Citrus Sinensis ID: 015514

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-----
Protein Sequence
MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSDSKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQALPLVSTFWGILLFGEYRKSSRRTYILLVSMLSMFIVAVAVLMASAGHRK
Secondary Structure (PSIPRED)
ccEEccHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEcccccccccccEEEcHHHHHHHHHHHHHHHHccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccHHHHHHHHHHHHHcccccHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cEEEccHHHHHHHHHHHHHHHccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHEHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHccccHHHHHHHHHHHccEEEccccHHHHHHHHHHHHHHHHHHcHHHHHHcccHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHccccccHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mymveskaGAIVCMLFSLFFLGTWPAIMTLLerrgrppqhtylDYTMTNLLAAIIIAFTlgefgdarpNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGStfnyflddkinkaeilFPGIACFLVAVGLGSavhssnaadnkaklnnlpsdskpgtratfiptscetlpengikdpevgndtvgklkagtAGFLVEIENRRSIKVFGKSILIGLAITFFAGVCfslfspafnlatNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCgfgnglqfmggqaAGYAAADAVQALPLVSTFWGILLFGEYRKSSRRTYILLVSMLSMFIVAVAVLMASAGHRK
Flexible Loop (DISEMBL)
MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSnaadnkaklnnlpsdskpgtratfiptscetlpengikdpevgndTVGKLKAGTAGFLVEIENRRSIKVFGKSILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQALPLVSTFWGILLFGEYRKSSRRTYILLVSMLSMFIVAVAVLMASAGHRK
Low Complexity Region (SEG)
MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLsvtevisssitvvigstFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSnaadnkaklnnlPSDSKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLqfmggqaagyaaadavqaLPLVSTFWGILLFGEYRKSSRRTYILLVSMLSMFIVAVAVLMASAGHRK
Disordered region (IsUnstruct)
*******AGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAV***********************************************DTVGKLKAGTAGFLVEIENRRSIKVFGKSILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQALPLVSTFWGILLFGEYRKSSRRTYILLVSMLSMFIVAVAVLMA******
Disordered Region (DISOPRED)
MYM*ESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSA*********************PGTRATFIPTS*********************LKAGTAGFLVEIENR*S*KVFGKSILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQALPLVSTFWGILLFGEYRKSSRRTYILLVSMLSMFIVAVAVLMASA****
Disordered Region (DISEMBL)
MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSDSKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQALPLVSTFWGILLFGEYRKSSRRTYILLVSMLSMFIVAVAVLMASAGHRK
Disordered Region (DISPRO)
MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADN********************************************LKAGTAGFLVEIENRRSIKVFGKSILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQALPLVSTFWGILLFGEYRKSSRRTYILLVSMLSMFIVAVAVLMASA****
Transmembrane Helix (TMHMM)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (HMMTOP)
oooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
ooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSDSKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQALPLVSTFWGILLFGEYRKSSRRTYILLVSMLSMFIVAVAVLMASAGHRK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	405	2.2.26 [Sep-21-2011]
Q9ZPR7	390	Ureide permease 1 OS=Arab	yes	no	0.960	0.997	0.751	1e-167
Q9ZQ89	398	Ureide permease 2 OS=Arab	no	no	0.975	0.992	0.720	1e-161
Q9ZQ88	401	Ureide permease 4 OS=Arab	no	no	0.982	0.992	0.693	1e-153
Q93Z75	413	Ureide permease 5 OS=Arab	no	no	0.982	0.963	0.681	1e-153
Q41706	376	Probable ureide permease	N/A	no	0.916	0.986	0.658	1e-142
Q9ZPR6	256	Ureide permease 3 OS=Arab	no	no	0.632	1.0	0.665	1e-102
Q8NYZ3	287	Putative sugar uptake pro	N/A	no	0.353	0.498	0.288	0.0009
P0C0G9	287	Putative sugar uptake pro	N/A	no	0.353	0.498	0.288	0.0009
P0DB51	287	Putative sugar uptake pro	yes	no	0.353	0.498	0.288	0.0009
P0DB50	287	Putative sugar uptake pro	N/A	no	0.353	0.498	0.288	0.0009

>sp|Q9ZPR7|UPS1_ARATH Ureide permease 1 OS=Arabidopsis thaliana GN=UPS1 PE=1 SV=1

 Score =  587 bits (1512), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 305/406 (75%), Positives = 342/406 (84%), Gaps = 17/406 (4%)

Query: 1   MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTL 60
           MYM+ESK GAI CML +L FLGTWPAIMTL ERRGR PQHTYLDYT+TNLLAA+IIA TL
Sbjct: 1   MYMIESKGGAIACMLLALLFLGTWPAIMTLTERRGRLPQHTYLDYTLTNLLAAVIIALTL 60

Query: 61  GEFGDARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSI 120
           GE G +RPNF  QL++  DNW SV+FAMAGG+VLS+GNLATQYAWA+VGLSVTEVI++SI
Sbjct: 61  GEIGPSRPNFFTQLSQ--DNWQSVMFAMAGGIVLSLGNLATQYAWAYVGLSVTEVITASI 118

Query: 121 TVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSDSKP 180
           TVVIG+T NYFLDD+IN+AE+LFPG+ACFL+AV  GSAVH SNAADNK KL N  S    
Sbjct: 119 TVVIGTTLNYFLDDRINRAEVLFPGVACFLIAVCFGSAVHKSNAADNKTKLQNFKSLE-- 176

Query: 181 GTRATFIPTSCETLP-ENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIG 239
            T ++F     ET+   NG+        T GK K GTA FL+E+E +R+IKVFGKS +IG
Sbjct: 177 -TTSSF---EMETISASNGL--------TKGKAKEGTAAFLIELEKQRAIKVFGKSTIIG 224

Query: 240 LAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRF 299
           L ITFFAG+CFSLFSPAFNLATNDQWH LK GVP L VYTAFFYFS+S FV+ALILNIRF
Sbjct: 225 LVITFFAGICFSLFSPAFNLATNDQWHTLKHGVPKLNVYTAFFYFSISAFVVALILNIRF 284

Query: 300 LFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQALPL 359
           L+ PIL   RSSFKAYLNDWNGRGW+ LAG LCGFGNGLQFMGGQAAGYAAADAVQALPL
Sbjct: 285 LYWPILGLPRSSFKAYLNDWNGRGWSFLAGFLCGFGNGLQFMGGQAAGYAAADAVQALPL 344

Query: 360 VSTFWGILLFGEYRKSSRRTYILLVSMLSMFIVAVAVLMASAGHRK 405
           VSTFWGILLFGEYR+SSR+TY LL+SML MFIVAVAVLMAS+GHRK
Sbjct: 345 VSTFWGILLFGEYRRSSRKTYTLLISMLLMFIVAVAVLMASSGHRK 390

Transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient. Cotransports protons.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQ89|UPS2_ARATH Ureide permease 2 OS=Arabidopsis thaliana GN=UPS2 PE=2 SV=2

 Score =  567 bits (1461), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 294/408 (72%), Positives = 337/408 (82%), Gaps = 13/408 (3%)

Query: 1   MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTL 60
           MY+VESK GAI CML +L  LGTWPA++TLLERRGR PQHTYLDY++TNLLAAIIIAFT 
Sbjct: 1   MYLVESKGGAIACMLLALLSLGTWPAVLTLLERRGRLPQHTYLDYSITNLLAAIIIAFTF 60

Query: 61  GEFGDARP---NFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVIS 117
           G+ G  +P   NF+ QL +  DNWPSV+FAMAGG+VLS+GNL+TQYAWA VGLSVTEVI+
Sbjct: 61  GQIGSTKPDSPNFITQLAQ--DNWPSVMFAMAGGIVLSLGNLSTQYAWALVGLSVTEVIT 118

Query: 118 SSITVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSD 177
           SSITVVIGST NYFLDDKINKAEILFPG+ACFL+AV LGSAVH SNA DNKAKL +  + 
Sbjct: 119 SSITVVIGSTLNYFLDDKINKAEILFPGVACFLIAVCLGSAVHRSNADDNKAKLRDFETA 178

Query: 178 SKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSIL 237
            +  +  +        +  N  KD E    T  K K GTA FL+E+EN R+IKVFGK  +
Sbjct: 179 KQEASGPS------TEIGTNSSKDLETNVTT--KPKEGTARFLIELENTRAIKVFGKRKI 230

Query: 238 IGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNI 297
           IGLAITFFAG+CFSLFSPAFNLATNDQW+ LK+GVP L+VYTAFFYFSVS F+IALILN+
Sbjct: 231 IGLAITFFAGLCFSLFSPAFNLATNDQWNRLKQGVPKLVVYTAFFYFSVSCFIIALILNV 290

Query: 298 RFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQAL 357
            FL+ P+L   +SSFKAYLNDWNGR WA LAG LCGFGNGLQFMGGQAAGYAAAD+VQAL
Sbjct: 291 VFLYYPVLGLPKSSFKAYLNDWNGRYWAFLAGFLCGFGNGLQFMGGQAAGYAAADSVQAL 350

Query: 358 PLVSTFWGILLFGEYRKSSRRTYILLVSMLSMFIVAVAVLMASAGHRK 405
           PLVSTFWG++LFGEYR+SSR+TY+LL  ML MFI AVAVLMAS+GHRK
Sbjct: 351 PLVSTFWGVVLFGEYRRSSRKTYLLLFCMLFMFISAVAVLMASSGHRK 398

Transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQ88|UPS4_ARATH Ureide permease 4 OS=Arabidopsis thaliana GN=UPS4 PE=2 SV=2

 Score =  542 bits (1397), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 283/408 (69%), Positives = 333/408 (81%), Gaps = 10/408 (2%)

Query: 1   MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTL 60
           MY+VESKAGAI CM+ SL  LG+WPAI+TLLERRGR PQHT+LD+   NLLAAI+IAF+L
Sbjct: 1   MYVVESKAGAIGCMILSLCCLGSWPAILTLLERRGRLPQHTFLDFATANLLAAIVIAFSL 60

Query: 61  GEFGDA---RPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVIS 117
           GE G +   +P+F  QL +  DNWPSVL A+AGGV+LSIGNLATQYA+AFVGLSVTEVI+
Sbjct: 61  GEIGKSTFLKPDFTTQLPQ--DNWPSVLLAVAGGVLLSIGNLATQYAFAFVGLSVTEVIT 118

Query: 118 SSITVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSD 177
           +SITVVIG+T NYFLD+KINKAEILFPG+ CFL+AV LG+AVH+SNAAD K KL +LPS+
Sbjct: 119 ASITVVIGTTLNYFLDNKINKAEILFPGVGCFLIAVFLGAAVHASNAADVKEKLKSLPSE 178

Query: 178 SKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSIL 237
               +       + E  PE    D E       K KAGTAGF VE+EN+R+IKVFGKSI+
Sbjct: 179 DLYSSI-----ENGEDKPEIEKTDVESQEKLAEKAKAGTAGFYVELENKRAIKVFGKSIM 233

Query: 238 IGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNI 297
           IGL IT FAG+  SLFSPAFNLATNDQW  L KGVP L+VYTAFFYFS++GF+I+LILN+
Sbjct: 234 IGLFITLFAGISLSLFSPAFNLATNDQWSTLPKGVPKLVVYTAFFYFSIAGFLISLILNL 293

Query: 298 RFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQAL 357
            FL+ P++   RSS K Y+ D  GRGWA+ AG LCGFGNGLQFMGGQAAGYAAAD+VQAL
Sbjct: 294 IFLYRPMVGLARSSLKKYIYDSKGRGWAVFAGFLCGFGNGLQFMGGQAAGYAAADSVQAL 353

