                      .......++|.+.+.. +++-...+.|+.++++.......+.........+++.+.+..|+.+ ...+.|.+.++.....
T Consensus       114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~  193 (386)
T 3v65_B          114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR  193 (386)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC
T ss_pred             CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce
Confidence            3356789999975544 4454567889999987665433333233356788998765555544 4567888888864433


Q ss_pred             eeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC-CC
Q 015490          244 ATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA-SG  322 (406)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg  322 (406)
                      ...+. ........+++.|.+..   +|++-. ...+.|..+++............-.....++++|++..|+.+.. .+
T Consensus       194 ~~l~~-~~l~~P~giavdp~~g~---ly~td~-~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~  268 (386)
T 3v65_B          194 KVLLW-QSLEKPRAIALHPMEGT---IYWTDW-GNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHH  268 (386)
T ss_dssp             EEEEC-SSCSCEEEEEEETTTTE---EEEEEC-SSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTT
T ss_pred             EEeec-CCCCCCcEEEEEcCCCe---EEEecc-CCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCC
Confidence            22222 22234578999988774   444332 22378999988754333222222345689999987777776654 67


Q ss_pred             cEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCC
Q 015490          323 DISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSG  379 (406)
Q Consensus       323 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~  379 (406)
                      .|..+|+........+. ........+++ ..+..+++-...+.|..++..+++...
T Consensus       269 ~I~~~d~dG~~~~~~~~-~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~  323 (386)
T 3v65_B          269 VIERANLDGSHRKAVIS-QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQE  323 (386)
T ss_dssp             EEEEECTTSCSCEEEEC-SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCE
T ss_pred             EEEEEeCCCCeeEEEEE-CCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceE
Confidence            89999987543332332 23345677888 345555666667788888866665443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.82  E-value=5.1e-06  Score=76.56  Aligned_cols=238  Identities=9%  Similarity=0.035  Sum_probs=137.4

Q ss_pred             CceEEEEcc-CCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeC-CC---
Q 015490          115 LPYRMAIHP-HGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE-NG---  189 (406)
Q Consensus       115 ~v~~~~~sp-~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg---  189 (406)
                      .+..|+++| ++..|+++..+ .+|+.++.......            ...........++|+++|+.|+++.. ++   
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~------------~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~  204 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVS------------TVYSGLSKVRTICWTHEADSMIITNDQNNNDR  204 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEEE------------EEECCCSCEEEEEECTTSSEEEEEECCSCTTS
T ss_pred             CCCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEEE------------EEecCCCCcceEEEeCCCCEEEEEeCCCCccc
Confidence            567889998 45666666533 57777776432211            11113356789999999996666544 11   


Q ss_pred             -eEEEEeCCCcceE--eeeeccCCceeEEEEcc-CCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCC
Q 015490          190 -NLRVFKWPSLEII--LNESEAHASVKDLSFSP-DGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNN  265 (406)
Q Consensus       190 -~i~vwd~~~~~~~--~~~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (406)
                       .+.+++. .+...  ..+. .......++++| ++.++++-..++.|..++..++................++|+|+++
T Consensus       205 ~~v~~~~~-~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~  282 (430)
T 3tc9_A          205 PNNYILTR-ESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGN  282 (430)
T ss_dssp             EEEEEEEG-GGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSS
T ss_pred             ceEEEEeC-CCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCC
Confidence             3444443 33221  1222 223467899999 6766666667788999999876642222222223456899999998


Q ss_pred             CceEEEEEEEcCCCcEEEEEeCCC--ceE--EEEeeec---------------CCCeE-EEEEc--------CCCCEEEE
Q 015490          266 EDYVLYIAAITDRGASIVTWNTTT--WKR--IRTKQVV---------------REPVS-SFNVS--------ADGKLLAV  317 (406)
Q Consensus       266 ~~~~l~~~~~~~~~~~i~~~d~~~--~~~--~~~~~~~---------------~~~i~-~~~~s--------p~~~~l~~  317 (406)
                      .     +..+....+.|..++...  ++.  ...+.+.               -.... .++..        ++|.+.++
T Consensus       283 ~-----lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyva  357 (430)
T 3tc9_A          283 Y-----AYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFC  357 (430)
T ss_dssp             E-----EEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEE
T ss_pred             E-----EEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEE
Confidence            4     334445678888877642  221  1222211               01123 45543        34555555


Q ss_pred             EeCCCcEEEEECCCceEEEEeecc---c----c---------cceEEEEEcCC-CCeEEEEECCCcEEEEEec
Q 015490          318 GTASGDISIIDSSSLQVRTAVKKA---H----L---------GIVTALAFSYD-SRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       318 ~~~dg~i~i~d~~~~~~~~~~~~~---~----~---------~~v~~~~~sp~-~~~l~s~s~dg~i~iw~~~  373 (406)
                      -...+.|+.++. ++......-.+   .    .         .....++++|+ +.++++-..++.|+.++++
T Consensus       358 D~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          358 DRENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EGGGTEEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             ECCCcEEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            455678898884 45544333210   0    1         14789999994 6666666667888888765

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.82  E-value=3.8e-07  Score=90.42  Aligned_cols=196  Identities=10%  Similarity=0.014  Sum_probs=112.0

Q ss_pred             CceEEEEc-cCCCeEEEEec--C--CeEEEEEecccc-cceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCC
Q 015490          115 LPYRMAIH-PHGDGIICALQ--N--SCRLFEWDEVEN-TEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSEN  188 (406)
Q Consensus       115 ~v~~~~~s-p~~~~l~~~~~--~--~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  188 (406)
                      .+...+|| |||++|+.+.+  +  ...||.++..++ +....           .+.  .....++|+|||+.|+....+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-----------~~~--~~~~~~~WspDg~~l~y~~~d  241 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-----------KVS--GTNGEIVWGPDHTSLFYVTKD  241 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-----------CEE--EECSCCEECSSTTEEEEEEEC
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-----------ccc--CceeeEEEecCCCEEEEEEEC
Confidence            67889999 99999987753  2  246888887765 32110           000  112367899999888877665


Q ss_pred             -----CeEEEEeCCCcce--Eeeeec-cCCceeEEEEccCCCEEEEEeC---CCCEEEEEcCCCe-ee--eecccCCcce
Q 015490          189 -----GNLRVFKWPSLEI--ILNESE-AHASVKDLSFSPDGKFLVSLGN---RGPGRVWDLASSA-VA--TPLAKENDEL  254 (406)
Q Consensus       189 -----g~i~vwd~~~~~~--~~~~~~-~~~~i~~~~~s~~~~~l~s~s~---d~~i~iwd~~~~~-~~--~~~~~~~~~~  254 (406)
                           ..|+++++.++..  ...+.. .......+.|+|||++|+..+.   ...|+++|+.++. ..  ..+.......
T Consensus       242 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~  321 (751)
T 2xe4_A          242 ETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGV  321 (751)
T ss_dssp             TTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTC
T ss_pred             CCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCc
Confidence                 3688888877642  222222 2234567899999998887653   3458888987752 22  3333333333


Q ss_pred             EEEEEEEcCCCCceEEEEEEEcC--CCcEEEEEeCCCceEEEE-eeecCC--CeEEEEEcCCCCEE-EEEeCCCc--EEE
Q 015490          255 FASCRFSPLNNEDYVLYIAAITD--RGASIVTWNTTTWKRIRT-KQVVRE--PVSSFNVSADGKLL-AVGTASGD--ISI  326 (406)
Q Consensus       255 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~i~~~d~~~~~~~~~-~~~~~~--~i~~~~~sp~~~~l-~~~~~dg~--i~i  326 (406)
                      ..++.|+. +..   +++....+  ....|..+|+.+...... +..+..  .+..+.+.  ++.| ++...++.  |.+
T Consensus       322 ~~s~~~~~-g~~---l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~  395 (751)
T 2xe4_A          322 RYDVQMHG-TSH---LVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWT  395 (751)
T ss_dssp             CEEEEEET-TTE---EEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEE
T ss_pred             eEEEeeee-CCE---EEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEE
Confidence            34444433 443   33333221  346888888875311122 222332  34455554  4444 45555665  566


Q ss_pred             EEC
Q 015490          327 IDS  329 (406)
Q Consensus       327 ~d~  329 (406)
                      +++
T Consensus       396 ~dl  398 (751)
T 2xe4_A          396 MMA  398 (751)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            675

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.82  E-value=2.3e-07  Score=92.01  Aligned_cols=195  Identities=10%  Similarity=0.063  Sum_probs=115.4

Q ss_pred             cEEEEEEC-CCCCEEEEeeC-C----CeEEEEeCCCc-ceEeeeeccCCceeEEEEccCCCEEEEEeCC-----CCEEEE
Q 015490          169 QQLALTFD-SEGTIFAAGSE-N----GNLRVFKWPSL-EIILNESEAHASVKDLSFSPDGKFLVSLGNR-----GPGRVW  236 (406)
Q Consensus       169 ~v~~~~~s-~~g~~l~~~~~-d----g~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d-----~~i~iw  236 (406)
                      .+...+|| |||++||.+.. +    .+|+++|+.++ +.+....  ......++|+|||+.|+....+     ..|+++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~--~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~  252 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV--SGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH  252 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE--EEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc--cCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence            56789999 99998886543 2    35999999988 6321111  1124578999999988887765     257888


Q ss_pred             EcCCCeee--eecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCce-EE--EEee-ecCCCeEEEEEcC
Q 015490          237 DLASSAVA--TPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK-RI--RTKQ-VVREPVSSFNVSA  310 (406)
Q Consensus       237 d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~-~~--~~~~-~~~~~i~~~~~sp  310 (406)
                      ++.++...  ..+..........+.|+|+++.   +++.........|+++|+.++. ..  ..+. .......++.|+.
T Consensus       253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~---l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~  329 (751)
T 2xe4_A          253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNT---LCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG  329 (751)
T ss_dssp             ETTSCGGGCEEEEECCCTTCEEEEEECTTSSE---EEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET
T ss_pred             ECCCCchhcEEEEecCCCceEEEEEECCCCCE---EEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee
Confidence            88776422  2222222234567899999985   3344444456789999998752 12  3332 2234455666554


Q ss_pred             CCCEEEEEe-CC----CcEEEEECCCc-eEEE-Eeeccccc--ceEEEEEcCCCCeEEEEECCCcEEEEEe
Q 015490          311 DGKLLAVGT-AS----GDISIIDSSSL-QVRT-AVKKAHLG--IVTALAFSYDSRALVSASMDSSVRVTVI  372 (406)
Q Consensus       311 ~~~~l~~~~-~d----g~i~i~d~~~~-~~~~-~~~~~~~~--~v~~~~~sp~~~~l~s~s~dg~i~iw~~  372 (406)
                       |+.|+..+ .+    ..|..+|+.+. .... .+.  +..  .+..+.+. .+.++++...++..++|-+
T Consensus       330 -g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~--~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~  396 (751)
T 2xe4_A          330 -TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVD--HSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTM  396 (751)
T ss_dssp             -TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEEC--CCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEE
T ss_pred             -CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEEC--CCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence             55554443 33    25777777652 2222 232  332  34556655 2345566677776555443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.81  E-value=4.7e-07  Score=86.66  Aligned_cols=241  Identities=12%  Similarity=0.044  Sum_probs=145.6

Q ss_pred             CCeEEEEecCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCCEEEEeeC------CCeEEEEeCC
Q 015490          125 GDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIFAAGSE------NGNLRVFKWP  197 (406)
Q Consensus       125 ~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~------dg~i~vwd~~  197 (406)
                      +..++++.. ..+|+-+|..+++...........   ...... .++    .. ++ .+++++.      ++.|..+|..
T Consensus       115 ~~~v~v~~~-dg~l~alD~~tG~~~W~~~~~~~~---~~~~~~~~P~----v~-~g-~v~vg~~~~~~~~~g~v~a~D~~  184 (571)
T 2ad6_A          115 AGQIVKKQA-NGHLLALDAKTGKINWEVEVCDPK---VGSTLTQAPF----VA-KD-TVLMGCSGAELGVRGAVNAFDLK  184 (571)
T ss_dssp             TTEEEEECT-TSEEEEEETTTCCEEEEEECCCGG---GTCBCCSCCE----EE-TT-EEEEECBCGGGTCCCEEEEEETT
T ss_pred             CCEEEEEeC-CCEEEEEECCCCCEEEEecCCCCC---ccceeccCCE----EE-CC-EEEEEecCCccCCCCEEEEEECC
Confidence            445555542 236777888888777664432100   000000 111    11 34 4555544      7899999999


Q ss_pred             CcceEeeeeccCCc--------------------------------------eeEEEEccCCCEEEEEeCC---------
Q 015490          198 SLEIILNESEAHAS--------------------------------------VKDLSFSPDGKFLVSLGNR---------  230 (406)
Q Consensus       198 ~~~~~~~~~~~~~~--------------------------------------i~~~~~s~~~~~l~s~s~d---------  230 (406)
                      +|+.+..+......                                      ...+++.++...++.++.+         
T Consensus       185 tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~  264 (571)
T 2ad6_A          185 TGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMR  264 (571)
T ss_dssp             TCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGS
T ss_pred             CCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCcc
Confidence            99987665432110                                      0235666766677666532         


Q ss_pred             -------CCEEEEEcCCCeeeeecccCC---------cceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEE
Q 015490          231 -------GPGRVWDLASSAVATPLAKEN---------DELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIR  294 (406)
Q Consensus       231 -------~~i~iwd~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~  294 (406)
                             +.|..+|.++|+.+-.+....         ..++ .+....+++.   ..++..++.+|.++++|..+++.+.
T Consensus       265 ~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~---~~~v~~~~~~G~l~~lD~~tG~~~w  340 (571)
T 2ad6_A          265 PGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKM---TPLLSHIDRNGILYTLNRENGNLIV  340 (571)
T ss_dssp             CSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEE---EEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcE---EEEEEEeCCCcEEEEEECCCCCEEe
Confidence                   258999999998876654321         1111 1222235531   1134456788999999999999877


Q ss_pred             EeeecC-------------CCe--------------------------EEEEEcCCCCEEEEEe----------------
Q 015490          295 TKQVVR-------------EPV--------------------------SSFNVSADGKLLAVGT----------------  319 (406)
Q Consensus       295 ~~~~~~-------------~~i--------------------------~~~~~sp~~~~l~~~~----------------  319 (406)
                      ......             .++                          ..++++|+..++++.+                
T Consensus       341 ~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~  420 (571)
T 2ad6_A          341 AEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRA  420 (571)
T ss_dssp             EEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCT
T ss_pred             eecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhcccccccccccccc
Confidence            654321             011                          2467888877777654                


Q ss_pred             ---------------------CCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCC
Q 015490          320 ---------------------ASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKS  378 (406)
Q Consensus       320 ---------------------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~  378 (406)
                                           .+|.|..||+.+++.+-++.  +...+.+..+...+..++.++.|+.|+.||.++++.+
T Consensus       421 g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~--~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~l  498 (571)
T 2ad6_A          421 GQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKW--EKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL  498 (571)
T ss_dssp             TSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEE--ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEec--CCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEE
Confidence                                 24789999999999887775  2233333233334567777899999999999999876


Q ss_pred             CCc
Q 015490          379 GGL  381 (406)
Q Consensus       379 ~~~  381 (406)
                      -++
T Consensus       499 w~~  501 (571)
T 2ad6_A          499 WNF  501 (571)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            444

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.81  E-value=2.1e-06  Score=82.15  Aligned_cols=247  Identities=9%  Similarity=0.026  Sum_probs=147.0

Q ss_pred             EEEccCCCe----EEEEecCCeEEEEEecccccceeecceeccceeeeccccc-CcEEEEEECCCCCEEEEee------C
Q 015490          119 MAIHPHGDG----IICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV-GQQLALTFDSEGTIFAAGS------E  187 (406)
Q Consensus       119 ~~~sp~~~~----l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~------~  187 (406)
                      ++++|.+..    ++++.. ..+|+-+|..+++...+........   ..... .++    + .++ .+++++      .
T Consensus       111 ~av~p~~g~~~~rV~v~t~-dg~l~AlDa~TG~~~W~~~~~~~~~---~~~~~ssP~----v-~~g-~V~vg~~g~e~g~  180 (599)
T 1w6s_A          111 LAYWPGDGKTPALILKTQL-DGNVAALNAETGETVWKVENSDIKV---GSTLTIAPY----V-VKD-KVIIGSSGAELGV  180 (599)
T ss_dssp             CEEECCCSSSCCEEEEECT-TSEEEEEETTTCCEEEEEECCCGGG---TCBCCSCCE----E-ETT-EEEECCBCGGGTC
T ss_pred             eEEEecCCcceeEEEEEcC-CCEEEEEECCCCCEEEeecCCCCCc---cceeecCCE----E-ECC-EEEEEecccccCC
Confidence            455444444    666542 2377788888887776644321000   00000 111    1 134 455554      3


Q ss_pred             CCeEEEEeCCCcceEeeeeccCCc-------------------------------------e-eEEEEccCCCEEEEEeC
Q 015490          188 NGNLRVFKWPSLEIILNESEAHAS-------------------------------------V-KDLSFSPDGKFLVSLGN  229 (406)
Q Consensus       188 dg~i~vwd~~~~~~~~~~~~~~~~-------------------------------------i-~~~~~s~~~~~l~s~s~  229 (406)
                      +|.|+.+|.++|+.+..+......                                     + ..+++.++..+++.++.
T Consensus       181 ~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g  260 (599)
T 1w6s_A          181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTG  260 (599)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred             CCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCC
Confidence            799999999999987665432211                                     0 13456667777777765


Q ss_pred             C----------------CCEEEEEcCCCeeeeecccCCc---------ceEEEEEEE-cCCCCceEEEEEEEcCCCcEEE
Q 015490          230 R----------------GPGRVWDLASSAVATPLAKEND---------ELFASCRFS-PLNNEDYVLYIAAITDRGASIV  283 (406)
Q Consensus       230 d----------------~~i~iwd~~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~i~  283 (406)
                      +                +.|..+|.++|+..-.+...+.         .++ .+... .+++.   .-+++.++.+|.++
T Consensus       261 ~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~-l~d~~~~~G~~---~~~v~~~~~~G~l~  336 (599)
T 1w6s_A          261 NPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMM-LSEQKDKDGKA---RKLLTHPDRNGIVY  336 (599)
T ss_dssp             CCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEECTTSCE---EEEEEEECTTSEEE
T ss_pred             CCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccE-EEeccccCCcE---EEEEEEECCCcEEE
Confidence            5                3799999999988766554321         111 12222 34531   11344567899999


Q ss_pred             EEeCCCceEEEEeeecC-------------CC--------------------------eEEEEEcCCCCEEEEEe-----
Q 015490          284 TWNTTTWKRIRTKQVVR-------------EP--------------------------VSSFNVSADGKLLAVGT-----  319 (406)
Q Consensus       284 ~~d~~~~~~~~~~~~~~-------------~~--------------------------i~~~~~sp~~~~l~~~~-----  319 (406)
                      ++|.++++.+.......             .+                          -..++++|+.+++++..     
T Consensus       337 ~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~  416 (599)
T 1w6s_A          337 TLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICM  416 (599)
T ss_dssp             EEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEE
T ss_pred             EEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccce
Confidence            99999999877654221             01                          12456777766665431     


Q ss_pred             ----------------------------------CCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCC
Q 015490          320 ----------------------------------ASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDS  365 (406)
Q Consensus       320 ----------------------------------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg  365 (406)
                                                        .+|.|..||+.+++.+-...  +..+...-.....+.+++.++.|+
T Consensus       417 ~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~--~~~~~~~g~~~tagg~vf~gt~dg  494 (599)
T 1w6s_A          417 DWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKM--ERFAVWGGTMATAGDLVFYGTLDG  494 (599)
T ss_dssp             EEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEE--ESSCCCSBCEEETTTEEEEECTTS
T ss_pred             eeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEec--CCCCccCcceEecCCEEEEECCCC
Confidence                                              34789999999998877764  222222111223466777899999


Q ss_pred             cEEEEEecCCcCCCCc
Q 015490          366 SVRVTVIEDKKKSGGL  381 (406)
Q Consensus       366 ~i~iw~~~~~~~~~~~  381 (406)
                      .++.||.++++.+-++
T Consensus       495 ~l~A~D~~tG~~lW~~  510 (599)
T 1w6s_A          495 YLKARDSDTGDLLWKF  510 (599)
T ss_dssp             EEEEEETTTCCEEEEE
T ss_pred             eEEEEECCCCCEEEEe
Confidence            9999999999876444

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.80  E-value=2.4e-06  Score=75.07  Aligned_cols=201  Identities=14%  Similarity=0.093  Sum_probs=122.2

Q ss_pred             eecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCC--CEEEEEc
Q 015490          161 LSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRG--PGRVWDL  238 (406)
Q Consensus       161 ~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~--~i~iwd~  238 (406)
                      +..+........++|+++|+++++-..++.|..||.... ..... ........+++.++|+++++.....  .|..+|.
T Consensus        25 ~~~~p~~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~-~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~  102 (306)
T 2p4o_A           25 ITSFPVNTFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHA-TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVK  102 (306)
T ss_dssp             EEEECTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEE-ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred             eEeCCCCCCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEE-eCCCCceeEEEcCCCcEEEEeccCCcceEEEEcC
Confidence            333433456778999999997777667899999997653 33222 2234688999999999655544332  4667777


Q ss_pred             CCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceE-EEEee---------ecCCCeEEEEE
Q 015490          239 ASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKR-IRTKQ---------VVREPVSSFNV  308 (406)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~-~~~~~---------~~~~~i~~~~~  308 (406)
                      .+++...............++..+.+.    +  .++...++.|+.+|..+++. +....         ..-.....+  
T Consensus       103 ~~g~~~~~~~~~~~~~~~g~~~~~~~~----~--~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--  174 (306)
T 2p4o_A          103 SDGTVETLLTLPDAIFLNGITPLSDTQ----Y--LTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--  174 (306)
T ss_dssp             TTSCEEEEEECTTCSCEEEEEESSSSE----E--EEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--
T ss_pred             CCCeEEEEEeCCCccccCcccccCCCc----E--EEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--
Confidence            777654322211222233444433332    2  23334578999999876432 21111         011234455  


Q ss_pred             cCCCCEEEEEeC-CCcEEEEECCC-ceE--EEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490          309 SADGKLLAVGTA-SGDISIIDSSS-LQV--RTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       309 sp~~~~l~~~~~-dg~i~i~d~~~-~~~--~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~  373 (406)
                      +|++++|+++.. .+.|..|++.. ++.  ...+.  .......++++++|+++++....+.|.+++..
T Consensus       175 s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~--~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~  241 (306)
T 2p4o_A          175 KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV--EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD  241 (306)
T ss_dssp             EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE--ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe--ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence            788887766654 67899999874 321  11221  11345678999999887777777889999864

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.79  E-value=1.4e-05  Score=70.45  Aligned_cols=205  Identities=11%  Similarity=-0.023  Sum_probs=124.3

Q ss_pred             cCcEEEEEECCCCCEE-EEeeCCCeEEEEeCCC---cceEeeee-ccCCceeEEEEccCCCEEEEE-eCCCCEEEEEcCC
Q 015490          167 VGQQLALTFDSEGTIF-AAGSENGNLRVFKWPS---LEIILNES-EAHASVKDLSFSPDGKFLVSL-GNRGPGRVWDLAS  240 (406)
Q Consensus       167 ~~~v~~~~~s~~g~~l-~~~~~dg~i~vwd~~~---~~~~~~~~-~~~~~i~~~~~s~~~~~l~s~-s~d~~i~iwd~~~  240 (406)
                      ......++|++++..| ++-..++.|..+++..   +.....+. ..-.....+++.+.+..|+.+ ...+.|.++++..
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g  108 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence            3567889999866544 4545568999999875   12222222 222356889998755555544 5678899999865


Q ss_pred             CeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEe-eecCCCeEEEEEcCCCCEEEEEe
Q 015490          241 SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTK-QVVREPVSSFNVSADGKLLAVGT  319 (406)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~i~~~~~sp~~~~l~~~~  319 (406)
                      ......+. ........+++.|.+..   +|++-. +..+.|...++.... ...+ ...-.....++++|++..|+.+.
T Consensus       109 ~~~~~~~~-~~~~~P~~iavdp~~g~---ly~~d~-~~~~~I~~~~~dG~~-~~~~~~~~~~~P~gla~d~~~~~lY~~D  182 (316)
T 1ijq_A          109 VKRKTLFR-ENGSKPRAIVVDPVHGF---MYWTDW-GTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLYWVD  182 (316)
T ss_dssp             SSEEEEEE-CTTCCEEEEEEETTTTE---EEEEEC-SSSCEEEEEETTSCC-EEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred             CceEEEEE-CCCCCcceEEeCCCCCE---EEEEcc-CCCCeEEEEcCCCCC-eEEEEECCCCCceEEEEeccCCEEEEEE
Confidence            43322222 12234678999997764   444432 223789888886433 2222 22234578999999887777665


Q ss_pred             C-CCcEEEEECCCceEEEEeecc--cccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCC
Q 015490          320 A-SGDISIIDSSSLQVRTAVKKA--HLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSG  379 (406)
Q Consensus       320 ~-dg~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~  379 (406)
                      . .+.|..+|+..... ..+...  .......+++. .+..+++-...+.|..++..+++.+.
T Consensus       183 ~~~~~I~~~d~dg~~~-~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~  243 (316)
T 1ijq_A          183 SKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVN  243 (316)
T ss_dssp             TTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCE
T ss_pred             CCCCeEEEEecCCCce-EEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceE
Confidence            4 67899999874332 222211  22345677775 35555666667889888887776543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.72  E-value=4.6e-05  Score=68.09  Aligned_cols=209  Identities=8%  Similarity=-0.025  Sum_probs=125.9

Q ss_pred             CCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCC-CEEEEeeCCCe
Q 015490          112 DSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEG-TIFAAGSENGN  190 (406)
Q Consensus       112 h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~  190 (406)
                      ....+..++|.+.+..|+.+.-..-+|+.++.........+           .........+++.+.+ .++++-...+.
T Consensus        71 ~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~-----------~~~~~~p~glavd~~~g~ly~~d~~~~~  139 (349)
T 3v64_C           71 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV-----------STGLESPGGLAVDWVHDKLYWTDSGTSR  139 (349)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-----------CSSCSCCCEEEEETTTTEEEEEETTTTE
T ss_pred             CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE-----------eCCCCCccEEEEecCCCeEEEEcCCCCe
Confidence            34557899999888888777633447777776533211110           0112344678888754 45555556789


Q ss_pred             EEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEe-CC-CCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCce
Q 015490          191 LRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLG-NR-GPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDY  268 (406)
Q Consensus       191 i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (406)
                      |.+.+++...........-.....++++|.+..|+.+. .. +.|..+++.... ...+....-.....++++|++..  
T Consensus       140 I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~PnGla~d~~~~~--  216 (349)
T 3v64_C          140 IEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRR--  216 (349)
T ss_dssp             EEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEESCCSSCSCEEEEEEETTTTE--
T ss_pred             EEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCCcceEEEeCCCCE--
Confidence            99999865443322323334678999999766666554 33 678888876433 23332222334678999998775  


Q ss_pred             EEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEe
Q 015490          269 VLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAV  338 (406)
Q Consensus       269 ~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~  338 (406)
                       +|++  ....+.|..+|+........+.........+++. ++...++-...+.|..++..+++....+
T Consensus       217 -lY~a--D~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i  282 (349)
T 3v64_C          217 -MYWV--DAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEII  282 (349)
T ss_dssp             -EEEE--ETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             -EEEE--ECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEe
Confidence             4433  4557899999987543322232233456788883 4444444445778888886666554444

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.72  E-value=1.2e-05  Score=74.16  Aligned_cols=241  Identities=14%  Similarity=0.068  Sum_probs=137.7

Q ss_pred             CCceEEEEccC--CCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCC---
Q 015490          114 DLPYRMAIHPH--GDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSEN---  188 (406)
Q Consensus       114 ~~v~~~~~sp~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d---  188 (406)
                      ..+..++|.|+  ...|+++... -+|+.++..++....            ..........++|+++|+++++....   
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~------------~~~~~~~P~giavd~dG~lyVad~~~~~~  205 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDI------------KTTNIGQCADVNFTLNGDMVVVDDQSSDT  205 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEE------------ECCCCSCEEEEEECTTCCEEEEECCSCTT
T ss_pred             CCCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEE------------eecCCCCccEEEECCCCCEEEEcCCCCcc
Confidence            35679999984  4455555422 466666654332211            11133567899999999954443311   


Q ss_pred             C-eEEEEeCCCcceEeeeeccCCceeEEEEcc-CCCEEEEEeCCCCEEEEEcCCCeeeeec-ccCCcceEEEEEEEcCCC
Q 015490          189 G-NLRVFKWPSLEIILNESEAHASVKDLSFSP-DGKFLVSLGNRGPGRVWDLASSAVATPL-AKENDELFASCRFSPLNN  265 (406)
Q Consensus       189 g-~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  265 (406)
                      . .+...+...+...............++++| ++.+.++-..++.|+.+|..++.....+ ..........++|+|+++
T Consensus       206 ~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~  285 (433)
T 4hw6_A          206 NTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGD  285 (433)
T ss_dssp             SEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSS
T ss_pred             cceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCC
Confidence            1 233333221111001111223457789999 6665555556778999998877652222 211122234699999998


Q ss_pred             CceEEEEEEEcCCCcEEEEEeCC--CceE--EEEeeec---------------CCCeEEEEE---------cCCCCEEEE
Q 015490          266 EDYVLYIAAITDRGASIVTWNTT--TWKR--IRTKQVV---------------REPVSSFNV---------SADGKLLAV  317 (406)
Q Consensus       266 ~~~~l~~~~~~~~~~~i~~~d~~--~~~~--~~~~~~~---------------~~~i~~~~~---------sp~~~~l~~  317 (406)
                      .   +  ..+....+.|+.++..  ++..  ...+.+.               -.....+++         .++|++.++
T Consensus       286 ~---L--Yvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyva  360 (433)
T 4hw6_A          286 W---A--YIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFC  360 (433)
T ss_dssp             E---E--EEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEE
T ss_pred             E---E--EEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEE
Confidence            4   3  3444567889997764  3321  1122221               123567999         677776666


Q ss_pred             EeCCCcEEEEECCCceEEEEeeccc----------------ccceEEEEEc-CCCCeEEEEECCCcEEEEEec
Q 015490          318 GTASGDISIIDSSSLQVRTAVKKAH----------------LGIVTALAFS-YDSRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       318 ~~~dg~i~i~d~~~~~~~~~~~~~~----------------~~~v~~~~~s-p~~~~l~s~s~dg~i~iw~~~  373 (406)
                      -...+.|+.++. ++......-.+.                -.....++++ ++|.++++-..+++|+..+++
T Consensus       361 D~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          361 DRDSHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             ETTTTEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             ECCCCEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            666788999985 454433221110                1236789999 677777766677889888875

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.71  E-value=5.5e-07  Score=75.55  Aligned_cols=160  Identities=16%  Similarity=0.137  Sum_probs=116.7

Q ss_pred             ceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc
Q 015490          211 SVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW  290 (406)
Q Consensus       211 ~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~  290 (406)
                      ....+.|+ ++.+..+.+.+|.|+++|+++++....+ ......-..++  +.+..   +|.  ..-.++.+.+||..+.
T Consensus        56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit--~~g~~---Ly~--ltw~~~~v~V~D~~Tl  126 (268)
T 3nok_A           56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLA--SDGER---LYQ--LTWTEGLLFTWSGMPP  126 (268)
T ss_dssp             CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEE--ECSSC---EEE--EESSSCEEEEEETTTT
T ss_pred             ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEE--EeCCE---EEE--EEccCCEEEEEECCcC
Confidence            45788887 4566777778889999999999988877 43332222343  44554   333  3457899999999999


Q ss_pred             eEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecc-cc---cceEEEEEcCCCCeEEEEECCCc
Q 015490          291 KRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKA-HL---GIVTALAFSYDSRALVSASMDSS  366 (406)
Q Consensus       291 ~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~---~~v~~~~~sp~~~~l~s~s~dg~  366 (406)
                      +.+.++...... ..++  +|++.|+.+..++.|.++|..+.+.+..+.-. +.   ..++.+.|. +|+..+..-.+..
T Consensus       127 ~~~~ti~~~~eG-wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~  202 (268)
T 3nok_A          127 QRERTTRYSGEG-WGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSD  202 (268)
T ss_dssp             EEEEEEECSSCC-CCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSE
T ss_pred             cEEEEEeCCCce-eEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCe
Confidence            999998865332 3444  66888888877899999999999988887521 22   235677887 7766655556789


Q ss_pred             EEEEEecCCcCCCCchH
Q 015490          367 VRVTVIEDKKKSGGLNL  383 (406)
Q Consensus       367 i~iw~~~~~~~~~~~~~  383 (406)
                      |.+-|.++++.++.+++
T Consensus       203 I~vIDp~TG~V~~~Idl  219 (268)
T 3nok_A          203 VLEIDPATGTVVGVIDA  219 (268)
T ss_dssp             EEEECTTTCBEEEEEEC
T ss_pred             EEEEeCCCCcEEEEEEC
Confidence            99999999998888776

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.71  E-value=2.7e-05  Score=70.70  Aligned_cols=211  Identities=7%  Similarity=-0.036  Sum_probs=127.6

Q ss_pred             cCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCC-CEEEEeeCCC
Q 015490          111 TDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEG-TIFAAGSENG  189 (406)
Q Consensus       111 ~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg  189 (406)
                      .....+..++|.+.+..|+.+....-+|+.++.........+           .........+++.+.+ .++++-...+
T Consensus       113 ~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~-----------~~~~~~p~glavd~~~g~lY~~d~~~~  181 (386)
T 3v65_B          113 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV-----------STGLESPGGLAVDWVHDKLYWTDSGTS  181 (386)
T ss_dssp             CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE-----------CSSCSCCCCEEEETTTTEEEEEETTTT
T ss_pred             cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE-----------eCCCCCccEEEEEeCCCeEEEEcCCCC
Confidence            344567899999888777777634447777776533211110           0111234567888754 4445555577


Q ss_pred             eEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeC-C-CCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCc
Q 015490          190 NLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGN-R-GPGRVWDLASSAVATPLAKENDELFASCRFSPLNNED  267 (406)
Q Consensus       190 ~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~-d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (406)
                      .|.+.+++.......+.........+++.|.+..|+.+.. . +.|..+++.......... ..-.....++++|++.. 
T Consensus       182 ~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-~~~~~PnGlavd~~~~~-  259 (386)
T 3v65_B          182 RIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD-THLFWPNGLTIDYAGRR-  259 (386)
T ss_dssp             EEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SSCSCEEEEEEEGGGTE-
T ss_pred             eEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE-CCCCCeeeEEEeCCCCE-
Confidence            8999988654433333333346789999997776666543 3 678888875433222222 22234678999988775 


Q ss_pred             eEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEee
Q 015490          268 YVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVK  339 (406)
Q Consensus       268 ~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  339 (406)
                        +|+  +....+.|..+|+........+.........+++. .+..+++-...+.|..++..+++....+.
T Consensus       260 --lY~--aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          260 --MYW--VDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             --EEE--EETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             --EEE--EECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence              443  34567899999987543333333233456788883 44445555557889999976776655554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.71  E-value=8.6e-06  Score=72.03  Aligned_cols=186  Identities=14%  Similarity=0.106  Sum_probs=116.5

Q ss_pred             cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeec--------------------cCCceeEEEEcc-CCCEEEEE
Q 015490          169 QQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESE--------------------AHASVKDLSFSP-DGKFLVSL  227 (406)
Q Consensus       169 ~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~--------------------~~~~i~~~~~s~-~~~~l~s~  227 (406)
                      ...+++|+++|++++++..++.|..|+..+++... +..                    ....+..+++.+ +++ |+.+
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~   97 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV   97 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence            34578899999878888889999999987654332 210                    012478899997 554 5556


Q ss_pred             eCCCCEEEEEcCCCeeeeecc---cCCcceEEEEEEEc-CCCCceEEEEEEEc---------------CCCcEEEEEeCC
Q 015490          228 GNRGPGRVWDLASSAVATPLA---KENDELFASCRFSP-LNNEDYVLYIAAIT---------------DRGASIVTWNTT  288 (406)
Q Consensus       228 s~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~l~~~~~~---------------~~~~~i~~~d~~  288 (406)
                      ...+.+..+|..++.......   .........+++.+ ++.    +|+....               ...+.|..+|..
T Consensus        98 d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~----l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  173 (322)
T 2fp8_A           98 DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI----VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS  173 (322)
T ss_dssp             ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCC----EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred             ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCE----EEEECCcccccccccceehcccCCCceEEEEeCC
Confidence            555568888877554221111   11112356789999 775    3333222               124789999988


Q ss_pred             CceEEEEeeecCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCce--EEEEeecccccceEEEEEcCCCCeEEEEEC
Q 015490          289 TWKRIRTKQVVREPVSSFNVSADGKLLAVG-TASGDISIIDSSSLQ--VRTAVKKAHLGIVTALAFSYDSRALVSASM  363 (406)
Q Consensus       289 ~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~-~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~  363 (406)
                      +++........ .....++++|+|+.|+++ +..+.|.+|++....  ....+.. ..+ ...+++.++|+++++...
T Consensus       174 ~~~~~~~~~~~-~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          174 TKETTLLLKEL-HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             TTEEEEEEEEE-SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSCEEEEEEE
T ss_pred             CCEEEEeccCC-ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCCEEEEecC
Confidence            76643322222 234679999999977666 446889999987421  1112211 223 778999999987776544

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.69  E-value=2.6e-06  Score=70.88  Aligned_cols=161  Identities=16%  Similarity=0.097  Sum_probs=114.5

Q ss_pred             ceeEEEEccCCCEEEEEeCC--CCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC
Q 015490          211 SVKDLSFSPDGKFLVSLGNR--GPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT  288 (406)
Q Consensus       211 ~i~~~~~s~~~~~l~s~s~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~  288 (406)
                      ....+.|++ +.+..+.+.+  ..|+.+|+.+++....+.......-..++..  +.+   +|.+  .-.++.+.+||..
T Consensus        22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~---ly~l--tw~~~~v~v~D~~   93 (243)
T 3mbr_X           22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDR---LIQL--TWRNHEGFVYDLA   93 (243)
T ss_dssp             CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTE---EEEE--ESSSSEEEEEETT
T ss_pred             ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCE---EEEE--EeeCCEEEEEECC
Confidence            567899986 5555565654  4899999999999887765443322334443  443   4433  4678999999999


Q ss_pred             CceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecc-cc---cceEEEEEcCCCCeEEEEECC
Q 015490          289 TWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKA-HL---GIVTALAFSYDSRALVSASMD  364 (406)
Q Consensus       289 ~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~---~~v~~~~~sp~~~~l~s~s~d  364 (406)
                      +.+.+.++...... ..++  ++++.|+++..++.|.++|..+.+.+..+.-. +.   ..++.+.|. +|+.++..-.+
T Consensus        94 tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s  169 (243)
T 3mbr_X           94 TLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLT  169 (243)
T ss_dssp             TTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTT
T ss_pred             cCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCC
Confidence            99999998865433 3444  56777777777889999999999988887522 11   245667776 67666555567


Q ss_pred             CcEEEEEecCCcCCCCchH
Q 015490          365 SSVRVTVIEDKKKSGGLNL  383 (406)
Q Consensus       365 g~i~iw~~~~~~~~~~~~~  383 (406)
                      ..|.+.|.++++.++.+++
T Consensus       170 ~~I~vIDp~tG~V~~~idl  188 (243)
T 3mbr_X          170 SRIARIDPASGKVVAWIDL  188 (243)
T ss_dssp             TEEEEECTTTCBEEEEEEC
T ss_pred             CeEEEEECCCCCEEEEEEC
Confidence            8899999999988776654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.69  E-value=2.6e-05  Score=74.66  Aligned_cols=245  Identities=15%  Similarity=0.073  Sum_probs=143.5

Q ss_pred             CCeEEEEecCCeEEEEEecccccceeecceeccceeeecccc-cCcEEEEEE-CCCCC-EEEEee------CCCeEEEEe
Q 015490          125 GDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLEN-VGQQLALTF-DSEGT-IFAAGS------ENGNLRVFK  195 (406)
Q Consensus       125 ~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~-s~~g~-~l~~~~------~dg~i~vwd  195 (406)
                      +..++++.. ..+|+-+|..+++............   .... ..++  +.= ..+|+ .+++++      .++.|+.+|
T Consensus       117 ~~~v~~~t~-dg~l~AlD~~TG~~~W~~~~~~~~~---~~~~~~sP~--v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD  190 (582)
T 1flg_A          117 GDKVFFGTL-DASVVALNKNTGKVVWKKKFADHGA---GYTMTGAPT--IVKDGKTGKVLLIHGSSGDEFGVVGRLFARD  190 (582)
T ss_dssp             TTEEEEEET-TTEEEEEESSSCCEEEEEECSCGGG---TCBCCSCCE--EEECTTTCCEEEEECCBCGGGCCBCEEEEEC
T ss_pred             CCEEEEEeC-CCEEEEEECCCCCEEeeecCCCCCc---CcccccCCE--EeCCCcCCcEEEEEeccccccCCCCEEEEEE
Confidence            345555542 2267778888888776654321100   0000 1111  111 11233 565654      378999999


Q ss_pred             CCCcceEeeeeccCCc-----------------------------------------eeEEEEccCCCEEEEEeC-----
Q 015490          196 WPSLEIILNESEAHAS-----------------------------------------VKDLSFSPDGKFLVSLGN-----  229 (406)
Q Consensus       196 ~~~~~~~~~~~~~~~~-----------------------------------------i~~~~~s~~~~~l~s~s~-----  229 (406)
                      ..+|+.+.........                                         -..+++.|+..+++.++.     
T Consensus       191 ~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~  270 (582)
T 1flg_A          191 PDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPW  270 (582)
T ss_dssp             TTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSS
T ss_pred             CCCCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcc
Confidence            9999877654321100                                         013556677677776653     


Q ss_pred             ---------------C----CCEEEEEcCCCeeeeecccC-Cc--------ceEEEEEEE-cCCCCceEEEEEEEcCCCc
Q 015490          230 ---------------R----GPGRVWDLASSAVATPLAKE-ND--------ELFASCRFS-PLNNEDYVLYIAAITDRGA  280 (406)
Q Consensus       230 ---------------d----~~i~iwd~~~~~~~~~~~~~-~~--------~~~~~~~~~-~~~~~~~~l~~~~~~~~~~  280 (406)
                                     |    +.|.-+|.++|+..-.++.. +.        .++ -+... .+++.   .-+++.++.+|
T Consensus       271 ~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~-l~~~~~~~G~~---~~~v~~~~~~G  346 (582)
T 1flg_A          271 NTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELV-LFDYKAKDGKI---VKATAHADRNG  346 (582)
T ss_dssp             CGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCE-EEEEECSSSCE---EEEEEEECTTS
T ss_pred             cCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcE-EEeeecCCCCE---EEEEEEECCCc
Confidence                           2    57999999999987766432 11        111 11221 34541   11345568899


Q ss_pred             EEEEEeCCCceEEEEeeecCC-------------C--------------------------------eEEEEEcCCCCEE
Q 015490          281 SIVTWNTTTWKRIRTKQVVRE-------------P--------------------------------VSSFNVSADGKLL  315 (406)
Q Consensus       281 ~i~~~d~~~~~~~~~~~~~~~-------------~--------------------------------i~~~~~sp~~~~l  315 (406)
                      .++++|..+++.+........             +                                ...++++|+...+
T Consensus       347 ~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~  426 (582)
T 1flg_A          347 FFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLF  426 (582)
T ss_dssp             EEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCE
T ss_pred             eEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEE
Confidence            999999999998776554310             0                                0134667765555


Q ss_pred             EEEe---------------------------------CCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEE
Q 015490          316 AVGT---------------------------------ASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSAS  362 (406)
Q Consensus       316 ~~~~---------------------------------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s  362 (406)
                      ++..                                 .+|.|..||+.+++.+-+...  ..++..-.....+.+++.++
T Consensus       427 yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~--~~~~~~g~~~tagglvf~g~  504 (582)
T 1flg_A          427 YVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKE--HLPLWAGVLATAGNLVFTGT  504 (582)
T ss_dssp             EEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEE--SSCCCSCCEEETTTEEEEEC
T ss_pred             EEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecC--CCCCcccceEeCCCEEEEEC
Confidence            5432                                 257899999999998877652  22222212222466788899


Q ss_pred             CCCcEEEEEecCCcCCCCc
Q 015490          363 MDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       363 ~dg~i~iw~~~~~~~~~~~  381 (406)
                      .|+.++.||.++++.+-++
T Consensus       505 ~dg~l~A~D~~tG~~lW~~  523 (582)
T 1flg_A          505 GDGYFKAFDAKSGKELWKF  523 (582)
T ss_dssp             TTSEEEEEETTTCCEEEEE
T ss_pred             CCCcEEEEECCCCCEEEEe
Confidence            9999999999999886544

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.66  E-value=1.1e-05  Score=78.92  Aligned_cols=258  Identities=11%  Similarity=0.023  Sum_probs=138.5

Q ss_pred             EEEEEEecCCCCccccceeEE-ecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeeccccc
Q 015490           89 VLLSHFDFASNSLSDQPVAEL-RTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV  167 (406)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (406)
                      ..+..+|...+.|....  .+ ..+.....++++.++++.+++|+.....++.+|..+..-...          ..+...
T Consensus       219 ~~~~~yd~~t~~w~~~~--~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~----------~~~~~~  286 (656)
T 1k3i_A          219 TLTSSWDPSTGIVSDRT--VTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPG----------PDMQVA  286 (656)
T ss_dssp             EEEEEECTTTCCBCCCE--EEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEEC----------CCCSSC
T ss_pred             EEEEEEeCCCCcEEeCc--ccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeEC----------CCCCcc
Confidence            36788999888775432  23 223444556888899999998872222455566543321111          011111


Q ss_pred             CcEEEEEECCCCCEEEEee-CC-----CeEEEEeCCCcceEeee----eccCCceeEEEEccCCCEEEEEeCC-------
Q 015490          168 GQQLALTFDSEGTIFAAGS-EN-----GNLRVFKWPSLEIILNE----SEAHASVKDLSFSPDGKFLVSLGNR-------  230 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~~-~d-----g~i~vwd~~~~~~~~~~----~~~~~~i~~~~~s~~~~~l~s~s~d-------  230 (406)
                      ..-.+++..++|++++.|+ .+     ..+.+||..+.+....-    ......-....+..++..++.++.+       
T Consensus       287 R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~  366 (656)
T 1k3i_A          287 RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAG  366 (656)
T ss_dssp             CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECC
T ss_pred             ccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEec
Confidence            1223456667999999998 34     57999999876543210    0000000011123345555555444       


Q ss_pred             --CCEEEEEcCCCeeeeecccCC--------cceEEEEEEEcCCCCceEEEEEEEcCCC--------c---EEEEEeCCC
Q 015490          231 --GPGRVWDLASSAVATPLAKEN--------DELFASCRFSPLNNEDYVLYIAAITDRG--------A---SIVTWNTTT  289 (406)
Q Consensus       231 --~~i~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~---~i~~~d~~~  289 (406)
                        ..+..||..+...........        ...-.++.|...+.+     +.+.++.+        .   .+.+||..+
T Consensus       367 ~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~-----i~v~GG~~~~~~~~~~~~~~~v~~yd~~~  441 (656)
T 1k3i_A          367 PSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGK-----ILTFGGSPDYQDSDATTNAHIITLGEPGT  441 (656)
T ss_dssp             SSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTE-----EEEECCBSSSSSSBCCCCEEEEECCSTTS
T ss_pred             CccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCe-----EEEEeCCCCCCCCCcCCcceEEEcCCCCC
Confidence              356788887765332221110        011223444443443     23333322        1   688899887


Q ss_pred             ceEEEEe--eecCC-CeEEEEEcCCCCEEEEEeCC-----------CcEEEEECCCceEEEEeec-ccccceEEEEEcCC
Q 015490          290 WKRIRTK--QVVRE-PVSSFNVSADGKLLAVGTAS-----------GDISIIDSSSLQVRTAVKK-AHLGIVTALAFSYD  354 (406)
Q Consensus       290 ~~~~~~~--~~~~~-~i~~~~~sp~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~sp~  354 (406)
                      .+-....  ..+.. .-.+++..|+++.+++|+.+           ..+.+||..+.+-...-.. ..........+.|+
T Consensus       442 ~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~d  521 (656)
T 1k3i_A          442 SPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPD  521 (656)
T ss_dssp             CCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTT
T ss_pred             CCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCC
Confidence            6543332  11222 12355677899999998854           4689999877653322110 11112234556799


Q ss_pred             CCeEEEEEC
Q 015490          355 SRALVSASM  363 (406)
Q Consensus       355 ~~~l~s~s~  363 (406)
                      |+.++.|+.
T Consensus       522 g~v~v~GG~  530 (656)
T 1k3i_A          522 GRVFNGGGG  530 (656)
T ss_dssp             SCEEEEECC
T ss_pred             cEEEecCCC
Confidence            999999885

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.64  E-value=5e-05  Score=72.61  Aligned_cols=184  Identities=15%  Similarity=0.134  Sum_probs=114.9

Q ss_pred             EEECCCCCEEEEeeCC----------------CeEEEEeCCCcceEeeeeccCC------ceeE---EEEccCCC---EE
Q 015490          173 LTFDSEGTIFAAGSEN----------------GNLRVFKWPSLEIILNESEAHA------SVKD---LSFSPDGK---FL  224 (406)
Q Consensus       173 ~~~s~~g~~l~~~~~d----------------g~i~vwd~~~~~~~~~~~~~~~------~i~~---~~~s~~~~---~l  224 (406)
                      +++.++...++.+..+                +.|..+|.++++.+..+.....      .+..   +....+|+   .+
T Consensus       240 ~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v  319 (571)
T 2ad6_A          240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLL  319 (571)
T ss_dssp             CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEE
T ss_pred             EEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEE
Confidence            4566665666655432                3699999999998776653211      1111   22224674   56


Q ss_pred             EEEeCCCCEEEEEcCCCeeeeecccCC------------cceE--------------------------EEEEEEcCCCC
Q 015490          225 VSLGNRGPGRVWDLASSAVATPLAKEN------------DELF--------------------------ASCRFSPLNNE  266 (406)
Q Consensus       225 ~s~s~d~~i~iwd~~~~~~~~~~~~~~------------~~~~--------------------------~~~~~~~~~~~  266 (406)
                      +.++.+|.++++|..+|+.+.......            ..++                          ..++++|+...
T Consensus       320 ~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~  399 (571)
T 2ad6_A          320 SHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRT  399 (571)
T ss_dssp             EEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTE
T ss_pred             EEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCE
Confidence            778889999999999998776543221            0111                          23567776652


Q ss_pred             ceEEEEEEEc----------------------------------CCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCC
Q 015490          267 DYVLYIAAIT----------------------------------DRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADG  312 (406)
Q Consensus       267 ~~~l~~~~~~----------------------------------~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~  312 (406)
                         +|+....                                  ..++.|..||+.+++.+-++.... .+.+..+...+
T Consensus       400 ---~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~g  475 (571)
T 2ad6_A          400 ---LYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKG  475 (571)
T ss_dssp             ---EEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETT
T ss_pred             ---EEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEECC
Confidence               3333210                                  246899999999999887776442 22222233346


Q ss_pred             CEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEE
Q 015490          313 KLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVS  360 (406)
Q Consensus       313 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s  360 (406)
                      ..+++++.||.|+.+|.++++.+..+..+....-..+.+..+|+.++.
T Consensus       476 g~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~  523 (571)
T 2ad6_A          476 GLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG  523 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence            678889999999999999999998886333222223445567765443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.63  E-value=5.3e-05  Score=69.08  Aligned_cols=209  Identities=11%  Similarity=-0.044  Sum_probs=127.7

Q ss_pred             ccCcEEEEEECCCCCEEEEe-eCCCeEEEEeCCCc----ceEeeeeccCCceeEEEEccCCCEEEE-EeCCCCEEEEEcC
Q 015490          166 NVGQQLALTFDSEGTIFAAG-SENGNLRVFKWPSL----EIILNESEAHASVKDLSFSPDGKFLVS-LGNRGPGRVWDLA  239 (406)
Q Consensus       166 ~~~~v~~~~~s~~g~~l~~~-~~dg~i~vwd~~~~----~~~~~~~~~~~~i~~~~~s~~~~~l~s-~s~d~~i~iwd~~  239 (406)
                      ....+..++|++.+..|+.. ...+.|+.+++...    .....+.........+++.+.+..|+. -...+.|.+.++.
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence            34677899999865555444 45688999988652    122222223336788999885554544 4567789999987


Q ss_pred             CCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEe
Q 015490          240 SSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGT  319 (406)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~  319 (406)
                      .......+.. .......+++.|.+..   +|++-. +..+.|...++............-.....+++++++..|+.+.
T Consensus       190 g~~~~~l~~~-~~~~P~~iavdp~~g~---ly~td~-~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD  264 (400)
T 3p5b_L          190 GVKRKTLFRE-NGSKPRAIVVDPVHGF---MYWTDW-GTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVD  264 (400)
T ss_dssp             TCSEEEEEEC-SSCCEEEEEEETTTTE---EEEEEC-SSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred             CCceEEEEeC-CCCCcceEEEecccCe---EEEEeC-CCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEE
Confidence            5543333322 2234678999997764   444432 3347888888875433332222225678999999888887775


Q ss_pred             C-CCcEEEEECCCceEEEEeec-ccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCC
Q 015490          320 A-SGDISIIDSSSLQVRTAVKK-AHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGG  380 (406)
Q Consensus       320 ~-dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~  380 (406)
                      . .+.|..+|+........... ..-....++++. .+..+.+-...+.|..++..+++.+..
T Consensus       265 ~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~  326 (400)
T 3p5b_L          265 SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNL  326 (400)
T ss_dssp             TTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEE
T ss_pred             CCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEE
Confidence            4 67899999875433322221 122345577763 344555666678899898777765443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.62  E-value=1.1e-05  Score=70.52  Aligned_cols=193  Identities=11%  Similarity=0.168  Sum_probs=123.8

Q ss_pred             CEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccC----CCE--EEEEe--C--CCCEEEEEcC--CCeeeeec
Q 015490          180 TIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPD----GKF--LVSLG--N--RGPGRVWDLA--SSAVATPL  247 (406)
Q Consensus       180 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~----~~~--l~s~s--~--d~~i~iwd~~--~~~~~~~~  247 (406)
                      .+++.....+-+.+||+ +|+.+..+..  +.++.+..-|+    |+.  ++.++  .  +++|.+|++.  ++. +..+
T Consensus        41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i  116 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSM  116 (355)
T ss_dssp             CEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEEC
T ss_pred             cEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeec
Confidence            55666667789999999 8888877643  45666666552    332  33333  3  5789999773  333 4333


Q ss_pred             cc---C--Cc-ceEEEEEE--EcCCCCceEEEEEEEcCCCcEEEEEeC-------CCceEEEEeeecCCCeEEEEEcCCC
Q 015490          248 AK---E--ND-ELFASCRF--SPLNNEDYVLYIAAITDRGASIVTWNT-------TTWKRIRTKQVVREPVSSFNVSADG  312 (406)
Q Consensus       248 ~~---~--~~-~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~i~~~d~-------~~~~~~~~~~~~~~~i~~~~~sp~~  312 (406)
                      ..   .  .. ..+..+++  +|....   +++++ ...++.+..|++       .+.+.++++... +.+..+...+..
T Consensus       117 ~~~~~pv~t~~~~pyGlcly~~~~~g~---~yafV-~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~  191 (355)
T 3amr_A          117 TDPDHPIATAINEVYGFTLYHSQKTGK---YYAMV-TGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEY  191 (355)
T ss_dssp             SCTTSCEECCCSSCCCEEEEECTTTCC---EEEEE-ECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTT
T ss_pred             cccccCcCCCCCCeeEEEEEecCCCCc---EEEEE-ECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCC
Confidence            21   1  11 23445666  554443   23333 456689999888       344667777765 578899999999


Q ss_pred             CEEEEEeCCCcEEEEECC-----CceEEEEeeccc-ccceEEEEE--cCCCC-eEEEEE-CCCcEEEEEec-CCcCCCCc
Q 015490          313 KLLAVGTASGDISIIDSS-----SLQVRTAVKKAH-LGIVTALAF--SYDSR-ALVSAS-MDSSVRVTVIE-DKKKSGGL  381 (406)
Q Consensus       313 ~~l~~~~~dg~i~i~d~~-----~~~~~~~~~~~~-~~~v~~~~~--sp~~~-~l~s~s-~dg~i~iw~~~-~~~~~~~~  381 (406)
                      ..|+++-++.-|..++.+     +.+.+..+..++ ...+..|++  .++++ +|++++ .++++.+||.+ +.+.++.|
T Consensus       192 g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f  271 (355)
T 3amr_A          192 GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF  271 (355)
T ss_dssp             TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence            999999998778888865     345555542222 236788887  45665 666666 57799999996 55555555

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.62  E-value=8.2e-05  Score=62.71  Aligned_cols=197  Identities=10%  Similarity=0.094  Sum_probs=125.3

Q ss_pred             CcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcceEeeeec-cCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCee--
Q 015490          168 GQQLALTFDSEGT-IFAAGSENGNLRVFKWPSLEIILNESE-AHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAV--  243 (406)
Q Consensus       168 ~~v~~~~~s~~g~-~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~--  243 (406)
                      ..+..++|+|+++ ++++...++.|...|.. ++....+.- .....-.+++.+++.++++.-.++.+.++++.....  
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~  105 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVK  105 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEE
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeee
Confidence            5689999999765 55557778899999987 777766643 224678899998887766665677899998765432  


Q ss_pred             -eeecc-----cCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC-CceEEEEee-------ecCCCeEEEEEc
Q 015490          244 -ATPLA-----KENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT-TWKRIRTKQ-------VVREPVSSFNVS  309 (406)
Q Consensus       244 -~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~-~~~~~~~~~-------~~~~~i~~~~~s  309 (406)
                       .....     .........++|+|.+..   ++ ++.......|+.|+-. ....+..+.       .....+.+++++
T Consensus       106 ~~~~~~~~~~~~~~N~g~EGLA~d~~~~~---L~-va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~d  181 (255)
T 3qqz_A          106 ILKKIKIPLQESPTNCGFEGLAYSRQDHT---FW-FFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFN  181 (255)
T ss_dssp             EEEEEECCCSSCCCSSCCEEEEEETTTTE---EE-EEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEE
T ss_pred             eeeeeccccccccccCCcceEEEeCCCCE---EE-EEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEc
Confidence             12221     123444789999999875   33 3443434467777621 111111111       122357899999


Q ss_pred             CCCC-EEEEEeCCCcEEEEECCCceEEEEeec--ccc------cceEEEEEcCCCCeEEEEECCCcEEEEE
Q 015490          310 ADGK-LLAVGTASGDISIIDSSSLQVRTAVKK--AHL------GIVTALAFSYDSRALVSASMDSSVRVTV  371 (406)
Q Consensus       310 p~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~------~~v~~~~~sp~~~~l~s~s~dg~i~iw~  371 (406)
                      |... +++.......+.++|.+ ++.+..+.-  +..      ...-.|+|.++|+..++ +..+.++++.
T Consensus       182 p~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~  250 (255)
T 3qqz_A          182 QQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT  250 (255)
T ss_dssp             TTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred             CCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence            9654 55555557788999976 555555431  111      24579999999985554 6776555553

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.58  E-value=4.1e-05  Score=67.36  Aligned_cols=205  Identities=12%  Similarity=-0.031  Sum_probs=125.2

Q ss_pred             CcEEEEEECCCC-CEEEEeeCCCeEEEEeCCCcceEe-eeeccCCceeEEEEccCCCEEE-EEeCCCCEEEEEcCCCeee
Q 015490          168 GQQLALTFDSEG-TIFAAGSENGNLRVFKWPSLEIIL-NESEAHASVKDLSFSPDGKFLV-SLGNRGPGRVWDLASSAVA  244 (406)
Q Consensus       168 ~~v~~~~~s~~g-~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~-s~s~d~~i~iwd~~~~~~~  244 (406)
                      .....++|.+.+ .++.+-...+.|..+++....... .+...-.....+++.+.+..|+ +-...+.|.++++......
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~  114 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK  114 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence            456788999854 455555567889999987653211 1222223567889987555554 4456678999998654322


Q ss_pred             eecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC-CCc
Q 015490          245 TPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA-SGD  323 (406)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~  323 (406)
                      ..+. ........+++.|.+..   +|++- .+..+.|...++............-.....++++|++..|+.+.. .+.
T Consensus       115 ~l~~-~~~~~P~giavdp~~g~---ly~td-~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~  189 (318)
T 3sov_A          115 VLFW-QELDQPRAIALDPSSGF---MYWTD-WGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNF  189 (318)
T ss_dssp             EEEC-SSCSSEEEEEEEGGGTE---EEEEE-CSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             EEEe-CCCCCccEEEEeCCCCE---EEEEe-cCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCE
Confidence            2222 22334578999987663   44432 234678999888643322222222245689999998777776654 678


Q ss_pred             EEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCC
Q 015490          324 ISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSG  379 (406)
Q Consensus       324 i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~  379 (406)
                      |..+|+..... ..+..........+++.. +..+.+-...+.|..++..+++...
T Consensus       190 I~~~d~dG~~~-~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~  243 (318)
T 3sov_A          190 IHKSNLDGTNR-QAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLR  243 (318)
T ss_dssp             EEEEETTSCSC-EEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCE
T ss_pred             EEEEcCCCCce-EEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceE
Confidence            99999874332 222222334566777753 3455555567889889887776543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.58  E-value=0.00028  Score=70.49  Aligned_cols=245  Identities=13%  Similarity=0.084  Sum_probs=149.8

Q ss_pred             CCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEE
Q 015490          113 SDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLR  192 (406)
Q Consensus       113 ~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~  192 (406)
                      ...|.++...+++...+.+.++.+  +.++..+.+. ..+.....  .. ..-....|.++...++|.+.+ |+.+ -|.
T Consensus       214 ~~~i~~i~~d~~g~lwigt~~~Gl--~~~~~~~~~~-~~~~~~~~--~~-~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~  285 (795)
T 4a2l_A          214 TKQIQAILQQSPTRIWVATEGAGL--FLINPKTKEI-KNYLHSPS--NP-KSISSNYIRSLAMDSQNRLWI-GTFN-DLN  285 (795)
T ss_dssp             CCCEEEEEEEETTEEEEEEBSSCE--EEEETTTTEE-EEECCCTT--CT-TSCSCSBEEEEEECTTSCEEE-EESS-CEE
T ss_pred             CCeeEEEEEcCCCCEEEEECCCCe--EEEeCCCCeE-EEeecCCC--Cc-cccCCCeEEEEEEcCCCCEEE-EeCC-hhh
Confidence            467888888887775554434444  4455433221 11110000  00 001235699999998887554 4455 588


Q ss_pred             EEeCCCcceEeeeec-------cCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecc-----cCCcceEEEEEE
Q 015490          193 VFKWPSLEIILNESE-------AHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLA-----KENDELFASCRF  260 (406)
Q Consensus       193 vwd~~~~~~~~~~~~-------~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~  260 (406)
                      +||..++........       ....|.++...++|. |..|+.++.|..|+..++.......     .-....|.++..
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~  364 (795)
T 4a2l_A          286 IYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVE  364 (795)
T ss_dssp             EEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEE
T ss_pred             eEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEE
Confidence            899877654432211       123799999998887 5667777889999876554322111     112345778887


Q ss_pred             EcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEee--------ecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCc
Q 015490          261 SPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQ--------VVREPVSSFNVSADGKLLAVGTASGDISIIDSSSL  332 (406)
Q Consensus       261 ~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~--------~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~  332 (406)
                      .+++.    + +++  ..++.|..||..+++...-..        .....|.++...++|+.|.+|+.++-|.+||..++
T Consensus       365 d~~g~----l-WiG--t~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~  437 (795)
T 4a2l_A          365 DKDKN----L-WIG--TNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSG  437 (795)
T ss_dssp             CTTSC----E-EEE--ESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTC
T ss_pred             CCCCC----E-EEE--ECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCC
Confidence            77776    2 333  345568899988765433221        12357899999999986677787777999999877


Q ss_pred             eEEEEeec---ccccceEEEEEcCCCCeEEEEECCCcEEEEEecCC
Q 015490          333 QVRTAVKK---AHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDK  375 (406)
Q Consensus       333 ~~~~~~~~---~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~  375 (406)
                      +.......   .+...|.++...++|++.+. +. +.+.+|+..++
T Consensus       438 ~~~~~~~~~~~l~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~  481 (795)
T 4a2l_A          438 QVENFNQRNSQLVNENVYAILPDGEGNLWLG-TL-SALVRFNPEQR  481 (795)
T ss_dssp             CEEEECTTTSCCSCSCEEEEEECSSSCEEEE-ES-SCEEEEETTTT
T ss_pred             cEEEeecCCCCcCCCeeEEEEECCCCCEEEE-ec-CceeEEeCCCC
Confidence            64432210   13456899999988886654 44 45888887654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.56  E-value=0.00045  Score=62.86  Aligned_cols=230  Identities=10%  Similarity=0.015  Sum_probs=135.2

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeeccc-ccC
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVG  168 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  168 (406)
                      .+..++.+...     ...+......+..++|++.+..|+.+....-+|+.++........        ....... ...
T Consensus        93 ~I~~i~l~~~~-----~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~--------~~~~~~~~~~~  159 (400)
T 3p5b_L           93 EVRKMTLDRSE-----YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS--------SYDTVISRDIQ  159 (400)
T ss_dssp             EEEEECTTSCS-----CEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------C--------CCEEEECSSCS
T ss_pred             eeEEEccCCcc-----eeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCC--------cceEEEeCCCC
Confidence            45555555432     223334456789999999888787776333467666654311000        0000111 224


Q ss_pred             cEEEEEECC-CCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeC--CCCEEEEEcCCCeeee
Q 015490          169 QQLALTFDS-EGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGN--RGPGRVWDLASSAVAT  245 (406)
Q Consensus       169 ~v~~~~~s~-~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~--d~~i~iwd~~~~~~~~  245 (406)
                      ....+++.+ .++++++-...+.|.+.+++.......+.........+++.|.+.+|+.+..  .+.|...++.......
T Consensus       160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~  239 (400)
T 3p5b_L          160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS  239 (400)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE
T ss_pred             CcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE
Confidence            567888887 4455555566789999998765444333333346789999997776666542  3688888886433322


Q ss_pred             ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeee--cCCCeEEEEEcCCCCEEEEEeCCCc
Q 015490          246 PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQV--VREPVSSFNVSADGKLLAVGTASGD  323 (406)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~i~~~~~sp~~~~l~~~~~dg~  323 (406)
                      .+. ..-.....+++++++..   +|++  ....+.|..+|+...........  .-.....+++. .+..+++-...+.
T Consensus       240 ~~~-~~l~~P~glavd~~~~~---lY~a--D~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~  312 (400)
T 3p5b_L          240 LVT-ENIQWPNGITLDLLSGR---LYWV--DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA  312 (400)
T ss_dssp             EEC-SSCSCEEEEEEETTTTE---EEEE--ETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCS
T ss_pred             EEE-CCCCceEEEEEEeCCCE---EEEE--ECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCe
Confidence            222 22234678999998875   4443  45678999999875433222222  12345677773 3334445555788


Q ss_pred             EEEEECCCceEEEEee
Q 015490          324 ISIIDSSSLQVRTAVK  339 (406)
Q Consensus       324 i~i~d~~~~~~~~~~~  339 (406)
                      |..+|..+++.+..+.
T Consensus       313 V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          313 IFSANRLTGSDVNLLA  328 (400)
T ss_dssp             EEEEESSSCCCCEEEE
T ss_pred             EEEEEcCCCCceEEEe
Confidence            9999977776655554

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.55  E-value=7.9e-05  Score=68.99  Aligned_cols=248  Identities=9%  Similarity=0.006  Sum_probs=142.9

Q ss_pred             CceEEEEcc-CCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEE-------CCCCCEEEEee
Q 015490          115 LPYRMAIHP-HGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTF-------DSEGTIFAAGS  186 (406)
Q Consensus       115 ~v~~~~~sp-~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------s~~g~~l~~~~  186 (406)
                      ....|+|.| +...|+++.+..-+|+.++.........+...        .........++|       +++|+.|+++.
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~--------~~~~~~p~~ia~~~~~~~~d~~G~~lyvad  211 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNIN--------TIPTNRIRSIAFNKKIEGYADEAEYMIVAI  211 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCT--------TSSCSBEEEEEECCCBTTTBCTTCEEEEEE
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccC--------ccccCCCcEEEEeecccccCCCCCEEEEEe
Confidence            356899998 46667776655557888886543322211110        001235789999       99998666665


Q ss_pred             CCC-------eEEEEeCCC-cceE-----eeeeccCCceeEEEEccCCCE-EEEEeCCCCEEEEEcC-------CCee--
Q 015490          187 ENG-------NLRVFKWPS-LEII-----LNESEAHASVKDLSFSPDGKF-LVSLGNRGPGRVWDLA-------SSAV--  243 (406)
Q Consensus       187 ~dg-------~i~vwd~~~-~~~~-----~~~~~~~~~i~~~~~s~~~~~-l~s~s~d~~i~iwd~~-------~~~~--  243 (406)
                      ..+       .|.+++... +...     ..+.. ......++.+|++.. +++-..++.|..+|+.       ++..  
T Consensus       212 ~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~t  290 (496)
T 3kya_A          212 DYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWD  290 (496)
T ss_dssp             CCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCC
T ss_pred             CCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeec
Confidence            543       266665333 2221     12221 224567889995544 4455567789999987       4543  


Q ss_pred             ---------eee-cccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeC--CCceE--EEEeeec---C------
Q 015490          244 ---------ATP-LAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNT--TTWKR--IRTKQVV---R------  300 (406)
Q Consensus       244 ---------~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~--~~~~~--~~~~~~~---~------  300 (406)
                               ... +..........++|+|+++.   +|  .+....+.|+.++.  .++..  ...+.+.   .      
T Consensus       291 p~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~---lY--vaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~  365 (496)
T 3kya_A          291 PIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKY---AY--FGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDV  365 (496)
T ss_dssp             CBGGGCTTTEEEEEECSSSSCCEEEEECTTSSE---EE--EEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCB
T ss_pred             ccccccccccceeEecCCCCCceEEEEcCCCCE---EE--EEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCc
Confidence                     111 11222334568999999984   33  34456788888654  33322  1222221   0      


Q ss_pred             ------CCeE-EEEEc-------CCCCEEEEEeCCCcEEEEECCCceEEEEeec-------------cc----------c
Q 015490          301 ------EPVS-SFNVS-------ADGKLLAVGTASGDISIIDSSSLQVRTAVKK-------------AH----------L  343 (406)
Q Consensus       301 ------~~i~-~~~~s-------p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------~~----------~  343 (406)
                            .... .++..       ++|.++++-...+.|+.++ .++.. .++..             +.          -
T Consensus       366 ~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f  443 (496)
T 3kya_A          366 GTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV-STYAGRGASTSLADGNQWGTDDGDLREVARF  443 (496)
T ss_dssp             GGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCC
T ss_pred             ccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCE-EEEecccccccccCccccccCCCCchhhhhc
Confidence                  1234 44554       4566555555678899998 45543 33321             00          1


Q ss_pred             cceEEEEEcCC-CCeEEEEECCCcEEEEEecCCcCC
Q 015490          344 GIVTALAFSYD-SRALVSASMDSSVRVTVIEDKKKS  378 (406)
Q Consensus       344 ~~v~~~~~sp~-~~~l~s~s~dg~i~iw~~~~~~~~  378 (406)
                      .....|+++++ |.++++=+.+.+|+.++++....+
T Consensus       444 ~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~  479 (496)
T 3kya_A          444 RDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENV  479 (496)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred             CCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence            23678999997 777777677889999999876554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.54  E-value=0.00038  Score=61.18  Aligned_cols=211  Identities=12%  Similarity=0.014  Sum_probs=124.5

Q ss_pred             CCCCceEEEEccCCCeEEEEecCCeEEEEEecccc---cceeecceeccceeeecccccCcEEEEEECCCC-CEEEEeeC
Q 015490          112 DSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVEN---TEIRRLGVKISEKVLSQLENVGQQLALTFDSEG-TIFAAGSE  187 (406)
Q Consensus       112 h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~  187 (406)
                      ....+..++|++.+..|+.+....-+|+.++....   .....        .+.  ..-.....+++.+.+ +++++-..
T Consensus        28 ~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~--------~~~--~~~~~p~glavd~~~~~ly~~d~~   97 (316)
T 1ijq_A           28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT--------VIS--RDIQAPDGLAVDWIHSNIYWTDSV   97 (316)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE--------EEC--SSCSCCCEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEE--------EEe--CCCCCcCEEEEeecCCeEEEEECC
Confidence            34567899999988878777643446777765431   11000        000  111345678888654 44455566


Q ss_pred             CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCC--CCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCC
Q 015490          188 NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNR--GPGRVWDLASSAVATPLAKENDELFASCRFSPLNN  265 (406)
Q Consensus       188 dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (406)
                      .+.|.+++++.................++++|.+..|+.+...  +.|...++.. .....+....-.....+++++++.
T Consensus        98 ~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~P~gla~d~~~~  176 (316)
T 1ijq_A           98 LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSG  176 (316)
T ss_dssp             TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTT
T ss_pred             CCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECCCCCceEEEEeccCC
Confidence            7899999986543332222233467899999977766665543  6788888753 333322212233467899999877


Q ss_pred             CceEEEEEEEcCCCcEEEEEeCCCceEEEEeee--cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEee
Q 015490          266 EDYVLYIAAITDRGASIVTWNTTTWKRIRTKQV--VREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVK  339 (406)
Q Consensus       266 ~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  339 (406)
                      .   +|  .+....+.|..+|+...........  .......+++. .+..+++-...+.|..++..+++....+.
T Consensus       177 ~---lY--~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~  246 (316)
T 1ijq_A          177 R---LY--WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  246 (316)
T ss_dssp             E---EE--EEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             E---EE--EEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence            5   33  3445678999999875332222221  12345778885 34444555557889999987766555443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.53  E-value=0.00036  Score=61.32  Aligned_cols=209  Identities=8%  Similarity=-0.057  Sum_probs=124.4

Q ss_pred             CCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCC-CCEEEEeeCCCeEE
Q 015490          114 DLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSE-GTIFAAGSENGNLR  192 (406)
Q Consensus       114 ~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~dg~i~  192 (406)
                      ..+.+++|.+.+..|+.+.-..-+|+.++.........        .+  ...-.....+++.+. +.++++-...+.|.
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~--------~~--~~~l~~p~glavd~~~g~ly~~d~~~~~I~  104 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN--------VV--VSGLLSPDGLACDWLGEKLYWTDSETNRIE  104 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE--------EE--EECCSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE--------EE--cCCCCCccEEEEEcCCCeEEEEECCCCEEE
Confidence            35678999998777777763444677777654321100        00  011234567888874 45555555678999


Q ss_pred             EEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeC--CCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEE
Q 015490          193 VFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGN--RGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVL  270 (406)
Q Consensus       193 vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  270 (406)
                      +++++.................+++.|.+..|+.+..  .+.|...++.... ...+....-.....+++++++..   +
T Consensus       105 ~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~l~~Pnglavd~~~~~---l  180 (318)
T 3sov_A          105 VSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFIIINSEIYWPNGLTLDYEEQK---L  180 (318)
T ss_dssp             EEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEEEECSSCSCEEEEEEETTTTE---E
T ss_pred             EEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEEEEECCCCCccEEEEeccCCE---E
Confidence            9998654332222233346789999997666666653  5678888875432 22221122234578999998775   4