Query: 358 PLVSTFWGILLFGEYRKSSRRTYILLVSMLSMFIVAVAVLMASAGHRK 405
           PLVSTFWGI+LFGEYRKSS+RTY LLVSML+MF+ AVA+LMAS+GHRK
Sbjct: 354 PLVSTFWGIVLFGEYRKSSKRTYALLVSMLAMFVAAVAILMASSGHRK 401

Transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Z75|UPS5_ARATH Ureide permease 5 OS=Arabidopsis thaliana GN=UPS5 PE=2 SV=1

 Score =  540 bits (1392), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 278/408 (68%), Positives = 332/408 (81%), Gaps = 10/408 (2%)

Query: 1   MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTL 60
           +Y+VESK GAI+C+L SL  LGTWPA+M LLERRGR PQHTYLDY++TN LAAI IAF  
Sbjct: 9   IYVVESKGGAILCLLLSLLCLGTWPALMALLERRGRLPQHTYLDYSITNFLAAIFIAFVF 68

Query: 61  GEFGDAR---PNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVIS 117
           G  G++    P+F+ QLT+++DNWPSVLFAMAGGV LSIGNLATQY+ AFVGLSVTEV +
Sbjct: 69  GGIGESTHEAPSFITQLTQIQDNWPSVLFAMAGGVGLSIGNLATQYSLAFVGLSVTEVTA 128

Query: 118 SSITVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSD 177
           +SITVV+G+T NYFLD+ +N+A+ILF G+ CF+VAV LGSAVHSSN+AD KAKL  L  D
Sbjct: 129 ASITVVVGTTVNYFLDNGLNRADILFSGVGCFMVAVCLGSAVHSSNSADIKAKLGKLSGD 188

Query: 178 SKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSIL 237
            +     T  P  C+ L   G+++ E     +  +K G+A FL+ +EN+R+IKV GKS++
Sbjct: 189 CE-----TVTPEECQRL--FGVEEEEEEEKEMENVKEGSAAFLIALENKRAIKVLGKSMV 241

Query: 238 IGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNI 297
           +GL ITFFAG+ FSLFSP FNLATNDQWH LK+GVP LIVYTAFFYFS+S FVIA+ LNI
Sbjct: 242 VGLGITFFAGLSFSLFSPLFNLATNDQWHTLKQGVPKLIVYTAFFYFSLSCFVIAVALNI 301

Query: 298 RFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQAL 357
            FL+ P+LD+ RSSF+ YL+DWNGRGWAL AGLLCGFGNGLQFMGGQAAGYAA+DAVQAL
Sbjct: 302 SFLYKPVLDSPRSSFREYLSDWNGRGWALAAGLLCGFGNGLQFMGGQAAGYAASDAVQAL 361

Query: 358 PLVSTFWGILLFGEYRKSSRRTYILLVSMLSMFIVAVAVLMASAGHRK 405
           PLVSTFWGI LFGEYR+SS RTY LLV ML MF VAV +LMASAG R+
Sbjct: 362 PLVSTFWGIYLFGEYRRSSTRTYALLVGMLVMFTVAVGLLMASAGERE 409

Transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds.

Arabidopsis thaliana (taxid: 3702)

>sp|Q41706|UPSA3_VIGUN Probable ureide permease A3 (Fragment) OS=Vigna unguiculata GN=A3 PE=2 SV=2

 Score =  503 bits (1296), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 253/384 (65%), Positives = 302/384 (78%), Gaps = 13/384 (3%)

Query: 2   YMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLG 61
           ++VESK GAI CM  +LFFLGTWPA++T+LERRGR PQHTYLDY++TN  AA++IAFT G
Sbjct: 1   HLVESKGGAIACMFLALFFLGTWPALLTMLERRGRLPQHTYLDYSITNFFAALLIAFTFG 60

Query: 62  EFGDARP---NFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISS 118
           E G  +P   NF+ QL +  DNWPSVLFAM GGVVLS+GNL++QYA+AFVGLSVTEVI++
Sbjct: 61  EIGKGKPDEPNFLAQLAQ--DNWPSVLFAMGGGVVLSLGNLSSQYAFAFVGLSVTEVITA 118

Query: 119 SITVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLG-SAVHSSNAADNKAKLNNLPSD 177
           SITVVIG+T NYFLDDKINKAEILFPG+ CFL+AV LG    +SSNA+DNKAKL+N  SD
Sbjct: 119 SITVVIGTTLNYFLDDKINKAEILFPGVGCFLIAVFLGFCRFNSSNASDNKAKLSNYTSD 178

Query: 178 SKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSIL 237
            K       +  S +       KD E G+ +   ++AGTA FL+E+E RR+IKVFGKS L
Sbjct: 179 YKE------VAISSKESDLVKSKDLERGSSSADNVEAGTAVFLLELEERRAIKVFGKSTL 232

Query: 238 IGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNI 297
           IGLA+TF AG+CFS+FSPAFNLATNDQWH L  G+PHL VYTAFFYFS+S FVIA+ILNI
Sbjct: 233 IGLALTFSAGLCFSMFSPAFNLATNDQWHTLPNGIPHLTVYTAFFYFSISCFVIAIILNI 292

Query: 298 RFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQAL 357
            FL+ P+L+  +SS KAYL D +GR WALLAGLLCGFGN LQFMGGQAAGY      +  
Sbjct: 293 TFLYHPVLNLPKSSLKAYLADSDGRIWALLAGLLCGFGNSLQFMGGQAAGYQQQSLCRHF 352

Query: 358 PLVSTFWGILLFGEYRKSSRRTYI 381
            L   FWG+LLFGEYR+SSR+TYI
Sbjct: 353 -LCKHFWGVLLFGEYRRSSRKTYI 375

Transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds.

Vigna unguiculata (taxid: 3917)

>sp|Q9ZPR6|UPS3_ARATH Ureide permease 3 OS=Arabidopsis thaliana GN=UPS3 PE=2 SV=2

 Score =  372 bits (955), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 183/275 (66%), Positives = 213/275 (77%), Gaps = 19/275 (6%)

Query: 1   MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTL 60
           MY++ESK G I CML +L FLGTWPAIMTL ERRGR PQHTYLDYT+TNLLAA+IIAFTL
Sbjct: 1   MYVIESKGGTITCMLLALLFLGTWPAIMTLTERRGRLPQHTYLDYTLTNLLAAVIIAFTL 60

Query: 61  GEFGDARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSI 120
           GE   +RPNF  QL++  DNWPSV+FAMAGG+ LS+G LATQYAWAFVGLSVTEVI++SI
Sbjct: 61  GEISPSRPNFTTQLSQ--DNWPSVMFAMAGGIFLSLGTLATQYAWAFVGLSVTEVITASI 118

Query: 121 TVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSDSKP 180
            VVIG+T NYFLDD+IN+AE+LFPG+ACFL+AV  GSAVH SNAADNK+KL    S    
Sbjct: 119 AVVIGTTLNYFLDDRINRAEVLFPGVACFLIAVCFGSAVHKSNAADNKSKLQGFKS---- 174

Query: 181 GTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIGL 240
                   TS   +  + IK+        GK K GTA FL+E+E +R+IKVFGKS +IGL
Sbjct: 175 -----LETTSSFQMETSSIKE--------GKAKVGTADFLIEVEKQRAIKVFGKSTIIGL 221

Query: 241 AITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHL 275
           AITFFAG+CFSL SPA +LATNDQWH LK GV  L
Sbjct: 222 AITFFAGICFSLISPAVSLATNDQWHTLKHGVGTL 256

Transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8NYZ3|Y2243_STRP8 Putative sugar uptake protein spyM18_2243 OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) GN=spyM18_2243 PE=3 SV=1

 Score = 45.1 bits (105), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 72/163 (44%), Gaps = 20/163 (12%)

Query: 23  TWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWP 82
           TW +I  +  + G  P    L  T   LL      F+L  +   RP    QL      W 
Sbjct: 13  TWGSIGFVSNKIGGKPSQQTLGMTFGALL------FSLAVWLIVRPEMTLQL------W- 59

Query: 83  SVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFLDDKINK-AEI 141
             LF + GG + SIG     +A  ++G+SV   +SS   +V+GS     +  +  +  + 
Sbjct: 60  --LFGILGGFIWSIGQTGQFHAMQYMGVSVANPLSSGSQLVLGSLIGVLVFHEWTRPMQF 117

Query: 142 LFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSDSKPGTRA 184
           +   +A  L+ VG      SS   D  A++N+L + SK G RA
Sbjct: 118 VVGSLALLLLIVGF---YFSSKQDDANAQVNHLHNFSK-GFRA 156

Streptococcus pyogenes serotype M18 (taxid: 301451)

>sp|P0C0G9|Y2205_STRP1 Putative sugar uptake protein SPy_2205/M5005_Spy1856 OS=Streptococcus pyogenes serotype M1 GN=SPy_2205 PE=3 SV=1

 Score = 45.1 bits (105), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 72/163 (44%), Gaps = 20/163 (12%)

Query: 23  TWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWP 82
           TW +I  +  + G  P    L  T   LL      F+L  +   RP    QL      W 
Sbjct: 13  TWGSIGFVSNKIGGKPSQQTLGMTFGALL------FSLAVWLIVRPEMTLQL------W- 59

Query: 83  SVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFLDDKINK-AEI 141
             LF + GG + SIG     +A  ++G+SV   +SS   +V+GS     +  +  +  + 
Sbjct: 60  --LFGILGGFIWSIGQTGQFHAMQYMGVSVANPLSSGSQLVLGSLIGVLVFHEWTRPMQF 117

Query: 142 LFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSDSKPGTRA 184
           +   +A  L+ VG      SS   D  A++N+L + SK G RA
Sbjct: 118 VVGSLALLLLIVGF---YFSSKQDDANAQVNHLHNFSK-GFRA 156

Streptococcus pyogenes serotype M1 (taxid: 301447)

>sp|P0DB51|Y1856_STRPQ Putative sugar uptake protein SPs1852 OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=SPs1852 PE=3 SV=1

 Score = 45.1 bits (105), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 72/163 (44%), Gaps = 20/163 (12%)

Query: 23  TWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWP 82
           TW +I  +  + G  P    L  T   LL      F+L  +   RP    QL      W 
Sbjct: 13  TWGSIGFVSNKIGGKPSQQTLGMTFGALL------FSLAVWLIVRPEMTLQL------W- 59

Query: 83  SVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFLDDKINK-AEI 141
             LF + GG + SIG     +A  ++G+SV   +SS   +V+GS     +  +  +  + 
Sbjct: 60  --LFGILGGFIWSIGQTGQFHAMQYMGVSVANPLSSGSQLVLGSLIGVLVFHEWTRPMQF 117

Query: 142 LFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSDSKPGTRA 184
           +   +A  L+ VG      SS   D  A++N+L + SK G RA
Sbjct: 118 VVGSLALLLLIVGF---YFSSKQDDANAQVNHLHNFSK-GFRA 156

Streptococcus pyogenes serotype M3 (strain SSI-1) (taxid: 193567)

>sp|P0DB50|Y1856_STRP3 Putative sugar uptake protein SpyM3_1856 OS=Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315) GN=SpyM3_1856 PE=3 SV=1

 Score = 45.1 bits (105), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 72/163 (44%), Gaps = 20/163 (12%)

Query: 23  TWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWP 82
           TW +I  +  + G  P    L  T   LL      F+L  +   RP    QL      W 
Sbjct: 13  TWGSIGFVSNKIGGKPSQQTLGMTFGALL------FSLAVWLIVRPEMTLQL------W- 59

Query: 83  SVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFLDDKINK-AEI 141
             LF + GG + SIG     +A  ++G+SV   +SS   +V+GS     +  +  +  + 
Sbjct: 60  --LFGILGGFIWSIGQTGQFHAMQYMGVSVANPLSSGSQLVLGSLIGVLVFHEWTRPMQF 117