Q ss_pred             EEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEee
Q 015490          271 YIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVK  339 (406)
Q Consensus       271 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  339 (406)
                      |+  +....+.|..+|+..................+++.. +..+.+-...+.|..++..+++....+.
T Consensus       181 Y~--aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          181 YW--ADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIH  246 (318)
T ss_dssp             EE--EETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             EE--EECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence            33  345678999999875332222222234567788753 3344444457889999987776555543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.49  E-value=0.00047  Score=65.98  Aligned_cols=183  Identities=15%  Similarity=0.100  Sum_probs=113.9

Q ss_pred             EEEECCCCCEEEEeeCC----------------CeEEEEeCCCcceEeeeeccCCc------e---eEEEEc-cCC---C
Q 015490          172 ALTFDSEGTIFAAGSEN----------------GNLRVFKWPSLEIILNESEAHAS------V---KDLSFS-PDG---K  222 (406)
Q Consensus       172 ~~~~s~~g~~l~~~~~d----------------g~i~vwd~~~~~~~~~~~~~~~~------i---~~~~~s-~~~---~  222 (406)
                      .+++.++..+++.+..+                +.|..+|.++|+.+..+...+..      .   .-+... .+|   .
T Consensus       245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~  324 (599)
T 1w6s_A          245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARK  324 (599)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEE
T ss_pred             ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEE
Confidence            34566666777776554                48999999999988766543221      1   112222 467   4


Q ss_pred             EEEEEeCCCCEEEEEcCCCeeeeecccCC------------cceE--------------------------EEEEEEcCC
Q 015490          223 FLVSLGNRGPGRVWDLASSAVATPLAKEN------------DELF--------------------------ASCRFSPLN  264 (406)
Q Consensus       223 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~------------~~~~--------------------------~~~~~~~~~  264 (406)
                      .++.++.+|.++++|.++|+.+.......            ..++                          ..++++|+.
T Consensus       325 ~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~  404 (599)
T 1w6s_A          325 LLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKR  404 (599)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred             EEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCC
Confidence            67778899999999999998775443211            1111                          134566655


Q ss_pred             CCceEEEEEE----------------------------E--cC------CCcEEEEEeCCCceEEEEeeecCCCeEEEEE
Q 015490          265 NEDYVLYIAA----------------------------I--TD------RGASIVTWNTTTWKRIRTKQVVREPVSSFNV  308 (406)
Q Consensus       265 ~~~~~l~~~~----------------------------~--~~------~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~  308 (406)
                      ..   +|+-.                            .  .+      ..+.|..||+.+++.+-+..... +...-.+
T Consensus       405 ~~---~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~  480 (599)
T 1w6s_A          405 EL---FFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF-AVWGGTM  480 (599)
T ss_dssp             TE---EEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS-CCCSBCE
T ss_pred             CE---EEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC-CccCcce
Confidence            42   22211                            0  01      45899999999999877765432 1111112


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeE
Q 015490          309 SADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRAL  358 (406)
Q Consensus       309 sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  358 (406)
                      ...+.+++.++.|+.++.||.++++.+-++..+......-+.+..+|+..
T Consensus       481 ~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qy  530 (599)
T 1w6s_A          481 ATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQY  530 (599)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             EecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEE
Confidence            23467888899999999999999999988763322222345566677643

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.48  E-value=0.00028  Score=67.52  Aligned_cols=184  Identities=15%  Similarity=0.155  Sum_probs=114.7

Q ss_pred             EEEECCCCCEEEEeeC--------------------C----CeEEEEeCCCcceEeeeecc-CC-----ceeE-EEEc--
Q 015490          172 ALTFDSEGTIFAAGSE--------------------N----GNLRVFKWPSLEIILNESEA-HA-----SVKD-LSFS--  218 (406)
Q Consensus       172 ~~~~s~~g~~l~~~~~--------------------d----g~i~vwd~~~~~~~~~~~~~-~~-----~i~~-~~~s--  218 (406)
                      .+++.|+..+++.+..                    |    +.|..+|..+|+.+..+... +.     .+.. +...  
T Consensus       250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~  329 (582)
T 1flg_A          250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYK  329 (582)
T ss_dssp             CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEE
T ss_pred             CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeee
Confidence            4567777777776652                    2    68999999999988776432 11     1111 1122  


Q ss_pred             -cCCC---EEEEEeCCCCEEEEEcCCCeeeeecccCC------------cceE---------------------------
Q 015490          219 -PDGK---FLVSLGNRGPGRVWDLASSAVATPLAKEN------------DELF---------------------------  255 (406)
Q Consensus       219 -~~~~---~l~s~s~d~~i~iwd~~~~~~~~~~~~~~------------~~~~---------------------------  255 (406)
                       .+|+   .++.++.+|.++++|.++|+.+..+....            ..++                           
T Consensus       330 ~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~  409 (582)
T 1flg_A          330 AKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFL  409 (582)
T ss_dssp             CSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTT
T ss_pred             cCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCc
Confidence             4674   67888999999999999998775443221            0000                           


Q ss_pred             -----EEEEEEcCCCCceEEEEEEE------------------------------cCCCcEEEEEeCCCceEEEEeeecC
Q 015490          256 -----ASCRFSPLNNEDYVLYIAAI------------------------------TDRGASIVTWNTTTWKRIRTKQVVR  300 (406)
Q Consensus       256 -----~~~~~~~~~~~~~~l~~~~~------------------------------~~~~~~i~~~d~~~~~~~~~~~~~~  300 (406)
                           ..++++|....   +|+...                              ....+.|..||+.+++.+-+.....
T Consensus       410 Gg~~w~~~a~dp~~g~---~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~  486 (582)
T 1flg_A          410 GGKNWNPMAYSQDTGL---FYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL  486 (582)
T ss_dssp             CSSCSSCCEECTTTCC---EEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS
T ss_pred             cccCCCCceECCCCCE---EEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC
Confidence                 12345554442   222211                              1246899999999999887766442


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEE
Q 015490          301 EPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALV  359 (406)
Q Consensus       301 ~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  359 (406)
                       ++..-.....+.++++++.|+.++.||.++++.+.++.........-+.+..+|+..+
T Consensus       487 -~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv  544 (582)
T 1flg_A          487 -PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             -CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             -CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence             2221112224678888999999999999999999888632221122366667776443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.48  E-value=0.00033  Score=70.04  Aligned_cols=240  Identities=10%  Similarity=0.095  Sum_probs=147.5

Q ss_pred             CCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEE
Q 015490          114 DLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRV  193 (406)
Q Consensus       114 ~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~v  193 (406)
                      ..|.++...++|...+.+.++.+..+  +..... ...+...+.    ..--....|.++...++|.+. .|+.++-|..
T Consensus       310 ~~i~~i~~D~~g~lWigt~~~Gl~~~--~~~~~~-~~~~~~~~~----~~~l~~~~V~~i~~d~~g~lW-iGt~~~Gl~~  381 (795)
T 4a2l_A          310 RSVRSIFMDSQGGMWLGTYFGGLNYY--HPIRNR-FKNIRNIPY----KNSLSDNVVSCIVEDKDKNLW-IGTNDGGLNL  381 (795)
T ss_dssp             SCEEEEEECTTSCEEEEESSSCEEEE--CGGGGS-SEEECCCTT----SSSCSCSSEEEEEECTTSCEE-EEESSSCEEE
T ss_pred             CcEEEEEEeCCcCEEEEECCCCeEEe--CCCccc-ceEEcCCCC----CCCCCCCeeEEEEECCCCCEE-EEECCCCeEE
Confidence            56888888888775544435555444  332211 111100000    000123568999999888754 5677777899


Q ss_pred             EeCCCcceEeeeec--------cCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeeccc---CCcceEEEEEEEc
Q 015490          194 FKWPSLEIILNESE--------AHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAK---ENDELFASCRFSP  262 (406)
Q Consensus       194 wd~~~~~~~~~~~~--------~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~  262 (406)
                      |+..++........        ....|.++...++++.|..|+.++.+..||..+++.......   .....+.++...+
T Consensus       382 ~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~  461 (795)
T 4a2l_A          382 YNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG  461 (795)
T ss_dssp             ECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS
T ss_pred             EcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC
Confidence            99877654332211        134789999988888567788777899999987765432211   1234577887777


Q ss_pred             CCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEee------ecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEE
Q 015490          263 LNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQ------VVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRT  336 (406)
Q Consensus       263 ~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~------~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~  336 (406)
                      ++.    + ++++.   +.|..||..+++......      .....|.++...++|++.+.. . +-+..||..+.+.  
T Consensus       462 ~g~----l-wigt~---~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~~~~~~~~--  529 (795)
T 4a2l_A          462 EGN----L-WLGTL---SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSVFKQEGLDI--  529 (795)
T ss_dssp             SSC----E-EEEES---SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEEEEEETTEE--
T ss_pred             CCC----E-EEEec---CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe-C-CceEEEeCCCCeE--
Confidence            765    2 34432   358889988765433221      123568999999998766544 4 4588899877665  


Q ss_pred             Eee------cccccceEEEEEcCCCCeEEEEECCCcEEEEEecCC
Q 015490          337 AVK------KAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDK  375 (406)
Q Consensus       337 ~~~------~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~  375 (406)
                      .+.      ......|.++...++|.+.++. .. .|..||..++
T Consensus       530 ~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~d~~~~  572 (795)
T 4a2l_A          530 QKASILPVSNVTKLFTNCIYEASNGIIWVGT-RE-GFYCFNEKDK  572 (795)
T ss_dssp             EECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SS-CEEEEETTTT
T ss_pred             EEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CC-CceeECCCCC
Confidence            221      1234568999999999866544 44 5788887654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.47  E-value=4.2e-05  Score=74.66  Aligned_cols=246  Identities=13%  Similarity=0.124  Sum_probs=135.6

Q ss_pred             eEEEEcc-CCCeEEEEe-cC---------CeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEe
Q 015490          117 YRMAIHP-HGDGIICAL-QN---------SCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAG  185 (406)
Q Consensus       117 ~~~~~sp-~~~~l~~~~-~~---------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  185 (406)
                      .++++.| +++.++.|+ +.         .-.++.+|..+++-......        .........++++..+++++++|
T Consensus       189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~--------~~~~~~~~~~~~~~~~g~lyv~G  260 (656)
T 1k3i_A          189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT--------VTKHDMFCPGISMDGNGQIVVTG  260 (656)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE--------ECSCCCSSCEEEECTTSCEEEEC
T ss_pred             eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCccc--------CCCCCCccccccCCCCCCEEEeC
Confidence            4677777 788777776 21         12567777665432211000        00111223456788999999999


Q ss_pred             eC-CCeEEEEeCCCcceEeeeeccCC-ceeEEEEccCCCEEEEEe-CC-----CCEEEEEcCCCeeeeec-----ccCCc
Q 015490          186 SE-NGNLRVFKWPSLEIILNESEAHA-SVKDLSFSPDGKFLVSLG-NR-----GPGRVWDLASSAVATPL-----AKEND  252 (406)
Q Consensus       186 ~~-dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~s~s-~d-----~~i~iwd~~~~~~~~~~-----~~~~~  252 (406)
                      +. +..+.+||..+.+....-..... .-.+++..++++.++.|+ .+     ..+.+||..+.+-...-     .....
T Consensus       261 G~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~  340 (656)
T 1k3i_A          261 GNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTA  340 (656)
T ss_dssp             SSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCC
T ss_pred             CCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccc
Confidence            84 45899999877654322111112 223456677899888888 34     56999999877643320     00000


Q ss_pred             ceEEEEEEEcCCCCceEEEEEE-------EcCCCcEEEEEeCCCceEEEEeeecC---------CCeEEEEEcC-CCCEE
Q 015490          253 ELFASCRFSPLNNEDYVLYIAA-------ITDRGASIVTWNTTTWKRIRTKQVVR---------EPVSSFNVSA-DGKLL  315 (406)
Q Consensus       253 ~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~i~~~d~~~~~~~~~~~~~~---------~~i~~~~~sp-~~~~l  315 (406)
                      ..  ...+..++.    +|++.       .......+..||..+...........         ..-.++.|.. +++.+
T Consensus       341 ~~--~~~~~~~~~----iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~  414 (656)
T 1k3i_A          341 DK--QGLYRSDNH----AWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKIL  414 (656)
T ss_dssp             CT--TGGGTTTCS----CCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEE
T ss_pred             cc--cceeecCCc----eEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEE
Confidence            00  000111121    11111       11234567889987765433222111         1224455543 77888


Q ss_pred             EEEeCCC-----------cEEEEECCCceEEEEe-ecccccc-eEEEEEcCCCCeEEEEECC-----------CcEEEEE
Q 015490          316 AVGTASG-----------DISIIDSSSLQVRTAV-KKAHLGI-VTALAFSYDSRALVSASMD-----------SSVRVTV  371 (406)
Q Consensus       316 ~~~~~dg-----------~i~i~d~~~~~~~~~~-~~~~~~~-v~~~~~sp~~~~l~s~s~d-----------g~i~iw~  371 (406)
                      ++|+.++           .|.+||..+..-.... ...+... -.++...|++++++.|+.+           ..+.+||
T Consensus       415 v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~yd  494 (656)
T 1k3i_A          415 TFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYV  494 (656)
T ss_dssp             EECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEE
T ss_pred             EEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEc
Confidence            8887532           6788888766544332 0112222 2355677899999998864           4689999


Q ss_pred             ecCCc
Q 015490          372 IEDKK  376 (406)
Q Consensus       372 ~~~~~  376 (406)
                      ..+.+
T Consensus       495 p~t~~  499 (656)
T 1k3i_A          495 PEQDT  499 (656)
T ss_dssp             GGGTE
T ss_pred             CCCCc
Confidence            87654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.34  E-value=0.00051  Score=67.91  Aligned_cols=207  Identities=12%  Similarity=-0.013  Sum_probs=124.6

Q ss_pred             ccCcEEEEEECCCC-CEEEEeeCCCeEEEEeCCCc----ceEeeeeccCCceeEEEEccCCCEEEEE-eCCCCEEEEEcC
Q 015490          166 NVGQQLALTFDSEG-TIFAAGSENGNLRVFKWPSL----EIILNESEAHASVKDLSFSPDGKFLVSL-GNRGPGRVWDLA  239 (406)
Q Consensus       166 ~~~~v~~~~~s~~g-~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~i~~~~~s~~~~~l~s~-s~d~~i~iwd~~  239 (406)
                      ....+..++|.+.. .++++-...+.|+.+++...    .....+.........|++.+.++.|+.+ ...+.|.+.++.
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld  501 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  501 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence            34567889999854 44455555678999988653    2222222233356789998877655555 457789999987


Q ss_pred             CCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEe
Q 015490          240 SSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGT  319 (406)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~  319 (406)
                      .... ..+..........+++.|....   ||++-. +..+.|...++........+...-.....|++++.+..|+.+.
T Consensus       502 G~~~-~~l~~~~l~~P~gIaVDp~~g~---LYwtD~-g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD  576 (791)
T 3m0c_C          502 GVKR-KTLFRENGSKPRAIVVDPVHGF---MYWTDW-GTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVD  576 (791)
T ss_dssp             SSSE-EEEEECTTCCEEEEEEETTTTE---EEEEEC-SSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred             CCeE-EEEEeCCCCCcceEEEecCCCC---EEEecC-CCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEe
Confidence            5443 3332222334678999998764   444432 2337899999876444333332335678999998777777765


Q ss_pred             C-CCcEEEEECCCceEEEEeec-ccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCC
Q 015490          320 A-SGDISIIDSSSLQVRTAVKK-AHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKS  378 (406)
Q Consensus       320 ~-dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~  378 (406)
                      . .+.|..+++........+.. ..-....+|++.. ++++++-...+.|...+..+++.+
T Consensus       577 ~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~  636 (791)
T 3m0c_C          577 SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDV  636 (791)
T ss_dssp             TTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCC
T ss_pred             CCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcce
Confidence            4 56799999875443333321 1122345666643 344444445677877776666554

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.26  E-value=0.0016  Score=64.36  Aligned_cols=214  Identities=11%  Similarity=-0.014  Sum_probs=125.2

Q ss_pred             EecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCC-EEEEee
Q 015490          109 LRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGT-IFAAGS  186 (406)
Q Consensus       109 ~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~-~l~~~~  186 (406)
                      +......+..|+|.+....|+.+....-+|+.++........        .....+. .-.....|++.+.++ ++++-.
T Consensus       419 l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~--------~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~  490 (791)
T 3m0c_C          419 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS--------SYDTVISRDIQAPDGLAVDWIHSNIYWTDS  490 (791)
T ss_dssp             EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC----------------CEEEECSSCSCCCEEEEETTTTEEEEEET
T ss_pred             eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCc--------ceeEEEecCCCCcceeeeeecCCcEEEEec
Confidence            334456678999998777777765333466666554211000        0000111 224456788887664 444555


Q ss_pred             CCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeC--CCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCC
Q 015490          187 ENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGN--RGPGRVWDLASSAVATPLAKENDELFASCRFSPLN  264 (406)
Q Consensus       187 ~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (406)
                      ..+.|.+.+++.......+.........|++.|.+.+|+.+..  .+.|...++........+. ..-.....+++.+.+
T Consensus       491 ~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~-~~l~~P~GLavD~~~  569 (791)
T 3m0c_C          491 VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-ENIQWPNGITLDLLS  569 (791)
T ss_dssp             TTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC-SSCSCEEEEEEETTT
T ss_pred             CCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe-CCCCCceEEEEecCC
Confidence            6789999998755443333333346889999998666666653  2678888886543333322 222346789999887


Q ss_pred             CCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeec--CCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCceEEEEe
Q 015490          265 NEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVV--REPVSSFNVSADGKLLAVGT-ASGDISIIDSSSLQVRTAV  338 (406)
Q Consensus       265 ~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~i~~~~~sp~~~~l~~~~-~dg~i~i~d~~~~~~~~~~  338 (406)
                      ..   ||++  ......|..+++............  -....+|++.  +..|+... ..+.|...|..+++.+..+
T Consensus       570 ~~---LYwa--D~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          570 GR---LYWV--DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             TE---EEEE--ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             Ce---EEEE--eCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence            74   4444  355678999998764443333321  1234567664  33555544 4678888887776554444

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.22  E-value=0.0011  Score=66.23  Aligned_cols=246  Identities=13%  Similarity=0.065  Sum_probs=141.7

Q ss_pred             CCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEE
Q 015490          113 SDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLR  192 (406)
Q Consensus       113 ~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~  192 (406)
                      ...|.++...++|..-+...++.+..+  +..... ...+...+...... .-....|.++...++|.+. .|+.++-|.
T Consensus       312 ~~~v~~i~~D~~g~lWigt~~~Gl~~~--~~~~~~-~~~~~~~~~~~~~~-~l~~~~v~~i~~d~~g~lW-igt~~~Gl~  386 (781)
T 3v9f_A          312 NASARYIFQDSFNNIWIGTWGGGINFI--SNAPPT-FHTWSYSPTQMNES-SLSNKVVSSVCDDGQGKLW-IGTDGGGIN  386 (781)
T ss_dssp             SSCEEEEEECSSCCEEEEEBSSCEEEE--CSSCCS-CEEEC----CCCSS-CCSSSCEEEEEECTTSCEE-EEEBSSCEE
T ss_pred             CCeEEEEEEeCCCCEEEEecCCeEEEe--CCCCCc-ceeeccCccccccC-CCCCcceEEEEEcCCCCEE-EEeCCCcEE
Confidence            356788888877764443335555443  322111 11110000000000 0123568999998887654 566566688


Q ss_pred             EEeCCCcceEeee---eccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecc-cCCcceEEEEEEEcCCCCce
Q 015490          193 VFKWPSLEIILNE---SEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLA-KENDELFASCRFSPLNNEDY  268 (406)
Q Consensus       193 vwd~~~~~~~~~~---~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  268 (406)
                      .|+..++......   ......|.++...+++. |..++.++.+..+|..+++...... ......+.++...+++.   
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~---  462 (781)
T 3v9f_A          387 VFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK---  462 (781)
T ss_dssp             EEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE---
T ss_pred             EEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC---
Confidence            8997655432211   11234788998888776 4457776779999987776543221 12234577777766664   


Q ss_pred             EEEEEEEcCCCcEEEEEeCCCceEEEEeeec-----CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecc--
Q 015490          269 VLYIAAITDRGASIVTWNTTTWKRIRTKQVV-----REPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKA--  341 (406)
Q Consensus       269 ~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-----~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--  341 (406)
                       + ++++.   +.|..+|..+++........     ...|.++...++|++.+ |+.++-+..||..+.+... +...  
T Consensus       463 -l-wigt~---~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~-~~~~~~  535 (781)
T 3v9f_A          463 -I-WIGTH---AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVRK-FNQYEG  535 (781)
T ss_dssp             -E-EEEET---TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEEE-ECTTTT
T ss_pred             -E-EEEEC---CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEEE-ccCCCC
Confidence             2 33332   46889998876543322211     35789999999887554 4554448889987665433 2211  


Q ss_pred             -cccceEEEEEcCCCCeEEEEECCCcEEEEEecCC
Q 015490          342 -HLGIVTALAFSYDSRALVSASMDSSVRVTVIEDK  375 (406)
Q Consensus       342 -~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~  375 (406)
                       ....|.++...++|.+.++ +.+|-|..||..++
T Consensus       536 l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d~~~~  569 (781)
T 3v9f_A          536 FCSNTINQIYRSSKGQMWLA-TGEGLVCFPSARNF  569 (781)
T ss_dssp             CSCSCEEEEEECTTSCEEEE-ETTEEEEESCTTTC
T ss_pred             CCCCeeEEEEECCCCCEEEE-ECCCceEEECCCCC
Confidence             2346889999988886654 44664477776654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.19  E-value=0.0033  Score=60.64  Aligned_cols=202  Identities=10%  Similarity=-0.048  Sum_probs=126.8

Q ss_pred             cCcEEEEEECCCCCEEE-EeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEE-eCCCCEEEEEcCCCeee
Q 015490          167 VGQQLALTFDSEGTIFA-AGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSL-GNRGPGRVWDLASSAVA  244 (406)
Q Consensus       167 ~~~v~~~~~s~~g~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-s~d~~i~iwd~~~~~~~  244 (406)
                      -..+..++|++.+..|+ +-..++.|+.++++.......+.........+++.+.+..|+.+ ...+.|.+.++......
T Consensus        36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~  115 (628)
T 4a0p_A           36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQ  115 (628)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCE
T ss_pred             CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEE
Confidence            35678999998665554 44567899999986544333332222356789988766656555 45678999998654322


Q ss_pred             eecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC-CCc
Q 015490          245 TPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA-SGD  323 (406)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~  323 (406)
                      ..+. ..-.....+++.|....   +|++-. +..+.|...++.......... .-.....++++++++.|+.+.. .+.
T Consensus       116 ~l~~-~~l~~P~~iavdp~~G~---lY~tD~-g~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~aD~~~~~  189 (628)
T 4a0p_A          116 VLVW-KDLDSPRALALDPAEGF---MYWTEW-GGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDLDTNL  189 (628)
T ss_dssp             EEEC-SSCCCEEEEEEETTTTE---EEEEEC-SSSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTE
T ss_pred             EEEe-CCCCCcccEEEccCCCe---EEEeCC-CCCCEEEEEeCCCCceEEEEC-CCCCcceEEEccccCEEEEEECCCCE
Confidence            2221 22234578999987663   444432 336788888886544322222 3356789999998777777655 678


Q ss_pred             EEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490          324 ISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       324 i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      |..+|+..... ..+. .......++++.. +..+++-...+.|...|..+++.
T Consensus       190 I~~~d~dG~~~-~v~~-~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~  240 (628)
T 4a0p_A          190 IESSNMLGLNR-EVIA-DDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQN  240 (628)
T ss_dssp             EEEEETTSCSC-EEEE-ECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred             EEEEcCCCCce-EEee-ccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCc
Confidence            99999875443 2332 2333456777765 44445555578888888777654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.19  E-value=0.0021  Score=64.07  Aligned_cols=248  Identities=14%  Similarity=0.041  Sum_probs=141.1

Q ss_pred             CCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecc--eec-cceeeecccccCcEEEEEECCCCCEEEEeeCCC
Q 015490          113 SDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLG--VKI-SEKVLSQLENVGQQLALTFDSEGTIFAAGSENG  189 (406)
Q Consensus       113 ~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  189 (406)
                      ...|.++...++|...+....+.+.+  ++..+........  ... .......--....|.++...++|. |-.|+.++
T Consensus       257 ~~~i~~i~~d~~g~lWigt~~~Gl~~--~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~  333 (781)
T 3v9f_A          257 SSYIFSIKQLKDNKLWIATELNGIMI--LDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGG  333 (781)
T ss_dssp             CCCEEEEEECTTSEEEEEESSSCEEE--EETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSS
T ss_pred             CceEEEEEECCCCCEEEEeCCCCeEE--ECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCC
Confidence            35688888877776444333355444  4433222111000  000 000000001235689999998886 44666667


Q ss_pred             eEEEEeCCCcceEeeee---------ccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecc--cCCcceEEEE
Q 015490          190 NLRVFKWPSLEIILNES---------EAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLA--KENDELFASC  258 (406)
Q Consensus       190 ~i~vwd~~~~~~~~~~~---------~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~  258 (406)
                      -|..++..+........         .....|.++...++|. |..|+.++.+..||..++.......  ......+.++
T Consensus       334 Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i  412 (781)
T 3v9f_A          334 GINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCS  412 (781)
T ss_dssp             CEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEE
T ss_pred             eEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEE
Confidence            78888876554322111         0223689999888776 5567767779999987654332111  1123457777


Q ss_pred             EEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEee--ecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEE
Q 015490          259 RFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQ--VVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRT  336 (406)
Q Consensus       259 ~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~  336 (406)
                      ...+++.    + +++  ..++.|..+|..+++......  .....|.++...++|++. .|+. +-|..||..+++...
T Consensus       413 ~~d~~g~----l-Wig--t~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lw-igt~-~Gl~~~~~~~~~~~~  483 (781)
T 3v9f_A          413 LKDSEGN----L-WFG--TYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIW-IGTH-AGVFVIDLASKKVIH  483 (781)
T ss_dssp             EECTTSC----E-EEE--ETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEE-EEET-TEEEEEESSSSSCCE
T ss_pred             EECCCCC----E-EEE--eccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEE-EEEC-CceEEEeCCCCeEEe
Confidence            7776665    2 333  335678999988765432211  124578999988888644 4555 458899988765433


Q ss_pred             Eeeccc-----ccceEEEEEcCCCCeEEEEECCCcEEEEEecCC
Q 015490          337 AVKKAH-----LGIVTALAFSYDSRALVSASMDSSVRVTVIEDK  375 (406)
Q Consensus       337 ~~~~~~-----~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~  375 (406)
                      ... ..     ...|.++...++|++.+ |+.++.|..++..++
T Consensus       484 ~~~-~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~  525 (781)
T 3v9f_A          484 HYD-TSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQ  525 (781)
T ss_dssp             EEC-TTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCC
T ss_pred             ccc-CcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCC
Confidence            221 11     35689999999888665 455444777776543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.16  E-value=0.00058  Score=59.30  Aligned_cols=155  Identities=13%  Similarity=0.113  Sum_probs=101.1

Q ss_pred             EEEEECCCCCEEEEee-CCCeEEEEeCCCcceEeeeecc-----CC--ceeEEEE---ccCCCEEEEEe-----------
Q 015490          171 LALTFDSEGTIFAAGS-ENGNLRVFKWPSLEIILNESEA-----HA--SVKDLSF---SPDGKFLVSLG-----------  228 (406)
Q Consensus       171 ~~~~~s~~g~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~-----~~--~i~~~~~---s~~~~~l~s~s-----------  228 (406)
                      .+++|.+....|..++ ..++|..||...+.........     ..  .+..+.|   .|+++++++..           
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~   95 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS   95 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence            4688987555555554 7899999998755433222221     11  4689999   68877776543           


Q ss_pred             --CCCCEEEEEcC---CCeeeeecccC------------CcceEEEEEEEcCCCCceEEEEEEEcCCC-cEEEEEeCCCc
Q 015490          229 --NRGPGRVWDLA---SSAVATPLAKE------------NDELFASCRFSPLNNEDYVLYIAAITDRG-ASIVTWNTTTW  290 (406)
Q Consensus       229 --~d~~i~iwd~~---~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~i~~~d~~~~  290 (406)
                        .+..+..||+.   +++.+......            .......++..++|+-    |++.  +.. +.|..++....
T Consensus        96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gna----YVt~--s~~~~~I~rV~pdG~  169 (334)
T 2p9w_A           96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNS----YVAF--ALGMPAIARVSADGK  169 (334)
T ss_dssp             SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCE----EEEE--EESSCEEEEECTTSC
T ss_pred             cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCE----EEeC--CCCCCeEEEEeCCCC
Confidence              25779999998   77665433211            1124678999999883    4433  334 67777777654


Q ss_pred             eEEEEeeec------CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCc
Q 015490          291 KRIRTKQVV------REPVSSFNVSADGKLLAVGTASGDISIIDSSSL  332 (406)
Q Consensus       291 ~~~~~~~~~------~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~  332 (406)
                      . +..+...      ....+.|+++|+|+.|++....|.+..+|+.+.
T Consensus       170 ~-~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          170 T-VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             C-EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             E-EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence            2 2222111      123568999999999988877999999998843

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.13  E-value=0.003  Score=58.08  Aligned_cols=216  Identities=10%  Similarity=0.075  Sum_probs=116.8

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEec-C---CeEEEEEecccccceeecceeccceeeeccc
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQ-N---SCRLFEWDEVENTEIRRLGVKISEKVLSQLE  165 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~-~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (406)
                      .+..++....     .+..+......+..++++++|+ |+++.. +   ...++.+....... .       ...   +.
T Consensus       163 ~I~~id~~~g-----~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~-~-------~~~---~~  225 (433)
T 4hw6_A          163 AFRHVDFVNQ-----YVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFT-E-------RLS---LC  225 (433)
T ss_dssp             CEEEEETTTT-----EEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTC-C-------EEE---EE
T ss_pred             CEEEEECCCC-----EEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCee-c-------ccc---cc
Confidence            4555665432     3334444556689999999999 554432 1   22343343321110 0       001   11


Q ss_pred             ccCcEEEEEECC-CCCEEEEeeCCCeEEEEeCCCcceEeeeecc--CCceeEEEEccCCCEEEEE-eCCCCEEEEEcC--
Q 015490          166 NVGQQLALTFDS-EGTIFAAGSENGNLRVFKWPSLEIILNESEA--HASVKDLSFSPDGKFLVSL-GNRGPGRVWDLA--  239 (406)
Q Consensus       166 ~~~~v~~~~~s~-~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~s~-s~d~~i~iwd~~--  239 (406)
                      .......++++| +|.++++-..++.|+.+|..++.....+...  ...-..++|+|++++|+.+ ...+.|+.++..  
T Consensus       226 ~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~  305 (433)
T 4hw6_A          226 NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRE  305 (433)
T ss_dssp             ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTT
T ss_pred             ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCC
Confidence            223445688999 6776666667789999998877652222221  1233579999999965555 456789888865  


Q ss_pred             CCeee--eecccC--------------CcceEEEEEE---------EcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEE
Q 015490          240 SSAVA--TPLAKE--------------NDELFASCRF---------SPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIR  294 (406)
Q Consensus       240 ~~~~~--~~~~~~--------------~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~  294 (406)
                      ++...  ..+...              .-.....+++         .+++.    +|  ++...++.|+.++. ++. +.
T Consensus       306 ~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~----ly--vaD~~n~~I~~~~~-~G~-v~  377 (433)
T 4hw6_A          306 TGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD----FY--FCDRDSHTVRVLTP-EGR-VT  377 (433)
T ss_dssp             TCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE----EE--EEETTTTEEEEECT-TSE-EE
T ss_pred             CcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCc----EE--EEECCCCEEEEECC-CCC-EE
Confidence            22211  111110              0112456777         33332    33  34456788888885 443 33


Q ss_pred             EeeecC------------------CCeEEEEEc-CCCCEEEEEeCCCcEEEEECC
Q 015490          295 TKQVVR------------------EPVSSFNVS-ADGKLLAVGTASGDISIIDSS  330 (406)
Q Consensus       295 ~~~~~~------------------~~i~~~~~s-p~~~~l~~~~~dg~i~i~d~~  330 (406)
                      ++.+..                  .....++++ ++|.++++-..++.|+.++++
T Consensus       378 t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          378 TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            332210                  235678888 455544444446677777653

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.13  E-value=1.7e-05  Score=77.66  Aligned_cols=212  Identities=12%  Similarity=0.013  Sum_probs=117.5

Q ss_pred             CCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCC-CCEEEEeeCCCe
Q 015490          113 SDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSE-GTIFAAGSENGN  190 (406)
Q Consensus       113 ~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~-g~~l~~~~~dg~  190 (406)
                      ...+..++|.+.+..|+.+....-+|+.++.......        ......+. .......+++.+. ++++++-...+.
T Consensus       405 ~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~--------~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~  476 (699)
T 1n7d_A          405 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV--------SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGT  476 (699)
T ss_dssp             CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC---------CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSC
T ss_pred             CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCC--------cceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCe
Confidence            3456789999988878777522224444444321000        00000010 1123456788754 455555456788


Q ss_pred             EEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeC--CCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCce
Q 015490          191 LRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGN--RGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDY  268 (406)
Q Consensus       191 i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (406)
                      |.++++........+.........++++|.+.+|+.+..  .+.|.++++..... ..+....-.....++|+|++..  
T Consensus       477 I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~~l~~~~l~~PnGlavd~~~~~--  553 (699)
T 1n7d_A          477 VSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQWPNGITLDLLSGR--  553 (699)
T ss_dssp             EEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-CEESCSSCSSCCCEEECTTTCC--
T ss_pred             EEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-eEEEeCCCCCccEEEEeccCCE--
Confidence            999998755433322222235688999997665555543  26788877753322 2221111223457999998775  


Q ss_pred             EEEEEEEcCCCcEEEEEeCCCceEEEEeee--cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEee
Q 015490          269 VLYIAAITDRGASIVTWNTTTWKRIRTKQV--VREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVK  339 (406)
Q Consensus       269 ~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  339 (406)
                       +|+  +....+.|..+|+........+..  .......|++..+ .++++....+.|..++..+++.+..+.
T Consensus       554 -LY~--aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          554 -LYW--VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             -EEE--EETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             -EEE--EecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence             333  335678999999875333222221  1122345666543 344444457889999998888777764

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.10  E-value=0.00018  Score=66.21  Aligned_cols=158  Identities=13%  Similarity=0.110  Sum_probs=98.8

Q ss_pred             ceeEEEEcc-CCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCC--CcEEEEEeC
Q 015490          211 SVKDLSFSP-DGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDR--GASIVTWNT  287 (406)
Q Consensus       211 ~i~~~~~s~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~i~~~d~  287 (406)
                      ....++++| ++..|+++...+.|+.+|+.++.......  .......++|+++++.   +|++-....  ...+..++.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~--~~~~P~~ia~d~~G~~---lyvad~~~~~~~~~v~~~~~  212 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS--GLSKVRTICWTHEADS---MIITNDQNNNDRPNNYILTR  212 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC--CCSCEEEEEECTTSSE---EEEEECCSCTTSEEEEEEEG
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec--CCCCcceEEEeCCCCE---EEEEeCCCCcccceEEEEeC
Confidence            457899998 45566666655889999998766544333  2334678999999984   333332211  223444443


Q ss_pred             CCc-eEEEEeeecCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeE-EEEECC
Q 015490          288 TTW-KRIRTKQVVREPVSSFNVSA-DGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRAL-VSASMD  364 (406)
Q Consensus       288 ~~~-~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~s~s~d  364 (406)
                      ... .....+.. ......++++| +|.++++-..++.|+.++..++................++|+|+|++| ++-...
T Consensus       213 ~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~  291 (430)
T 3tc9_A          213 ESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQ  291 (430)
T ss_dssp             GGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTT
T ss_pred             CCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCC
Confidence            321 11122222 23356788999 666666655678999999987665333221223457899999999955 444567


Q ss_pred             CcEEEEEecC
Q 015490          365 SSVRVTVIED  374 (406)
Q Consensus       365 g~i~iw~~~~  374 (406)
                      +.|..++...
T Consensus       292 ~~I~~~~~d~  301 (430)
T 3tc9_A          292 HYILRSDYDW  301 (430)
T ss_dssp             TEEEEEEEET
T ss_pred             CEEEEEeCCc
Confidence            8899988763

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.08  E-value=0.0018  Score=57.70  Aligned_cols=234  Identities=14%  Similarity=0.137  Sum_probs=118.3

Q ss_pred             CCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCC---CCEEEEeeC-
Q 015490          112 DSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSE---GTIFAAGSE-  187 (406)
Q Consensus       112 h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~~~~-  187 (406)
                      .-.....|+|.|+|+.+++-..  .+|+.++  .+.. ..+.   ...  ...........++|+|+   +..|+++.. 
T Consensus        29 ~l~~P~~ia~~pdG~l~V~e~~--g~I~~i~--~g~~-~~~~---~~~--v~~~g~~~p~gia~~pdf~~~g~lYv~~~~   98 (352)
T 2ism_A           29 GLEVPWALAFLPDGGMLIAERP--GRIRLFR--EGRL-STYA---ELS--VYHRGESGLLGLALHPRFPQEPYVYAYRTV   98 (352)
T ss_dssp             CCSCEEEEEECTTSCEEEEETT--TEEEEEE--TTEE-EEEE---ECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred             CCCCceEEEEcCCCeEEEEeCC--CeEEEEE--CCCc-cEee---cce--EeecCCCCceeEEECCCCCCCCEEEEEEec
Confidence            3456789999999985555434  4666665  2221 1110   000  11123456789999998   545544433 


Q ss_pred             C-----CeEEEEeCCCcc-----eEee-ee---ccCCceeEEEEccCCCEEEEEeCC-------------CCEEEEEcCC
Q 015490          188 N-----GNLRVFKWPSLE-----IILN-ES---EAHASVKDLSFSPDGKFLVSLGNR-------------GPGRVWDLAS  240 (406)
Q Consensus       188 d-----g~i~vwd~~~~~-----~~~~-~~---~~~~~i~~~~~s~~~~~l~s~s~d-------------~~i~iwd~~~  240 (406)
                      .     +.|..++...+.     .+.. +.   ........++|.|||.+.++.+..             +.|.-++...
T Consensus        99 ~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG  178 (352)
T 2ism_A           99 AEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG  178 (352)
T ss_dssp             CTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS
T ss_pred             CCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC
Confidence            2     578888876431     1111 22   111134689999999766554321             3455555432


Q ss_pred             C------------eeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCC------cEEEEEeCCC-------------
Q 015490          241 S------------AVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRG------ASIVTWNTTT-------------  289 (406)
Q Consensus       241 ~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~i~~~d~~~-------------  289 (406)
                      .            .....+.... .....++|+|+...   +|+.-.+...      ..|.+.....             
T Consensus       179 ~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~---l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~  254 (352)
T 2ism_A          179 EPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGE---LFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGND  254 (352)
T ss_dssp             SBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCC---EEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCC
T ss_pred             CCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCC---EEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCC
Confidence            0            0001111111 12446788884433   4444333221      1344432211             


Q ss_pred             ---ceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceE------EEEeecccccceEEEEEcCCCCeEEE
Q 015490          290 ---WKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQV------RTAVKKAHLGIVTALAFSYDSRALVS  360 (406)
Q Consensus       290 ---~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~~v~~~~~sp~~~~l~s  360 (406)
                         ..++..+. +......++| .+|+++++....+.|...++.....      ...+. .....+..+++.|||.++++
T Consensus       255 ~~~~~p~~~~~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~-~~~~rp~~v~~~pdG~lyv~  331 (352)
T 2ism_A          255 PRYRDPLYFWP-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL-SGFGRLREVQVGPDGALYVT  331 (352)
T ss_dssp             TTSCCCSEECT-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE-ESSCCEEEEEECTTSCEEEE
T ss_pred             CCCcCCeEecC-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec-ccCCCeeEEEECCCCcEEEE
Confidence               01122221 1234567777 4666665555567788777754321      12222 22356889999999987766


Q ss_pred             EE
Q 015490          361 AS  362 (406)
Q Consensus       361 ~s  362 (406)
                      ..
T Consensus       332 ~~  333 (352)
T 2ism_A          332 TS  333 (352)
T ss_dssp             EC
T ss_pred             Ee
Confidence            54

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.08  E-value=0.0011  Score=64.01  Aligned_cols=205  Identities=12%  Similarity=-0.042  Sum_probs=120.6

Q ss_pred             cCcEEEEEECCCCCEEEEe-eCCCeEEEEeCCCcce-EeeeeccCCceeEEEEccCCCEEEEE-eCCCCEEEEEcCCCee
Q 015490          167 VGQQLALTFDSEGTIFAAG-SENGNLRVFKWPSLEI-ILNESEAHASVKDLSFSPDGKFLVSL-GNRGPGRVWDLASSAV  243 (406)
Q Consensus       167 ~~~v~~~~~s~~g~~l~~~-~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~s~-s~d~~i~iwd~~~~~~  243 (406)
                      -.....++|++.+..|+.+ ...+.|..++++.... ...+...-.....+++.+.++.|+.+ ...+.|.+.++.....
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~  118 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR  118 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence            3567889999866655554 4467898888865532 22222222467899999866655555 4567899999865433


Q ss_pred             eeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC-CC
Q 015490          244 ATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA-SG  322 (406)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg  322 (406)
                      ...+. ..-.....+++.|.+..   +|++-. +..+.|...++............-.....++++++++.|+.+.. .+
T Consensus       119 ~~l~~-~~l~~P~~Iavdp~~g~---ly~tD~-g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~  193 (619)
T 3s94_A          119 KVLFW-QELDQPRAIALDPSSGF---MYWTDW-GEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLN  193 (619)
T ss_dssp             EEEEC-SSCSCCCCEEEETTTTE---EEEEEC-SSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTC
T ss_pred             EEEEe-CCCCCCceEEEecCCCe---EEEecc-CCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCC
Confidence            22221 22223457899998664   444432 23567877777643332222223345789999998777776654 67


Q ss_pred             cEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCC
Q 015490          323 DISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKS  378 (406)
Q Consensus       323 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~  378 (406)
                      .|..+|+.......... +......++++..+ ..+.+-...+.|...|..+++..
T Consensus       194 ~I~~~~~dG~~~~~~~~-~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~  247 (619)
T 3s94_A          194 FIHKSNLDGTNRQAVVK-GSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGL  247 (619)
T ss_dssp             CEEEESSSCCEEC----------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCC
T ss_pred             eEEEecCCCCccEEEEe-CCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCccc
Confidence            89999987544332221 12223456777655 44444456678888888777653

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.04  E-value=6.5e-06  Score=80.68  Aligned_cols=208  Identities=11%  Similarity=-0.056  Sum_probs=117.1

Q ss_pred             CcEEEEEECCCCCEEEEe-eCCCeEEEEeCCC----cceEeeeeccCCceeEEEEccCCCEEEEE-eCCCCEEEEEcCCC
Q 015490          168 GQQLALTFDSEGTIFAAG-SENGNLRVFKWPS----LEIILNESEAHASVKDLSFSPDGKFLVSL-GNRGPGRVWDLASS  241 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~-~~dg~i~vwd~~~----~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-s~d~~i~iwd~~~~  241 (406)
                      ..+..++|++.+..|+.+ ...+.|+.+++..    ......+.........|++.+.+..|+.+ ...+.|.++++...
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            456678999866655554 4567899999875    22221221122245678887655444444 45678999998755


Q ss_pred             eeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEe-C
Q 015490          242 AVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGT-A  320 (406)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~  320 (406)
                      .....+.. .......+++.|.+..   +|++- ....+.|..+++............-.....|+|+|++..|+.+. .
T Consensus       486 ~~~~l~~~-~~~~P~giavDp~~g~---ly~td-~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~  560 (699)
T 1n7d_A          486 KRKTLFRE-QGSKPRAIVVDPVHGF---MYWTD-WGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK  560 (699)
T ss_dssp             CEEEECCC-SSCCCCCEECCSSSSC---CEECC-CSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETT
T ss_pred             ceEEEEeC-CCCCcceEEEccCCCc---EEEcc-cCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecC
Confidence            43333322 1223457888887664   33322 12236788887764322111111123456899999866665554 4


Q ss_pred             CCcEEEEECCCceEEEEeec-ccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490          321 SGDISIIDSSSLQVRTAVKK-AHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       321 dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~  381 (406)
                      .+.|..+++........+.. ........|++..+ .++++....+.|..++..+++.+..+
T Consensus       561 ~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i  621 (699)
T 1n7d_A          561 LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLL  621 (699)
T ss_dssp             TTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECC
T ss_pred             CCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEe
Confidence            67899999875333222211 11123445666544 44555556788999987776654433

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.99  E-value=0.0039  Score=54.65  Aligned_cols=143  Identities=13%  Similarity=0.220  Sum_probs=92.5

Q ss_pred             CCeEEEEeCC--CcceEeeeec------cC-CceeEEEE--ccC-CC-EEEEEeCCCCEEEEEcC-------CCeeeeec
Q 015490          188 NGNLRVFKWP--SLEIILNESE------AH-ASVKDLSF--SPD-GK-FLVSLGNRGPGRVWDLA-------SSAVATPL  247 (406)
Q Consensus       188 dg~i~vwd~~--~~~~~~~~~~------~~-~~i~~~~~--s~~-~~-~l~s~s~d~~i~iwd~~-------~~~~~~~~  247 (406)
                      +++|.+|++.  ++. +..+..      .. ..+..+++  +|. ++ ++++...+|.+..|++.       +.+.++++
T Consensus        98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f  176 (355)
T 3amr_A           98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF  176 (355)
T ss_dssp             CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence            5789999773  333 333311      11 46777888  664 44 67788889999999883       33556666


Q ss_pred             ccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC-----CceEEEEeeec--CCCeEEEEE--cCCCC-EEEE
Q 015490          248 AKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT-----TWKRIRTKQVV--REPVSSFNV--SADGK-LLAV  317 (406)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~-----~~~~~~~~~~~--~~~i~~~~~--sp~~~-~l~~  317 (406)
                      ...  ..+..|...+....   +   ..+.++..|+.+|.+     +++.+..+...  ...+..|++  .++++ +|++
T Consensus       177 ~lg--sq~EgcvvDd~~g~---L---yv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLiv  248 (355)
T 3amr_A          177 KMN--SQTEGMAADDEYGR---L---YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMA  248 (355)
T ss_dssp             ECS--SCEEEEEEETTTTE---E---EEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEE
T ss_pred             cCC--CCcceEEEcCCCCe---E---EEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEE
Confidence            543  35778888887764   2   233456668888865     34555444211  246788887  55666 6776


Q ss_pred             EeC-CCcEEEEECC-CceEEEEee
Q 015490          318 GTA-SGDISIIDSS-SLQVRTAVK  339 (406)
Q Consensus       318 ~~~-dg~i~i~d~~-~~~~~~~~~  339 (406)
                      ++. ++++.+||.. +.+.+..+.
T Consensus       249 SsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          249 SSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             EEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             EcCCCCEEEEEECCCCCcEEEEEE
Confidence            664 7789999997 667776663

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.99  E-value=0.0073  Score=53.18  Aligned_cols=233  Identities=11%  Similarity=0.059  Sum_probs=121.9

Q ss_pred             CCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEE
Q 015490          113 SDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLR  192 (406)
Q Consensus       113 ~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~  192 (406)
                      ...+.+|.|.+ +..++++..+  .|+.- .+.++....+...        ......+..+.+.+++..++++. +|.|.
T Consensus        79 ~~~~~~i~~~~-~~~~~~g~~g--~i~~S-~DgG~tW~~~~~~--------~~~~~~~~~i~~~~~~~~~~~~~-~g~v~  145 (327)
T 2xbg_A           79 DYRFNSVSFQG-NEGWIVGEPP--IMLHT-TDGGQSWSQIPLD--------PKLPGSPRLIKALGNGSAEMITN-VGAIY  145 (327)
T ss_dssp             CCEEEEEEEET-TEEEEEEETT--EEEEE-SSTTSSCEECCCC--------TTCSSCEEEEEEEETTEEEEEET-TCCEE
T ss_pred             CccEEEEEecC-CeEEEEECCC--eEEEE-CCCCCCceECccc--------cCCCCCeEEEEEECCCCEEEEeC-CccEE
Confidence            44678899986 4444444333  44432 2223222221110        01123466777777777666654 55442


Q ss_pred             EEeCCCcceEeee-eccCCceeEEEEccCCCEEEEEeCCCCEEE-EEcCCCeeeeecccCCcceEEEEEEEcCCCCceEE
Q 015490          193 VFKWPSLEIILNE-SEAHASVKDLSFSPDGKFLVSLGNRGPGRV-WDLASSAVATPLAKENDELFASCRFSPLNNEDYVL  270 (406)
Q Consensus       193 vwd~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~s~s~d~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  270 (406)
                      . ..+.++.-... ......+..+.+.+++.+++++. ++.+.. .|- .++.-..+.......+..+.+.+++..    
T Consensus       146 ~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~-gG~tW~~~~~~~~~~~~~~~~~~~g~~----  218 (327)
T 2xbg_A          146 R-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEP-GQTAWEPHNRTTSRRLHNMGFTPDGRL----  218 (327)
T ss_dssp             E-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECT-TCSSCEEEECCSSSCEEEEEECTTSCE----
T ss_pred             E-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCC-CCCceeECCCCCCCccceeEECCCCCE----
Confidence            2 12233322222 22334788999999988776654 444443 332 122212222223345778888887752    


Q ss_pred             EEEEEcCCCcEEEEEeCCCceEEEEeeec----CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeec--cccc
Q 015490          271 YIAAITDRGASIVTWNTTTWKRIRTKQVV----REPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKK--AHLG  344 (406)
Q Consensus       271 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~----~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~  344 (406)
                       +++  ..++.+++.+...++.-..+...    ...+.++.+.+++..++++. +|.+ ++..+.++.-..+..  .+..
T Consensus       219 -~~~--~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~  293 (327)
T 2xbg_A          219 -WMI--VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPS  293 (327)
T ss_dssp             -EEE--ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSS
T ss_pred             -EEE--eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCC
Confidence             222  23567776643323332222211    23588999998888777654 6766 455554543333321  1235


Q ss_pred             ceEEEEEcCCCCeEEEEECCCcEEEEE
Q 015490          345 IVTALAFSYDSRALVSASMDSSVRVTV  371 (406)
Q Consensus       345 ~v~~~~~sp~~~~l~s~s~dg~i~iw~  371 (406)
                      .+.++.|.++++ +++++.+|.|.-++
T Consensus       294 ~~~~v~~~~~~~-~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          294 NFYKILFFSPDQ-GFILGQKGILLRYV  319 (327)
T ss_dssp             CCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred             CeEEEEEECCCc-eEEEcCCceEEEEc
Confidence            678888876554 66667889765554

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.97  E-value=0.0066  Score=54.09  Aligned_cols=235  Identities=12%  Similarity=0.083  Sum_probs=120.8

Q ss_pred             CCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCC---CCEEEEeeC--
Q 015490          113 SDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSE---GTIFAAGSE--  187 (406)
Q Consensus       113 ~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~~~~--  187 (406)
                      -.....|+|.|+|+.+++-..  .+|+.++. ++.  ..+..   ..  ...........++++|+   +..|+++..  
T Consensus        28 l~~P~~ia~~pdG~l~V~e~~--g~I~~~d~-~G~--~~~~~---~~--v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~   97 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVTERP--GRLVLISP-SGK--KLVAS---FD--VANVGEAGLLGLALHPEFPKKSWVYLYASYF   97 (354)
T ss_dssp             CSCEEEEEEEETTEEEEEETT--TEEEEECS-SCE--EEEEE---CC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEEE
T ss_pred             CCCCeEEEEcCCCeEEEEeCC--CEEEEEeC-CCc--eEeec---cc--eeecCCCceeeEEeCCCCCcCCEEEEEEecc
Confidence            355789999999985555434  46666653 222  11100   00  01123356789999997   444444332  


Q ss_pred             --C----CeEEEEeCCCc-------ceEee-eecc-CCceeEEEEccCCCEEEEEeCC-------------CCEEEEEcC
Q 015490          188 --N----GNLRVFKWPSL-------EIILN-ESEA-HASVKDLSFSPDGKFLVSLGNR-------------GPGRVWDLA  239 (406)
Q Consensus       188 --d----g~i~vwd~~~~-------~~~~~-~~~~-~~~i~~~~~s~~~~~l~s~s~d-------------~~i~iwd~~  239 (406)
                        +    ..|..|+....       +.+.. +... ......++|.|||.+.++.+..             +.|.-++..
T Consensus        98 ~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d  177 (354)
T 3a9g_A           98 AEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE  177 (354)
T ss_dssp             CGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT
T ss_pred             CCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC
Confidence              2    56777776543       11111 2211 1134779999999866664431             344444443


Q ss_pred             CCee--------eeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCC-cEEEEEeCCC--------c--------eEEE
Q 015490          240 SSAV--------ATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRG-ASIVTWNTTT--------W--------KRIR  294 (406)
Q Consensus       240 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~i~~~d~~~--------~--------~~~~  294 (406)
                       ++.        ...+..... ....++|+|+...   +|+.-.+... ..|.+...-.        +        .++.
T Consensus       178 -G~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~---l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~  252 (354)
T 3a9g_A          178 -GRPPADNPFPNSPIWSYGHR-NPQGIDWHRASGV---MVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVI  252 (354)
T ss_dssp             -SCCCTTSSSTTCCEEEECCS-CCCEEEECTTTCC---EEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred             -CCCCCCCCCCCCcEEEEccC-CcceEEEeCCCCC---EEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEe
Confidence             220        011111111 1346889994333   3333222211 2333332110        0        1222


Q ss_pred             EeeecCCCeEEEEEc-------CCCCEEEEEeCCCcEEEEECCCc-eEE--EEeecccccceEEEEEcCCCCeEEEEE
Q 015490          295 TKQVVREPVSSFNVS-------ADGKLLAVGTASGDISIIDSSSL-QVR--TAVKKAHLGIVTALAFSYDSRALVSAS  362 (406)
Q Consensus       295 ~~~~~~~~i~~~~~s-------p~~~~l~~~~~dg~i~i~d~~~~-~~~--~~~~~~~~~~v~~~~~sp~~~~l~s~s  362 (406)
                      .+.........++|.       .+|+++++....+.|...++... +..  ..+.......+..+++.|||.++++..
T Consensus       253 ~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          253 DTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             ECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             ecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            221112456788884       46767666666778988888753 322  223212245688999999998766654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.95  E-value=0.0084  Score=52.79  Aligned_cols=239  Identities=13%  Similarity=0.119  Sum_probs=126.7

Q ss_pred             CCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEE
Q 015490          113 SDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLR  192 (406)
Q Consensus       113 ~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~  192 (406)
                      ...+.+|.|.+++..++++..+  .|+.. ...++.-..+...       .-.....+.++.|++ +..+++ +.++.|.
T Consensus        35 ~~~~~~v~~~~~~~~~~~G~~g--~i~~s-~DgG~tW~~~~~~-------~~~~~~~~~~i~~~~-~~~~~~-g~~g~i~  102 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLVGVNA--TLMET-RDGGQTWEPRTLV-------LDHSDYRFNSVSFQG-NEGWIV-GEPPIML  102 (327)
T ss_dssp             SSCEEEEEESSSSCEEEEETTT--EEEEE-SSTTSSCEECCCC-------CSCCCCEEEEEEEET-TEEEEE-EETTEEE
T ss_pred             CCcEEEEEECCCCcEEEEcCCC--eEEEe-CCCCCCCeECCCC-------CCCCCccEEEEEecC-CeEEEE-ECCCeEE
Confidence            3468899998877777755443  34432 2222222221110       001124578888876 444444 5566554


Q ss_pred             EEeCCCcceEeeee---ccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceE
Q 015490          193 VFKWPSLEIILNES---EAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYV  269 (406)
Q Consensus       193 vwd~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (406)
                      . ..+.++.-....   .....+..+.+.++++.++++ .++.|.. ....++.-..+.......+..+.+.+++.    
T Consensus       103 ~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~----  175 (327)
T 2xbg_A          103 H-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGE----  175 (327)
T ss_dssp             E-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSC----
T ss_pred             E-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCc----
Confidence            3 223343322222   122356778887777655544 4554432 11223322222222333577888988765    


Q ss_pred             EEEEEEcCCCcEEEEEeC--CCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecc---ccc
Q 015490          270 LYIAAITDRGASIVTWNT--TTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKA---HLG  344 (406)
Q Consensus       270 l~~~~~~~~~~~i~~~d~--~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~  344 (406)
                        +++.+......+-.|-  .+++.+.  ......+..+.++++++.+++ +.+|.+++.+.+.++.-..+...   +..
T Consensus       176 --~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~  250 (327)
T 2xbg_A          176 --YVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSV  250 (327)
T ss_dssp             --EEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCS
T ss_pred             --EEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCc
Confidence              2334444455555563  4555542  233467889999999876654 56787777653334433333211   223


Q ss_pred             ceEEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490          345 IVTALAFSYDSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       345 ~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      .+.++.+.+++..++++ .++.| ++..+.++.
T Consensus       251 ~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~t  281 (327)
T 2xbg_A          251 GFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQT  281 (327)
T ss_dssp             CEEEEEESSSSCEEEEE-STTCE-EEESSTTSS
T ss_pred             ceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcc
Confidence            58899999887766654 56766 444444544

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.90  E-value=0.0023  Score=59.24  Aligned_cols=196  Identities=7%  Similarity=0.050  Sum_probs=114.3

Q ss_pred             cEEEEEECCC-C-CEEEEeeCCCeEEEEeCCCcceEeeeeccC---CceeEEEE-------ccCCCEEEEEeCCC-----
Q 015490          169 QQLALTFDSE-G-TIFAAGSENGNLRVFKWPSLEIILNESEAH---ASVKDLSF-------SPDGKFLVSLGNRG-----  231 (406)
Q Consensus       169 ~v~~~~~s~~-g-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~i~~~~~-------s~~~~~l~s~s~d~-----  231 (406)
                      ....|+|+|. + +++++-...+.|++.|+.++..........   .....++|       ++++++|+++...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            4678999983 4 444444444678999988766554333222   25789999       99999777776543     


Q ss_pred             --CEEEEEcCC-Ceee-----eecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCC-------CceE----
Q 015490          232 --PGRVWDLAS-SAVA-----TPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTT-------TWKR----  292 (406)
Q Consensus       232 --~i~iwd~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~-------~~~~----  292 (406)
                        .+.+++... +...     ..+..  ......++++|++..     +.++...++.|+.+|+.       ++..    
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~--~~~p~giavdp~~g~-----LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~  292 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAA--YKQCNGATIHPINGE-----LYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPI  292 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEE--ESCCCCEEECTTTCC-----EEEEETTTTEEEEECHHHHHHHHHTTCCCCCB
T ss_pred             CceEEEEecCCCCceeecccceeecc--CCCceEEEEcCCCCe-----EEEEECCCCEEEEEecccccccccCceeeccc
Confidence              255665333 2221     11111  112336788887665     34445677899999987       4442    


Q ss_pred             -------EEE-eee-cCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEC--CCceEE--EEeec--ccc------------c
Q 015490          293 -------IRT-KQV-VREPVSSFNVSADGKLLAVGT-ASGDISIIDS--SSLQVR--TAVKK--AHL------------G  344 (406)
Q Consensus       293 -------~~~-~~~-~~~~i~~~~~sp~~~~l~~~~-~dg~i~i~d~--~~~~~~--~~~~~--~~~------------~  344 (406)
                             ... +.. .......++|+|+|++|+.+. ..+.|+.++.  .++...  ..+..  +..            .
T Consensus       293 ~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~  372 (496)
T 3kya_A          293 VKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMN  372 (496)
T ss_dssp             GGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCS
T ss_pred             ccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccC
Confidence                   112 222 224468999999999766654 4678888654  333221  12210  000            1


Q ss_pred             ceE-EEEEc-------CCCCeEEEEECCCcEEEEE
Q 015490          345 IVT-ALAFS-------YDSRALVSASMDSSVRVTV  371 (406)
Q Consensus       345 ~v~-~~~~s-------p~~~~l~s~s~dg~i~iw~  371 (406)
                      ... .++..       ++|.++++-+..++|+.++
T Consensus       373 ~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~  407 (496)
T 3kya_A          373 NPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT  407 (496)
T ss_dssp             SEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC
T ss_pred             CCeEEEEEccccccccCCCeEEEEECCCCEEEEEe
Confidence            233 44454       4566666666778888887

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.90  E-value=0.012  Score=52.81  Aligned_cols=240  Identities=11%  Similarity=0.105  Sum_probs=148.7

Q ss_pred             eEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeC
Q 015490          117 YRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKW  196 (406)
Q Consensus       117 ~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~  196 (406)
                      -+.-.+|..+.++.=....++|++++..              ..++.+.....|.-=.|-.+. .|+..+ +..|+-|++
T Consensus        69 dsAIMnP~~~iiALrag~~lQiFnle~K--------------~klks~~~~e~VvfWkWis~~-~l~lVT-~taVyHWsi  132 (494)
T 1bpo_A           69 DSAIMNPASKVIALKAGKTLQIFNIEMK--------------SKMKAHTMTDDVTFWKWISLN-TVALVT-DNAVYHWSM  132 (494)
T ss_dssp             SEEEECSSSSCEEEEETTEEEEEETTTT--------------EEEEEEECSSCCCEEEEEETT-EEEEEC-SSEEEEEES
T ss_pred             ceeeeCCCCcEEEEecCCeEEEEchHHh--------------hhhcceecCCCceEEEecCCC-eEEEEc-CCeeEEecc
Confidence            3556788888777767888899887642              233333334445444554433 444443 458999999


Q ss_pred             CCcc-eEeeeeccCC----ceeEEEEccCCCEEEEEeC-------CCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCC
Q 015490          197 PSLE-IILNESEAHA----SVKDLSFSPDGKFLVSLGN-------RGPGRVWDLASSAVATPLAKENDELFASCRFSPLN  264 (406)
Q Consensus       197 ~~~~-~~~~~~~~~~----~i~~~~~s~~~~~l~s~s~-------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (406)
                      +... +...+..|..    .|.....+++.++++..+-       .|.+.+|..+.+. .+.+.+| ....  ..+..++
T Consensus       133 ~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGh-aa~F--~~~~~~g  208 (494)
T 1bpo_A          133 EGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGH-AASF--AQFKMEG  208 (494)
T ss_dssp             SSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCS-EEEE--EEEECTT
T ss_pred             cCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheee-eeee--EEEecCC
Confidence            7533 3333333322    6777777899998775542       4678889886543 3444443 2222  2233333


Q ss_pred             C-CceEEEEEEEc-CCCcEEEEEeCCCc--------eEEEEee-ec---CCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 015490          265 N-EDYVLYIAAIT-DRGASIVTWNTTTW--------KRIRTKQ-VV---REPVSSFNVSADGKLLAVGTASGDISIIDSS  330 (406)
Q Consensus       265 ~-~~~~l~~~~~~-~~~~~i~~~d~~~~--------~~~~~~~-~~---~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~  330 (406)
                      . ....+++.+.. ...+.+++.++...        +....+. ..   ..-..++..|+.-..++.-+.-|.+++||+.
T Consensus       209 ~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDle  288 (494)
T 1bpo_A          209 NAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLE  288 (494)
T ss_dssp             CSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETT
T ss_pred             CCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecc
Confidence            2 22234444432 23478999988542        1111111 11   2334678889988899999999999999999


Q ss_pred             CceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490          331 SLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       331 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      ++..+..-. -....|...+-.....-++.....|.|.--.+++.+-
T Consensus       289 Tgt~i~~nr-Is~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~i  334 (494)
T 1bpo_A          289 TGTCIYMNR-ISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI  334 (494)
T ss_dssp             TCCEEEEEE-CCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTH
T ss_pred             cceeeeeec-ccCCceEEecccCCCCcEEEEccCceEEEEEEccccc
Confidence            999988764 5566676666665555677777999998888877655

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.89  E-value=0.016  Score=55.88  Aligned_cols=202  Identities=11%  Similarity=0.034  Sum_probs=117.2

Q ss_pred             cCcEEEEEECCCCCEEE-EeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEE-eCCCCEEEEEcCCCeee
Q 015490          167 VGQQLALTFDSEGTIFA-AGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSL-GNRGPGRVWDLASSAVA  244 (406)
Q Consensus       167 ~~~v~~~~~s~~g~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-s~d~~i~iwd~~~~~~~  244 (406)
                      -..+..++|.+.+..|+ +-...+.|+.++++.......+...-.....+++.+.+..|+.+ +..+.|.+.++.... .
T Consensus       348 l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~-~  426 (619)
T 3s94_A          348 IRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM-R  426 (619)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-C
T ss_pred             cCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe-E
Confidence            35678899998554444 44457889999986543332232222356789998755555544 456789999986543 2


Q ss_pred             eecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC-CCc
Q 015490          245 TPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA-SGD  323 (406)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~  323 (406)
                      ..+....-.....+++.|....   +|++-.+ ....|...++............-.....++++++++.|+.+.. .+.
T Consensus       427 ~~l~~~~l~~P~~iavdp~~G~---ly~tD~g-~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~  502 (619)
T 3s94_A          427 KILISEDLEEPRAIVLDPMVGY---MYWTDWG-EIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDK  502 (619)
T ss_dssp             EEEECTTCCSEEEEEEETTTTE---EEEEECS-SSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             EEEEECCCCCeeeEEEEcCCCc---EEEecCC-CCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCE
Confidence            2332222334678999997553   4544332 3467777777543322222222346789999998777777655 577


Q ss_pred             EEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCC
Q 015490          324 ISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDK  375 (406)
Q Consensus       324 i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~  375 (406)
                      |..+++........+. ..-....+++...+ ..+.+-...+.|...+..++
T Consensus       503 I~~~~~dG~~~~~~~~-~~l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g  552 (619)
T 3s94_A          503 IEVMNTDGTGRRVLVE-DKIPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSA  552 (619)
T ss_dssp             EEEEESSSCCCEEEEE-CCCCSSCCEEEETT-EEEEECTTSSCEEEEESSSC
T ss_pred             EEEEecCCCceEEEec-cCCCCcEEEEEECC-EEEEeecCCCeEEEEEcCCC
Confidence            9999986443322221 12222345555433 33333334456666666655

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.88  E-value=0.021  Score=55.06  Aligned_cols=203  Identities=11%  Similarity=-0.038  Sum_probs=122.6

Q ss_pred             CCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCC-EEEEeeCCCeE
Q 015490          113 SDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGT-IFAAGSENGNL  191 (406)
Q Consensus       113 ~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~i  191 (406)
                      -..+..++|++.+..|+.+.-..-+|+.++.........+         .  .+-.....+++.+.+. ++++-...+.|
T Consensus        36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~---------~--~g~~~P~GlAvD~~~~~LY~tD~~~~~I  104 (628)
T 4a0p_A           36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVV---------E--FGLDYPEGMAVDWLGKNLYWADTGTNRI  104 (628)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE---------C--SSCSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred             CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEE---------e--CCCCCcceEEEEeCCCEEEEEECCCCEE
Confidence            3467899999988888877644447777765432111110         0  0113456788876554 44555557889


Q ss_pred             EEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeC--CCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceE
Q 015490          192 RVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGN--RGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYV  269 (406)
Q Consensus       192 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (406)
                      .+.+++...........-.....+++.|....|+.+..  .+.|...++..........  .......+++++++..   
T Consensus       105 ~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~--~~~~P~GlalD~~~~~---  179 (628)
T 4a0p_A          105 EVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP--NVGRANGLTIDYAKRR---  179 (628)
T ss_dssp             EEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC--SCSSEEEEEEETTTTE---
T ss_pred             EEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC--CCCCcceEEEccccCE---
Confidence            99998654332222233346789999996666666552  4677777775443322222  2334678999998775   


Q ss_pred             EEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEE
Q 015490          270 LYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVR  335 (406)
Q Consensus       270 l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~  335 (406)
                      +|+  +....+.|..+|+..... ..+.........+++.. +...++-...+.|...|..+++..
T Consensus       180 LY~--aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~  241 (628)
T 4a0p_A          180 LYW--TDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNR  241 (628)
T ss_dssp             EEE--EETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSC
T ss_pred             EEE--EECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCce
Confidence            443  335678899999876433 23333334456788765 333344344788999997666533

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.78  E-value=0.015  Score=51.45  Aligned_cols=185  Identities=10%  Similarity=0.112  Sum_probs=109.6

Q ss_pred             EEEEEECCCCCEEEEe------------eCCCeEEEEeCCC--cce-Eeeeecc-----CCceeEEEEcc--CCC-EEEE
Q 015490          170 QLALTFDSEGTIFAAG------------SENGNLRVFKWPS--LEI-ILNESEA-----HASVKDLSFSP--DGK-FLVS  226 (406)
Q Consensus       170 v~~~~~s~~g~~l~~~------------~~dg~i~vwd~~~--~~~-~~~~~~~-----~~~i~~~~~s~--~~~-~l~s  226 (406)
                      .-.+...|+|..++++            ..+|.|.++|..+  ++. ...+.+.     .-....+.+.+  ++. +|++
T Consensus        52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V  131 (355)
T 3sre_A           52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  131 (355)
T ss_dssp             CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence            3456678887655554            2689999999873  222 1122221     12566777765  454 4555


Q ss_pred             EeC---CCCEEEEEcCCC--e--eeeecccCCcceEEEEEEEcCCCCceEEEEEEEc----------------CCCcEEE
Q 015490          227 LGN---RGPGRVWDLASS--A--VATPLAKENDELFASCRFSPLNNEDYVLYIAAIT----------------DRGASIV  283 (406)
Q Consensus       227 ~s~---d~~i~iwd~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------~~~~~i~  283 (406)
                      +..   +.++.+|++...  .  .+..+....-.....+.+.+++.    +| +...                ...+.|+
T Consensus       132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~----fy-vt~~~~ftd~~~~~~e~~~~~~~g~vy  206 (355)
T 3sre_A          132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH----FY-ATNDHYFIDPYLKSWEMHLGLAWSFVT  206 (355)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE----EE-EEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred             EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC----EE-ecCCcEeCCcccccchhhccCCccEEE
Confidence            532   457888877543  2  22334433344577899999886    12 2211                1246777


Q ss_pred             EEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCC-ceE--EEEeecccccceEEEEEcC-CCCeE
Q 015490          284 TWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA-SGDISIIDSSS-LQV--RTAVKKAHLGIVTALAFSY-DSRAL  358 (406)
Q Consensus       284 ~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~~-~~~--~~~~~~~~~~~v~~~~~sp-~~~~l  358 (406)
                      .+|...  .. .+...-.....++|+||++.|+++.. .+.|+.|++.. ++.  ...+.  ..+....+++.+ +|++.
T Consensus       207 r~d~~~--~~-~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~--~~g~PDGi~vD~e~G~lw  281 (355)
T 3sre_A          207 YYSPND--VR-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS--FDTLVDNISVDPVTGDLW  281 (355)
T ss_dssp             EECTTC--CE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE--CSSEEEEEEECTTTCCEE
T ss_pred             EEECCe--EE-EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe--CCCCCceEEEeCCCCcEE
Confidence            777642  22 22222244689999999998887764 68899999863 322  22332  345677899999 59988


Q ss_pred             EEEECC
Q 015490          359 VSASMD  364 (406)
Q Consensus       359 ~s~s~d  364 (406)
                      +++..+
T Consensus       282 va~~~~  287 (355)
T 3sre_A          282 VGCHPN  287 (355)
T ss_dssp             EEEESC
T ss_pred             EEecCC
Confidence            776544

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.73  E-value=0.0057  Score=53.13  Aligned_cols=160  Identities=9%  Similarity=0.106  Sum_probs=107.0

Q ss_pred             ceeEEEEccCCCEEEEEe-CCCCEEEEEcCCCeeee-eccc-----CCcceEEEEEE---EcCCCCceEEEEEEEc----
Q 015490          211 SVKDLSFSPDGKFLVSLG-NRGPGRVWDLASSAVAT-PLAK-----ENDELFASCRF---SPLNNEDYVLYIAAIT----  276 (406)
Q Consensus       211 ~i~~~~~s~~~~~l~s~s-~d~~i~iwd~~~~~~~~-~~~~-----~~~~~~~~~~~---~~~~~~~~~l~~~~~~----  276 (406)
                      --.+++|++....+..++ ..++|..||...+.... .+..     ........+.|   .|+++    |++++..    
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~gr----L~vv~~~~~af   89 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKR----LFAVMKNAKSF   89 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCE----EEEEEEETTTT
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCc----EEEEEcccccc
Confidence            446789988666666666 78999999997554332 2221     11224578888   57643    3332221    


Q ss_pred             -------CCCcEEEEEeCC---CceEEEEeeec------------C-CCeEEEEEcCCCCEEEEEeCC-CcEEEEECCCc
Q 015490          277 -------DRGASIVTWNTT---TWKRIRTKQVV------------R-EPVSSFNVSADGKLLAVGTAS-GDISIIDSSSL  332 (406)
Q Consensus       277 -------~~~~~i~~~d~~---~~~~~~~~~~~------------~-~~i~~~~~sp~~~~l~~~~~d-g~i~i~d~~~~  332 (406)
                             +.+..|..+|+.   +++.+......            . .....++..++|+..++++.. +.|..++....
T Consensus        90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~  169 (334)
T 2p9w_A           90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK  169 (334)
T ss_dssp             CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred             cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence                   136789999999   77765554421            1 247899999999999988888 88888887643


Q ss_pred             eEEEEeec-c----cccceEEEEEcCCCCeEEEEECCCcEEEEEecCC
Q 015490          333 QVRTAVKK-A----HLGIVTALAFSYDSRALVSASMDSSVRVTVIEDK  375 (406)
Q Consensus       333 ~~~~~~~~-~----~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~  375 (406)
                       ....+.. .    .....+.|+++|+|+.|++...+|.+..+|+.+.
T Consensus       170 -~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          170 -TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             -CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             -EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence             2222210 1    1122569999999999888877999999998754

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.67  E-value=0.01  Score=51.49  Aligned_cols=199  Identities=8%  Similarity=0.029  Sum_probs=112.2

Q ss_pred             EccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCC-----------
Q 015490          121 IHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSEN-----------  188 (406)
Q Consensus       121 ~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-----------  188 (406)
                      |+.++.+++... ...-+||.++..... ..++.-               -.+--++++|.+|+.....           
T Consensus        21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~---------------~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~   84 (302)
T 3s25_A           21 FCESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN---------------DTAMYINADKNYVYYVRNNNQKITSQTFFS   84 (302)
T ss_dssp             EEEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE---------------EEEEEEEECSSEEEEEEECC------CCSS
T ss_pred             EEEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccC---------------CceeeEEEcCCEEEEEECCCCcccccceec
Confidence            445778887775 223489988865332 222211               1134557888888777543           


Q ss_pred             ---CeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEe--CCC--CEEEEEcCCCeeeeecccCCcceEEEEEEE
Q 015490          189 ---GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLG--NRG--PGRVWDLASSAVATPLAKENDELFASCRFS  261 (406)
Q Consensus       189 ---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  261 (406)
                         ..|+..+++..+.. .+...    ....|++++++|+...  .++  .|...++.... ...+..+..     .+++
T Consensus        85 ~n~~~Iy~i~~dg~~~~-~l~~~----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~-----~~~~  153 (302)
T 3s25_A           85 YDRNSLCRIKRNGHGST-VLDPD----PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL-----FTCN  153 (302)
T ss_dssp             CCSEEEEEEETTSCCCE-EEECS----CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC-----CCSE
T ss_pred             cCCCeEEEEeCCCCcce-EeecC----CccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc-----eEee
Confidence               36777777665432 22221    2236788899888876  333  45555664333 333332211     4567