Query: 142 LFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSDSKPGTRA 184
           +   +A  L+ VG      SS   D  A++N+L + SK G RA
Sbjct: 118 VVGSLALLLLIVGF---YFSSKQDDANAQVNHLHNFSK-GFRA 156

Streptococcus pyogenes serotype M3 (taxid: 301448)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	405
224098968	398	predicted protein [Populus trichocarpa]	0.975	0.992	0.766	1e-171
357487617	397	Ureide permease [Medicago truncatula] gi	0.977	0.997	0.775	1e-169
356499891	395	PREDICTED: ureide permease 2-like [Glyci	0.975	1.0	0.770	1e-168
255542034	406	Ureide permease, putative [Ricinus commu	0.995	0.992	0.757	1e-166
18395580	390	ureide permease 1 [Arabidopsis thaliana]	0.960	0.997	0.751	1e-165
110738430	390	hypothetical protein [Arabidopsis thalia	0.960	0.997	0.748	1e-164
359472811	397	PREDICTED: ureide permease 2-like [Vitis	0.962	0.982	0.756	1e-164
297814672	390	predicted protein [Arabidopsis lyrata su	0.960	0.997	0.738	1e-162
297814656	402	hypothetical protein ARALYDRAFT_484262 [	0.980	0.987	0.726	1e-161
449434726	400	PREDICTED: ureide permease 2-like [Cucum	0.977	0.99	0.727	1e-160

>gi|224098968|ref|XP_002311338.1| predicted protein [Populus trichocarpa] gi|222851158|gb|EEE88705.1| predicted protein [Populus trichocarpa]

 Score =  607 bits (1566), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 312/407 (76%), Positives = 352/407 (86%), Gaps = 12/407 (2%)

Query: 1   MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTL 60
           MY+VESK GAI CML +LFFLGTWPA+MTLLERRGR PQHTYLDY++TNLLAA+IIAFT 
Sbjct: 1   MYVVESKGGAIACMLLALFFLGTWPAVMTLLERRGRLPQHTYLDYSITNLLAAVIIAFTF 60

Query: 61  GEFGDAR---PNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVIS 117
           GE G +    PNF+ QL++L DNWPSV+FAMAGGVVLS+GNL+TQYAWAFVGLSVTEVI+
Sbjct: 61  GEIGKSTHEAPNFLTQLSQLSDNWPSVMFAMAGGVVLSLGNLSTQYAWAFVGLSVTEVIT 120

Query: 118 SSITVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSD 177
           +SITVVIG+T NYFLDDKINKAEILFPG+ CFL+AV LGSAVHSSNAADN+AKL  L SD
Sbjct: 121 ASITVVIGTTLNYFLDDKINKAEILFPGVGCFLIAVCLGSAVHSSNAADNRAKLKGLTSD 180

Query: 178 SKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSIL 237
           +K  T   FI +         +KD E G+ T  + KAGTA FL+E+ENRRSIKVFG+S L
Sbjct: 181 NKNVTEYAFIFS---------LKDMENGSSTPERAKAGTADFLIELENRRSIKVFGRSTL 231

Query: 238 IGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNI 297
           IGL+ITFFAG CFSLFSPAFNLATNDQWH LKKGVP L+VYTAFF+FSVS FV+A+ILN+
Sbjct: 232 IGLSITFFAGFCFSLFSPAFNLATNDQWHTLKKGVPKLVVYTAFFWFSVSCFVLAIILNV 291

Query: 298 RFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQAL 357
            FL+ P+L+  RSS KAY+NDWNGRGWA LAGLLCGFGNGLQFMGGQAAGYAAADAVQAL
Sbjct: 292 TFLYRPVLNLPRSSLKAYVNDWNGRGWAFLAGLLCGFGNGLQFMGGQAAGYAAADAVQAL 351

Query: 358 PLVSTFWGILLFGEYRKSSRRTYILLVSMLSMFIVAVAVLMASAGHR 404
           PLVSTFWGILLFGEYRKSSRRTYILLV+ML MFI AV +LMAS+GHR
Sbjct: 352 PLVSTFWGILLFGEYRKSSRRTYILLVNMLFMFIAAVGILMASSGHR 398

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357487617|ref|XP_003614096.1| Ureide permease [Medicago truncatula] gi|355515431|gb|AES97054.1| Ureide permease [Medicago truncatula]

 Score =  600 bits (1548), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 315/406 (77%), Positives = 345/406 (84%), Gaps = 10/406 (2%)

Query: 1   MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTL 60
           MYMVES+ GAIVCML SLFFLGTWPA+MTLLERRGR PQHTYLDYT+TNLLAA+IIAFT 
Sbjct: 1   MYMVESRGGAIVCMLVSLFFLGTWPAVMTLLERRGRLPQHTYLDYTITNLLAAVIIAFTF 60

Query: 61  GEFGDARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSI 120
           G+ G   PNF+ QL++  DN PSVLFAMAGGVVLSIGNL+TQYAWAFVGLSV EVI+SSI
Sbjct: 61  GQIGTDHPNFLSQLSQ--DNLPSVLFAMAGGVVLSIGNLSTQYAWAFVGLSVVEVITSSI 118

Query: 121 TVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSDSKP 180
           TVVIG+T NYFLDDKINKAEILFPG+ CFLVAV LGSAVHSSN ADN+AKL++   D   
Sbjct: 119 TVVIGTTLNYFLDDKINKAEILFPGVGCFLVAVCLGSAVHSSNTADNQAKLSSHHKDVVQ 178

Query: 181 GTRATFIPTSCETLPENGIKD-PEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIG 239
           GT  +       TL E    D  ++ N T  K KAGTA FL+E+E +RSIKVFGKS  IG
Sbjct: 179 GTNLS-------TLNEESKDDSKDLENGTANKAKAGTAVFLIELEKKRSIKVFGKSTFIG 231

Query: 240 LAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRF 299
           LAITFFAGVCFSLFSPAFNLATNDQWH LKKGVPHL VYTAFFYFSVS FV+A+ILNI F
Sbjct: 232 LAITFFAGVCFSLFSPAFNLATNDQWHTLKKGVPHLSVYTAFFYFSVSCFVVAIILNITF 291

Query: 300 LFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQALPL 359
           L+ P+L+  +SS KAYL DWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQALPL
Sbjct: 292 LYHPVLNLPKSSLKAYLGDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQALPL 351

Query: 360 VSTFWGILLFGEYRKSSRRTYILLVSMLSMFIVAVAVLMASAGHRK 405
           VSTFWG++LFGEYRKSSRRTY LL SML MFI AVAVLMAS+GHRK
Sbjct: 352 VSTFWGVILFGEYRKSSRRTYTLLGSMLLMFIAAVAVLMASSGHRK 397

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499891|ref|XP_003518769.1| PREDICTED: ureide permease 2-like [Glycine max]

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 312/405 (77%), Positives = 345/405 (85%), Gaps = 10/405 (2%)

Query: 1   MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTL 60
           MY+VESK GAI CML SLFFLGTWPA+MTLLERRGR PQHTYLDYT+TNL+AA+IIAFT 
Sbjct: 1   MYVVESKVGAIGCMLVSLFFLGTWPAVMTLLERRGRLPQHTYLDYTLTNLMAAVIIAFTF 60

Query: 61  GEFGDARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSI 120
           G+ G+A+PNF+ QL++  DNWPSVLFAM GGVVLS+GNL+TQYAWAFVGLSV EVI+SSI
Sbjct: 61  GQIGNAQPNFLSQLSQ--DNWPSVLFAMGGGVVLSVGNLSTQYAWAFVGLSVVEVITSSI 118

Query: 121 TVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSDSKP 180
           TVVIG+T NYFLDDKINKAEILFPG+ CFL+AV LGSAVHSSN  DNKAKL    SD K 
Sbjct: 119 TVVIGTTLNYFLDDKINKAEILFPGVGCFLIAVCLGSAVHSSNTVDNKAKL----SDYKD 174

Query: 181 GTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIGL 240
             + T + T  ET  E   KD E   D   K KAGTA FL+E+E +RSIKV GKS  IGL
Sbjct: 175 AAKGTSVTTFKET-SEVESKDLE---DGTHKAKAGTAAFLIELEKKRSIKVLGKSTFIGL 230

Query: 241 AITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFL 300
           AITFFAGVCFSLFSPAFNLATNDQWH LKKGV HL VYTAFFYFSVS FVIA+ILNI FL
Sbjct: 231 AITFFAGVCFSLFSPAFNLATNDQWHTLKKGVHHLSVYTAFFYFSVSCFVIAIILNITFL 290

Query: 301 FSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQALPLV 360
           + P+L+  +SS KAYL+DW+GRGWA LAGLLCGFGNGLQFMGGQAAGYAAADAVQALPLV
Sbjct: 291 YHPVLNLPKSSLKAYLSDWDGRGWAFLAGLLCGFGNGLQFMGGQAAGYAAADAVQALPLV 350

Query: 361 STFWGILLFGEYRKSSRRTYILLVSMLSMFIVAVAVLMASAGHRK 405
           STFWGI+LFGEYRKSSRRTY+LL SML MF+ AVAVLMAS+GHRK
Sbjct: 351 STFWGIVLFGEYRKSSRRTYVLLGSMLLMFVAAVAVLMASSGHRK 395

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542034|ref|XP_002512081.1| Ureide permease, putative [Ricinus communis] gi|223549261|gb|EEF50750.1| Ureide permease, putative [Ricinus communis]

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 309/408 (75%), Positives = 353/408 (86%), Gaps = 5/408 (1%)

Query: 1   MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTL 60
           MYM+ESK GAI+CML SLFFLGTWPAIMTLLERRGR PQHTYLDY++TNLLAA+IIA T 
Sbjct: 1   MYMIESKGGAIICMLLSLFFLGTWPAIMTLLERRGRLPQHTYLDYSITNLLAAVIIALTF 60

Query: 61  GEFGDA---RPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVIS 117
           GE G++    PNF+ Q+++  DNWPS++FAMAGG+VLSIGNL+TQYAWAFVGLSV EVI+
Sbjct: 61  GEIGNSTPESPNFLTQISQ--DNWPSIMFAMAGGIVLSIGNLSTQYAWAFVGLSVVEVIT 118

Query: 118 SSITVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSD 177
           SSITVV+G+T NYFLDD+IN+AEILFPG+ CFL+AV LGSAVHSSNAADNKAKL N  SD
Sbjct: 119 SSITVVLGTTMNYFLDDRINRAEILFPGVGCFLIAVCLGSAVHSSNAADNKAKLKNFSSD 178

Query: 178 SKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSIL 237
            K  T  T    + E    NG KDPE GN   GK KAGTA FLVE+E++RSIKVFGKS L
Sbjct: 179 YKLRTVDTGSSITKEESTSNGSKDPETGNVPAGKAKAGTAAFLVELESKRSIKVFGKSTL 238

Query: 238 IGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNI 297
           IGLAITFFAGVCFSLFSPAFN+ATNDQWH LKKGVP L+VYTAFF+FSVS F++A+ILNI
Sbjct: 239 IGLAITFFAGVCFSLFSPAFNIATNDQWHTLKKGVPKLVVYTAFFWFSVSCFILAIILNI 298

Query: 298 RFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQAL 357
            FL+ P+L+  +S+ KAY+ND NGRGWA LAG LCGFGNGLQFMGGQAAGYAAADAVQAL
Sbjct: 299 IFLYRPVLNLPKSTLKAYVNDGNGRGWAFLAGFLCGFGNGLQFMGGQAAGYAAADAVQAL 358

Query: 358 PLVSTFWGILLFGEYRKSSRRTYILLVSMLSMFIVAVAVLMASAGHRK 405
           PLVSTFWGI++F EYRKSSR+TY+LL+SMLSMFIVAV VLMAS+GHRK
Sbjct: 359 PLVSTFWGIVIFKEYRKSSRKTYVLLISMLSMFIVAVGVLMASSGHRK 406

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18395580|ref|NP_565303.1| ureide permease 1 [Arabidopsis thaliana] gi|68566149|sp|Q9ZPR7.1|UPS1_ARATH RecName: Full=Ureide permease 1; Short=AtUPS1 gi|4406756|gb|AAD20067.1| expressed protein [Arabidopsis thaliana] gi|21554091|gb|AAM63172.1| putative integral membrane protein [Arabidopsis thaliana] gi|115646808|gb|ABJ17125.1| At2g03590 [Arabidopsis thaliana] gi|330250624|gb|AEC05718.1| ureide permease 1 [Arabidopsis thaliana]

 Score =  587 bits (1512), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 305/406 (75%), Positives = 342/406 (84%), Gaps = 17/406 (4%)

Query: 1   MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTL 60
           MYM+ESK GAI CML +L FLGTWPAIMTL ERRGR PQHTYLDYT+TNLLAA+IIA TL
Sbjct: 1   MYMIESKGGAIACMLLALLFLGTWPAIMTLTERRGRLPQHTYLDYTLTNLLAAVIIALTL 60

Query: 61  GEFGDARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSI 120
           GE G +RPNF  QL++  DNW SV+FAMAGG+VLS+GNLATQYAWA+VGLSVTEVI++SI
Sbjct: 61  GEIGPSRPNFFTQLSQ--DNWQSVMFAMAGGIVLSLGNLATQYAWAYVGLSVTEVITASI 118

Query: 121 TVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSDSKP 180
           TVVIG+T NYFLDD+IN+AE+LFPG+ACFL+AV  GSAVH SNAADNK KL N  S    
Sbjct: 119 TVVIGTTLNYFLDDRINRAEVLFPGVACFLIAVCFGSAVHKSNAADNKTKLQNFKSLE-- 176

Query: 181 GTRATFIPTSCETLP-ENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIG 239
            T ++F     ET+   NG+        T GK K GTA FL+E+E +R+IKVFGKS +IG
Sbjct: 177 -TTSSF---EMETISASNGL--------TKGKAKEGTAAFLIELEKQRAIKVFGKSTIIG 224

Query: 240 LAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRF 299
           L ITFFAG+CFSLFSPAFNLATNDQWH LK GVP L VYTAFFYFS+S FV+ALILNIRF
Sbjct: 225 LVITFFAGICFSLFSPAFNLATNDQWHTLKHGVPKLNVYTAFFYFSISAFVVALILNIRF 284

Query: 300 LFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQALPL 359
           L+ PIL   RSSFKAYLNDWNGRGW+ LAG LCGFGNGLQFMGGQAAGYAAADAVQALPL
Sbjct: 285 LYWPILGLPRSSFKAYLNDWNGRGWSFLAGFLCGFGNGLQFMGGQAAGYAAADAVQALPL 344

Query: 360 VSTFWGILLFGEYRKSSRRTYILLVSMLSMFIVAVAVLMASAGHRK 405
           VSTFWGILLFGEYR+SSR+TY LL+SML MFIVAVAVLMAS+GHRK
Sbjct: 345 VSTFWGILLFGEYRRSSRKTYTLLISMLLMFIVAVAVLMASSGHRK 390

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110738430|dbj|BAF01141.1| hypothetical protein [Arabidopsis thaliana]

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 304/406 (74%), Positives = 342/406 (84%), Gaps = 17/406 (4%)

Query: 1   MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTL 60
           MYM+ESK GAI CML +L FLGTWPAIMTL ERRGR PQHTYLDYT+TNLLAA+IIA TL
Sbjct: 1   MYMIESKGGAIACMLLALLFLGTWPAIMTLTERRGRLPQHTYLDYTLTNLLAAVIIALTL 60

Query: 61  GEFGDARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSI 120
           GE G +RPNF  QL++  DNW SV+FAMAGG+VLS+GNLATQYAWA+VGLSVTEVI++SI
Sbjct: 61  GEIGPSRPNFFTQLSQ--DNWQSVMFAMAGGIVLSLGNLATQYAWAYVGLSVTEVITASI 118

Query: 121 TVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSDSKP 180
           TVVIG+T NYFLDD+IN+AE+LFPG+ACFL+AV  GSAVH SNAADNK KL N  S    
Sbjct: 119 TVVIGTTLNYFLDDRINRAEVLFPGVACFLIAVCFGSAVHKSNAADNKTKLQNFKSLE-- 176

Query: 181 GTRATFIPTSCETLP-ENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIG 239
            T ++F     ET+   NG+        T GK K GTA FL+E+E +R+IKVFGKS +IG
Sbjct: 177 -TTSSF---EMETISASNGL--------TKGKAKEGTAAFLIELEKQRAIKVFGKSTIIG 224

Query: 240 LAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRF 299
           L ITFFAG+CFSLFSPAFNLATNDQWH LK GVP L VYTAFFYFS+S FV+ALILNIRF
Sbjct: 225 LVITFFAGICFSLFSPAFNLATNDQWHTLKHGVPKLNVYTAFFYFSISAFVVALILNIRF 284

Query: 300 LFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQALPL 359
           L+ PIL   RSSFKAYLNDWNGRGW+ LAG LCGFG+GLQFMGGQAAGYAAADAVQALPL
Sbjct: 285 LYWPILGLPRSSFKAYLNDWNGRGWSFLAGFLCGFGDGLQFMGGQAAGYAAADAVQALPL 344

Query: 360 VSTFWGILLFGEYRKSSRRTYILLVSMLSMFIVAVAVLMASAGHRK 405
           VSTFWGILLFGEYR+SSR+TY LL+SML MFIVAVAVLMAS+GHRK
Sbjct: 345 VSTFWGILLFGEYRRSSRKTYTLLISMLLMFIVAVAVLMASSGHRK 390

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472811|ref|XP_003631196.1| PREDICTED: ureide permease 2-like [Vitis vinifera]

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 311/411 (75%), Positives = 342/411 (83%), Gaps = 21/411 (5%)

Query: 1   MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTL 60
           MY+VESK GAI CML SL FLGTWPAIMTLLERRGR PQHTYLDYT+TNLLAA+IIA T 
Sbjct: 1   MYLVESKGGAIACMLLSLSFLGTWPAIMTLLERRGRLPQHTYLDYTITNLLAAVIIALTF 60

Query: 61  GEFGDAR---PNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVIS 117
           G+ G +    PNF+ QL++  DNWP +L AMAGGVVLS+GNL+TQYAWAFVGLSVTEVI+
Sbjct: 61  GQIGSSTAEVPNFLTQLSQ--DNWPCILLAMAGGVVLSLGNLSTQYAWAFVGLSVTEVIT 118

Query: 118 SSITVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSD 177
           SSITVVIG+T NYFLDDKINKAEILFPG+ CFL+AV L SAVHSSNAADNKAKL      
Sbjct: 119 SSITVVIGTTLNYFLDDKINKAEILFPGVGCFLIAVCLASAVHSSNAADNKAKL------ 172

Query: 178 SKPGTRATFIPTSC--ETLPENGIKDPEVGND-TVGKLKAGTAGFLVEIENRRSIKVFGK 234
                 A  I TS   E  P NG  DPE G+  T  K K GTA FL+E+E RRSIKVFGK
Sbjct: 173 -----MAQGIDTSVVKEASPNNG--DPENGSSGTAPKAKFGTADFLIEVEKRRSIKVFGK 225

Query: 235 SILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALI 294
           S LIGL ITFFAGVCFSLFSPAFNLATNDQWH LK+GVPHL+VYTAFFYFSVS FV+ALI
Sbjct: 226 STLIGLVITFFAGVCFSLFSPAFNLATNDQWHTLKEGVPHLVVYTAFFYFSVSCFVLALI 285

Query: 295 LNIRFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAV 354
           LNI FL+ P++D  +S+ +AYL+DWNGRGWA LAGLLCGFGNGLQFMGGQAAGYAAADAV
Sbjct: 286 LNIIFLYRPVMDAPKSTLRAYLSDWNGRGWAFLAGLLCGFGNGLQFMGGQAAGYAAADAV 345

Query: 355 QALPLVSTFWGILLFGEYRKSSRRTYILLVSMLSMFIVAVAVLMASAGHRK 405
           QALPLVSTFWGI+LFGEYRKSSRRTYILL SML MFI AV +LM S+GHRK
Sbjct: 346 QALPLVSTFWGIVLFGEYRKSSRRTYILLGSMLFMFIAAVGILMGSSGHRK 396

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297814672|ref|XP_002875219.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297321057|gb|EFH51478.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 300/406 (73%), Positives = 340/406 (83%), Gaps = 17/406 (4%)

Query: 1   MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTL 60
           MYM+ESK GAI CML +L FLGTWPAIMTL ERRGR PQHTYLDYT+TNLLAA+IIA TL
Sbjct: 1   MYMIESKGGAIACMLLALLFLGTWPAIMTLTERRGRLPQHTYLDYTLTNLLAAVIIALTL 60

Query: 61  GEFGDARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSI 120
           GE G +RPNF  QL++  DNW SV+FAMAGG+VLS+GNLATQYAWA+VGLSVTEVI++SI
Sbjct: 61  GEIGPSRPNFFTQLSQ--DNWQSVMFAMAGGIVLSLGNLATQYAWAYVGLSVTEVIAASI 118

Query: 121 TVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSDSKP 180
           TVVIG+T NYFLDD+IN+AE+LFPG+ACFL+AV  GSAVH SNAADNK+K  +  S    
Sbjct: 119 TVVIGTTLNYFLDDRINRAEVLFPGVACFLIAVCFGSAVHKSNAADNKSKFQDFKSLE-- 176

Query: 181 GTRATFIPTSCETLP-ENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIG 239
            T ++F     ET+   NG+          GK K GTA FL+E+E +R+IKVFGKS +IG
Sbjct: 177 -TASSF---EMETVSANNGLAK--------GKAKEGTAAFLIELEKQRAIKVFGKSTIIG 224

Query: 240 LAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRF 299
           LAITFFAG+CFSLFSPAFNLATNDQWH L+ GVP L VYTAFFYFS+S FV+ALILNIRF
Sbjct: 225 LAITFFAGICFSLFSPAFNLATNDQWHTLEHGVPKLNVYTAFFYFSISAFVVALILNIRF 284

Query: 300 LFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQALPL 359
           L+ PIL   RSSFK YLNDWNGRGW+ LAG LCGFGNGLQFMGGQAAGYAAADAVQALPL
Sbjct: 285 LYWPILGLPRSSFKDYLNDWNGRGWSFLAGFLCGFGNGLQFMGGQAAGYAAADAVQALPL 344

Query: 360 VSTFWGILLFGEYRKSSRRTYILLVSMLSMFIVAVAVLMASAGHRK 405
           VSTFWGILLFGEYR+SSR+TY  L+SML MFIVAVAVLMAS+GHRK
Sbjct: 345 VSTFWGILLFGEYRRSSRKTYTFLISMLLMFIVAVAVLMASSGHRK 390

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297814656|ref|XP_002875211.1| hypothetical protein ARALYDRAFT_484262 [Arabidopsis lyrata subsp. lyrata] gi|297321049|gb|EFH51470.1| hypothetical protein ARALYDRAFT_484262 [Arabidopsis lyrata subsp. lyrata]

 Score =  575 bits (1483), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 298/410 (72%), Positives = 341/410 (83%), Gaps = 13/410 (3%)

Query: 1   MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTL 60
           MY+VESK GAI CML +L  LGTWPAI+TLLERRGR PQHTYLDY++TNLLAAIIIAFT 
Sbjct: 1   MYLVESKGGAIACMLLALLSLGTWPAILTLLERRGRLPQHTYLDYSITNLLAAIIIAFTF 60