Q ss_pred             cCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCC--CcEEEEECCCceEEEEee
Q 015490          262 PLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAS--GDISIIDSSSLQVRTAVK  339 (406)
Q Consensus       262 ~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~  339 (406)
                      ++++.   ++  .+......|+..++..+.....+.   +... ..++|++++|+.....  ..|..-++..... ..+.
T Consensus       154 ~~g~~---iy--~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt  223 (302)
T 3s25_A          154 TSDRY---FY--YNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VVLT  223 (302)
T ss_dssp             EETTE---EE--EECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EECS
T ss_pred             EECCE---EE--EEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EEEe
Confidence            88875   33  333457889999988765443332   2222 3466999999877654  3577777765443 2332


Q ss_pred             cccccceEEEEEcCCCCeEEEE
Q 015490          340 KAHLGIVTALAFSYDSRALVSA  361 (406)
Q Consensus       340 ~~~~~~v~~~~~sp~~~~l~s~  361 (406)
                         ...+  ..|+|++.+|.-+
T Consensus       224 ---~~~~--~~~~~~g~~Iy~~  240 (302)
T 3s25_A          224 ---EANI--EHYNVYGSLIFYQ  240 (302)
T ss_dssp             ---CSCE--EEEEEETTEEEEE
T ss_pred             ---CCCc--ceEEECCCEEEEE
Confidence               1122  2367777777654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.61  E-value=0.021  Score=50.56  Aligned_cols=216  Identities=15%  Similarity=0.155  Sum_probs=114.3

Q ss_pred             EEecCCCCceEEEEccCCCeEEEEe-----------cCCeEEEEEecccc-cceeecceeccceeeeccc-ccCcEEEEE
Q 015490          108 ELRTDSDLPYRMAIHPHGDGIICAL-----------QNSCRLFEWDEVEN-TEIRRLGVKISEKVLSQLE-NVGQQLALT  174 (406)
Q Consensus       108 ~~~~h~~~v~~~~~sp~~~~l~~~~-----------~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~v~~~~  174 (406)
                      .+.+-......++..|+|..+++++           +...+||.++..+. .....+...  ..   .+. ..-....+.
T Consensus        44 ~i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~--g~---~~~~~~f~PhGi~  118 (355)
T 3sre_A           44 LVKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEII--GN---TLDISSFNPHGIS  118 (355)
T ss_dssp             ECTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEE--CS---SCCGGGCCEEEEE
T ss_pred             EeCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEcc--CC---CCCcCceeeeeeE
Confidence            3433344567788888776555541           24667888886532 112222211  00   001 112455666


Q ss_pred             ECC--CCC--EEEEeeC--CCeEEEEeCCCcc-e---EeeeeccC-CceeEEEEccCCCEEEEEeC--------------
Q 015490          175 FDS--EGT--IFAAGSE--NGNLRVFKWPSLE-I---ILNESEAH-ASVKDLSFSPDGKFLVSLGN--------------  229 (406)
Q Consensus       175 ~s~--~g~--~l~~~~~--dg~i~vwd~~~~~-~---~~~~~~~~-~~i~~~~~s~~~~~l~s~s~--------------  229 (406)
                      +.+  ++.  ++++-..  +.+|.+|+++... .   +..+.+.. ...+++.+.++|++.++...              
T Consensus       119 ~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~  198 (355)
T 3sre_A          119 TFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHL  198 (355)
T ss_dssp             EEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHT
T ss_pred             EEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhc
Confidence            644  453  4444333  5678888875432 1   22222211 26789999999987766541              


Q ss_pred             ---CCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC-ceE--EEEeeecCCCe
Q 015490          230 ---RGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT-WKR--IRTKQVVREPV  303 (406)
Q Consensus       230 ---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~-~~~--~~~~~~~~~~i  303 (406)
                         .+.+.-+|.  ++.. .+. ..-.....++|+|+++.   +  .++.+..+.|+.|++.. ++.  .+.+. ..+..
T Consensus       199 ~~~~g~vyr~d~--~~~~-~~~-~~l~~pNGia~spDg~~---l--Yvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~P  268 (355)
T 3sre_A          199 GLAWSFVTYYSP--NDVR-VVA-EGFDFANGINISPDGKY---V--YIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLV  268 (355)
T ss_dssp             TCCCEEEEEECT--TCCE-EEE-EEESSEEEEEECTTSSE---E--EEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEE
T ss_pred             cCCccEEEEEEC--CeEE-Eee-cCCcccCcceECCCCCE---E--EEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCC
Confidence               133444443  3222 221 11223578999999985   3  33445568899999853 322  22332 23556


Q ss_pred             EEEEEcC-CCCEEEEEeCC-CcEEEEECC--CceEEEEe
Q 015490          304 SSFNVSA-DGKLLAVGTAS-GDISIIDSS--SLQVRTAV  338 (406)
Q Consensus       304 ~~~~~sp-~~~~l~~~~~d-g~i~i~d~~--~~~~~~~~  338 (406)
                      -.+++++ +|++.+++..+ +.|..|+..  .+..+..+
T Consensus       269 DGi~vD~e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI  307 (355)
T 3sre_A          269 DNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRI  307 (355)
T ss_dssp             EEEEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEE
T ss_pred             ceEEEeCCCCcEEEEecCCceEEEEECCCCCCCCEEEEE
Confidence            8899999 59877766544 345445543  24444444

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.59  E-value=0.075  Score=54.98  Aligned_cols=174  Identities=15%  Similarity=0.184  Sum_probs=103.8

Q ss_pred             eEEEEeCCCcceEeeeeccCC-ceeEEE---EccC-CCEEEEEe----------CCCCEEEEEcCCCeeeeecccCCcce
Q 015490          190 NLRVFKWPSLEIILNESEAHA-SVKDLS---FSPD-GKFLVSLG----------NRGPGRVWDLASSAVATPLAKENDEL  254 (406)
Q Consensus       190 ~i~vwd~~~~~~~~~~~~~~~-~i~~~~---~s~~-~~~l~s~s----------~d~~i~iwd~~~~~~~~~~~~~~~~~  254 (406)
                      .|++.|-.+.+.+..+.-... .+.+++   |..+ ..+|++|+          ..|.|++|++..++............
T Consensus       808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~  887 (1158)
T 3ei3_A          808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA  887 (1158)
T ss_dssp             EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred             EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence            477777777766555443333 445544   3332 46888876          24779999997554433333333445


Q ss_pred             EEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEE-eeecCCCeEEEEEcCCCCEEEEEeCCCcEEEE--ECCC
Q 015490          255 FASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRT-KQVVREPVSSFNVSADGKLLAVGTASGDISII--DSSS  331 (406)
Q Consensus       255 ~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~-~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~--d~~~  331 (406)
                      +++++--  +.+    ++++.   +..|++|++...+.++. .... ..+..+.....++++++|..-..|.++  +...
T Consensus       888 v~al~~~--~g~----Lla~i---g~~l~vy~l~~~~~L~~~~~~~-~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~  957 (1158)
T 3ei3_A          888 VYSMVEF--NGK----LLASI---NSTVRLYEWTTEKELRTECNHY-NNIMALYLKTKGDFILVGDLMRSVLLLAYKPME  957 (1158)
T ss_dssp             EEEEEEE--TTE----EEEEE---TTEEEEEEECTTSCEEEEEEEC-CCSCEEEEEEETTEEEEEESSBCEEEEEEETTT
T ss_pred             CEEEeee--CCE----EEEEc---CCEEEEEECCCCceEEEEeecc-ccEEEEEEeccCCEEEEEEhhheEEEEEEEcCC
Confidence            6555433  222    23332   57899999876554431 1112 123333333457899999887777664  4445


Q ss_pred             ceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490          332 LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIED  374 (406)
Q Consensus       332 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~  374 (406)
                      .+....-...+..+++++.+-.++ .++.+..+|.+.+.....
T Consensus       958 ~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          958 GNFEEIARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             TEEEEEEECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred             CeEEEEEeecccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence            554444433566788899887654 677788999999998865

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.56  E-value=0.014  Score=50.69  Aligned_cols=187  Identities=13%  Similarity=0.068  Sum_probs=94.4

Q ss_pred             CCCEEEEeeCC----CeEEEEeCCCcceEee--eeccCCceeEEEEccCCCEEEEEeCC------CCEEEEEcCCCeeee
Q 015490          178 EGTIFAAGSEN----GNLRVFKWPSLEIILN--ESEAHASVKDLSFSPDGKFLVSLGNR------GPGRVWDLASSAVAT  245 (406)
Q Consensus       178 ~g~~l~~~~~d----g~i~vwd~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~s~s~d------~~i~iwd~~~~~~~~  245 (406)
                      ++.+++.|+.+    ..+.+||..+.+-...  +.........+.+  +++.++.|+.+      ..+.+||..+.+-..
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~  132 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT  132 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence            66777888754    6789999887654322  1111111122222  66677777654      468999998775433


Q ss_pred             ecccCCcceEEEEEEEcCCCCceEEEEEEEcCC-------CcEEEEEeCCCceEEEEeee--cCCCeEEEEEcCCCCEEE
Q 015490          246 PLAKENDELFASCRFSPLNNEDYVLYIAAITDR-------GASIVTWNTTTWKRIRTKQV--VREPVSSFNVSADGKLLA  316 (406)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~i~~~d~~~~~~~~~~~~--~~~~i~~~~~sp~~~~l~  316 (406)
                      .-.......-.++... ++.    +|++.....       ...+.+||+.+.+-...-..  ....-..+.+  +++.++
T Consensus       133 ~~~~p~~r~~~~~~~~-~~~----iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v  205 (306)
T 3ii7_A          133 KPSMLTQRCSHGMVEA-NGL----IYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFA  205 (306)
T ss_dssp             ECCCSSCCBSCEEEEE-TTE----EEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEE
T ss_pred             CCCCcCCcceeEEEEE-CCE----EEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEE
Confidence            2111111111112222 332    333221111       35588999887643222111  1111122222  566777


Q ss_pred             EEeCC-----CcEEEEECCCceEEEEeeccc-ccceEEEEEcCCCCeEEEEECC-----CcEEEEEecCC
Q 015490          317 VGTAS-----GDISIIDSSSLQVRTAVKKAH-LGIVTALAFSYDSRALVSASMD-----SSVRVTVIEDK  375 (406)
Q Consensus       317 ~~~~d-----g~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~s~s~d-----g~i~iw~~~~~  375 (406)
                      .|+.+     ..+.+||+.+.+-...-.... ......+.+  +++.++.|+.+     ..+.+||+.+.
T Consensus       206 ~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          206 VGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             ECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             EeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence            76653     458999998765332211011 111222222  67777888754     45788888764

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.48  E-value=0.015  Score=51.69  Aligned_cols=196  Identities=14%  Similarity=0.160  Sum_probs=103.8

Q ss_pred             CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcce--Eeeee---ccCCceeEEEEccC---CCEEEEEeC-C-----CCE
Q 015490          168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEI--ILNES---EAHASVKDLSFSPD---GKFLVSLGN-R-----GPG  233 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~--~~~~~---~~~~~i~~~~~s~~---~~~l~s~s~-d-----~~i  233 (406)
                      .....++|.|+|+++++ ..+|.|++++  +++.  +..+.   ........++|+|+   +..|+++.. .     +.|
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            34678999999986555 5679999998  3432  11111   12336789999998   555555433 2     568


Q ss_pred             EEEEcCCCe-----ee-eecc--cCCcceEEEEEEEcCCCCceEEEEEEEcC------------CCcEEEEEeCCCc---
Q 015490          234 RVWDLASSA-----VA-TPLA--KENDELFASCRFSPLNNEDYVLYIAAITD------------RGASIVTWNTTTW---  290 (406)
Q Consensus       234 ~iwd~~~~~-----~~-~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~i~~~d~~~~---  290 (406)
                      ..++...+.     .+ ..+.  .........++|.|++.    +|+. .++            ..+.|.-++....   
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~----Lyv~-~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~  182 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM----LYVT-TGEVYERELAQDLASLGGKILRLTPEGEPAP  182 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC----EEEE-CCCTTCGGGGGCTTCSSSEEEEECTTSSBCT
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC----EEEE-ECCCCCCccccCCCCCceEEEEEcCCCCCCC
Confidence            888876431     11 1122  11111235789999985    3333 221            1256777776530   


Q ss_pred             ---------eEEEEe-eecCCCeEEEEEcC-CCCEEEEEeCCCc--------EEEEECCC----------------ceEE
Q 015490          291 ---------KRIRTK-QVVREPVSSFNVSA-DGKLLAVGTASGD--------ISIIDSSS----------------LQVR  335 (406)
Q Consensus       291 ---------~~~~~~-~~~~~~i~~~~~sp-~~~~l~~~~~dg~--------i~i~d~~~----------------~~~~  335 (406)
                               .....+ .++ .....++|+| +++++++-...+.        |.+.....                ..+.
T Consensus       183 ~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~  261 (352)
T 2ism_A          183 GNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPL  261 (352)
T ss_dssp             TCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred             CCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCe
Confidence                     000111 122 2356789999 6665554333222        33322111                0111


Q ss_pred             EEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCC
Q 015490          336 TAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDK  375 (406)
Q Consensus       336 ~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~  375 (406)
                      ..+  .+......++| .+|.++++.-..+.|...+++..
T Consensus       262 ~~~--~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~  298 (352)
T 2ism_A          262 YFW--PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGE  298 (352)
T ss_dssp             EEC--TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEE
T ss_pred             Eec--CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCC
Confidence            122  12234567777 46766666556667777777644

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.46  E-value=0.0094  Score=51.62  Aligned_cols=184  Identities=10%  Similarity=0.059  Sum_probs=92.6

Q ss_pred             CCCEEEEeeCC-----CeEEEEeCCCcc---eEe--eeeccCCceeEEEEccCCCEEEEEeCC-----CCEEEEEcCCCe
Q 015490          178 EGTIFAAGSEN-----GNLRVFKWPSLE---IIL--NESEAHASVKDLSFSPDGKFLVSLGNR-----GPGRVWDLASSA  242 (406)
Q Consensus       178 ~g~~l~~~~~d-----g~i~vwd~~~~~---~~~--~~~~~~~~i~~~~~s~~~~~l~s~s~d-----~~i~iwd~~~~~  242 (406)
                      ++++++.|+.+     ..+.+||..+.+   -..  .+......-..+.+  +++.++.|+.+     ..+.+||..+.+
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~  139 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ  139 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence            56777787754     468999987765   222  22111111122222  56666666643     358899988765


Q ss_pred             eee--ecccCCcceEEEEEEEcCCCCceEEEEEEEcCC-----CcEEEEEeCCCceEEEE--eeecCCCeEEEEEcCCCC
Q 015490          243 VAT--PLAKENDELFASCRFSPLNNEDYVLYIAAITDR-----GASIVTWNTTTWKRIRT--KQVVREPVSSFNVSADGK  313 (406)
Q Consensus       243 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~i~~~d~~~~~~~~~--~~~~~~~i~~~~~sp~~~  313 (406)
                      -..  .+...... . ++... ++.    +|+  .++.     ...+..||+.+.+-...  +.........+.+  +++
T Consensus       140 W~~~~~~p~~r~~-~-~~~~~-~~~----iyv--~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~  208 (301)
T 2vpj_A          140 WSMLGDMQTAREG-A-GLVVA-SGV----IYC--LGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDH  208 (301)
T ss_dssp             EEEEEECSSCCBS-C-EEEEE-TTE----EEE--ECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE
T ss_pred             EEECCCCCCCccc-c-eEEEE-CCE----EEE--ECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCE
Confidence            432  22211111 1 12222 332    333  2322     25688999877543322  1111111222222  566


Q ss_pred             EEEEEeCC-----CcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECC-----CcEEEEEecCC
Q 015490          314 LLAVGTAS-----GDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMD-----SSVRVTVIEDK  375 (406)
Q Consensus       314 ~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d-----g~i~iw~~~~~  375 (406)
                      .++.|+.+     ..+.+||+.+.+-...-.......-.+++ .-+++.++.|+.+     ..+.+||+++.
T Consensus       209 i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          209 IYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGAT-VLRGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             EEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             EEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEE-EECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence            77777664     46899999876543322101111111222 2267777777765     35778887664

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.46  E-value=0.067  Score=49.28  Aligned_cols=112  Identities=11%  Similarity=0.209  Sum_probs=59.6

Q ss_pred             CCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCC---CCEEEEeeC---
Q 015490          114 DLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSE---GTIFAAGSE---  187 (406)
Q Consensus       114 ~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~~~~---  187 (406)
                      .....|+|.|+|+.+++-..+ .+|+.++..++.......+   ...+...........++|+|+   +..|++...   
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~g-g~I~~~~~~~g~~~~~~~~---~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~  102 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERAT-GKILRVNPESGSVKTVFQV---PEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKN  102 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTT-CEEEEECTTTCCEEEEEEC---TTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEEC
T ss_pred             CCceEEEEcCCCcEEEEEcCC-CEEEEEECCCCcEeEEecC---CccccccCCCCceeEEEECCCcCcCCEEEEEEeccc
Confidence            456799999999977665433 2677676533322111111   000001113466889999995   444444332   


Q ss_pred             ----------CCeEEEEeCCCc-------ceEee-eecc-CCceeEEEEccCCCEEEEEeC
Q 015490          188 ----------NGNLRVFKWPSL-------EIILN-ESEA-HASVKDLSFSPDGKFLVSLGN  229 (406)
Q Consensus       188 ----------dg~i~vwd~~~~-------~~~~~-~~~~-~~~i~~~~~s~~~~~l~s~s~  229 (406)
                                ...|.-|+....       +.+.. +... ......|+|.|||.+.++.+.
T Consensus       103 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          103 PKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             TTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             cCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                      234555554321       11111 2111 124688999999997776553

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.26  E-value=0.092  Score=46.60  Aligned_cols=247  Identities=15%  Similarity=0.105  Sum_probs=122.5

Q ss_pred             CCceEEEEccCCC-eEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCC---CCEEEEe-eC-
Q 015490          114 DLPYRMAIHPHGD-GIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSE---GTIFAAG-SE-  187 (406)
Q Consensus       114 ~~v~~~~~sp~~~-~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~~-~~-  187 (406)
                      .....|+|.|+|+ .+++-..+  +|+.++.. +.....+.    ...............++|+|+   +..|+.. +. 
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G--~i~~~~~~-g~~~~~~~----~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~   90 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGG--ELRHWQAG-KGLSAPLS----GVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEV   90 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTT--EEEEEETT-TEECCCCB----SCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCc--eEEEEeCC-CceeeEec----CCcccccCCCCCceeEEECCCCCCCCEEEEEEeCC
Confidence            3568999999999 55544343  66666642 21111110    000001123356789999996   4444443 22 


Q ss_pred             ------CCeEEEEeCCCc--c--eEe----eeec---cCCceeEEEEccCCCEEEEEeCC-------------CCEEEEE
Q 015490          188 ------NGNLRVFKWPSL--E--IIL----NESE---AHASVKDLSFSPDGKFLVSLGNR-------------GPGRVWD  237 (406)
Q Consensus       188 ------dg~i~vwd~~~~--~--~~~----~~~~---~~~~i~~~~~s~~~~~l~s~s~d-------------~~i~iwd  237 (406)
                            ...|..|++...  .  ...    .+..   ....-..++|.|||.+.++.+..             +.|.-++
T Consensus        91 ~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~  170 (353)
T 2g8s_A           91 GDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLT  170 (353)
T ss_dssp             CSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEE
T ss_pred             CCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEEC
Confidence                  235666666432  1  111    1111   11124679999999655554432             3466666


Q ss_pred             cCCCe------------eeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCC-CcEEEEEeC--------CC-------
Q 015490          238 LASSA------------VATPLAKENDELFASCRFSPLNNEDYVLYIAAITDR-GASIVTWNT--------TT-------  289 (406)
Q Consensus       238 ~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~i~~~d~--------~~-------  289 (406)
                      ....-            ....+.... .....++|+|....   +|+.-.+.. ...|.+...        ..       
T Consensus       171 ~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~---l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~  246 (353)
T 2g8s_A          171 DQGEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNA---LWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSG  246 (353)
T ss_dssp             TTSCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTE---EEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTS
T ss_pred             CCCCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCC---EEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCC
Confidence            54210            111111112 23568999994332   444333211 112322110        00       


Q ss_pred             --------------ceEEEEeeecCCCeEEEEEcC-------CCCEEEEEeCCCcEEEEECCCceEEEE--eecccccce
Q 015490          290 --------------WKRIRTKQVVREPVSSFNVSA-------DGKLLAVGTASGDISIIDSSSLQVRTA--VKKAHLGIV  346 (406)
Q Consensus       290 --------------~~~~~~~~~~~~~i~~~~~sp-------~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~v  346 (406)
                                    ..++..+..+ .....+.|..       +|+++++....+.|...++..++....  +.......+
T Consensus       247 ~~~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp  325 (353)
T 2g8s_A          247 FKIPEAKGEIVAGTEQPVFYWKDS-PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRI  325 (353)
T ss_dssp             SCCTTCCBSSCTTSCCCSEEESSC-CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCE
T ss_pred             CccCcccCCCCCCccCCeEEeCCC-cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCce
Confidence                          0111122222 3467778764       466766666678888888876554332  211223478


Q ss_pred             EEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490          347 TALAFSYDSRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       347 ~~~~~sp~~~~l~s~s~dg~i~iw~~~  373 (406)
                      ..+++.|||.++++.. +..=+||.+.
T Consensus       326 ~~v~~~pdG~lyv~td-~~~g~I~ri~  351 (353)
T 2g8s_A          326 RDVRTGPDGYLYVLTD-ESSGELLKVS  351 (353)
T ss_dssp             EEEEECTTSCEEEEEC-STTEEEEEEE
T ss_pred             eEEEECCCCcEEEEEe-CCCCEEEEEe
Confidence            9999999998666432 2233566653

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.25  E-value=0.091  Score=46.27  Aligned_cols=241  Identities=11%  Similarity=0.143  Sum_probs=119.4

Q ss_pred             EecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCC---CCEEEEe
Q 015490          109 LRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSE---GTIFAAG  185 (406)
Q Consensus       109 ~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~~  185 (406)
                      +...-.....|+|.|+|+.+++-. ...+|+.++...+.. ..+..    ..............++++|+   +..|+..
T Consensus        27 va~gL~~P~~ia~~pdG~llVter-~~G~I~~v~~~~g~~-~~v~~----~~~v~~~g~~GllGia~~Pdf~~~g~lYv~  100 (347)
T 3das_A           27 VATGLNSPWGLAPLPGGDLLVSSR-DEATITRVDAKTGRK-TELGE----VPGVSPSGEGGLLGIALSPDYASDHMVYAY  100 (347)
T ss_dssp             EECCCSSEEEEEECTTSCEEEEET-TTCEEEEECTTTCCE-EEEEE----CTTCCCBTTBSEEEEEECTTHHHHCEEEEE
T ss_pred             eecCCCCceEEEEcCCCcEEEEEe-cCCEEEEEECCCCcE-eeecc----cCceeecCCCCceeeEeccccccCCEEEEE
Confidence            333445678999999998666553 244677676443321 11100    00001224467889999995   3344332


Q ss_pred             ---eCCCeEEEEeCCCc----------ceEe-eeec-cCCceeEEEEccCCCEEEEEeC-------------CCCEEEEE
Q 015490          186 ---SENGNLRVFKWPSL----------EIIL-NESE-AHASVKDLSFSPDGKFLVSLGN-------------RGPGRVWD  237 (406)
Q Consensus       186 ---~~dg~i~vwd~~~~----------~~~~-~~~~-~~~~i~~~~~s~~~~~l~s~s~-------------d~~i~iwd  237 (406)
                         ..++.|.-|.+..+          +.+. .+.. ....-..|.|.|||.+.++.+.             .|.|.-.+
T Consensus       101 yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~  180 (347)
T 3das_A          101 FTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMT  180 (347)
T ss_dssp             EECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEEC
T ss_pred             EecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEe
Confidence               23456666665441          1111 1211 1113467999999987776543             24444444


Q ss_pred             cCCCe-------eeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCC--cEEEEEeC--------CCc--------eE
Q 015490          238 LASSA-------VATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRG--ASIVTWNT--------TTW--------KR  292 (406)
Q Consensus       238 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~i~~~d~--------~~~--------~~  292 (406)
                      ....-       ....+...+.. ...++|+|++.    +++.-. +.+  ..|.....        ..+        .+
T Consensus       181 ~dG~ip~~nPf~~~~i~a~G~RN-p~Gla~dp~G~----L~~~d~-g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P  254 (347)
T 3das_A          181 PDGEPAPGNPFPGSPVYSYGHRN-VQGLAWDDKQR----LFASEF-GQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDP  254 (347)
T ss_dssp             TTSSBCTTCSSTTCCEEEBCCSB-CCEEEECTTCC----EEEEEC-CSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCC
T ss_pred             CCCCccCCCCCCCCeEEeeCCCC-cceEEECCCCC----EEEEec-CCCCCceeeEEcCCCEecCCcccCCCCCccccCC
Confidence            43210       00111112222 34688998765    333322 222  22332211        011        01


Q ss_pred             EEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEE---EEeecccccceEEEEEcCCCCeEEEEE
Q 015490          293 IRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVR---TAVKKAHLGIVTALAFSYDSRALVSAS  362 (406)
Q Consensus       293 ~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~v~~~~~sp~~~~l~s~s  362 (406)
                      +..+..+......++|. +|..+...-..+.|....+......   ..+..+..+.+..++..|||.++++..
T Consensus       255 ~~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          255 VAQWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             SEEECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             cEecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            12222111245667776 3555555555666766676554321   122223446789999999998766644

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.24  E-value=0.11  Score=53.83  Aligned_cols=240  Identities=10%  Similarity=0.088  Sum_probs=137.2

Q ss_pred             EEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCC
Q 015490          118 RMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWP  197 (406)
Q Consensus       118 ~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~  197 (406)
                      +.-.+|..+.++.=.+.+++|++++..              ..+..+.....|.-=.|-.+. .|+..+ +..|.-|++.
T Consensus        70 sAIMnP~~~iiALrag~~lQiFnl~~k--------------~klks~~~~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~  133 (1630)
T 1xi4_A           70 SAIMNPASKVIALKAGKTLQIFNIEMK--------------SKMKAHTMTDDVTFWKWISLN-TVALVT-DNAVYHWSME  133 (1630)
T ss_pred             hhccCCCcceEEEecCCeEEEeehHHh--------------hhhcccccCCCceEEEecCCC-eeEEEc-CCeEEEeccC
Confidence            345678777776666888899887743              223333344455555665443 343333 4579999996


Q ss_pred             CcceE-eeeecc----CCceeEEEEccCCCEEEEEe-------CCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCC
Q 015490          198 SLEII-LNESEA----HASVKDLSFSPDGKFLVSLG-------NRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNN  265 (406)
Q Consensus       198 ~~~~~-~~~~~~----~~~i~~~~~s~~~~~l~s~s-------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (406)
                      ..... ..+..|    ...|..-.-+++.++++..+       -.|.+.+|..+.+. .+.+.+|.. ....+.......
T Consensus       134 ~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~-~F~~~~~~~~~~  211 (1630)
T 1xi4_A          134 GESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAA-SFAQFKMEGNAE  211 (1630)
T ss_pred             CCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHh-hhheeccCCCCC
Confidence            43322 222222    12666777788888877554       24778888886432 233333321 111121111111


Q ss_pred             CceEEEEEEEc-CCCcEEEEEeCCCc---eE------EEEeeec---CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCc
Q 015490          266 EDYVLYIAAIT-DRGASIVTWNTTTW---KR------IRTKQVV---REPVSSFNVSADGKLLAVGTASGDISIIDSSSL  332 (406)
Q Consensus       266 ~~~~l~~~~~~-~~~~~i~~~d~~~~---~~------~~~~~~~---~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~  332 (406)
                       ...+++.+.. ...+.+++.++...   ..      +..+...   ..-..++..|+.-..+..-+.-|.+.+||+.++
T Consensus       212 -~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~  290 (1630)
T 1xi4_A          212 -ESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG  290 (1630)
T ss_pred             -CceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccc
Confidence             1123333322 23468888887542   11      1111111   122346778888788888899999999999999


Q ss_pred             eEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490          333 QVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       333 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      ..+..-. -...+|...+-.....-++.....|.|.--.+.....
T Consensus       291 ~~i~~~r-is~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~i  334 (1630)
T 1xi4_A          291 TCIYMNR-ISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI  334 (1630)
T ss_pred             hhhhhcc-ccCCceEEeccCCCCCceEEEcCCceEEEEEEccchh
Confidence            8876653 4445555444444434455566888888877777655

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.21  E-value=0.082  Score=46.95  Aligned_cols=198  Identities=14%  Similarity=0.125  Sum_probs=106.9

Q ss_pred             CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-eEeeee---ccCCceeEEEEccC---CCEEEEEeC----C----CC
Q 015490          168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLE-IILNES---EAHASVKDLSFSPD---GKFLVSLGN----R----GP  232 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~-~~~~~~---~~~~~i~~~~~s~~---~~~l~s~s~----d----~~  232 (406)
                      .....++|.|+|+++++ ..+|.|++++ .+++ .+..+.   ........|+++|+   +..|+++..    +    +.
T Consensus        29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             SCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            45678999999985554 5669999997 4444 222111   12236889999997   555554432    2    56


Q ss_pred             EEEEEcCCC-------eee-eecccCCcceEEEEEEEcCCCCceEEEEEEEcC------------CCcEEEEEeCCCc--
Q 015490          233 GRVWDLASS-------AVA-TPLAKENDELFASCRFSPLNNEDYVLYIAAITD------------RGASIVTWNTTTW--  290 (406)
Q Consensus       233 i~iwd~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~i~~~d~~~~--  290 (406)
                      |..|+....       +.+ ..+..........++|.|++.    ||+. .++            ..+.|.-++....  
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~----Lyvt-~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p  181 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM----LYIT-TGDAADPRLAQDLSSLAGKILRVDEEGRPP  181 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC----EEEE-CCCTTCGGGGTCTTCCSSEEEEECTTSCCC
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc----EEEE-ECCCCCCccccCCCCCCeEEEEEcCCCCCC
Confidence            777776543       111 112211111234689999986    3333 222            1356777766532  


Q ss_pred             -------eEEEEeeecCCCeEEEEEcC-CCCEEEEEeCCC---cEEEEECCC--------c--------eEEEEeecccc
Q 015490          291 -------KRIRTKQVVREPVSSFNVSA-DGKLLAVGTASG---DISIIDSSS--------L--------QVRTAVKKAHL  343 (406)
Q Consensus       291 -------~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg---~i~i~d~~~--------~--------~~~~~~~~~~~  343 (406)
                             ..+. ..++. ....++|+| +|+++++-...+   .|.+.....        +        .++..+. ...
T Consensus       182 ~~npf~~~~i~-a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~~  258 (354)
T 3a9g_A          182 ADNPFPNSPIW-SYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTG-SET  258 (354)
T ss_dssp             TTSSSTTCCEE-EECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-TCC
T ss_pred             CCCCCCCCcEE-EEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecC-CCC
Confidence                   1111 12232 346899999 666555433222   243332111        0        1112221 112


Q ss_pred             cceEEEEEc-------CCCCeEEEEECCCcEEEEEecCC
Q 015490          344 GIVTALAFS-------YDSRALVSASMDSSVRVTVIEDK  375 (406)
Q Consensus       344 ~~v~~~~~s-------p~~~~l~s~s~dg~i~iw~~~~~  375 (406)
                      .....++|.       .+|.++++.-..+.|...+++..
T Consensus       259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~  297 (354)
T 3a9g_A          259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDN  297 (354)
T ss_dssp             CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGG
T ss_pred             cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCC
Confidence            356788883       56777766666678888888753

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.20  E-value=0.074  Score=45.89  Aligned_cols=147  Identities=15%  Similarity=0.174  Sum_probs=73.2

Q ss_pred             CCCEEEEeeCCC-----eEEEEeCCCcceEeeeeccCC-ceeEEEEccCCCEEEEEeC-------CCCEEEEEcCCCeee
Q 015490          178 EGTIFAAGSENG-----NLRVFKWPSLEIILNESEAHA-SVKDLSFSPDGKFLVSLGN-------RGPGRVWDLASSAVA  244 (406)
Q Consensus       178 ~g~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~s~s~-------d~~i~iwd~~~~~~~  244 (406)
                      ++++++.|+.++     .+.+||+.+.+-...-..... .-.+++. -+++.++.|+.       -..+.+||+.+.+-.
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~  186 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWT  186 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence            567777777553     588899877654322111111 1112222 25666666654       235889999876543


Q ss_pred             eecccCCcceEEEEEEEcCCCCceEEEEEEEcCC-----CcEEEEEeCCCceEEEE--eeecCCCeEEEEEcCCCCEEEE
Q 015490          245 TPLAKENDELFASCRFSPLNNEDYVLYIAAITDR-----GASIVTWNTTTWKRIRT--KQVVREPVSSFNVSADGKLLAV  317 (406)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~i~~~d~~~~~~~~~--~~~~~~~i~~~~~sp~~~~l~~  317 (406)
                      ..-.......-.++... ++.    +++  .++.     ...+.+||+.+.+-...  +.........+.  -+++.++.
T Consensus       187 ~~~~~p~~r~~~~~~~~-~~~----iyv--~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~i~v~  257 (302)
T 2xn4_A          187 YIAEMSTRRSGAGVGVL-NNL----LYA--VGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA--VNGLLYVV  257 (302)
T ss_dssp             EECCCSSCCBSCEEEEE-TTE----EEE--ECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEE
T ss_pred             ECCCCccccccccEEEE-CCE----EEE--ECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE--ECCEEEEE
Confidence            32111111111122222 222    333  3332     24688999887543222  111111112222  25677777


Q ss_pred             EeCCC-----cEEEEECCCceE
Q 015490          318 GTASG-----DISIIDSSSLQV  334 (406)
Q Consensus       318 ~~~dg-----~i~i~d~~~~~~  334 (406)
                      |+.++     .+.+||+.+.+-
T Consensus       258 GG~~~~~~~~~v~~yd~~~~~W  279 (302)
T 2xn4_A          258 GGDDGSCNLASVEYYNPTTDKW  279 (302)
T ss_dssp             CCBCSSSBCCCEEEEETTTTEE
T ss_pred             CCcCCCcccccEEEEcCCCCeE
Confidence            77643     489999887653

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.16  E-value=0.07  Score=46.16  Aligned_cols=146  Identities=11%  Similarity=0.088  Sum_probs=74.1

Q ss_pred             CCCEEEEeeCC------CeEEEEeCCCcceEeeeeccCC-ceeEEEEccCCCEEEEEeC---------CCCEEEEEcCCC
Q 015490          178 EGTIFAAGSEN------GNLRVFKWPSLEIILNESEAHA-SVKDLSFSPDGKFLVSLGN---------RGPGRVWDLASS  241 (406)
Q Consensus       178 ~g~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~s~s~---------d~~i~iwd~~~~  241 (406)
                      ++++++.|+.+      ..+.+||..+.+-...-..... .-.+++. -+++.++.|+.         -..+.+||+.+.
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~  179 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATE  179 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence            66777887765      4689999887654322111111 1112222 25666666653         345889999887


Q ss_pred             eeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCC-----CcEEEEEeCCCceEEE--EeeecCCCeEEEEEcCCCCE
Q 015490          242 AVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDR-----GASIVTWNTTTWKRIR--TKQVVREPVSSFNVSADGKL  314 (406)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~i~~~d~~~~~~~~--~~~~~~~~i~~~~~sp~~~~  314 (406)
                      +-...-.......-.++... +++    +++  .++.     -..+.+||+.+.+-..  .+........++.+  +++.
T Consensus       180 ~W~~~~~~p~~r~~~~~~~~-~~~----i~v--~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i  250 (306)
T 3ii7_A          180 TWTELCPMIEARKNHGLVFV-KDK----IFA--VGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIV  250 (306)
T ss_dssp             EEEEECCCSSCCBSCEEEEE-TTE----EEE--ECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEE
T ss_pred             eEEECCCccchhhcceEEEE-CCE----EEE--EeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEE
Confidence            54332111111111122222 222    232  2222     2468899987754322  11111122233333  5777


Q ss_pred             EEEEeCC-----CcEEEEECCCce
Q 015490          315 LAVGTAS-----GDISIIDSSSLQ  333 (406)
Q Consensus       315 l~~~~~d-----g~i~i~d~~~~~  333 (406)
                      ++.|+.+     ..+.+||..+.+
T Consensus       251 ~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          251 YVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             EEEECBCSSSBCCEEEEEETTTTE
T ss_pred             EEEeCcCCCeeeeeEEEEcCCCCe
Confidence            7788754     468899988754

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.16  E-value=0.037  Score=49.70  Aligned_cols=149  Identities=18%  Similarity=0.201  Sum_probs=90.0

Q ss_pred             EEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeeccc--ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCC
Q 015490          120 AIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE--NVGQQLALTFDSEGTIFAAGSENGNLRVFKWP  197 (406)
Q Consensus       120 ~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~  197 (406)
                      ..+.+|..++++.++.+|.-.+...  .         ..+.+..-.  ....+..+..||+|++||..+. ..|.|..+.
T Consensus        27 ~~~~n~t~i~~a~~n~iR~~~i~~~--~---------~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP   94 (452)
T 3pbp_A           27 FSSQNGTRIVFIQDNIIRWYNVLTD--S---------LYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVP   94 (452)
T ss_dssp             EEETTTTEEEEEETTEEEEEETTTC--S---------SCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECC
T ss_pred             EEEcCCCEEEEEECCEEEEEECCCC--C---------cceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEec
Confidence            3445666677666666665443321  1         111121111  1235677999999999998765 589998886


Q ss_pred             Ccc------------eEeeeec------cCCceeEEEEccC---CCEEEEEeCCCCEEEEEcCCCe--eeeecccC----
Q 015490          198 SLE------------IILNESE------AHASVKDLSFSPD---GKFLVSLGNRGPGRVWDLASSA--VATPLAKE----  250 (406)
Q Consensus       198 ~~~------------~~~~~~~------~~~~i~~~~~s~~---~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~~----  250 (406)
                      .+.            ....+.-      ...+|..+.|||-   +..|++-..|+.|++||+....  +. .+...    
T Consensus        95 ~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~f  173 (452)
T 3pbp_A           95 WGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSF  173 (452)
T ss_dssp             TTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEE
T ss_pred             CccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhcccccc
Confidence            322            0111111      1347999999994   5689999999999999997522  11 22111    


Q ss_pred             ----CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEE
Q 015490          251 ----NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTW  285 (406)
Q Consensus       251 ----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~  285 (406)
                          ....+.+++|.+++-.   +|+ ++...+|.|+-.
T Consensus       174 g~d~~~~ev~S~~Fg~~~lT---LYv-l~~t~~GDIYAl  208 (452)
T 3pbp_A          174 GLDARVNDITDLEFSKDGLT---LYC-LNTTEGGDIFAF  208 (452)
T ss_dssp             ESCSSCCCEEEEEECTTSSC---EEE-EECTTSCEEEEE
T ss_pred             CCCcccceEEEEEEcCCCcE---EEE-EecCCCCCEEEE
Confidence                1134778999996543   443 344567777654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.11  E-value=0.02  Score=51.41  Aligned_cols=119  Identities=14%  Similarity=0.103  Sum_probs=75.9

Q ss_pred             CceEEEEccCCCeEEEEecCCeEEEEEecccccce-----eecceeccceeeeccc--ccCcEEEEEECCCC---CEEEE
Q 015490          115 LPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEI-----RRLGVKISEKVLSQLE--NVGQQLALTFDSEG---TIFAA  184 (406)
Q Consensus       115 ~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~g---~~l~~  184 (406)
                      .|..+..+|+|++|+..++.++.|..+........     ..+..  ..-.+....  ...+|..+.|+|-+   ..|++
T Consensus        67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~--~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVV  144 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQI--FHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVV  144 (452)
T ss_dssp             TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEE--EEEEGGGCC--CCCCEEEEEECTTBGGGCEEEE
T ss_pred             ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccce--eEEEcCCcccCCCCceeEEEeccccCCCCeEEE
Confidence            67889999999999999999888877762211000     00000  000011111  24779999999954   67888


Q ss_pred             eeCCCeEEEEeCCCcc-eEeeee------c---cCCceeEEEEccCCCEEEEEe--CCCCEEE
Q 015490          185 GSENGNLRVFKWPSLE-IILNES------E---AHASVKDLSFSPDGKFLVSLG--NRGPGRV  235 (406)
Q Consensus       185 ~~~dg~i~vwd~~~~~-~~~~~~------~---~~~~i~~~~~s~~~~~l~s~s--~d~~i~i  235 (406)
                      -..|+.|++||+.... ....+.      +   ....|.+++|..++-.|...+  +.|.|+-
T Consensus       145 LtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          145 LKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             EETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred             EecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence            8999999999997521 111111      1   113688999999877676655  6776653

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.09  E-value=0.056  Score=47.64  Aligned_cols=170  Identities=16%  Similarity=0.097  Sum_probs=96.2

Q ss_pred             eeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeee--eecc---cCCcceEEEEEEEcCCCCceEEEEEEEcCCC
Q 015490          205 ESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVA--TPLA---KENDELFASCRFSPLNNEDYVLYIAAITDRG  279 (406)
Q Consensus       205 ~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  279 (406)
                      +...-...+.|+|.|||+++++--..|.|++++..+++..  ..+.   .........++++|+-..+..+|+..+...+
T Consensus        27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~  106 (347)
T 3das_A           27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD  106 (347)
T ss_dssp             EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred             eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence            3333446789999999987666555899999987655432  2121   1223456789999963222246665554556


Q ss_pred             cEEEEEeCCC----------ceEEE-Eeee-cCCCeEEEEEcCCCCEEEEEeC-------------CCcEEEEECCCce-
Q 015490          280 ASIVTWNTTT----------WKRIR-TKQV-VREPVSSFNVSADGKLLAVGTA-------------SGDISIIDSSSLQ-  333 (406)
Q Consensus       280 ~~i~~~d~~~----------~~~~~-~~~~-~~~~i~~~~~sp~~~~l~~~~~-------------dg~i~i~d~~~~~-  333 (406)
                      ..|.-|....          .+.+. .+.. ..+....+.|.|||.+.++.+.             .|.|.-++....- 
T Consensus       107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip  186 (347)
T 3das_A          107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA  186 (347)
T ss_dssp             EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred             CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence            6777776543          11121 2211 1233467999999986666432             3556656654220 


Q ss_pred             ------EEEEeecccccceEEEEEcCCCCeEEEE-ECCCcEEEEEecCC
Q 015490          334 ------VRTAVKKAHLGIVTALAFSYDSRALVSA-SMDSSVRVTVIEDK  375 (406)
Q Consensus       334 ------~~~~~~~~~~~~v~~~~~sp~~~~l~s~-s~dg~i~iw~~~~~  375 (406)
                            ....+..+|. ....++|+|+|.++++- +.|+.=.|-.+..+
T Consensus       187 ~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G  234 (347)
T 3das_A          187 PGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPG  234 (347)
T ss_dssp             TTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTT
T ss_pred             CCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCC
Confidence                  0112222554 35689999998766543 23443445445444

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.07  E-value=0.041  Score=47.51  Aligned_cols=190  Identities=14%  Similarity=0.075  Sum_probs=93.1

Q ss_pred             CCCEEEEeeCC-----CeEEEEeCCCcceEeeeeccCCc-eeEEEEccCCCEEEEEeCCC-----CEEEEEcCCCeeeee
Q 015490          178 EGTIFAAGSEN-----GNLRVFKWPSLEIILNESEAHAS-VKDLSFSPDGKFLVSLGNRG-----PGRVWDLASSAVATP  246 (406)
Q Consensus       178 ~g~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~-i~~~~~s~~~~~l~s~s~d~-----~i~iwd~~~~~~~~~  246 (406)
                      ++.+++.|+.+     ..+.+||..+.+-...-...... -.+++. -+++.++.|+.++     .+.+||+.+.+-...
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~  139 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV  139 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeec
Confidence            56677777654     35889998776533221111111 112222 2567777776543     477889887654332


Q ss_pred             cccCCcceEEEEEEEcCCCCceEEEEEEEcCC-----CcEEEEEeCCCceEEEE--eeecCCCeEEEEEcCCCCEEEEEe
Q 015490          247 LAKENDELFASCRFSPLNNEDYVLYIAAITDR-----GASIVTWNTTTWKRIRT--KQVVREPVSSFNVSADGKLLAVGT  319 (406)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~i~~~d~~~~~~~~~--~~~~~~~i~~~~~sp~~~~l~~~~  319 (406)
                      -.......-.+++.. ++.    +|++.....     ...+..||+.+.+-...  +.........+.+  +++.++.|+
T Consensus       140 ~~~p~~r~~~~~~~~-~~~----iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG  212 (302)
T 2xn4_A          140 APMNTRRSSVGVGVV-GGL----LYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGG  212 (302)
T ss_dssp             CCCSSCCBSCEEEEE-TTE----EEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECC
T ss_pred             CCCCCcccCceEEEE-CCE----EEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECC
Confidence            111111111122222 222    333221111     24588999877543222  2111112222222  567777776


Q ss_pred             CC-----CcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCC-----cEEEEEecCCc
Q 015490          320 AS-----GDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDS-----SVRVTVIEDKK  376 (406)
Q Consensus       320 ~d-----g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg-----~i~iw~~~~~~  376 (406)
                      .+     ..+.+||..+.+-...-.......-.+++. -+++.++.|+.++     .+.+||+.+.+
T Consensus       213 ~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          213 HDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA-VNGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             BSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE-ECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence            54     368999998765433211011111112222 2677777777653     48888887653

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.03  E-value=0.06  Score=46.41  Aligned_cols=189  Identities=14%  Similarity=0.117  Sum_probs=92.7

Q ss_pred             CCCEEEEee-CC-----CeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCC-----CCEEEEEcCCCe---e
Q 015490          178 EGTIFAAGS-EN-----GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNR-----GPGRVWDLASSA---V  243 (406)
Q Consensus       178 ~g~~l~~~~-~d-----g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d-----~~i~iwd~~~~~---~  243 (406)
                      ++.+++.|+ .+     ..+.+||..+.+-...-..............+++.++.|+.+     ..+.+||..+.+   -
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W   93 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVW   93 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCee
Confidence            455666666 32     368899987765432211111111111222356677777654     468999988765   2


Q ss_pred             ee--ecccCCcceEEEEEEEcCCCCceEEEEEEEcCC---CcEEEEEeCCCceE--EEEeeecCCCeEEEEEcCCCCEEE
Q 015490          244 AT--PLAKENDELFASCRFSPLNNEDYVLYIAAITDR---GASIVTWNTTTWKR--IRTKQVVREPVSSFNVSADGKLLA  316 (406)
Q Consensus       244 ~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~i~~~d~~~~~~--~~~~~~~~~~i~~~~~sp~~~~l~  316 (406)
                      ..  .+...... . ++... ++.    +|++.....   ...+.+||+.+.+-  +..+......-..+.+  +++.++
T Consensus        94 ~~~~~~p~~r~~-~-~~~~~-~~~----lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv  164 (301)
T 2vpj_A           94 YSVAPMNVRRGL-A-GATTL-GDM----IYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYC  164 (301)
T ss_dssp             EEECCCSSCCBS-C-EEEEE-TTE----EEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEE
T ss_pred             EECCCCCCCccc-e-eEEEE-CCE----EEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEE
Confidence            22  22211111 1 12222 332    333221111   24688999876543  2222211112222222  577777


Q ss_pred             EEeCC-----CcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECC-----CcEEEEEecCCc
Q 015490          317 VGTAS-----GDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMD-----SSVRVTVIEDKK  376 (406)
Q Consensus       317 ~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d-----g~i~iw~~~~~~  376 (406)
                      .|+.+     ..+.+||..+.+-...-.......-.++.. -+++.++.|+.+     ..+.+||+.+.+
T Consensus       165 ~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  233 (301)
T 2vpj_A          165 LGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDS  233 (301)
T ss_dssp             ECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             ECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence            77654     458999988765433211011111112222 256777777754     468888887653

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.02  E-value=0.11  Score=45.11  Aligned_cols=190  Identities=11%  Similarity=0.050  Sum_probs=91.5

Q ss_pred             ECCCCCEEEEeeC----C-------CeEEEEeCCCcceEeeeeccCCce-eEEEEccCCCEEEEEeCC--------CCEE
Q 015490          175 FDSEGTIFAAGSE----N-------GNLRVFKWPSLEIILNESEAHASV-KDLSFSPDGKFLVSLGNR--------GPGR  234 (406)
Q Consensus       175 ~s~~g~~l~~~~~----d-------g~i~vwd~~~~~~~~~~~~~~~~i-~~~~~s~~~~~l~s~s~d--------~~i~  234 (406)
                      ...++++++.|+.    +       ..+.+||..+.+-...-....... .+++.. +++.++.|+.+        ..+.
T Consensus        42 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~  120 (315)
T 4asc_A           42 VTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVM  120 (315)
T ss_dssp             ECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEE
T ss_pred             EEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEE
Confidence            3457788888873    1       137888987765432111111111 122222 56666666632        4588


Q ss_pred             EEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCC------CcEEEEEeCCCceEEEE--eeecCCCeEEE
Q 015490          235 VWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDR------GASIVTWNTTTWKRIRT--KQVVREPVSSF  306 (406)
Q Consensus       235 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~i~~~d~~~~~~~~~--~~~~~~~i~~~  306 (406)
                      +||..+.+-...-.......-.+++. -+++    +|+  .++.      -..+.+||..+.+-...  +......-.++
T Consensus       121 ~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~----iyv--~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~  193 (315)
T 4asc_A          121 CYDRLSFKWGESDPLPYVVYGHTVLS-HMDL----VYV--IGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGAT  193 (315)
T ss_dssp             EEETTTTEEEECCCCSSCCBSCEEEE-ETTE----EEE--ECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE
T ss_pred             EECCCCCcEeECCCCCCcccceeEEE-ECCE----EEE--EeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEE
Confidence            99998765333211111111111222 2332    333  2322      24688999887543221  11111112222


Q ss_pred             EEcCCCCEEEEEeCCC-----cEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCC--------------cE
Q 015490          307 NVSADGKLLAVGTASG-----DISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDS--------------SV  367 (406)
Q Consensus       307 ~~sp~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg--------------~i  367 (406)
                      .+  +++.++.|+.++     .+.+||+.+.+-...-.......-.+++. -+++.++.|+.++              .+
T Consensus       194 ~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~~v  270 (315)
T 4asc_A          194 VH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVS-LVGTLYAIGGFATLETESGELVPTELNDI  270 (315)
T ss_dssp             EE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             EE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEE-ECCEEEEECCccccCcCCccccccccCcE
Confidence            22  567777777644     58899998765433221011111112222 2567777777532              36


Q ss_pred             EEEEecCC
Q 015490          368 RVTVIEDK  375 (406)
Q Consensus       368 ~iw~~~~~  375 (406)
                      .+||+++.
T Consensus       271 ~~yd~~~~  278 (315)
T 4asc_A          271 WRYNEEEK  278 (315)
T ss_dssp             EEEETTTT
T ss_pred             EEecCCCC
Confidence            67777654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.02  E-value=0.056  Score=46.89  Aligned_cols=186  Identities=11%  Similarity=0.053  Sum_probs=92.2

Q ss_pred             CCCEEEEeeC----C-----CeEEEEeCCCcceEeee--eccCCceeEEEEccCCCEEEEEeCC-----CCEEEEEcCCC
Q 015490          178 EGTIFAAGSE----N-----GNLRVFKWPSLEIILNE--SEAHASVKDLSFSPDGKFLVSLGNR-----GPGRVWDLASS  241 (406)
Q Consensus       178 ~g~~l~~~~~----d-----g~i~vwd~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~s~s~d-----~~i~iwd~~~~  241 (406)
                      ++++++.|+.    +     ..+.+||..+.+-...-  .........+.+  +++.++.|+.+     ..+.+||..+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD  147 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence            6677777765    2     46889998776533221  111112122222  56666666543     46889999876


Q ss_pred             eeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCC-----CcEEEEEeCCCceEEEE--eeecCCCeEEEEEcCCCCE
Q 015490          242 AVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDR-----GASIVTWNTTTWKRIRT--KQVVREPVSSFNVSADGKL  314 (406)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~i~~~d~~~~~~~~~--~~~~~~~i~~~~~sp~~~~  314 (406)
                      +-...-.......-.++... ++.    +|++  ++.     ...+..||+.+.+-...  +.........+.+  +++.
T Consensus       148 ~W~~~~~~p~~r~~~~~~~~-~~~----iyv~--GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i  218 (308)
T 1zgk_A          148 EWHLVAPMLTRRIGVGVAVL-NRL----LYAV--GGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCI  218 (308)
T ss_dssp             EEEECCCCSSCCBSCEEEEE-TTE----EEEE--CCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEE
T ss_pred             eEeECCCCCccccceEEEEE-CCE----EEEE--eCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEE
Confidence            54332111111111122222 222    3332  222     24688899877543221  1111112222333  5677


Q ss_pred             EEEEeCC-----CcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECC-----CcEEEEEecCC
Q 015490          315 LAVGTAS-----GDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMD-----SSVRVTVIEDK  375 (406)
Q Consensus       315 l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d-----g~i~iw~~~~~  375 (406)
                      ++.|+.+     ..+.+||+.+.+-...-.......-.+++. -+++.++.|+.+     ..+.+||+.+.
T Consensus       219 yv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          219 YAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             EEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             EEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence            7777654     469999998765433211011111112222 256777777754     35778887764

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.97  E-value=0.026  Score=50.12  Aligned_cols=56  Identities=7%  Similarity=0.064  Sum_probs=28.8

Q ss_pred             cEEEEECCCce--EEEEeecccccceEEEEEcCCCCeEEEEECCC------cEEEEEecCCcCCCCc
Q 015490          323 DISIIDSSSLQ--VRTAVKKAHLGIVTALAFSYDSRALVSASMDS------SVRVTVIEDKKKSGGL  381 (406)
Q Consensus       323 ~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg------~i~iw~~~~~~~~~~~  381 (406)
                      .+.+||+.+.+  .+..+.. ....  ..+...+++.++.|+.++      .|.++++++++.+...
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~-~r~~--~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~  349 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQ-GRAY--GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN  349 (357)
T ss_dssp             CCEEEECC---CEEEEECSS-CCBS--SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred             eEEEEecCCCceeeCCCCCC-Cccc--ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence            57889987644  3333321 1111  112234678888888653      3666688887765443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.91  E-value=0.18  Score=43.65  Aligned_cols=146  Identities=12%  Similarity=0.063  Sum_probs=73.2

Q ss_pred             CCCEEEEeeCC-----CeEEEEeCCCcceEee--eeccCCceeEEEEccCCCEEEEEeCC-----CCEEEEEcCCCeeee
Q 015490          178 EGTIFAAGSEN-----GNLRVFKWPSLEIILN--ESEAHASVKDLSFSPDGKFLVSLGNR-----GPGRVWDLASSAVAT  245 (406)
Q Consensus       178 ~g~~l~~~~~d-----g~i~vwd~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~s~s~d-----~~i~iwd~~~~~~~~  245 (406)
                      ++++++.|+.+     ..+.+||..+.+-...  +......-..+.+  +++.++.|+.+     ..+.+||+.+.+-..
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  198 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRM  198 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEee
Confidence            66777777643     4688999877654322  1111111122222  56666666654     468899998765433


Q ss_pred             ecccCCcceEEEEEEEcCCCCceEEEEEEEcCC-----CcEEEEEeCCCceEEEE--eeecCCCeEEEEEcCCCCEEEEE
Q 015490          246 PLAKENDELFASCRFSPLNNEDYVLYIAAITDR-----GASIVTWNTTTWKRIRT--KQVVREPVSSFNVSADGKLLAVG  318 (406)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~i~~~d~~~~~~~~~--~~~~~~~i~~~~~sp~~~~l~~~  318 (406)
                      .-.......-.++... ++.    +++  .++.     ...+.+||+.+.+-...  +.........+.+  +++.++.|
T Consensus       199 ~~~~p~~r~~~~~~~~-~~~----iyv--~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~G  269 (308)
T 1zgk_A          199 ITAMNTIRSGAGVCVL-HNC----IYA--AGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLG  269 (308)
T ss_dssp             CCCCSSCCBSCEEEEE-TTE----EEE--ECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEC
T ss_pred             CCCCCCccccceEEEE-CCE----EEE--EeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEEEc
Confidence            2111111111122222 222    333  3332     25688999887543221  1111111222222  56777777


Q ss_pred             eCC-----CcEEEEECCCceE
Q 015490          319 TAS-----GDISIIDSSSLQV  334 (406)
Q Consensus       319 ~~d-----g~i~i~d~~~~~~  334 (406)
                      +.+     ..+.+||+.+.+-
T Consensus       270 G~~~~~~~~~v~~yd~~~~~W  290 (308)
T 1zgk_A          270 GYDGHTFLDSVECYDPDTDTW  290 (308)
T ss_dssp             CBCSSCBCCEEEEEETTTTEE
T ss_pred             CcCCCcccceEEEEcCCCCEE
Confidence            653     3578888876543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.80  E-value=0.15  Score=41.32  Aligned_cols=150  Identities=12%  Similarity=-0.001  Sum_probs=84.1

Q ss_pred             ceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeee------ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEE
Q 015490          211 SVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT------PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVT  284 (406)
Q Consensus       211 ~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~  284 (406)
                      .+.+++|+|+|.+.++  .+|.++-.+..+.....      .+-...-....++.|.|++.    ||.+    .|+.|+-
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~----LYav----~dG~iyr  111 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGY----LYAV----SKDKLYK  111 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSC----EEEE----ETTEEEE
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCC----EEEe----CCCEEEE
Confidence            7889999999986665  67776666654422211      11100111136788999986    2332    3588888


Q ss_pred             EeCCCceE-------EEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCce------EEEEeecccccceEEEEE
Q 015490          285 WNTTTWKR-------IRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQ------VRTAVKKAHLGIVTALAF  351 (406)
Q Consensus       285 ~d~~~~~~-------~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~v~~~~~  351 (406)
                      ++..+...       ...-...-..+..+.+.|+|.+.++.  |+.++-....+..      ....+-...-..-+.+.|
T Consensus       112 ~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f  189 (236)
T 1tl2_A          112 ASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFF  189 (236)
T ss_dssp             ESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEE
T ss_pred             eCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEE
Confidence            87643111       11111111457899999999877776  7775443333211      011111122223456779


Q ss_pred             cCCCCeEEEEECCCcEEEEEecCCc
Q 015490          352 SYDSRALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       352 sp~~~~l~s~s~dg~i~iw~~~~~~  376 (406)
                      .+++...+..  ++  ++|....++
T Consensus       190 ~~~G~l~~v~--~g--~~Y~~~~p~  210 (236)
T 1tl2_A          190 SSVGTLFGVQ--GG--KFYEDYPPS  210 (236)
T ss_dssp             CTTSCEEEEE--TT--EEEEESCCC
T ss_pred             CCCCcEEEEe--CC--eEEecCCcc
Confidence            9998866655  66  567665553

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.74  E-value=0.68  Score=47.97  Aligned_cols=245  Identities=11%  Similarity=0.037  Sum_probs=133.7

Q ss_pred             CCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCC----CCEEEEe--
Q 015490          113 SDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSE----GTIFAAG--  185 (406)
Q Consensus       113 ~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----g~~l~~~--  185 (406)
                      .....++++-.+| ++++|+ .++-.+|.++........      .-..+..+..-++|.+++....    ...++++  
T Consensus       326 ~~~~ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~~~~------~~~~~~~~~N~~PI~D~~v~d~~~~~~~~i~~~sG  398 (1158)
T 3ei3_A          326 TSIAECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNEQGS------YVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSG  398 (1158)
T ss_dssp             CSCCSEEEECSTT-EEEEECSSSCEEEEEECSSCCTTSC------CEEEEEEECCCCSEEEEEEECTTSSSCCEEEEEEC
T ss_pred             ccCccEEEEECCC-EEEEEEecCCcEEEEEecCCCCccc------eEEeEeeecCcCCceeEEEEccCCCCCCeEEEEEC
Confidence            3345777777666 566666 777789988764321100      1134556666788888877432    1344443  


Q ss_pred             -eCCCeEEEEeCCCcce-Eeeee-ccCCceeEEEEc---cCCCEEEEEeCCCCEEEEEcCCCeeeeecc--cC--CcceE
Q 015490          186 -SENGNLRVFKWPSLEI-ILNES-EAHASVKDLSFS---PDGKFLVSLGNRGPGRVWDLASSAVATPLA--KE--NDELF  255 (406)
Q Consensus       186 -~~dg~i~vwd~~~~~~-~~~~~-~~~~~i~~~~~s---~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--~~--~~~~~  255 (406)
                       +.+|.++++.-.-+-. ..... ..-..++.+...   ....+|+.+..+.+ .++.+... .+..+.  +-  ....+
T Consensus       399 ~g~~gsL~~lr~Gi~~~~~~~~~l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e-~veev~~~gf~~~~~TL  476 (1158)
T 3ei3_A          399 AFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNGE-EVEETELMGFVDDQQTF  476 (1158)
T ss_dssp             CGGGCEEEEEEESBCEEEEEEECCCSCCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEETT-EEEEECCTTCCSSSCEE
T ss_pred             cCCCCeEEEEecCCCEEEEEeecCCCccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeCC-cccccccccccCCCCcE
Confidence             3468888876321111 11111 112245555543   23457777666655 56665322 222221  10  11112


Q ss_pred             EEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC-CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceE
Q 015490          256 ASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR-EPVSSFNVSADGKLLAVGTASGDISIIDSSSLQV  334 (406)
Q Consensus       256 ~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~  334 (406)
                      .+.. ..++.    + +-++   ...|++.+......+..+.... ..|...+.+  +.+++.++ ++.+.++.+..++.
T Consensus       477 ~~~~-l~~~~----i-vQVt---~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L  544 (1158)
T 3ei3_A          477 FCGN-VAHQQ----L-IQIT---SASVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-GRALYYLQIHPQEL  544 (1158)
T ss_dssp             EEEE-ETTTE----E-EEEE---SSCEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEE
T ss_pred             EEEE-cCCCe----E-EEEe---cCEEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCce
Confidence            1111 12211    1 1121   4457778776655565655433 356666655  34666665 67888888776543


Q ss_pred             EEEeecccccceEEEEEcCC------CCeEEEEEC-CCcEEEEEecCCcCC
Q 015490          335 RTAVKKAHLGIVTALAFSYD------SRALVSASM-DSSVRVTVIEDKKKS  378 (406)
Q Consensus       335 ~~~~~~~~~~~v~~~~~sp~------~~~l~s~s~-dg~i~iw~~~~~~~~  378 (406)
                      .......-...|.|+++.|.      +++++.|.. |++|+|+++.+.+.+
T Consensus       545 ~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~  595 (1158)
T 3ei3_A          545 RQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELL  595 (1158)
T ss_dssp             EEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEE
T ss_pred             eeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeE
Confidence            32222234567999999863      468999997 999999999865543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.67  E-value=0.28  Score=42.52  Aligned_cols=224  Identities=13%  Similarity=0.050  Sum_probs=105.7

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEec-----C---C--eEEEEEecccccceeecceeccce
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQ-----N---S--CRLFEWDEVENTEIRRLGVKISEK  159 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~-----~---~--~~i~~~~~~~~~~~~~~~~~~~~~  159 (406)
                      .+..+|+..+.|..   ..+..............++..++.|+.     +   .  -.+|.++..+.+-... ..     
T Consensus        14 ~~~~yd~~~~~W~~---~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~-~~-----   84 (315)
T 4asc_A           14 GAVAYDPAANECYC---ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM-PP-----   84 (315)
T ss_dssp             EEEEEETTTTEEEE---EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC-CC-----
T ss_pred             ceEEECCCCCeEec---CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC-CC-----
Confidence            57788888877743   222222223333344456777777761     1   1  1267777654432111 10     


Q ss_pred             eeeccccc-CcEEEEEECCCCCEEEEeeCC--------CeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeC-
Q 015490          160 VLSQLENV-GQQLALTFDSEGTIFAAGSEN--------GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGN-  229 (406)
Q Consensus       160 ~~~~~~~~-~~v~~~~~s~~g~~l~~~~~d--------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~-  229 (406)
                          +... .....+.+  ++++++.|+.+        ..+.+||..+.+-...-..........+..-+++.++.|+. 
T Consensus        85 ----~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~  158 (315)
T 4asc_A           85 ----LPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKG  158 (315)
T ss_dssp             ----BSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBC
T ss_pred             ----CCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCC
Confidence                0011 11112222  66777777642        46899998876533221111111111112235666777765 


Q ss_pred             C-----CCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCC---cEEEEEeCCCceEEEEee--ec
Q 015490          230 R-----GPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRG---ASIVTWNTTTWKRIRTKQ--VV  299 (406)
Q Consensus       230 d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~i~~~d~~~~~~~~~~~--~~  299 (406)
                      +     ..+.+||..+.+-...-.......-.++... +++    ++++......   ..+.+||+.+.+-...-.  ..
T Consensus       159 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~----iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~  233 (315)
T 4asc_A          159 SDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH-DGR----IIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE  233 (315)
T ss_dssp             TTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTE----EEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC
T ss_pred             CCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE-CCE----EEEEeccCCCCccceEEEEECCCCeEEECCCCCCc
Confidence            2     4689999987654332111111111112222 332    3333322222   368889987754322211  11


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCC--------------CcEEEEECCCceEE
Q 015490          300 REPVSSFNVSADGKLLAVGTAS--------------GDISIIDSSSLQVR  335 (406)
Q Consensus       300 ~~~i~~~~~sp~~~~l~~~~~d--------------g~i~i~d~~~~~~~  335 (406)
                      ......+.+  +++.++.|+.+              ..+.+||+.+.+-.
T Consensus       234 r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~  281 (315)
T 4asc_A          234 RSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWE  281 (315)
T ss_dssp             CBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEE
T ss_pred             ccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCChhh
Confidence            112222322  56777777653              23778888765433

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.59  E-value=0.32  Score=42.22  Aligned_cols=192  Identities=10%  Similarity=0.035  Sum_probs=90.4

Q ss_pred             ECCCCCEEEEeeC----CC-------eEEEEeCCCcceEeeeeccCC-ceeEEEEccCCCEEEEEeCC-------CCEEE
Q 015490          175 FDSEGTIFAAGSE----NG-------NLRVFKWPSLEIILNESEAHA-SVKDLSFSPDGKFLVSLGNR-------GPGRV  235 (406)
Q Consensus       175 ~s~~g~~l~~~~~----dg-------~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~s~s~d-------~~i~i  235 (406)
                      ...++.+++.|+.    ++       .+.+||..+.+-...-..... .-.+++.. +++.++.|+.+       ..+.+
T Consensus        53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~  131 (318)
T 2woz_A           53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLC  131 (318)
T ss_dssp             ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEE
T ss_pred             EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE-CCEEEEEcCccCCCCcccceEEE
Confidence            3457778888873    11       277888877654322111111 11122222 56677777653       24788


Q ss_pred             EEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCC----CcEEEEEeCCCceEEEE--eeecCCCeEEEEEc
Q 015490          236 WDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDR----GASIVTWNTTTWKRIRT--KQVVREPVSSFNVS  309 (406)
Q Consensus       236 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~i~~~d~~~~~~~~~--~~~~~~~i~~~~~s  309 (406)
                      ||..+.+-...-.......-.+++. .++.    +|++.....    ...+.+||+.+.+-...  +.........+.+ 
T Consensus       132 yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~----iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-  205 (318)
T 2woz_A          132 YDPVAAKWSEVKNLPIKVYGHNVIS-HNGM----IYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-  205 (318)
T ss_dssp             EETTTTEEEEECCCSSCEESCEEEE-ETTE----EEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-
T ss_pred             EeCCCCCEeECCCCCCcccccEEEE-ECCE----EEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE-
Confidence            8988765433211111111111222 2332    333221111    24588999887543222  1111111122222 


Q ss_pred             CCCCEEEEEeCC-----CcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECC--------------CcEEEE
Q 015490          310 ADGKLLAVGTAS-----GDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMD--------------SSVRVT  370 (406)
Q Consensus       310 p~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d--------------g~i~iw  370 (406)
                       +++.++.|+.+     ..+.+||+.+.+-...-.......-.++. .-+++.++.|+.+              ..+.+|
T Consensus       206 -~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~y  283 (318)
T 2woz_A          206 -KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLV-SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKY  283 (318)
T ss_dssp             -TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEE-EETTEEEEECCBCCBC----CCBCCBCCCEEEE
T ss_pred             -CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEE-EECCEEEEECCeeccCCCCceeccceeeeEEEE
Confidence             56777777653     35788998775433221101111111222 2256777777654              357788


Q ss_pred             EecCC
Q 015490          371 VIEDK  375 (406)
Q Consensus       371 ~~~~~  375 (406)
                      |+.+.
T Consensus       284 d~~~~  288 (318)
T 2woz_A          284 EDDKK  288 (318)
T ss_dssp             ETTTT
T ss_pred             eCCCC
Confidence            87664

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=96.59  E-value=0.34  Score=45.08  Aligned_cols=91  Identities=19%  Similarity=0.069  Sum_probs=63.6

Q ss_pred             EEEEEeCCC----ce-EEEEeeecCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCc------eE-------EEEeecc
Q 015490          281 SIVTWNTTT----WK-RIRTKQVVREPVSSFNVSADGKLLAVGTA-SGDISIIDSSSL------QV-------RTAVKKA  341 (406)
Q Consensus       281 ~i~~~d~~~----~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~~~------~~-------~~~~~~~  341 (406)
                      .+.+.|.+.    +. .+..+... .....+..+|||+++++++. +.++.++|.+..      +.       .....  
T Consensus       299 gv~ViD~~~~~~~~~~~~~~iP~p-ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e--  375 (638)
T 3sbq_A          299 KTPVLDGRKKDGKDSKFTRYVPVP-KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE--  375 (638)
T ss_dssp             CCCEEECSCBTTBCCSSEEEEEES-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--
T ss_pred             CeeEEccccccccCCceEEEEeCC-CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--
Confidence            477888776    32 33333333 44578999999999998876 889999998742      11       22222  


Q ss_pred             cccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490          342 HLGIVTALAFSYDSRALVSASMDSSVRVTVIED  374 (406)
Q Consensus       342 ~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~  374 (406)
                      -.......+|.++|....|.-.|..|.-|++..
T Consensus       376 ~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~  408 (638)
T 3sbq_A          376 LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEE  408 (638)
T ss_dssp             CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred             CCCcccEEEECCCCceEeeeeecceEEEEeccH
Confidence            233467899999996556666899999999975

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.41  E-value=0.32  Score=44.78  Aligned_cols=98  Identities=15%  Similarity=0.213  Sum_probs=57.0

Q ss_pred             CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceE--eeeec------cCCceeEEEEccC---CCEEEEEeC-------
Q 015490          168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEII--LNESE------AHASVKDLSFSPD---GKFLVSLGN-------  229 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~--~~~~~------~~~~i~~~~~s~~---~~~l~s~s~-------  229 (406)
                      .....++|.|+|+++++-...+.|++++..+++..  ..+..      .......|+|+|+   +..|..+..       
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            45679999999997776544457888876555432  22211      2336779999995   555554432       


Q ss_pred             ------CCCEEEEEcCCC-------eeee-ecccCCcceEEEEEEEcCCC
Q 015490          230 ------RGPGRVWDLASS-------AVAT-PLAKENDELFASCRFSPLNN  265 (406)
Q Consensus       230 ------d~~i~iwd~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~  265 (406)
                            ...|.-|+...+       +.+. .+..........++|.|++.
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~  156 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK  156 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe
Confidence                  124555555321       1111 12222223467899999986

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.34  E-value=0.071  Score=46.76  Aligned_cols=107  Identities=10%  Similarity=0.035  Sum_probs=59.4

Q ss_pred             EEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEe-eCCCeEEEEeCCCcceEeeeeccCC-ceeE
Q 015490          137 RLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAG-SENGNLRVFKWPSLEIILNESEAHA-SVKD  214 (406)
Q Consensus       137 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~-~i~~  214 (406)
                      .||-++..+++....+........+ .......      ..++..++.. ..||.|..++..+|.....+....- ...-
T Consensus        21 ~l~Ald~~tG~~~W~~~~~~~~p~~-~~~~~~~------~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP   93 (339)
T 2be1_A           21 GLHAVDRRNGHIIWSIEPENFQPLI-EIQEPSR------LETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVSTSP   93 (339)
T ss_dssp             CEEEEETTTTEEEEEECGGGSCCSE-ECCCSCT------TTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTTCS
T ss_pred             eEEEEECCCCcEEEEecCCccCCcE-EecCCcc------ccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceeccc
Confidence            4566777777776665442001111 1111110      1233344343 5799999999888755443322111 1111


Q ss_pred             EEEc-----------cCCCEEEEEeCCCCEEEEEcCCCeeeeecccC
Q 015490          215 LSFS-----------PDGKFLVSLGNRGPGRVWDLASSAVATPLAKE  250 (406)
Q Consensus       215 ~~~s-----------~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  250 (406)
                      +...           ..+..+++++.++.+...|+++|+.+..+...
T Consensus        94 ~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           94 LHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             EEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred             cccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence            2211           13457889999999999999999998877643

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.28  E-value=0.054  Score=43.95  Aligned_cols=143  Identities=15%  Similarity=0.110  Sum_probs=78.0

Q ss_pred             CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceE-----eeeeccCC--ceeEEEEccCCCEEEEEeCCCCEEEEEcCC
Q 015490          168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEII-----LNESEAHA--SVKDLSFSPDGKFLVSLGNRGPGRVWDLAS  240 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~-----~~~~~~~~--~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~  240 (406)
                      ..+..++|+|+|.+.++  .+|.++-.+..+....     .+..+..+  ...++.|.|+|.+.++  .||.|+-++-.+
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            46679999999987777  6787776665442211     11111111  2478999999987776  568888777543


Q ss_pred             Ceeeee------cccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCce------EEEEee-ecCCCeEEEE
Q 015490          241 SAVATP------LAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK------RIRTKQ-VVREPVSSFN  307 (406)
Q Consensus       241 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~------~~~~~~-~~~~~i~~~~  307 (406)
                      .....-      +....-..+..+.+.|++.    |+  +..  ++.++-....+..      ....+- ..-....-+.
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~----Ly--av~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~  188 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGY----LY--AVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLF  188 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSC----EE--EEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEE
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCce----EE--EEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEE
Confidence            221111      1111113468899999997    23  332  5555433322111      001111 1112334566


Q ss_pred             EcCCCCEEEEEeCCCcE
Q 015490          308 VSADGKLLAVGTASGDI  324 (406)
Q Consensus       308 ~sp~~~~l~~~~~dg~i  324 (406)
                      |++++.+.++.  ++.+
T Consensus       189 f~~~G~l~~v~--~g~~  203 (236)
T 1tl2_A          189 FSSVGTLFGVQ--GGKF  203 (236)
T ss_dssp             ECTTSCEEEEE--TTEE
T ss_pred             ECCCCcEEEEe--CCeE
Confidence            88888777665  6643

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.27  E-value=0.5  Score=40.97  Aligned_cols=223  Identities=11%  Similarity=0.045  Sum_probs=103.4