Query: 61  GEFGDARP---NFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVIS 117
           G+ G  +P   NF+ QL +  DNWPSV+FAMAGG+VLS+GNLATQYAWA VGLSVTEV++
Sbjct: 61  GQIGSTKPDSPNFITQLAQ--DNWPSVMFAMAGGIVLSLGNLATQYAWALVGLSVTEVVT 118

Query: 118 SSITVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSD 177
           SSITVVIGST NYFLDDKINKAEILFPG+ACFL+AV LGSAVH SNA DNKAKL +    
Sbjct: 119 SSITVVIGSTLNYFLDDKINKAEILFPGVACFLIAVCLGSAVHRSNADDNKAKLRDFEMA 178

Query: 178 SKPGTRATFIPTSCETLPENGIKDPE--VGNDTVGKLKAGTAGFLVEIENRRSIKVFGKS 235
            +  +  +        +  N  KD E  V ++T  K K GTA FL+E+EN+R+IKVFGK 
Sbjct: 179 KQEASGPS------TEIGTNSSKDLETNVTDETSTKPKEGTARFLIELENKRAIKVFGKR 232

Query: 236 ILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALIL 295
            +IGLAITFFAG+CFSLFSPAFNLATNDQWH LK+GVP L++YTAFFYFSVS F+IALIL
Sbjct: 233 KIIGLAITFFAGLCFSLFSPAFNLATNDQWHRLKQGVPKLVLYTAFFYFSVSCFIIALIL 292

Query: 296 NIRFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQ 355
           NI FL+ P+L   +SSFKAYLNDWNGR WA LAG LCGFGNGLQFMGGQAAGYAAAD+VQ
Sbjct: 293 NIGFLYHPVLGLPKSSFKAYLNDWNGRYWAFLAGFLCGFGNGLQFMGGQAAGYAAADSVQ 352

Query: 356 ALPLVSTFWGILLFGEYRKSSRRTYILLVSMLSMFIVAVAVLMASAGHRK 405
           ALPLVSTFWG++LFGEYR+SSR+TY+LL SML MFI AVAVLMAS+GHRK
Sbjct: 353 ALPLVSTFWGVVLFGEYRRSSRKTYLLLFSMLFMFISAVAVLMASSGHRK 402

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434726|ref|XP_004135147.1| PREDICTED: ureide permease 2-like [Cucumis sativus] gi|449517164|ref|XP_004165616.1| PREDICTED: ureide permease 2-like [Cucumis sativus]

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 297/408 (72%), Positives = 341/408 (83%), Gaps = 12/408 (2%)

Query: 1   MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTL 60
           MY++ESK GAI CML +LFFLGTWPA++TLLERRGR PQHTYLDY++TN LAA+IIA TL
Sbjct: 1   MYVLESKGGAIACMLLALFFLGTWPALLTLLERRGRLPQHTYLDYSITNFLAAVIIALTL 60

Query: 61  GEFG---DARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVIS 117
           GE G   D  PNF+ QL +  DNW S +FAM GG+VLS+GNL+TQYA+A VGLSVTEVI+
Sbjct: 61  GEIGKSSDDSPNFIQQLYQ--DNWSSAMFAMGGGIVLSLGNLSTQYAFALVGLSVTEVIT 118

Query: 118 SSITVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSD 177
           +SITVVIG+T NYFLD+KINKAEILFPG+ACFL+AV LGSAVHSSN ADNKAKL+ L +D
Sbjct: 119 ASITVVIGTTVNYFLDNKINKAEILFPGVACFLIAVCLGSAVHSSNTADNKAKLDTLSTD 178

Query: 178 SKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSIL 237
           ++ G   T   +          KD    +    K KAGTA FLVE+ENRRSIKVFGKS  
Sbjct: 179 TEKGLNTTNAASFSN-------KDLARADYFSLKAKAGTADFLVELENRRSIKVFGKSAF 231

Query: 238 IGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNI 297
           +GL +TFFAGVCFSLFSPAFNLATNDQWH LK+GVPHL VYTAFFYFSVS F + +ILNI
Sbjct: 232 VGLFLTFFAGVCFSLFSPAFNLATNDQWHTLKEGVPHLNVYTAFFYFSVSCFFLGVILNI 291

Query: 298 RFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQAL 357
            FL+ PIL+  +++FKAY+NDWNGRGWALLAG LCGFGNGLQFMGGQAAGYAAADAVQAL
Sbjct: 292 AFLYRPILNLPKTTFKAYVNDWNGRGWALLAGFLCGFGNGLQFMGGQAAGYAAADAVQAL 351

Query: 358 PLVSTFWGILLFGEYRKSSRRTYILLVSMLSMFIVAVAVLMASAGHRK 405
           PLVSTFWGILLFGEYRKSS++TY+LL+SML MFIVAV VLMAS+GHRK
Sbjct: 352 PLVSTFWGILLFGEYRKSSKKTYVLLISMLFMFIVAVGVLMASSGHRK 399

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	405
TAIR|locus:2044214	390	UPS1 "ureide permease 1" [Arab	0.960	0.997	0.650	3.7e-135
TAIR|locus:2063814	398	UPS2 "AT2G03530" [Arabidopsis	0.975	0.992	0.625	3.2e-129
TAIR|locus:2197995	413	UPS5 "ureide permease 5" [Arab	0.982	0.963	0.590	1e-123
TAIR|locus:2063851	401	UPS4 "ureide permease 4" [Arab	0.982	0.992	0.600	1.9e-122

TAIR|locus:2044214 UPS1 "ureide permease 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1324 (471.1 bits), Expect = 3.7e-135, P = 3.7e-135
 Identities = 264/406 (65%), Positives = 298/406 (73%)

Query:     1 MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTL 60
             MYM+ESK GAI CML +L FLGTWPAIMTL ERRGR PQHTYLDYT+TNLLAA+IIA TL
Sbjct:     1 MYMIESKGGAIACMLLALLFLGTWPAIMTLTERRGRLPQHTYLDYTLTNLLAAVIIALTL 60

Query:    61 GEFGDARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLXXXXXXXXXX 120
             GE G +RPNF  QL++  DNW SV+FAMAGG+VLS+GNLATQYAWA+VGL          
Sbjct:    61 GEIGPSRPNFFTQLSQ--DNWQSVMFAMAGGIVLSLGNLATQYAWAYVGLSVTEVITASI 118

Query:   121 XXXXXXXFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSXXXXXXXXXXXXPSDSKP 180
                     NYFLDD+IN+AE+LFPG+ACFL+AV  GSAVH S             S    
Sbjct:   119 TVVIGTTLNYFLDDRINRAEVLFPGVACFLIAVCFGSAVHKSNAADNKTKLQNFKSLE-- 176

Query:   181 GTRATFIPTSCETLP-ENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIG 239
              T ++F     ET+   NG+        T GK K GTA FL+E+E +R+IKVFGKS +IG
Sbjct:   177 -TTSSF---EMETISASNGL--------TKGKAKEGTAAFLIELEKQRAIKVFGKSTIIG 224

Query:   240 LAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRF 299
             L ITFFAG+CFSLFSPAFNLATNDQWH LK GVP L VYTAFFYFS+S FV+ALILNIRF
Sbjct:   225 LVITFFAGICFSLFSPAFNLATNDQWHTLKHGVPKLNVYTAFFYFSISAFVVALILNIRF 284

Query:   300 LFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLXXXXXXXXXXXXXXXXXXLPL 359
             L+ PIL   RSSFKAYLNDWNGRGW+ LAG LCGFGNGL                  LPL
Sbjct:   285 LYWPILGLPRSSFKAYLNDWNGRGWSFLAGFLCGFGNGLQFMGGQAAGYAAADAVQALPL 344

Query:   360 VSTFWGILLFGEYRKSSRRTYILLVSMLSMFIVAVAVLMASAGHRK 405
             VSTFWGILLFGEYR+SSR+TY LL+SML MFIVAVAVLMAS+GHRK
Sbjct:   345 VSTFWGILLFGEYRRSSRKTYTLLISMLLMFIVAVAVLMASSGHRK 390

GO:0005739 "mitochondrion" evidence=ISM

GO:0005274 "allantoin uptake transmembrane transporter activity" evidence=IDA

GO:0015720 "allantoin transport" evidence=IDA

GO:0015931 "nucleobase-containing compound transport" evidence=IDA

TAIR|locus:2063814 UPS2 "AT2G03530" [Arabidopsis thaliana (taxid:3702)]

 Score = 1268 (451.4 bits), Expect = 3.2e-129, P = 3.2e-129
 Identities = 255/408 (62%), Positives = 295/408 (72%)

Query:     1 MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTL 60
             MY+VESK GAI CML +L  LGTWPA++TLLERRGR PQHTYLDY++TNLLAAIIIAFT 
Sbjct:     1 MYLVESKGGAIACMLLALLSLGTWPAVLTLLERRGRLPQHTYLDYSITNLLAAIIIAFTF 60

Query:    61 GEFGDARP---NFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLXXXXXXX 117
             G+ G  +P   NF+ QL +  DNWPSV+FAMAGG+VLS+GNL+TQYAWA VGL       
Sbjct:    61 GQIGSTKPDSPNFITQLAQ--DNWPSVMFAMAGGIVLSLGNLSTQYAWALVGLSVTEVIT 118

Query:   118 XXXXXXXXXXFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSXXXXXXXXXXXXPSD 177
                        NYFLDDKINKAEILFPG+ACFL+AV LGSAVH S              D
Sbjct:   119 SSITVVIGSTLNYFLDDKINKAEILFPGVACFLIAVCLGSAVHRSNADDNKAKLR----D 174

Query:   178 SKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSIL 237
              +   +    P++   +  N  KD E    T  K K GTA FL+E+EN R+IKVFGK  +
Sbjct:   175 FETAKQEASGPST--EIGTNSSKDLETNVTT--KPKEGTARFLIELENTRAIKVFGKRKI 230

Query:   238 IGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNI 297
             IGLAITFFAG+CFSLFSPAFNLATNDQW+ LK+GVP L+VYTAFFYFSVS F+IALILN+
Sbjct:   231 IGLAITFFAGLCFSLFSPAFNLATNDQWNRLKQGVPKLVVYTAFFYFSVSCFIIALILNV 290

Query:   298 RFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLXXXXXXXXXXXXXXXXXXL 357
              FL+ P+L   +SSFKAYLNDWNGR WA LAG LCGFGNGL                  L
Sbjct:   291 VFLYYPVLGLPKSSFKAYLNDWNGRYWAFLAGFLCGFGNGLQFMGGQAAGYAAADSVQAL 350

Query:   358 PLVSTFWGILLFGEYRKSSRRTYILLVSMLSMFIVAVAVLMASAGHRK 405
             PLVSTFWG++LFGEYR+SSR+TY+LL  ML MFI AVAVLMAS+GHRK
Sbjct:   351 PLVSTFWGVVLFGEYRRSSRKTYLLLFCMLFMFISAVAVLMASSGHRK 398

GO:0015505 "uracil:cation symporter activity" evidence=IGI

GO:0015931 "nucleobase-containing compound transport" evidence=IGI

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2197995 UPS5 "ureide permease 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1216 (433.1 bits), Expect = 1.0e-123, P = 1.0e-123
 Identities = 241/408 (59%), Positives = 289/408 (70%)

Query:     1 MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTL 60
             +Y+VESK GAI+C+L SL  LGTWPA+M LLERRGR PQHTYLDY++TN LAAI IAF  
Sbjct:     9 IYVVESKGGAILCLLLSLLCLGTWPALMALLERRGRLPQHTYLDYSITNFLAAIFIAFVF 68

Query:    61 GEFGDAR---PNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLXXXXXXX 117
             G  G++    P+F+ QLT+++DNWPSVLFAMAGGV LSIGNLATQY+ AFVGL       
Sbjct:    69 GGIGESTHEAPSFITQLTQIQDNWPSVLFAMAGGVGLSIGNLATQYSLAFVGLSVTEVTA 128