Q ss_pred             EEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEec---CC-------eEEEEEecccccceeecceecccee
Q 015490           91 LSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQ---NS-------CRLFEWDEVENTEIRRLGVKISEKV  160 (406)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~---~~-------~~i~~~~~~~~~~~~~~~~~~~~~~  160 (406)
                      +..+|+..+.|..   ..+..............++..++.|+.   ..       ..+|.++..+.+-...-.       
T Consensus        26 ~~~yd~~~~~W~~---~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~-------   95 (318)
T 2woz_A           26 AVAYDPMENECYL---TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP-------   95 (318)
T ss_dssp             EEEEETTTTEEEE---EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC-------
T ss_pred             eEEECCCCCceec---ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC-------
Confidence            5778888877744   122221222233344556777777661   11       126777765433221100       


Q ss_pred             eeccccc-CcEEEEEECCCCCEEEEeeCC-------CeEEEEeCCCcceEeeeeccCCce-eEEEEccCCCEEEEEeC--
Q 015490          161 LSQLENV-GQQLALTFDSEGTIFAAGSEN-------GNLRVFKWPSLEIILNESEAHASV-KDLSFSPDGKFLVSLGN--  229 (406)
Q Consensus       161 ~~~~~~~-~~v~~~~~s~~g~~l~~~~~d-------g~i~vwd~~~~~~~~~~~~~~~~i-~~~~~s~~~~~l~s~s~--  229 (406)
                         +... .....+.+  ++++++.|+.+       ..+.+||..+.+-...-....... .+++. .+++.++.|+.  
T Consensus        96 ---~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~  169 (318)
T 2woz_A           96 ---LPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTD  169 (318)
T ss_dssp             ---BSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEES
T ss_pred             ---CCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCC
Confidence               1111 11112222  56777777754       358889987765432211111111 12222 35666666653  


Q ss_pred             ----CCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCC---cEEEEEeCCCceEEEE--eeecC
Q 015490          230 ----RGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRG---ASIVTWNTTTWKRIRT--KQVVR  300 (406)
Q Consensus       230 ----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~i~~~d~~~~~~~~~--~~~~~  300 (406)
                          -..+.+||+.+.+-...-.........+++.. ++.    ++++.....+   ..+.+||+.+.+-...  +....
T Consensus       170 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~----iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r  244 (318)
T 2woz_A          170 DKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-KGK----IVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQER  244 (318)
T ss_dssp             SSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTE----EEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCC
T ss_pred             CCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE-CCE----EEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcc
Confidence                23589999987754332111111111122222 222    3333322222   4577899876543221  11111


Q ss_pred             CCeEEEEEcCCCCEEEEEeCC--------------CcEEEEECCCceEEE
Q 015490          301 EPVSSFNVSADGKLLAVGTAS--------------GDISIIDSSSLQVRT  336 (406)
Q Consensus       301 ~~i~~~~~sp~~~~l~~~~~d--------------g~i~i~d~~~~~~~~  336 (406)
                      .....+.  -+++.++.|+.+              ..+.+||+.+.+-..
T Consensus       245 ~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~  292 (318)
T 2woz_A          245 SSISLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAG  292 (318)
T ss_dssp             BSCEEEE--ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEE
T ss_pred             cceEEEE--ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehh
Confidence            1112222  246677776643              357888887765433

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.23  E-value=0.5  Score=41.69  Aligned_cols=56  Identities=16%  Similarity=0.044  Sum_probs=30.0

Q ss_pred             EEEEEeCCCc--eEEEEeeecCCCeEEEEEcCCCCEEEEEeCCC------cEEEEECCCceEEEEe
Q 015490          281 SIVTWNTTTW--KRIRTKQVVREPVSSFNVSADGKLLAVGTASG------DISIIDSSSLQVRTAV  338 (406)
Q Consensus       281 ~i~~~d~~~~--~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg------~i~i~d~~~~~~~~~~  338 (406)
                      .+.+||+.+.  +.+..+......-.++  .-+++.++.|+.++      .|.++++++++.+...
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~  349 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQGRAYGVSL--PWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN  349 (357)
T ss_dssp             CCEEEECC---CEEEEECSSCCBSSEEE--EETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred             eEEEEecCCCceeeCCCCCCCcccceeE--EeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence            5778888754  3443333222222222  23677888887643      3666788877665544

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.19  E-value=0.22  Score=44.13  Aligned_cols=145  Identities=12%  Similarity=0.117  Sum_probs=78.9

Q ss_pred             ceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecc------cCCcceEEEEEEEcC---CCCceEEEEEEEcCC---
Q 015490          211 SVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLA------KENDELFASCRFSPL---NNEDYVLYIAAITDR---  278 (406)
Q Consensus       211 ~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~------~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~---  278 (406)
                      ....|+|.|+|+.|+++...|.|++++.. +.....+.      .........++++|+   +..   +|+..+...   
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~---lYv~~~~~~~~g   94 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRR---IWLSYSEVGDDG   94 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCE---EEEEEEEECSSS
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCE---EEEEEeCCCCCC
Confidence            56899999999834455667899999853 33221111      112234578999996   442   444433211   


Q ss_pred             --CcEEEEEeCCCc--e--EEEEe-ee------cCCCeEEEEEcCCCCEEEEEeC-------------CCcEEEEECCCc
Q 015490          279 --GASIVTWNTTTW--K--RIRTK-QV------VREPVSSFNVSADGKLLAVGTA-------------SGDISIIDSSSL  332 (406)
Q Consensus       279 --~~~i~~~d~~~~--~--~~~~~-~~------~~~~i~~~~~sp~~~~l~~~~~-------------dg~i~i~d~~~~  332 (406)
                        ...|..++....  +  ....+ ..      .......+.|.|||.+.++.+.             .|.|.-++....
T Consensus        95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~  174 (353)
T 2g8s_A           95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE  174 (353)
T ss_dssp             CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred             CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence              345666665432  1  11111 11      1122467999999965554332             246777776532


Q ss_pred             e------------EEEEeecccccceEEEEEcC-CCCeEEE
Q 015490          333 Q------------VRTAVKKAHLGIVTALAFSY-DSRALVS  360 (406)
Q Consensus       333 ~------------~~~~~~~~~~~~v~~~~~sp-~~~~l~s  360 (406)
                      -            ....+..+|. ....++|+| +|+++++
T Consensus       175 ~p~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          175 IPDDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             CCTTCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEE
T ss_pred             CCCCCCCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEE
Confidence            0            1112222343 367899999 5665554

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.18  E-value=0.021  Score=50.15  Aligned_cols=188  Identities=11%  Similarity=0.030  Sum_probs=100.5

Q ss_pred             CEEEEeeCCCeEEEEeCCCcceEeeeeccC-CceeEEEE--ccCCCEEEEE--eCCCCEEEEEcCCCeeeeecccCC---
Q 015490          180 TIFAAGSENGNLRVFKWPSLEIILNESEAH-ASVKDLSF--SPDGKFLVSL--GNRGPGRVWDLASSAVATPLAKEN---  251 (406)
Q Consensus       180 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~--s~~~~~l~s~--s~d~~i~iwd~~~~~~~~~~~~~~---  251 (406)
                      ..+++++.||.|.-+|..+|+....+.... .++....-  .+.+..++.+  +.||.+..++..+|.....+....   
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            467888999999999999999887776541 12211110  0112234433  589999999988875543332110   


Q ss_pred             cceEEE---EEE------EcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC--CC-----eEEEEEc-----C
Q 015490          252 DELFAS---CRF------SPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR--EP-----VSSFNVS-----A  310 (406)
Q Consensus       252 ~~~~~~---~~~------~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~-----i~~~~~s-----p  310 (406)
                      ..++..   ...      +.++       .+..++.++.+...|+++|+.+..+....  ..     ..|....     .
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g-------~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~  163 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDE-------KVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQE  163 (339)
T ss_dssp             TCSEEEECC----------CCE-------EEEECEEEEEEEEEETTTCCEEEEESTTCBCC-------------------
T ss_pred             ccccccCCCceeecccccccCC-------EEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccccccccc
Confidence            111110   000      0111       34566789999999999999998886432  10     0111111     1


Q ss_pred             CCCEEEEEeCCCcEEEEECCCceEEEEee----cccc--cceE-EEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490          311 DGKLLAVGTASGDISIIDSSSLQVRTAVK----KAHL--GIVT-ALAFSYDSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       311 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~--~~v~-~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      .+..|+.+..+..+.+.+ ++++ +-.+.    ..+.  ..+. +-..+.|+.+ +.++.||.|.-.|..+++.
T Consensus       164 ~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~  234 (339)
T 2be1_A          164 CENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIA  234 (339)
T ss_dssp             -CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCE
T ss_pred             CCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcE
Confidence            245677777777777766 4443 21111    0000  0000 0001234665 4467888888888777765

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.17  E-value=1.1  Score=44.14  Aligned_cols=232  Identities=12%  Similarity=0.053  Sum_probs=129.3

Q ss_pred             CCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEE
Q 015490          113 SDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLR  192 (406)
Q Consensus       113 ~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~  192 (406)
                      ...|.+|.-..+|..- .|....+  ..+|....   ..+..  .     .......|.++.-..+|. |..|+.+| +.
T Consensus        21 ~n~V~~I~qD~~G~lW-igT~~GL--~ryDG~~~---~~~~~--~-----~~~~~~~i~~i~~d~~g~-lWigT~~G-l~   85 (758)
T 3ott_A           21 ASVVSCFLQDSEGLIW-IGSNKGL--FSYDGYST---QQHFT--Y-----GENNNTRIYCGVIIDNTY-LYMGTDNG-IL   85 (758)
T ss_dssp             CCCEEEEEECTTSCEE-EEESSCE--EEECSSCE---EECSC--T-----TSTTSSCEEEEEEETTTE-EEEEETTE-EE
T ss_pred             cceEEEEEECCCCCEE-EEECCCc--cccCCCce---EEEEc--c-----CCCCCceEEEEEEcCCCc-EEEEeCCC-eE
Confidence            4568888887777544 4444443  33443211   11100  0     001235688887777764 55566655 78


Q ss_pred             EEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeec---ccCCcceEEEEEEEcCCCCceE
Q 015490          193 VFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPL---AKENDELFASCRFSPLNNEDYV  269 (406)
Q Consensus       193 vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  269 (406)
                      .||..+.+...........|.++.. .++ .|..++.+ .+..+|..+++.....   .......+.++....++.    
T Consensus        86 ~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~----  158 (758)
T 3ott_A           86 VYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQ----  158 (758)
T ss_dssp             EEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCC----
T ss_pred             EEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCC----
Confidence            8998776433211111225676654 345 46666665 6888998765543220   111223466666666665    


Q ss_pred             EEEEEEcCCCcEEEEEeCCCceEEEEeeec------CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccc
Q 015490          270 LYIAAITDRGASIVTWNTTTWKRIRTKQVV------REPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHL  343 (406)
Q Consensus       270 l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~------~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  343 (406)
                      + ++++  . +.|..+|..+.+... +...      ...|.++...+++..|.+|+. +-+..+|..+++...... ...
T Consensus       159 l-Wigt--~-~Gl~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~-l~~  231 (758)
T 3ott_A          159 I-YVGT--Y-NGLCRYIPSNGKFEG-IPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEA-FHN  231 (758)
T ss_dssp             E-EEEE--T-TEEEEEETTTTEEEE-ECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEE-EEE
T ss_pred             E-EEEe--C-CCHhhCccCCCceEE-ecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccC-CCC
Confidence            2 3333  2 357788887765322 2111      124888888887776666664 458889987765432211 233


Q ss_pred             cceEEEEEcCCCCeEEEEECCCcEEEEEecCC
Q 015490          344 GIVTALAFSYDSRALVSASMDSSVRVTVIEDK  375 (406)
Q Consensus       344 ~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~  375 (406)
                      ..|.++....+|.+.+ |+.+ -+.+++..++
T Consensus       232 ~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~  261 (758)
T 3ott_A          232 NSIKSLALDGNGDLLA-GTDN-GLYVYHNDTT  261 (758)
T ss_dssp             EEEEEEEECTTCCEEE-EETT-EEEEECCTTS
T ss_pred             CeEEEEEEcCCCCEEE-EeCC-ceeEEecCCC
Confidence            4588888888887665 4444 5777776553

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.44  E-value=1.1  Score=38.53  Aligned_cols=246  Identities=11%  Similarity=0.058  Sum_probs=134.8

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEecC-------------
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQN-------------  134 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~-------------  134 (406)
                      .++.++++...+        .-.++.++.+...     ...+...    .+--+++++.+|+.+...             
T Consensus        24 ~g~~iy~~n~~d--------~~~ly~~~~dg~~-----~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n   86 (302)
T 3s25_A           24 SDGEVFFSNTND--------NGRLYAMNIDGSN-----IHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYD   86 (302)
T ss_dssp             ETTEEEEEEGGG--------TTEEEEEETTSCS-----CEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCC
T ss_pred             eCCEEEEEeCCC--------CceEEEEcCCCCC-----CEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccC
Confidence            556666653321        1267777776533     2222221    245678999999988632             


Q ss_pred             CeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEee----CCCeEEEEeCCCcceEeeeeccCC
Q 015490          135 SCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGS----ENGNLRVFKWPSLEIILNESEAHA  210 (406)
Q Consensus       135 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~----~dg~i~vwd~~~~~~~~~~~~~~~  210 (406)
                      .-.|+.++....+....              ...  .+..|+++++.|+...    .+..|...+++... ...+..+..
T Consensus        87 ~~~Iy~i~~dg~~~~~l--------------~~~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~  149 (302)
T 3s25_A           87 RNSLCRIKRNGHGSTVL--------------DPD--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL  149 (302)
T ss_dssp             SEEEEEEETTSCCCEEE--------------ECS--CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC
T ss_pred             CCeEEEEeCCCCcceEe--------------ecC--CccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc
Confidence            45777777664431111              011  1236778888888765    23456666665333 333433322


Q ss_pred             ceeEEEEccCCCEEEEEeC-CCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC
Q 015490          211 SVKDLSFSPDGKFLVSLGN-RGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT  289 (406)
Q Consensus       211 ~i~~~~~s~~~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~  289 (406)
                          ..++++++.|+..+. ...|.+.++..+.....+..  .  . ...+.|++..   ++.+.. .....|..-++..
T Consensus       150 ----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~--~--~-~~~~~P~g~~---iy~t~~-~~~~~I~~~~ldG  216 (302)
T 3s25_A          150 ----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC--N--C-YKPVVLDDTN---VYYMDV-NRDNAIVHVNINN  216 (302)
T ss_dssp             ----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS--C--E-EEEEEEETTE---EEEEEG-GGTTEEEEECSSS
T ss_pred             ----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC--C--c-cceeeecCCE---EEEEEc-CCCcEEEEEECCC
Confidence                456778888887775 56888888876654443321  1  1 1235688885   333322 2235788888876


Q ss_pred             ceEEEEeeecCCCeEEEEEcCCCCEEEEEeC--CCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEE-CCCc
Q 015490          290 WKRIRTKQVVREPVSSFNVSADGKLLAVGTA--SGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSAS-MDSS  366 (406)
Q Consensus       290 ~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s-~dg~  366 (406)
                      ... ..+.  ...+  ..|+|++++|+.+..  .+.|...++..... ..+..+   .+..  +++.+.+|+-.. ..+.
T Consensus       217 ~~~-~~Lt--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r-~~l~~~---~~~~--i~i~~d~Iy~td~~~~~  285 (302)
T 3s25_A          217 PNP-VVLT--EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTGF-KELAKG---EFCN--INVTSQYVYFTDFVSNK  285 (302)
T ss_dssp             CCC-EECS--CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSCCC-EEEEES---CEEE--EEECSSEEEEEETTTCC
T ss_pred             CCe-EEEe--CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCCcc-EEeeCC---ccce--EEEeCCEEEEEECCCCe
Confidence            542 3332  2233  447888999887643  45677778764433 333212   2333  344556665444 3345


Q ss_pred             EEEEE
Q 015490          367 VRVTV  371 (406)
Q Consensus       367 i~iw~  371 (406)
                      |..-+
T Consensus       286 i~~~~  290 (302)
T 3s25_A          286 EYCTS  290 (302)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            44433

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.28  E-value=1  Score=43.90  Aligned_cols=196  Identities=10%  Similarity=0.080  Sum_probs=98.9

Q ss_pred             CCCCEEEEeeCC----CeEEEEeCCCcceEeee-e-----ccCC-ceeEEEEcc-CCCEEEEEeCC------CCEEEEEc
Q 015490          177 SEGTIFAAGSEN----GNLRVFKWPSLEIILNE-S-----EAHA-SVKDLSFSP-DGKFLVSLGNR------GPGRVWDL  238 (406)
Q Consensus       177 ~~g~~l~~~~~d----g~i~vwd~~~~~~~~~~-~-----~~~~-~i~~~~~s~-~~~~l~s~s~d------~~i~iwd~  238 (406)
                      .++.+++.|+.+    ..+.+||..+++....- .     .... .-.+++..+ +++.++.|+.+      ..+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            466777788753    46889998776543322 1     0111 122333333 67777777643      35788998


Q ss_pred             CCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEee-----ecCCCeEEEEEcCC-C
Q 015490          239 ASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQ-----VVREPVSSFNVSAD-G  312 (406)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~-----~~~~~i~~~~~sp~-~  312 (406)
                      .+.+-...-.......-.+++...++.    +|++......+.+.+||..+.+-...-.     .......++.+..+ +
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~----iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~  551 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDGN----VLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSK  551 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTSC----EEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTT
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCCE----EEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCC
Confidence            876543321111111111222222443    3333222222278999998755322211     11122233555555 6


Q ss_pred             CEEEEEeC--C-----CcEEEEECCCceE-----EEEeec--ccccceEEEEEcCCCCeEEEEECC--------CcEEEE
Q 015490          313 KLLAVGTA--S-----GDISIIDSSSLQV-----RTAVKK--AHLGIVTALAFSYDSRALVSASMD--------SSVRVT  370 (406)
Q Consensus       313 ~~l~~~~~--d-----g~i~i~d~~~~~~-----~~~~~~--~~~~~v~~~~~sp~~~~l~s~s~d--------g~i~iw  370 (406)
                      +.++.|+.  +     ..+.+||+.+..-     -..+..  .....-.++....+++.++.|+.+        ..|.+|
T Consensus       552 ~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y  631 (695)
T 2zwa_A          552 QGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISL  631 (695)
T ss_dssp             EEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEE
T ss_pred             EEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEE
Confidence            67777765  2     3588999887661     111111  011111133333346777777743        458899


Q ss_pred             EecCCc
Q 015490          371 VIEDKK  376 (406)
Q Consensus       371 ~~~~~~  376 (406)
                      |+.+.+
T Consensus       632 d~~t~~  637 (695)
T 2zwa_A          632 DPLSET  637 (695)
T ss_dssp             ETTTTE
T ss_pred             ECCCCe
Confidence            987653

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.10  E-value=2.7  Score=40.97  Aligned_cols=160  Identities=16%  Similarity=0.156  Sum_probs=82.6

Q ss_pred             EEECCCCCEEEEeeCC------CeEEEEeCCCcceEeeeeccCC-ceeEEEEccCCCEEEEEeCCC--CEEEEEcCCCee
Q 015490          173 LTFDSEGTIFAAGSEN------GNLRVFKWPSLEIILNESEAHA-SVKDLSFSPDGKFLVSLGNRG--PGRVWDLASSAV  243 (406)
Q Consensus       173 ~~~s~~g~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~s~s~d~--~i~iwd~~~~~~  243 (406)
                      +.+..++++++.|+.+      ..+.+||..+.+-...-..... .-.+.+...+++.++.|+.++  .+.+||..+.+-
T Consensus       446 ~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W  525 (695)
T 2zwa_A          446 TTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIF  525 (695)
T ss_dssp             EEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEE
T ss_pred             EEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCce
Confidence            3343377788888653      3588999887543322111111 112233324788888887654  699999988764


Q ss_pred             eeecc---cC-CcceEEEEEEEcCCCCceEEEEEEEcCC-----CcEEEEEeCCCceE-----EEEeee---cCCCeEEE
Q 015490          244 ATPLA---KE-NDELFASCRFSPLNNEDYVLYIAAITDR-----GASIVTWNTTTWKR-----IRTKQV---VREPVSSF  306 (406)
Q Consensus       244 ~~~~~---~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~i~~~d~~~~~~-----~~~~~~---~~~~i~~~  306 (406)
                      ...-.   .. .......+.+......   +|++.....     ...+..||+.+.+-     ...+..   ....-.++
T Consensus       526 ~~~~~~g~~p~~r~~~~a~v~~~~~~~---iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~  602 (695)
T 2zwa_A          526 KDVTPKDEFFQNSLVSAGLEFDPVSKQ---GIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQI  602 (695)
T ss_dssp             EECCCSSGGGGSCCBSCEEEEETTTTE---EEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEE
T ss_pred             EEccCCCCCCCcccceeEEEEeCCCCE---EEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceE
Confidence            33221   00 1111123445544332   333322211     25688999877651     111211   11111223


Q ss_pred             EEcCCCCEEEEEeC--------CCcEEEEECCCceEE
Q 015490          307 NVSADGKLLAVGTA--------SGDISIIDSSSLQVR  335 (406)
Q Consensus       307 ~~sp~~~~l~~~~~--------dg~i~i~d~~~~~~~  335 (406)
                      +...+++.++.|+.        ...+.+||+.+.+-.
T Consensus       603 ~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~  639 (695)
T 2zwa_A          603 KYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT  639 (695)
T ss_dssp             EEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred             EEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence            33334677777774        345999999877654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=93.83  E-value=4.4  Score=42.52  Aligned_cols=200  Identities=9%  Similarity=0.091  Sum_probs=112.0

Q ss_pred             EEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCC-eeeeecccC
Q 015490          172 ALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASS-AVATPLAKE  250 (406)
Q Consensus       172 ~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~~  250 (406)
                      +.-.+|..+.+|.-. ..++.|||+++...+....-. ..|.--.|-.+. .|+-.+ +..|+-|++... .+.+.+..+
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~-e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~  145 (1630)
T 1xi4_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRH  145 (1630)
T ss_pred             hhccCCCcceEEEec-CCeEEEeehHHhhhhcccccC-CCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcc
Confidence            345677777777654 679999999887766555433 346666675443 344444 448999999642 333333322


Q ss_pred             ---CcceEEEEEEEcCCCCceEEEEEEE---cCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEc--C-CCCEEEEEeC-
Q 015490          251 ---NDELFASCRFSPLNNEDYVLYIAAI---TDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVS--A-DGKLLAVGTA-  320 (406)
Q Consensus       251 ---~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~s--p-~~~~l~~~~~-  320 (406)
                         .+..|..-..+++.+.  .+++..+   +.-.|.+.+|....+ ....+.+|.+....+...  + ....++.+.. 
T Consensus       146 ~~L~~~QIinY~~d~~~kW--~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~  222 (1630)
T 1xi4_A          146 SSLAGCQIINYRTDAKQKW--LLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRG  222 (1630)
T ss_pred             hhcccCeeEEeeeCCCCCe--EEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEec
Confidence               1233444455555553  3322222   123477888887653 233445554333333322  1 1223333322 


Q ss_pred             --CCcEEEEECCCc---eEE------EEee--cccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCC
Q 015490          321 --SGDISIIDSSSL---QVR------TAVK--KAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKS  378 (406)
Q Consensus       321 --dg~i~i~d~~~~---~~~------~~~~--~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~  378 (406)
                        .+.++|.++...   ...      ..+.  ....+-..++..++.-..+...+.-|.|+++|+.++..+
T Consensus       223 ~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i  293 (1630)
T 1xi4_A          223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI  293 (1630)
T ss_pred             CCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhh
Confidence              368899888542   111      0111  011233457777877677888889999999999998763

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=93.34  E-value=1.6  Score=40.70  Aligned_cols=128  Identities=17%  Similarity=0.184  Sum_probs=77.9

Q ss_pred             cCCCCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCC
Q 015490          111 TDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSEN  188 (406)
Q Consensus       111 ~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  188 (406)
                      .-...+..+.++|||+++++++  +.++.+++++.........+ ..+........+-.-.....+|.++|....+---|
T Consensus       320 P~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~-~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfid  398 (638)
T 3sbq_A          320 PVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKL-ADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFID  398 (638)
T ss_dssp             EESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCC-SCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTT
T ss_pred             eCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccc-cCcccceEeeccCCCcccEEEECCCCceEeeeeec
Confidence            3456778999999999999988  77778877663211000000 01122223333334556788999999655566679


Q ss_pred             CeEEEEeCCCc----------ceEeeeeccCCceeEEEE------ccCCCEEEEEe---CCCCE----------EEEEcC
Q 015490          189 GNLRVFKWPSL----------EIILNESEAHASVKDLSF------SPDGKFLVSLG---NRGPG----------RVWDLA  239 (406)
Q Consensus       189 g~i~vwd~~~~----------~~~~~~~~~~~~i~~~~~------s~~~~~l~s~s---~d~~i----------~iwd~~  239 (406)
                      ..|.-|++...          ..+.++.-|. .+-.+.-      .+||++|++..   .|+.+          .+.|+.
T Consensus       399 SqvvkWni~~a~~~~~g~~~~~v~~k~dv~Y-qpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIs  477 (638)
T 3sbq_A          399 SQVVKWNMEEAVRAYKGEKVNYIKQKLDVHY-QPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDIS  477 (638)
T ss_dssp             TEEEEEEHHHHHHHHTTCCCCCEEEEEECSS-CEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECS
T ss_pred             ceEEEEeccHHHHHhcCccCCeeeecccccc-CCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecC
Confidence            99999998543          2333333333 2333333      57899999985   35433          677774


Q ss_pred             C
Q 015490          240 S  240 (406)
Q Consensus       240 ~  240 (406)
                      .
T Consensus       478 G  478 (638)
T 3sbq_A          478 G  478 (638)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=92.72  E-value=2.2  Score=39.27  Aligned_cols=111  Identities=15%  Similarity=0.138  Sum_probs=63.2

Q ss_pred             CceeEEEEccCCC-EEEEEeCCCCEEEEEcCCCe---eeeecc----c----CCcceEEEEEEEcCCCCceEEEEEEEcC
Q 015490          210 ASVKDLSFSPDGK-FLVSLGNRGPGRVWDLASSA---VATPLA----K----ENDELFASCRFSPLNNEDYVLYIAAITD  277 (406)
Q Consensus       210 ~~i~~~~~s~~~~-~l~s~s~d~~i~iwd~~~~~---~~~~~~----~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~  277 (406)
                      ...+.|+|.|||. .|+++...|.|++++.....   .+..+.    .    ........++|+|+-..+..+|+..+..
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            3568899999996 56667788999999753221   111111    0    0123466899999732222455555433


Q ss_pred             CC----------cEEEEEeCC----------CceEEEEeee--cCCCeEEEEEcCCCCEEEEEeC
Q 015490          278 RG----------ASIVTWNTT----------TWKRIRTKQV--VREPVSSFNVSADGKLLAVGTA  320 (406)
Q Consensus       278 ~~----------~~i~~~d~~----------~~~~~~~~~~--~~~~i~~~~~sp~~~~l~~~~~  320 (406)
                      .+          ..|.-|.+.          +.+.+..+..  .......|.|.|||.+.++.+.
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence            22          244445442          1233333321  2345789999999987666544

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=92.06  E-value=9.5  Score=37.19  Aligned_cols=200  Identities=9%  Similarity=0.077  Sum_probs=105.8

Q ss_pred             EEE-ECCCCCEEEEe-e----CCCeEEEEeCCCcceEeeeeccCC--------ceeEEEEccCCCEEEEEe---------
Q 015490          172 ALT-FDSEGTIFAAG-S----ENGNLRVFKWPSLEIILNESEAHA--------SVKDLSFSPDGKFLVSLG---------  228 (406)
Q Consensus       172 ~~~-~s~~g~~l~~~-~----~dg~i~vwd~~~~~~~~~~~~~~~--------~i~~~~~s~~~~~l~s~s---------  228 (406)
                      .+. ++|++++++.+ +    .-..++++|+.+++.+..-.....        ....++|..+ ..++.+.         
T Consensus       133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~-~~~~~~~~~~~~~~~~  211 (711)
T 4hvt_A          133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINK-DTIIFNLVLHKNEITS  211 (711)
T ss_dssp             EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEET-TEEEECCCCSTTCBCT
T ss_pred             ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECC-CEEEEEeCCCCCCcCc
Confidence            344 88999877765 2    223799999999887642211111        1134588744 4444432         


Q ss_pred             --CCCCEEEEEcCCCee--eeecccCCcceEEEEEEEcCCCCce-EEEEEEE-cCCCcEEEEEeCCC--ceEEEEeeecC
Q 015490          229 --NRGPGRVWDLASSAV--ATPLAKENDELFASCRFSPLNNEDY-VLYIAAI-TDRGASIVTWNTTT--WKRIRTKQVVR  300 (406)
Q Consensus       229 --~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~-~~~~~~i~~~d~~~--~~~~~~~~~~~  300 (406)
                        ....++.|.+.+...  ...+.............+++++... .+++... ......+++.|...  ++ ...+....
T Consensus       212 ~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~  290 (711)
T 4hvt_A          212 SLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMPS  290 (711)
T ss_dssp             TSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSCT
T ss_pred             CCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecCC
Confidence              124578887765421  2223222223233455566665421 1233333 33446777777653  33 23333222


Q ss_pred             CCeEEEEEcCCCCEEEEE----------eCCCcEEEEECCCce-------EEEE-eecccccceEEEEEcCCCCeEEEEE
Q 015490          301 EPVSSFNVSADGKLLAVG----------TASGDISIIDSSSLQ-------VRTA-VKKAHLGIVTALAFSYDSRALVSAS  362 (406)
Q Consensus       301 ~~i~~~~~sp~~~~l~~~----------~~dg~i~i~d~~~~~-------~~~~-~~~~~~~~v~~~~~sp~~~~l~s~s  362 (406)
                      ..  .+..+.++.+++..          ...+.|...|+.++.       .... +.......+..+.|..+ .++++..
T Consensus       291 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~  367 (711)
T 4hvt_A          291 DA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATY  367 (711)
T ss_dssp             TC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEE
T ss_pred             cc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEE
Confidence            21  23334455555532          136778999987642       1122 32233456778999876 5667777


Q ss_pred             CCCc--EEEEEecCCc
Q 015490          363 MDSS--VRVTVIEDKK  376 (406)
Q Consensus       363 ~dg~--i~iw~~~~~~  376 (406)
                      .++.  |.++++.+++
T Consensus       368 ~~~~~~l~~~~~~~g~  383 (711)
T 4hvt_A          368 DNVVAKVVTFTLENEQ  383 (711)
T ss_dssp             ETTEEEEEEECEETTE
T ss_pred             ECCEEEEEEEECCCCc
Confidence            7764  6677776653

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=91.33  E-value=8.2  Score=34.97  Aligned_cols=223  Identities=9%  Similarity=0.081  Sum_probs=123.2

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEeccccc-ceeecceeccceeeecccccC
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENT-EIRRLGVKISEKVLSQLENVG  168 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  168 (406)
                      .+..++.+.    .+.+..+.-.+ .|.-=.|-.+ +.|+..++..+  |.|+..... ..+.++.      ...+. ..
T Consensus        87 ~lQiFnle~----K~klks~~~~e-~VvfWkWis~-~~l~lVT~taV--yHWsi~~~s~P~kvFdR------~~~L~-~~  151 (494)
T 1bpo_A           87 TLQIFNIEM----KSKMKAHTMTD-DVTFWKWISL-NTVALVTDNAV--YHWSMEGESQPVKMFDR------HSSLA-GC  151 (494)
T ss_dssp             EEEEEETTT----TEEEEEEECSS-CCCEEEEEET-TEEEEECSSEE--EEEESSSSCCCEEEEEC------CGGGT-TC
T ss_pred             eEEEEchHH----hhhhcceecCC-CceEEEecCC-CeEEEEcCCee--EEecccCCCCchhheec------chhcc-cc
Confidence            444445444    22444444434 4555566544 34555556654  445543221 1111111      00111 24


Q ss_pred             cEEEEEECCCCCEEEEee-------CCCeEEEEeCCCcceEeeeeccCCceeEEEEccC---CCEEEEEeC---CCCEEE
Q 015490          169 QQLALTFDSEGTIFAAGS-------ENGNLRVFKWPSLEIILNESEAHASVKDLSFSPD---GKFLVSLGN---RGPGRV  235 (406)
Q Consensus       169 ~v~~~~~s~~g~~l~~~~-------~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~---~~~l~s~s~---d~~i~i  235 (406)
                      .|..-..+++.++++..+       -.|.+.+|..+.+.. +.+.+|-.....+....+   .+.++.+..   .+.++|
T Consensus       152 QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi  230 (494)
T 1bpo_A          152 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI  230 (494)
T ss_dssp             EEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-EEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEE
T ss_pred             eEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-chheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEE
Confidence            577778888888877543       247889999876543 344454433333332211   123444443   268888


Q ss_pred             EEcCCC---e-----eeeeccc---CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeE
Q 015490          236 WDLASS---A-----VATPLAK---ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVS  304 (406)
Q Consensus       236 wd~~~~---~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~  304 (406)
                      -++...   .     ....+..   ...+...++..++...   ++|++   ..-|.|++||+.++.++..-+.....|.
T Consensus       231 ~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg---viyvi---TK~G~i~lyDleTgt~i~~nrIs~~~iF  304 (494)
T 1bpo_A          231 IEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD---VVFLI---TKYGYIHLYDLETGTCIYMNRISGETIF  304 (494)
T ss_dssp             EECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT---EEEEE---ETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             EEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCC---EEEEE---ecCceEEEEecccceeeeeecccCCceE
Confidence            888543   1     1111111   1123344677777665   34443   4689999999999999988887777887


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCceE
Q 015490          305 SFNVSADGKLLAVGTASGDISIIDSSSLQV  334 (406)
Q Consensus       305 ~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~  334 (406)
                      ..+.+....-++.....|.|.-..++....
T Consensus       305 ~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~i  334 (494)
T 1bpo_A          305 VTAPHEATAGIIGVNRKGQVLSVCVEEENI  334 (494)
T ss_dssp             EEEEETTTTEEEEEETTCEEEEEEECTTTH
T ss_pred             EecccCCCCcEEEEccCceEEEEEEccccc
Confidence            777666655666667888887777665443

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=90.32  E-value=7.6  Score=32.86  Aligned_cols=185  Identities=13%  Similarity=0.071  Sum_probs=92.2

Q ss_pred             cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecc
Q 015490          169 QQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLA  248 (406)
Q Consensus       169 ~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  248 (406)
                      .|..++...+. .++. . ||.|+.|-......+..-......|..++...+  +.+... +|.++.|-......+. +.
T Consensus        64 ~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg-~~  136 (282)
T 3qhy_B           64 GVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTT-VP  136 (282)
T ss_dssp             CCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTS-CC
T ss_pred             CEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCC-CC
Confidence            55666655432 3333 4 899999976432221111111235777766543  344445 8999999765422111 11


Q ss_pred             cCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 015490          249 KENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIID  328 (406)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d  328 (406)
                      ......+..++.....       .++. . ++.|+.|-......+.........|..++...+. .++.  .||.|+.|-
T Consensus       137 ~~~~~~i~~i~~G~~~-------~~~l-~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG  204 (282)
T 3qhy_B          137 AEAQSGVTALDGGVYT-------ALAV-K-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWG  204 (282)
T ss_dssp             GGGGSSEEEEEECSSE-------EEEE-E-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEE
T ss_pred             ccCCCCeEEEEcccCE-------EEEE-E-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCE-EEEE--ECCeEEEEE
Confidence            1112235444443322       1222 2 6889999765422211111112457777765443 3333  589999997


Q ss_pred             CCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490          329 SSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       329 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~  376 (406)
                      ......+.... .....|..++...+  +.+.-. ||.|+.|--....
T Consensus       205 ~n~~gqlg~p~-~~~~~v~~i~~G~~--h~~al~-~g~v~~wG~n~~g  248 (282)
T 3qhy_B          205 DNRYKQTTVPT-EALSGVSAIASGEW--YSLALK-NGKVIAWGSSRTA  248 (282)
T ss_dssp             CCTTSTTCCCG-GGGSSCCEEEECSS--CEEEEE-TTEEEEESTTCCC
T ss_pred             CCCCCCCCCCc-ccCCCceEEEcCCC--EEEEEE-CCEEEEecCCCCc
Confidence            65432221111 12234667765543  333334 9999999765543

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=89.98  E-value=15  Score=35.94  Aligned_cols=238  Identities=11%  Similarity=0.036  Sum_probs=124.0

Q ss_pred             CCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEE
Q 015490          114 DLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRV  193 (406)
Q Consensus       114 ~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~v  193 (406)
                      ..|.++...++|...+ +..+.  |+.++..+... ..+..+ .    ........|.++....++..|..|+. +-+..
T Consensus       146 ~~i~~i~~d~~g~lWi-gt~~G--l~~~~~~~~~~-~~~~~~-~----~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~  215 (758)
T 3ott_A          146 NTIYSIIRTKDNQIYV-GTYNG--LCRYIPSNGKF-EGIPLP-V----HSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQ  215 (758)
T ss_dssp             SCEEEEEECTTCCEEE-EETTE--EEEEETTTTEE-EEECCC-C----CTTCSSCCEEEEEEETTTTEEEEEEE-EEEEE
T ss_pred             CeEEEEEEcCCCCEEE-EeCCC--HhhCccCCCce-EEecCC-C----ccccccceeEEEEEECCCCEEEEEEC-CCCeE
Confidence            4577777777776555 33433  44455433221 111100 0    00001234788888777765555654 45888


Q ss_pred             EeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecc------cCCcceEEEEEEEcCCCCc
Q 015490          194 FKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLA------KENDELFASCRFSPLNNED  267 (406)
Q Consensus       194 wd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  267 (406)
                      +|..+++...........|.++....+|.+.+ |+. +-+.+++..+++......      .-....|.++....++.  
T Consensus       216 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~--  291 (758)
T 3ott_A          216 YFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN--  291 (758)
T ss_dssp             EETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC--
T ss_pred             EcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC--
Confidence            88776654322111223688888887777544 554 458888887654322111      01223477777666665  


Q ss_pred             eEEEEEEEcCCCcEEEEEeCCCceEEEEee-----ecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCce--EEEEeec
Q 015490          268 YVLYIAAITDRGASIVTWNTTTWKRIRTKQ-----VVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQ--VRTAVKK  340 (406)
Q Consensus       268 ~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~-----~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~  340 (406)
                         +++++.  .| +.++.....-......     .....|.++.-..+|++.+ |+.+| +..++..+++  ....+..
T Consensus       292 ---lWiGT~--~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~~~~~~~~~~~~  363 (758)
T 3ott_A          292 ---IWLGTD--YG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANG-LIRFTDPAGERHDAIWYRM  363 (758)
T ss_dssp             ---EEEEES--SS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTE-EEEESCTTSSCCCCEEECT
T ss_pred             ---EEEEeC--Cc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCc-ceeecccccccceeEEecc
Confidence               244442  34 4444332111111110     1124588888888887554 45555 6667655432  1111110


Q ss_pred             ------ccccceEEEEEcCCCCeEEEEECCCcEEEEEecCC
Q 015490          341 ------AHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDK  375 (406)
Q Consensus       341 ------~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~  375 (406)
                            .....|.++.-..+|++.+ |+ ++-+..++..++
T Consensus       364 ~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~  402 (758)
T 3ott_A          364 GDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATR  402 (758)
T ss_dssp             TCSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTT
T ss_pred             CCcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCC
Confidence                  1123588888888887655 44 456888887654

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=89.74  E-value=12  Score=34.31  Aligned_cols=74  Identities=14%  Similarity=0.126  Sum_probs=39.8

Q ss_pred             CCeEEEEEcC-------CCCEEEEEeCCCcEEEEECCCceE---EEEe-e-------cccccceEEEEEcCCCCeEEEEE
Q 015490          301 EPVSSFNVSA-------DGKLLAVGTASGDISIIDSSSLQV---RTAV-K-------KAHLGIVTALAFSYDSRALVSAS  362 (406)
Q Consensus       301 ~~i~~~~~sp-------~~~~l~~~~~dg~i~i~d~~~~~~---~~~~-~-------~~~~~~v~~~~~sp~~~~l~s~s  362 (406)
                      ..+..+.|-.       .|.+|+ +...+.|....++....   ...+ .       ......+..+...|||.++++..
T Consensus       276 ~Ap~G~~~Y~G~~fP~~~g~~f~-~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~~v~~~pdG~Lyv~~~  354 (463)
T 2wg3_C          276 GPLVGGFVYRGCQSERLYGSYVF-GDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYFSGHILGFGEDELGEVYILSS  354 (463)
T ss_dssp             -CEEEEEECCCSSCTTTTTCEEE-EETTSCEEEEEC-----CCEEEEECEEETTSSCSCCCSEEEEEEECTTCCEEEEEE
T ss_pred             ccccceEEEeCCCChhhcceEEE-ecCCCcEEEEEeCCCCceeeEEEeecCCcccccccccCcceEEEECCCCCEEEEec
Confidence            3567777743       234444 44457776666643321   1111 0       01235689999999999877765


Q ss_pred             CC-----CcEEEEEecCC
Q 015490          363 MD-----SSVRVTVIEDK  375 (406)
Q Consensus       363 ~d-----g~i~iw~~~~~  375 (406)
                      ..     ..=+||.+..+
T Consensus       355 ~~~~~~~~~G~I~Ri~~p  372 (463)
T 2wg3_C          355 SKSMTQTHNGKLYKIVDP  372 (463)
T ss_dssp             SSCGGGCSSEEEEEEECT
T ss_pred             cCCcccCCCCcEEEecCc
Confidence            21     23467888643

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=85.66  E-value=19  Score=31.96  Aligned_cols=171  Identities=8%  Similarity=0.015  Sum_probs=87.9

Q ss_pred             eEEEEeCCCc--ceEeeeecc------CCceeEEEEc---cC---CCEEEEE--eCCCCEEEEEcCCCeeeeecc----c
Q 015490          190 NLRVFKWPSL--EIILNESEA------HASVKDLSFS---PD---GKFLVSL--GNRGPGRVWDLASSAVATPLA----K  249 (406)
Q Consensus       190 ~i~vwd~~~~--~~~~~~~~~------~~~i~~~~~s---~~---~~~l~s~--s~d~~i~iwd~~~~~~~~~~~----~  249 (406)
                      .|.+||+.+.  +.++.+.-.      ...+.++.+.   |+   +.-+|..  +....|.|+|+.+++.-+.+.    .
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p  203 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA  203 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence            4666677666  555444321      2357778776   22   1233333  246789999999887655431    1


Q ss_pred             CC-------------cceEEEEEEEcCCCC-ceEEEEEEEcCCCcEEEEEe---CCC---ceEEEEeeec--CCCeEEEE
Q 015490          250 EN-------------DELFASCRFSPLNNE-DYVLYIAAITDRGASIVTWN---TTT---WKRIRTKQVV--REPVSSFN  307 (406)
Q Consensus       250 ~~-------------~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~i~~~d---~~~---~~~~~~~~~~--~~~i~~~~  307 (406)
                      ..             ...+..++++|+... ...||....++  ..++-..   ++.   ...++.+-..  ...-..++
T Consensus       204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss--~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~  281 (381)
T 3q6k_A          204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA--IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALA  281 (381)
T ss_dssp             CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC--SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEE
T ss_pred             ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC--CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEE
Confidence            10             124567778876211 11344433322  2222222   111   1112222111  13344567


Q ss_pred             Ec-CCCCEEEEEeCCCcEEEEECCC-c---eEEEEee-cccccceEEEEEcCCCCeEEEEE
Q 015490          308 VS-ADGKLLAVGTASGDISIIDSSS-L---QVRTAVK-KAHLGIVTALAFSYDSRALVSAS  362 (406)
Q Consensus       308 ~s-p~~~~l~~~~~dg~i~i~d~~~-~---~~~~~~~-~~~~~~v~~~~~sp~~~~l~s~s  362 (406)
                      ++ .+|.++++--..+.|..|+..+ .   +....+. ...-..+..+.+.++|.+.+..+
T Consensus       282 ~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn  342 (381)
T 3q6k_A          282 YDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN  342 (381)
T ss_dssp             ECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred             EeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence            76 5777666666788899999875 1   1122222 12223467888877877655553

>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A

Probab=83.99  E-value=2.2  Score=24.05  Aligned_cols=29  Identities=17%  Similarity=0.328  Sum_probs=22.0

Q ss_pred             CCCchHHH-----HHHHHHHHHHHHHHHhcCCCC
Q 015490          378 SGGLNLWI-----IIFILLLAMAAYFVKAKGIIP  406 (406)
Q Consensus       378 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  406 (406)
                      ...+|+|.     +..+++++++.+.|.|.||+.
T Consensus         5 ~~~vp~wiIi~s~l~GLllL~li~~~LwK~GFFk   38 (42)
T 2k1a_A            5 ERAIPIWWVLVGVLGGLLLLTILVLAMWKVGFFK   38 (42)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred             cCCcchHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence            34688998     445557888889999999973

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=82.16  E-value=46  Score=33.72  Aligned_cols=38  Identities=13%  Similarity=0.145  Sum_probs=33.2

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEee
Q 015490          302 PVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVK  339 (406)
Q Consensus       302 ~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  339 (406)
                      .+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            56778888888999999999999999999999887653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	406
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-16
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-14
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-11
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-11
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.004
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-11
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-09
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	8e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.002
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-09
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	7e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	9e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.002
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.004
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.001
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.002
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	4e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.003
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	1e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.003
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.004
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	9e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.003
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	9e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.001

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.5 bits (189), Expect = 2e-16
 Identities = 37/263 (14%), Positives = 92/263 (34%), Gaps = 16/263 (6%)

Query: 121 IHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGT 180
           +  H D +     +           +  I+    +  E + +   +     +++    G 
Sbjct: 55  LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD 114

Query: 181 IFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLAS 240
              + S +  +++++  +   +   +     V+ +  + DG  + S  N    RVW +A+
Sbjct: 115 HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT 174

Query: 241 SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGA--------------SIVTWN 286
                 L +E+  +     ++P ++   +        + +              +I  W+
Sbjct: 175 KECKAEL-REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 233

Query: 287 TTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIV 346
            +T   + T       V      + GK +        + + D  + +       AH   V
Sbjct: 234 VSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC-MKTLNAHEHFV 292

Query: 347 TALAFSYDSRALVSASMDSSVRV 369
           T+L F   +  +V+ S+D +V+V
Sbjct: 293 TSLDFHKTAPYVVTGSVDQTVKV 315

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.8 bits (125), Expect = 3e-08
 Identities = 12/66 (18%), Positives = 27/66 (40%)

Query: 172 ALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRG 231
            + F S G    + +++  LRV+ + +   +   +     V  L F     ++V+     
Sbjct: 252 GVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ 311

Query: 232 PGRVWD 237
             +VW+
Sbjct: 312 TVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.9 bits (120), Expect = 1e-07
 Identities = 25/174 (14%), Positives = 60/174 (34%), Gaps = 27/174 (15%)

Query: 175 FDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSF----------------- 217
            + +GT+ A+ S +  +RV+   + E      E    V+ +S+                 
Sbjct: 151 PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSET 210

Query: 218 ---SPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAA 274
                 G FL+S       ++WD+++      L   ++ +     F          +I +
Sbjct: 211 KKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVR-GVLFHSGGK-----FILS 264

Query: 275 ITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIID 328
             D   ++  W+    + ++T       V+S +       +  G+    + + +
Sbjct: 265 CADDK-TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.6 bits (114), Expect = 5e-07
 Identities = 32/171 (18%), Positives = 55/171 (32%), Gaps = 9/171 (5%)

Query: 207 EAH-ASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNN 265
             H + V  + F P    +VS       +VWD  +      L    D +           
Sbjct: 14  SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL 73

Query: 266 EDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDIS 325
                    I         W+   ++ IRT       VSS ++  +G  +   +    I 
Sbjct: 74  LASCSADMTIKL-------WDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK 126

Query: 326 IIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKK 376
           + +  +          H   V  +  + D   + S S D +VRV V+  K+
Sbjct: 127 MWEVQTGY-CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE 176

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.5 bits (171), Expect = 5e-14
 Identities = 29/161 (18%), Positives = 57/161 (35%), Gaps = 6/161 (3%)

Query: 209 HASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDY 268
              V  LS +PD +  VS       ++WD+              ++  +  F P    + 
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN-AICFFP----NG 238

Query: 269 VLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIID 328
             +     D    +            +   +   ++S + S  G+LL  G    + ++ D
Sbjct: 239 NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298

Query: 329 SSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
           +     R  V   H   V+ L  + D  A+ + S DS +++
Sbjct: 299 ALKAD-RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.5 bits (145), Expect = 7e-11
 Identities = 15/136 (11%), Positives = 37/136 (27%), Gaps = 10/136 (7%)

Query: 102 SDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVL 161
                            +   P+G+       ++         +   +      I   + 
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT 274

Query: 162 SQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDG 221
           S          ++F   G +  AG ++ N  V+     +     +     V  L  + DG
Sbjct: 275 S----------VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324

Query: 222 KFLVSLGNRGPGRVWD 237
             + +       ++W+
Sbjct: 325 MAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.3 bits (134), Expect = 2e-09
 Identities = 24/151 (15%), Positives = 52/151 (34%), Gaps = 7/151 (4%)

Query: 179 GTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDL 238
             +F +G+ + + +++           +   + +  + F P+G    +  +    R++DL
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255

Query: 239 ASSAVATPLAKENDEL-FASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQ 297
            +       + +N      S  FS          + A  D   +   W+     R     
Sbjct: 256 RADQELMTYSHDNIICGITSVSFSKSGR-----LLLAGYDDF-NCNVWDALKADRAGVLA 309

Query: 298 VVREPVSSFNVSADGKLLAVGTASGDISIID 328
                VS   V+ DG  +A G+    + I +
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 28/202 (13%), Positives = 52/202 (25%), Gaps = 40/202 (19%)

Query: 207 EAH-ASVKDLSFSPDGKFLVSLGNRG-------------------PGRVWDLASSAVATP 246
             H A +  + +  D + LVS    G                      V   A +     
Sbjct: 52  RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNY 111

Query: 247 LAKENDEL-------------------FASCRFSPLNNEDYVLYIAAITDRGASIVTWNT 287
           +A    +                     A                   +    +   W+ 
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI 171

Query: 288 TTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVT 347
            T ++  T       V S +++ D +L   G       + D      R      H   + 
Sbjct: 172 ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR-QTFTGHESDIN 230

Query: 348 ALAFSYDSRALVSASMDSSVRV 369
           A+ F  +  A  + S D++ R+
Sbjct: 231 AICFFPNGNAFATGSDDATCRL 252

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.3 bits (152), Expect = 1e-11
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 301 EPVSSFNVSADGKLLAVGTASGDISIID-SSSLQVRTAVKKAHLGIVTALAFSYDSRALV 359
           EP+S    + D   +A+   + ++ I + S +  V+    K H G VT + ++ DS  +V
Sbjct: 8   EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV 67

Query: 360 SASMDSSVRV 369
           +   D +  V
Sbjct: 68  TCGTDRNAYV 77

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.2 bits (123), Expect = 5e-08
 Identities = 11/68 (16%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 172 ALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNES-EAH-ASVKDLSFSPDGKFLVSLGN 229
              ++ + T  A    N  + +++    + +     + H   V  + ++PD   +V+ G 
Sbjct: 12  CHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT 71

Query: 230 RGPGRVWD 237
                VW 
Sbjct: 72  DRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.9 bits (99), Expect = 4e-05
 Identities = 17/121 (14%), Positives = 41/121 (33%), Gaps = 11/121 (9%)

Query: 271 YIAAITDRGASIVTWNTTTWK-RIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDS 329
            +AA  D    + T+++   K     +  V +  S   ++A  +       + D      
Sbjct: 257 LVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERF-----QNLDKKASSE 311

Query: 330 SSLQVRTAVKKAHLGIVTALAFSYDSRA----LVSASMDSSVRVTVIEDKKKSGGLNLWI 385
            S      +   H   V+ ++     +A      +  MD  + +  +   + +   +L I
Sbjct: 312 GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALK-DLKI 370

Query: 386 I 386
           +
Sbjct: 371 V 371

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.8 bits (83), Expect = 0.004
 Identities = 8/82 (9%), Positives = 25/82 (30%), Gaps = 9/82 (10%)

Query: 211 SVKDLSFSPDGKFLVSLGNRGPGRVWDLASS--AVATPLAKENDELFASCRFSPLNNEDY 268
            +   +++ D   +    N     +++ + +       L + N ++     ++P +N   
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVT-GVDWAPDSN--- 64

Query: 269 VLYIAAITDRGASIVTWNTTTW 290
              I        +   W     
Sbjct: 65  --RIVTCGTDR-NAYVWTLKGR 83

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.1 bits (149), Expect = 4e-11
 Identities = 31/208 (14%), Positives = 62/208 (29%), Gaps = 51/208 (24%)

Query: 175 FDSEGTIFAAGSENGNLRV------FKWPSLEIILNESEAH-ASVKDLSFSPDGKFLVSL 227
              +G   AAGS +  +RV      F    L+        H  SV  + F+ DG+ +VS 
Sbjct: 213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 272

Query: 228 GNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNT 287
                 ++W+L ++   +                                      +   
Sbjct: 273 SLDRSVKLWNLQNANNKSD-------------------------------------SKTP 295

Query: 288 TTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVT 347
            +     T    ++ V S   + + + +  G+    +   D  S      + + H   V 
Sbjct: 296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN-PLLMLQGHRNSVI 354

Query: 348 ALA------FSYDSRALVSASMDSSVRV 369
           ++A         +     + S D   R+
Sbjct: 355 SVAVANGSSLGPEYNVFATGSGDCKARI 382

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.0 bits (133), Expect = 3e-09
 Identities = 42/230 (18%), Positives = 82/230 (35%), Gaps = 32/230 (13%)

Query: 172 ALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHAS------------------VK 213
            + F ++G   A G  N   +V++     ++   S+  A+                  ++
Sbjct: 67  CVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIR 125

Query: 214 DLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIA 273
            + FSPDGKFL +       R+WD           K    L    +     +        
Sbjct: 126 SVCFSPDGKFLATGAEDRLIRIWD-------IENRKIVMILQGHEQDIYSLDYFPSGDKL 178

Query: 274 AITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSS-- 331
                  ++  W+  T +   T  +     +      DGK +A G+    + + DS +  
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238

Query: 332 ----LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKK 377
               L         H   V ++ F+ D +++VS S+D SV++  +++   
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN 288

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 42/274 (15%), Positives = 97/274 (35%), Gaps = 30/274 (10%)

Query: 119 MAIHPHGDGIICALQNSCRLFEWDEVENTEIRRL----GVKISEKVLSQLENVGQQL--- 171
           +     G+ +      + ++  +   + + + RL          + L+   +    L   
Sbjct: 68  VKFSNDGEYLATGCNKTTQV--YRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIR 125

Query: 172 ALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRG 231
           ++ F  +G   A G+E+  +R++   + +I++        +  L + P G  LVS     
Sbjct: 126 SVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDR 185

Query: 232 PGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNT---- 287
             R+WDL +   +  L+ E+     +   SP + +      A   DR   +    T    
Sbjct: 186 TVRIWDLRTGQCSLTLSIEDG--VTTVAVSPGDGKYIA---AGSLDRAVRVWDSETGFLV 240

Query: 288 -TTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRT---------- 336
                   +    ++ V S   + DG+ +  G+    + + +  +   ++          
Sbjct: 241 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 300

Query: 337 -AVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
                 H   V ++A + +   ++S S D  V  
Sbjct: 301 EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLF 334

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 16/139 (11%), Positives = 45/139 (32%), Gaps = 26/139 (18%)

Query: 172 ALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAH------------ASVKDLSFSP 219
           ++ F  +G    +GS + +++++   +     +    +              V  ++ + 
Sbjct: 259 SVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ 318

Query: 220 DGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFA-----SCRFSPLNNEDYVLYIAA 274
           + ++++S         WD  S      L    + + +          P    +Y ++   
Sbjct: 319 NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP----EYNVFATG 374

Query: 275 ITDRGASIVTWNTTTWKRI 293
             D       W    +K+I
Sbjct: 375 SGDC--KARIWK---YKKI 388

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 56.7 bits (135), Expect = 1e-09
 Identities = 27/154 (17%), Positives = 54/154 (35%), Gaps = 12/154 (7%)

Query: 204 NESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPL 263
           +ES    +    +   D         R      DL +  +A    +  D  + S   +P 
Sbjct: 192 HESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPA 251

Query: 264 NNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGD 323
               +             + +++      I+   +      S NVS DG  + +G A GD
Sbjct: 252 KTRAF--------GAYNVLESFDLEKNASIKRVPLPHSY-YSVNVSTDGSTVWLGGALGD 302

Query: 324 ISIIDSSSLQVRTAVK---KAHLGIVTALAFSYD 354
           ++  D+ +L+ +  V     A + + +   F+ D
Sbjct: 303 LAAYDAETLEKKGQVDLPGNASMSLASVRLFTRD 336

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.7 bits (109), Expect = 3e-06
 Identities = 38/302 (12%), Positives = 73/302 (24%), Gaps = 22/302 (7%)

Query: 102 SDQPVAELRTDSD--LPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEK 159
                  +        P    + P G      +  S  L + D V    + R+ +   E+
Sbjct: 20  KMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE 79

Query: 160 VLSQLENV-----GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKD 214
            +  L        G+ LA+                                 EA   +  
Sbjct: 80  RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITM 139

Query: 215 LSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCR------FSPLNNEDY 268
           L+++ DG  L  LG        +  +     P+     E +A             +    
Sbjct: 140 LAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMA 199

Query: 269 VLYIAAITD--RGASIVTWNTTTWKRIRTKQVVREPVSS-----FNVSADGKLLAVGTAS 321
             +  A  D                 + T ++    V       F+ + +        A 
Sbjct: 200 TPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY 259

Query: 322 GDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL 381
             +   D         V         ++  S D   +        +     E  +K G +
Sbjct: 260 NVLESFDLEKNASIKRVP--LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQV 317

Query: 382 NL 383
           +L
Sbjct: 318 DL 319

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 3e-09
 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 172 ALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRG 231
           +L F   G  F +  ++  L  ++ P    I  +S+  +SV     S D K++V+     
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF-QSKESSSVLSCDISVDDKYIVTGSGDK 328

Query: 232 PGRVWDL 238
              V+++
Sbjct: 329 KATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 2e-07
 Identities = 11/85 (12%), Positives = 21/85 (24%), Gaps = 2/85 (2%)

Query: 285 WNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLG 344
                        +    V S   +  GK          ++   +         +     
Sbjct: 250 VLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS--IFQSKESS 307

Query: 345 IVTALAFSYDSRALVSASMDSSVRV 369
            V +   S D + +V+ S D    V
Sbjct: 308 SVLSCDISVDDKYIVTGSGDKKATV 332

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 8e-07
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 297 QVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSR 356
            +  +P  SF+V+ADG++  V     D  I        R      H  +V A+  S  +R
Sbjct: 6   AMGSKPAYSFHVTADGQMQPVPF-PPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTR 64

Query: 357 ALVSASMDSSVRV 369
            + +      V+V
Sbjct: 65  HVYTGG-KGCVKV 76

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 16/99 (16%)

Query: 168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSL 227
           GQ   + F  +  I      +              +N       V  ++ S   + + + 
Sbjct: 21  GQMQPVPFPPDALIGPGIPRHARQ-----------INTLNHGEVVCAVTISNPTRHVYT- 68

Query: 228 GNRGPGRVWDLASSAVATPLA----KENDELFASCRFSP 262
           G +G  +VWD++     +P++       D    SC+  P
Sbjct: 69  GGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 56.0 bits (133), Expect = 3e-09
 Identities = 19/182 (10%), Positives = 45/182 (24%), Gaps = 12/182 (6%)

Query: 209 HASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDEL-FASCRFSPLNNED 267
           ++     +F  D K L  L  R      D      +  +  +   +       +P     
Sbjct: 178 NSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVP 237

Query: 268 YVLYIAAITDRGASIVTWNTTTWKRIRTKQVVRE------PVSSFNVSADGKLLAVGTAS 321
             +   A       +   ++         +++          S                 
Sbjct: 238 RSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEK 297

Query: 322 GDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL 381
           G +   D  + +V           +T L  S D + ++    D  +    +E  +    +
Sbjct: 298 GVLLKYDVKTRKVTE-----VKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV 352

Query: 382 NL 383
             
Sbjct: 353 ET 354

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 39.1 bits (89), Expect = 7e-04
 Identities = 23/204 (11%), Positives = 39/204 (19%), Gaps = 16/204 (7%)

Query: 168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSL 227
           G  +A  F S G  F        +                    ++ +    D K     
Sbjct: 15  GDLIA--FVSRGQAFIQDVSGTYVLKVP------------EPLRIRYVRRGGDTKVAFIH 60

Query: 228 GNRGPG--RVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTW 285
           G R      ++D  +           +        +             +T    +    
Sbjct: 61  GTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPT 120

Query: 286 NTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGI 345
                +            S F                  +I        +          
Sbjct: 121 VIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSH 180

Query: 346 VTALAFSYDSRALVSASMDSSVRV 369
             A AF  DS+ L   S  S    
Sbjct: 181 DYAPAFDADSKNLYYLSYRSLDPS 204

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 54.0 bits (128), Expect = 1e-08
 Identities = 32/263 (12%), Positives = 67/263 (25%), Gaps = 34/263 (12%)

Query: 116 PYRMAIHPHGDGIICALQNSCRLFE-----------WDEVENTEIRRLGVKISEKVLSQL 164
            Y  AI P G  +   +  + RL +           +   +  E + +      + +  +
Sbjct: 91  MYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLM 150

Query: 165 ENVGQQLALTFDSEGTIF--AAGSENGNLRVFKWPS-----------LEIILNESEAHAS 211
                        +        G     L +  W                     E    
Sbjct: 151 RAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML 210

Query: 212 VKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLY 271
                F  D +   +          DL +    T    +  EL+ +   SP   +   +Y
Sbjct: 211 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSP--KDPNQIY 268

Query: 272 IAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSS 331
                     +  ++    K I+   +             G  L +G    D+++ +  +
Sbjct: 269 GVLNR-----LAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT 322

Query: 332 LQVRTAVK--KAHLGIVTALAFS 352
           L+    +K     +   T   F 
Sbjct: 323 LEKVKNIKLPGGDMSTTTPQVFI 345

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 48.2 bits (113), Expect = 8e-07
 Identities = 28/294 (9%), Positives = 62/294 (21%), Gaps = 29/294 (9%)

Query: 102 SDQPVAELRTDSDL-PYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKV 160
           SD             P    + P          +   ++  D           +      
Sbjct: 27  SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGE 86

Query: 161 LSQ------LENVGQQLALT-FDSEGTIFAAGSENGNLRVFKWPSLEII--LNESEAHAS 211
           + +      +   G+++  T   ++        +   L VF          +        
Sbjct: 87  VGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQ 146

Query: 212 VKDLSFSPDGKFLVSLGNR---------------GPGRVWDLASSAVATPLAKENDELFA 256
           V  +  + DG   V+  +                         S+               
Sbjct: 147 VYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHE 206

Query: 257 SCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK-RIRTKQVVREPVSSFNVSADGKLL 315
                 +          A  D     ++ +  T K   +    + E   +   S      
Sbjct: 207 FSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQ 266

Query: 316 AVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
                   ++  D    ++  A    H      +AF      L      + + V
Sbjct: 267 IY-GVLNRLAKYDLKQRKLIKAANLDHT--YYCVAFDKKGDKLYLGGTFNDLAV 317

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 46.7 bits (109), Expect = 2e-06
 Identities = 8/63 (12%), Positives = 20/63 (31%), Gaps = 1/63 (1%)

Query: 308 VSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYD-SRALVSASMDSS 366
           + A  + + V     ++ ++D +S  V  +              + D   A V  +    
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63

Query: 367 VRV 369
           +  
Sbjct: 64  IYG 66

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 40.1 bits (92), Expect = 4e-04
 Identities = 22/175 (12%), Positives = 46/175 (26%), Gaps = 24/175 (13%)

Query: 215 LSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAA 274
            +     ++++         V D+AS  V       +     +   +P N          
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNR-----TAYV 56

Query: 275 ITDRGASIVTWNTTTWKRIR------TKQVVREPVSSFNVSADGKLLAVGTASGD----- 323
           + +    I   +  T K             V   + SF +S DGK +             
Sbjct: 57  LNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH 116

Query: 324 -------ISIIDSSSLQVRTAVKKAH-LGIVTALAFSYDSRALVSASMDSSVRVT 370
                  + +  ++       V+       V  +  + D    V+      + V 
Sbjct: 117 YVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVK 171

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.3 bits (122), Expect = 9e-08
 Identities = 36/240 (15%), Positives = 71/240 (29%), Gaps = 22/240 (9%)

Query: 154 VKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVK 213
           ++ S KV    E+   Q    +D E        + G + +    + EI     +   +V 
Sbjct: 7   MRESWKVHVAPEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIK-TVLDTGYAVH 65

Query: 214 DLSFSPDGKFLVSLGNRGPGRVWDLAS---SAVAT-PLAKENDELFASCRFSPLNNEDYV 269
               S  G++L  +G  G   + DL     + VA   +  E   +  S      +     
Sbjct: 66  ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDK---- 121

Query: 270 LYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNV-----------SADGKLLAV- 317
            Y  A        V  +  T +  + +                       S       V 
Sbjct: 122 -YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN 180

Query: 318 GTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKK 377
              +G I ++D + L      + +    +         R  ++A+   +  V +   + K
Sbjct: 181 VKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK 240

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 1e-07
 Identities = 27/154 (17%), Positives = 51/154 (33%), Gaps = 13/154 (8%)

Query: 178 EGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWD 237
           +G    +GS + ++RV+   +   I   +   +    +    +   LVS       ++WD
Sbjct: 186 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWD 243

Query: 238 LASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQ 297
           + +      L   N    A        N      I +  D   ++  W+  T + IR   
Sbjct: 244 IKTGQCLQTLQGPNKHQSAVTCLQFNKN----FVITSSDDG--TVKLWDLKTGEFIRNLV 297

Query: 298 VVRE-----PVSSFNVSADGKLLAVGTASGDISI 326
            +        V     S    + AVG+ +G    
Sbjct: 298 TLESGGSGGVVWRIRASNTKLVCAVGSRNGTEET 331

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 10/69 (14%), Positives = 19/69 (27%), Gaps = 9/69 (13%)

Query: 179 GTIFAAGSENGNLRVFKWPSLEII-----LNESEAHASVKDLSFSPDGKFLVSLGNRGPG 233
                  S++G ++++   + E I     L    +   V  +  S            G  
Sbjct: 270 KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTE 329

Query: 234 ----RVWDL 238
                V D 
Sbjct: 330 ETKLLVLDF 338

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.2 bits (110), Expect = 2e-06
 Identities = 11/72 (15%), Positives = 19/72 (26%), Gaps = 2/72 (2%)

Query: 297 QVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSR 356
           +  R        +  G  +        +  +   SL   T +   H    T    S    
Sbjct: 14  RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTD-TEIYTEHSHQTTVAKTSPSGY 71

Query: 357 ALVSASMDSSVR 368
              S  +  +VR
Sbjct: 72  YCASGDVHGNVR 83

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.9 bits (104), Expect = 1e-05
 Identities = 17/86 (19%), Positives = 28/86 (32%)

Query: 284 TWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHL 343
           T                  V     S DG  +A  +A   I I + ++L+V   +     
Sbjct: 222 TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR 281

Query: 344 GIVTALAFSYDSRALVSASMDSSVRV 369
                L   +  +ALVS S +  +  
Sbjct: 282 IEDQQLGIIWTKQALVSISANGFINF 307

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.9 bits (91), Expect = 3e-04
 Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 174 TFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKD--LSFSPDGKFLVSLGNRG 231
           T+  +GT  A+ S +  ++++   +L++          ++D  L      + LVS+   G
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVE-KTIPVGTRIEDQQLGIIWTKQALVSISANG 303

Query: 232 PGRVWDL 238
                + 
Sbjct: 304 FINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.4 bits (82), Expect = 0.004
 Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 1/69 (1%)

Query: 168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSL 227
           G  + L     G      +   ++      SL      +E          SP G +  S 
Sbjct: 18  GTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASG 76

Query: 228 GNRGPGRVW 236
              G  R+W
Sbjct: 77  DVHGNVRIW 85

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.9 bits (107), Expect = 5e-06
 Identities = 38/292 (13%), Positives = 77/292 (26%), Gaps = 29/292 (9%)

Query: 68  RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSL---SDQPVAELRTDSDLPYRMAIHPH 124
            ++    +        G R   +   FD  +       + P A        P+  ++ P 
Sbjct: 58  GSFIAHASTVFSRIARGERTDYV-EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPD 116

Query: 125 GDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAA 184
           G  ++    +        ++E    +R    +       +             +G++   
Sbjct: 117 GKTLLFYQFSPAPAVGVVDLEGKAFKR---MLDVPDCYHIFPTAPDTFFMHCRDGSLAKV 173

Query: 185 GSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVA 244
                         +       E    +   ++S     LV     G     DL+S    
Sbjct: 174 AFGTEGTPEITHTEV----FHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAK 229

Query: 245 TPLAKENDE---------------LFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT 289
              A E                  +        +                  +V  +  T
Sbjct: 230 FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT 289

Query: 290 WKRIRTKQVVREPVSSFNVSADGK--LLAVGTASGDISIIDSSSLQVRTAVK 339
            +R+   ++    + S NVS D K  L A+ T    + I D+ S +   +V 
Sbjct: 290 GERLAKFEMGH-EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN 340

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.6 bits (103), Expect = 1e-05
 Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 1/85 (1%)

Query: 285 WNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLG 344
                  +I           +     +  L+A G+   +I I              AH  
Sbjct: 200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD 259

Query: 345 IVTALAFSYDSRALVSASMDSSVRV 369
            V  L +   S  LVS+  D+ ++ 
Sbjct: 260 GVNNLLWETPST-LVSSGADACIKR 283

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.0 bits (99), Expect = 4e-05
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 172 ALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAH-ASVKDLSFSPDGKFLVSLGNR 230
           A   + E  + A GS + N+ ++       I+    AH   V +L +      LVS G  
Sbjct: 220 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGAD 278

Query: 231 GPGRVWD 237
              + W+
Sbjct: 279 ACIKRWN 285

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.4 bits (101), Expect = 3e-05
 Identities = 25/293 (8%), Positives = 69/293 (23%), Gaps = 39/293 (13%)

Query: 70  YYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLS---DQPVAELRTDSDLPYRMAIHPHGD 126
            + + +        G R   +   FD  +       + P A   +     + +       
Sbjct: 78  DFALASTSFARSAKGKRTDYV-EVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA 136

Query: 127 GIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGS 186
            ++  L  S           ++ +                                  GS
Sbjct: 137 CLLFFLFGSSAAAGLSVPGASDDQLTKSASC--------------FHIHPGAAATHYLGS 182

Query: 187 ENGNLRVFKWPSLEIILNESEAHA------SVKDLSFSPDGKFLVSLGNRGPGRVWDLAS 240
              +L      +         A        S +    +  G  + ++ +         A 
Sbjct: 183 CPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAG 242

Query: 241 SAVATPLAKENDELFASCR---------FSPLNNEDYVLY---IAAITDRGASIVTWNTT 288
           + +   +        A                 +   +L      +      +  +   +
Sbjct: 243 ATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS 302

Query: 289 TWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGD--ISIIDSSSLQVRTAVK 339
             +         +   +   + DG       ++G   + I D++S Q +++V+
Sbjct: 303 VGQTSGPISNGHDS-DAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.5 bits (98), Expect = 5e-05
 Identities = 8/44 (18%), Positives = 19/44 (43%)

Query: 338 VKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL 381
           +++A    ++ +        L+  S D S+ V   + + K+  L
Sbjct: 6   IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL 49

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 8/71 (11%), Positives = 27/71 (38%), Gaps = 2/71 (2%)

Query: 291 KRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISI--IDSSSLQVRTAVKKAHLGIVTA 348
           + ++ +Q  ++ +S   +     LL + +  G +++   D  +  V       +   +  
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 349 LAFSYDSRALV 359
             F  ++   +
Sbjct: 62  CNFIDNTDLQI 72

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 7/142 (4%), Positives = 32/142 (22%), Gaps = 9/142 (6%)

Query: 119 MAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLEN----VGQQLALT 174
           +A+ P             R+      +  +      + + +                ++ 
Sbjct: 199 VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIE 258

Query: 175 FDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGR 234
           F            +G +  +   + +  +           +  +     L    +    +
Sbjct: 259 FSPRHKFLYTAGSDGIISCWNLQTRKK-IKNFAKFNEDSVVKIACSDNILCLATSDDTFK 317

Query: 235 VWDLASSAVATPLAKENDELFA 256
                 +A+   +      ++ 
Sbjct: 318 TN----AAIDQTIELNASSIYI 335

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 11/64 (17%), Positives = 18/64 (28%), Gaps = 3/64 (4%)

Query: 202 ILNESEAHA-SVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAK--ENDELFASC 258
           I+   +A    + D+   P    L+     G   V+     A    L +          C
Sbjct: 3   IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC 62

Query: 259 RFSP 262
            F  
Sbjct: 63  NFID 66

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 9/62 (14%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 172 ALTFDSEGTIFAAGSENGNLRVFKW--PSLEIILNESEAH-ASVKDLSFSPDGKFLVSLG 228
            +      ++    S +G+L V+K+   +  + L +S  +   +   +F  +    + +G
Sbjct: 16  DIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVG 75

Query: 229 NR 230
             
Sbjct: 76  TV 77

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 14/95 (14%), Positives = 30/95 (31%), Gaps = 2/95 (2%)

Query: 285 WNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLG 344
           +     +       +  PV+S   S   K L    + G IS  +  + +      K +  
Sbjct: 236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE- 294

Query: 345 IVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSG 379
             + +  +     L  A+ D + +     D+    
Sbjct: 295 -DSVVKIACSDNILCLATSDDTFKTNAAIDQTIEL 328

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 41.5 bits (96), Expect = 1e-04
 Identities = 32/229 (13%), Positives = 67/229 (29%), Gaps = 10/229 (4%)

Query: 140 EWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSL 199
           EW   E        ++ S KVL + E+  ++     D          + G + +    S 
Sbjct: 1   EWGMPE--------MRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSK 52

Query: 200 EIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCR 259
           +I+    +   +V     S  G++L+ +G      + DL +         +      S  
Sbjct: 53  KIV-KVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVE 111

Query: 260 FSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGT 319
            S     +   Y  A           +  T +  +        V +     + ++ A+  
Sbjct: 112 SSKFKGYE-DRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIA 170

Query: 320 ASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVR 368
           +      I +     +  +          +     +  L     DSS R
Sbjct: 171 SHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHR 219

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.1 bits (94), Expect = 1e-04
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 338 VKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
           V+  H   +TAL+ S D + L SA  +  +  
Sbjct: 7   VRYGHNKAITALSSSADGKTLFSADAEGHINS 38

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.1 bits (94), Expect = 1e-04
 Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 182 FAAGSENGNLRVFKW--PSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDL 238
            A GS + ++ V+    PS   I+ +     S  +     +   +VS G     + W++
Sbjct: 239 LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.0 bits (91), Expect = 3e-04
 Identities = 13/54 (24%), Positives = 24/54 (44%)

Query: 300 REPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSY 353
            + +++ + SADGK L    A G I+  D S+          H  ++T +  + 
Sbjct: 12  NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS 65

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.0 bits (91), Expect = 3e-04
 Identities = 11/51 (21%), Positives = 19/51 (37%)

Query: 210 ASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRF 260
            ++  LS S DGK L S    G    WD+++          +  +    + 
Sbjct: 13  KAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 181 IFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFL-VSLGNRGPGRVWDLA 239
            + A SE+ N+ V    S ++        ++      SPDG  + V+  +     + D A
Sbjct: 4   AYIANSESDNISVIDVTSNKVT-ATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62