Query:   118 XXXXXXXXXXFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSXXXXXXXXXXXXPSD 177
                        NYFLD+ +N+A+ILF G+ CF+VAV LGSAVHSS              D
Sbjct:   129 ASITVVVGTTVNYFLDNGLNRADILFSGVGCFMVAVCLGSAVHSSNSADIKAKLGKLSGD 188

Query:   178 SKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSIL 237
              +     T  P  C+ L   G+++ E     +  +K G+A FL+ +EN+R+IKV GKS++
Sbjct:   189 CE-----TVTPEECQRL--FGVEEEEEEEKEMENVKEGSAAFLIALENKRAIKVLGKSMV 241

Query:   238 IGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNI 297
             +GL ITFFAG+ FSLFSP FNLATNDQWH LK+GVP LIVYTAFFYFS+S FVIA+ LNI
Sbjct:   242 VGLGITFFAGLSFSLFSPLFNLATNDQWHTLKQGVPKLIVYTAFFYFSLSCFVIAVALNI 301

Query:   298 RFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLXXXXXXXXXXXXXXXXXXL 357
              FL+ P+LD+ RSSF+ YL+DWNGRGWAL AGLLCGFGNGL                  L
Sbjct:   302 SFLYKPVLDSPRSSFREYLSDWNGRGWALAAGLLCGFGNGLQFMGGQAAGYAASDAVQAL 361

Query:   358 PLVSTFWGILLFGEYRKSSRRTYILLVSMLSMFIVAVAVLMASAGHRK 405
             PLVSTFWGI LFGEYR+SS RTY LLV ML MF VAV +LMASAG R+
Sbjct:   362 PLVSTFWGIYLFGEYRRSSTRTYALLVGMLVMFTVAVGLLMASAGERE 409

GO:0005739 "mitochondrion" evidence=ISM

GO:0005274 "allantoin uptake transmembrane transporter activity" evidence=IDA

GO:0015210 "uracil transmembrane transporter activity" evidence=IDA

GO:0015720 "allantoin transport" evidence=IGI

GO:0015857 "uracil transport" evidence=IGI

GO:0015931 "nucleobase-containing compound transport" evidence=IDA

GO:0042906 "xanthine transport" evidence=IGI

GO:0042907 "xanthine transmembrane transporter activity" evidence=IDA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2063851 UPS4 "ureide permease 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1204 (428.9 bits), Expect = 1.9e-122, P = 1.9e-122
 Identities = 245/408 (60%), Positives = 289/408 (70%)

Query:     1 MYMVESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTL 60
             MY+VESKAGAI CM+ SL  LG+WPAI+TLLERRGR PQHT+LD+   NLLAAI+IAF+L
Sbjct:     1 MYVVESKAGAIGCMILSLCCLGSWPAILTLLERRGRLPQHTFLDFATANLLAAIVIAFSL 60

Query:    61 GEFGDA---RPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLXXXXXXX 117
             GE G +   +P+F  QL +  DNWPSVL A+AGGV+LSIGNLATQYA+AFVGL       
Sbjct:    61 GEIGKSTFLKPDFTTQLPQ--DNWPSVLLAVAGGVLLSIGNLATQYAFAFVGLSVTEVIT 118

Query:   118 XXXXXXXXXXFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSXXXXXXXXXXXXPSD 177
                        NYFLD+KINKAEILFPG+ CFL+AV LG+AVH+S            PS+
Sbjct:   119 ASITVVIGTTLNYFLDNKINKAEILFPGVGCFLIAVFLGAAVHASNAADVKEKLKSLPSE 178

Query:   178 SKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSIL 237
                 +    I    E  PE    D E       K KAGTAGF VE+EN+R+IKVFGKSI+
Sbjct:   179 DLYSS----IENG-EDKPEIEKTDVESQEKLAEKAKAGTAGFYVELENKRAIKVFGKSIM 233

Query:   238 IGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNI 297
             IGL IT FAG+  SLFSPAFNLATNDQW  L KGVP L+VYTAFFYFS++GF+I+LILN+
Sbjct:   234 IGLFITLFAGISLSLFSPAFNLATNDQWSTLPKGVPKLVVYTAFFYFSIAGFLISLILNL 293

Query:   298 RFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLXXXXXXXXXXXXXXXXXXL 357
              FL+ P++   RSS K Y+ D  GRGWA+ AG LCGFGNGL                  L
Sbjct:   294 IFLYRPMVGLARSSLKKYIYDSKGRGWAVFAGFLCGFGNGLQFMGGQAAGYAAADSVQAL 353

Query:   358 PLVSTFWGILLFGEYRKSSRRTYILLVSMLSMFIVAVAVLMASAGHRK 405
             PLVSTFWGI+LFGEYRKSS+RTY LLVSML+MF+ AVA+LMAS+GHRK
Sbjct:   354 PLVSTFWGIVLFGEYRKSSKRTYALLVSMLAMFVAAVAILMASSGHRK 401


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.142   0.442    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      405       358   0.00081  117 3  11 22  0.44    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  621 (66 KB)
  Total size of DFA:  229 KB (2124 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.35u 0.09s 25.44t   Elapsed:  00:00:01
  Total cpu time:  25.35u 0.09s 25.44t   Elapsed:  00:00:01
  Start:  Sat May 11 06:02:42 2013   End:  Sat May 11 06:02:43 2013

GO:0009507 "chloroplast" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZPR7	UPS1_ARATH	No assigned EC number	0.7512	0.9604	0.9974	yes	no
Q41706	UPSA3_VIGUN	No assigned EC number	0.6588	0.9160	0.9867	N/A	no
Q9ZQ89	UPS2_ARATH	No assigned EC number	0.7205	0.9753	0.9924	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	405
pfam07168	336	pfam07168, Ureide_permease, Ureide permease	0.0
COG4975	288	COG4975, GlcU, Putative glucose uptake permease [C	5e-04

>gnl|CDD|191696 pfam07168, Ureide_permease, Ureide permease

 Score =  550 bits (1419), Expect = 0.0
 Identities = 251/345 (72%), Positives = 281/345 (81%), Gaps = 12/345 (3%)

Query: 14  MLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDA---RPNF 70
           M+ SL FLGTWPA++TLLERRGR PQHTYLDY++TNLLAA +IAFT GE G      PNF
Sbjct: 1   MVLSLLFLGTWPALLTLLERRGRLPQHTYLDYSVTNLLAAAVIAFTFGEIGKTSPGMPNF 60

Query: 71  VYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNY 130
             QLT+  DNWPSVLFAMAGG+VLSIGNLA+QYAWAFVGLSVTEVI++SITVVIG+T NY
Sbjct: 61  FTQLTQ--DNWPSVLFAMAGGIVLSIGNLASQYAWAFVGLSVTEVITASITVVIGTTLNY 118

Query: 131 FLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSDSKPGTRATFIPTS 190
           FLDD+IN+AEILFPG+ACFL+AV LGSAVHSSNAADNK KLN   +     + ++     
Sbjct: 119 FLDDRINRAEILFPGVACFLIAVFLGSAVHSSNAADNKEKLNAFENYQSEFSISSL---- 174

Query: 191 CETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIGLAITFFAGVCF 250
            E +     +D E G       KAGTA FLVE+E RR+IKVFGKS  IGL IT FAG+CF
Sbjct: 175 -ELMSRMNSEDLENGEAD--DAKAGTAEFLVELEKRRAIKVFGKSTWIGLGITLFAGICF 231

Query: 251 SLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRS 310
           SLFSPAFNLATNDQWH L+KGVPHL VYTAFFYFS+S FVIA+ILNIRFL+ P+L   RS
Sbjct: 232 SLFSPAFNLATNDQWHTLRKGVPHLTVYTAFFYFSISCFVIAIILNIRFLYRPVLGLPRS 291

Query: 311 SFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQ 355
           S KAYL DWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQ
Sbjct: 292 SLKAYLGDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQ 336

Heterocyclic nitrogen compounds may serve as nitrogen sources or nitrogen transport compounds in plants that are not able to fix nitrogen. This family represents ureide permease, a transporter of a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine; it has 10 putative transmembrane domains with a large cytosolic central domain containing a 'Walker A' motif. Ureide permease is likely to transport other purine degradation products when nitrogen sources are low. Transport is dependent on glucose and a proton gradient. The family is found in bacteria, plants and yeast. Length = 336

>gnl|CDD|227309 COG4975, GlcU, Putative glucose uptake permease [Carbohydrate transport and metabolism]

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 38/177 (21%), Positives = 68/177 (38%), Gaps = 35/177 (19%)

Query: 236 ILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFY---------FSV 286
           I+IG+ +T              N    +    LKKG+  L++ T   Y         F V
Sbjct: 127 IVIGIYLTSKQ---------DRNNKEEENPSNLKKGIVILLIST-LGYVGYVVLFQLFDV 176

Query: 287 SGFVIALILNIRFLFSPILDTHRSSFK-----AYLNDWNGRGWALLAGLLCGFGNGLQFM 341
            G    L   I  +   ++       K      +LN        ++ GL+   GN    +
Sbjct: 177 DGLSAILPQAIGMVIGALILGFFKMEKRFNKYTWLN--------IIPGLIWAIGNLFMLL 228

Query: 342 GGQAAGYAAADAV-QALPLVSTFWGILLFGEYRKSSRRTYILLVSMLSMFIVAVAVL 397
             Q  G A + ++ Q   ++ST  GIL  GE  K +++  + ++  + + +V   +L
Sbjct: 229 AAQKVGVATSFSLSQLGVIISTIGGILFLGE--KKTKKEMVYVIIGIILIVVGAILL 283

Length = 288

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	405
PF07168	336	Ureide_permease: Ureide permease; InterPro: IPR009	100.0
PRK13499	345	rhamnose-proton symporter; Provisional	100.0
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	99.9
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.82
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	99.26
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	98.9
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	98.47
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	97.74
PRK13499	345	rhamnose-proton symporter; Provisional	97.66
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	97.43
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	97.14
PRK15430	296	putative chloramphenical resistance permease RarD;	96.5
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	96.04
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	96.03
PRK10532	293	threonine and homoserine efflux system; Provisiona	95.57
PRK11689	295	aromatic amino acid exporter; Provisional	95.5
COG0697	292	RhaT Permeases of the drug/metabolite transporter	93.85
PRK11272	292	putative DMT superfamily transporter inner membran	92.58
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	92.38
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	90.14
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	88.75
PRK15430	296	putative chloramphenical resistance permease RarD;	88.46
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	88.35
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	87.14
PF13536	113	EmrE: Multidrug resistance efflux transporter	85.02
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	80.96

>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine

Probab=100.00  E-value=2.6e-142  Score=1037.86  Aligned_cols=333  Identities=66%  Similarity=1.094  Sum_probs=314.3

Q ss_pred             HHHHHHhhcChHHHHHhhhhcCCCCcceehhHHHHHHHHHHHHHHhhcccC---CCCcchhhhhhhccCCchhHHHHHHh
Q 015514           14 MLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFG---DARPNFVYQLTELKDNWPSVLFAMAG   90 (405)
Q Consensus        14 m~~sllclGSWp~~~kL~errgR~~qhtY~DYsig~lL~All~A~TlGsiG---~~~~~Fl~qL~Q~~~~~~sv~~AmaG   90 (405)
                      |++||+|||||||+|||+|||||+||||||||+|||+|+|+++|||+||+|   +++|||++||+|  |||||+++||+|
T Consensus         1 M~itmlcwGSW~nt~kL~~r~gR~~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q--~n~~sv~~A~aG   78 (336)
T PF07168_consen    1 MVITMLCWGSWPNTQKLAERRGRLPQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQ--ANWPSVLFAMAG   78 (336)
T ss_pred             CeeehhhhcChHHHHHHHHhcCCccceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhc--CChHHHHHHHHh
Confidence            789999999999999999999999999999999999999999999999999   567999999999  999999999999