Query: 240 S 240
           +
Sbjct: 63  T 63

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 39.9 bits (91), Expect = 4e-04
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 270 LYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAV-GTASGDISIID 328
            YIA       +I   + T+ K   T  V   P+    +S DG  + V    S D+SIID
Sbjct: 4   AYIANSESD--NISVIDVTSNKVTATIPVGSNPM-GAVISPDGTKVYVANAHSNDVSIID 60

Query: 329 SSSLQV 334
           +++  V
Sbjct: 61  TATNNV 66

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 36.8 bits (83), Expect = 0.003
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 207 EAHASVKDLSFSPDGKFL-VSLGNRGPGRVWDLASSAV 243
                   ++ +PDGK + V+L       V D A++ +
Sbjct: 241 PVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTI 278

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 36/250 (14%), Positives = 60/250 (24%), Gaps = 58/250 (23%)

Query: 178 EGTIFAAGSENGNLRVFKWPSLEII----------------LNES--------------- 206
           E   F +G   G +RV   PS+  +                 NES               
Sbjct: 10  EYYGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDC 69

Query: 207 -EAHASVKDLSFSPDGKFLVSLGNRGPGRV--WDLASSAVATPLAKENDELFASCRFSPL 263
              H S+ D     DGK+L    ++   RV    L            N +     R   +
Sbjct: 70  HHPHISMTD--GRYDGKYLFI-NDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKV 126

Query: 264 NNEDYVL-------------YIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSA 310
              +YV                 ++ +        +  T        V      + +   
Sbjct: 127 PKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNL-DNTDADY 185

Query: 311 DGKLLAVGT-ASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV 369
            GK        S     +  +    R  V      +    A                  V
Sbjct: 186 TGKYATSTCYNSERAVDLAGTMRNDRDWVV--VFNVERIAAAVKAGNFKTIGDSK----V 239

Query: 370 TVIEDKKKSG 379
            V++ + +S 
Sbjct: 240 PVVDGRGESE 249

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 22/97 (22%), Positives = 34/97 (35%), Gaps = 12/97 (12%)

Query: 281 SIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVK- 339
           +I  W+      +R  +   E V       D K +  G   G I + D  +     A   
Sbjct: 199 TIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAG 256

Query: 340 -------KAHLGIVTALAFSYDSRALVSASMDSSVRV 369
                    H G V  L F  D   +VS+S D ++ +
Sbjct: 257 TLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILI 291

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (90), Expect = 5e-04
 Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 5/93 (5%)

Query: 297 QVVREPVSSFNVSADGKLLAVGTA-SGDISIID--SSSLQVRTAVKKAHLGIVTALAFS- 352
              R   +  +       +A     S  +  +D   S +            +VT + FS 
Sbjct: 14  STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSP 73

Query: 353 -YDSRALVSASMDSSVRVTVIEDKKKSGGLNLW 384
              S+ L S      V V      K+S  + + 
Sbjct: 74  IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVN 106

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 0.003
 Identities = 9/64 (14%), Positives = 23/64 (35%), Gaps = 3/64 (4%)

Query: 178 EGTIFAAGSENGNLRVFKWPSLEII--LNESEAHASVKDLSFSPDG-KFLVSLGNRGPGR 234
           +   FA    +  +RV+   + + +      +     + +     G   ++SL   G   
Sbjct: 262 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLN 321

Query: 235 VWDL 238
            ++L
Sbjct: 322 FYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 0.004
 Identities = 28/143 (19%), Positives = 46/143 (32%), Gaps = 17/143 (11%)

Query: 198 SLEIIL--NESEAHASVKDLSFSPDGKFLVS-LGNRGPGRVWDLASSAVA--TPLAKEND 252
           SL+ I+    S        LS+ P    +    G     R  D   S V           
Sbjct: 4   SLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGS 63

Query: 253 ELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRT--------KQVVREPVS 304
            +  + +FSP+    Y+       D    ++ W  T  K   +         QV+  P+S
Sbjct: 64  SVVTTVKFSPIKGSQYL----CSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPIS 119

Query: 305 SFNVSADGKLLAVGTASGDISII 327
             +   +G+ L V     D   +
Sbjct: 120 DISWDFEGRRLCVVGEGRDNFGV 142

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (90), Expect = 6e-04
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 308 VSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASM 363
           +  +   +  G     I + DS + +    +   H G V AL +++    LVS S 
Sbjct: 19  LQFEDNYVITGADDKMIRVYDSINKKFLLQLS-GHDGGVWALKYAHGGI-LVSGST 72

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 9e-04
 Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 3/70 (4%)

Query: 173 LTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHAS-VKDLSFSPDGKFLVSLGNRG 231
            TF     I  +GSEN    ++   S +++       A  +  ++F      + ++   G
Sbjct: 288 TTFYVSDNILVSGSEN-QFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAVEKDG 345

Query: 232 PGRVWDLASS 241
              +  L  S
Sbjct: 346 QSFLEILDFS 355

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.2 bits (84), Expect = 0.003
 Identities = 9/52 (17%), Positives = 20/52 (38%)

Query: 175 FDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVS 226
              E      G+++  +RV+   + + +L  S     V  L ++  G  +  
Sbjct: 19  LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSG 70

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 9e-04
 Identities = 24/207 (11%), Positives = 48/207 (23%), Gaps = 46/207 (22%)

Query: 204 NESEAH-ASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELF------- 255
           N  +AH A +  +S      F VS    G  +VWD        P  K             
Sbjct: 8   NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHH 65

Query: 256 -ASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADG-- 312
               +    +  +  L           ++ +  T     +     +  +   ++      
Sbjct: 66  VDVLQAIERDAFELCLVATTSFSG--DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW 123

Query: 313 -------------KLLAVGTASGDISIID-----------------SSSLQVRTAVKKAH 342
                          L      G   I                   +  LQ         
Sbjct: 124 ALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTP 183

Query: 343 LGIVTALAFSYDSRALVSASMDSSVRV 369
               T++  S     + +   + +V++
Sbjct: 184 SQFATSVDISERGL-IATGFNNGTVQI 209

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 180 TIFAAGSENGNLRVFKWPS---LEIILNESEAHASVKDLSFSPDGKFL-VSLGNRGPGRV 235
           T++ A  E+  + V+       L +     +    V+ +  SPD ++L V +        
Sbjct: 5   TVYIASPESQQIHVWNLNHEGALTLT-QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLA 63

Query: 236 WDLAS 240
           + +A 
Sbjct: 64  YRIAP 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	406
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.96
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.94
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.94
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.94
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.93
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.9
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.89
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.89
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.87
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.86
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.86
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.86
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.79
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.74
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.74
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.73
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.71
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.69
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.62
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.59
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.55
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.52
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.51
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.47
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.38
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.36
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.36
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.34
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.31
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.16
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.15
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.13
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.12
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.04
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.01
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.0
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.98
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.97
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.96
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.94
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.92
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.92
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.76
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.49
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.42
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.21
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.2
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.11
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.0
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.0
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.85
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.79
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.65
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.5
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.45
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.32
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.32
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.09
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.02
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.99
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.98
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.85
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.75
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.59
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.01
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	95.86
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.81
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	95.77
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.66
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	93.97
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	92.79
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	91.64
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	91.4
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	90.79
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	90.41

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.5e-38  Score=280.14  Aligned_cols=271  Identities=14%  Similarity=0.144  Sum_probs=224.1

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCC-ccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEeccc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNS-LSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVE  145 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~  145 (406)
                      +++++++++ .|          .+..|+..... ..........+|.+.|.+++|+|++++|++++ |+.+++|++....
T Consensus        62 ~g~~latg~-dg----------~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~  130 (337)
T d1gxra_          62 PTRHVYTGG-KG----------CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT  130 (337)
T ss_dssp             SSSEEEEEC-BS----------EEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-
T ss_pred             CCCEEEEEE-CC----------EEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccc
Confidence            777777642 11          34455554322 12223445568999999999999999999987 8889998776543


Q ss_pred             ccceeecceeccceeeeccc-ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEE
Q 015490          146 NTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFL  224 (406)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  224 (406)
                      ..            ....+. +...+.+++|+|++.++++++.|+.|++|++.+++.......|...|.+++|++++..+
T Consensus       131 ~~------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~  198 (337)
T d1gxra_         131 PR------------IKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKL  198 (337)
T ss_dssp             -E------------EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             cc------------cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            22            222222 34678999999999999999999999999999999888888888899999999999999


Q ss_pred             EEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeE
Q 015490          225 VSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVS  304 (406)
Q Consensus       225 ~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~  304 (406)
                      ++++.|+.+++||+++++.+..+.  +...+.+++|+|+++.      +++++.++.+++||+++++.. ....|...|.
T Consensus       199 ~~~~~d~~v~i~d~~~~~~~~~~~--~~~~i~~l~~~~~~~~------l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~  269 (337)
T d1gxra_         199 WTGGLDNTVRSWDLREGRQLQQHD--FTSQIFSLGYCPTGEW------LAVGMESSNVEVLHVNKPDKY-QLHLHESCVL  269 (337)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECTTSSE------EEEEETTSCEEEEETTSSCEE-EECCCSSCEE
T ss_pred             ccccccccccccccccceeecccc--cccceEEEEEcccccc------cceeccccccccccccccccc-cccccccccc
Confidence            999999999999999999887664  3456889999999873      456678999999999988765 4556788999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEe
Q 015490          305 SFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVI  372 (406)
Q Consensus       305 ~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~  372 (406)
                      +++|+|++++|++++.||.|++||+.+++.+..+.  |...|.+++|+|++++|++|+.||+|+|||+
T Consensus       270 ~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             eEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc--CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            99999999999999999999999999999988874  8899999999999999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.7e-37  Score=274.81  Aligned_cols=260  Identities=17%  Similarity=0.176  Sum_probs=210.5

Q ss_pred             EEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccC
Q 015490           91 LSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVG  168 (406)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  168 (406)
                      +..++...    ......+.+|.+.|++++|+|+|++|++|+ |+.++||++.......            ...+. +..
T Consensus        40 v~i~~~~~----~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~------------~~~~~~~~~  103 (311)
T d1nr0a1          40 VYTVPVGS----LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL------------KTTIPVFSG  103 (311)
T ss_dssp             EEEEETTC----SSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE------------EEEEECSSS
T ss_pred             EEEEECCC----CceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccc------------ccccccccC
Confidence            45555544    246667899999999999999999999987 8888888765432111            11122 457


Q ss_pred             cEEEEEECCCCCEEEEeeC--CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCE-EEEEeCCCCEEEEEcCCCeeee
Q 015490          169 QQLALTFDSEGTIFAAGSE--NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKF-LVSLGNRGPGRVWDLASSAVAT  245 (406)
Q Consensus       169 ~v~~~~~s~~g~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~s~s~d~~i~iwd~~~~~~~~  245 (406)
                      .|.+++|+|++++|++++.  +..+++|++++++....+..|...|++++|+|++++ |++++.|+.|++||+++++...
T Consensus       104 ~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~  183 (311)
T d1nr0a1         104 PVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS  183 (311)
T ss_dssp             CEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccccccccccccc
Confidence            8999999999999999875  456999999999988888888889999999999885 8889999999999999998888


Q ss_pred             ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEee-------ecCCCeEEEEEcCCCCEEEEE
Q 015490          246 PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQ-------VVREPVSSFNVSADGKLLAVG  318 (406)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~-------~~~~~i~~~~~sp~~~~l~~~  318 (406)
                      .+..+ ...+.++.|+|+++.      +++++.|+.|++||.++++....+.       +|...|.+++|+|++++|++|
T Consensus       184 ~~~~~-~~~i~~v~~~p~~~~------l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tg  256 (311)
T d1nr0a1         184 TFGEH-TKFVHSVRYNPDGSL------FASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA  256 (311)
T ss_dssp             EECCC-SSCEEEEEECTTSSE------EEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEE
T ss_pred             ccccc-cccccccccCccccc------cccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEE
Confidence            77654 556899999999883      4566789999999999988877664       356789999999999999999


Q ss_pred             eCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490          319 TASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       319 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~  373 (406)
                      +.||.|+|||+++++.+..+...+......+.+.+++.+|++++.||.|++||.+
T Consensus       257 s~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         257 SADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             eCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            9999999999999999988863222223333444456689999999999999974

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-36  Score=268.59  Aligned_cols=275  Identities=15%  Similarity=0.188  Sum_probs=228.2

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVEN  146 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~  146 (406)
                      +++++++++..|          .+..|+...    .+.+.++.+|.+.|.+++|+|++.+++++. ++.+.+|....  .
T Consensus        28 ~~~~l~s~s~Dg----------~i~iWd~~~----~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~   91 (317)
T d1vyhc1          28 VFSVMVSASEDA----------TIKVWDYET----GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG--F   91 (317)
T ss_dssp             SSSEEEEEESSS----------CEEEEETTT----CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS--S
T ss_pred             CCCEEEEEeCCC----------eEEEEECCC----CCEEEEEeCCCCcEEEEeeecccccccccccccccccccccc--c
Confidence            566777654332          344555544    346788999999999999999999999887 55555544332  1


Q ss_pred             cceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEE
Q 015490          147 TEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVS  226 (406)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s  226 (406)
                      ..           ......+...+.++.|+++++.+++++.|+.+++||+++++....+..+...+.+++|++++++|++
T Consensus        92 ~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  160 (317)
T d1vyhc1          92 EC-----------IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIAS  160 (317)
T ss_dssp             CE-----------EECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             cc-----------ccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEE
Confidence            11           1112234578899999999999999999999999999999999888888889999999999999999


Q ss_pred             EeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceE--------------EEEEEEcCCCcEEEEEeCCCceE
Q 015490          227 LGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYV--------------LYIAAITDRGASIVTWNTTTWKR  292 (406)
Q Consensus       227 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------l~~~~~~~~~~~i~~~d~~~~~~  292 (406)
                      ++.|+.+++|++.+++....+..+ ...+.++.|+|+......              -..+.+++.|+.|++||.+++++
T Consensus       161 ~~~d~~v~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~  239 (317)
T d1vyhc1         161 CSNDQTVRVWVVATKECKAELREH-RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC  239 (317)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCC-SSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEE
T ss_pred             EeCCCeEEEEeeccceeeEEEecC-CCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcE
Confidence            999999999999999988887754 445778888886543100              01345567899999999999999


Q ss_pred             EEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEE
Q 015490          293 IRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTV  371 (406)
Q Consensus       293 ~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~  371 (406)
                      +..+..|...|.+++|+|++++|++|+.||.|++||+.+++.+..+. +|...|++++|+|++++|++|+.||+|+|||
T Consensus       240 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         240 LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN-AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE-CCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            99999999999999999999999999999999999999999999986 8999999999999999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.2e-37  Score=275.74  Aligned_cols=251  Identities=20%  Similarity=0.220  Sum_probs=212.2

Q ss_pred             CCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeE
Q 015490          112 DSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNL  191 (406)
Q Consensus       112 h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i  191 (406)
                      +.+.+..++++|+|+.|+.+.++.+.+|+++  +......+           ..|...|++++|+|+|++|++|+.||+|
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~~~~v~i~~~~--~~~~~~~~-----------~~H~~~v~~~~~sp~g~~latg~~dg~i   82 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCNGTSVYTVPVG--SLTDTEIY-----------TEHSHQTTVAKTSPSGYYCASGDVHGNV   82 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEETTEEEEEETT--CSSCCEEE-----------CCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             CCCCeEEEEEcCCCCEEEEEeCCEEEEEECC--CCceeEEE-----------cCCCCCEEEEEEeCCCCeEeccccCceE
Confidence            4456778999999999999887777666554  22221111           1355899999999999999999999999


Q ss_pred             EEEeCCCcceE--eeeeccCCceeEEEEccCCCEEEEEeC--CCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCc
Q 015490          192 RVFKWPSLEII--LNESEAHASVKDLSFSPDGKFLVSLGN--RGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNED  267 (406)
Q Consensus       192 ~vwd~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (406)
                      ++||+.+++..  ..+..|...|.+++|+|++++|++++.  +..+++|++++++....+..+ ...+.+++|+|+++. 
T Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h-~~~v~~v~~~~~~~~-  160 (311)
T d1nr0a1          83 RIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQ-ARAMNSVDFKPSRPF-  160 (311)
T ss_dssp             EEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCC-SSCEEEEEECSSSSC-
T ss_pred             eeeeeeccccccccccccccCcccccccccccccccccccccccccccccccccccccccccc-cccccccccccccee-
Confidence            99999887643  446667789999999999999999885  456999999999888887765 456899999999885 


Q ss_pred             eEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEee------cc
Q 015490          268 YVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVK------KA  341 (406)
Q Consensus       268 ~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~  341 (406)
                          ++++++.|+.|++||+++++....+..|...|.++.|+|+++++++++.|+.|++||+.++.....+.      .+
T Consensus       161 ----~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~  236 (311)
T d1nr0a1         161 ----RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA  236 (311)
T ss_dssp             ----EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCS
T ss_pred             ----eecccccccccccccccccccccccccccccccccccCcccccccccccccccccccccccccccccccccccccc
Confidence                55677889999999999999999999999999999999999999999999999999999888776653      25


Q ss_pred             cccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490          342 HLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       342 ~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~  381 (406)
                      |...|++++|+|++++|++|+.||+|+|||+++++.+..+
T Consensus       237 h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l  276 (311)
T d1nr0a1         237 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI  276 (311)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            8889999999999999999999999999999998876554

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-36  Score=268.97  Aligned_cols=255  Identities=15%  Similarity=0.209  Sum_probs=213.9

Q ss_pred             eeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEe
Q 015490          106 VAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAG  185 (406)
Q Consensus       106 ~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  185 (406)
                      +..+ .|...|.+++|+|+|++|++|+++.++||++......  ..      ........|.+.|.+++|+|++++|++|
T Consensus        45 ~~~~-~H~~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~--~~------~~~~~~~~h~~~I~~v~~s~dg~~l~s~  115 (337)
T d1gxra_          45 INTL-NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNK--SP------VSQLDCLNRDNYIRSCKLLPDGCTLIVG  115 (337)
T ss_dssp             EEEE-CCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCC--SC------SEEEECSCTTSBEEEEEECTTSSEEEEE
T ss_pred             EEEC-CCCCcEEEEEECCCCCEEEEEECCEEEEEEccCCccc--ce------eEEeeecCCCCcEEEEEEcCCCCEEEEe
Confidence            3344 7999999999999999999998888888876543211  11      1112223456789999999999999999


Q ss_pred             eCCCeEEEEeCCCc--ceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcC
Q 015490          186 SENGNLRVFKWPSL--EIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPL  263 (406)
Q Consensus       186 ~~dg~i~vwd~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (406)
                      +.||.|++||+...  +....+..|...+.+++|+|++.++++++.|+.+++||+.+++.......+ ...+.+++|+++
T Consensus       116 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~-~~~v~~l~~s~~  194 (337)
T d1gxra_         116 GEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH-TDGASCIDISND  194 (337)
T ss_dssp             ESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECTT
T ss_pred             ecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc
Confidence            99999999998744  445566677779999999999999999999999999999999887776654 456889999999


Q ss_pred             CCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccc
Q 015490          264 NNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHL  343 (406)
Q Consensus       264 ~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  343 (406)
                      +..      ++.++.++.+++||+++++.+..+. +...|.+++|+|++++|++++.|+.+++||+++++.....  .|.
T Consensus       195 ~~~------~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~  265 (337)
T d1gxra_         195 GTK------LWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH--LHE  265 (337)
T ss_dssp             SSE------EEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEEC--CCS
T ss_pred             ccc------cccccccccccccccccceeecccc-cccceEEEEEcccccccceecccccccccccccccccccc--ccc
Confidence            873      4556779999999999999887765 6688999999999999999999999999999988876554  699


Q ss_pred             cceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCC
Q 015490          344 GIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSG  379 (406)
Q Consensus       344 ~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~  379 (406)
                      ..|++++|+|++++|++++.||.|++||+.+++.+.
T Consensus       266 ~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~  301 (337)
T d1gxra_         266 SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF  301 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             cccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEE
Confidence            999999999999999999999999999999887653

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.9e-36  Score=266.02  Aligned_cols=246  Identities=16%  Similarity=0.210  Sum_probs=205.7

Q ss_pred             cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCCE
Q 015490          104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTI  181 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~  181 (406)
                      +..++++||.+.|++++|+|++.+|++|+ |+.++||++.  +++            .+..+. +...|.+++|+|++++
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~--~~~------------~~~~~~~~~~~v~~v~~~~~~~~  111 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSY--TTN------------KVHAIPLRSSWVMTCAYAPSGNY  111 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT--TTE------------EEEEEECSCSCEEEEEECTTSSE
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecc--cce------------eEEEEecccccEEeeEeecccee
Confidence            46678999999999999999999999998 8888887654  222            233333 4578999999999999


Q ss_pred             EEEeeCCCeEEEEeCCCcc----eEe-----------------------------------------eeeccCCceeEEE
Q 015490          182 FAAGSENGNLRVFKWPSLE----IIL-----------------------------------------NESEAHASVKDLS  216 (406)
Q Consensus       182 l~~~~~dg~i~vwd~~~~~----~~~-----------------------------------------~~~~~~~~i~~~~  216 (406)
                      +++|+.|+.+++|+.....    ...                                         ....+...+....
T Consensus       112 l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (340)
T d1tbga_         112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLS  191 (340)
T ss_dssp             EEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred             eeeecccceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeec
Confidence            9999999999999964321    000                                         1111223566777


Q ss_pred             EccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEe
Q 015490          217 FSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTK  296 (406)
Q Consensus       217 ~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~  296 (406)
                      +.+.+.++++++.|+.|++||+++++....+..+ ...+.+++|+|+++      .+++++.|+.|++||++.......+
T Consensus       192 ~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h-~~~i~~v~~~p~~~------~l~s~s~d~~i~~~~~~~~~~~~~~  264 (340)
T d1tbga_         192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH-ESDINAICFFPNGN------AFATGSDDATCRLFDLRADQELMTY  264 (340)
T ss_dssp             ECTTSSEEEEEETTTEEEEEETTTTEEEEEECCC-SSCEEEEEECTTSS------EEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             cccccceeEEeecCceEEEEECCCCcEEEEEeCC-CCCeEEEEECCCCC------EEEEEeCCCeEEEEeeccccccccc
Confidence            8888899999999999999999999999888764 55789999999987      3456678999999999998887766


Q ss_pred             e--ecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEE
Q 015490          297 Q--VVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTV  371 (406)
Q Consensus       297 ~--~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~  371 (406)
                      .  .+...+.+++|+|++++|++|+.||.|++||+.+++.+..+. +|.++|++++|+|++++|+||+.||+|+|||
T Consensus       265 ~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         265 SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA-GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            4  344679999999999999999999999999999999999996 8999999999999999999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-35  Score=270.97  Aligned_cols=260  Identities=15%  Similarity=0.207  Sum_probs=195.9

Q ss_pred             eeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceecc-------ceeeecccccCcEEEEEECCC
Q 015490          106 VAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKIS-------EKVLSQLENVGQQLALTFDSE  178 (406)
Q Consensus       106 ~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~s~~  178 (406)
                      +....+|++.|+|++|+|||++|++|+|+.++||++.  +++....+.....       ........+...|.+++|+|+
T Consensus        55 l~~~~~H~~~V~~l~fs~dg~~lasg~d~~i~iW~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~  132 (388)
T d1erja_          55 LHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVS--DGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD  132 (388)
T ss_dssp             EEEEEECSSCCCEEEECTTSSEEEEECBSCEEEEETT--TCCEEEEECC-----------------CCCCBEEEEEECTT
T ss_pred             eEeeCCCCCcEEEEEECCCCCEEEEEeCCeEEEEEec--ccceEeeecccccccccccccccccccCCCCCEEEEEECCC
Confidence            3344579999999999999999999889988887654  3443333322100       011112234467999999999


Q ss_pred             CCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCC------------------
Q 015490          179 GTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLAS------------------  240 (406)
Q Consensus       179 g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~------------------  240 (406)
                      +++|++|+.||.|++||...++......+|...|.+++|++++..+++++.++.+++||.++                  
T Consensus       133 ~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~  212 (388)
T d1erja_         133 GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAV  212 (388)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred             CCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccc
Confidence            99999999999999999999988888887877888888877766666666666666665543                  


Q ss_pred             ------------------------Ceeeeeccc------CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc
Q 015490          241 ------------------------SAVATPLAK------ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW  290 (406)
Q Consensus       241 ------------------------~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~  290 (406)
                                              +.....+..      .+...+.+++|+|+++.      +++++.|+.|++||++++
T Consensus       213 ~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~------l~s~~~d~~i~iwd~~~~  286 (388)
T d1erja_         213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS------VVSGSLDRSVKLWNLQNA  286 (388)
T ss_dssp             CSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE------EEEEETTSEEEEEEC---
T ss_pred             cCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCE------EEEEECCCcEEEEeccCC
Confidence                                    333322211      23456889999999873      456678999999999764


Q ss_pred             eE------------EEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEE------c
Q 015490          291 KR------------IRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAF------S  352 (406)
Q Consensus       291 ~~------------~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~------s  352 (406)
                      ..            ......|...|.+++|+|++++|++|+.||.|++||+++++.+..+. +|.+.|.++++      +
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~-~H~~~V~~~~~~~~~~~s  365 (388)
T d1erja_         287 NNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ-GHRNSVISVAVANGSSLG  365 (388)
T ss_dssp             ------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSCTTC
T ss_pred             ccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEe-CCCCCEEEEEEecCcccC
Confidence            42            34455677889999999999999999999999999999999999996 89999999975      5


Q ss_pred             CCCCeEEEEECCCcEEEEEecC
Q 015490          353 YDSRALVSASMDSSVRVTVIED  374 (406)
Q Consensus       353 p~~~~l~s~s~dg~i~iw~~~~  374 (406)
                      |++.+|+||+.||+|+||+++.
T Consensus       366 pd~~~l~s~s~Dg~I~iW~~~k  387 (388)
T d1erja_         366 PEYNVFATGSGDCKARIWKYKK  387 (388)
T ss_dssp             TTCEEEEEEETTSEEEEEEEEE
T ss_pred             CCCCEEEEEeCCCEEEEEeeee
Confidence            6899999999999999999863

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.4e-36  Score=270.67  Aligned_cols=278  Identities=11%  Similarity=0.104  Sum_probs=208.3

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVEN  146 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~  146 (406)
                      +++++++++..+        .+.++..+  .+.  ...+..+++|.+.|.+++|+|++++|++++ |+.++||+++....
T Consensus        18 dg~~la~~~~~~--------~i~iw~~~--~~~--~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~   85 (371)
T d1k8kc_          18 DRTQIAICPNNH--------EVHIYEKS--GNK--WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW   85 (371)
T ss_dssp             TSSEEEEECSSS--------EEEEEEEE--TTE--EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred             CCCEEEEEeCCC--------EEEEEECC--CCC--EEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence            677777764322        34454443  322  245778899999999999999999999987 89999998875322


Q ss_pred             cceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceE----eeeeccCCceeEEEEccCCC
Q 015490          147 TEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEII----LNESEAHASVKDLSFSPDGK  222 (406)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~~~~i~~~~~s~~~~  222 (406)
                      ..           ......+...|.+++|+|+++.|++|+.|++|++|+++.....    .....+...|.+++|+|+++
T Consensus        86 ~~-----------~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  154 (371)
T d1k8kc_          86 KP-----------TLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV  154 (371)
T ss_dssp             EE-----------EEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS
T ss_pred             cc-----------ccccccccccccccccccccccceeecccCcceeeeeeccccccccccccccccccccccccccccc
Confidence            11           1112235578999999999999999999999999998665432    22334566899999999999


Q ss_pred             EEEEEeCCCCEEEEEcCCCe------------------eeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEE
Q 015490          223 FLVSLGNRGPGRVWDLASSA------------------VATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVT  284 (406)
Q Consensus       223 ~l~s~s~d~~i~iwd~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~  284 (406)
                      +|++++.|+.+++||.....                  ...... .+...+.+++|+|+++.      +++++.|+.|++
T Consensus       155 ~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~------l~s~~~d~~i~i  227 (371)
T d1k8kc_         155 LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSANGSR------VAWVSHDSTVCL  227 (371)
T ss_dssp             EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSSSSE------EEEEETTTEEEE
T ss_pred             ceeccccCcEEEEEeeccCccccccccccccccccceeeeeecc-CccCcEEEEEeeccccc------ccccccCCcceE
Confidence            99999999999999986432                  122222 34456889999999873      455677999999


Q ss_pred             EeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC--CCceEEEE-------------------------
Q 015490          285 WNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDS--SSLQVRTA-------------------------  337 (406)
Q Consensus       285 ~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~--~~~~~~~~-------------------------  337 (406)
                      ||+.+++.+..+..|..+|.+++|+|++++|++|. |+.+++|..  ..+.....                         
T Consensus       228 wd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (371)
T d1k8kc_         228 ADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDK  306 (371)
T ss_dssp             EEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCC
T ss_pred             EeeecccceeeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccc
Confidence            99999999999999999999999999998887765 676666543  22221110                         


Q ss_pred             -------------eecccccceEEEEEcCCC----CeEEEEECCCcEEEEEecCCc
Q 015490          338 -------------VKKAHLGIVTALAFSYDS----RALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       338 -------------~~~~~~~~v~~~~~sp~~----~~l~s~s~dg~i~iw~~~~~~  376 (406)
                                   +...|.+.|+++++.+.+    ..++|++.||.|++||+++.+
T Consensus       307 ~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~~  362 (371)
T d1k8kc_         307 KASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE  362 (371)
T ss_dssp             CC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             eeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcCh
Confidence                         002488899999998754    358999999999999997644

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.3e-34  Score=251.74  Aligned_cols=255  Identities=16%  Similarity=0.256  Sum_probs=225.0

Q ss_pred             ceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCCEE
Q 015490          105 PVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIF  182 (406)
Q Consensus       105 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l  182 (406)
                      ....|+||.+.|++++|+|++++|++++ |+.++||+++.  ++            .+..+. |...|.+++|+|++.++
T Consensus         9 ~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~--~~------------~~~~~~~h~~~V~~~~~~~~~~~~   74 (317)
T d1vyhc1           9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET--GD------------FERTLKGHTDSVQDISFDHSGKLL   74 (317)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTT--CC------------CCEEECCCSSCEEEEEECTTSSEE
T ss_pred             ccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC--CC------------EEEEEeCCCCcEEEEeeecccccc
Confidence            4567999999999999999999999988 89999987652  22            223333 45789999999999999


Q ss_pred             EEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEc
Q 015490          183 AAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSP  262 (406)
Q Consensus       183 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  262 (406)
                      +++..++.+.+|+....+....+..+...+.++.|+++++.+++++.|+.+++||+++++....+..+ ...+.+++|++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  153 (317)
T d1vyhc1          75 ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH-REWVRMVRPNQ  153 (317)
T ss_dssp             EEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEECT
T ss_pred             cccccccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccC-CCcceeeeccc
Confidence            99999999999999988888888888889999999999999999999999999999999988887754 44678999999


Q ss_pred             CCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCC--------------------CEEEEEeCCC
Q 015490          263 LNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADG--------------------KLLAVGTASG  322 (406)
Q Consensus       263 ~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~--------------------~~l~~~~~dg  322 (406)
                      ++.      .+++++.|+.|++|+..+++....+..+...+.+++|+|++                    .++++++.|+
T Consensus       154 ~~~------~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  227 (317)
T d1vyhc1         154 DGT------LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK  227 (317)
T ss_dssp             TSS------EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS
T ss_pred             CCC------EEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCC
Confidence            987      35667789999999999999999999999999999998753                    4789999999


Q ss_pred             cEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490          323 DISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       323 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~  381 (406)
                      .|++||+.+++.+..+. +|...|.+++|+|++++|++++.||.|++||+++++.+..+
T Consensus       228 ~i~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  285 (317)
T d1vyhc1         228 TIKMWDVSTGMCLMTLV-GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL  285 (317)
T ss_dssp             EEEEEETTTTEEEEEEE-CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE
T ss_pred             EEEEEECCCCcEEEEEe-CCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEE
Confidence            99999999999999986 89999999999999999999999999999999998876554

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.8e-34  Score=261.86  Aligned_cols=244  Identities=10%  Similarity=0.035  Sum_probs=199.4

Q ss_pred             CCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCCEEEEeeCCC
Q 015490          112 DSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIFAAGSENG  189 (406)
Q Consensus       112 h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg  189 (406)
                      +.++|+|++|+|+|++|++++ ++.++||+++....            .....+. |.+.|.+++|+|++++|++|+.|+
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~------------~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~   73 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW------------VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDR   73 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE------------EEEEEEECCSSCEEEEEEETTTTEEEEEETTS
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCE------------EEEEEecCCCCCEEEEEECCCCCEEEEEECCC
Confidence            457899999999999999887 77888988764321            2233343 458899999999999999999999


Q ss_pred             eEEEEeCCCcce--EeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeee---eecccCCcceEEEEEEEcCC
Q 015490          190 NLRVFKWPSLEI--ILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVA---TPLAKENDELFASCRFSPLN  264 (406)
Q Consensus       190 ~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~  264 (406)
                      +|++||+.++..  ...+..+...|.+++|+|+++.|++++.|+.+++|++......   ......+...+.+++|+|++
T Consensus        74 ~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~  153 (371)
T d1k8kc_          74 NAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS  153 (371)
T ss_dssp             CEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS
T ss_pred             eEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccc
Confidence            999999987654  3344566779999999999999999999999999998765432   22333455678999999998


Q ss_pred             CCceEEEEEEEcCCCcEEEEEeCCC------------------ceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 015490          265 NEDYVLYIAAITDRGASIVTWNTTT------------------WKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISI  326 (406)
Q Consensus       265 ~~~~~l~~~~~~~~~~~i~~~d~~~------------------~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i  326 (406)
                      +.      +++++.|+.|++||...                  +........|...|.+++|+|++++|++++.|+.|++
T Consensus       154 ~~------l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~i  227 (371)
T d1k8kc_         154 VL------LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCL  227 (371)
T ss_dssp             SE------EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred             cc------eeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceE
Confidence            83      46778899999999764                  2355666778889999999999999999999999999


Q ss_pred             EECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCC
Q 015490          327 IDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDK  375 (406)
Q Consensus       327 ~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~  375 (406)
                      ||+.+++.+..+. .|..+|.+++|+|++++|++| .|+.+++|.....
T Consensus       228 wd~~~~~~~~~~~-~~~~~v~s~~fs~d~~~la~g-~d~~~~~~~~~~~  274 (371)
T d1k8kc_         228 ADADKKMAVATLA-SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSA  274 (371)
T ss_dssp             EEGGGTTEEEEEE-CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETT
T ss_pred             Eeeecccceeeee-cccccceeeeecCCCCEEEEE-cCCceEEEEeeCC
Confidence            9999999998886 899999999999999877754 5888888877553

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-33  Score=249.40  Aligned_cols=270  Identities=12%  Similarity=0.143  Sum_probs=205.9

Q ss_pred             EEEEEecCCCCccccceeEEecCC-CCceEEEEcc--CCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDS-DLPYRMAIHP--HGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE  165 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~sp--~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (406)
                      .+..++.....  ...+..+.+|. ..|++++|+|  ++.+|++++ |++++||++.............     ......
T Consensus        41 ~i~~~~~~~~~--~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~-----~~~~~~  113 (325)
T d1pgua1          41 FVRCLDDGDSK--VPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNV-----KSEFQV  113 (325)
T ss_dssp             EEEECCSSCCS--SCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEE-----EEEEEC
T ss_pred             EEEEEeCCCCC--ccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeeccc-----cccccc
Confidence            44555543322  34667788885 6799999998  567888887 8999999886543221111100     001122


Q ss_pred             ccCcEEEEEECCCCCEEEEeeC--CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCE-EEEEeCCCCEEEEEcCCCe
Q 015490          166 NVGQQLALTFDSEGTIFAAGSE--NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKF-LVSLGNRGPGRVWDLASSA  242 (406)
Q Consensus       166 ~~~~v~~~~~s~~g~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~s~s~d~~i~iwd~~~~~  242 (406)
                      +.++|.+++|+++++++++++.  ++.+++|++++++.+..+.+|...|.+++|+|++.+ +++++.|+.+++||....+
T Consensus       114 ~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~  193 (325)
T d1pgua1         114 LAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK  193 (325)
T ss_dssp             CSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE
T ss_pred             ccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccc
Confidence            4578999999999999887754  678999999999999898888889999999998875 7789999999999998887


Q ss_pred             eeeeccc--CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEc---CCCCEEEE
Q 015490          243 VATPLAK--ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVS---ADGKLLAV  317 (406)
Q Consensus       243 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~s---p~~~~l~~  317 (406)
                      ....+..  .+...+.+++|+|++..     ++++++.|+.|++||+++++.+..+..|...+.++.|+   |+|++|++
T Consensus       194 ~~~~~~~~~~~~~~v~~v~~~pd~~~-----~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s  268 (325)
T d1pgua1         194 FSASDRTHHKQGSFVRDVEFSPDSGE-----FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFAT  268 (325)
T ss_dssp             EEEEECSSSCTTCCEEEEEECSTTCC-----EEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEE
T ss_pred             cceecccccCCCCccEEeeeccccce-----eccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEE
Confidence            7665543  34556899999998765     45667789999999999999999999887766555555   68999999


Q ss_pred             EeCCCcEEEEECCCceEEEEeeccccc--ceEEEEEcCC-CCeEEEEECCCcEEEEEe
Q 015490          318 GTASGDISIIDSSSLQVRTAVKKAHLG--IVTALAFSYD-SRALVSASMDSSVRVTVI  372 (406)
Q Consensus       318 ~~~dg~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~sp~-~~~l~s~s~dg~i~iw~~  372 (406)
                      ++.|+.|+|||+++++.+..+. .|..  .+..+++.+. +.+|++++.||.|++||+
T Consensus       269 ~s~D~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         269 VGADATIRVWDVTTSKCVQKWT-LDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EETTSEEEEEETTTTEEEEEEE-CCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             EeCCCeEEEEECCCCCEEEEEE-ecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            9999999999999999988875 4433  3334444332 347899999999999996

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.7e-32  Score=237.45  Aligned_cols=270  Identities=14%  Similarity=0.189  Sum_probs=197.1

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEE-ecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAEL-RTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVEN  146 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~  146 (406)
                      ++++++.++..|          .+..|+.+..    +.+..+ .+|...|++++|+|++.+++++.++.+++|.......
T Consensus        23 dg~~l~s~s~Dg----------~v~vWd~~~~----~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~   88 (299)
T d1nr0a2          23 DGKTLFSADAEG----------HINSWDISTG----ISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGV   88 (299)
T ss_dssp             TSSEEEEEETTS----------CEEEEETTTC----CEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSS
T ss_pred             CCCEEEEEcCCC----------eEEEEECCCC----cEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEeccCCccc
Confidence            677777654333          3455665542    244444 4799999999999999877777788888876543211


Q ss_pred             cceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEE
Q 015490          147 TEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVS  226 (406)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s  226 (406)
                      ....          .....+...+.+++|+++++++++++ ++.+++|+...  .....  ....+.+++|+|++++|++
T Consensus        89 ~~~~----------~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~--~~~~~--~~~~~~~~~~s~~~~~l~~  153 (299)
T d1nr0a2          89 DSSK----------AVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK--LTEVP--ISYNSSCVALSNDKQFVAV  153 (299)
T ss_dssp             CTTS----------CCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE--EEEEE--CSSCEEEEEECTTSCEEEE
T ss_pred             cccc----------cccccccccccccccccccccccccc-ccccccccccc--ccccc--ccccccccccccccccccc
Confidence            1100          11122446788999999999877765 56899999543  22221  2335789999999999999


Q ss_pred             EeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEE---EEeeecCCCe
Q 015490          227 LGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRI---RTKQVVREPV  303 (406)
Q Consensus       227 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~---~~~~~~~~~i  303 (406)
                      ++.|+.+++||+++++........+...+.+++|+|++..      +++++.++.|++||+.++...   ..+..|...|
T Consensus       154 g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~------l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v  227 (299)
T d1nr0a2         154 GGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAF------LVATDQSRKVIPYSVANNFELAHTNSWTFHTAKV  227 (299)
T ss_dssp             EETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSE------EEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCE
T ss_pred             cccccccccccccccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccc
Confidence            9999999999998887655444445667999999999873      456678999999999876554   3445678899


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEe-eccc-ccceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490          304 SSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAV-KKAH-LGIVTALAFSYDSRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       304 ~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~-~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~  373 (406)
                      .+++|+|++++|++|+.||.|++||++++...... ...| ...+.++.| +++++|++++.|++|++||+.
T Consensus       228 ~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         228 ACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             ccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence            99999999999999999999999999876533222 1233 445666655 567899999999999999984

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2e-31  Score=234.02  Aligned_cols=249  Identities=13%  Similarity=0.093  Sum_probs=192.4

Q ss_pred             cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEE
Q 015490          104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIF  182 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  182 (406)
                      ...+.+.||.+.|++++|+|++++|++++ |+.+++|+++.  ++....+          ...|...|.+++|+|+|+++
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~--~~~~~~~----------~~~h~~~v~~v~~~~~g~~~   70 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST--GISNRVF----------PDVHATMITGIKTTSKGDLF   70 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--CCEEECS----------SCSCSSCEEEEEECTTSCEE
T ss_pred             ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCC--CcEEEEE----------cCCCCCcEEEEEeeccceee
Confidence            35678999999999999999999999987 89999986542  2222211          11245789999999999755


Q ss_pred             EEeeCCCeEEEEeCCCcce---EeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEE
Q 015490          183 AAGSENGNLRVFKWPSLEI---ILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCR  259 (406)
Q Consensus       183 ~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  259 (406)
                       +++.|+.+++|+......   ......+...+.+++|+++++.+++++ ++.+++|+...  .....   ......+++
T Consensus        71 -~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~--~~~~~---~~~~~~~~~  143 (299)
T d1nr0a2          71 -TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK--LTEVP---ISYNSSCVA  143 (299)
T ss_dssp             -EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE--EEEEE---CSSCEEEEE
T ss_pred             -cccceeeEEEeccCCccccccccccccccccccccccccccccccccc-ccccccccccc--ccccc---ccccccccc
Confidence             556789999999865432   112233455789999999999776665 56899999543  22222   223467899


Q ss_pred             EEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEE-EeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEe
Q 015490          260 FSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIR-TKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAV  338 (406)
Q Consensus       260 ~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~  338 (406)
                      |+|+++      .+++++.++.|++||+++++... ....|...|.+++|+|++++|++++.|+.|++||+.++......
T Consensus       144 ~s~~~~------~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~  217 (299)
T d1nr0a2         144 LSNDKQ------FVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT  217 (299)
T ss_dssp             ECTTSC------EEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC
T ss_pred             cccccc------cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999987      35566789999999998876543 34567889999999999999999999999999999877655432


Q ss_pred             e--cccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490          339 K--KAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       339 ~--~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      .  .+|...|++++|+|++++|++|+.||.|++||+++++.
T Consensus       218 ~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~  258 (299)
T d1nr0a2         218 NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD  258 (299)
T ss_dssp             CCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTS
T ss_pred             ccccccccccccccccccccceEEEcCCCEEEEEECCCCCc
Confidence            2  36889999999999999999999999999999988764

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-31  Score=238.05  Aligned_cols=251  Identities=15%  Similarity=0.205  Sum_probs=200.3

Q ss_pred             CCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeeccc-cc-CcEEEEEECC--CCCEEEEeeCCC
Q 015490          114 DLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NV-GQQLALTFDS--EGTIFAAGSENG  189 (406)
Q Consensus       114 ~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~v~~~~~s~--~g~~l~~~~~dg  189 (406)
                      ..+++++|+|+++.|+++++..+.++.|+......          .....+. |+ ..|++++|+|  ++++|++|+.||
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~----------~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg   87 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKV----------PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESG   87 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSS----------CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTS
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCc----------cceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCC
Confidence            35688999999999999877776777776543221          1122222 33 6799999998  668999999999


Q ss_pred             eEEEEeCCCcceE--------eeeeccCCceeEEEEccCCCEEEEEeC--CCCEEEEEcCCCeeeeecccCCcceEEEEE
Q 015490          190 NLRVFKWPSLEII--------LNESEAHASVKDLSFSPDGKFLVSLGN--RGPGRVWDLASSAVATPLAKENDELFASCR  259 (406)
Q Consensus       190 ~i~vwd~~~~~~~--------~~~~~~~~~i~~~~~s~~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  259 (406)
                      +|++||+..++..        ..+..+..+|.+++|+++++++++++.  ++.+++|+..+++.+..+..+ ...+.+++
T Consensus        88 ~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~  166 (325)
T d1pgua1          88 KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGH-SQRINACH  166 (325)
T ss_dssp             EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSC-SSCEEEEE
T ss_pred             CEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeec-cccccccc
Confidence            9999998654422        223446668999999999999888764  678999999999988888754 55688999


Q ss_pred             EEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEee---ecCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCceEE
Q 015490          260 FSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQ---VVREPVSSFNVSAD-GKLLAVGTASGDISIIDSSSLQVR  335 (406)
Q Consensus       260 ~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~---~~~~~i~~~~~sp~-~~~l~~~~~dg~i~i~d~~~~~~~  335 (406)
                      |+|+++.     .+++++.|+.+++||....+......   .+...|.+++|+|+ +.++++++.|+.|++||+++++.+
T Consensus       167 ~~~~~~~-----~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~  241 (325)
T d1pgua1         167 LKQSRPM-----RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL  241 (325)
T ss_dssp             ECSSSSC-----EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE
T ss_pred             ccccccc-----eEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccc
Confidence            9999885     45666789999999999887766654   34577999999996 689999999999999999999999


Q ss_pred             EEeecccccceEEEEEc---CCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490          336 TAVKKAHLGIVTALAFS---YDSRALVSASMDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       336 ~~~~~~~~~~v~~~~~s---p~~~~l~s~s~dg~i~iw~~~~~~~~~~~  381 (406)
                      ..+. +|..++.++.|+   |+|++|++++.|+.|+|||+++++.+..+
T Consensus       242 ~~l~-~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~  289 (325)
T d1pgua1         242 KYIE-DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKW  289 (325)
T ss_dssp             EECC-BTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             cccc-ccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEE
Confidence            9886 788877666665   68999999999999999999998865443

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.1e-30  Score=229.76  Aligned_cols=241  Identities=16%  Similarity=0.217  Sum_probs=193.0

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVEN  146 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~  146 (406)
                      +++++++++..|          .+..|+...    .+.+..+..|...|.+++|+|++.++++++ ++.+.+|.+.....
T Consensus        66 ~~~~l~sgs~Dg----------~v~iWd~~~----~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~  131 (340)
T d1tbga_          66 DSRLLVSASQDG----------KLIIWDSYT----TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG  131 (340)
T ss_dssp             TSSEEEEEETTT----------EEEEEETTT----TEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCS
T ss_pred             CCCEEEEEECCC----------ceeeeeccc----ceeEEEEecccccEEeeEeeccceeeeeecccceeeccccccccc
Confidence            667777664433          456666655    346788999999999999999999999987 88888887554322


Q ss_pred             cceee--cce------------------------------eccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEE
Q 015490          147 TEIRR--LGV------------------------------KISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVF  194 (406)
Q Consensus       147 ~~~~~--~~~------------------------------~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vw  194 (406)
                      .....  +..                              ...............+....+.+.+.++++|+.|+.|++|
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~  211 (340)
T d1tbga_         132 NVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW  211 (340)
T ss_dssp             CCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred             ccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEE
Confidence            11100  000                              0000111112233567888999999999999999999999


Q ss_pred             eCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeeccc-CCcceEEEEEEEcCCCCceEEEEE
Q 015490          195 KWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAK-ENDELFASCRFSPLNNEDYVLYIA  273 (406)
Q Consensus       195 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~  273 (406)
                      |+++++.+..+..|...|++++|+|++++|++++.|+.|++||++.......+.. .+...+.+++|+|+++.      +
T Consensus       212 d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~------l  285 (340)
T d1tbga_         212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL------L  285 (340)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCE------E
T ss_pred             ECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCE------E
Confidence            9999999999988888999999999999999999999999999999887766543 34456889999999983      5


Q ss_pred             EEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 015490          274 AITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIID  328 (406)
Q Consensus       274 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d  328 (406)
                      ++++.|+.|++||+.+++.+..+.+|...|++++|+|++++|++|+.||.|+|||
T Consensus       286 ~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         286 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            5677899999999999999999999999999999999999999999999999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.3e-28  Score=220.08  Aligned_cols=246  Identities=18%  Similarity=0.197  Sum_probs=190.2

Q ss_pred             eeEEecCCCCc-eEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCCEE
Q 015490          106 VAELRTDSDLP-YRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIF  182 (406)
Q Consensus       106 ~~~~~~h~~~v-~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l  182 (406)
                      ..+|+||.+.| +|++|  ++++|++|+ |+.++||++.  +            .+.+..+. |.+.|.+++|+|+ .+|
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~--~------------~~~~~~l~~H~~~V~~l~~s~~-~~l   67 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSI--N------------KKFLLQLSGHDGGVWALKYAHG-GIL   67 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETT--T------------TEEEEEEECCSSCEEEEEEETT-TEE
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECC--C------------CcEEEEEECCCCCEEEEEEcCC-CEE
Confidence            56799999886 55555  678999988 8888887654  2            23334444 4588999999986 589


Q ss_pred             EEeeCCCeEEEEeCCCcceEeeeeccCC--ceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCC---------
Q 015490          183 AAGSENGNLRVFKWPSLEIILNESEAHA--SVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKEN---------  251 (406)
Q Consensus       183 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~---------  251 (406)
                      ++|+.|++|++|++...+..........  ......+++++.++++++.|+.|++||+++...........         
T Consensus        68 ~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  147 (355)
T d1nexb2          68 VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTP  147 (355)
T ss_dssp             EEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCT
T ss_pred             EEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceecc
Confidence            9999999999999998887665554443  45667788999999999999999999998765433221110         


Q ss_pred             ---cceE--------EEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC
Q 015490          252 ---DELF--------ASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA  320 (406)
Q Consensus       252 ---~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~  320 (406)
                         ...+        ....+.++++      .++.+..++.+++||+++++.+.....+...+.++.|+|+++++++++.
T Consensus       148 ~~~~~~~~~~~~~~~~v~~~~~~~~------~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (355)
T d1nexb2         148 EENPYFVGVLRGHMASVRTVSGHGN------IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM  221 (355)
T ss_dssp             TTCTTEEEEEECCSSCEEEEEEETT------EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEET
T ss_pred             ccccceeeeeeeccccccccccccc------eeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccc
Confidence               0000        1123444554      3456678899999999999999988888889999999999999999999


Q ss_pred             CCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490          321 SGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       321 dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      |+.|++||++++..+..+. +|...|.+++|++  ++|++++.||.|++||++++..
T Consensus       222 d~~i~i~d~~~~~~~~~~~-~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~  275 (355)
T d1nexb2         222 DTTIRIWDLENGELMYTLQ-GHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSR  275 (355)
T ss_dssp             TSCEEEEETTTCCEEEEEC-CCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCE
T ss_pred             cceEEeeeccccccccccc-ccccccccccccc--ceeeeeecccccccccccccce
Confidence            9999999999999999886 8999999999874  6899999999999999987654

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.4e-29  Score=228.56  Aligned_cols=259  Identities=16%  Similarity=0.183  Sum_probs=185.6

Q ss_pred             eEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCc------EEEEEECC-C
Q 015490          107 AELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQ------QLALTFDS-E  178 (406)
Q Consensus       107 ~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------v~~~~~s~-~  178 (406)
                      ...++|.+.|.++++++  +++++++ |+.++||+..........       ........+...      ...+..+. +
T Consensus         8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPK-------DKSYSHFVHKSGLHHVDVLQAIERDAFE   78 (393)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGG-------GGEEEEECCTTCEEEEEEEEEEETTTEE
T ss_pred             ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCccc-------ceeEeeeeccCCceEeeeEeeeccCCCC
Confidence            44579999999999875  6888887 889999875543221111       111111112111      22222222 3


Q ss_pred             CCEEEEeeCCCeEEEEeCCCcceEeee----------eccCCceeEEEEccC-----CCEEEEEeCCCCEEEEEcCCCee
Q 015490          179 GTIFAAGSENGNLRVFKWPSLEIILNE----------SEAHASVKDLSFSPD-----GKFLVSLGNRGPGRVWDLASSAV  243 (406)
Q Consensus       179 g~~l~~~~~dg~i~vwd~~~~~~~~~~----------~~~~~~i~~~~~s~~-----~~~l~s~s~d~~i~iwd~~~~~~  243 (406)
                      +.++++++.||.|++|++.........          ..+...+..++|.++     +.++++++.|+++++|++.....
T Consensus        79 ~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~  158 (393)
T d1sq9a_          79 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD  158 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred             CcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCc
Confidence            357889999999999997543221111          112235778888775     45789999999999999853211


Q ss_pred             -----------------eeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEee------ecC
Q 015490          244 -----------------ATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQ------VVR  300 (406)
Q Consensus       244 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~------~~~  300 (406)
                                       ...........+.+++|+|++       ++++++.|+.|++||+.+++++..+.      .|.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-------~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~  231 (393)
T d1sq9a_         159 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-------LIATGFNNGTVQISELSTLRPLYNFESQHSMINNS  231 (393)
T ss_dssp             HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-------EEEEECTTSEEEEEETTTTEEEEEEECCC---CCC
T ss_pred             ccceeeeeeccceecccceecccCCCCcEEEEEECCCC-------EEEEEeCCCcEEEEeeccccccccccccccccccc
Confidence                             011111233457789999986       34678899999999999988876554      467


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCc---EEEEECCCceEEEEee------------cccccceEEEEEcCCCCeEEEEECCC
Q 015490          301 EPVSSFNVSADGKLLAVGTASGD---ISIIDSSSLQVRTAVK------------KAHLGIVTALAFSYDSRALVSASMDS  365 (406)
Q Consensus       301 ~~i~~~~~sp~~~~l~~~~~dg~---i~i~d~~~~~~~~~~~------------~~~~~~v~~~~~sp~~~~l~s~s~dg  365 (406)
                      .+|.+++|+|+|++|++|+.|++   |++||+++++.+..+.            .+|...|++++|+|++++|+|++.|+
T Consensus       232 ~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~  311 (393)
T d1sq9a_         232 NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG  311 (393)
T ss_dssp             CCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS
T ss_pred             ceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCC
Confidence            89999999999999999998874   8999999988877763            37999999999999999999999999


Q ss_pred             cEEEEEecCCcCCCCc
Q 015490          366 SVRVTVIEDKKKSGGL  381 (406)
Q Consensus       366 ~i~iw~~~~~~~~~~~  381 (406)
                      +|++||+++++.+..+
T Consensus       312 ~v~vWd~~~g~~~~~l  327 (393)
T d1sq9a_         312 KLRFWDVKTKERITTL  327 (393)
T ss_dssp             EEEEEETTTTEEEEEE
T ss_pred             EEEEEECCCCCEEEEE
Confidence            9999999998776543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=8.8e-30  Score=222.07  Aligned_cols=235  Identities=14%  Similarity=0.129  Sum_probs=176.1

Q ss_pred             cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEE
Q 015490          104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIF  182 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  182 (406)
                      ++++++++|.++|++++|+|    |++|+ |+.+++|+...  ..                ..|...|.++++++++ .+
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~--~~----------------~~h~~~V~~~~~~~~~-~~   60 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS--MH----------------QDHSNLIVSLDNSKAQ-EY   60 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTE--EE----------------CCCCSCEEEEECCSTT-CC
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCC--CC----------------CCCCCCEEEEEecCCC-eE
Confidence            57889999999999999987    77776 88888865332  11                1234556666666543 35


Q ss_pred             EEeeCCCeEEEEeCC----------------------------------CcceEeeeeccCCceeEEEEccCCCEEEEEe
Q 015490          183 AAGSENGNLRVFKWP----------------------------------SLEIILNESEAHASVKDLSFSPDGKFLVSLG  228 (406)
Q Consensus       183 ~~~~~dg~i~vwd~~----------------------------------~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s  228 (406)
                      ++++.|+++++|++.                                  +++....+.. .  ....++++++..+++++
T Consensus        61 ~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~v~~  137 (287)
T d1pgua2          61 SSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL-N--SPGSAVSLSQNYVAVGL  137 (287)
T ss_dssp             EEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEEC-S--SCEEEEEECSSEEEEEE
T ss_pred             EEEeeccccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccc-c--ceeeeeeccCcceeeec
Confidence            566666666666543                                  2322222211 1  12345677788888887


Q ss_pred             CCC-CEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEE-eeecCCCeEEE
Q 015490          229 NRG-PGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRT-KQVVREPVSSF  306 (406)
Q Consensus       229 ~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~-~~~~~~~i~~~  306 (406)
                      .++ .+++|++...+....+...+...+.+++|+|++..      +++++.++.|++||+.+++.... +..|...|.++
T Consensus       138 ~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~------l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~  211 (287)
T d1pgua2         138 EEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETY------IAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAI  211 (287)
T ss_dssp             TTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSE------EEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEE
T ss_pred             cccceeeeeeccccceeeeeeeccCCceeEEEeccCccc------cccccccccccceeeccccccccccccccccccee
Confidence            765 79999998877777776667778999999999983      56667899999999999876543 56788899999


Q ss_pred             EEcCC----------CCEEEEEeCCCcEEEEECCCce-EEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEe
Q 015490          307 NVSAD----------GKLLAVGTASGDISIIDSSSLQ-VRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVI  372 (406)
Q Consensus       307 ~~sp~----------~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~  372 (406)
                      +|+|+          +.++++|+.|++|++||+++.. .+..+ .+|...|++++|+|++ .|++++.|++|++|++
T Consensus       212 ~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~-~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         212 SWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL-NAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEET-TSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             eecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEe-CCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            99874          4689999999999999997744 44444 5899999999999986 5889999999999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.4e-28  Score=216.56  Aligned_cols=273  Identities=16%  Similarity=0.201  Sum_probs=198.9

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVEN  146 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~  146 (406)
                      +++++++++..|          .+..|+...    .+.+.++.+|.+.|++++|+|++ +|++++ |+.+++|++.... 
T Consensus        22 ~~~~l~tgs~Dg----------~i~vWd~~~----~~~~~~l~~H~~~V~~l~~s~~~-~l~s~s~D~~i~iw~~~~~~-   85 (355)
T d1nexb2          22 EDNYVITGADDK----------MIRVYDSIN----KKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGC-   85 (355)
T ss_dssp             ETTEEEEEETTT----------EEEEEETTT----TEEEEEEECCSSCEEEEEEETTT-EEEEEETTCCEEEEETTTTE-
T ss_pred             CCCEEEEEeCCC----------eEEEEECCC----CcEEEEEECCCCCEEEEEEcCCC-EEEEEecccccccccccccc-
Confidence            456776654322          456666654    35788999999999999999865 677776 8999988765421 


Q ss_pred             cceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccC-----------------
Q 015490          147 TEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAH-----------------  209 (406)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-----------------  209 (406)
                       ....         ..............+++++.++++++.|+.|++||+.+...........                 
T Consensus        86 -~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (355)
T d1nexb2          86 -CTHV---------FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVG  155 (355)
T ss_dssp             -EEEE---------ECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEE
T ss_pred             -cccc---------cccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceee
Confidence             1111         1111122345667788999999999999999999997655332211100                 


Q ss_pred             ----CceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEE
Q 015490          210 ----ASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTW  285 (406)
Q Consensus       210 ----~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~  285 (406)
                          .......+.+++++++++..|+.+++||+++++.......+. ..+.++.|++++..      ++.++.|+.|++|
T Consensus       156 ~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~~~d~~i~i~  228 (355)
T d1nexb2         156 VLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT-DRIYSTIYDHERKR------CISASMDTTIRIW  228 (355)
T ss_dssp             EEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS-SCEEEEEEETTTTE------EEEEETTSCEEEE
T ss_pred             eeeeccccccccccccceeeeecccceeeeeecccccceeeeeccc-ccccccccccccee------eecccccceEEee
Confidence                011123455678899999999999999999998887776543 45678999999884      4556789999999


Q ss_pred             eCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEE-EEcCCCCeEEEEECC
Q 015490          286 NTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTAL-AFSYDSRALVSASMD  364 (406)
Q Consensus       286 d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~-~~sp~~~~l~s~s~d  364 (406)
                      |.+++..+..+..|...|.+++++  +++|++|+.||.|++||+++.......   |...+.++ .+++++++|++| .|
T Consensus       229 d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~g-~d  302 (355)
T d1nexb2         229 DLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY---HHTNLSAITTFYVSDNILVSG-SE  302 (355)
T ss_dssp             ETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEEE---ECTTCCCCCEEEECSSEEEEE-ET
T ss_pred             eccccccccccccccccccccccc--cceeeeeecccccccccccccceeccc---ccCCceEEEEEcCCCCEEEEE-eC
Confidence            999999999999999999999987  469999999999999999988765443   55555554 456777766655 58


Q ss_pred             CcEEEEEecCCcCCC
Q 015490          365 SSVRVTVIEDKKKSG  379 (406)
Q Consensus       365 g~i~iw~~~~~~~~~  379 (406)
                      ++|++||+++++.+.
T Consensus       303 ~~i~vwd~~tg~~~~  317 (355)
T d1nexb2         303 NQFNIYNLRSGKLVH  317 (355)
T ss_dssp             TEEEEEETTTCCBCC
T ss_pred             CEEEEEECCCCCEEE
Confidence            999999999998764

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.9e-28  Score=220.63  Aligned_cols=209  Identities=20%  Similarity=0.351  Sum_probs=171.3

Q ss_pred             ecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeec------------------cCCceeEEEEccCCCE
Q 015490          162 SQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESE------------------AHASVKDLSFSPDGKF  223 (406)
Q Consensus       162 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~------------------~~~~i~~~~~s~~~~~  223 (406)
                      ..+.|.+.|+|++|+|||++||+|+ |++|+|||+.+++.+..+..                  +...|++++|+|++++
T Consensus        57 ~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~  135 (388)
T d1erja_          57 KSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF  135 (388)
T ss_dssp             EEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred             eeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCc
Confidence            3456779999999999999999987 89999999998887655432                  3346999999999999


Q ss_pred             EEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCe
Q 015490          224 LVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPV  303 (406)
Q Consensus       224 l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i  303 (406)
                      |++++.|+.|++||...++....+..+ ...+.++.|++++..      ++.++.++.+++||.++.........+...+
T Consensus       136 l~s~~~dg~v~i~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~------~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~  208 (388)
T d1erja_         136 LATGAEDRLIRIWDIENRKIVMILQGH-EQDIYSLDYFPSGDK------LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVT  208 (388)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSE------EEEEETTSEEEEEETTTTEEEEEEECSSCEE
T ss_pred             ceecccccccccccccccccccccccc-ccccccccccccccc------ccccccceeeeeeeccccccccccccccccc
Confidence            999999999999999999988887654 456889999998873      4566789999999999988887777665544


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEee------cccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490          304 SSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVK------KAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       304 ~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      ....+.+++++|++++.|+.|++||..++.....+.      .+|...|.+++|+|++++|++++.||.|++||+.+++.
T Consensus       209 ~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~  288 (388)
T d1erja_         209 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN  288 (388)
T ss_dssp             EEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----
T ss_pred             cccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcc
Confidence            444444588999999999999999999888766553      35788999999999999999999999999999988765


Q ss_pred             C
Q 015490          378 S  378 (406)
Q Consensus       378 ~  378 (406)
                      .
T Consensus       289 ~  289 (388)
T d1erja_         289 K  289 (388)
T ss_dssp             -
T ss_pred             c
Confidence            4

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=8.8e-29  Score=219.62  Aligned_cols=262  Identities=11%  Similarity=0.050  Sum_probs=191.1

Q ss_pred             cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCC-CE
Q 015490          104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEG-TI  181 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~  181 (406)
                      +.+...++|++.|++|+|+|++++|++++ |++++||+++....          .........|...|.+++|+|++ .+
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~----------~~~~~~~~~h~~~V~~v~f~~~~~~~   71 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK----------NVDLLQSLRYKHPLLCCNFIDNTDLQ   71 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT----------EEEEEEEEECSSCEEEEEEEESSSEE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCc----------ceEEEEecCCCCCEEEEEEeCCCCCE
Confidence            34566789999999999999999999998 99999998875422          12223334577899999999864 68


Q ss_pred             EEEeeCCCeEEEEeCCCcceEeeeeccCC-ceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeee----ecccC-CcceE
Q 015490          182 FAAGSENGNLRVFKWPSLEIILNESEAHA-SVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT----PLAKE-NDELF  255 (406)
Q Consensus       182 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~----~~~~~-~~~~~  255 (406)
                      |++|+.||.|++|++...........+.. ......+.++...+++++.++.+++||++++....    ..... .....
T Consensus        72 l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~  151 (342)
T d1yfqa_          72 IYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKN  151 (342)
T ss_dssp             EEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCC
T ss_pred             EEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeeccccccccccee
Confidence            99999999999999988877666655554 44555667788899999999999999986543222    11111 12223


Q ss_pred             EEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEE---EeeecCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC
Q 015490          256 ASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIR---TKQVVREPVSSFNVSA-DGKLLAVGTASGDISIIDSSS  331 (406)
Q Consensus       256 ~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~---~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~i~i~d~~~  331 (406)
                      ....+.+.+..      ++.++.++.|++||++..+...   ........+.+..+.+ ++..+++++.||.+.+|+...
T Consensus       152 ~~~~~~~~~~~------~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~  225 (342)
T d1yfqa_         152 KIFTMDTNSSR------LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDD  225 (342)
T ss_dssp             CEEEEEECSSE------EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCT
T ss_pred             eeeeeeccCCc------eeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecC
Confidence            34566666663      4556679999999997654322   2222334455555544 778999999999999999764


Q ss_pred             ceEE---------EEe-----ecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490          332 LQVR---------TAV-----KKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       332 ~~~~---------~~~-----~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~  381 (406)
                      ....         ...     ...|...|++++|+|++++|+||+.||.|++||+++++.+.++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~  289 (342)
T d1yfqa_         226 QGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF  289 (342)
T ss_dssp             TCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred             CcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEe
Confidence            3211         110     1246678999999999999999999999999999998876554

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.5e-27  Score=211.86  Aligned_cols=248  Identities=19%  Similarity=0.219  Sum_probs=186.3

Q ss_pred             cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCCE
Q 015490          104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTI  181 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~  181 (406)
                      ++...+++|++.|.+ +++++|++|++|+ |+.++||++.  +++            ++..+. |.+.|.+++|+++  +
T Consensus         7 ~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~--~~~------------~~~~~~~h~~~V~~v~~~~~--~   69 (342)
T d2ovrb2           7 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAV--TGK------------CLRTLVGHTGGVWSSQMRDN--I   69 (342)
T ss_dssp             CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETT--TCC------------EEEECCCCSSCEEEEEEETT--E
T ss_pred             CcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECC--CCC------------EEEEEeCCCCCEEEEEeCCC--c
Confidence            577889999999975 4677899999988 8999998654  232            333344 4488999999875  8


Q ss_pred             EEEeeCCCeEEEEeCCCcceEeeeeccCCcee--------------------------------------EEEEccCCCE
Q 015490          182 FAAGSENGNLRVFKWPSLEIILNESEAHASVK--------------------------------------DLSFSPDGKF  223 (406)
Q Consensus       182 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~--------------------------------------~~~~s~~~~~  223 (406)
                      |++|+.|+.+++|+................+.                                      ...+.+....
T Consensus        70 l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (342)
T d2ovrb2          70 IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR  149 (342)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSC
T ss_pred             cccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccce
Confidence            99999999999999865543322221111111                                      1122334556


Q ss_pred             EEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCe
Q 015490          224 LVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPV  303 (406)
Q Consensus       224 l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i  303 (406)
                      +++++.|+.+++||.+..+....+..+...   ...+.+++.      .+++++.|+.|++||++.++.+..+..|...+
T Consensus       150 ~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~------~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v  220 (342)
T d2ovrb2         150 VVSGAYDFMVKVWDPETETCLHTLQGHTNR---VYSLQFDGI------HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT  220 (342)
T ss_dssp             EEEEETTSCEEEEEGGGTEEEEEECCCSSC---EEEEEECSS------EEEEEETTSCEEEEETTTCCEEEEECCCCSCE
T ss_pred             eeeecCCCeEEEeecccceeeEEEcCcccc---cccccCCCC------EEEEEeCCCeEEEeecccceeeeEecccccce
Confidence            788888999999999888888777655432   344555665      35667789999999999999999999999888


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeec--ccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490          304 SSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKK--AHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       304 ~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~  381 (406)
                      .+++++  +++|++++.|+.|++||+...+....+..  .|...+.++.++  ++++++|+.||+|++||+++++.+..+
T Consensus       221 ~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~  296 (342)
T d2ovrb2         221 SGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNL  296 (342)
T ss_dssp             EEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             eEEecC--CCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEE
Confidence            888776  56999999999999999998887777652  345566666665  569999999999999999999876554

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.7e-27  Score=207.67  Aligned_cols=277  Identities=13%  Similarity=0.130  Sum_probs=199.1

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVEN  146 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~  146 (406)
                      ++++++.++..|          .+..|+...    .+++.++.+|.+.|.+++|+|+  +|++++ |+.+++|.......
T Consensus        26 ~g~~l~sgs~Dg----------~i~vWd~~~----~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~   89 (342)
T d2ovrb2          26 CGNRIVSGSDDN----------TLKVWSAVT----GKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGEC   89 (342)
T ss_dssp             ETTEEEEEETTS----------CEEEEETTT----CCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEE
T ss_pred             CCCEEEEEeCCC----------eEEEEECCC----CCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccc
Confidence            456666654332          345566554    3578899999999999999974  788777 88888887654321


Q ss_pred             cceeecce--------ec------------------cceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc
Q 015490          147 TEIRRLGV--------KI------------------SEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLE  200 (406)
Q Consensus       147 ~~~~~~~~--------~~------------------~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~  200 (406)
                      ........        ..                  ..+....+..... ....+.+....+++++.|+.|++||.....
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~  168 (342)
T d2ovrb2          90 IHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVA-AVRCVQYDGRRVVSGAYDFMVKVWDPETET  168 (342)
T ss_dssp             EEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSS-CEEEEEECSSCEEEEETTSCEEEEEGGGTE
T ss_pred             eecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccc-cceeeccccceeeeecCCCeEEEeecccce
Confidence            11100000        00                  0000000111111 122333455678899999999999999888


Q ss_pred             eEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCc
Q 015490          201 IILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGA  280 (406)
Q Consensus       201 ~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  280 (406)
                      .+..+..|...+..  +++++.++++++.|+.|++||++.++.+..+..+. ..+.++++++  +      .+++++.|+
T Consensus       169 ~~~~~~~~~~~~~~--~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~-~~v~~~~~~~--~------~l~s~s~d~  237 (342)
T d2ovrb2         169 CLHTLQGHTNRVYS--LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ-SLTSGMELKD--N------ILVSGNADS  237 (342)
T ss_dssp             EEEEECCCSSCEEE--EEECSSEEEEEETTSCEEEEETTTCCEEEEECCCC-SCEEEEEEET--T------EEEEEETTS
T ss_pred             eeEEEcCccccccc--ccCCCCEEEEEeCCCeEEEeecccceeeeEecccc-cceeEEecCC--C------EEEEEcCCC
Confidence            88888777665544  45578899999999999999999999888877654 4566776665  3      346667899


Q ss_pred             EEEEEeCCCceEEEEeeec---CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEee----cccccceEEEEEcC
Q 015490          281 SIVTWNTTTWKRIRTKQVV---REPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVK----KAHLGIVTALAFSY  353 (406)
Q Consensus       281 ~i~~~d~~~~~~~~~~~~~---~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~~v~~~~~sp  353 (406)
                      .|++||....+....+..+   ...+.++.++  ++++++|+.||.|++||+++++.+..+.    .+|...|++++|+|
T Consensus       238 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~  315 (342)
T d2ovrb2         238 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN  315 (342)
T ss_dssp             CEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS
T ss_pred             EEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECC
Confidence            9999999998887777653   3556666655  6799999999999999999999888774    25778899999999


Q ss_pred             CCCeEEEEECCCc----EEEEEecC
Q 015490          354 DSRALVSASMDSS----VRVTVIED  374 (406)
Q Consensus       354 ~~~~l~s~s~dg~----i~iw~~~~  374 (406)
                      ++.+|++|+.||+    |++||++.
T Consensus       316 ~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         316 TKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            9999999999985    99999864

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.1e-26  Score=211.86  Aligned_cols=258  Identities=14%  Similarity=0.138  Sum_probs=173.8

Q ss_pred             EEEEEecC--CCCccccceeEEecCCCCceEEEEc------c-CCCeEEEEe-cCCeEEEEEecccccceeecceeccce
Q 015490           90 LLSHFDFA--SNSLSDQPVAELRTDSDLPYRMAIH------P-HGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEK  159 (406)
Q Consensus        90 ~~~~~~~~--~~~~~~~~~~~~~~h~~~v~~~~~s------p-~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~  159 (406)
                      .+..|+..  ..............|...+..+...      . ++..+++++ |+.+++|............. .  ...
T Consensus        35 ~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~-~--~~~  111 (393)
T d1sq9a_          35 YLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIF-E--KLD  111 (393)
T ss_dssp             EEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEE-E--EEC
T ss_pred             eEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeec-c--ccc
Confidence            34445533  2233333444555566554433321      1 123455555 89999988765432211110 0  111


Q ss_pred             eeecccccCcEEEEEECCC-----CCEEEEeeCCCeEEEEeCCCcc------------------eEeeeeccCCceeEEE
Q 015490          160 VLSQLENVGQQLALTFDSE-----GTIFAAGSENGNLRVFKWPSLE------------------IILNESEAHASVKDLS  216 (406)
Q Consensus       160 ~~~~~~~~~~v~~~~~s~~-----g~~l~~~~~dg~i~vwd~~~~~------------------~~~~~~~~~~~i~~~~  216 (406)
                      ......+...+..++|.++     +.++++++.||++++|++....                  .......+...+.+++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  191 (393)
T d1sq9a_         112 LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVD  191 (393)
T ss_dssp             CSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEE
T ss_pred             eeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEE
Confidence            1112223456777888765     4688999999999999974211                  0111112233688999


Q ss_pred             EccCCCEEEEEeCCCCEEEEEcCCCeeeeeccc-----CCcceEEEEEEEcCCCCceEEEEEEEcCCC---cEEEEEeCC
Q 015490          217 FSPDGKFLVSLGNRGPGRVWDLASSAVATPLAK-----ENDELFASCRFSPLNNEDYVLYIAAITDRG---ASIVTWNTT  288 (406)
Q Consensus       217 ~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~i~~~d~~  288 (406)
                      |+|++ +|++|+.|++|++||+.+++.+..+..     .|...|.+++|+|+++.      +++++.|   +.|++||++
T Consensus       192 ~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~------l~sgs~D~t~~~i~lwd~~  264 (393)
T d1sq9a_         192 ISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL------LAIAHDSNSFGCITLYETE  264 (393)
T ss_dssp             ECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTE------EEEEEEETTEEEEEEEETT
T ss_pred             ECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccce------eeeecCCCCcceeeecccc
Confidence            99997 899999999999999999988765542     35667999999999983      3444444   469999999


Q ss_pred             CceEEEEee-------------ecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceE----EEEE
Q 015490          289 TWKRIRTKQ-------------VVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVT----ALAF  351 (406)
Q Consensus       289 ~~~~~~~~~-------------~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~----~~~~  351 (406)
                      +++.+..+.             +|...|++++|+|++++|++|+.|++|++||+++++.+.++. +|...|.    .++|
T Consensus       265 ~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~-gH~~~v~~~~~~~~~  343 (393)
T d1sq9a_         265 FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN-MHCDDIEIEEDILAV  343 (393)
T ss_dssp             TCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE-CCGGGCSSGGGCCCB
T ss_pred             cceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEEC-CcCCcccCCccEEEE
Confidence            988877764             688899999999999999999999999999999999999986 8876654    3455


Q ss_pred             cCCCCeE
Q 015490          352 SYDSRAL  358 (406)
Q Consensus       352 sp~~~~l  358 (406)
                      +|++..+
T Consensus       344 ~~~~~~~  350 (393)
T d1sq9a_         344 DEHGDSL  350 (393)
T ss_dssp             CTTSCBC
T ss_pred             CCCCCEE
Confidence            5554443

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=1.7e-27  Score=213.80  Aligned_cols=274  Identities=10%  Similarity=0.023  Sum_probs=197.5

Q ss_pred             CCCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecc
Q 015490           66 IRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEV  144 (406)
Q Consensus        66 ~~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~  144 (406)
                      |.++++++++..|           .++.|+.+.+     .+..+ +|...|.+++|+|||++|++++ +..-.|+.|+..
T Consensus        12 P~dG~~~a~~~~g-----------~v~v~d~~~~-----~~~~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~   74 (360)
T d1k32a3          12 PLDGDLIAFVSRG-----------QAFIQDVSGT-----YVLKV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYR   74 (360)
T ss_dssp             ECGGGCEEEEETT-----------EEEEECTTSS-----BEEEC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETT
T ss_pred             CCCCCEEEEEECC-----------eEEEEECCCC-----cEEEc-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECC
Confidence            3367777765331           5677777653     23333 7999999999999999998876 443456667765


Q ss_pred             cccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEE
Q 015490          145 ENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFL  224 (406)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  224 (406)
                      +++            ..+...+...+.+++|+|||++|++++.++.+++|++.+++....+..+...+.+++|+|||++|
T Consensus        75 ~~~------------~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l  142 (360)
T d1k32a3          75 TGK------------AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFI  142 (360)
T ss_dssp             TCC------------EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEE
T ss_pred             CCc------------EEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeee
Confidence            332            22234466889999999999999999999999999999999888887787889999999999999


Q ss_pred             EEEeC----------CCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceE--
Q 015490          225 VSLGN----------RGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKR--  292 (406)
Q Consensus       225 ~s~s~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~--  292 (406)
                      +.+..          ++.+++||+.+++.......  ......+.|+|+++.      ++.++.++.+.+||......  
T Consensus       143 a~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~--~~~~~~~~~spdg~~------l~~~s~~~~~~~~d~~~~~~~~  214 (360)
T d1k32a3         143 AYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTE--NSHDYAPAFDADSKN------LYYLSYRSLDPSPDRVVLNFSF  214 (360)
T ss_dssp             EEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCS--SSBEEEEEECTTSCE------EEEEESCCCCCEECSSSSCEEC
T ss_pred             eeeccccccceeeccccceeeeccccCceeeeccc--ccccccccccCCCCE------EEEEeCCCceEcccccccceee
Confidence            87642          44689999998877665543  334678999999984      33445677888888654321  


Q ss_pred             -----EEEeeec------------------------------------CCCeEEEEEcCCCC-------------EEEEE
Q 015490          293 -----IRTKQVV------------------------------------REPVSSFNVSADGK-------------LLAVG  318 (406)
Q Consensus       293 -----~~~~~~~------------------------------------~~~i~~~~~sp~~~-------------~l~~~  318 (406)
                           ...+..+                                    .+....+...+++.             +++.+
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (360)
T d1k32a3         215 EVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGA  294 (360)
T ss_dssp             CSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCC
T ss_pred             ccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEec
Confidence                 1111111                                    11222333333222             33445


Q ss_pred             eCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490          319 TASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       319 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~  381 (406)
                      +.++.|++||+.+++..     .|.+.|.+++|+|||++|++++.||.|++||+++++....+
T Consensus       295 ~~~~~i~~~d~~~~~~~-----~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~  352 (360)
T d1k32a3         295 PEKGVLLKYDVKTRKVT-----EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV  352 (360)
T ss_dssp             CCCEEEEEEETTTCCEE-----EEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEEC
T ss_pred             CCCCEEEEEECCCCeEE-----EecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEE
Confidence            56788999999887643     34556899999999999999999999999999998875544

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.7e-25  Score=191.86  Aligned_cols=241  Identities=17%  Similarity=0.272  Sum_probs=185.8

Q ss_pred             cceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCCE
Q 015490          104 QPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTI  181 (406)
Q Consensus       104 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~  181 (406)
                      +.+.....|...|+|++|  ++++|++|+ |+.++||+++              ..+.+..+. |.+.|.+++|  ++++
T Consensus         6 ~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~--------------~~~~~~~l~~H~~~V~~v~~--~~~~   67 (293)
T d1p22a2           6 QRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKN--------------TLECKRILTGHTGSVLCLQY--DERV   67 (293)
T ss_dssp             CCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESS--------------SCCEEEEECCCSSCEEEEEC--CSSE
T ss_pred             EEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECC--------------CCcEEEEEecCCCCEeeeec--ccce
Confidence            455566788899998765  789999998 8999998764              233344444 4478998887  6789


Q ss_pred             EEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeec--ccCCcceEEEEE
Q 015490          182 FAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPL--AKENDELFASCR  259 (406)
Q Consensus       182 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~  259 (406)
                      |++|+.|+.|++|++..+...........  ....+.+....++++..++.+.+||..+.......  ...+...+..+.
T Consensus        68 l~s~s~D~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  145 (293)
T d1p22a2          68 IITGSSDSTVRVWDVNTGEMLNTLIHHCE--AVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVD  145 (293)
T ss_dssp             EEEEETTSCEEEEESSSCCEEEEECCCCS--CEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEE
T ss_pred             eeccccccccccccccccccccccccccc--ccccccccccceeecccccceeEeeccccccccccccccccccccccce
Confidence            99999999999999998887766554443  33445556778999999999999999876543221  223344566666


Q ss_pred             EEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEee
Q 015490          260 FSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVK  339 (406)
Q Consensus       260 ~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  339 (406)
                      +.+..        ..+++.|+.+++||.++++.+..+..+...+..+.++  +.++++++.||.|++||+++.+.+....
T Consensus       146 ~~~~~--------~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~  215 (293)
T d1p22a2         146 FDDKY--------IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLE  215 (293)
T ss_dssp             EETTE--------EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             ecccc--------cccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeec
Confidence            65532        3445679999999999999999999888888887775  5689999999999999999999988885


Q ss_pred             cccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490          340 KAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       340 ~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                       +|...+..  +++++.+|++++.||.|++||+.+...
T Consensus       216 -~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~  250 (293)
T d1p22a2         216 -GHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALD  250 (293)
T ss_dssp             -CCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTS
T ss_pred             -ccceeeee--ccccceEEEEEcCCCEEEEEECCCCcc
Confidence             78777765  556788999999999999999876543

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.9e-25  Score=190.52  Aligned_cols=257  Identities=16%  Similarity=0.191  Sum_probs=189.9

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVEN  146 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~  146 (406)
                      ++++++.++..|          .+..|+...    .+++.++.+|.+.|++++|  ++++|++++ |+.+++|++.... 
T Consensus        24 d~~~l~sgs~Dg----------~i~vWd~~~----~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~-   86 (293)
T d1p22a2          24 DDQKIVSGLRDN----------TIKIWDKNT----LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE-   86 (293)
T ss_dssp             CSSEEEEEESSS----------CEEEEESSS----CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC-
T ss_pred             cCCEEEEEeCCC----------eEEEEECCC----CcEEEEEecCCCCEeeeec--ccceeeccccccccccccccccc-
Confidence            567777654433          344556544    3578899999999999987  567888887 8888887765421 


Q ss_pred             cceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcce---EeeeeccCCceeEEEEccCCCE
Q 015490          147 TEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEI---ILNESEAHASVKDLSFSPDGKF  223 (406)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~~~~~  223 (406)
                       ...            ....... ....+.+....++++..++.+.+|+..+...   ......+...+..+.+.+  ..
T Consensus        87 -~~~------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~  150 (293)
T d1p22a2          87 -MLN------------TLIHHCE-AVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KY  150 (293)
T ss_dssp             -EEE------------EECCCCS-CEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TE
T ss_pred             -ccc------------ccccccc-ccccccccccceeecccccceeEeeccccccccccccccccccccccceecc--cc
Confidence             111            1111111 2234445667888999999999999876553   333445556777777754  57


Q ss_pred             EEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCe
Q 015490          224 LVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPV  303 (406)
Q Consensus       224 l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i  303 (406)
                      +++++.|+.+++||+++++.+..+..+.. .+..+.+++  .      .++++..|+.|++||+++.+.+.....+...+
T Consensus       151 ~~~~s~d~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~~--~------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v  221 (293)
T d1p22a2         151 IVSASGDRTIKVWNTSTCEFVRTLNGHKR-GIACLQYRD--R------LVVSGSSDNTIRLWDIECGACLRVLEGHEELV  221 (293)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEEET--T------EEEEEETTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred             cccccCCCceeeecCCCCcEEEEEccccc-ccccccCCC--C------eEEEecCCCEEEEEecccceeeeeecccceee
Confidence            88999999999999999998888775543 455565553  3      34566789999999999999999988887777


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCC---------ceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEE
Q 015490          304 SSFNVSADGKLLAVGTASGDISIIDSSS---------LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTV  371 (406)
Q Consensus       304 ~~~~~sp~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~  371 (406)
                      ..  +++++.+|++|+.||.|++||+.+         ...+..+. +|.+.|++++|+  +++|+|++.||+|++||
T Consensus       222 ~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         222 RC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV-EHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC-CCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             ee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEec-CCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            65  556788999999999999999743         33556664 899999999995  67899999999999997

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.94  E-value=1.7e-23  Score=182.56  Aligned_cols=273  Identities=19%  Similarity=0.202  Sum_probs=205.2

Q ss_pred             EEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe--cCCeEEEEEecccccc
Q 015490           71 YVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTE  148 (406)
Q Consensus        71 ~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~  148 (406)
                      ++++++.+..         .+..||.++.    +.+.++... ..+..++|+|||++|++++  ++.+++  |+..+++ 
T Consensus         3 ~~yV~~~~~~---------~v~v~D~~t~----~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v--~d~~t~~-   65 (301)
T d1l0qa2           3 FAYIANSESD---------NISVIDVTSN----KVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSI--IDTATNN-   65 (301)
T ss_dssp             EEEEEETTTT---------EEEEEETTTT----EEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEE--EETTTTE-
T ss_pred             EEEEEECCCC---------EEEEEECCCC----eEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEE--EECCCCc-
Confidence            5666654433         4666777663    345555543 5578999999999987665  555555  5554333 


Q ss_pred             eeecceeccceeeecccccCcEEEEEECCCCCEEE-EeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEE
Q 015490          149 IRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFA-AGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSL  227 (406)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~  227 (406)
                                 .+..+..+..+..+.|++++..++ ++..++.+.+|+..+++....+.. .....++.|+|+++.++..
T Consensus        66 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dg~~~~~~  133 (301)
T d1l0qa2          66 -----------VIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVT  133 (301)
T ss_dssp             -----------EEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEE
T ss_pred             -----------eeeeeeccccccccccccccccccccccccceeeecccccceeeeeccc-cccceEEEeecCCCeeeee
Confidence                       333444556678999999997655 456678999999999887766644 4567889999999977654


Q ss_pred             -eCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEE
Q 015490          228 -GNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSF  306 (406)
Q Consensus       228 -s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~  306 (406)
                       ..++.+.+|+..+++....+....  ....+.++|++..     +.......+.+.+|+....+.......+ ..+..+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  205 (301)
T d1l0qa2         134 NNGDKTVSVINTVTKAVINTVSVGR--SPKGIAVTPDGTK-----VYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGI  205 (301)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECCS--SEEEEEECTTSSE-----EEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEE
T ss_pred             eccccceeeeeccccceeeecccCC--CceEEEeeccccc-----eeeecccccccccccccceeeeeccccc-CCccee
Confidence             567889999999998888776543  3668899999885     4445566788999999888777766654 457889


Q ss_pred             EEcCCCCEEEEEeC---CCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeE-EEEECCCcEEEEEecCCcCCCCch
Q 015490          307 NVSADGKLLAVGTA---SGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRAL-VSASMDSSVRVTVIEDKKKSGGLN  382 (406)
Q Consensus       307 ~~sp~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~s~s~dg~i~iw~~~~~~~~~~~~  382 (406)
                      +++++++.+++++.   ++.|++||+.+++....+.  +...+.+++|+|||++| ++++.|++|++||+++++.+.+++
T Consensus       206 ~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~--~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         206 AVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP--VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             EECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE--CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             eccccccccccccccceeeeeeeeecCCCeEEEEEc--CCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            99999998876654   4679999999999988875  44568999999999987 577789999999999998876664

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.4e-25  Score=198.69  Aligned_cols=276  Identities=11%  Similarity=0.044  Sum_probs=186.2

Q ss_pred             CCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCC-eEEEEe-cCCeEEEEEeccc
Q 015490           68 RNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGD-GIICAL-QNSCRLFEWDEVE  145 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~~~~-~~~~~i~~~~~~~  145 (406)
                      +++++++++..|        .+.++.++.....   ..+....+|.++|.+++|+|++. ++++|+ |+.+++|++....
T Consensus        22 ~~~~L~s~s~Dg--------~v~iwd~~~~~~~---~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~   90 (342)
T d1yfqa_          22 SKSLLLITSWDG--------SLTVYKFDIQAKN---VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP   90 (342)
T ss_dssp             GGTEEEEEETTS--------EEEEEEEETTTTE---EEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS
T ss_pred             CCCEEEEEECCC--------eEEEEEccCCCcc---eEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccc
Confidence            667777664322        4556655543321   23344457999999999999765 566665 8888887655421


Q ss_pred             ccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeee----eccC--CceeEEEEcc
Q 015490          146 NTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNE----SEAH--ASVKDLSFSP  219 (406)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~----~~~~--~~i~~~~~s~  219 (406)
                        ....          ....+........+.+++..+++++.++++++||++++......    ..+.  .....+.+.+
T Consensus        91 --~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (342)
T d1yfqa_          91 --SFQA----------LTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT  158 (342)
T ss_dssp             --SEEE----------CBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE
T ss_pred             --cccc----------ccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeec
Confidence              1111          11112233455566778889999999999999998654432221    1221  1455677788


Q ss_pred             CCCEEEEEeCCCCEEEEEcCCCeeeeecc--cCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceE-----
Q 015490          220 DGKFLVSLGNRGPGRVWDLASSAVATPLA--KENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKR-----  292 (406)
Q Consensus       220 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~-----  292 (406)
                      ++..+++++.|+.|++||++..+......  ........+..+.+....     .++.++.++.+.+|+......     
T Consensus       159 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~s~dg~~~v~~~~~~~~~~~~~  233 (342)
T d1yfqa_         159 NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQE-----GYACSSIDGRVAVEFFDDQGDDYNSS  233 (342)
T ss_dssp             CSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGC-----EEEEEETTSEEEEEECCTTCCSTTCT
T ss_pred             cCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCC-----EEEeecCCCeEEEEEecCCcceeecc
Confidence            89999999999999999998765433221  122233455566555543     345567789999998764321     


Q ss_pred             ----EEE------eeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEE
Q 015490          293 ----IRT------KQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSAS  362 (406)
Q Consensus       293 ----~~~------~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s  362 (406)
                          ...      ...|...+.+++|+|++++|++|+.||.|++||+++++.+..+...|  .+..++|+|++++|++++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~--~~~~~~~s~~~~~l~~a~  311 (342)
T d1yfqa_         234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN--EDSVVKIACSDNILCLAT  311 (342)
T ss_dssp             TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS--SSEEEEEEECSSEEEEEE
T ss_pred             ccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC--CCEEEEEEeCCCEEEEEE
Confidence                111      12344678999999999999999999999999999999998875333  455678888999999999


Q ss_pred             CCCcEEEEEec
Q 015490          363 MDSSVRVTVIE  373 (406)
Q Consensus       363 ~dg~i~iw~~~  373 (406)
                      .|+.+++|...
T Consensus       312 sdd~~~~~~~~  322 (342)
T d1yfqa_         312 SDDTFKTNAAI  322 (342)
T ss_dssp             ECTHHHHCSSS
T ss_pred             cCCcEEEeeee
Confidence            99888888653

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=2.9e-24  Score=186.72  Aligned_cols=205  Identities=17%  Similarity=0.202  Sum_probs=153.8

Q ss_pred             ceeeeccccc-CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEE
Q 015490          158 EKVLSQLENV-GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVW  236 (406)
Q Consensus       158 ~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iw  236 (406)
                      .++++++.+| .+|++++|+|    |++|+.||+|++||+.++.     ..|...|.++++++++ .+++++.|+++++|
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~-----~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w   72 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQ-EYSSISWDDTLKVN   72 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE-----CCCCSCEEEEECCSTT-CCEEEETTTEEEET
T ss_pred             cceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC-----CCCCCCEEEEEecCCC-eEEEEeeccccccc
Confidence            3455566655 8999999987    8999999999999987643     4567789999998765 57889999999999


Q ss_pred             EcCCCeee-----------------------eecccCCcceE-------EEEEEEcCCCCceEEEEEEEcCCCcEEEEEe
Q 015490          237 DLASSAVA-----------------------TPLAKENDELF-------ASCRFSPLNNEDYVLYIAAITDRGASIVTWN  286 (406)
Q Consensus       237 d~~~~~~~-----------------------~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d  286 (406)
                      ++...+..                       ..+.......+       ...++++++..     +++.+..++.+++|+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~v~~~~  147 (287)
T d1pgua2          73 GITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNY-----VAVGLEEGNTIQVFK  147 (287)
T ss_dssp             TEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSE-----EEEEETTTSCEEEEE
T ss_pred             cccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcc-----eeeeccccceeeeee
Confidence            87532110                       00000001111       12345666653     444555667899999


Q ss_pred             CCCceEEEEee-ecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCC----------C
Q 015490          287 TTTWKRIRTKQ-VVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYD----------S  355 (406)
Q Consensus       287 ~~~~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~----------~  355 (406)
                      +...+....+. .+...+++++|+|++++|++|+.||.|++||+.+++.......+|...|.+++|+|+          +
T Consensus       148 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~  227 (287)
T d1pgua2         148 LSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEE  227 (287)
T ss_dssp             TTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSC
T ss_pred             ccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCC
Confidence            98766655554 356789999999999999999999999999999988776544589999999999874          4


Q ss_pred             CeEEEEECCCcEEEEEecCCcC
Q 015490          356 RALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       356 ~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      .+|++|+.|++|++||++++..
T Consensus       228 ~~l~sgs~D~~i~iw~~~~~~~  249 (287)
T d1pgua2         228 DLVATGSLDTNIFIYSVKRPMK  249 (287)
T ss_dssp             CEEEEEETTSCEEEEESSCTTC
T ss_pred             CeeEeecCCCeEEEEECCCCCe
Confidence            6899999999999999987543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=4.8e-24  Score=196.21  Aligned_cols=277  Identities=13%  Similarity=0.036  Sum_probs=179.0

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccC
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVG  168 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (406)
                      .+..||..+    .+.+.++..|. .+..++|+|||+++++++ |+.+++|+++..+......+..        ...+.+
T Consensus        43 ~v~vwD~~t----~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~--------~~~~~~  109 (426)
T d1hzua2          43 QIALVDGDS----KKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI--------GIEARS  109 (426)
T ss_dssp             EEEEEETTT----CSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC--------CSEEEE
T ss_pred             EEEEEECCC----CcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeC--------CCCCcc
Confidence            567777766    35777888774 589999999999999887 7777776655432222111110        112335


Q ss_pred             cEEEEEECCCCCEEEEe-eCCCeEEEEeCCCcceEeeeeccCCce-----------eEEEEccCCCEEEEEeC-CCCEEE
Q 015490          169 QQLALTFDSEGTIFAAG-SENGNLRVFKWPSLEIILNESEAHASV-----------KDLSFSPDGKFLVSLGN-RGPGRV  235 (406)
Q Consensus       169 ~v~~~~~s~~g~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~i-----------~~~~~s~~~~~l~s~s~-d~~i~i  235 (406)
                      .+.+++|+|||++++++ ..++.+++||..++........+...+           ..+..++++..++.... .+.+.+
T Consensus       110 ~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~  189 (426)
T d1hzua2         110 VESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLL  189 (426)
T ss_dssp             EEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             eEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence            56678889999987554 578999999999988876665544333           44555555555554433 334445


Q ss_pred             EEcCCCeeeeecccCCcceEEEEEEEcCCCCceE------------------------------------------EEEE
Q 015490          236 WDLASSAVATPLAKENDELFASCRFSPLNNEDYV------------------------------------------LYIA  273 (406)
Q Consensus       236 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------l~~~  273 (406)
                      ++.................+..+.|+|++++...                                          ....
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (426)
T d1hzua2         190 VNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWS  269 (426)
T ss_dssp             EECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEE
T ss_pred             EEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEE
Confidence            5544433222111123444667777777764000                                          0011


Q ss_pred             EEcCCCcEEEEEeCCC-------ceEEEEeeecCCCeEEEEEcCCCCEEEE-------EeCCCcEEEEECCCceEEEEee
Q 015490          274 AITDRGASIVTWNTTT-------WKRIRTKQVVREPVSSFNVSADGKLLAV-------GTASGDISIIDSSSLQVRTAVK  339 (406)
Q Consensus       274 ~~~~~~~~i~~~d~~~-------~~~~~~~~~~~~~i~~~~~sp~~~~l~~-------~~~dg~i~i~d~~~~~~~~~~~  339 (406)
                      .....++.+.+|+...       ++....+.+|...+..++|+||+++|++       +..+++|+|||+.+++...++.
T Consensus       270 ~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~  349 (426)
T d1hzua2         270 TSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVL  349 (426)
T ss_dssp             EECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEE
T ss_pred             eccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEe
Confidence            2223355555555432       3556667777778899999999999995       3457899999999987665542


Q ss_pred             --------cccccceEEEEEcCCCCeEE-EE----ECCCcEEEEEecCCcCCC
Q 015490          340 --------KAHLGIVTALAFSYDSRALV-SA----SMDSSVRVTVIEDKKKSG  379 (406)
Q Consensus       340 --------~~~~~~v~~~~~sp~~~~l~-s~----s~dg~i~iw~~~~~~~~~  379 (406)
                              ..|...|.+++|||||++++ ++    +.++.|+|||.++.+.+.
T Consensus       350 ~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~  402 (426)
T d1hzua2         350 PIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKA  402 (426)
T ss_dssp             CHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEE
T ss_pred             ccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEE
Confidence                    13456689999999999774 33    357889999999987543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=6.3e-21  Score=168.66  Aligned_cols=275  Identities=14%  Similarity=0.072  Sum_probs=191.2

Q ss_pred             EEEEEecCCCCccccceeEEec--CCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeeccccc
Q 015490           90 LLSHFDFASNSLSDQPVAELRT--DSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV  167 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (406)
                      .+..||..+.    +.+.++..  +...+.+++|+|||+++++++.....|+.||..+++....+.....      ....
T Consensus        12 ~v~v~D~~s~----~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~------~~~~   81 (337)
T d1pbyb_          12 KLVVIDTEKM----AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP------EERV   81 (337)
T ss_dssp             EEEEEETTTT----EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT------TEEE
T ss_pred             EEEEEECCCC----eEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCC------cccc
Confidence            5566777653    35555654  4456889999999999876653333455566666655544333100      0011


Q ss_pred             CcEEEEEECCCCCEEEEee------------CCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEE
Q 015490          168 GQQLALTFDSEGTIFAAGS------------ENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRV  235 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~~------------~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~i  235 (406)
                      ..+..++|+|++++++++.            .+..+.+||..+++....+.. ...+..++|+|||+++++++.  .+.+
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~--~~~~  158 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGR--DLHV  158 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESS--SEEE
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcC--Ccce
Confidence            2344689999999998875            357899999999888776654 456889999999999998865  4788


Q ss_pred             EEcCCCeeeeecccCCcceEEEEEEEcCC-------CCceE--EEEE---------EEcCCCcEEEEEeCCCceEEEE-e
Q 015490          236 WDLASSAVATPLAKENDELFASCRFSPLN-------NEDYV--LYIA---------AITDRGASIVTWNTTTWKRIRT-K  296 (406)
Q Consensus       236 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~--l~~~---------~~~~~~~~i~~~d~~~~~~~~~-~  296 (406)
                      ||..+++....+..+....  ...+.+++       .....  ....         .....++.+.+||..++..... +
T Consensus       159 ~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (337)
T d1pbyb_         159 MDPEAGTLVEDKPIQSWEA--ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV  236 (337)
T ss_dssp             EETTTTEEEEEECSTTTTT--TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE
T ss_pred             eeeecCcEEEEeecCCccc--cceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEe
Confidence            9999988776654321110  01111111       11000  0001         1123356789999988875443 4


Q ss_pred             eecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCc
Q 015490          297 QVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKK  376 (406)
Q Consensus       297 ~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~  376 (406)
                      ..+...+..+.++|++.+++.+  ++.|++||+.+++.+..+.  +...+.+++|+|||++|++++.|++|++||+++.+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~  312 (337)
T d1pbyb_         237 RIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP--LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             EECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred             cCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc--CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence            4566778899999999998766  5889999999999999885  66778999999999999999999999999999999


Q ss_pred             CCCCchH
Q 015490          377 KSGGLNL  383 (406)
Q Consensus       377 ~~~~~~~  383 (406)
                      .++++++
T Consensus       313 ~v~~i~~  319 (337)
T d1pbyb_         313 KKGQVDL  319 (337)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            8877654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=1.1e-21  Score=180.34  Aligned_cols=272  Identities=10%  Similarity=-0.005  Sum_probs=184.9

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccC
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVG  168 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (406)
                      .+..||..+    .+.+.++..| ..+..++|||||+++++++ ++.+++|+++..+......+..        ...+.+
T Consensus        43 ~v~v~D~~t----~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~--------~~~~~~  109 (432)
T d1qksa2          43 QIALIDGST----YEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI--------GSEARS  109 (432)
T ss_dssp             EEEEEETTT----CCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC--------CSEEEE
T ss_pred             EEEEEECCC----CcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEec--------CCCCCC
Confidence            567777766    3467788777 4699999999999999887 7777777655432222211111        112334


Q ss_pred             cEEEEEECCCCCEE-EEeeCCCeEEEEeCCCcceEeeeecc-----------CCceeEEEEccCCCEEE-EEeCCCCEEE
Q 015490          169 QQLALTFDSEGTIF-AAGSENGNLRVFKWPSLEIILNESEA-----------HASVKDLSFSPDGKFLV-SLGNRGPGRV  235 (406)
Q Consensus       169 ~v~~~~~s~~g~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~-----------~~~i~~~~~s~~~~~l~-s~s~d~~i~i  235 (406)
                      .+.+..|+|||++| +++..+++|++||..+++.+..+..+           ......+.++|++..++ +...++.|.+
T Consensus       110 ~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~  189 (432)
T d1qksa2         110 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL  189 (432)
T ss_dssp             EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             eEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEE
Confidence            56667889999976 67788999999999999887665433           22456788999998764 4566889999


Q ss_pred             EEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeec----------------
Q 015490          236 WDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVV----------------  299 (406)
Q Consensus       236 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~----------------  299 (406)
                      ||..+.+.........+.....++|+|++++     +++....+..+.++|..+++.+..+...                
T Consensus       190 ~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~-----~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  264 (432)
T d1qksa2         190 VDYTDLNNLKTTEISAERFLHDGGLDGSHRY-----FITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPT  264 (432)
T ss_dssp             EETTCSSEEEEEEEECCSSEEEEEECTTSCE-----EEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETT
T ss_pred             EEccCCCcceEEEEcccCccccceECCCCCE-----EEEeccccceEEEeecccceEEEEeccCccccccCcccceecCC
Confidence            9998877555443344556789999999985     4555566778888988876554332110                


Q ss_pred             ----------------------------CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCce------------------
Q 015490          300 ----------------------------REPVSSFNVSADGKLLAVGTASGDISIIDSSSLQ------------------  333 (406)
Q Consensus       300 ----------------------------~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~------------------  333 (406)
                                                  ...+....++|++..+++++.+...++|+..+..                  
T Consensus       265 ~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la  344 (432)
T d1qksa2         265 FGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMT  344 (432)
T ss_dssp             TEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCC
T ss_pred             CCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEEEechhhc
Confidence                                        0134555677777777777777666666543211                  


Q ss_pred             ------EEEEee-------cccccceEEEEEcCCCCeEEEEE-----CCCcEEEEEecCCcCCC
Q 015490          334 ------VRTAVK-------KAHLGIVTALAFSYDSRALVSAS-----MDSSVRVTVIEDKKKSG  379 (406)
Q Consensus       334 ------~~~~~~-------~~~~~~v~~~~~sp~~~~l~s~s-----~dg~i~iw~~~~~~~~~  379 (406)
                            .++.+.       ..|...|.+++|||||++++.+.     .+|.|.|||.++.+...
T Consensus       345 ~~s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~  408 (432)
T d1qksa2         345 GDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKH  408 (432)
T ss_dssp             CSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred             ccccCCceEecccccccccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEe
Confidence                  011100       13556788999999999886554     46889999999987643

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.89  E-value=1.8e-22  Score=180.61  Aligned_cols=190  Identities=17%  Similarity=0.105  Sum_probs=158.5

Q ss_pred             EEECC-CCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCC--CEEEEEcCCCeeeeeccc
Q 015490          173 LTFDS-EGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRG--PGRVWDLASSAVATPLAK  249 (406)
Q Consensus       173 ~~~s~-~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~~~  249 (406)
                      -.||| ||+++|+++ +|.|++||+.++.... + .|...|.+++|+|||++|++++.+.  .|++||.++++.....  
T Consensus         8 ~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~-~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~--   82 (360)
T d1k32a3           8 EDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE--   82 (360)
T ss_dssp             EEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECC--
T ss_pred             ccccCCCCCEEEEEE-CCeEEEEECCCCcEEE-c-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEee--
Confidence            57999 999999986 5799999998877664 3 5777999999999999998877553  7999999887765433  


Q ss_pred             CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEe----------
Q 015490          250 ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGT----------  319 (406)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~----------  319 (406)
                      .+...+.+++|+|+++.      +++++.++.+++|+..+++....+..+...+.+++|+|||++|+.+.          
T Consensus        83 ~~~~~v~~~~~spdg~~------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~  156 (360)
T d1k32a3          83 ENLGNVFAMGVDRNGKF------AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGY  156 (360)
T ss_dssp             CCCCSEEEEEECTTSSE------EEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSC
T ss_pred             CCCceEEeeeecccccc------cceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeec
Confidence            34556889999999984      45567789999999999999888888888899999999999998654          


Q ss_pred             CCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCC
Q 015490          320 ASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDK  375 (406)
Q Consensus       320 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~  375 (406)
                      .++.+++||+.+++.....  .|...+..++|+|||++|++++.|+.+++|+....
T Consensus       157 ~~~~~~v~d~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~  210 (360)
T d1k32a3         157 VMQAIHVYDMEGRKIFAAT--TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL  210 (360)
T ss_dssp             CEEEEEEEETTTTEEEECS--CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred             cccceeeeccccCceeeec--ccccccccccccCCCCEEEEEeCCCceEccccccc
Confidence            2456999999988776655  47778899999999999999999999999987543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.89  E-value=1.3e-21  Score=173.77  Aligned_cols=292  Identities=13%  Similarity=-0.015  Sum_probs=198.1

Q ss_pred             CCCCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEe-cCCCCceEEEEccCCCeEEEEecCCeEEEEEec
Q 015490           65 DIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELR-TDSDLPYRMAIHPHGDGIICALQNSCRLFEWDE  143 (406)
Q Consensus        65 ~~~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~  143 (406)
                      .+++++++++++..+          .+..||..+.    +.+.++. .|...+.+++|+|||+++++++.....|..|+.
T Consensus         4 ~~~~~~~l~~~~~~~----------~v~v~D~~t~----~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~   69 (346)
T d1jmxb_           4 LKAGHEYMIVTNYPN----------NLHVVDVASD----TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDL   69 (346)
T ss_dssp             CCTTCEEEEEEETTT----------EEEEEETTTT----EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             CCCCCcEEEEEcCCC----------EEEEEECCCC----CEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeC
Confidence            455778887765433          5667777663    4666776 466788999999999998777633335555666


Q ss_pred             ccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEee------------CCCeEEEEeCCCcceEeeeecc--C
Q 015490          144 VENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGS------------ENGNLRVFKWPSLEIILNESEA--H  209 (406)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~------------~dg~i~vwd~~~~~~~~~~~~~--~  209 (406)
                      .+++....+.....     .......+..++|+|||+++++++            .++.+.+|+..+++....+..+  .
T Consensus        70 ~t~~~~~~~~~~~~-----~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  144 (346)
T d1jmxb_          70 DTCKNTFHANLSSV-----PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP  144 (346)
T ss_dssp             TTTEEEEEEESCCS-----TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC
T ss_pred             ccCeeeeeeccccc-----ccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeecc
Confidence            65555443322100     001112345789999999888764            4678999998887765444333  2


Q ss_pred             CceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCce-------EE------------
Q 015490          210 ASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDY-------VL------------  270 (406)
Q Consensus       210 ~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l------------  270 (406)
                      ..+..+.++++++.+++   ++.+.+|++.+++....+..+..  ...+.++|++....       ..            
T Consensus       145 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (346)
T d1jmxb_         145 RQVYLMRAADDGSLYVA---GPDIYKMDVKTGKYTVALPLRNW--NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDD  219 (346)
T ss_dssp             SSCCCEEECTTSCEEEE---SSSEEEECTTTCCEEEEECSTTC--CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC---
T ss_pred             CceEEEEecCCCEEEEe---CCcceEEEccCCCEEEEEecCCC--ccceEEeccccEEEEEecCCCceEeeeeeeeeccC
Confidence            35667778888876554   24689999998887776653221  12233333332200       00            


Q ss_pred             -EEEEEcCCCcEEEEEeCCCceEEEE-eeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEE
Q 015490          271 -YIAAITDRGASIVTWNTTTWKRIRT-KQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTA  348 (406)
Q Consensus       271 -~~~~~~~~~~~i~~~d~~~~~~~~~-~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~  348 (406)
                       ........+..+.+||..++..... ...+...+..+.+++++.+++... ++.|.+||..+++.+..+.  +...+.+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~--~~~~~~~  296 (346)
T d1jmxb_         220 KQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN--LDHTYYC  296 (346)
T ss_dssp             ----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE--CSSCCCE
T ss_pred             ceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEc--CCCCEEE
Confidence             0112233456788899988775443 455667888999999988887765 4679999999999998886  4557899


Q ss_pred             EEEcCCCCeEEEEECCCcEEEEEecCCcCCCCchH
Q 015490          349 LAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLNL  383 (406)
Q Consensus       349 ~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~  383 (406)
                      ++|+|||++|++++.|+.|++||+++++.++.+++
T Consensus       297 va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~  331 (346)
T d1jmxb_         297 VAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL  331 (346)
T ss_dssp             EEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred             EEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEEC
Confidence            99999999999999999999999999998876653

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.88  E-value=1.2e-21  Score=179.91  Aligned_cols=242  Identities=11%  Similarity=0.004  Sum_probs=166.8

Q ss_pred             EEccCCC-eEEEEe--cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeC
Q 015490          120 AIHPHGD-GIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKW  196 (406)
Q Consensus       120 ~~sp~~~-~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~  196 (406)
                      .++.|.+ +++++.  ++.++||  |..++            +.+..+..+..+..++|||||+++++++.|++|++||+
T Consensus        25 ~~~~d~~~~~~V~~~~dg~v~vw--D~~t~------------~~~~~l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~   90 (426)
T d1hzua2          25 LNDLDLPNLFSVTLRDAGQIALV--DGDSK------------KIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDL   90 (426)
T ss_dssp             CSCCCGGGEEEEEETTTTEEEEE--ETTTC------------SEEEEEECCSSEEEEEECTTSCEEEEEETTSEEEEEET
T ss_pred             cccCCCCeEEEEEEcCCCEEEEE--ECCCC------------cEEEEEeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEc
Confidence            3455544 333333  5666665  55533            44445556667899999999999999999999999999


Q ss_pred             CCcceEee--e---eccCCceeEEEEccCCCEEEEE-eCCCCEEEEEcCCCeeeeecccC----------CcceEEEEEE
Q 015490          197 PSLEIILN--E---SEAHASVKDLSFSPDGKFLVSL-GNRGPGRVWDLASSAVATPLAKE----------NDELFASCRF  260 (406)
Q Consensus       197 ~~~~~~~~--~---~~~~~~i~~~~~s~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~~----------~~~~~~~~~~  260 (406)
                      .+++....  +   .+|...+.+++|+|||++++++ ..++.+++||..++.....+..+          .......+.+
T Consensus        91 ~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  170 (426)
T d1hzua2          91 WAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIA  170 (426)
T ss_dssp             TSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEE
T ss_pred             cCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEE
Confidence            98874332  2   2344456778889999987655 47899999999998877655432          2223445677


Q ss_pred             EcCCCCceEEEEEEEcCCCcEEEEEeCCCceE-EEEeeecCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCceEEEEe
Q 015490          261 SPLNNEDYVLYIAAITDRGASIVTWNTTTWKR-IRTKQVVREPVSSFNVSADGKLLAVGTA-SGDISIIDSSSLQVRTAV  338 (406)
Q Consensus       261 ~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~~~~~~~~~  338 (406)
                      ++++..     +.......+.+.+++...... ......+...+..+.|+|++++++++.. +..+.+++..+++.....
T Consensus       171 s~d~~~-----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~  245 (426)
T d1hzua2         171 SHEHPE-----FIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALV  245 (426)
T ss_dssp             CSSSSE-----EEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEE
T ss_pred             CCCCCE-----EEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEe
Confidence            777764     333445567777777665543 2233455677899999999998887765 455677776654433221


Q ss_pred             e-----------------------------------------------------cccccceEEEEEcCCCCeEEE-----
Q 015490          339 K-----------------------------------------------------KAHLGIVTALAFSYDSRALVS-----  360 (406)
Q Consensus       339 ~-----------------------------------------------------~~~~~~v~~~~~sp~~~~l~s-----  360 (406)
                      .                                                     .+|...+..++|+||+++|++     
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~  325 (426)
T d1hzua2         246 DVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFN  325 (426)
T ss_dssp             ECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTC
T ss_pred             ccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCC
Confidence            1                                                     256777899999999999994     


Q ss_pred             --EECCCcEEEEEecCCcCCCC
Q 015490          361 --ASMDSSVRVTVIEDKKKSGG  380 (406)
Q Consensus       361 --~s~dg~i~iw~~~~~~~~~~  380 (406)
                        ++.|++|+|||+++++...+
T Consensus       326 ~s~~~~~tv~vwd~~t~~~~~~  347 (426)
T d1hzua2         326 PDARISQSVAVFDLKNLDAKYQ  347 (426)
T ss_dssp             SSHHHHTCEEEEETTCTTSCCE
T ss_pred             CCcccCCEEEEEECCCCCcCeE
Confidence              55688999999999887654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=3e-20  Score=170.51  Aligned_cols=212  Identities=9%  Similarity=0.001  Sum_probs=152.0

Q ss_pred             ceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceE--eeee---ccCCceeEEEEccCCCEE-EEEeCCC
Q 015490          158 EKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEII--LNES---EAHASVKDLSFSPDGKFL-VSLGNRG  231 (406)
Q Consensus       158 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~--~~~~---~~~~~i~~~~~s~~~~~l-~s~s~d~  231 (406)
                      .+++..+..+..+..++|||||+++++++.|++|++||+.+++..  ..+.   .+...+.+..|+|||++| ++++.++
T Consensus        52 ~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~  131 (432)
T d1qksa2          52 YEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPP  131 (432)
T ss_dssp             CCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETT
T ss_pred             CcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCC
Confidence            334444555567899999999999999999999999999887632  2222   333456667788999986 6677899


Q ss_pred             CEEEEEcCCCeeeeecccC----------CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEee-ecC
Q 015490          232 PGRVWDLASSAVATPLAKE----------NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQ-VVR  300 (406)
Q Consensus       232 ~i~iwd~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~  300 (406)
                      .+++||..+++.+..+..+          .......+.++|++..     +.++...++.|.+||..+.+...... .+.
T Consensus       132 ~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~-----~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g  206 (432)
T d1qksa2         132 QYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE-----FIVNVKETGKILLVDYTDLNNLKTTEISAE  206 (432)
T ss_dssp             EEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSE-----EEEEETTTTEEEEEETTCSSEEEEEEEECC
T ss_pred             eEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCE-----EEEEEccCCeEEEEEccCCCcceEEEEccc
Confidence            9999999999887765432          2334567889999885     44556778999999998877554433 234


Q ss_pred             CCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCceEEEEeec---------------------------------------
Q 015490          301 EPVSSFNVSADGKLLAVGTA-SGDISIIDSSSLQVRTAVKK---------------------------------------  340 (406)
Q Consensus       301 ~~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~---------------------------------------  340 (406)
                      ..+..+.|+|+|+++++++. ++.+.++|..+++....+..                                       
T Consensus       207 ~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~  286 (432)
T d1qksa2         207 RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDP  286 (432)
T ss_dssp             SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             CccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccc
Confidence            56789999999998888776 55788999887766544320                                       


Q ss_pred             ----ccccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490          341 ----AHLGIVTALAFSYDSRALVSASMDSSVRVTVIED  374 (406)
Q Consensus       341 ----~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~  374 (406)
                          .|...+....++|++..+++++.+.+.++|...+
T Consensus       287 ~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~  324 (432)
T d1qksa2         287 EGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDAT  324 (432)
T ss_dssp             TTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECT
T ss_pred             ccccccccEEEEEEEcCCCCeEEEEecCCccceeeccc
Confidence                1222345556666766677777777777776544

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.86  E-value=2.8e-18  Score=149.04  Aligned_cols=242  Identities=19%  Similarity=0.199  Sum_probs=180.4

Q ss_pred             CCCCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEecc
Q 015490           65 DIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEV  144 (406)
Q Consensus        65 ~~~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~  144 (406)
                      .+++++++++++.++.         .+..||..+.    +.+.++..|. .+..++|++++..+++++.....+..++..
T Consensus        39 ~spdG~~l~v~~~~~~---------~i~v~d~~t~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (301)
T d1l0qa2          39 ISPDGTKVYVANAHSN---------DVSIIDTATN----NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTT  104 (301)
T ss_dssp             ECTTSSEEEEEEGGGT---------EEEEEETTTT----EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             EeCCCCEEEEEECCCC---------EEEEEECCCC----ceeeeeeccc-cccccccccccccccccccccceeeecccc
Confidence            3447777776654332         5666777653    4566777665 468999999999888877444455556655


Q ss_pred             cccceeecceeccceeeecccccCcEEEEEECCCCCEEE-EeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCE
Q 015490          145 ENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFA-AGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKF  223 (406)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~  223 (406)
                      ++            +....+.......++.|+|+++.++ ++..++.+.+|+..++.....+..+ ..+..++++|+++.
T Consensus       105 ~~------------~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  171 (301)
T d1l0qa2         105 SN------------TVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTK  171 (301)
T ss_dssp             TT------------EEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSE
T ss_pred             cc------------eeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEeeccccc
Confidence            33            3334445667788999999998765 5556889999999998877666543 45789999999998


Q ss_pred             EEEEeCC-CCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCC
Q 015490          224 LVSLGNR-GPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREP  302 (406)
Q Consensus       224 l~s~s~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~  302 (406)
                      +++++.+ +.+.+|+....+....+...  .....++|++++..   +++......++.|++||..+++.+..+..+ ..
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~---~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~  245 (301)
T d1l0qa2         172 VYVANFDSMSISVIDTVTNSVIDTVKVE--AAPSGIAVNPEGTK---AYVTNVDKYFNTVSMIDTGTNKITARIPVG-PD  245 (301)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECS--SEEEEEEECTTSSE---EEEEEECSSCCEEEEEETTTTEEEEEEECC-SS
T ss_pred             eeeecccccccccccccceeeeeccccc--CCcceeeccccccc---cccccccceeeeeeeeecCCCeEEEEEcCC-CC
Confidence            8888765 56777887777666655433  34668899999985   555556667789999999999988887755 56


Q ss_pred             eEEEEEcCCCCEEE-EEeCCCcEEEEECCCceEEEEee
Q 015490          303 VSSFNVSADGKLLA-VGTASGDISIIDSSSLQVRTAVK  339 (406)
Q Consensus       303 i~~~~~sp~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~  339 (406)
                      +.+++|+|||++|+ +++.++.|++||+.+++.+.++.
T Consensus       246 ~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         246 PAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             EEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            79999999999874 66678999999999999988875

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.86  E-value=2.5e-19  Score=161.08  Aligned_cols=249  Identities=9%  Similarity=-0.038  Sum_probs=175.8

Q ss_pred             EecCCCCceEEEEccCCCeEEEEe----cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEE
Q 015490          109 LRTDSDLPYRMAIHPHGDGIICAL----QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAA  184 (406)
Q Consensus       109 ~~~h~~~v~~~~~sp~~~~l~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  184 (406)
                      ...+..++.+++++|||+.+++..    +...++|.||..+++.+..+            ... ....++|+|||++|++
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~------------~~~-~~~~~a~SpDG~~l~v   82 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHV------------NGG-FLPNPVAAHSGSEFAL   82 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEE------------eCC-CCccEEEcCCCCEEEE
Confidence            345788899999999999988753    45568999998766554432            222 2236899999999988


Q ss_pred             ee----------CCCeEEEEeCCCcceEeeeeccCCc-------eeEEEEccCCCEEEEEe--CCCCEEEEEcCCCeeee
Q 015490          185 GS----------ENGNLRVFKWPSLEIILNESEAHAS-------VKDLSFSPDGKFLVSLG--NRGPGRVWDLASSAVAT  245 (406)
Q Consensus       185 ~~----------~dg~i~vwd~~~~~~~~~~~~~~~~-------i~~~~~s~~~~~l~s~s--~d~~i~iwd~~~~~~~~  245 (406)
                      ++          .++.|.+||..+++.+..+..+...       ...+.|+++++.++...  .++.+.+|+....+...
T Consensus        83 a~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~  162 (373)
T d2madh_          83 ASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQ  162 (373)
T ss_pred             EeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEE
Confidence            74          4578999999999988776655442       25578999998766654  45678999988776655


Q ss_pred             ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeec--------------------------
Q 015490          246 PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVV--------------------------  299 (406)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--------------------------  299 (406)
                      ....     ..++.++|+++.     ..++...++.+.+||...++.......+                          
T Consensus       163 ~~~~-----~~~~~~s~~g~~-----~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (373)
T d2madh_         163 LLSS-----PTCYHIHPGAPS-----TFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY  232 (373)
T ss_pred             Eecc-----ceeEEEecCCCc-----EEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecC
Confidence            4432     346778888875     3344556777888876654332211100                          


Q ss_pred             ---------------------------------CCCeEEEEEcCCCCEEE----------EEeCCCcEEEEECCCceEEE
Q 015490          300 ---------------------------------REPVSSFNVSADGKLLA----------VGTASGDISIIDSSSLQVRT  336 (406)
Q Consensus       300 ---------------------------------~~~i~~~~~sp~~~~l~----------~~~~dg~i~i~d~~~~~~~~  336 (406)
                                                       ......+++++++..++          ....++.+.+||..+++.+.
T Consensus       233 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~  312 (373)
T d2madh_         233 SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS  312 (373)
T ss_pred             CceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEE
Confidence                                             00112345556655444          34456778999999999988


Q ss_pred             EeecccccceEEEEEcCCCCe--EEEEECCCcEEEEEecCCcCCCCch
Q 015490          337 AVKKAHLGIVTALAFSYDSRA--LVSASMDSSVRVTVIEDKKKSGGLN  382 (406)
Q Consensus       337 ~~~~~~~~~v~~~~~sp~~~~--l~s~s~dg~i~iw~~~~~~~~~~~~  382 (406)
                      .+.  +...+.+++|+|||+.  +++++.|++|++||+.+++.++.++
T Consensus       313 ~~~--~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~  358 (373)
T d2madh_         313 QIS--LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTV  358 (373)
T ss_pred             Eec--CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEC
Confidence            875  6677899999999984  4678899999999999999877664

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=5.8e-19  Score=155.82  Aligned_cols=279  Identities=11%  Similarity=0.107  Sum_probs=181.5

Q ss_pred             CcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe--cCCeEEEEEecccc
Q 015490           69 NYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVEN  146 (406)
Q Consensus        69 ~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~  146 (406)
                      ++.+++++..+       +.+.++.++....    ..+.....|.+.|.+|+|+|||++|++++  ++.+++|+++....
T Consensus         3 ~~~v~v~~~~~-------~~I~v~~~~~~~~----l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~   71 (333)
T d1ri6a_           3 KQTVYIASPES-------QQIHVWNLNHEGA----LTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG   71 (333)
T ss_dssp             EEEEEEEEGGG-------TEEEEEEECTTSC----EEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred             ceEEEEECCCC-------CcEEEEEEcCCCC----eEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCC
Confidence            34566665433       3556666654431    12233346889999999999999997776  67788888775432


Q ss_pred             cceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeC-CCeEEEEeCCCcceEee--eeccCCceeEEEEccCCCE
Q 015490          147 TEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE-NGNLRVFKWPSLEIILN--ESEAHASVKDLSFSPDGKF  223 (406)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~vwd~~~~~~~~~--~~~~~~~i~~~~~s~~~~~  223 (406)
                      ..          ...........+..++|+|||++|++++. ++.|.+|+.........  ...+...+.++.++|++++
T Consensus        72 ~~----------~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~  141 (333)
T d1ri6a_          72 AL----------TFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRT  141 (333)
T ss_dssp             CE----------EEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSE
T ss_pred             cE----------EEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeeccee
Confidence            21          11112223455678999999999998875 67899998876554333  3344457889999999998


Q ss_pred             EEEEeC-CCCEEEEEcCCCeeee-----ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc--e--EE
Q 015490          224 LVSLGN-RGPGRVWDLASSAVAT-----PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW--K--RI  293 (406)
Q Consensus       224 l~s~s~-d~~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~--~--~~  293 (406)
                      +++++. +..+.+|+........     ............++|++++..     ........+...+++....  .  ..
T Consensus       142 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~  216 (333)
T d1ri6a_         142 LWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQY-----AYCVNELNSSVDVWELKDPHGNIECV  216 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSE-----EEEEETTTTEEEEEESSCTTSCCEEE
T ss_pred             eeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEecccee-----EEeeccccCceEEEeecccccceeee
Confidence            888774 4568999987643222     112223344678999999884     3444455666667665432  1  12


Q ss_pred             EEeee------cCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCceEEEEee--cccccceEEEEEcCCCCeEEEEE-C
Q 015490          294 RTKQV------VREPVSSFNVSADGKLLAVGTA-SGDISIIDSSSLQVRTAVK--KAHLGIVTALAFSYDSRALVSAS-M  363 (406)
Q Consensus       294 ~~~~~------~~~~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~s~s-~  363 (406)
                      .....      .......+++++++++++.... ++.+.+|++..........  ..+...+.+++|+|||++|++++ .
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~  296 (333)
T d1ri6a_         217 QTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQK  296 (333)
T ss_dssp             EEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTT
T ss_pred             eeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECC
Confidence            22211      1245678899999997776654 7789999886543322221  12445678999999999987765 4


Q ss_pred             CCcEEEEEec
Q 015490          364 DSSVRVTVIE  373 (406)
Q Consensus       364 dg~i~iw~~~  373 (406)
                      ++.|++|++.
T Consensus       297 ~~~v~v~~id  306 (333)
T d1ri6a_         297 SHHISVYEIV  306 (333)
T ss_dssp             TCEEEEEEEE
T ss_pred             CCeEEEEEEE
Confidence            6889999764

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.79  E-value=3.7e-17  Score=145.51  Aligned_cols=290  Identities=7%  Similarity=-0.041  Sum_probs=183.7

Q ss_pred             cCCCCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEec---------C
Q 015490           64 DDIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQ---------N  134 (406)
Q Consensus        64 ~~~~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~---------~  134 (406)
                      ..+|+++.+++...+...     ..-.++.||..+.    +.+.++..+..  ..++|+|||++|++++.         .
T Consensus         8 a~spdg~~~~v~~~~~~~-----~~~~v~v~D~~tg----~~~~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~   76 (355)
T d2bbkh_           8 APAPDARRVYVNDPAHFA-----AVTQQFVIDGEAG----RVIGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGER   76 (355)
T ss_dssp             CCCCCTTEEEEEECGGGC-----SSEEEEEEETTTT----EEEEEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEE
T ss_pred             eeCCCCCEEEEEecccCC-----CcCeEEEEECCCC----cEEEEEECCCC--CceEEcCCCCEEEEEeCCCccccccCC
Confidence            335677777765432211     1236777887763    45666665543  47999999998886531         2


Q ss_pred             CeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEee--CCCeEEEEeCCCcceEeeeeccCC--
Q 015490          135 SCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGS--ENGNLRVFKWPSLEIILNESEAHA--  210 (406)
Q Consensus       135 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~--  210 (406)
                      ...|+.||..+++....+...... .   .........++|++++++++++.  .+..+.+|+..+++....+..+..  
T Consensus        77 d~~v~v~D~~t~~~~~~~~~~~~~-~---~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (355)
T d2bbkh_          77 TDYVEVFDPVTLLPTADIELPDAP-R---FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH  152 (355)
T ss_dssp             EEEEEEECTTTCCEEEEEEETTCC-C---CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEE
T ss_pred             CCEEEEEECCCCCEEEEEecCCcc-e---eecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcce
Confidence            235666777766655444331110 0   11112334579999999887764  467899999999987766654332  


Q ss_pred             -----ceeEEEEccCCCEEEEEe-CCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEE
Q 015490          211 -----SVKDLSFSPDGKFLVSLG-NRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVT  284 (406)
Q Consensus       211 -----~i~~~~~s~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~  284 (406)
                           ....+.+++|++.++... .++.+.+++.......      ....+....+.+++..      ++....++.+++
T Consensus       153 ~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~------~~~~~~~~~~~v  220 (355)
T d2bbkh_         153 IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE------DEFLINHPAYSQKAGR------LVWPTYTGKIHQ  220 (355)
T ss_dssp             EEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT------TSCBCSCCEEETTTTE------EEEEBTTSEEEE
T ss_pred             EeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccce------ecceeeeccccCCCCe------EEEecCCCeEEE
Confidence                 223456677766655443 3444555554433221      1222334566777663      234467899999


Q ss_pred             EeCCCceEEEE--eeec----------CCCeEEEEEcCCCCEEEEEeCC----------CcEEEEECCCceEEEEeeccc
Q 015490          285 WNTTTWKRIRT--KQVV----------REPVSSFNVSADGKLLAVGTAS----------GDISIIDSSSLQVRTAVKKAH  342 (406)
Q Consensus       285 ~d~~~~~~~~~--~~~~----------~~~i~~~~~sp~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~  342 (406)
                      |++..++....  ...+          ......+++++++..++....+          ..|.+||..+++.+..+.  +
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~--~  298 (355)
T d2bbkh_         221 IDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE--M  298 (355)
T ss_dssp             EECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE--E
T ss_pred             EecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec--C
Confidence            99987654221  1111          1223458899999988876543          369999999999988885  4


Q ss_pred             ccceEEEEEcCCCCe--EEEEECCCcEEEEEecCCcCCCCch
Q 015490          343 LGIVTALAFSYDSRA--LVSASMDSSVRVTVIEDKKKSGGLN  382 (406)
Q Consensus       343 ~~~v~~~~~sp~~~~--l~s~s~dg~i~iw~~~~~~~~~~~~  382 (406)
                      ...+.+++|+|||+.  +++++.|++|++||+++++.++.++
T Consensus       299 ~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~  340 (355)
T d2bbkh_         299 GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN  340 (355)
T ss_dssp             EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEe
Confidence            566889999999973  4567789999999999999876553

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.74  E-value=3.7e-16  Score=137.51  Aligned_cols=238  Identities=15%  Similarity=0.159  Sum_probs=161.0

Q ss_pred             CCCCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCC-----CCceEEEEccCCCeEEEEec------
Q 015490           65 DIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDS-----DLPYRMAIHPHGDGIICALQ------  133 (406)
Q Consensus        65 ~~~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~v~~~~~sp~~~~l~~~~~------  133 (406)
                      .+++++++++++....         .+..||..+.    +.+..+..+.     ..+..++|+|++++++++..      
T Consensus        41 ~spDg~~l~v~~~~~~---------~v~v~D~~t~----~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~  107 (337)
T d1pbyb_          41 VAPGGRIAYATVNKSE---------SLVKIDLVTG----ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLEL  107 (337)
T ss_dssp             ECTTSSEEEEEETTTT---------EEEEEETTTC----CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECS
T ss_pred             ECCCCCEEEEEECCCC---------eEEEEECCCC----cEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCccee
Confidence            4457788777654332         5666776653    3444444432     34678999999999987752      


Q ss_pred             -----CCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeecc
Q 015490          134 -----NSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEA  208 (406)
Q Consensus       134 -----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  208 (406)
                           ....+..++..            .......+.....+.+++|+|||+++++++.  .+.+||..+++....+..+
T Consensus       108 ~~~~~~~~~~~~~d~~------------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~  173 (337)
T d1pbyb_         108 THFEVQPTRVALYDAE------------TLSRRKAFEAPRQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQ  173 (337)
T ss_dssp             SCEEECCCEEEEEETT------------TTEEEEEEECCSSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECST
T ss_pred             eeccccccceeecccc------------CCeEEEeccccCCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecC
Confidence                 12233344443            2333444455667888999999999998864  4788999988877655433


Q ss_pred             CCceeEEEEccCCCE------------------------EEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCC
Q 015490          209 HASVKDLSFSPDGKF------------------------LVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLN  264 (406)
Q Consensus       209 ~~~i~~~~~s~~~~~------------------------l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (406)
                      .. .....+++++..                        ....+.++.+.+||..++........+.......+.+++++
T Consensus       174 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (337)
T d1pbyb_         174 SW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK  252 (337)
T ss_dssp             TT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTS
T ss_pred             Cc-cccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccc
Confidence            22 111122222111                        11112244688999988876655444455567788899988


Q ss_pred             CCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEee
Q 015490          265 NEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVK  339 (406)
Q Consensus       265 ~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  339 (406)
                      ..     +..   .++.|++||+.+++.+..+.. ...+.+++|+|||++|++++.+++|++||..+++.+.++.
T Consensus       253 ~~-----~~~---~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~  318 (337)
T d1pbyb_         253 TR-----AFG---AYNVLESFDLEKNASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             SE-----EEE---EESEEEEEETTTTEEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             eE-----EEE---ccccEEEEECCCCcEEEEEcC-CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEE
Confidence            74     222   258899999999999888764 4667899999999999999999999999999999998886

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.74  E-value=9.2e-17  Score=144.04  Aligned_cols=254  Identities=8%  Similarity=-0.071  Sum_probs=165.6

Q ss_pred             CCCCceEEEEccCCCeEEEE--e--cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEee-
Q 015490          112 DSDLPYRMAIHPHGDGIICA--L--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGS-  186 (406)
Q Consensus       112 h~~~v~~~~~sp~~~~l~~~--~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-  186 (406)
                      +.+....++..++++.....  .  +++.++|.+|..+++....+            .... ...++|+|||+.|++.+ 
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~------------~~~~-~~~~a~spDg~~i~~~~~   84 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHS------------LGAF-LSLAVAGHSGSDFALAST   84 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEE------------EECT-TCEEEECTTSSCEEEEEE
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEE------------eCCC-CCcceECCCCCEEEEEcc
Confidence            44555666778888864332  2  67889999998765544332            2221 22589999999888754 


Q ss_pred             ---------CCCeEEEEeCCCcceEeeeeccCC-------ceeEEEEccCCCEEEEEe-CCCCEEEEEcCCCeeeeeccc
Q 015490          187 ---------ENGNLRVFKWPSLEIILNESEAHA-------SVKDLSFSPDGKFLVSLG-NRGPGRVWDLASSAVATPLAK  249 (406)
Q Consensus       187 ---------~dg~i~vwd~~~~~~~~~~~~~~~-------~i~~~~~s~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~  249 (406)
                               .|+.|++||..+++....+..+..       ....++|+|||++|+++. .++.+.+||+.+++....+..
T Consensus        85 ~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~  164 (368)
T d1mdah_          85 SFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKS  164 (368)
T ss_dssp             EETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEEC
T ss_pred             cCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeec
Confidence                     477899999999998877654332       235699999999998876 578999999999988776654


Q ss_pred             CCcce------EEEEEEEcCCCCceEEEEEE---------------------------------EcCCCcEEEEEeCCCc
Q 015490          250 ENDEL------FASCRFSPLNNEDYVLYIAA---------------------------------ITDRGASIVTWNTTTW  290 (406)
Q Consensus       250 ~~~~~------~~~~~~~~~~~~~~~l~~~~---------------------------------~~~~~~~i~~~d~~~~  290 (406)
                      +....      ...+.+++++..   +++..                                 ....++.+++++....
T Consensus       165 ~~~~~~~~~~~~~~v~~~~Dg~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~  241 (368)
T d1mdah_         165 ASCFHIHPGAAATHYLGSCPASL---AASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAA  241 (368)
T ss_dssp             SSCCCCEEEETTEEECCCCTTSC---EEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSS
T ss_pred             cCcceEccCCCceEEEEcCCCCE---EEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCC
Confidence            32211      123444555542   11100                                 0011223334444333


Q ss_pred             eEEEEee--ec----------CCCeEEEEEcCCCCEEEEEeCC---------CcEEEEECCCceEEEEeecccccceEEE
Q 015490          291 KRIRTKQ--VV----------REPVSSFNVSADGKLLAVGTAS---------GDISIIDSSSLQVRTAVKKAHLGIVTAL  349 (406)
Q Consensus       291 ~~~~~~~--~~----------~~~i~~~~~sp~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~v~~~  349 (406)
                      .......  ..          ......++++|++..+++...+         ..|.+||..+++.+..+.  +...+.++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~--~~~~~~~~  319 (368)
T d1mdah_         242 GATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS--NGHDSDAI  319 (368)
T ss_dssp             CCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE--EEEEECEE
T ss_pred             ceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec--CCCceeEE
Confidence            2221111  00          0112357888888877665432         359999999999988875  55678899


Q ss_pred             EEcCCCCe--EEEEECCCcEEEEEecCCcCCCCchH
Q 015490          350 AFSYDSRA--LVSASMDSSVRVTVIEDKKKSGGLNL  383 (406)
Q Consensus       350 ~~sp~~~~--l~s~s~dg~i~iw~~~~~~~~~~~~~  383 (406)
                      +|+|||+.  ++++..|+.|++||..+++.++.+++
T Consensus       320 a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~  355 (368)
T d1mdah_         320 IAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             EECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             EECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC
Confidence            99999973  45667889999999999998877653

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.73  E-value=3.6e-17  Score=144.64  Aligned_cols=240  Identities=11%  Similarity=0.003  Sum_probs=164.8

Q ss_pred             EEEccCCCeEEEEe-cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEE-EeeCCCeEEEEeC
Q 015490          119 MAIHPHGDGIICAL-QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFA-AGSENGNLRVFKW  196 (406)
Q Consensus       119 ~~~sp~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~~~dg~i~vwd~  196 (406)
                      ++|+++++++++++ ++.+.+|+  ..+++....+.+          .+...+.+++|+|||++++ ++..++.|++||+
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D--~~t~~~~~t~~~----------~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~   69 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVD--VASDTVYKSCVM----------PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDL   69 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEE--TTTTEEEEEEEC----------SSCCSSCEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEE--CCCCCEEEEEEc----------CCCCCcceEEECCCCCEEEEEECCCCcEEEEeC
Confidence            47899999999987 67666654  444433333222          2345578999999999874 5567899999999


Q ss_pred             CCcceEeeeeccCC------ceeEEEEccCCCEEEEEe------------CCCCEEEEEcCCCeeeeecccCC-cceEEE
Q 015490          197 PSLEIILNESEAHA------SVKDLSFSPDGKFLVSLG------------NRGPGRVWDLASSAVATPLAKEN-DELFAS  257 (406)
Q Consensus       197 ~~~~~~~~~~~~~~------~i~~~~~s~~~~~l~s~s------------~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~  257 (406)
                      .+++.+..+.....      .+..++|+|||+++++++            .+..+.+||..+++....+..+. ...+..
T Consensus        70 ~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  149 (346)
T d1jmxb_          70 DTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYL  149 (346)
T ss_dssp             TTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCC
T ss_pred             ccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEE
Confidence            99988766543322      467899999999988765            36778999988877655443221 122334


Q ss_pred             EEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCE-----------------------
Q 015490          258 CRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKL-----------------------  314 (406)
Q Consensus       258 ~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~-----------------------  314 (406)
                      +.+++++.      +.+.   +..+.+||..+++.+..+..+. ....+.++|++..                       
T Consensus       150 ~~~~~~~~------~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (346)
T d1jmxb_         150 MRAADDGS------LYVA---GPDIYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDD  219 (346)
T ss_dssp             EEECTTSC------EEEE---SSSEEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC---
T ss_pred             EEecCCCE------EEEe---CCcceEEEccCCCEEEEEecCC-CccceEEeccccEEEEEecCCCceEeeeeeeeeccC
Confidence            55666654      2222   3558899999988888776543 2334445554432                       


Q ss_pred             ---EEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490          315 ---LAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       315 ---l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~  381 (406)
                         ++++..++.+.+||+.++.........|...+..+.+++++.+++.... +.|++||+.+++.+..+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~  288 (346)
T d1jmxb_         220 KQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAA  288 (346)
T ss_dssp             ----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEE
T ss_pred             ceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEE
Confidence               2333345668889998887766655568888999999999988887664 57999999988765443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.71  E-value=4.5e-14  Score=126.18  Aligned_cols=272  Identities=9%  Similarity=-0.002  Sum_probs=169.9

Q ss_pred             CCCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEecC---------Ce
Q 015490           66 IRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQN---------SC  136 (406)
Q Consensus        66 ~~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~---------~~  136 (406)
                      +|+++.+++...+..     .....++.+|..+.    +.+.++..+...  .++|+|||++++++...         ..
T Consensus        29 spdg~~~~~~~~~~~-----~~~~~v~v~D~~tg----~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~   97 (373)
T d2madh_          29 GADGRRSYINLPAHH-----SAIIQQWVLDAGSG----SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTD   97 (373)
T ss_pred             CCCCCEEEEEccccc-----CCCceEEEEECCCC----CEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccce
Confidence            446666666532221     12236777787663    456667666543  79999999999887511         12


Q ss_pred             EEEEEecccccceeeccee-----------------ccceee--e-----------------cccccCcEEEEEECCCCC
Q 015490          137 RLFEWDEVENTEIRRLGVK-----------------ISEKVL--S-----------------QLENVGQQLALTFDSEGT  180 (406)
Q Consensus       137 ~i~~~~~~~~~~~~~~~~~-----------------~~~~~~--~-----------------~~~~~~~v~~~~~s~~g~  180 (406)
                      .|+.||..+++....+...                 +..+.+  .                 ...+.....++.++|+|+
T Consensus        98 ~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~  177 (373)
T d2madh_          98 YVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGAP  177 (373)
T ss_pred             EEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEecCCC
Confidence            3444555555443222111                 011100  0                 011123345788999886


Q ss_pred             E-EEEeeCCCeEEEEeCCCcceEeeeeccCC------ceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecc--cC-
Q 015490          181 I-FAAGSENGNLRVFKWPSLEIILNESEAHA------SVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLA--KE-  250 (406)
Q Consensus       181 ~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~------~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--~~-  250 (406)
                      . +++.+.|+.+.+|+...++.......+..      ....+.+++++. ++..+.++.+.+|+..++.......  .. 
T Consensus       178 ~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  256 (373)
T d2madh_         178 STFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGATNKAPIDALS  256 (373)
T ss_pred             cEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce-EEEecCCceEEEEEcCCCeEEEEEeecccc
Confidence            4 46778899999999988776654432211      234456666654 5566778899999988765432111  11 


Q ss_pred             --------CcceEEEEEEEcCCCCceEEE-------EEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCE-
Q 015490          251 --------NDELFASCRFSPLNNEDYVLY-------IAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKL-  314 (406)
Q Consensus       251 --------~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~-  314 (406)
                              .......+++++++..   ++       .......++.+.+||..+++.+..+. +...+..++|+|||+. 
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~  332 (373)
T d2madh_         257 GGRKADTWRPGGWQQVAYLKSSDG---IYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPD  332 (373)
T ss_pred             CcEEeeeeccCcceeeEEecCCCe---EEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEE
Confidence                    0112334567777664   11       12334556789999999999888776 4467899999999984 


Q ss_pred             -EEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCC
Q 015490          315 -LAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYD  354 (406)
Q Consensus       315 -l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~  354 (406)
                       +++++.|+.|++||+.+++.+..+. .+....+.+++.++
T Consensus       333 l~vt~~~d~~v~v~D~~tg~~~~~~~-~~g~~P~~l~~~~~  372 (373)
T d2madh_         333 LYALSAGTEVLHIYDAGAGDQDQSTV-ELGSGPQVLSVMNE  372 (373)
T ss_pred             EEEEeCCCCeEEEEECCCCCEEEEEC-CCCCCCcEEEEecC
Confidence             4678889999999999999999996 56666777776543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=5.7e-15  Score=129.71  Aligned_cols=229  Identities=10%  Similarity=0.101  Sum_probs=155.0

Q ss_pred             cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEee-CCCeEEEEeCCCcceEeee---ecc
Q 015490          133 QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGS-ENGNLRVFKWPSLEIILNE---SEA  208 (406)
Q Consensus       133 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~dg~i~vwd~~~~~~~~~~---~~~  208 (406)
                      ++++++|+++...           ....++.+.+.+.+..++|||||++|++++ .|+.|++|++.........   ...
T Consensus        13 ~~~I~v~~~~~~~-----------~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~   81 (333)
T d1ri6a_          13 SQQIHVWNLNHEG-----------ALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL   81 (333)
T ss_dssp             GTEEEEEEECTTS-----------CEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC
T ss_pred             CCcEEEEEEcCCC-----------CeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeeccc
Confidence            8888898887532           123344556778899999999999886554 5899999999765433222   223


Q ss_pred             CCceeEEEEccCCCEEEEEeC-CCCEEEEEcCCCeeeeecc-cCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEe
Q 015490          209 HASVKDLSFSPDGKFLVSLGN-RGPGRVWDLASSAVATPLA-KENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWN  286 (406)
Q Consensus       209 ~~~i~~~~~s~~~~~l~s~s~-d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d  286 (406)
                      ...+..++|+|||++|++++. ++.+.+|+........... ..+...+.++.++|+++.     +......+..+.+|+
T Consensus        82 ~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~-----~~~~~~~~~~i~~~~  156 (333)
T d1ri6a_          82 PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRT-----LWVPALKQDRICLFT  156 (333)
T ss_dssp             SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSE-----EEEEEGGGTEEEEEE
T ss_pred             CCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeeccee-----eeccccccceeeEEE
Confidence            346788999999999998875 6689999887765544332 123334667899999985     445556677899999


Q ss_pred             CCCceEEEEe------eecCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCce----EEEEee---c--ccccceEEEE
Q 015490          287 TTTWKRIRTK------QVVREPVSSFNVSADGKLLAVGTA-SGDISIIDSSSLQ----VRTAVK---K--AHLGIVTALA  350 (406)
Q Consensus       287 ~~~~~~~~~~------~~~~~~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~~~~----~~~~~~---~--~~~~~v~~~~  350 (406)
                      ..........      .........++|++++.+++.... .+...+++.....    ......   .  ........++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (333)
T d1ri6a_         157 VSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIH  236 (333)
T ss_dssp             ECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEE
T ss_pred             eccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEE
Confidence            8664322211      122345688999999998877654 5667888764321    111221   0  1234467789


Q ss_pred             EcCCCCeEEEE-ECCCcEEEEEecCCcC
Q 015490          351 FSYDSRALVSA-SMDSSVRVTVIEDKKK  377 (406)
Q Consensus       351 ~sp~~~~l~s~-s~dg~i~iw~~~~~~~  377 (406)
                      +++++++++.. ..++.+.+|++.....
T Consensus       237 ~s~d~~~~~~~~~~~~~~~~~~~~~~~~  264 (333)
T d1ri6a_         237 ITPDGRHLYACDRTASLITVFSVSEDGS  264 (333)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEECTTSC
T ss_pred             EecccCceeeecccCCeEEEEEEcCCCC
Confidence            99999877655 4678899999976543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.62  E-value=2.6e-14  Score=126.75  Aligned_cols=243  Identities=16%  Similarity=0.026  Sum_probs=158.5

Q ss_pred             ceEEEEccCCCeEEEEe----cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEe------
Q 015490          116 PYRMAIHPHGDGIICAL----QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAG------  185 (406)
Q Consensus       116 v~~~~~sp~~~~l~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~------  185 (406)
                      +.-.+.+||++.+++..    ...-.+|.||..+++.+..+.            . +....++|||||++|++.      
T Consensus         4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~------------~-g~~~~~a~SpDg~~l~v~~~~~~~   70 (355)
T d2bbkh_           4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID------------G-GFLPNPVVADDGSFIAHASTVFSR   70 (355)
T ss_dssp             CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE------------E-CSSCEEEECTTSSCEEEEEEEEEE
T ss_pred             cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEE------------C-CCCCceEEcCCCCEEEEEeCCCcc
Confidence            34446789999988764    234578889887665544332            1 223368999999988764      


Q ss_pred             ----eCCCeEEEEeCCCcceEeeeeccCC-------ceeEEEEccCCCEEEEEe--CCCCEEEEEcCCCeeeeecccCCc
Q 015490          186 ----SENGNLRVFKWPSLEIILNESEAHA-------SVKDLSFSPDGKFLVSLG--NRGPGRVWDLASSAVATPLAKEND  252 (406)
Q Consensus       186 ----~~dg~i~vwd~~~~~~~~~~~~~~~-------~i~~~~~s~~~~~l~s~s--~d~~i~iwd~~~~~~~~~~~~~~~  252 (406)
                          ..|+.|++||+.+++....+..+..       ....++|+++++++++++  .+..+.+|+..+++....+.....
T Consensus        71 ~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (355)
T d2bbkh_          71 IARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC  150 (355)
T ss_dssp             TTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE
T ss_pred             ccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCc
Confidence                3478999999999988776654322       345689999999888775  466899999999988877654332


Q ss_pred             ce------EEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 015490          253 EL------FASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISI  326 (406)
Q Consensus       253 ~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i  326 (406)
                      ..      ...+.+++++..     +......++.+.+++......     .+...+....+++++..++.++.++.+++
T Consensus       151 ~~~~~~~~~~~~~~~~dg~~-----~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  220 (355)
T d2bbkh_         151 YHIFPTAPDTFFMHCRDGSL-----AKVAFGTEGTPEITHTEVFHP-----EDEFLINHPAYSQKAGRLVWPTYTGKIHQ  220 (355)
T ss_dssp             EEEEEEETTEEEEEETTSCE-----EEEECCSSSCCEEEECCCCSC-----TTSCBCSCCEEETTTTEEEEEBTTSEEEE
T ss_pred             ceEeecCCcceEEEcCCCCE-----EEEEecCCCeEEEEecccccc-----eecceeeeccccCCCCeEEEecCCCeEEE
Confidence            21      123455555553     222233344444444433221     12233445677888889999999999999