Q ss_pred             hHHHhhhHHHHHHHHHHhccceeeeecceeEEEEcceeeecccCCCCceeeecchhHHHHHHHHHhhhhhccchhchHHh
Q 015514           91 GVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAK  170 (405)
Q Consensus        91 Gvv~nlgNl~lq~a~a~aGlSVa~pi~~slavViGt~~NYfld~~~n~a~iLF~GV~cflvAi~l~a~ah~sna~d~~~K  170 (405)
                      ||+||+|||++|||||++||||||||++|||||+||++|||+|||+|||+||||||+||+||||+++++|+||++|||+|
T Consensus        79 GvvfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYfld~~~n~a~iLF~GV~cf~iAI~lga~ah~sn~~d~~~k  158 (336)
T PF07168_consen   79 GVVFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYFLDPKINRAEILFPGVACFLIAIILGAAAHKSNAADNKAK  158 (336)
T ss_pred             hHhhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeeeccCCCCCceEEEccHHHHHHHHHHHHHHHhcchhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCCCCCCCccccCCccCCCCCCCCCCCCCCCCcccccccccchhhHhhhhhcchhcccccccchhhHHHHHHHHH
Q 015514          171 LNNLPSDSKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIGLAITFFAGVCF  250 (405)
Q Consensus       171 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gta~~l~~le~~rsikv~~~~~~~Gl~i~~~AGv~~  250 (405)
                      +++++++++..+.++.     +...+.++||+|+++  .+|+|+|||+||+|||+||||||+||++++|+.|+++||+|+
T Consensus       159 l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~--~~~~~~gta~~l~~le~~rsikv~g~~~~~Gl~i~~faG~c~  231 (336)
T PF07168_consen  159 LKNFPNSYSRSTVSSA-----EMGFELESKDLENGE--AEKAKAGTAEFLIELENKRSIKVFGSSTLIGLGIAFFAGLCF  231 (336)
T ss_pred             hhcCCCcccccccccc-----ccccccCccchhcCC--cccccccHHHHHHHHHhhhhhhhccccceeeehHHHHHhHHH
Confidence            9876554433333221     222223666777665  789999999999999999999999999999999999999999


Q ss_pred             hhhhhhHHhhccccccccCCCCCceeeehhhhHHHHHHHHHHHHHHHHHhcCCCCCCCccchhhhhccCCcchhHHhhhH
Q 015514          251 SLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWALLAGL  330 (405)
Q Consensus       251 s~Fsp~~n~A~ndq~~~l~~gvp~Lt~YTA~F~Fsvg~f~~~~i~N~~~m~~P~~g~p~ss~~aY~~d~~gr~~a~LaG~  330 (405)
                      |+|||+||+|||||||||+||||||+|||||||||++||++++++|++|||||++|.||||+++|++||+||.|++|||+
T Consensus       232 slFSPafNlAtNDqwhtL~~gvP~L~VYtafFyFs~s~fv~~~~lni~~Ly~P~~g~p~Ssl~ay~~D~~gR~wa~lAG~  311 (336)
T PF07168_consen  232 SLFSPAFNLATNDQWHTLKPGVPHLVVYTAFFYFSLSCFVVAIILNIWFLYRPVLGVPKSSLKAYLKDWNGRGWAFLAGL  311 (336)
T ss_pred             HhcCchhhccccccccccCCCCCceEEEeehHHHHHHHHHHHHHHHhhheeccccCCChhhHHHHhhccCCccHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhchhhhhhhcccchhhHHhhhhh
Q 015514          331 LCGFGNGLQFMGGQAAGYAAADAVQ  355 (405)
Q Consensus       331 icg~Gn~lqfmggqaAGyA~s~avQ  355 (405)
                      +||+||+||||||||||||+||+||
T Consensus       312 lCg~GNglQFmgGQAaGYAaADaVQ  336 (336)
T PF07168_consen  312 LCGFGNGLQFMGGQAAGYAAADAVQ  336 (336)
T ss_pred             HHhCCceeeecccchhhhhhhhhcC
Confidence            9999999999999999999999999

Transport is dependent on glucose and a proton gradient [].

>PRK13499 rhamnose-proton symporter; Provisional

Probab=100.00  E-value=1.8e-46  Score=371.79  Aligned_cols=318  Identities=15%  Similarity=0.151  Sum_probs=277.3

Q ss_pred             cchhhHHHHHHHHHHhhcChHHHHHhhhhcCCCCcceehhHHHHHHHHHHHHHHhhcccCCCCcchhhhhhhccCCchhH
Q 015514            5 ESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSV   84 (405)
Q Consensus         5 es~~~AI~~m~~sllclGSWp~~~kL~errgR~~qhtY~DYsig~lL~All~A~TlGsiG~~~~~Fl~qL~Q~~~~~~sv   84 (405)
                      ++....+.+|+++++|||||.+.+|. -|+|| .|.| || +.++ +..+++++|+|+++.  |+|.++++|  .+...+
T Consensus         3 ~~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~-wE~~-W~-v~gi-~~wl~~~~~~g~~~~--~~f~~~~~~--~~~~~~   73 (345)
T PRK13499          3 NAIILGIIWHLIGGASSGSFYAPFKK-VKKWS-WETM-WS-VGGI-FSWLILPWLIAALLL--PDFWAYYSS--FSGSTL   73 (345)
T ss_pred             chhHHHHHHHHHHHHHhhcccccccc-cCCCc-hhHH-HH-HHHH-HHHHHHHHHHHHHHh--hhHHHHHHh--cCHHHH
Confidence            35667899999999999999999999 77899 7888 99 5555 999999999999998  999999999  999999


Q ss_pred             HHHHHhhHHHhhhHHHHHHHHHHhccceeeeecceeEEEEccee---------eecccCCCCceeeecchhHHHHHHHHH
Q 015514           85 LFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTF---------NYFLDDKINKAEILFPGIACFLVAVGL  155 (405)
Q Consensus        85 ~~AmaGGvv~nlgNl~lq~a~a~aGlSVa~pi~~slavViGt~~---------NYfld~~~n~a~iLF~GV~cflvAi~l  155 (405)
                      .+++++|+++++||+..-.++.+.|+|+++||+.|+++|+||.+         ||+..+++   .+++.||++++++|++
T Consensus        74 ~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g---~~~~~gv~liliGi~l  150 (345)
T PRK13499         74 LPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGG---RMTLLGVLVALIGVAI  150 (345)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchH---HHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999         99999988   4599999999999999


Q ss_pred             hhhhhccchhchHHhhcCCCCCCCCCCCccccCCccCCCCCCCCCCCCCCCCcccccccccchhhHhhhhhcchhccccc
Q 015514          156 GSAVHSSNAADNKAKLNNLPSDSKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKS  235 (405)
Q Consensus       156 ~a~ah~sna~d~~~Kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gta~~l~~le~~rsikv~~~~  235 (405)
                      .+.|+        .|.++  + .                     +++|                    |+       +++
T Consensus       151 ~s~Ag--------~~k~~--~-~---------------------~~~~--------------------~~-------~~~  171 (345)
T PRK13499        151 VGRAG--------QLKER--K-M---------------------GIKK--------------------AE-------EFN  171 (345)
T ss_pred             HHHhh--------hhccc--c-c---------------------cccc--------------------cc-------ccc
Confidence            99999        23321  0 0                     0000                    00       235


Q ss_pred             ccchhhHHHHHHHHHhhhhhhHHhhccccccccCCCCCceeeehhhhHHH---HHHHHHHHHHHHHHhcCCCCCCCccch
Q 015514          236 ILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFS---VSGFVIALILNIRFLFSPILDTHRSSF  312 (405)
Q Consensus       236 ~~~Gl~i~~~AGv~~s~Fsp~~n~A~ndq~~~l~~gvp~Lt~YTA~F~Fs---vg~f~~~~i~N~~~m~~P~~g~p~ss~  312 (405)
                      ..||+++++++|+.++.|+++++.++..+..  .|..+..++|+++.-+.   +|.|++|+++|++.|+|   + ++.+.
T Consensus       172 ~~KGi~ialisgi~~~~f~~~~~~~~~~~~~--a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k---~-~~~~~  245 (345)
T PRK13499        172 LKKGLILAVMSGIFSACFSFAMDAGKPMHEA--AAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAK---N-KDLSL  245 (345)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhhccchhhh--hhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh---C-CCccc
Confidence            7899999999999999999999999863322  35567788999999999   99999999999999998   3 33566


Q ss_pred             hhhhcc-----CCcchhHHhhhHHHhchhhhhhhcccch---hhHHhhh-hhhhh-HHHHHHHHhhhhhccCCCcchhHH
Q 015514          313 KAYLND-----WNGRGWALLAGLLCGFGNGLQFMGGQAA---GYAAADA-VQALP-LVSTFWGILLFGEYRKSSRRTYIL  382 (405)
Q Consensus       313 ~aY~~d-----~~gr~~a~LaG~icg~Gn~lqfmggqaA---GyA~s~a-vQa~p-lVst~WGv~lf~Efr~ss~~t~~L  382 (405)
                      .+|.+.     ++.|+.++|+|++|++||-+.+|+.+++   +.++||. .|+++ ++|++||+ +|||+|++|||+.++
T Consensus       246 ~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~  324 (345)
T PRK13499        246 KADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRV  324 (345)
T ss_pred             chhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhH
Confidence            677775     5799999999999999999999999877   6777887 77777 99999999 599999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 015514          383 LVSMLSMFIVAVAVLMAS  400 (405)
Q Consensus       383 L~~Ml~~Fi~gv~ll~as  400 (405)
                      +..|++++++|..++...
T Consensus       325 l~~G~vliI~g~~lig~~  342 (345)
T PRK13499        325 LSLGCVVIILAANIVGLG  342 (345)
T ss_pred             HHHHHHHHHHHHHHHhhc
Confidence            999999999999998754

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=99.90  E-value=1.5e-23  Score=202.83  Aligned_cols=247  Identities=22%  Similarity=0.294  Sum_probs=186.9

Q ss_pred             CcceehhHHHHHHHHHHHHHHhhcccCCCCcchhhhhhhccCCchhHHHHHHhhHHHhhhHHHHHHHHHHhccceeeeec
Q 015514           38 PQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVIS  117 (405)
Q Consensus        38 ~qhtY~DYsig~lL~All~A~TlGsiG~~~~~Fl~qL~Q~~~~~~sv~~AmaGGvv~nlgNl~lq~a~a~aGlSVa~pi~  117 (405)
                      |..-=+--++|.+++|++..+...      |.+-       .|..+++.++++|+.+++||+....+....|+|.|+|++
T Consensus        12 ~~~Q~lG~t~Gali~alv~~~~~~------p~~~-------~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiS   78 (269)
T PF06800_consen   12 PANQILGTTIGALIFALVVFLFRQ------PAFS-------MSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPIS   78 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhC------CCcc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccc
Confidence            454455566777777777665421      1110       234799999999999999999999999999999999999


Q ss_pred             ceeEEEEcceeee--cccCCCCc-eeeecchhHHHHHHHHHhhhhhccchhchHHhhcCCCCCCCCCCCccccCCccCCC
Q 015514          118 SSITVVIGSTFNY--FLDDKINK-AEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSDSKPGTRATFIPTSCETL  194 (405)
Q Consensus       118 ~slavViGt~~NY--fld~~~n~-a~iLF~GV~cflvAi~l~a~ah~sna~d~~~Kl~~~~~~~~~~~~~~~~~~~~~~~  194 (405)
                      .++.+|..+.+++  |.+-+..+ ..+.+.++.++++.+++.+...         |.++    +                
T Consensus        79 tg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~---------~~~~----~----------------  129 (269)
T PF06800_consen   79 TGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQD---------KKSD----K----------------  129 (269)
T ss_pred             hhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcccc---------cccc----c----------------
Confidence            9999999999886  56665533 2334667777777777775522         1100    0                