Q ss_pred             EECCCceEEEEee-ccc----------ccceEEEEEcCCCCeEEEEECC----------CcEEEEEecCCcCCCCc
Q 015490          327 IDSSSLQVRTAVK-KAH----------LGIVTALAFSYDSRALVSASMD----------SSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       327 ~d~~~~~~~~~~~-~~~----------~~~v~~~~~sp~~~~l~s~s~d----------g~i~iw~~~~~~~~~~~  381 (406)
                      |++..++...... ..+          ......+++++++..++..+.+          ..|.+||+.+++.+..+
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~  296 (355)
T d2bbkh_         221 IDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKF  296 (355)
T ss_dssp             EECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE
T ss_pred             EecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEe
Confidence            9998765432111 111          1223458889999887765543          36999999998876554

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.59  E-value=2.9e-13  Score=125.01  Aligned_cols=110  Identities=16%  Similarity=0.121  Sum_probs=78.0

Q ss_pred             EEecCCCCceEEEEccCCCeEEEEecC--------CeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCC
Q 015490          108 ELRTDSDLPYRMAIHPHGDGIICALQN--------SCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEG  179 (406)
Q Consensus       108 ~~~~h~~~v~~~~~sp~~~~l~~~~~~--------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  179 (406)
                      ++..|...|.++.|||||++|+.+.+.        ...+|.|+..+++.            .....+...+..+.|||||
T Consensus        56 ~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~------------~~l~~~~~~~~~~~~SPDG  123 (470)
T d2bgra1          56 TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL------------ITEERIPNNTQWVTWSPVG  123 (470)
T ss_dssp             TTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE------------CCSSCCCTTEEEEEECSST
T ss_pred             hhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc------------cccccCCccccccccccCc
Confidence            345567889999999999999987531        23566777654331            1122245678899999999


Q ss_pred             CEEEEeeCCCeEEEEeCCCcceEeeeecc------------------CCceeEEEEccCCCEEEEEeCC
Q 015490          180 TIFAAGSENGNLRVFKWPSLEIILNESEA------------------HASVKDLSFSPDGKFLVSLGNR  230 (406)
Q Consensus       180 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------------------~~~i~~~~~s~~~~~l~s~s~d  230 (406)
                      +.+|.. .++.+++|+..+++.......+                  .+....+.|||||++|++...|
T Consensus       124 ~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         124 HKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             TCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred             ceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEec
Confidence            999985 5678999999888765433221                  1234568899999999987644

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.55  E-value=3.1e-12  Score=114.00  Aligned_cols=238  Identities=9%  Similarity=-0.070  Sum_probs=146.0

Q ss_pred             cEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEec---------CCeEEEEEecccccceeecceeccc
Q 015490           88 AVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQ---------NSCRLFEWDEVENTEIRRLGVKISE  158 (406)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~---------~~~~i~~~~~~~~~~~~~~~~~~~~  158 (406)
                      ...++.+|....    +.+..+.++...  .++|+|||+.++++..         .+..|+.||..+.+....+..+.. 
T Consensus        45 ~~~~~~~d~~~~----~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~-  117 (368)
T d1mdah_          45 TTENWVSCAGCG----VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA-  117 (368)
T ss_dssp             SEEEEEEETTTT----EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS-
T ss_pred             cceEEEEeCCCC----cEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCcc-
Confidence            347888888763    456666666544  6899999999987641         234577778777666555443211 


Q ss_pred             eeeecccccCcEEEEEECCCCCEEEEee-CCCeEEEEeCCCcceEeeeeccCC-------ceeEEEEccCCCEEEEEeC-
Q 015490          159 KVLSQLENVGQQLALTFDSEGTIFAAGS-ENGNLRVFKWPSLEIILNESEAHA-------SVKDLSFSPDGKFLVSLGN-  229 (406)
Q Consensus       159 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~-------~i~~~~~s~~~~~l~s~s~-  229 (406)
                      ....   .......++|+|||++++++. .++.+.+||+.+++....+..+..       ....+.+++||+.++.... 
T Consensus       118 ~~~~---~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~  194 (368)
T d1mdah_         118 PRFS---VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAA  194 (368)
T ss_dssp             CSCC---BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCS
T ss_pred             ceec---ccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecC
Confidence            1110   111223589999999988775 578999999999887766544332       1122344455544333221 


Q ss_pred             -----------------------------------CCCEEEEEcCCCeeeeecc--cCC---------cceEEEEEEEcC
Q 015490          230 -----------------------------------RGPGRVWDLASSAVATPLA--KEN---------DELFASCRFSPL  263 (406)
Q Consensus       230 -----------------------------------d~~i~iwd~~~~~~~~~~~--~~~---------~~~~~~~~~~~~  263 (406)
                                                         .+.+++++...+.......  ...         ......++++++
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~  274 (368)
T d1mdah_         195 APAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKN  274 (368)
T ss_dssp             SCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETT
T ss_pred             CceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCC
Confidence                                               2223333333322211110  000         001124677888


Q ss_pred             CCCceEEEEEEEcC------CCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCC-E-EEEEeCCCcEEEEECCCceEE
Q 015490          264 NNEDYVLYIAAITD------RGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGK-L-LAVGTASGDISIIDSSSLQVR  335 (406)
Q Consensus       264 ~~~~~~l~~~~~~~------~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~-~-l~~~~~dg~i~i~d~~~~~~~  335 (406)
                      +..   +|+.....      ....|.+||..+++.+..+... ..+.+++|+|||+ + ++++..++.|++||..+++.+
T Consensus       275 ~~~---~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~  350 (368)
T d1mdah_         275 TDG---IMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ  350 (368)
T ss_dssp             TTE---EEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred             CCE---EEEEecCCCceeecCCceEEEEECCCCcEeEEecCC-CceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence            774   44433322      1357999999999988877654 5678999999997 3 455666899999999999999


Q ss_pred             EEee
Q 015490          336 TAVK  339 (406)
Q Consensus       336 ~~~~  339 (406)
                      ..+.
T Consensus       351 ~~i~  354 (368)
T d1mdah_         351 SSVE  354 (368)
T ss_dssp             EECC
T ss_pred             EEEE
Confidence            9886

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=2.4e-11  Score=102.91  Aligned_cols=238  Identities=12%  Similarity=0.065  Sum_probs=147.0

Q ss_pred             EEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe--cCCeEEEEEecccccceeecceeccceeeecccc
Q 015490           89 VLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLEN  166 (406)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (406)
                      ..++..|.+.     .....+..+...+.+.+|||||+.|+...  .+...+|..+......            .+....
T Consensus        19 ~~l~i~d~dG-----~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~------------~~~~~~   81 (269)
T d2hqsa1          19 YELRVSDYDG-----YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV------------RQVASF   81 (269)
T ss_dssp             EEEEEEETTS-----CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE------------EEEECC
T ss_pred             EEEEEEcCCC-----CCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce------------eEEeee
Confidence            3577767655     23445556677889999999999999875  4444666666543321            122234


Q ss_pred             cCcEEEEEECCCCCEEEEeeC-CCe--EEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEe-CCCC--EEEEEcCC
Q 015490          167 VGQQLALTFDSEGTIFAAGSE-NGN--LRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLG-NRGP--GRVWDLAS  240 (406)
Q Consensus       167 ~~~v~~~~~s~~g~~l~~~~~-dg~--i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s-~d~~--i~iwd~~~  240 (406)
                      ........|+|+|+.++.... ++.  +..+........ .............+++++..++..+ .++.  |.+.++..
T Consensus        82 ~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~  160 (269)
T d2hqsa1          82 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING  160 (269)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred             ecccccceecCCCCeeeEeeecCCccceeecccccccce-eeeeccccccccccccccccceecccccCCceEeeeeccc
Confidence            567788999999998887543 222  333333333222 2223333455667788777655544 4444  55556655


Q ss_pred             CeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC
Q 015490          241 SAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA  320 (406)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~  320 (406)
                      +.......  .........|+|+++.   ++..........+.+.|...+..  .............|||||++|+..+.
T Consensus       161 ~~~~~~~~--~~~~~~~~~~spdg~~---~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~  233 (269)
T d2hqsa1         161 GAPQRITW--EGSQNQDADVSSDGKF---MVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSS  233 (269)
T ss_dssp             SCCEECCC--SSSEEEEEEECTTSSE---EEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEE
T ss_pred             ccceeeec--ccccccccccccccce---eEEEeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEc
Confidence            54333322  2345667899999985   33333334445666667666543  23334456688999999999987654


Q ss_pred             ---CCcEEEEECCCceEEEEeecccccceEEEEEcC
Q 015490          321 ---SGDISIIDSSSLQVRTAVKKAHLGIVTALAFSY  353 (406)
Q Consensus       321 ---dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp  353 (406)
                         ...|+++++..+.... +. ...+.+...+|||
T Consensus       234 ~~~~~~l~~~~~dg~~~~~-lt-~~~g~~~~p~WSP  267 (269)
T d2hqsa1         234 QGMGSVLNLVSTDGRFKAR-LP-ATDGQVKFPAWSP  267 (269)
T ss_dssp             ETTEEEEEEEETTSCCEEE-CC-CSSSEEEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEE-Ee-CCCCcEEeEEeCC
Confidence               3468999998766544 43 4567788899998

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.51  E-value=7.1e-12  Score=111.34  Aligned_cols=271  Identities=12%  Similarity=0.071  Sum_probs=160.7

Q ss_pred             cEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeeccccc
Q 015490           88 AVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV  167 (406)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (406)
                      .+..+.+|.+...+..... ........+..|+|+|+++.|+++..+.+..|.++..... .....          ....
T Consensus        15 ~i~~~~fd~~~~~l~~~~~-~~~~~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~-~~~~~----------~~~~   82 (365)
T d1jofa_          15 AIFTVQFDDEKLTCKLIKR-TEIPQDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEI-VHEAS----------HPIG   82 (365)
T ss_dssp             EEEEEEEETTTTEEEEEEE-EECCTTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEE-EEEEE----------EECC
T ss_pred             CEEEEEEcCCCCeEEEeee-eeccCCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCe-EEEee----------ecCC
Confidence            4677788887755422111 1223455678899999999999888888888888754321 11100          0111


Q ss_pred             CcEEEEEECCCCCEE--EEee-CCCeEEEEeCCC-------------cce---Eeeee-ccCCceeEEEEccCCCEEEEE
Q 015490          168 GQQLALTFDSEGTIF--AAGS-ENGNLRVFKWPS-------------LEI---ILNES-EAHASVKDLSFSPDGKFLVSL  227 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l--~~~~-~dg~i~vwd~~~-------------~~~---~~~~~-~~~~~i~~~~~s~~~~~l~s~  227 (406)
                      .....+.++++++.+  +++. ..+.|..+.+..             +..   ..... .....+.++.|+|||++++++
T Consensus        83 ~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~  162 (365)
T d1jofa_          83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA  162 (365)
T ss_dssp             SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred             CCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEe
Confidence            233456777777643  3322 234454443311             111   11111 112257899999999988887


Q ss_pred             eC-CCCEEEEEcCCCe-ee--ee-cccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceE--EEEeeec-
Q 015490          228 GN-RGPGRVWDLASSA-VA--TP-LAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKR--IRTKQVV-  299 (406)
Q Consensus       228 s~-d~~i~iwd~~~~~-~~--~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~--~~~~~~~-  299 (406)
                      +. ...|.+|+..... ..  .. .....+.....++|+|+++.     +.++...++.|.+|+....+.  +...... 
T Consensus       163 d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~-----~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~  237 (365)
T d1jofa_         163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNY-----LYALMEAGNRICEYVIDPATHMPVYTHHSFP  237 (365)
T ss_dssp             ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSE-----EEEEETTTTEEEEEEECTTTCCEEEEEEEEE
T ss_pred             eCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCce-----EEEeccCCCEEEEEEecCCCceEEEEeeeec
Confidence            64 4478888765432 21  11 11223445778999999985     445567889999999865432  2221110 


Q ss_pred             ----------------CCCeEEEEEcCCCCEEEEEeC------CCcEEEEECCCceEEEE---ee--cccccceEEEEEc
Q 015490          300 ----------------REPVSSFNVSADGKLLAVGTA------SGDISIIDSSSLQVRTA---VK--KAHLGIVTALAFS  352 (406)
Q Consensus       300 ----------------~~~i~~~~~sp~~~~l~~~~~------dg~i~i~d~~~~~~~~~---~~--~~~~~~v~~~~~s  352 (406)
                                      ......+.++|||++|+++..      .+.|..|++.....+..   +.  ........+++++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~  317 (365)
T d1jofa_         238 LIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPC  317 (365)
T ss_dssp             SSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEEC
T ss_pred             cccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEec
Confidence                            112467899999999988753      22377777754322211   11  0123456789999


Q ss_pred             C-CCCeEEEE-ECCCcEEEEEecCC
Q 015490          353 Y-DSRALVSA-SMDSSVRVTVIEDK  375 (406)
Q Consensus       353 p-~~~~l~s~-s~dg~i~iw~~~~~  375 (406)
                      | +|++|+++ ..++.|.+|+++..
T Consensus       318 p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         318 PWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             TTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            8 79988766 46789999998654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.47  E-value=1.4e-12  Score=116.47  Aligned_cols=233  Identities=9%  Similarity=-0.026  Sum_probs=154.3

Q ss_pred             CCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCC--EEEEeeCCC
Q 015490          112 DSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGT--IFAAGSENG  189 (406)
Q Consensus       112 h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~~~~~dg  189 (406)
                      |........++|||++|++.....-+|..++..+.+....+.          +.....+..++|+|+|+  +++..+.+.
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~----------iP~g~gphgi~~spdg~t~YV~~~~~~~  139 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITH----------IPNVQAIHGLRLQKVPKTNYVFCNAEFV  139 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEE----------CTTCCCEEEEEECCSSBCCEEEEEECSC
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEe----------cCCCCCccceEEeccCCEEEEEeccCCc
Confidence            444455566789999999887444467777776555433322          22446788999999997  444444332


Q ss_pred             -----------------eEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCC---------------------
Q 015490          190 -----------------NLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRG---------------------  231 (406)
Q Consensus       190 -----------------~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~---------------------  231 (406)
                                       .+..+|..+.+....+... .....+.|+|||+++++.+.+.                     
T Consensus       140 v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n  218 (441)
T d1qnia2         140 IPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFN  218 (441)
T ss_dssp             EESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEE
T ss_pred             ccccCcccccccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCC
Confidence                             2455788887776666543 3578899999999988876432                     


Q ss_pred             --------------------CEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCce
Q 015490          232 --------------------PGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK  291 (406)
Q Consensus       232 --------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~  291 (406)
                                          .+.+++....+.+..++.+.  ....+.++|++++     +.+++..+++|.+||+.+..
T Consensus       219 ~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgk--sPhGv~vSPDGky-----l~~~~~~~~tvsv~d~~k~~  291 (441)
T d1qnia2         219 VERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPK--NPHGLNTSPDGKY-----FIANGKLSPTVSVIAIDKLD  291 (441)
T ss_dssp             HHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBS--SCCCEEECTTSCE-----EEEECTTSSBEEEEEGGGHH
T ss_pred             ccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCC--CccCceECCCCCE-----EEEeCCcCCcEEEEEeehhh
Confidence                                22333333333444444322  2457899999995     77888999999999986532


Q ss_pred             E-----------EEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC----------ceEEEEe----ecccccce
Q 015490          292 R-----------IRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSS----------LQVRTAV----KKAHLGIV  346 (406)
Q Consensus       292 ~-----------~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~----------~~~~~~~----~~~~~~~v  346 (406)
                      .           +.-.....-.....+|+++|+.+.+...|..|..|++..          ...+..+    ..+|...+
T Consensus       292 ~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~  371 (441)
T d1qnia2         292 DLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHAS  371 (441)
T ss_dssp             HHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEET
T ss_pred             hHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccc
Confidence            1           111111122345678999998888888899999999741          1223332    13787778


Q ss_pred             EEEEEcCCCCeEEEEE
Q 015490          347 TALAFSYDSRALVSAS  362 (406)
Q Consensus       347 ~~~~~sp~~~~l~s~s  362 (406)
                      .+.+++|||++|++++
T Consensus       372 ~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         372 LTESRDADGKWLVVLS  387 (441)
T ss_dssp             TTTSTTCCCCEEEEEE
T ss_pred             cccccCCCCcEEEecC
Confidence            8888999999999993

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.38  E-value=9.3e-12  Score=111.09  Aligned_cols=188  Identities=14%  Similarity=0.113  Sum_probs=135.3

Q ss_pred             EEEeeCCCeEEEEeCCCcceEeeeec------------------------------cCCceeEEEEccCCCEEEEEe-CC
Q 015490          182 FAAGSENGNLRVFKWPSLEIILNESE------------------------------AHASVKDLSFSPDGKFLVSLG-NR  230 (406)
Q Consensus       182 l~~~~~dg~i~vwd~~~~~~~~~~~~------------------------------~~~~i~~~~~s~~~~~l~s~s-~d  230 (406)
                      +++|+.+|.|++|++.+++.+..+.-                              |+........+|||++|++.. .+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            66788899999999998887665421                              222344455678999887665 67


Q ss_pred             CCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCC----------------cEEEEEeCCCceEEE
Q 015490          231 GPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRG----------------ASIVTWNTTTWKRIR  294 (406)
Q Consensus       231 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------~~i~~~d~~~~~~~~  294 (406)
                      +.|.++|+.+++....+..........++|+|+++.   .|+++.+...                ..+..+|..+.+...
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t---~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~  170 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKT---NYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAW  170 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBC---CEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCE---EEEEeccCCcccccCcccccccccccceEEeecCccceeeE
Confidence            789999999999888766555667889999999986   3344333221                234668888888877


Q ss_pred             EeeecCCCeEEEEEcCCCCEEEEEeCC-----------------------------------------CcEEEEECCCce
Q 015490          295 TKQVVREPVSSFNVSADGKLLAVGTAS-----------------------------------------GDISIIDSSSLQ  333 (406)
Q Consensus       295 ~~~~~~~~i~~~~~sp~~~~l~~~~~d-----------------------------------------g~i~i~d~~~~~  333 (406)
                      ++... .....+.++|+|+++++.+.+                                         +.+.+++....+
T Consensus       171 qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~  249 (441)
T d1qnia2         171 QVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESE  249 (441)
T ss_dssp             EEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCS
T ss_pred             EEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCc
Confidence            77665 456889999999999887653                                         234444445455


Q ss_pred             EEEEeecccccceEEEEEcCCCCeEE-EEECCCcEEEEEecCC
Q 015490          334 VRTAVKKAHLGIVTALAFSYDSRALV-SASMDSSVRVTVIEDK  375 (406)
Q Consensus       334 ~~~~~~~~~~~~v~~~~~sp~~~~l~-s~s~dg~i~iw~~~~~  375 (406)
                      .+..+. .. .....+.++|||++++ ++..+++|.|||+++.
T Consensus       250 v~~~IP-vg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~  290 (441)
T d1qnia2         250 FTRYIP-VP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKL  290 (441)
T ss_dssp             SEEEEC-CB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGH
T ss_pred             eEEEEe-CC-CCccCceECCCCCEEEEeCCcCCcEEEEEeehh
Confidence            555554 33 3357899999999875 5678999999998763

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.36  E-value=2.5e-10  Score=96.09  Aligned_cols=239  Identities=12%  Similarity=0.071  Sum_probs=150.8

Q ss_pred             CCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEE
Q 015490          114 DLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRV  193 (406)
Q Consensus       114 ~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~v  193 (406)
                      -.+..+++.++|...++......++..++.....           ..............++++++|+++++....+.+++
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~-----------~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~   82 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG-----------TTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTL   82 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----C-----------EEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEE
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCce-----------EEEeccCCccCceEEEEcCCCCEEEeeeeeceeee
Confidence            4568999999999777665444466555543221           11111222344567899999998888777777777


Q ss_pred             EeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEE
Q 015490          194 FKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIA  273 (406)
Q Consensus       194 wd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  273 (406)
                      ++-.+....... .......++++.++++++++-.....+..++........ ...........+++.++++      +.
T Consensus        83 ~~~~~~~~~~~~-~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~g~------~~  154 (260)
T d1rwia_          83 AAGSNNQTVLPF-DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV-LPFTGLNDPDGVAVDNSGN------VY  154 (260)
T ss_dssp             CTTCSCCEECCC-CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEE-CCCCSCCSCCEEEECTTCC------EE
T ss_pred             eeeccceeeeee-eeeeecccccccccceeEeeccccccccccccccceeee-eeecccCCcceeeecCCCC------Ee
Confidence            765555444332 222367899999999877766666667777765433222 2111122345788888876      22


Q ss_pred             EEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcC
Q 015490          274 AITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSY  353 (406)
Q Consensus       274 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp  353 (406)
                      ++...++.|..+|.............-.....++++++|+++++....+.|..++...... ..+....-.....|++++
T Consensus       155 v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~~~~~~~~~P~~i~~d~  233 (260)
T d1rwia_         155 VTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVLPFTGLNTPLAVAVDS  233 (260)
T ss_dssp             EEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-EECCCCSCCCEEEEEECT
T ss_pred             eeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-EEEccCCCCCeEEEEEeC
Confidence            3345677899999876544332223335578999999999888877788888888764432 222212334578999999


Q ss_pred             CCCeEEEEECCCcEEEEEe
Q 015490          354 DSRALVSASMDSSVRVTVI  372 (406)
Q Consensus       354 ~~~~l~s~s~dg~i~iw~~  372 (406)
                      +|.++++-..+++|+..+.
T Consensus       234 ~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         234 DRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             TCCEEEEEGGGTEEEEECC
T ss_pred             CCCEEEEECCCCEEEEEeC
Confidence            9988777666776655443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.36  E-value=2.2e-10  Score=98.79  Aligned_cols=227  Identities=13%  Similarity=0.098  Sum_probs=146.2

Q ss_pred             CceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEE
Q 015490          115 LPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVF  194 (406)
Q Consensus       115 ~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vw  194 (406)
                      .+..++++|||+.+++.... .+||.++.....             .........+.+++|++||+++++...++.+..+
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~-~~I~~i~p~g~~-------------~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~   94 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEV-GEIVSITPDGNQ-------------QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVV   94 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTT-TEEEEECTTCCE-------------EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CcCCEEECCCCCEEEEeCCC-CEEEEEeCCCCE-------------EEEEcCCCCcceEEEcCCCCeEEEecCCceEEEE
Confidence            46789999999977665433 378888854221             1112234678999999999999988888888888


Q ss_pred             eCCCcce-Eeeee--ccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeeccc---------CCcceEEEEEEEc
Q 015490          195 KWPSLEI-ILNES--EAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAK---------ENDELFASCRFSP  262 (406)
Q Consensus       195 d~~~~~~-~~~~~--~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~---------~~~~~~~~~~~~~  262 (406)
                      +...... ...+.  ........+++.++++++++.+.++.+..+|...+........         ........+.+. 
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~-  173 (302)
T d2p4oa1          95 SLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF-  173 (302)
T ss_dssp             EEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE-
T ss_pred             EecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc-
Confidence            7644321 11221  2233678999999999888888888898888877653322111         111223445554 


Q ss_pred             CCCCceEEEEEEEcCCCcEEEEEeCCCceEE---EEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEee
Q 015490          263 LNNEDYVLYIAAITDRGASIVTWNTTTWKRI---RTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVK  339 (406)
Q Consensus       263 ~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  339 (406)
                       +..     +.......+.|+.++.......   .... .......++++++|+++++...++.|..++... +......
T Consensus       174 -~~~-----l~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G-~~~~~~~  245 (302)
T d2p4oa1         174 -GNF-----LYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR-STTIIAQ  245 (302)
T ss_dssp             -TTE-----EEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC-CEEEEEC
T ss_pred             -CCc-----eeeecCCCCeEEecccccccccccccccc-CCCCCcceEECCCCCEEEEEcCCCcEEEECCCC-CEEEEEe
Confidence             332     3344566788888887653321   1121 223456799999999888777889999998764 3322221


Q ss_pred             -cccccceEEEEE---cCCCCeEEEEECC
Q 015490          340 -KAHLGIVTALAF---SYDSRALVSASMD  364 (406)
Q Consensus       340 -~~~~~~v~~~~~---sp~~~~l~s~s~d  364 (406)
                       ...-...++++|   ++|++.|+.++..
T Consensus       246 ~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         246 AEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             GGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             cCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence             123345789999   6788888765543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=9.1e-10  Score=92.91  Aligned_cols=202  Identities=14%  Similarity=0.118  Sum_probs=127.8

Q ss_pred             cccCcEEEEEECCCCCEEEEeeCCC---eEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeC-CCCEEE--EEc
Q 015490          165 ENVGQQLALTFDSEGTIFAAGSENG---NLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGN-RGPGRV--WDL  238 (406)
Q Consensus       165 ~~~~~v~~~~~s~~g~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~-d~~i~i--wd~  238 (406)
                      .+...+...+|||||+.||......   .+.+.+...+... .+..+........|+|+|+.++.... ++...+  +..
T Consensus        36 ~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~  114 (269)
T d2hqsa1          36 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL  114 (269)
T ss_dssp             EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred             cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCeeeEeeecCCccceeeccc
Confidence            3556678899999999999765433   5777777666544 44455667888999999998887664 333333  333


Q ss_pred             CCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEE
Q 015490          239 ASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVG  318 (406)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~  318 (406)
                      ..........  .........+++++..   .++.........|...++...... .............|+|+++.++..
T Consensus       115 ~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~~~~~  188 (269)
T d2hqsa1         115 ASGQIRQVTD--GRSNNTEPTWFPDSQN---LAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMV  188 (269)
T ss_dssp             TTCCEEECCC--CSSCEEEEEECTTSSE---EEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEEE
T ss_pred             ccccceeeee--cccccccccccccccc---ceecccccCCceEeeeecccccce-eeecccccccccccccccceeEEE
Confidence            3333222222  2223345567777664   223333334457777887775443 333345667788999999998887


Q ss_pred             eCCC---cEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECC---CcEEEEEecCCc
Q 015490          319 TASG---DISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMD---SSVRVTVIEDKK  376 (406)
Q Consensus       319 ~~dg---~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~d---g~i~iw~~~~~~  376 (406)
                      +.++   .+.+.+...+... .+  .+........|||||+.|+..+..   ..|+++++..++
T Consensus       189 ~~~~~~~~i~~~~~~~~~~~-~~--~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~  249 (269)
T d2hqsa1         189 SSNGGQQHIAKQDLATGGVQ-VL--SSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF  249 (269)
T ss_dssp             EECSSCEEEEEEETTTCCEE-EC--CCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred             eecCCceeeeEeecccccce-Ee--ecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence            6643   3555566555432 22  355667788999999998755533   468888887654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.31  E-value=7.1e-09  Score=89.46  Aligned_cols=254  Identities=10%  Similarity=0.072  Sum_probs=155.8

Q ss_pred             EecCCCCceEEEEccCCCeEEEEecC------CeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEE
Q 015490          109 LRTDSDLPYRMAIHPHGDGIICALQN------SCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIF  182 (406)
Q Consensus       109 ~~~h~~~v~~~~~sp~~~~l~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  182 (406)
                      +...-..+..++|.|+|+.+++....      ..+|+.++..++........       ...........++|.++++.+
T Consensus        13 v~~~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~-------~~~~~~g~P~Gl~~~~dg~~l   85 (314)
T d1pjxa_          13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP-------EVNGYGGIPAGCQCDRDANQL   85 (314)
T ss_dssp             EECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC-------EETTEECCEEEEEECSSSSEE
T ss_pred             eecCCCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECC-------ccccCCCcceeEEEeCCCCEE
Confidence            33334456788999999977765322      23688888765432211100       000011345789999999888


Q ss_pred             EEeeCCCeEEEEeCCCcceEeeeeccCC----ceeEEEEccCCCEEEEEeC---------------CCCEEEEEcCCCee
Q 015490          183 AAGSENGNLRVFKWPSLEIILNESEAHA----SVKDLSFSPDGKFLVSLGN---------------RGPGRVWDLASSAV  243 (406)
Q Consensus       183 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~----~i~~~~~s~~~~~l~s~s~---------------d~~i~iwd~~~~~~  243 (406)
                      +++...+.|..++.+.............    ..+++++.++|++.++-..               .|.|..++. .++.
T Consensus        86 ~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~  164 (314)
T d1pjxa_          86 FVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQM  164 (314)
T ss_dssp             EEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCE
T ss_pred             EEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCce
Confidence            8887777888889765543322222221    3578999999987766432               123333333 2332


Q ss_pred             eeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEE------eee-cCCCeEEEEEcCCCCEEE
Q 015490          244 ATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRT------KQV-VREPVSSFNVSADGKLLA  316 (406)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~------~~~-~~~~i~~~~~sp~~~~l~  316 (406)
                      ......  -.....++|+|++..... .+.++....+.|+.||+.....+..      +.. .......+++..+|++.+
T Consensus       165 ~~~~~~--~~~pNGi~~~~d~d~~~~-~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyV  241 (314)
T d1pjxa_         165 IQVDTA--FQFPNGIAVRHMNDGRPY-QLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLV  241 (314)
T ss_dssp             EEEEEE--ESSEEEEEEEECTTSCEE-EEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEE
T ss_pred             eEeeCC--cceeeeeEECCCCCccee-EEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEE
Confidence            222211  112357889987653111 2334456788899988754322221      111 112356899999999888


Q ss_pred             EEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCCe-EEEEECCCcEEEEEecC
Q 015490          317 VGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRA-LVSASMDSSVRVTVIED  374 (406)
Q Consensus       317 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~s~s~dg~i~iw~~~~  374 (406)
                      +....+.|.+||.+.++....+. .+...+++++|.||++. +++.+.+|+|...++..
T Consensus       242 a~~~~g~I~~~dp~~g~~~~~i~-~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         242 ANWGSSHIEVFGPDGGQPKMRIR-CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEETTTEEEEECTTCBSCSEEEE-CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEcCCCEEEEEeCCCCEEEEEEE-CCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            77778999999998887766664 45567889999999874 46666778887777643

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.16  E-value=1.5e-10  Score=106.34  Aligned_cols=155  Identities=15%  Similarity=0.103  Sum_probs=111.7

Q ss_pred             eEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccC----CcceEEEEEEEcCCCCceEEEEEEE-----cCCCcEEE
Q 015490          213 KDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKE----NDELFASCRFSPLNNEDYVLYIAAI-----TDRGASIV  283 (406)
Q Consensus       213 ~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~i~  283 (406)
                      ..+.|.++++++.  ..++.+.+||+.+++....+..+    +...+.++.|+||++.  +++..-.     .+.++.++
T Consensus        20 ~~~~W~~d~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~--i~~~~~~~~~~r~s~~~~~~   95 (470)
T d2bgra1          20 YSLRWISDHEYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQF--ILLEYNYVKQWRHSYTASYD   95 (470)
T ss_dssp             CCCEECSSSEEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSE--EEEEEEEEECSSSCEEEEEE
T ss_pred             cCCEeCCCCEEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCE--EEEEECCcceeeeccCceEE
Confidence            4688999998665  35788999999999876544322    2345789999999996  2221100     13467899


Q ss_pred             EEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecc-----------------cccce
Q 015490          284 TWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKA-----------------HLGIV  346 (406)
Q Consensus       284 ~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----------------~~~~v  346 (406)
                      +||+.+++ +..+..+...+..+.|||||++||... ++.+++|+..+++.......+                 +.+..
T Consensus        96 l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~  173 (470)
T d2bgra1          96 IYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY  173 (470)
T ss_dssp             EEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred             EEECCCCc-ccccccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCc
Confidence            99999976 455777778899999999999999864 778999999988766544211                 12234


Q ss_pred             EEEEEcCCCCeEEEEECCCc-EEEEEec
Q 015490          347 TALAFSYDSRALVSASMDSS-VRVTVIE  373 (406)
Q Consensus       347 ~~~~~sp~~~~l~s~s~dg~-i~iw~~~  373 (406)
                      ..+.|||||++|+....|.+ +..|.+.
T Consensus       174 ~~~~wSPDGk~ia~~~~d~~~v~~~~~~  201 (470)
T d2bgra1         174 SALWWSPNGTFLAYAQFNDTEVPLIEYS  201 (470)
T ss_dssp             BCEEECTTSSEEEEEEEECTTCCEEEEE
T ss_pred             cccEECCCCCccceeEecCCcCceEEEE
Confidence            56889999999998876644 5555553

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.15  E-value=2.7e-07  Score=79.47  Aligned_cols=246  Identities=11%  Similarity=0.070  Sum_probs=146.7

Q ss_pred             EecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeC-
Q 015490          109 LRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE-  187 (406)
Q Consensus       109 ~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-  187 (406)
                      +......+..++|.++|+..+ +.-...+|+.++.........           ..........+++++||+++++... 
T Consensus        35 ~~~~~~~lEG~~~D~~G~Ly~-~D~~~g~I~ri~p~g~~~~~~-----------~~~~~~~p~gla~~~dG~l~va~~~~  102 (319)
T d2dg1a1          35 ISKKGLQLEGLNFDRQGQLFL-LDVFEGNIFKINPETKEIKRP-----------FVSHKANPAAIKIHKDGRLFVCYLGD  102 (319)
T ss_dssp             EESSCCCEEEEEECTTSCEEE-EETTTCEEEEECTTTCCEEEE-----------EECSSSSEEEEEECTTSCEEEEECTT
T ss_pred             eccCCcCcEeCEECCCCCEEE-EECCCCEEEEEECCCCeEEEE-----------EeCCCCCeeEEEECCCCCEEEEecCC
Confidence            333344556899999998444 443344788887654322111           1123345789999999998876532 


Q ss_pred             ---CCeEEEEeCCCcceEeeeecc--CCceeEEEEccCCCEEEEEeCC------CCEEEEEcCCCeeeeecccCCcceEE
Q 015490          188 ---NGNLRVFKWPSLEIILNESEA--HASVKDLSFSPDGKFLVSLGNR------GPGRVWDLASSAVATPLAKENDELFA  256 (406)
Q Consensus       188 ---dg~i~vwd~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~s~s~d------~~i~iwd~~~~~~~~~~~~~~~~~~~  256 (406)
                         .+.+...+.............  ......+++.++|++.++....      +.+..++..... +..+.. .-....
T Consensus       103 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~-~~~~pn  180 (319)
T d2dg1a1         103 FKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQ-NISVAN  180 (319)
T ss_dssp             SSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEE-EESSEE
T ss_pred             CccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEee-ccceee
Confidence               334555555554433322221  2267889999999866654321      234444443322 222211 112346


Q ss_pred             EEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCc-e---EEEE-e---eecCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 015490          257 SCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTW-K---RIRT-K---QVVREPVSSFNVSADGKLLAVGTASGDISIID  328 (406)
Q Consensus       257 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~-~---~~~~-~---~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d  328 (406)
                      .++|+|+++.   +|  .+....+.|+.||+... .   .... .   .........++++++|++.++....+.|.+||
T Consensus       181 Gia~s~dg~~---ly--vad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~  255 (319)
T d2dg1a1         181 GIALSTDEKV---LW--VTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFN  255 (319)
T ss_dssp             EEEECTTSSE---EE--EEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred             eeeeccccce---EE--EecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEEC
Confidence            7999999985   33  34456789999987532 1   1111 1   11112356899999999888888899999999


Q ss_pred             CCCceEEEEeec-----ccccceEEEEEcCCCCeEEEEECC----CcEEEEEecC
Q 015490          329 SSSLQVRTAVKK-----AHLGIVTALAFSYDSRALVSASMD----SSVRVTVIED  374 (406)
Q Consensus       329 ~~~~~~~~~~~~-----~~~~~v~~~~~sp~~~~l~s~s~d----g~i~iw~~~~  374 (406)
                      . .++.+..+..     ++...+++++|.+++..+++.+.+    +.-.+|.++.
T Consensus       256 p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~  309 (319)
T d2dg1a1         256 K-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG  309 (319)
T ss_dssp             T-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred             C-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeC
Confidence            5 6888777642     233457899999988777665432    3344555544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.13  E-value=2e-07  Score=78.75  Aligned_cols=246  Identities=12%  Similarity=0.127  Sum_probs=153.1

Q ss_pred             CceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCC-CCEEEE-eeCCCeEE
Q 015490          115 LPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSE-GTIFAA-GSENGNLR  192 (406)
Q Consensus       115 ~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~-~~~dg~i~  192 (406)
                      .+..++++++|+.+++-..+. +|..++.. ++....+.....     ..........+++..+ +..+++ .+.++.|.
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~-rI~v~d~~-G~~~~~~~~~~~-----~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~   96 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNH-RIQIFDKE-GRFKFQFGECGK-----RDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ   96 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGT-EEEEECTT-SCEEEEECCBSS-----STTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred             CccEEEEcCCCCEEEEECCCC-EEEEEeCC-CCEEEEecccCC-----CcccccccccccccccccccceeccCCccccc
Confidence            458899999998665543222 45555543 333322211000     0001122344555554 334433 34556788


Q ss_pred             EEeCCCcceEeeeecc-CCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeeccc-CCcceEEEEEEEcCCCCceEE
Q 015490          193 VFKWPSLEIILNESEA-HASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAK-ENDELFASCRFSPLNNEDYVL  270 (406)
Q Consensus       193 vwd~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l  270 (406)
                      .++. .+.....+... ......+++.++++.+++....+.+.+++.. ++.+..+.. .+......+++.++++     
T Consensus        97 ~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~-----  169 (279)
T d1q7fa_          97 IYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQE-----  169 (279)
T ss_dssp             EECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSE-----
T ss_pred             cccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeecccccccccccceeeecccee-----
Confidence            8875 45555444322 2367889999999988877777788888864 455554422 2234466788888775     


Q ss_pred             EEEEEcCCCcEEEEEeCCCceEEEEeee--cCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCceEEEEeec-ccccce
Q 015490          271 YIAAITDRGASIVTWNTTTWKRIRTKQV--VREPVSSFNVSADGKLLAVGTA-SGDISIIDSSSLQVRTAVKK-AHLGIV  346 (406)
Q Consensus       271 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~-~~~~~v  346 (406)
                       +.++....+.|++||... +.+.++..  .......++++++|+.+++-.. ++.|.+|+. +++.+..+.. ......
T Consensus       170 -i~v~d~~~~~V~~~d~~G-~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p  246 (279)
T d1q7fa_         170 -IFISDNRAHCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQC  246 (279)
T ss_dssp             -EEEEEGGGTEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCE
T ss_pred             -EEeeeccccceeeeecCC-ceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCE
Confidence             334456678999999754 55555532  2345789999999997766544 456999985 5777766642 222357


Q ss_pred             EEEEEcCCCCeEEEEECCCcEEEEEecCCcCC
Q 015490          347 TALAFSYDSRALVSASMDSSVRVTVIEDKKKS  378 (406)
Q Consensus       347 ~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~  378 (406)
                      ..+++.|||.+++ ++.+++|++|......++
T Consensus       247 ~~vav~~dG~l~V-~~~n~~v~~fr~~~~~~~  277 (279)
T d1q7fa_         247 FDVALMDDGSVVL-ASKDYRLYIYRYVQLAPV  277 (279)
T ss_dssp             EEEEEETTTEEEE-EETTTEEEEEECSCCCCT
T ss_pred             eEEEEeCCCcEEE-EeCCCeEEEEEeeeecCC
Confidence            8999999997555 568899999999887654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.12  E-value=2.1e-08  Score=88.41  Aligned_cols=203  Identities=9%  Similarity=-0.004  Sum_probs=120.7

Q ss_pred             ccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeee--eccCCceeEEEEccCCCEEE--EEe-CCCCEEEEEcCC
Q 015490          166 NVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNE--SEAHASVKDLSFSPDGKFLV--SLG-NRGPGRVWDLAS  240 (406)
Q Consensus       166 ~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~--s~s-~d~~i~iwd~~~  240 (406)
                      ....+..++|++++++|++... +.+..|.+.........  .........+.++++++.+.  ++. ..+++..+.+..
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~  116 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccC
Confidence            3445567999999999988764 56788877532222222  11223456788899988543  322 234555544321


Q ss_pred             C-------------e---eeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC-ceE--EEEee--ec
Q 015490          241 S-------------A---VATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT-WKR--IRTKQ--VV  299 (406)
Q Consensus       241 ~-------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~-~~~--~~~~~--~~  299 (406)
                      .             +   ............+.++.|+|++++     +.+.......|.+|+... +..  .....  ..
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~-----l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~  191 (365)
T d1jofa_         117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETY-----LYSADLTANKLWTHRKLASGEVELVGSVDAPDP  191 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSE-----EEEEETTTTEEEEEEECTTSCEEEEEEEECSST
T ss_pred             CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCE-----EEEeeCCCCEEEEEEccCCCceeeccceeecCC
Confidence            1             0   111111122334679999999995     344445566888887543 222  22222  12


Q ss_pred             CCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCceEE--EEee----------------cccccceEEEEEcCCCCeEEE
Q 015490          300 REPVSSFNVSADGKLLAVGTA-SGDISIIDSSSLQVR--TAVK----------------KAHLGIVTALAFSYDSRALVS  360 (406)
Q Consensus       300 ~~~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~~~~~~--~~~~----------------~~~~~~v~~~~~sp~~~~l~s  360 (406)
                      ......++|+|+++++++..+ +++|.+|++...+..  ....                ..+......+.++|||++|++
T Consensus       192 g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyv  271 (365)
T d1jofa_         192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA  271 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEE
Confidence            356789999999999877765 788999998764322  1111                011223567899999999887


Q ss_pred             EEC-C-----CcEEEEEecC
Q 015490          361 ASM-D-----SSVRVTVIED  374 (406)
Q Consensus       361 ~s~-d-----g~i~iw~~~~  374 (406)
                      +.. +     ..|..|++..
T Consensus       272 snr~~~~~~~~~i~~~~~~~  291 (365)
T d1jofa_         272 SSRANKFELQGYIAGFKLRD  291 (365)
T ss_dssp             EEEESSTTSCCEEEEEEECT
T ss_pred             EcccCCCccceEEEEEEecC
Confidence            642 2     2377777654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.04  E-value=1.1e-06  Score=73.97  Aligned_cols=157  Identities=8%  Similarity=0.069  Sum_probs=113.0

Q ss_pred             CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeec--cCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeee
Q 015490          168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESE--AHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT  245 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~  245 (406)
                      .....+++.++|+++++....+.+.+++. +++.+..+..  +......+++.++++.+++....+.|++||.. ++.+.
T Consensus       114 ~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~  191 (279)
T d1q7fa_         114 QHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLR  191 (279)
T ss_dssp             SCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEE
T ss_pred             cccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeeeccccceeeeecC-Cceee
Confidence            55678999999998888777888988884 4555554422  23367889999999888888888999999974 55555


Q ss_pred             eccc-CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC--CCeEEEEEcCCCCEEEEEeCCC
Q 015490          246 PLAK-ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR--EPVSSFNVSADGKLLAVGTASG  322 (406)
Q Consensus       246 ~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg  322 (406)
                      .+.. ........+++.++++-     +++-...++.|.+++. +++.+.++....  .....+++.|+|+++ +++.++
T Consensus       192 ~~g~~g~~~~P~giavD~~G~i-----~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l~-V~~~n~  264 (279)
T d1q7fa_         192 QIGGEGITNYPIGVGINSNGEI-----LIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVV-LASKDY  264 (279)
T ss_dssp             EESCTTTSCSEEEEEECTTCCE-----EEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEE-EEETTT
T ss_pred             eecccccccCCcccccccCCeE-----EEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcEE-EEeCCC
Confidence            5532 22334678999999972     3333344668999985 467766665432  457899999999754 456789


Q ss_pred             cEEEEECCCce
Q 015490          323 DISIIDSSSLQ  333 (406)
Q Consensus       323 ~i~i~d~~~~~  333 (406)
                      .|++|......
T Consensus       265 ~v~~fr~~~~~  275 (279)
T d1q7fa_         265 RLYIYRYVQLA  275 (279)
T ss_dssp             EEEEEECSCCC
T ss_pred             eEEEEEeeeec
Confidence            99999987653

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.01  E-value=3.9e-08  Score=82.29  Aligned_cols=198  Identities=10%  Similarity=0.044  Sum_probs=127.8

Q ss_pred             CcEEEEEECCCCCEEEEe-eCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeee
Q 015490          168 GQQLALTFDSEGTIFAAG-SENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATP  246 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~  246 (406)
                      .....++++++|..+++. +..+.+..++...................++++++++.+++....+.+++++-.+......
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~   93 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP   93 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeee
Confidence            346789999999866654 4557777777654433333223233567899999998777766666666666555544433


Q ss_pred             cccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 015490          247 LAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISI  326 (406)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i  326 (406)
                      ..  .......+++.++++    ++  +....+..+..++...................++++++++.+++...++.|..
T Consensus        94 ~~--~~~~p~~iavd~~g~----i~--v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~  165 (260)
T d1rwia_          94 FD--GLNYPEGLAVDTQGA----VY--VADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVK  165 (260)
T ss_dssp             CC--SCCSEEEEEECTTCC----EE--EEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEE
T ss_pred             ee--eeeecccccccccce----eE--eeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccc
Confidence            32  223467899999886    22  23345666777776654332222122234578999999998888788888999


Q ss_pred             EECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecC
Q 015490          327 IDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIED  374 (406)
Q Consensus       327 ~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~  374 (406)
                      +|.......... .........+++.++|+++++....+.|..++...
T Consensus       166 ~d~~~~~~~~~~-~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~  212 (260)
T d1rwia_         166 LEAESNNQVVLP-FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS  212 (260)
T ss_dssp             ECTTTCCEEECC-CSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTC
T ss_pred             cccccceeeeee-ccccCCCccceeeeeeeeeeeecCCCEEEEEeCCC
Confidence            998755443322 23445678999999999888877788888776543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.00  E-value=1e-07  Score=81.58  Aligned_cols=203  Identities=13%  Similarity=0.044  Sum_probs=134.5

Q ss_pred             ecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCC
Q 015490          162 SQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASS  241 (406)
Q Consensus       162 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~  241 (406)
                      ..+.....+..++++|||+++++...+++|+.|+... +. ..+......+.+++|++||+++++...++.+..++....
T Consensus        22 ~~~p~~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~~-~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~   99 (302)
T d2p4oa1          22 TSFPVNTFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQ-QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKS   99 (302)
T ss_dssp             EEECTTCCEEEEEECTTSCEEEEETTTTEEEEECTTC-CE-EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECT
T ss_pred             EECCCCCCcCCEEECCCCCEEEEeCCCCEEEEEeCCC-CE-EEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccc
Confidence            3343445678899999999999998899998888543 32 234445567899999999998888888888888876543


Q ss_pred             --eeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeec----------CCCeEEEEEc
Q 015490          242 --AVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVV----------REPVSSFNVS  309 (406)
Q Consensus       242 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~----------~~~i~~~~~s  309 (406)
                        ................+.+.++++      +.++...++.+..+|...+.........          ......+.++
T Consensus       100 ~~~~~~~~~~~~~~~~n~i~~~~~g~------~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~  173 (302)
T d2p4oa1         100 DGTVETLLTLPDAIFLNGITPLSDTQ------YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF  173 (302)
T ss_dssp             TSCEEEEEECTTCSCEEEEEESSSSE------EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE
T ss_pred             ccceeeccccCCccccceeEEccCCC------EEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc
Confidence              222222222344567888999886      3445567788999998876543322211          1234556665


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCceEEEEee-cccccceEEEEEcCCCCeEEEEECCCcEEEEEec
Q 015490          310 ADGKLLAVGTASGDISIIDSSSLQVRTAVK-KAHLGIVTALAFSYDSRALVSASMDSSVRVTVIE  373 (406)
Q Consensus       310 p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~  373 (406)
                      . +.++++.+..+.|+.++........... .........++++++|+++++...+++|..++..
T Consensus       174 ~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~  237 (302)
T d2p4oa1         174 G-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD  237 (302)
T ss_dssp             T-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             C-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCC
Confidence            3 2344455568888888876543221111 0123446689999999988888788888888654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=4.8e-08  Score=88.90  Aligned_cols=310  Identities=14%  Similarity=0.092  Sum_probs=164.9

Q ss_pred             cCCCCCcEEEEEcCCCC-CCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEe
Q 015490           64 DDIRRNYYVVLAGGGGA-GNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWD  142 (406)
Q Consensus        64 ~~~~~~~~~~~~~ggg~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~  142 (406)
                      ..+++.+++++...... -+...  .-..+.++...+..  .++.........+....|||||+.++...++.  ||..+
T Consensus        67 ~~SpD~~~vl~~~~~~~~~r~s~--~~~~~i~d~~~~~~--~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~n--l~~~~  140 (465)
T d1xfda1          67 EISPDREYALFSYNVEPIYQHSY--TGYYVLSKIPHGDP--QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENN--IYYCA  140 (465)
T ss_dssp             EECTTSSEEEEEESCCCCSSSCC--CSEEEEEESSSCCC--EECCCTTCCSCCCSBCCBCSSTTCEEEEETTE--EEEES
T ss_pred             EECCCCCeEEEEEcccceeEeec--cccEEEEEccCCce--eeccCccCCccccceeeeccCCceEEEEecce--EEEEe
Confidence            35677788877643221 11111  22455556554332  22222233345566789999999999988775  56566


Q ss_pred             cccccceeecceeccceeee-------cccccCcEEEEEECCCCCEEEEeeCC-C-------------------------
Q 015490          143 EVENTEIRRLGVKISEKVLS-------QLENVGQQLALTFDSEGTIFAAGSEN-G-------------------------  189 (406)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~s~~g~~l~~~~~d-g-------------------------  189 (406)
                      ...+...+............       ..+....-..+.|||||++||....| .                         
T Consensus       141 ~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~  220 (465)
T d1xfda1         141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK  220 (465)
T ss_dssp             SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred             cCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccc
Confidence            55444333221110000100       00011223578899999999986422 1                         


Q ss_pred             --------eEEEEeCCCcceEeeeec------cCCceeEEEEccCCCEEEEEeC-C---CCEEEEEcCCCeeeeecccCC
Q 015490          190 --------NLRVFKWPSLEIILNESE------AHASVKDLSFSPDGKFLVSLGN-R---GPGRVWDLASSAVATPLAKEN  251 (406)
Q Consensus       190 --------~i~vwd~~~~~~~~~~~~------~~~~i~~~~~s~~~~~l~s~s~-d---~~i~iwd~~~~~~~~~~~~~~  251 (406)
                              .+.++|+.++........      ...-+..+.|+++++.++.... +   ..+.++|..+++....+....
T Consensus       221 ~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~  300 (465)
T d1xfda1         221 AGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES  300 (465)
T ss_dssp             TTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC
T ss_pred             cCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcC
Confidence                    345555544432211111      1113677899999886655432 2   247889999987765543322


Q ss_pred             cce----EEEEEEEcCCCCceEEEEEEEc-CCCcEEEEEeCC------CceEEEEeeecCCCeEEE-EEcCCCCEEEE-E
Q 015490          252 DEL----FASCRFSPLNNEDYVLYIAAIT-DRGASIVTWNTT------TWKRIRTKQVVREPVSSF-NVSADGKLLAV-G  318 (406)
Q Consensus       252 ~~~----~~~~~~~~~~~~~~~l~~~~~~-~~~~~i~~~d~~------~~~~~~~~~~~~~~i~~~-~~sp~~~~l~~-~  318 (406)
                      ...    .....|+++++.  .+++..+. ++-+.++.+++.      .++....+....-.|..+ .|+++++.|+. +
T Consensus       301 ~~wv~~~~~~p~~~~dg~~--~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a  378 (465)
T d1xfda1         301 EAWLHRQNEEPVFSKDGRK--FFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLS  378 (465)
T ss_dssp             SSCCCCCCCCCEECTTSCS--EEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEE
T ss_pred             CceEeccCCceeEccCCCe--eEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEE
Confidence            221    124678999986  33332321 222334443321      233334444444556665 68888877754 4


Q ss_pred             eCCC----cEEEEECCCceEEEEee--cccccceEEEEEcCCCCeEEEEECC---CcEEEEEecCCcCCCCc
Q 015490          319 TASG----DISIIDSSSLQVRTAVK--KAHLGIVTALAFSYDSRALVSASMD---SSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       319 ~~dg----~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~s~s~d---g~i~iw~~~~~~~~~~~  381 (406)
                      ..++    .++-.++........+.  ........++.|||++++++.....   -.+.+++..+++.+..+
T Consensus       379 ~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~L  450 (465)
T d1xfda1         379 TEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDL  450 (465)
T ss_dssp             SSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEE
T ss_pred             eCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecCCCCeEEEEECCCCCEEEEE
Confidence            3332    24444554433322221  1234456799999999998844332   45888888888776544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.97  E-value=5.4e-07  Score=77.58  Aligned_cols=208  Identities=14%  Similarity=0.072  Sum_probs=133.5

Q ss_pred             cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCC----CCEEEEEcCCCeee
Q 015490          169 QQLALTFDSEGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNR----GPGRVWDLASSAVA  244 (406)
Q Consensus       169 ~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d----~~i~iwd~~~~~~~  244 (406)
                      ....++|.++|+++++-...+.|..|+.++++..............+++++||+++++...+    +.+...+.......
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~  120 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ  120 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceee
Confidence            34688999999988887788999999987776655555555578899999999977765432    23445555444433


Q ss_pred             eeccc-CCcceEEEEEEEcCCCCceEEEEEEEc----CCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEE-
Q 015490          245 TPLAK-ENDELFASCRFSPLNNEDYVLYIAAIT----DRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVG-  318 (406)
Q Consensus       245 ~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~-  318 (406)
                      ..... ........+.+.++|+    +++....    ...+.+..++....... .+...-.....++|+|+++.|+++ 
T Consensus       121 ~~~~~~~~~~~~nd~~~d~~G~----l~vtd~~~~~~~~~g~v~~~~~dg~~~~-~~~~~~~~pnGia~s~dg~~lyvad  195 (319)
T d2dg1a1         121 DIIEDLSTAYCIDDMVFDSKGG----FYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTE  195 (319)
T ss_dssp             EEECSSSSCCCEEEEEECTTSC----EEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEE
T ss_pred             eeccCCCcccCCcceeEEeccc----eeecccccccccCcceeEEEecccceeE-EEeeccceeeeeeeccccceEEEec
Confidence            32221 2233466788999987    2332211    11345777776554332 222222345789999999977655 


Q ss_pred             eCCCcEEEEECCCc-eEE---E-Ee--ecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCch
Q 015490          319 TASGDISIIDSSSL-QVR---T-AV--KKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLN  382 (406)
Q Consensus       319 ~~dg~i~i~d~~~~-~~~---~-~~--~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~  382 (406)
                      +..+.|+.|++... ...   . ..  ..........+++.++|++.++....+.|.+++ .+++.+..+.
T Consensus       196 ~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~-p~G~~l~~i~  265 (319)
T d2dg1a1         196 TTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFN-KRGYPIGQIL  265 (319)
T ss_dssp             GGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEEC-TTSCEEEEEE
T ss_pred             ccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEEC-CCCcEEEEEe
Confidence            44788999987632 111   1 11  001122356899999999888888899999999 4677665543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.96  E-value=2.8e-06  Score=71.99  Aligned_cols=220  Identities=15%  Similarity=0.084  Sum_probs=143.2

Q ss_pred             eEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeC
Q 015490          117 YRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKW  196 (406)
Q Consensus       117 ~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~  196 (406)
                      .+..|.+....|....-...+|+.++..+++.             ..+.....+.++++.++|.++++ +.+ .+.++|.
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~-------------~~~~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~   85 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRK-------------TVHALPFMGSALAKISDSKQLIA-SDD-GLFLRDT   85 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-------------EEEECSSCEEEEEEEETTEEEEE-ETT-EEEEEET
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeE-------------EEEECCCCcEEEEEecCCCEEEE-EeC-ccEEeec
Confidence            45678876666665542333788887654321             12233456788999999877765 444 5889999


Q ss_pred             CCcceEeeeecc--C--CceeEEEEccCCCEEEEEeC----CCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCce
Q 015490          197 PSLEIILNESEA--H--ASVKDLSFSPDGKFLVSLGN----RGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDY  268 (406)
Q Consensus       197 ~~~~~~~~~~~~--~--~~i~~~~~s~~~~~l~s~s~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (406)
                      .+++........  .  ..++++.+.|+|++.++...    .+.-.+|.+..++.......  -.....++|+++++.  
T Consensus        86 ~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~--~~~~Ng~~~s~d~~~--  161 (295)
T d2ghsa1          86 ATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD--ISIPNSICFSPDGTT--  161 (295)
T ss_dssp             TTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE--ESSEEEEEECTTSCE--
T ss_pred             ccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec--cCCcceeeecCCCce--
Confidence            888754322211  1  16889999999997665542    23456777777765444322  223567899999985  


Q ss_pred             EEEEEEEcCCCcEEEEEeCCCc------eE--EEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeec
Q 015490          269 VLYIAAITDRGASIVTWNTTTW------KR--IRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKK  340 (406)
Q Consensus       269 ~l~~~~~~~~~~~i~~~d~~~~------~~--~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  340 (406)
                         +..+.+..+.|+.+++...      +.  ........+....+++..+|++.++.-..+.|..||. .++.+..+. 
T Consensus       162 ---l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~-  236 (295)
T d2ghsa1         162 ---GYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE-  236 (295)
T ss_dssp             ---EEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE-
T ss_pred             ---EEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEec-
Confidence               3445566788988876421      11  1122223355788999999998877777888999995 588888875 


Q ss_pred             ccccceEEEEEc-CCCCeEEE
Q 015490          341 AHLGIVTALAFS-YDSRALVS  360 (406)
Q Consensus       341 ~~~~~v~~~~~s-p~~~~l~s  360 (406)
                      .....+++++|- +|.+.|+.
T Consensus       237 lP~~~~T~~~FGG~d~~~Lyv  257 (295)
T d2ghsa1         237 VPGKQTTCPAFIGPDASRLLV  257 (295)
T ss_dssp             CSCSBEEEEEEESTTSCEEEE
T ss_pred             CCCCceEEEEEeCCCCCEEEE
Confidence            344568999996 56665543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.94  E-value=1.2e-07  Score=79.82  Aligned_cols=229  Identities=15%  Similarity=0.084  Sum_probs=125.4

Q ss_pred             EEccC--CCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeC-C-----CeE
Q 015490          120 AIHPH--GDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSE-N-----GNL  191 (406)
Q Consensus       120 ~~sp~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-d-----g~i  191 (406)
                      ..+||  |+.++..+++  .||..+...++. +++           ..+.+.+...+|||||+.||.... +     ..|
T Consensus         5 ~~sPdi~G~~v~f~~~~--dl~~~d~~~g~~-~~L-----------t~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i   70 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCCD--DLWEHDLKSGST-RKI-----------VSNLGVINNARFFPDGRKIAIRVMRGSSLNTADL   70 (281)
T ss_dssp             CEEEEEETTEEEEEETT--EEEEEETTTCCE-EEE-----------ECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEE
T ss_pred             ccCCCCCCCEEEEEeCC--cEEEEECCCCCE-EEE-----------ecCCCcccCEEECCCCCEEEEEEeeCCCCCceEE
Confidence            46788  9999888766  478787764432 111           124466788999999999886532 2     247


Q ss_pred             EEEeCCCcceEeeeecc------CCceeEEEEccCCCEEEEEeCC------CCEEEEEcCCCeeeeecccCCcceEEEEE
Q 015490          192 RVFKWPSLEIILNESEA------HASVKDLSFSPDGKFLVSLGNR------GPGRVWDLASSAVATPLAKENDELFASCR  259 (406)
Q Consensus       192 ~vwd~~~~~~~~~~~~~------~~~i~~~~~s~~~~~l~s~s~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  259 (406)
                      .+++..+++........      ........|+|||+.|+.....      ..+...+...+..........     ...
T Consensus        71 ~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~  145 (281)
T d1k32a2          71 YFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPA-----THI  145 (281)
T ss_dssp             EEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSC-----SEE
T ss_pred             EEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCCcc-----cee
Confidence            78887777655322111      1145678999999998876432      234555665554433222211     123


Q ss_pred             EEcCCCCceEEEEEEEcCCC----------cEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC--CCcEEEE
Q 015490          260 FSPLNNEDYVLYIAAITDRG----------ASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA--SGDISII  327 (406)
Q Consensus       260 ~~~~~~~~~~l~~~~~~~~~----------~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~--dg~i~i~  327 (406)
                      +.+++..    ++.......          .............. .............++++. .+.....  ...|.++
T Consensus       146 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~  219 (281)
T d1k32a2         146 LFADGRR----VIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFK-KIVDMSTHVSSPVIVGHR-IYFITDIDGFGQIYST  219 (281)
T ss_dssp             EEETTEE----EEEESCSCCTTSTTCCSTTCCEEEEEEETTEEE-EEECCSSCCEEEEEETTE-EEEEECTTSSCEEEEE
T ss_pred             eecCCCe----EEEeeccccceeeeeccCCcceeeeecccccee-eccCCccccceeeeeccc-cceecccccccceEEE
Confidence            4444432    111111110          11111111121222 222223344556666553 2223333  3458888


Q ss_pred             ECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490          328 DSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       328 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                      |+.+........ ....  ....|+|||+.|+.. .++.|+++|+.+++.
T Consensus       220 d~~g~~~~~lt~-~~~~--~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~  265 (281)
T d1k32a2         220 DLDGKDLRKHTS-FTDY--YPRHLNTDGRRILFS-KGGSIYIFNPDTEKI  265 (281)
T ss_dssp             ETTSCSCEECCC-CCSS--CEEEEEESSSCEEEE-ETTEEEEECTTTCCE
T ss_pred             eCCCCceEEeec-CCCc--ccccCcCCCCEEEEE-eCCEEEEEECCCCCE
Confidence            988766543322 2222  234689999998764 578899999987764

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=4.2e-08  Score=89.27  Aligned_cols=227  Identities=11%  Similarity=0.057  Sum_probs=134.9

Q ss_pred             EEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEee---------CCCe
Q 015490          120 AIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGS---------ENGN  190 (406)
Q Consensus       120 ~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~---------~dg~  190 (406)
                      .|.+++.++....++.  |+.++..+++....+..    .   .+ ....+....||||+++++...         ..+.
T Consensus        23 ~W~~~~~~~~~~~~g~--i~~~~~~~~~~~~l~~~----~---~~-~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~   92 (465)
T d1xfda1          23 KWISDTEFIYREQKGT--VRLWNVETNTSTVLIEG----K---KI-ESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY   92 (465)
T ss_dssp             CBSSSSCBCCCCSSSC--EEEBCGGGCCCEEEECT----T---TT-TTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred             EEeCCCcEEEEeCCCc--EEEEECCCCCEEEEEcC----c---cc-cccccceeEECCCCCeEEEEEcccceeEeecccc
Confidence            5788887665444555  45566554433221111    0   01 112456778999999887763         3578


Q ss_pred             EEEEeCCCcceEeeee--ccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcc---------------
Q 015490          191 LRVFKWPSLEIILNES--EAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDE---------------  253 (406)
Q Consensus       191 i~vwd~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~---------------  253 (406)
                      +.++|+.++.......  .....+....|||||+.||... ++.|.+.+..++...+........               
T Consensus        93 ~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~  171 (465)
T d1xfda1          93 YVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEI  171 (465)
T ss_dssp             EEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTT
T ss_pred             EEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhh
Confidence            9999998877543222  2233567799999999998876 567888888776655443322111               


Q ss_pred             --eEEEEEEEcCCCCceEEEEEEEcCC------------------------------CcEEEEEeCCCceEEEEeee---
Q 015490          254 --LFASCRFSPLNNEDYVLYIAAITDR------------------------------GASIVTWNTTTWKRIRTKQV---  298 (406)
Q Consensus       254 --~~~~~~~~~~~~~~~~l~~~~~~~~------------------------------~~~i~~~d~~~~~~~~~~~~---  298 (406)
                        .-..+.|||++++  ++|...-.+.                              ...+.++|+.++........   
T Consensus       172 ~~~~~a~~WSPDgk~--iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~  249 (465)
T d1xfda1         172 LKTHIAHWWSPDGTR--LAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDD  249 (465)
T ss_dssp             SSSSEEEEECTTSSE--EEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCC
T ss_pred             ccccceEEECCCCCe--EEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCc
Confidence              1246789999996  3332111000                              12355666655432221111   


Q ss_pred             ---cCCCeEEEEEcCCCCEEEEEeC-C---CcEEEEECCCceEEEEeecccccce----EEEEEcCCCCeEE
Q 015490          299 ---VREPVSSFNVSADGKLLAVGTA-S---GDISIIDSSSLQVRTAVKKAHLGIV----TALAFSYDSRALV  359 (406)
Q Consensus       299 ---~~~~i~~~~~sp~~~~l~~~~~-d---g~i~i~d~~~~~~~~~~~~~~~~~v----~~~~~sp~~~~l~  359 (406)
                         ....+..+.|+|++++++.... +   ..+.++|..+++....+.....+.|    ....|+|||+.++
T Consensus       250 ~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~  321 (465)
T d1xfda1         250 PRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFF  321 (465)
T ss_dssp             GGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEE
T ss_pred             CccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeE
Confidence               1124678999999987666543 2   2588899999887665542333333    3468999998643

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.92  E-value=3.3e-07  Score=78.69  Aligned_cols=224  Identities=13%  Similarity=0.066  Sum_probs=131.7

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeeccccc--
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENV--  167 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  167 (406)
                      .++.++..+....................++|.+++..++++.... .+..++....... .+..        .....  
T Consensus        47 ~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~-~i~~~~~~g~~~~-~~~~--------~~~g~~~  116 (314)
T d1pjxa_          47 EILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRL-GLLVVQTDGTFEE-IAKK--------DSEGRRM  116 (314)
T ss_dssp             EEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTT-EEEEEETTSCEEE-CCSB--------CTTSCBC
T ss_pred             EEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCC-eEEEEeCCCcEEE-EEec--------ccccccc
Confidence            5778887764321111111111223467899999998877775322 4555665432111 1100        00011  


Q ss_pred             CcEEEEEECCCCCEEEEeeC---------------CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCC----EE-EEE
Q 015490          168 GQQLALTFDSEGTIFAAGSE---------------NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGK----FL-VSL  227 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~~~---------------dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~----~l-~s~  227 (406)
                      ...+.+++.++|++.++-..               .|.|..++. .++.. .+...-...+.++|+|++.    .| ++-
T Consensus       117 ~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~-~~~~~~~~pNGi~~~~d~d~~~~~lyv~d  194 (314)
T d1pjxa_         117 QGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAE  194 (314)
T ss_dssp             BCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEE
T ss_pred             CCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCcee-EeeCCcceeeeeEECCCCCcceeEEEEEe
Confidence            23577899999988776421               234544443 23332 2222223457899998764    34 444


Q ss_pred             eCCCCEEEEEcCCCeee------eecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCC
Q 015490          228 GNRGPGRVWDLASSAVA------TPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVRE  301 (406)
Q Consensus       228 s~d~~i~iwd~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~  301 (406)
                      +..+.|..||+.....+      ..+..........+++..+++    +|++  ....+.|.+||.+.++....+..+..
T Consensus       195 ~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn----lyVa--~~~~g~I~~~dp~~g~~~~~i~~p~~  268 (314)
T d1pjxa_         195 TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN----LLVA--NWGSSHIEVFGPDGGQPKMRIRCPFE  268 (314)
T ss_dssp             TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC----EEEE--EETTTEEEEECTTCBSCSEEEECSSS
T ss_pred             ecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCc----EEEE--EcCCCEEEEEeCCCCEEEEEEECCCC
Confidence            66788988887543222      122222233456789999887    3333  34568999999998877666666666


Q ss_pred             CeEEEEEcCCCCEEE-EEeCCCcEEEEECCC
Q 015490          302 PVSSFNVSADGKLLA-VGTASGDISIIDSSS  331 (406)
Q Consensus       302 ~i~~~~~sp~~~~l~-~~~~dg~i~i~d~~~  331 (406)
                      ..++++|.|+++.|+ +.+.+|.|..+++..
T Consensus       269 ~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         269 KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            789999999998554 455678888888753

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.76  E-value=3.9e-06  Score=70.16  Aligned_cols=224  Identities=11%  Similarity=0.079  Sum_probs=122.1

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe--cC---CeEEEEEecccccceeecceeccceeeecc
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL--QN---SCRLFEWDEVENTEIRRLGVKISEKVLSQL  164 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~--~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (406)
                      .++.++..+.     ....+..+.+.+...+|||||+.|+...  ++   ...||.++...++.... ...    .....
T Consensus        22 dl~~~d~~~g-----~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l-t~~----~~~~~   91 (281)
T d1k32a2          22 DLWEHDLKSG-----STRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI-TYF----SGKST   91 (281)
T ss_dssp             EEEEEETTTC-----CEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC-CCC----CEEEE
T ss_pred             cEEEEECCCC-----CEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEe-eec----CCCcc
Confidence            4777777652     4456777888899999999999998764  22   34688888765543322 110    00001


Q ss_pred             cccCcEEEEEECCCCCEEEEeeC------CCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEE-eCCC------
Q 015490          165 ENVGQQLALTFDSEGTIFAAGSE------NGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSL-GNRG------  231 (406)
Q Consensus       165 ~~~~~v~~~~~s~~g~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-s~d~------  231 (406)
                      ..........|+|||+.++....      ...+...+...+......   ...... .|.+++..++.. ..+.      
T Consensus        92 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  167 (281)
T d1k32a2          92 GRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN---LGPATH-ILFADGRRVIGRNTFELPHWKGY  167 (281)
T ss_dssp             TTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC---SCSCSE-EEEETTEEEEEESCSCCTTSTTC
T ss_pred             CccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEec---CCccce-eeecCCCeEEEeeccccceeeee
Confidence            11123467899999998887533      223555555444332221   122233 344444444433 2211      


Q ss_pred             -----CEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEE
Q 015490          232 -----PGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSF  306 (406)
Q Consensus       232 -----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~  306 (406)
                           ...................  .......++++.     ++..........|+++|+.+.+.. .+..+. .....
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~d~~g~~~~-~lt~~~-~~~~~  238 (281)
T d1k32a2         168 RGGTRGKIWIEVNSGAFKKIVDMS--THVSSPVIVGHR-----IYFITDIDGFGQIYSTDLDGKDLR-KHTSFT-DYYPR  238 (281)
T ss_dssp             CSTTCCEEEEEEETTEEEEEECCS--SCCEEEEEETTE-----EEEEECTTSSCEEEEEETTSCSCE-ECCCCC-SSCEE
T ss_pred             ccCCcceeeeeccccceeeccCCc--cccceeeeeccc-----cceecccccccceEEEeCCCCceE-EeecCC-Ccccc
Confidence                 1222222222222222211  112234455432     223333445668999999876543 333222 22335


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCceEEEE
Q 015490          307 NVSADGKLLAVGTASGDISIIDSSSLQVRTA  337 (406)
Q Consensus       307 ~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~  337 (406)
                      .|+|||+.|+.. .++.|+++|+.+++....
T Consensus       239 ~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i  268 (281)
T d1k32a2         239 HLNTDGRRILFS-KGGSIYIFNPDTEKIEKI  268 (281)
T ss_dssp             EEEESSSCEEEE-ETTEEEEECTTTCCEEEC
T ss_pred             cCcCCCCEEEEE-eCCEEEEEECCCCCEEEe
Confidence            689999998874 478899999988876544

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.49  E-value=0.00019  Score=59.15  Aligned_cols=204  Identities=10%  Similarity=-0.023  Sum_probs=129.4

Q ss_pred             CcEEEEEECCCCCEEEEe-eCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEe-CCCCEEEEEcCCCeeee
Q 015490          168 GQQLALTFDSEGTIFAAG-SENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLG-NRGPGRVWDLASSAVAT  245 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s-~d~~i~iwd~~~~~~~~  245 (406)
                      ..+..++|....+.++.. ..++.|+..+++.......+......+.++++..-+..|..+. ..+.|.+.++.......
T Consensus        36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~  115 (263)
T d1npea_          36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (263)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEE
Confidence            456788998877666655 4567899888876554433433334678899987666666554 56789999987554332


Q ss_pred             ecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEe-CCCcE
Q 015490          246 PLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGT-ASGDI  324 (406)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~i  324 (406)
                      .+. ........+++.|....   +|+...+.....|.-.++............-.....+++++.++.|+.+. ..+.|
T Consensus       116 l~~-~~l~~p~~l~vdp~~g~---ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I  191 (263)
T d1npea_         116 LFD-TGLVNPRGIVTDPVRGN---LYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRA  191 (263)
T ss_dssp             EEC-SSCSSEEEEEEETTTTE---EEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             Eec-ccccCCcEEEEecccCc---EEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEE
Confidence            222 22234678999998874   55555444455676667765433322222224568999998888776664 47789


Q ss_pred             EEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCC
Q 015490          325 SIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKS  378 (406)
Q Consensus       325 ~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~  378 (406)
                      ...|+........+. +.. ...++++. ++....+-...+.|...|..+++.+
T Consensus       192 ~~~~~~g~~~~~v~~-~~~-~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~  242 (263)
T d1npea_         192 ECLNPAQPGRRKVLE-GLQ-YPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEM  242 (263)
T ss_dssp             EEEETTEEEEEEEEE-CCC-SEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEEECCCCCeEEEEC-CCC-CcEEEEEE-CCEEEEEECCCCEEEEEECCCCccc
Confidence            999997554433332 332 34577775 3444444446678888888777653

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.42  E-value=0.00013  Score=61.47  Aligned_cols=201  Identities=12%  Similarity=0.022  Sum_probs=127.4

Q ss_pred             EEEECCC-CCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeeeeccc-
Q 015490          172 ALTFDSE-GTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVATPLAK-  249 (406)
Q Consensus       172 ~~~~s~~-g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-  249 (406)
                      +..|.+. +.++.+--..+.|..||..+++... + .....+.++++.++|+++++ +.+ .+.++|..+++....... 
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~-~-~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~   97 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKTV-H-ALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELE   97 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-E-ECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSS
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEEE-E-ECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeee
Confidence            4568774 4555554567899999998876542 2 23346789999999876654 444 599999998875443221 


Q ss_pred             --CCcceEEEEEEEcCCCCceEEEEEEEc--CCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEe-CCCcE
Q 015490          250 --ENDELFASCRFSPLNNEDYVLYIAAIT--DRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGT-ASGDI  324 (406)
Q Consensus       250 --~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~i  324 (406)
                        .....+..+.+.|+|+-    ++....  ...+.-.+|.+..++........ .....++|+++++.++.+. ..+.|
T Consensus        98 ~~~~~~~~nd~~vd~~G~i----w~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~-~~~Ng~~~s~d~~~l~~~dt~~~~I  172 (295)
T d2ghsa1          98 SDLPGNRSNDGRMHPSGAL----WIGTMGRKAETGAGSIYHVAKGKVTKLFADI-SIPNSICFSPDGTTGYFVDTKVNRL  172 (295)
T ss_dssp             TTCTTEEEEEEEECTTSCE----EEEEEETTCCTTCEEEEEEETTEEEEEEEEE-SSEEEEEECTTSCEEEEEETTTCEE
T ss_pred             cCCCcccceeeEECCCCCE----EEEeccccccccceeEeeecCCcEEEEeecc-CCcceeeecCCCceEEEeeccccee
Confidence              22335778889999872    222221  11233445555555544444333 3467899999998766554 47789


Q ss_pred             EEEECCCc------eE-EEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCch
Q 015490          325 SIIDSSSL------QV-RTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGLN  382 (406)
Q Consensus       325 ~i~d~~~~------~~-~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~~  382 (406)
                      ..|++...      +. ......+..+....+++..+|++.++.-..+.|..|| .+++.+..++
T Consensus       173 ~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~  236 (295)
T d2ghsa1         173 MRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYE  236 (295)
T ss_dssp             EEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEE
T ss_pred             eEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEec
Confidence            98887421      11 1111113345578999999999888777778899999 4666655543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.21  E-value=0.00095  Score=54.77  Aligned_cols=244  Identities=10%  Similarity=0.035  Sum_probs=142.0

Q ss_pred             EEEEEecCCCCccc-cceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccC
Q 015490           90 LLSHFDFASNSLSD-QPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVG  168 (406)
Q Consensus        90 ~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (406)
                      .+..++.+.+.... .....+..+...+.+++|.+..+.++.+..+.-+|+..+.........+           .....
T Consensus        11 ~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~-----------~~~~~   79 (263)
T d1npea_          11 KIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII-----------RQDLG   79 (263)
T ss_dssp             EEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE-----------CTTCC
T ss_pred             eEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEE-----------Eeccc
Confidence            34444444433222 2223344455568889999988888877644446766665432211111           11224


Q ss_pred             cEEEEEECCCCCEEE-EeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCC-CC--EEEEEcCCCeee
Q 015490          169 QQLALTFDSEGTIFA-AGSENGNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNR-GP--GRVWDLASSAVA  244 (406)
Q Consensus       169 ~v~~~~~s~~g~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d-~~--i~iwd~~~~~~~  244 (406)
                      .+.++++..-+..|+ +-...+.|.+.+++..............+..+++.|...+++..... +.  |.--++......
T Consensus        80 ~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~  159 (263)
T d1npea_          80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR  159 (263)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE
T ss_pred             cccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCce
Confidence            578888876555554 44557799999987654432222333468899999987777755432 23  444455433322


Q ss_pred             eecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEe-CCCc
Q 015490          245 TPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGT-ASGD  323 (406)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~  323 (406)
                      . +....-.....+++.+.++.   +|++  ....+.|...|+........+... ....++++.  +.+|+... ..+.
T Consensus       160 ~-i~~~~~~~P~glaiD~~~~~---lYw~--d~~~~~I~~~~~~g~~~~~v~~~~-~~P~~lav~--~~~lYwtd~~~~~  230 (263)
T d1npea_         160 I-LAQDNLGLPNGLTFDAFSSQ---LCWV--DAGTHRAECLNPAQPGRRKVLEGL-QYPFAVTSY--GKNLYYTDWKTNS  230 (263)
T ss_dssp             E-EECTTCSCEEEEEEETTTTE---EEEE--ETTTTEEEEEETTEEEEEEEEECC-CSEEEEEEE--TTEEEEEETTTTE
T ss_pred             e-eeeecccccceEEEeecCcE---EEEE--eCCCCEEEEEECCCCCeEEEECCC-CCcEEEEEE--CCEEEEEECCCCE
Confidence            2 22222234568999988774   4443  355688999999765544334333 334678776  45565554 5688


Q ss_pred             EEEEECCCceEEEEeecccccceEEEEEcC
Q 015490          324 ISIIDSSSLQVRTAVKKAHLGIVTALAFSY  353 (406)
Q Consensus       324 i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp  353 (406)
                      |...|..+++....+.........++...+
T Consensus       231 I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~  260 (263)
T d1npea_         231 VIAMDLAISKEMDTFHPHKQTRLYGITIAL  260 (263)
T ss_dssp             EEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred             EEEEECCCCccceEECCCCCCCcceEEEeC
Confidence            999999988887766423333444555443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.20  E-value=9.3e-05  Score=63.89  Aligned_cols=187  Identities=13%  Similarity=0.176  Sum_probs=120.9

Q ss_pred             EEEeeCCCeEEEEeCCCcceEeeeecc---------------------------------------CCcee--EEEEc--
Q 015490          182 FAAGSENGNLRVFKWPSLEIILNESEA---------------------------------------HASVK--DLSFS--  218 (406)
Q Consensus       182 l~~~~~dg~i~vwd~~~~~~~~~~~~~---------------------------------------~~~i~--~~~~s--  218 (406)
                      |.+|+..|.|+|+-+.+++.+..+.--                                       .+...  .+.+.  
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            567888999999988777665443100                                       00111  33343  


Q ss_pred             -cCCCEEEEEe-CCCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCC-----------------C
Q 015490          219 -PDGKFLVSLG-NRGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDR-----------------G  279 (406)
Q Consensus       219 -~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------~  279 (406)
                       +||++++... .+..|.+-|+++.+..+.+.......+..++..++.+.   .|+++.+..                 .
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T---~YV~~~~e~~vP~pndg~~l~d~~~y~  172 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRS---NYVFCNGEDETPLVNDGTNMEDVANYV  172 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBC---SEEEEEECSCEESSCSSSSTTCGG-EE
T ss_pred             ccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCe---EEEEccCccccccCCCCccccchhhcc
Confidence             3788887776 57789999999999877555555555667777666554   234443321                 1


Q ss_pred             cEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCC--------------------------------------
Q 015490          280 ASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTAS--------------------------------------  321 (406)
Q Consensus       280 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d--------------------------------------  321 (406)
                      +.+..+|..+.+...+.... +....+.++++|+++++.+.+                                      
T Consensus       173 ~~~t~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ei  251 (459)
T d1fwxa2         173 NVFTAVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL  251 (459)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred             eEEEEEecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEe
Confidence            45778999998887777655 456789999999999987743                                      


Q ss_pred             CcEEEEECCCc---eEEEEeecccccceEEEEEcCCCCeEEEEE-CCCcEEEEEecC
Q 015490          322 GDISIIDSSSL---QVRTAVKKAHLGIVTALAFSYDSRALVSAS-MDSSVRVTVIED  374 (406)
Q Consensus       322 g~i~i~d~~~~---~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s-~dg~i~iw~~~~  374 (406)
                      +.+.+.|.++.   ..+..+.  -......+..+|||+++++++ .+.++.|.|++.
T Consensus       252 ngV~VVD~~~~~~~~v~~yIP--VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~K  306 (459)
T d1fwxa2         252 NGVKVVDGRKEASSLFTRYIP--IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR  306 (459)
T ss_dssp             TTEEEEECSGG--CSSEEEEE--EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred             CCceeecccccCCcceeEEEe--cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence            12333443321   1122221  122356789999999987655 688999999874

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.11  E-value=0.00013  Score=62.97  Aligned_cols=226  Identities=10%  Similarity=0.074  Sum_probs=135.7

Q ss_pred             EEEEcc---CCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCC--CCEEEEeeCC----
Q 015490          118 RMAIHP---HGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSE--GTIFAAGSEN----  188 (406)
Q Consensus       118 ~~~~sp---~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--g~~l~~~~~d----  188 (406)
                      .+.+..   ||+++++....+-||-.++....+....+.          +.....+..++..++  -.+++.++.+    
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~----------iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~  158 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILE----------IPNAKGIHGLRPQKWPRSNYVFCNGEDETPL  158 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEE----------CSSCCSEEEEEECCSSBCSEEEEEECSCEES
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEe----------cCCCCCCceeecccCCCeEEEEccCcccccc
Confidence            555544   889999988666688888877655433222          223345566666543  4566665542    


Q ss_pred             --------------CeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeCCC---------------CEEEEEc-
Q 015490          189 --------------GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGNRG---------------PGRVWDL-  238 (406)
Q Consensus       189 --------------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~---------------~i~iwd~-  238 (406)
                                    +.+.++|.++.+....+.-. .....+.++++|+++++.+.+.               .+.+++. 
T Consensus       159 pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~  237 (459)
T d1fwxa2         159 VNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIA  237 (459)
T ss_dssp             SCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHH
T ss_pred             CCCCccccchhhcceEEEEEecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechH
Confidence                          34678898888877666543 3567899999999998877431               1334443 


Q ss_pred             ----------------------CCC---eeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCce--
Q 015490          239 ----------------------ASS---AVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWK--  291 (406)
Q Consensus       239 ----------------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~--  291 (406)
                                            +..   .....+...  .....+..+|+|++     +++++..+..+.++|++...  
T Consensus       238 rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVp--KsPHGV~vSPDGKy-----i~VaGKLs~tVSViD~~Ki~~~  310 (459)
T d1fwxa2         238 EIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA--NNPHGCNMAPDKKH-----LCVAGKLSPTVTVLDVTRFDAV  310 (459)
T ss_dssp             HHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEE--SSCCCEEECTTSSE-----EEEECTTSSBEEEEEGGGHHHH
T ss_pred             HhHHhhhcCCcEEeCCceeecccccCCcceeEEEecC--CCCCceEECCCCCE-----EEEeCCcCCcEEEEEehhhhhh
Confidence                                  210   011111111  11346889999995     78888999999999997421  


Q ss_pred             ----------EEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCc----------eEEEEee----cccccceE
Q 015490          292 ----------RIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSL----------QVRTAVK----KAHLGIVT  347 (406)
Q Consensus       292 ----------~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~----------~~~~~~~----~~~~~~v~  347 (406)
                                ...+... .......+|+.+|+-..+---|..|.-|++...          ..+..+.    .+|.....
T Consensus       311 ~~~~~~~~~~~~~e~el-glgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~  389 (459)
T d1fwxa2         311 FYENADPRSAVVAEPEL-GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVM  389 (459)
T ss_dssp             HHSCC-GGGGEEECCBC-CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETT
T ss_pred             hcccCCccccEEeeccc-CcCccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCc
Confidence                      1122221 233467789988854444456999999998532          3344442    12221111


Q ss_pred             EEEEcCCCCeEEEEE
Q 015490          348 ALAFSYDSRALVSAS  362 (406)
Q Consensus       348 ~~~~sp~~~~l~s~s  362 (406)
                      +-...|||++|++..
T Consensus       390 g~t~~~dgk~l~~~n  404 (459)
T d1fwxa2         390 GETLDATNDWLVCLS  404 (459)
T ss_dssp             TTSTTCCSSEEEEEE
T ss_pred             CCcCCCCCCEEEEec
Confidence            112367888888875

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.00  E-value=0.0024  Score=52.02  Aligned_cols=234  Identities=10%  Similarity=0.090  Sum_probs=142.4

Q ss_pred             eEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCCCeEEEEeC
Q 015490          117 YRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSENGNLRVFKW  196 (406)
Q Consensus       117 ~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~vwd~  196 (406)
                      .+.-.+|..+.|+.-+...+++++++.              ...++.+.....|.-=.|-.+. .|+..+ +..|+-|++
T Consensus        66 dsAIMhP~~~IiALrag~~LQiFnlet--------------K~klks~~~~e~VvfWkWis~~-~L~lVT-~taVYHW~~  129 (327)
T d1utca2          66 DSAIMNPASKVIALKAGKTLQIFNIEM--------------KSKMKAHTMTDDVTFWKWISLN-TVALVT-DNAVYHWSM  129 (327)
T ss_dssp             SEEEECSSSSEEEEEETTEEEEEETTT--------------TEEEEEEECSSCCCEEEESSSS-EEEEEC-SSEEEEEES
T ss_pred             hhhhcCCCCcEEEEecCCeEEEEehhH--------------hhhhceEEcCCCcEEEEecCCC-EEEEEc-CCceEEEcc
Confidence            355678988888777778888887763              3334444455566666776554 444444 357999999


Q ss_pred             CCcc-eEeeeeccCC----ceeEEEEccCCCEEEEEe---C----CCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCC
Q 015490          197 PSLE-IILNESEAHA----SVKDLSFSPDGKFLVSLG---N----RGPGRVWDLASSAVATPLAKENDELFASCRFSPLN  264 (406)
Q Consensus       197 ~~~~-~~~~~~~~~~----~i~~~~~s~~~~~l~s~s---~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (406)
                      +... +...+..|..    .|-.-..+++.++++..+   .    .|.+.+|..+... .+.+.+| ......+.+.-+.
T Consensus       130 ~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ieGh-aa~F~~~~~~g~~  207 (327)
T d1utca2         130 EGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGH-AASFAQFKMEGNA  207 (327)
T ss_dssp             SSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCS-EEEEEEECCTTCS
T ss_pred             cCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-Cccccce-eeeeEEEEcCCCC
Confidence            5433 3333333332    677777788999877654   2    3567889886543 3444443 2222222221111


Q ss_pred             CCceEEEEEEE-cCCCcEEEEEeCCCce--------EEEEeee-c---CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 015490          265 NEDYVLYIAAI-TDRGASIVTWNTTTWK--------RIRTKQV-V---REPVSSFNVSADGKLLAVGTASGDISIIDSSS  331 (406)
Q Consensus       265 ~~~~~l~~~~~-~~~~~~i~~~d~~~~~--------~~~~~~~-~---~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~  331 (406)
                       ....+++.+. +...+++++.++....        ....+.. .   ..-..++..|+.-..++.-+.-|.+++||+.+
T Consensus       208 -~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleT  286 (327)
T d1utca2         208 -EESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET  286 (327)
T ss_dssp             -SCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT
T ss_pred             -CCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEccc
Confidence             1223344333 3445789999886421        1111111 1   23346788888888999999999999999999


Q ss_pred             ceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEE
Q 015490          332 LQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVT  370 (406)
Q Consensus       332 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw  370 (406)
                      +.++..-. -....|...+-..+..-++....+|.|.--
T Consensus       287 gt~i~~nR-Is~~~iF~~a~~~~~~Gi~~VNr~GqVl~v  324 (327)
T d1utca2         287 GTCIYMNR-ISGETIFVTAPHEATAGIIGVNRKGQVLSV  324 (327)
T ss_dssp             CCEEEEEE-CCSSCEEEEEEETTTTEEEEEETTSEEEEE
T ss_pred             ccEEEEee-cCCCceEEeccCCCCceEEEECCCCeEEEE
Confidence            99988764 556667655555555556666788876543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.00  E-value=0.0038  Score=54.03  Aligned_cols=163  Identities=13%  Similarity=0.095  Sum_probs=88.6

Q ss_pred             CCcEEEEEcCCCCCCCCcC-ccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe--cCCeEEEEEecc
Q 015490           68 RNYYVVLAGGGGAGNSGIR-NAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL--QNSCRLFEWDEV  144 (406)
Q Consensus        68 ~~~~~~~~~ggg~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~--~~~~~i~~~~~~  144 (406)
                      +++.++++|-......+.. .......||+..+.|...+.. ...|.......++.+++..++.|+  ...+.+|  +..
T Consensus        30 ~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~-~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~y--d~~  106 (387)
T d1k3ia3          30 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT-VTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLY--DSS  106 (387)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE-ECSCCCSSCEEEECTTSCEEEECSSSTTCEEEE--EGG
T ss_pred             CCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCC-CCCcccceeEEEEecCCcEEEeecCCCcceeEe--cCc
Confidence            4556666553322222222 223456799998888554332 233444556778999999988886  3455554  443


Q ss_pred             cccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCC------CeEEEEeCCCcceEeeee--------ccCC
Q 015490          145 ENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSEN------GNLRVFKWPSLEIILNES--------EAHA  210 (406)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d------g~i~vwd~~~~~~~~~~~--------~~~~  210 (406)
                      +..-..          .........-.+++..+||++++.|+.+      ..+.+||..+.+-...-.        ....
T Consensus       107 ~~~w~~----------~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~  176 (387)
T d1k3ia3         107 SDSWIP----------GPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ  176 (387)
T ss_dssp             GTEEEE----------CCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT
T ss_pred             cCcccc----------cccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCccccccccccc
Confidence            322111          1111122223456778899999988653      368999987765321100        0000


Q ss_pred             ------ceeEEEEccCCCEEEEEeCCCCEEEEEcCCCee
Q 015490          211 ------SVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAV  243 (406)
Q Consensus       211 ------~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~  243 (406)
                            .-..+...++|+.+..+...+.+.+++..+...
T Consensus       177 ~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~  215 (387)
T d1k3ia3         177 GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV  215 (387)
T ss_dssp             GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred             ceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcE
Confidence                  001122345677777776666777777766543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=0.0049  Score=50.42  Aligned_cols=215  Identities=10%  Similarity=-0.039  Sum_probs=125.2

Q ss_pred             ecCCCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEE-eeCC
Q 015490          110 RTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAA-GSEN  188 (406)
Q Consensus       110 ~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~d  188 (406)
                      ......+.+++|.+..+.+.-+....-.|+..+.........      .+ ......-..+..+++.+.+..|+. -...
T Consensus        26 ~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~------~~-~~~~~~~~~p~glAvD~~~~~lY~~d~~~   98 (266)
T d1ijqa1          26 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS------YD-TVISRDIQAPDGLAVDWIHSNIYWTDSVL   98 (266)
T ss_dssp             ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------CE-EEECSSCSCCCEEEEETTTTEEEEEETTT
T ss_pred             eCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcc------eE-EEEeCCCCCcceEEEeeccceEEEEecCC
Confidence            345567789999998888887753444566554432111000      00 001112244567888765554444 4556


Q ss_pred             CeEEEEeCCCcceEeeeeccCCceeEEEEccCCCEEEEEeC--CCCEEEEEcCCCeeeeecccCCcceEEEEEEEcCCCC
Q 015490          189 GNLRVFKWPSLEIILNESEAHASVKDLSFSPDGKFLVSLGN--RGPGRVWDLASSAVATPLAKENDELFASCRFSPLNNE  266 (406)
Q Consensus       189 g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (406)
                      +.|.+.+++.................++.+|...+|.....  .+.|.-.++.......... ..-.....+++.+.++.
T Consensus        99 ~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~-~~~~~p~gl~iD~~~~~  177 (266)
T d1ijqa1          99 GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-ENIQWPNGITLDLLSGR  177 (266)
T ss_dssp             TEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC-SSCSCEEEEEEETTTTE
T ss_pred             CEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccc-cccceeeEEEeeccccE
Confidence            78999998766655444444457889999987666665543  3456666665433332222 22234578999988875


Q ss_pred             ceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecC--CCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCceEEEEee
Q 015490          267 DYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVR--EPVSSFNVSADGKLLAVGT-ASGDISIIDSSSLQVRTAVK  339 (406)
Q Consensus       267 ~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~  339 (406)
                         +|+  +....+.|...|+.............  ....++++.  +.+|+... .++.|...+..+++....+.
T Consensus       178 ---lYw--~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~~~~~  246 (266)
T d1ijqa1         178 ---LYW--VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA  246 (266)
T ss_dssp             ---EEE--EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             ---EEE--ecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCcceEEEE
Confidence               443  34557889999987644333332222  335667766  34555554 56788888887776655554

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=0.006  Score=49.86  Aligned_cols=207  Identities=11%  Similarity=-0.033  Sum_probs=124.5

Q ss_pred             ccCcEEEEEECCCCCEEEEee-CCCeEEEEeCCCcc----eEeeeeccCCceeEEEEccCCCEEEEEe-CCCCEEEEEcC
Q 015490          166 NVGQQLALTFDSEGTIFAAGS-ENGNLRVFKWPSLE----IILNESEAHASVKDLSFSPDGKFLVSLG-NRGPGRVWDLA  239 (406)
Q Consensus       166 ~~~~v~~~~~s~~g~~l~~~~-~dg~i~vwd~~~~~----~~~~~~~~~~~i~~~~~s~~~~~l~s~s-~d~~i~iwd~~  239 (406)
                      ....+..++|.+..+.++... .++.|.-.+++...    ....+......+.++++.+.+..|..+. ..+.|.+.++.
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~  107 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  107 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecC
Confidence            345677899998777666553 45667766664321    1111222223567888887666666654 56789999997


Q ss_pred             CCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEe
Q 015490          240 SSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGT  319 (406)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~  319 (406)
                      .......+.. .......++++|....   +|++- .+..+.|.-.++............-.....+++++.++.|+.+.
T Consensus       108 g~~~~~~~~~-~~~~P~~l~vd~~~g~---ly~~~-~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d  182 (266)
T d1ijqa1         108 GVKRKTLFRE-NGSKPRAIVVDPVHGF---MYWTD-WGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVD  182 (266)
T ss_dssp             SSSEEEEEEC-TTCCEEEEEEETTTTE---EEEEE-CSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred             CceEEEEEcC-CCCCcceEEEEcccCe---EEEec-cCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEec
Confidence            6554443332 2334678999997763   44443 34456787777765443333322335578999999888777764


Q ss_pred             C-CCcEEEEECCCceEEEEeec-ccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCC
Q 015490          320 A-SGDISIIDSSSLQVRTAVKK-AHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKS  378 (406)
Q Consensus       320 ~-dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~  378 (406)
                      . .+.|...++........... .......++++. ++..+.+-..++.|...+..+++..
T Consensus       183 ~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~~  242 (266)
T d1ijqa1         183 SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV  242 (266)
T ss_dssp             TTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred             CCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCCcce
Confidence            4 67899999875443333221 122345677776 3344444456778888777776543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.65  E-value=0.0093  Score=54.61  Aligned_cols=189  Identities=12%  Similarity=0.032  Sum_probs=113.3

Q ss_pred             CCeEEEEeCCCcceEeeeeccC-------------------------------------Cce-eEEEEccCCCEEEEEeC
Q 015490          188 NGNLRVFKWPSLEIILNESEAH-------------------------------------ASV-KDLSFSPDGKFLVSLGN  229 (406)
Q Consensus       188 dg~i~vwd~~~~~~~~~~~~~~-------------------------------------~~i-~~~~~s~~~~~l~s~s~  229 (406)
                      +|.|+-+|+.+|+.+.......                                     ..+ ...++.++...+..+..
T Consensus       175 ~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg  254 (571)
T d2ad6a1         175 RGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSG  254 (571)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred             cCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecc
Confidence            6889999999999876543211                                     011 23455666666655543


Q ss_pred             ----------------CCCEEEEEcCCCeeeeecccCCcc--------eEEEEEEEcCCCCceEEEEEEEcCCCcEEEEE
Q 015490          230 ----------------RGPGRVWDLASSAVATPLAKENDE--------LFASCRFSPLNNEDYVLYIAAITDRGASIVTW  285 (406)
Q Consensus       230 ----------------d~~i~iwd~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~  285 (406)
                                      ...+.-.|.++|+..-.++..+..        .........+++.   ...++....+|.++++
T Consensus       255 ~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~---~~~v~~~~k~G~l~vl  331 (571)
T d2ad6a1         255 NPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKM---TPLLSHIDRNGILYTL  331 (571)
T ss_dssp             CCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEE---EEEEEEECTTSEEEEE
T ss_pred             cccCccccccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCcc---ccceeeccccceEEEE
Confidence                            235777889999877655432211        1112223334432   2345566789999999


Q ss_pred             eCCCceEEEEeeecC---------------------------------------CCeEEEEEcCCCCEEEEEeCC-----
Q 015490          286 NTTTWKRIRTKQVVR---------------------------------------EPVSSFNVSADGKLLAVGTAS-----  321 (406)
Q Consensus       286 d~~~~~~~~~~~~~~---------------------------------------~~i~~~~~sp~~~~l~~~~~d-----  321 (406)
                      |..+++.+.......                                       ..-...+++|+...+++...+     
T Consensus       332 Dr~tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~  411 (571)
T d2ad6a1         332 NRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDW  411 (571)
T ss_dssp             ETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEE
T ss_pred             ecCCCcEeeeeccCCcccccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEecccccccc
Confidence            999998764322110                                       000125677776666654322     


Q ss_pred             --------------------------------CcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEE
Q 015490          322 --------------------------------GDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRV  369 (406)
Q Consensus       322 --------------------------------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~i  369 (406)
                                                      |.|.-+|+.+++.+-+...  ..+..+-..+-.+.++++++.||.++-
T Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~--~~~~~~g~l~TagglVf~G~~dg~l~A  489 (571)
T d2ad6a1         412 EPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE--KFAAWGGTLYTKGGLVWYATLDGYLKA  489 (571)
T ss_dssp             EECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEE--SSCCCSBCEEETTTEEEEECTTSEEEE
T ss_pred             ccccccccCCccccccceeeccccCCcccCCcccEEEeccCCCceeeEcCC--CCCCCcceeEecCCEEEEECCCCeEEE
Confidence                                            4577788888888766642  222221112224567888999999999


Q ss_pred             EEecCCcCCCCc
Q 015490          370 TVIEDKKKSGGL  381 (406)
Q Consensus       370 w~~~~~~~~~~~  381 (406)
                      +|.++++.+=++
T Consensus       490 ~Da~tGe~lW~~  501 (571)
T d2ad6a1         490 LDNKDGKELWNF  501 (571)
T ss_dssp             EETTTCCEEEEE
T ss_pred             EECCCCcEEEEE
Confidence            999999986443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.50  E-value=0.033  Score=50.66  Aligned_cols=189  Identities=7%  Similarity=0.005  Sum_probs=114.7

Q ss_pred             CCeEEEEeCCCcceEeeeeccC------------------------------Cc-eeEEEEccCCCEEEEEeC-------
Q 015490          188 NGNLRVFKWPSLEIILNESEAH------------------------------AS-VKDLSFSPDGKFLVSLGN-------  229 (406)
Q Consensus       188 dg~i~vwd~~~~~~~~~~~~~~------------------------------~~-i~~~~~s~~~~~l~s~s~-------  229 (406)
                      .|.|.-+|.++|+.+-.+....                              .. -..+++.++..+++.+..       
T Consensus       177 ~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~  256 (560)
T d1kv9a2         177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR  256 (560)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             cceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCccccc
Confidence            4789999999999876653211                              01 122556666666554321       


Q ss_pred             ------------CCCEEEEEcCCCeeeeecccCCcc--------eEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCC
Q 015490          230 ------------RGPGRVWDLASSAVATPLAKENDE--------LFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTT  289 (406)
Q Consensus       230 ------------d~~i~iwd~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~  289 (406)
                                  ...|.-.|+++++..-.++..+..        ....+....+++.   .-+++....+|.++++|..+
T Consensus       257 ~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~---~~~v~~~~k~G~~~~lDr~t  333 (560)
T d1kv9a2         257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP---RKVLMQAPKNGFFYVLDRTN  333 (560)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE---EEEEEECCTTSEEEEEETTT
T ss_pred             ccccccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCce---eeeeeecCccceEEEEecCC
Confidence                        234667788888876544332111        1112223334432   22455678899999999999


Q ss_pred             ceEEEEeeecCC------------------------------------CeEEEEEcCCCCEEEEEeC-------------
Q 015490          290 WKRIRTKQVVRE------------------------------------PVSSFNVSADGKLLAVGTA-------------  320 (406)
Q Consensus       290 ~~~~~~~~~~~~------------------------------------~i~~~~~sp~~~~l~~~~~-------------  320 (406)
                      ++.+........                                    .-...+++|+...+++...             
T Consensus       334 G~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~  413 (560)
T d1kv9a2         334 GKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDF  413 (560)
T ss_dssp             CCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGC
T ss_pred             CcccccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeecccccc
Confidence            988755432110                                    0123456777766665432             


Q ss_pred             -----------------------CCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490          321 -----------------------SGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       321 -----------------------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                                             .|.+.-+|+.+++.+-+..  ...+..+-..+-.+.++++|+.||.++-+|.++|+.
T Consensus       414 ~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~--~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~  491 (560)
T d1kv9a2         414 VTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVP--YPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA  491 (560)
T ss_dssp             CCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEE--ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ccccccccccCcccccCCCCcccccceEEEeCCCCeEeeecc--CCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcE
Confidence                                   2467889999999887765  223332222333466888899999999999999998


Q ss_pred             CCCc
Q 015490          378 SGGL  381 (406)
Q Consensus       378 ~~~~  381 (406)
                      +=++
T Consensus       492 LW~~  495 (560)
T d1kv9a2         492 LWQF  495 (560)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            6443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.45  E-value=0.013  Score=53.56  Aligned_cols=58  Identities=10%  Similarity=0.073  Sum_probs=40.7

Q ss_pred             CcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490          322 GDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       322 g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~  381 (406)
                      |.+.-||+.+++.+-...  +..+..+-..+-.|.+|++|+.||.++.+|.++|+++-++
T Consensus       457 G~l~AiD~~tGk~~W~~~--~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~  514 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVE--HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEA  514 (573)
T ss_dssp             EEEEEEETTTTEEEEEEE--ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ccEEEeCCCCCceEeeec--CCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEE
Confidence            357778888888887765  2222222223335778888999999999999999986444

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.32  E-value=0.059  Score=49.33  Aligned_cols=239  Identities=9%  Similarity=0.007  Sum_probs=134.0

Q ss_pred             eEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECC--CCCEEEEeeC------CCeEEEEeCCC
Q 015490          127 GIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDS--EGTIFAAGSE------NGNLRVFKWPS  198 (406)
Q Consensus       127 ~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~~~~------dg~i~vwd~~~  198 (406)
                      +++.+ ..+.+|+-+|..+++.......... .      ....++   -+|  -+..+++|..      .|.|+-+|+.+
T Consensus       123 ~v~~~-t~dg~l~Alda~tG~~~w~~~~~d~-~------~~~~~t---~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~T  191 (596)
T d1w6sa_         123 LILKT-QLDGNVAALNAETGETVWKVENSDI-K------VGSTLT---IAPYVVKDKVIIGSSGAELGVRGYLTAYDVKT  191 (596)
T ss_dssp             EEEEE-CTTSEEEEEETTTCCEEEEEECCCG-G------GTCBCC---SCCEEETTEEEECCBCGGGTCCCEEEEEETTT
T ss_pred             EEEEE-eCCCCeEeeccccCceecccccccc-c------cccccc---cCCcEECCeEEEeeccccccccCceEEEECCC
Confidence            35544 3345788888888877765432100 0      000010   011  1234555432      58999999999


Q ss_pred             cceEeeeeccC-------------------------------------C-ceeEEEEccCCCEEEEEeCC----------
Q 015490          199 LEIILNESEAH-------------------------------------A-SVKDLSFSPDGKFLVSLGNR----------  230 (406)
Q Consensus       199 ~~~~~~~~~~~-------------------------------------~-~i~~~~~s~~~~~l~s~s~d----------  230 (406)
                      |+.+-++....                                     . .-..+++.+...++..+..+          
T Consensus       192 G~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~  271 (596)
T d1w6sa_         192 GEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRP  271 (596)
T ss_dssp             CCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSC
T ss_pred             CcEEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccc
Confidence            99886543211                                     0 11234556666666555322          


Q ss_pred             ------CCEEEEEcCCCeeeeecccCCcc--------eEEEEEE-EcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEE
Q 015490          231 ------GPGRVWDLASSAVATPLAKENDE--------LFASCRF-SPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRT  295 (406)
Q Consensus       231 ------~~i~iwd~~~~~~~~~~~~~~~~--------~~~~~~~-~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~  295 (406)
                            ..+.-.|+++|+..-.++..+..        ....+.. ..+++.   .-+++....+|.++++|..+++.+..
T Consensus       272 g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~---~~~v~~~~k~G~~~vlDr~tG~~i~~  348 (596)
T d1w6sa_         272 GDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKA---RKLLTHPDRNGIVYTLDRTDGALVSA  348 (596)
T ss_dssp             SCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCE---EEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ccccccccccccccccccccccccceeccccCCccccceeeeecccccccc---ccceeccccccceeeecCCCCceeee
Confidence                  34777899999877655432211        1111111 123332   12445568899999999999987754


Q ss_pred             eeecC--C-------------------------------------CeEEEEEcCCCCEEEEEeC----------------
Q 015490          296 KQVVR--E-------------------------------------PVSSFNVSADGKLLAVGTA----------------  320 (406)
Q Consensus       296 ~~~~~--~-------------------------------------~i~~~~~sp~~~~l~~~~~----------------  320 (406)
                      .....  .                                     .-..++++|+..+++....                
T Consensus       349 ~~~~~~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g  428 (596)
T d1w6sa_         349 NKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAG  428 (596)
T ss_dssp             EESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTT
T ss_pred             ccccccccccccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEeccccccccccccccccccc
Confidence            32110  0                                     0012355666555544321                


Q ss_pred             -----------------------CCcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcC
Q 015490          321 -----------------------SGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKK  377 (406)
Q Consensus       321 -----------------------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~  377 (406)
                                             .|.|.-||+.+++.+-...  +..+..+-..+-.|.+++.|+.||.++-+|.++|+.
T Consensus       429 ~~~~g~~~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~--~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~  506 (596)
T d1w6sa_         429 QFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKM--ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDL  506 (596)
T ss_dssp             SCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEE--ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ccccccccccccCcccCcccCCCcceEEEEeCCCCceecccC--CCCCCccceeEecCCEEEEECCCCeEEEEECCCCcE
Confidence                                   1467788888888776653  333333222333567888899999999999999998


Q ss_pred             CCCc
Q 015490          378 SGGL  381 (406)
Q Consensus       378 ~~~~  381 (406)
                      +=++
T Consensus       507 LW~~  510 (596)
T d1w6sa_         507 LWKF  510 (596)
T ss_dssp             EEEE
T ss_pred             eeEE
Confidence            6444

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.32  E-value=0.011  Score=54.25  Aligned_cols=189  Identities=13%  Similarity=0.157  Sum_probs=105.7

Q ss_pred             CEEEEeeCCCeEEEEeCCCcceEeeeeccCC-----------------------------------ceeEEEEccCCCEE
Q 015490          180 TIFAAGSENGNLRVFKWPSLEIILNESEAHA-----------------------------------SVKDLSFSPDGKFL  224 (406)
Q Consensus       180 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-----------------------------------~i~~~~~s~~~~~l  224 (406)
                      ..++.++.+|.+.++|..+++.+........                                   .-..++++|+...+
T Consensus       328 ~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~  407 (573)
T d1kb0a2         328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV  407 (573)
T ss_dssp             EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred             eeeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecccCCccccccccCCCcceE
Confidence            4677888999999999999987654321110                                   11134667776766


Q ss_pred             EEEeCCCCEEEEEcCCCeeeeecccC--CcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCC
Q 015490          225 VSLGNRGPGRVWDLASSAVATPLAKE--NDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREP  302 (406)
Q Consensus       225 ~s~s~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~  302 (406)
                      +....+....++.....+........  .........+. .+.       ......-|.|.-||+.+++.+-+..... +
T Consensus       408 yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~-------p~~~~~~G~l~AiD~~tGk~~W~~~~~~-p  478 (573)
T d1kb0a2         408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFF-NAE-------PPKSKPFGRLLAWDPVAQKAAWSVEHVS-P  478 (573)
T ss_dssp             EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEE-CSS-------CCCSCCEEEEEEEETTTTEEEEEEEESS-S
T ss_pred             EeeccccceeeecccccccccCCCCcccccccccccccc-ccC-------CCCCCCcccEEEeCCCCCceEeeecCCC-C
Confidence            66666555555544332221111100  00000000010 000       0111223688999999999887776543 1


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCC-eEEEEEC----------------CC
Q 015490          303 VSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSR-ALVSASM----------------DS  365 (406)
Q Consensus       303 i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~s~----------------dg  365 (406)
                      ...=..+-.|.++++|+.||.++.+|.++++.+-++.......-.-+.|.-+|+ |++..+.                .+
T Consensus       479 ~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v~~G~gg~~~~~~~~~~~~~~~  558 (573)
T d1kb0a2         479 WNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPG  558 (573)
T ss_dssp             CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCC
T ss_pred             CCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEeCCCcccccccccccCCCCC
Confidence            111122335778889999999999999999999887632211111255556786 4433222                23


Q ss_pred             cEEEEEecCCcC
Q 015490          366 SVRVTVIEDKKK  377 (406)
Q Consensus       366 ~i~iw~~~~~~~  377 (406)
                      .|.+|.|....+
T Consensus       559 ~~~~F~l~g~~~  570 (573)
T d1kb0a2         559 TVYTFVVGGKAR  570 (573)
T ss_dssp             EEEEEEETCBCC
T ss_pred             EEEEEEeCCcCC
Confidence            578888765544

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.09  E-value=0.043  Score=49.94  Aligned_cols=185  Identities=15%  Similarity=0.141  Sum_probs=110.3

Q ss_pred             CeEEEEeCCCcceEeeeeccCCceeE---------EEEccCCC---EEEEEeCCCCEEEEEcCCCeeeeecccCCcc---
Q 015490          189 GNLRVFKWPSLEIILNESEAHASVKD---------LSFSPDGK---FLVSLGNRGPGRVWDLASSAVATPLAKENDE---  253 (406)
Q Consensus       189 g~i~vwd~~~~~~~~~~~~~~~~i~~---------~~~s~~~~---~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~---  253 (406)
                      ..|.-.|+++++....+...+..+..         +....+++   .++.++.+|.+.++|..+++.+.........   
T Consensus       270 ~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~  349 (560)
T d1kv9a2         270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAE  349 (560)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEE
T ss_pred             eeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccccccccccccccc
Confidence            45777788999887665443322221         22222343   5667788999999999998876433211100   


Q ss_pred             --------------------------------eEEEEEEEcCCCCceEEEEEEEc-------------------------
Q 015490          254 --------------------------------LFASCRFSPLNNEDYVLYIAAIT-------------------------  276 (406)
Q Consensus       254 --------------------------------~~~~~~~~~~~~~~~~l~~~~~~-------------------------  276 (406)
                                                      .....+++|+...   +++-...                         
T Consensus       350 ~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~---~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (560)
T d1kv9a2         350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGL---VYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFA  426 (560)
T ss_dssp             EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTE---EEEEEEECCEEECCCGGGCCCCSSCCCSSCGG
T ss_pred             ccChhhccccccccccccccceeeeeccccccccccccccCCCCe---eecccccccceeeccccccccccccccccCcc
Confidence                                            0113455665542   3222110                         


Q ss_pred             --------CCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEE
Q 015490          277 --------DRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTA  348 (406)
Q Consensus       277 --------~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~  348 (406)
                              ...+.|.-+|+.+++.+-+..... +..+-.++-.+.+++.|+.||.++.+|..+++.+-++.......-.-
T Consensus       427 ~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~-~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P  505 (560)
T d1kv9a2         427 DATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAP  505 (560)
T ss_dssp             GCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred             cccCCCCcccccceEEEeCCCCeEeeeccCCC-CCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccC
Confidence                    113678899999999887766442 22222223346788899999999999999999998876332222223


Q ss_pred             EEEcCCCC-eEEEEECC--------------------CcEEEEEecCCcC
Q 015490          349 LAFSYDSR-ALVSASMD--------------------SSVRVTVIEDKKK  377 (406)
Q Consensus       349 ~~~sp~~~-~l~s~s~d--------------------g~i~iw~~~~~~~  377 (406)
                      +.+.-+|+ ||+..+..                    +.|.+|.|....+
T Consensus       506 ~ty~~dGkqyv~v~aG~g~~~~~~~~~~~~~~~~~~g~~l~~F~L~g~~~  555 (560)
T d1kv9a2         506 MTFELAGRQYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLVFALDGKAQ  555 (560)
T ss_dssp             EEEEETTEEEEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEEEEETCCCC
T ss_pred             EEEEECCEEEEEEEeCCCcccccccccccccccCCCCCEEEEEEeCCCCC
Confidence            55666785 45443322                    3588888875544

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.02  E-value=0.12  Score=47.13  Aligned_cols=58  Identities=14%  Similarity=0.031  Sum_probs=41.8

Q ss_pred             CcEEEEECCCceEEEEeecccccceEEEEEcCCCCeEEEEECCCcEEEEEecCCcCCCCc
Q 015490          322 GDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSASMDSSVRVTVIEDKKKSGGL  381 (406)
Q Consensus       322 g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~s~dg~i~iw~~~~~~~~~~~  381 (406)
                      |.|.-+|+.+++.+-+...  ..++.+-..+..|.++++|+.||.++-+|.++|+.+=++
T Consensus       466 G~l~AiD~~TG~i~W~~~~--~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~  523 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKE--HLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKF  523 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEE--SSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CeEEEEcCCCCcEEeecCC--CCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEE
Confidence            5688888888888877652  223332223445778888999999999999999986433

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.99  E-value=0.048  Score=45.94  Aligned_cols=196  Identities=10%  Similarity=0.137  Sum_probs=111.2

Q ss_pred             CCCEEEEeeCCCeEEEEeCCCcceEeeeeccCCceeEEEEc------cCCCEEEEEeC--C--CCEEEEEcCC-Ceeeee
Q 015490          178 EGTIFAAGSENGNLRVFKWPSLEIILNESEAHASVKDLSFS------PDGKFLVSLGN--R--GPGRVWDLAS-SAVATP  246 (406)
Q Consensus       178 ~g~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s------~~~~~l~s~s~--d--~~i~iwd~~~-~~~~~~  246 (406)
                      +..+++....++-|++||++ |+.+..+..  +.++.+..-      .....+++++.  +  .+|.+|.+.. ...+..
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~--Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~  115 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLE-GKMLHSYHT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETT-CCEEEECCS--SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred             CccEEEEEcCcCCEEEEcCC-CcEEEeccc--CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence            34566666677779999985 777665532  345554432      22223555552  2  3577887742 222332


Q ss_pred             cccCC------cceEEEEEE--EcCCCCceEEEEEEEcCCCcEEEEEeCC---Cc----eEEEEeeecCCCeEEEEEcCC
Q 015490          247 LAKEN------DELFASCRF--SPLNNEDYVLYIAAITDRGASIVTWNTT---TW----KRIRTKQVVREPVSSFNVSAD  311 (406)
Q Consensus       247 ~~~~~------~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~i~~~d~~---~~----~~~~~~~~~~~~i~~~~~sp~  311 (406)
                      +....      ...+..+++  ++....   + .+.....+|.+..|.+.   .+    +.++.+... ..+..+.+++.
T Consensus       116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~---~-~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~-~q~EGCVvDde  190 (353)
T d1h6la_         116 ITDPNRPIASAIDEVYGFSLYHSQKTGK---Y-YAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN-SQTEGMAADDE  190 (353)
T ss_dssp             CSCSSSCEECSSSSCCCEEEEECTTTCC---E-EEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS-SCEEEEEEETT
T ss_pred             ccccccccccccCcceEEEEEecCCCCe---E-EEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC-CccceEEEeCC
Confidence            22111      112345555  555443   2 33344667888877652   22    345556543 57899999999


Q ss_pred             CCEEEEEeCCCcEEEEECCC-----ceEEEEeec-ccccceEEEEEcC--CCC-eEE-EEECCCcEEEEEecCC-cCCCC
Q 015490          312 GKLLAVGTASGDISIIDSSS-----LQVRTAVKK-AHLGIVTALAFSY--DSR-ALV-SASMDSSVRVTVIEDK-KKSGG  380 (406)
Q Consensus       312 ~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~-~~~~~v~~~~~sp--~~~-~l~-s~s~dg~i~iw~~~~~-~~~~~  380 (406)
                      .+.|+.+-++.-|+.+++..     ...+..... ...+.+-.++.-.  ++. +|+ |.-.+++..|||..++ +.++.
T Consensus       191 ~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~  270 (353)
T d1h6la_         191 YGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVAD  270 (353)
T ss_dssp             TTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred             CCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccce
Confidence            99999998887777777642     222222211 2345667776543  332 544 4446788999998774 44444


Q ss_pred             c
Q 015490          381 L  381 (406)
Q Consensus       381 ~  381 (406)
                      |
T Consensus       271 F  271 (353)
T d1h6la_         271 F  271 (353)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.98  E-value=0.048  Score=49.68  Aligned_cols=83  Identities=19%  Similarity=0.157  Sum_probs=55.9

Q ss_pred             CCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCC-
Q 015490          278 RGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSR-  356 (406)
Q Consensus       278 ~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-  356 (406)
                      ..|.|.-+|+.+++.+-+.......... ..+-.+.++++|+.||.++.+|.++++.+-++..+....-.-+.|..||+ 
T Consensus       442 ~~G~l~AiD~~TG~~~W~~~~~~~~~~g-~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkq  520 (571)
T d2ad6a1         442 EMGQIRAFDLTTGKAKWTKWEKFAAWGG-TLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQ  520 (571)
T ss_dssp             CCEEEEEECTTTCCEEEEEEESSCCCSB-CEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CcccEEEeccCCCceeeEcCCCCCCCcc-eeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEE
Confidence            3578999999999988776543221111 12224668888999999999999999999888633333233356666776 


Q ss_pred             eEEEE
Q 015490          357 ALVSA  361 (406)
Q Consensus       357 ~l~s~  361 (406)
                      |+++.
T Consensus       521 Yi~v~  525 (571)
T d2ad6a1         521 YIGSM  525 (571)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            44443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.85  E-value=0.12  Score=47.06  Aligned_cols=83  Identities=16%  Similarity=0.138  Sum_probs=58.1

Q ss_pred             CCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCC
Q 015490          277 DRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSR  356 (406)
Q Consensus       277 ~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~  356 (406)
                      ...|.|.-+|+.+++.+-+...+. ++.+-..+..|.++++|+.||.++.+|.++|+.+-++.......-.-+.+..+|+
T Consensus       463 ~~~G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~  541 (582)
T d1flga_         463 DHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE  541 (582)
T ss_dssp             SCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             CCCCeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence            345789999999999888776553 2222223346778889999999999999999999888633322222366777885


Q ss_pred             -eEEE
Q 015490          357 -ALVS  360 (406)
Q Consensus       357 -~l~s  360 (406)
                       |++.
T Consensus       542 qYv~i  546 (582)
T d1flga_         542 QYLGV  546 (582)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence             4443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.75  E-value=0.15  Score=44.37  Aligned_cols=245  Identities=9%  Similarity=0.023  Sum_probs=128.0

Q ss_pred             CceEEEEccCCCeEEEEe----cCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCCCCEEEEeeCC--
Q 015490          115 LPYRMAIHPHGDGIICAL----QNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSEGTIFAAGSEN--  188 (406)
Q Consensus       115 ~v~~~~~sp~~~~l~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d--  188 (406)
                      .+...+++|++++++.+-    +....|+..|..+++.+..           .+. ......++|++|++.|+....+  
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~-----------~i~-~~~~~~~~W~~D~~~~~Y~~~~~~  193 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-----------VLE-RVKFSCMAWTHDGKGMFYNAYPQQ  193 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-----------EEE-EECSCCEEECTTSSEEEEEECCCC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc-----------ccc-cccccceEEcCCCCEEEEEEeccc
Confidence            345678899999998763    3346777777776553321           010 1112457899999887754322  


Q ss_pred             --------------CeEEEEeCCCcce--EeeeeccCC--ceeEEEEccCCCEEEEEeC---CCC--EEEEEcCCCeee-
Q 015490          189 --------------GNLRVFKWPSLEI--ILNESEAHA--SVKDLSFSPDGKFLVSLGN---RGP--GRVWDLASSAVA-  244 (406)
Q Consensus       189 --------------g~i~vwd~~~~~~--~~~~~~~~~--~i~~~~~s~~~~~l~s~s~---d~~--i~iwd~~~~~~~-  244 (406)
                                    ..|..+.+.+...  ...+.....  .+..+..+.++++++....   +..  +.+.|+...... 
T Consensus       194 ~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~  273 (430)
T d1qfma1         194 DGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI  273 (430)
T ss_dssp             SSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred             cCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCccccc
Confidence                          2577887766532  222222222  4566778999998764432   333  344454332110 


Q ss_pred             ------eecccCCcceEEEEEEEcCCCCceEEEEEEE-cCCCcEEEEEeCCCceE--EEEee-ecCCCeEEEEEcCCCCE
Q 015490          245 ------TPLAKENDELFASCRFSPLNNEDYVLYIAAI-TDRGASIVTWNTTTWKR--IRTKQ-VVREPVSSFNVSADGKL  314 (406)
Q Consensus       245 ------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~d~~~~~~--~~~~~-~~~~~i~~~~~sp~~~~  314 (406)
                            ..+......... .. ...+..   +++... ...++.|...++.....  ...+. .+...+..-.++..+.+
T Consensus       274 ~~~~~~~~~~~~~~~~~~-~~-~~~~~~---~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~  348 (430)
T d1qfma1         274 TGILKWVKLIDNFEGEYD-YV-TNEGTV---FTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNF  348 (430)
T ss_dssp             CSSCCCEEEECSSSSCEE-EE-EEETTE---EEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTE
T ss_pred             ccccceeEeecccccceE-EE-ecCCce---eecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCE
Confidence                  011111111111 11 112221   222221 22356777777765322  12232 23344544444444556


Q ss_pred             EEEEe-CCC--cEEEEECCCceEEEEeecccccceEEEEEcCCCCeEE-EEE---CCCcEEEEEecCCcC
Q 015490          315 LAVGT-ASG--DISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSRALV-SAS---MDSSVRVTVIEDKKK  377 (406)
Q Consensus       315 l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-s~s---~dg~i~iw~~~~~~~  377 (406)
                      |+... .++  .|+++++.++....... ...+.+..+...++...+. +.+   .-.++.-+|+.+++.
T Consensus       349 lvl~~~~~~~~~l~v~~~~~~~~~~~~~-~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         349 LVLCYLHDVKNTLQLHDLATGALLKIFP-LEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEC-CCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred             EEEEEEcCCEeEEEEEECCCCcEEEecC-CCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence            66554 444  58899998877665543 3445566665555554433 322   226788899988753

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.59  E-value=0.054  Score=46.32  Aligned_cols=160  Identities=11%  Similarity=0.024  Sum_probs=92.1

Q ss_pred             EEEEECCCCCEEEEeeCC-----C------eEEEEeCCCcceEee--ee-ccCCceeEEEEccCCCEEEEEeCC-CCEEE
Q 015490          171 LALTFDSEGTIFAAGSEN-----G------NLRVFKWPSLEIILN--ES-EAHASVKDLSFSPDGKFLVSLGNR-GPGRV  235 (406)
Q Consensus       171 ~~~~~s~~g~~l~~~~~d-----g------~i~vwd~~~~~~~~~--~~-~~~~~i~~~~~s~~~~~l~s~s~d-~~i~i  235 (406)
                      .......+|+.++.|+.+     +      .+.+||..+++....  .. .+.......++.+++++++.++.+ ..+.+
T Consensus        23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~  102 (387)
T d1k3ia3          23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  102 (387)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeE
Confidence            444556688888888742     1      377999987754321  11 122234567788999988888654 58999


Q ss_pred             EEcCCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCC-----CcEEEEEeCCCceEEEEeeec-----------
Q 015490          236 WDLASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDR-----GASIVTWNTTTWKRIRTKQVV-----------  299 (406)
Q Consensus       236 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~i~~~d~~~~~~~~~~~~~-----------  299 (406)
                      ||..+..-...-...........+..++++.     ++..+..     ...+.+||..+.+-...-...           
T Consensus       103 yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v-----~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~  177 (387)
T d1k3ia3         103 YDSSSDSWIPGPDMQVARGYQSSATMSDGRV-----FTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQG  177 (387)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCE-----EEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTG
T ss_pred             ecCccCcccccccccccccccceeeecCCce-----eeeccccccccccceeeeecCCCCceeecCCCcccccccccccc
Confidence            9998876544222222222335666777762     2222211     246889998876532211000           


Q ss_pred             ---CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEE
Q 015490          300 ---REPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVR  335 (406)
Q Consensus       300 ---~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~  335 (406)
                         ...-..+...++|+.+..+..++.+.+++..+....
T Consensus       178 ~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~  216 (387)
T d1k3ia3         178 LYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK  216 (387)
T ss_dssp             GGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE
T ss_pred             eeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEe
Confidence               000111223456777777777777888887766543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.01  E-value=0.34  Score=40.49  Aligned_cols=160  Identities=14%  Similarity=0.089  Sum_probs=85.6

Q ss_pred             eEEEEccCCCEEEEEeC------------CCCEEEEEcCCCeeee-ec--ccCC----cceEEEEEEE--cCCCCceEEE
Q 015490          213 KDLSFSPDGKFLVSLGN------------RGPGRVWDLASSAVAT-PL--AKEN----DELFASCRFS--PLNNEDYVLY  271 (406)
Q Consensus       213 ~~~~~s~~~~~l~s~s~------------d~~i~iwd~~~~~~~~-~~--~~~~----~~~~~~~~~~--~~~~~~~~l~  271 (406)
                      -+++..|+|..+++++.            .|.|.++|+.+.+... .+  ....    .-....+...  +++..  .++
T Consensus        38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~--~L~  115 (340)
T d1v04a_          38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTV--YLL  115 (340)
T ss_dssp             CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCE--EEE
T ss_pred             ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcE--EEE
Confidence            45666677665555432            4788999987653321 11  1100    0112344443  33432  232


Q ss_pred             EEEEcCCCcEEEEEeCCCc--eE--EEEeeec-CCCeEEEEEcCCCCEEEEEeC---------------CCcEEEEECCC
Q 015490          272 IAAITDRGASIVTWNTTTW--KR--IRTKQVV-REPVSSFNVSADGKLLAVGTA---------------SGDISIIDSSS  331 (406)
Q Consensus       272 ~~~~~~~~~~i~~~d~~~~--~~--~~~~~~~-~~~i~~~~~sp~~~~l~~~~~---------------dg~i~i~d~~~  331 (406)
                      ++--.....+|-++++...  +.  +.++... ......+.+..++.++++-..               -+...+|..+.
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~  195 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  195 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred             EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence            2221135667888776432  22  2222221 245688888889988887321               02233444333


Q ss_pred             ceEEEEeecccccceEEEEEcCCCCeEEEE-ECCCcEEEEEecCCc
Q 015490          332 LQVRTAVKKAHLGIVTALAFSYDSRALVSA-SMDSSVRVTVIEDKK  376 (406)
Q Consensus       332 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~-s~dg~i~iw~~~~~~  376 (406)
                      ++......  .-...+.++++||+++|+.+ +..++|++|++...+
T Consensus       196 ~~~~~~~~--~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~  239 (340)
T d1v04a_         196 NDVRVVAE--GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW  239 (340)
T ss_dssp             SCEEEEEE--EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             CceEEEcC--CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence            33322222  33457899999999877544 567889999997554

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.86  E-value=0.48  Score=41.30  Aligned_cols=111  Identities=13%  Similarity=0.115  Sum_probs=64.1

Q ss_pred             CCceeEEEEccCCCEEEEEeCCCCEEEEEcCCCeeee--ecc-----cCCcceEEEEEEEcCCCCceEEEEEEEcCC---
Q 015490          209 HASVKDLSFSPDGKFLVSLGNRGPGRVWDLASSAVAT--PLA-----KENDELFASCRFSPLNNEDYVLYIAAITDR---  278 (406)
Q Consensus       209 ~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---  278 (406)
                      -...++|+|.||++++++--..|.|++++..+++...  .+.     .........++|+|+-..+..+|+..+...   
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~  105 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCC
Confidence            3467899999999977766557899999887765432  221     122334678999998655555665443111   


Q ss_pred             -----Cc--EEEEEeCCC--ceE-----E-EEee-ecCCCeEEEEEcCCCCEEEEEe
Q 015490          279 -----GA--SIVTWNTTT--WKR-----I-RTKQ-VVREPVSSFNVSADGKLLAVGT  319 (406)
Q Consensus       279 -----~~--~i~~~d~~~--~~~-----~-~~~~-~~~~~i~~~~~sp~~~~l~~~~  319 (406)
                           ..  .+..+....  ...     + .... ...+....|.|.|||.+.++.+
T Consensus       106 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~G  162 (450)
T d1crua_         106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (450)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             cccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEec
Confidence                 11  122222221  111     1 1111 1124567999999998766654

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.81  E-value=0.5  Score=40.87  Aligned_cols=249  Identities=8%  Similarity=-0.014  Sum_probs=124.2

Q ss_pred             cCCCCCcEEEEEcCCCCCCCCcCccEEEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEe-cC--------
Q 015490           64 DDIRRNYYVVLAGGGGAGNSGIRNAVLLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICAL-QN--------  134 (406)
Q Consensus        64 ~~~~~~~~~~~~~ggg~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~~--------  134 (406)
                      ..++++++++++-..+     -.....+..+|.+++.+....+..     .....++|++|++.|+... +.        
T Consensus       131 ~~Spd~~~la~s~d~~-----G~e~~~l~v~Dl~tg~~~~~~i~~-----~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~  200 (430)
T d1qfma1         131 AFSEDGEYFAYGLSAS-----GSDWVTIKFMKVDGAKELPDVLER-----VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (430)
T ss_dssp             EECTTSSEEEEEEEET-----TCSCEEEEEEETTTTEEEEEEEEE-----ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             EecCCCCEEEEEeccc-----cCchheeEEeccCcceeccccccc-----ccccceEEcCCCCEEEEEEeccccCccccc
Confidence            3456777777653211     122457788888776543322211     1125789999999887653 21        


Q ss_pred             ------CeEEEEEecccccceeecceeccceeeeccc-ccCcEEEEEECCCCCEEEEeeC---CCe--EEEEeCCCcce-
Q 015490          135 ------SCRLFEWDEVENTEIRRLGVKISEKVLSQLE-NVGQQLALTFDSEGTIFAAGSE---NGN--LRVFKWPSLEI-  201 (406)
Q Consensus       135 ------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~---dg~--i~vwd~~~~~~-  201 (406)
                            .-++|.+...+....        ...+.... ....+..+..+.++++++....   +..  +.+.++..... 
T Consensus       201 ~~~~~~~~~v~~h~lgt~~~~--------d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~  272 (430)
T d1qfma1         201 ETSTNLHQKLYYHVLGTDQSE--------DILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNG  272 (430)
T ss_dssp             CCCCCCCCEEEEEETTSCGGG--------CEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred             ccccCCcceEEEEECCCCccc--------cccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccc
Confidence                  125666554433211        11121111 2234667888999998765422   333  44445432211 


Q ss_pred             -------EeeeeccCCceeEEEEccCCCEEEEEeC---CCCEEEEEcCCCeee--eecccCCcceEEEEEEEcCCCCceE
Q 015490          202 -------ILNESEAHASVKDLSFSPDGKFLVSLGN---RGPGRVWDLASSAVA--TPLAKENDELFASCRFSPLNNEDYV  269 (406)
Q Consensus       202 -------~~~~~~~~~~i~~~~~s~~~~~l~s~s~---d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  269 (406)
                             ............-+ -+.++.+++....   ++.|...++......  ..+..++...+..-.+...+..   
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~---  348 (430)
T d1qfma1         273 ITGILKWVKLIDNFEGEYDYV-TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNF---  348 (430)
T ss_dssp             SCSSCCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTE---
T ss_pred             cccccceeEeecccccceEEE-ecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCE---
Confidence                   11111111122222 2223333333332   355666666543321  2222222322323333443442   


Q ss_pred             EEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC----CCcEEEEECCCceE
Q 015490          270 LYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA----SGDISIIDSSSLQV  334 (406)
Q Consensus       270 l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~----dg~i~i~d~~~~~~  334 (406)
                      +++....+.-..|++++..++..........+.+..+...++...+...-.    =.++.-+|+.+++.
T Consensus       349 lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         349 LVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred             EEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence            333334455678999999888766555444456666665666654444322    26788899988754

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.77  E-value=0.67  Score=42.01  Aligned_cols=80  Identities=18%  Similarity=0.093  Sum_probs=53.6

Q ss_pred             CcEEEEEeCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCceEEEEeecccccceEEEEEcCCCC-e
Q 015490          279 GASIVTWNTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTASGDISIIDSSSLQVRTAVKKAHLGIVTALAFSYDSR-A  357 (406)
Q Consensus       279 ~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~  357 (406)
                      .|.|.-||+.+++.+-...... +..+-.++-.|.+++.|+.||.++.+|.++++.+-++.......-.-+.+.-+|+ |
T Consensus       452 ~G~l~A~D~~TG~~~W~~~~~~-~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQY  530 (596)
T d1w6sa_         452 LGQIKAYNAITGDYKWEKMERF-AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQY  530 (596)
T ss_dssp             CEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cceEEEEeCCCCceecccCCCC-CCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEE
Confidence            3789999999999876654332 2222222335778888999999999999999999887632222222345556775 4


Q ss_pred             EE
Q 015490          358 LV  359 (406)
Q Consensus       358 l~  359 (406)
                      ++
T Consensus       531 va  532 (596)
T d1w6sa_         531 VA  532 (596)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.66  E-value=0.99  Score=37.59  Aligned_cols=147  Identities=14%  Similarity=0.124  Sum_probs=85.4

Q ss_pred             ccCCCEEEEEeCCCCEEEEEcCCCeeeeecccCCcceEEEEEEE----cCCCCceEEEEEEEcCC--CcEEEEEeCCC-c
Q 015490          218 SPDGKFLVSLGNRGPGRVWDLASSAVATPLAKENDELFASCRFS----PLNNEDYVLYIAAITDR--GASIVTWNTTT-W  290 (406)
Q Consensus       218 s~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~--~~~i~~~d~~~-~  290 (406)
                      .|+..+++.....+-|++||+. |+.+..+....   +..+..-    -.+..  ..+++++...  ...|.+|.+.. .
T Consensus        37 ~p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~Gr---~NNVDvr~~~~l~~~~--~di~vasnR~~~~~~l~~~~id~~~  110 (353)
T d1h6la_          37 NPQNSKLITTNKKSGLAVYSLE-GKMLHSYHTGK---LNNVDIRYDFPLNGKK--VDIAAASNRSEGKNTIEIYAIDGKN  110 (353)
T ss_dssp             CGGGCEEEEEETTSCCEEEETT-CCEEEECCSSC---EEEEEEEEEEEETTEE--EEEEEEEECCTTTCEEEEEEEETTT
T ss_pred             CcCccEEEEEcCcCCEEEEcCC-CcEEEecccCC---cCccccccccccCCcc--eEEEEEeCCcCcceeEEEEEecCcc
Confidence            3456677777777789999994 77777665432   3333222    22322  2234444443  24677776642 2


Q ss_pred             eEEEEeeec-------CCCeEEEEE--cCC-CC-EEEEEeCCCcEEEEECC---Cc----eEEEEeecccccceEEEEEc
Q 015490          291 KRIRTKQVV-------REPVSSFNV--SAD-GK-LLAVGTASGDISIIDSS---SL----QVRTAVKKAHLGIVTALAFS  352 (406)
Q Consensus       291 ~~~~~~~~~-------~~~i~~~~~--sp~-~~-~l~~~~~dg~i~i~d~~---~~----~~~~~~~~~~~~~v~~~~~s  352 (406)
                      ..+..+...       ...+..+|+  ++. |. ++++...+|.+..|.+.   .+    +.++.+.  -...+-.|.+.
T Consensus       111 ~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~--~~~q~EGCVvD  188 (353)
T d1h6la_         111 GTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK--MNSQTEGMAAD  188 (353)
T ss_dssp             TEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE--CSSCEEEEEEE
T ss_pred             cccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC--CCCccceEEEe
Confidence            233333221       123556666  664 54 45666678988888662   23    3444453  44568899999


Q ss_pred             CCCCeEEEEECCCcEEEEEe
Q 015490          353 YDSRALVSASMDSSVRVTVI  372 (406)
Q Consensus       353 p~~~~l~s~s~dg~i~iw~~  372 (406)
                      +....|..+-.+..|..++.
T Consensus       189 de~~~LyisEE~~Giw~~~a  208 (353)
T d1h6la_         189 DEYGSLYIAEEDEAIWKFSA  208 (353)
T ss_dssp             TTTTEEEEEETTTEEEEEES
T ss_pred             CCCCcEEEecCccceEEEEe
Confidence            98888888877765544444

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.97  E-value=1.4  Score=36.56  Aligned_cols=184  Identities=10%  Similarity=0.109  Sum_probs=100.9

Q ss_pred             EEEEECCCCCEEEEeeC------------CCeEEEEeCCCcceEe---eeeccC-----CceeEEEE--ccCCC-EEEEE
Q 015490          171 LALTFDSEGTIFAAGSE------------NGNLRVFKWPSLEIIL---NESEAH-----ASVKDLSF--SPDGK-FLVSL  227 (406)
Q Consensus       171 ~~~~~s~~g~~l~~~~~------------dg~i~vwd~~~~~~~~---~~~~~~-----~~i~~~~~--s~~~~-~l~s~  227 (406)
                      -.+...|+|..+++++.            .|.|.++|+.+.+...   .+.+..     -....+..  .++|+ +|++.
T Consensus        38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vv  117 (340)
T d1v04a_          38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV  117 (340)
T ss_dssp             CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred             ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEE
Confidence            35777888876665532            4899999987653221   111111     02344443  44566 45555


Q ss_pred             e---CCCCEEEEEcCCCe--e--eeecccCCcceEEEEEEEcCCCCceEEEEEEE---------------cCCCcEEEEE
Q 015490          228 G---NRGPGRVWDLASSA--V--ATPLAKENDELFASCRFSPLNNEDYVLYIAAI---------------TDRGASIVTW  285 (406)
Q Consensus       228 s---~d~~i~iwd~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------~~~~~~i~~~  285 (406)
                      .   ...+|.+|++....  .  ...+..........+.+..++.-    |++--               +...+.+..|
T Consensus       118 nH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~f----y~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~  193 (340)
T d1v04a_         118 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHF----YATNDHYFIDPYLKSWEMHLGLAWSFVTYY  193 (340)
T ss_dssp             ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEE----EEEESCSCCSHHHHHHHHHTTCCCEEEEEE
T ss_pred             eccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCE----EEecCccCcChhhhhhhHhhcCCceeEEEE
Confidence            4   34578888875432  1  22333333344677888877751    22210               1123455666


Q ss_pred             eCCCceEEEEeeecCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCceEEEEee-cccccceEEEEEcC-CCCeEEEE
Q 015490          286 NTTTWKRIRTKQVVREPVSSFNVSADGKLLAVGTA-SGDISIIDSSSLQVRTAVK-KAHLGIVTALAFSY-DSRALVSA  361 (406)
Q Consensus       286 d~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~sp-~~~~l~s~  361 (406)
                      |....+.+  ... -.....++++||+++|+++.. .+.|++|++.......... ..-.+.+-.+.+.+ +|.+.+.+
T Consensus       194 ~~~~~~~~--~~~-l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         194 SPNDVRVV--AEG-FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             CSSCEEEE--EEE-ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             cCCceEEE--cCC-CCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            65443222  222 245689999999998877655 7789999987543222111 12334566788876 44544443

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.79  E-value=2.3  Score=35.66  Aligned_cols=179  Identities=9%  Similarity=-0.040  Sum_probs=93.2

Q ss_pred             CcEEEEEECCCCCEEEEeeCCCeEEEEeCCC---------cceEeeeeccCCceeEEEEccCCCEEEEEeCCCCEEEEEc
Q 015490          168 GQQLALTFDSEGTIFAAGSENGNLRVFKWPS---------LEIILNESEAHASVKDLSFSPDGKFLVSLGNRGPGRVWDL  238 (406)
Q Consensus       168 ~~v~~~~~s~~g~~l~~~~~dg~i~vwd~~~---------~~~~~~~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~iwd~  238 (406)
                      ....-++.++...+++.|+.++ +.|.....         ..........-..|..++|+.|  .|+.. .++.+..++.
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~~  112 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLDL  112 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEES
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEEe
Confidence            3456788888877888887774 66766421         1100111111126888999755  45544 4556788877


Q ss_pred             CCCeeeeecccCCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEee-----ecCCCeEEEEEcCCCC
Q 015490          239 ASSAVATPLAKENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQ-----VVREPVSSFNVSADGK  313 (406)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~-----~~~~~i~~~~~sp~~~  313 (406)
                      .+-........ ....+..+.++|..-      .+  ...++.+.++++..++......     .-.+...+++|++.|+
T Consensus       113 ~~l~~~~~~~~-~~~~~~~~~~~p~~~------~l--~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgk  183 (381)
T d1xipa_         113 EELSEFRTVTS-FEKPVFQLKNVNNTL------VI--LNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSF  183 (381)
T ss_dssp             SSTTCEEEEEE-CSSCEEEEEECSSEE------EE--EETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCE
T ss_pred             ecccccccccc-ccccccceecCCcee------EE--EecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcE
Confidence            65333222211 123456677766431      22  2347888888888765432211     1124567777777777


Q ss_pred             EEEEEeCCCcEEE-EECCCceEEEEeecccccceEEEEEcCCCCeEEEE
Q 015490          314 LLAVGTASGDISI-IDSSSLQVRTAVKKAHLGIVTALAFSYDSRALVSA  361 (406)
Q Consensus       314 ~l~~~~~dg~i~i-~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~  361 (406)
                      .++++..+. ..+ -++.....+... ......|.++.|-.+..++++-
T Consensus       184 q~v~~~g~~-~q~k~~i~~~~~~~~p-~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         184 QSFAWRNGE-MEKQFEFSLPSELEEL-PVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EEEEEETTE-EEEEEEECCCHHHHTS-CTTTSEEEEEEESSSSEEEEEE
T ss_pred             EEEEeCCCc-eeeccCCCCccccCCC-cCCCcceeEEEEecCceEEEEE
Confidence            776663321 111 011111000000 0123467889998776666554

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.64  E-value=2.5  Score=33.44  Aligned_cols=93  Identities=11%  Similarity=0.005  Sum_probs=46.1

Q ss_pred             cEEEEEeCCCceEEEEeeecCC-CeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCceEEEEeecccccce-EEEEEc
Q 015490          280 ASIVTWNTTTWKRIRTKQVVRE-PVSSFNVSADGKLLAVGTAS-----GDISIIDSSSLQVRTAVKKAHLGIV-TALAFS  352 (406)
Q Consensus       280 ~~i~~~d~~~~~~~~~~~~~~~-~i~~~~~sp~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~v-~~~~~s  352 (406)
                      ..+..||..+.+....-..... ...+.... +++.++.|+.+     .....+|..+.+....-. ...... .+++. 
T Consensus       164 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~r~~~~~~~-  240 (288)
T d1zgka1         164 NSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP-MKHRRSALGITV-  240 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC-CSSCCBSCEEEE-
T ss_pred             ceEEEeeccccccccccccccccccccccce-eeeEEEecCccccccccceeeeeecceeeecccC-ccCcccceEEEE-
Confidence            4567788776543322111111 11122222 34555555443     346788887765443321 111111 12332 


Q ss_pred             CCCCeEEEEECCC-----cEEEEEecCC
Q 015490          353 YDSRALVSASMDS-----SVRVTVIEDK  375 (406)
Q Consensus       353 p~~~~l~s~s~dg-----~i~iw~~~~~  375 (406)
                      .++++++.|+.++     .|.+||+.+.
T Consensus       241 ~~~~l~v~GG~~~~~~~~~v~~yd~~~~  268 (288)
T d1zgka1         241 HQGRIYVLGGYDGHTFLDSVECYDPDTD  268 (288)
T ss_dssp             ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             ECCEEEEEecCCCCeecceEEEEECCCC
Confidence            3678888877554     3778888764

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=91.40  E-value=3.9  Score=35.21  Aligned_cols=62  Identities=8%  Similarity=0.175  Sum_probs=36.0

Q ss_pred             CCCceEEEEccCCCeEEEEecCCeEEEEEecccccceeecceeccceeeecccccCcEEEEEECCC
Q 015490          113 SDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENTEIRRLGVKISEKVLSQLENVGQQLALTFDSE  178 (406)
Q Consensus       113 ~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  178 (406)
                      -...++|+|.|+|+.+++-- ...+|+.++..++.......+   .........+.....++|+|+
T Consensus        26 L~~P~~la~~pdg~llVter-~~G~i~~v~~~~g~~~~i~~~---~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTER-ATGKILRVNPESGSVKTVFQV---PEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEET-TTCEEEEECTTTCCEEEEEEC---TTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEe-cCCEEEEEECCCCcEeecccC---CccccccCCCCceeeEEeCCC
Confidence            45678999999999877663 233566666544332211111   111112234567889999985

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.79  E-value=3.1  Score=32.88  Aligned_cols=52  Identities=13%  Similarity=0.217  Sum_probs=27.6

Q ss_pred             EEEEEeCCCceEEEEeeecCCCe-EEEEEcCCCCEEEEEeCCC-----cEEEEECCCce
Q 015490          281 SIVTWNTTTWKRIRTKQVVREPV-SSFNVSADGKLLAVGTASG-----DISIIDSSSLQ  333 (406)
Q Consensus       281 ~i~~~d~~~~~~~~~~~~~~~~i-~~~~~sp~~~~l~~~~~dg-----~i~i~d~~~~~  333 (406)
                      ....+|..+.+....-....... .+++. .++++++.|+.++     .+.+||+.+.+
T Consensus       212 ~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         212 SVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             ceeeeeecceeeecccCccCcccceEEEE-ECCEEEEEecCCCCeecceEEEEECCCCE
Confidence            55677777654433211111111 12222 3577777776543     37889988654

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.41  E-value=3.6  Score=33.07  Aligned_cols=215  Identities=10%  Similarity=0.090  Sum_probs=115.4

Q ss_pred             EEEEEecCCCCccccceeEEecCCCCceEEEEccCCCeEEEEecCCeEEEEEeccccc-ceeecceeccceeeecccccC
Q 015490           90 LLSHFDFASNSLSDQPVAELRTDSDLPYRMAIHPHGDGIICALQNSCRLFEWDEVENT-EIRRLGVKISEKVLSQLENVG  168 (406)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  168 (406)
                      .+..++.+.+    +.+..+.-. +.|.--.|-.+. .|+...+..  +|.|+..... ..+.++.      ...+ ...
T Consensus        84 ~LQiFnletK----~klks~~~~-e~VvfWkWis~~-~L~lVT~ta--VYHW~~~g~s~P~k~fdR------~~~L-~~~  148 (327)
T d1utca2          84 TLQIFNIEMK----SKMKAHTMT-DDVTFWKWISLN-TVALVTDNA--VYHWSMEGESQPVKMFDR------HSSL-AGC  148 (327)
T ss_dssp             EEEEEETTTT----EEEEEEECS-SCCCEEEESSSS-EEEEECSSE--EEEEESSSSCCCEEEEEC------CGGG-TTC
T ss_pred             eEEEEehhHh----hhhceEEcC-CCcEEEEecCCC-EEEEEcCCc--eEEEcccCCCCchhhhhh------cccc-cCc
Confidence            3444555442    244444433 456666776544 455555555  4555543221 1111111      0111 124


Q ss_pred             cEEEEEECCCCCEEEEee-------CCCeEEEEeCCCcceEeeeeccCCceeEEEEccC--C-CEEEEEe---CCCCEEE
Q 015490          169 QQLALTFDSEGTIFAAGS-------ENGNLRVFKWPSLEIILNESEAHASVKDLSFSPD--G-KFLVSLG---NRGPGRV  235 (406)
Q Consensus       169 ~v~~~~~s~~g~~l~~~~-------~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~--~-~~l~s~s---~d~~i~i  235 (406)
                      .|..-..+++.++++..+       -.|.+.+|..+.+. .+.+.+|-.....+....+  . +.++.+.   ..+.++|
T Consensus       149 QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhI  227 (327)
T d1utca2         149 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI  227 (327)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEE
T ss_pred             eEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-CccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEE
Confidence            567777888888876542       24678899986553 3344444433333322211  1 1333332   2357888


Q ss_pred             EEcCCCee--------eeeccc---CCcceEEEEEEEcCCCCceEEEEEEEcCCCcEEEEEeCCCceEEEEeeecCCCeE
Q 015490          236 WDLASSAV--------ATPLAK---ENDELFASCRFSPLNNEDYVLYIAAITDRGASIVTWNTTTWKRIRTKQVVREPVS  304 (406)
Q Consensus       236 wd~~~~~~--------~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~  304 (406)
                      -++.....        ...+..   ..++..-++..++...   ++|++   ..-|.|++||+.++.++..-+.....|.
T Consensus       228 iEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kyg---iiyvi---TK~G~i~lyDleTgt~i~~nRIs~~~iF  301 (327)
T d1utca2         228 IEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD---VVFLI---TKYGYIHLYDLETGTCIYMNRISGETIF  301 (327)
T ss_dssp             EECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTT---EEEEE---ETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             EEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCC---EEEEE---ecCcEEEEEEcccccEEEEeecCCCceE
Confidence            88765211        111111   1123344677776655   34443   4689999999999999988887777777


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEE
Q 015490          305 SFNVSADGKLLAVGTASGDISI  326 (406)
Q Consensus       305 ~~~~sp~~~~l~~~~~dg~i~i  326 (406)
                      ..+-+.+..-+++...+|.|.-
T Consensus       302 ~~a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         302 VTAPHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             EEEEETTTTEEEEEETTSEEEE
T ss_pred             EeccCCCCceEEEECCCCeEEE
Confidence            6665555555556667777654