Q ss_pred             CCCCCCCCCCCCCcccccccccchhhHhhhhhcchhcccccccchhhHHHHHHHHHhhhhhhHHhhccccccccCCCCCc
Q 015514          195 PENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPH  274 (405)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~gta~~l~~le~~rsikv~~~~~~~Gl~i~~~AGv~~s~Fsp~~n~A~ndq~~~l~~gvp~  274 (405)
                            +++                             .++..||+...+++.+-+ .+|+.+..+            .|
T Consensus       130 ------~~~-----------------------------~~~~~kgi~~Ll~stigy-~~Y~~~~~~------------~~  161 (269)
T PF06800_consen  130 ------SSS-----------------------------KSNMKKGILALLISTIGY-WIYSVIPKA------------FH  161 (269)
T ss_pred             ------ccc-----------------------------ccchhhHHHHHHHHHHHH-HHHHHHHHh------------cC
Confidence                  000                             224578888877776665 567777665            45


Q ss_pred             eeeehhhhHHHHHHHHHHHHHHHHHhcCCCCCCCccchhhhhccCCcchhHHhhhHHHhchhhhhhhcccchhhHHhhh-
Q 015514          275 LIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADA-  353 (405)
Q Consensus       275 Lt~YTA~F~Fsvg~f~~~~i~N~~~m~~P~~g~p~ss~~aY~~d~~gr~~a~LaG~icg~Gn~lqfmggqaAGyA~s~a-  353 (405)
                      .++|+++|=.|+|.++.++++|... ++|.-.             +-+...+++|++|++||-+.+++.+..|+|+||. 
T Consensus       162 ~~~~~~~lPqaiGm~i~a~i~~~~~-~~~~~~-------------k~~~~nil~G~~w~ignl~~~is~~~~G~a~af~l  227 (269)
T PF06800_consen  162 VSGWSAFLPQAIGMLIGAFIFNLFS-KKPFFE-------------KKSWKNILTGLIWGIGNLFYLISAQKNGVATAFTL  227 (269)
T ss_pred             CChhHhHHHHHHHHHHHHHHHhhcc-cccccc-------------cchHHhhHHHHHHHHHHHHHHHhHHhccchhhhhH
Confidence            6799999999999999999999987 444322             1355689999999999999999999999999998 


Q ss_pred             hhhhhHHHHHHHHhhhhhccCCCcchhHHHHHHHH
Q 015514          354 VQALPLVSTFWGILLFGEYRKSSRRTYILLVSMLS  388 (405)
Q Consensus       354 vQa~plVst~WGv~lf~Efr~ss~~t~~LL~~Ml~  388 (405)
                      .|...+|||+||+++|||.|+.....+.+++.+++
T Consensus       228 SQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Li  262 (269)
T PF06800_consen  228 SQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILI  262 (269)
T ss_pred             HhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHH
Confidence            89999999999999999998776666777665554

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.82  E-value=3.4e-20  Score=177.49  Aligned_cols=265  Identities=18%  Similarity=0.244  Sum_probs=195.7

Q ss_pred             HHHHHHHHHHhhcChHHHHHhhhhcCCCCcceehhHHHHHHHHHHHHHHhhcccCCCCcchhhhhhhccCCchhHHHHHH
Q 015514           10 AIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMA   89 (405)
Q Consensus        10 AI~~m~~sllclGSWp~~~kL~errgR~~qhtY~DYsig~lL~All~A~TlGsiG~~~~~Fl~qL~Q~~~~~~sv~~Ama   89 (405)
                      .+.+++++++||||++...|...  +..+++.. +-+++.++..++.+++-    .  |.      .  +++..+.++++
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~-~~~~g~l~~~~~~~~~~----~--~~------~--~~~~~~~~g~l   64 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL-GTTFGALILSIAIAIFV----L--PE------F--WALSIFLVGLL   64 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH-HHHHHHHHHHHHHHHHh----C--Cc------c--cccHHHHHHHH
Confidence            47899999999999999999877  45466664 67778888777777631    1  11      1  44678899999


Q ss_pred             hhHHHhhhHHHHHHHHHHhccceeeeecceeEEEEcceeeecc--cCCC-CceeeecchhHHHHHHHHHhhhhhccchhc
Q 015514           90 GGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFL--DDKI-NKAEILFPGIACFLVAVGLGSAVHSSNAAD  166 (405)
Q Consensus        90 GGvv~nlgNl~lq~a~a~aGlSVa~pi~~slavViGt~~NYfl--d~~~-n~a~iLF~GV~cflvAi~l~a~ah~sna~d  166 (405)
                      +|+.+++||++...|+...|+|+|+|+..++..++++...++.  +.+. .+..+...|+.+.++.+++-+..+      
T Consensus        65 ~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~------  138 (290)
T TIGR00776        65 SGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK------  138 (290)
T ss_pred             HHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc------
Confidence            9999999999999999999999999999999999898888763  2222 123344566667667666643211      


Q ss_pred             hHHhhcCCCCCCCCCCCccccCCccCCCCCCCCCCCCCCCCcccccccccchhhHhhhhhcchhcccccccchhhHHHHH
Q 015514          167 NKAKLNNLPSDSKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIGLAITFFA  246 (405)
Q Consensus       167 ~~~Kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gta~~l~~le~~rsikv~~~~~~~Gl~i~~~A  246 (405)
                          .    + +                    .+|.+                             .++..||+..++++
T Consensus       139 ----~----~-~--------------------~~~~~-----------------------------~~~~~~Gi~~~l~s  160 (290)
T TIGR00776       139 ----D----K-S--------------------AGIKS-----------------------------EFNFKKGILLLLMS  160 (290)
T ss_pred             ----c----c-c--------------------ccccc-----------------------------ccchhhHHHHHHHH
Confidence                0    0 0                    00000                             01346899999999


Q ss_pred             HHHHhhhhhhHHhhccccccccCCCCCceeeehhhhHHHHHHHHHHHHHHHHHhcCCCCCCCccchhhhhccCCcchhHH
Q 015514          247 GVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWAL  326 (405)
Q Consensus       247 Gv~~s~Fsp~~n~A~ndq~~~l~~gvp~Lt~YTA~F~Fsvg~f~~~~i~N~~~m~~P~~g~p~ss~~aY~~d~~gr~~a~  326 (405)
                      |+++++..-..+..             +.+|++..|...++.++.+.++|....++    .|.       . .+.-...+
T Consensus       161 g~~y~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~~-------~-~~~~~~~~  215 (290)
T TIGR00776       161 TIGYLVYVVVAKAF-------------GVDGLSVLLPQAIGMVIGGIIFNLGHILA----KPL-------K-KYAILLNI  215 (290)
T ss_pred             HHHHHHHHHHHHHc-------------CCCcceehhHHHHHHHHHHHHHHHHHhcc----cch-------H-HHHHHHHH
Confidence            99997766554422             14689999999999999999999766211    121       1 11222367


Q ss_pred             hhhHHHhchhhhhhhccc-chhhHHhhh-hhhhhHHHHHHHHhhhhhccCCCcchh
Q 015514          327 LAGLLCGFGNGLQFMGGQ-AAGYAAADA-VQALPLVSTFWGILLFGEYRKSSRRTY  380 (405)
Q Consensus       327 LaG~icg~Gn~lqfmggq-aAGyA~s~a-vQa~plVst~WGv~lf~Efr~ss~~t~  380 (405)
                      +.|++|++++.+.+++.+ ..|++.++- .|.-|++|++|++++|||-++......
T Consensus       216 ~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~  271 (290)
T TIGR00776       216 LPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIA  271 (290)
T ss_pred             HHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeeh
Confidence            799999999999999998 999999997 899999999999999999887655433

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=99.26  E-value=1.4e-10  Score=116.43  Aligned_cols=313  Identities=20%  Similarity=0.302  Sum_probs=202.1

Q ss_pred             chhhHHHHHHHHHHhhcChHHHHHhhhhcCCCCcceehhHH-HHHHHHHHHHHHhhcccCCCCcchhhhhhhccCCchhH
Q 015514            6 SKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYT-MTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSV   84 (405)
Q Consensus         6 s~~~AI~~m~~sllclGSWp~~~kL~errgR~~qhtY~DYs-ig~lL~All~A~TlGsiG~~~~~Fl~qL~Q~~~~~~sv   84 (405)
                      +.-..|++.++.=+|-||.-.=+|-. |+|. -|-+..=.. ++-+++-.+.|+..      .|+|.+=++|  .+.+.+
T Consensus         4 ~ii~Gii~h~iGg~~~~sfy~P~kkv-k~Ws-WEs~Wlv~gi~swli~P~~~a~l~------ip~~~~i~~~--~~~~~l   73 (344)
T PF06379_consen    4 AIILGIIFHAIGGFASGSFYVPFKKV-KGWS-WESYWLVQGIFSWLIVPWLWALLA------IPDFFSIYSA--TPASTL   73 (344)
T ss_pred             hHHHHHHHHHHHHHHhhhhccchhhc-CCcc-HHHHHHHHHHHHHHHHHHHHHHHh------CCcHHHHHHh--CChhHH
Confidence            34467888888899999988877753 3355 344433322 23344444444432      5899999999  888899


Q ss_pred             HHHHHhhHHHhhhHHHHHHHHHHhccceeeeecceeEEEEcceeeecccCC------CCceeeecchhHHHHHHHHHhhh
Q 015514           85 LFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFLDDK------INKAEILFPGIACFLVAVGLGSA  158 (405)
Q Consensus        85 ~~AmaGGvv~nlgNl~lq~a~a~aGlSVa~pi~~slavViGt~~NYfld~~------~n~a~iLF~GV~cflvAi~l~a~  158 (405)
                      +..++=|+..-+|++.---++-+.|+|.+..|..|++.++||.+==+.+++      .+.-.++..||+..++.|.+.+.
T Consensus        74 ~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~  153 (344)
T PF06379_consen   74 FWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGK  153 (344)
T ss_pred             HHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhH
Confidence            999999999999999999999999999999999999999999984443322      22335788899999999999988


Q ss_pred             hhccchhchHHhhcCCCCCCCCCCCccccCCccCCCCCCCCCCCCCCCCcccccccccchhhHhhhhhcchhcccccccc
Q 015514          159 VHSSNAADNKAKLNNLPSDSKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILI  238 (405)
Q Consensus       159 ah~sna~d~~~Kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gta~~l~~le~~rsikv~~~~~~~  238 (405)
                      |-.       .|-++.+.                        +.                     |        +.+-.|
T Consensus       154 AG~-------~Ke~~~~~------------------------~~---------------------~--------efn~~k  173 (344)
T PF06379_consen  154 AGS-------MKEKELGE------------------------EA---------------------K--------EFNFKK  173 (344)
T ss_pred             HHH-------hhhhhhcc------------------------ch---------------------h--------hhhhhh
Confidence            762       11110000                        00                     0        224579


Q ss_pred             hhhHHHHHHHHHhhhhhhHHhhccccccccCCCCCcee-eehhhhHHHHHHHHHHHHHHHHHhcCCCCCCCccchhhhhc
Q 015514          239 GLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLI-VYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLN  317 (405)
Q Consensus       239 Gl~i~~~AGv~~s~Fsp~~n~A~ndq~~~l~~gvp~Lt-~YTA~F~Fsvg~f~~~~i~N~~~m~~P~~g~p~ss~~aY~~  317 (405)
                      ||+|++++|++=+.|+=..+.+..-.-...+.|++.+- -=-.++.--.|-|+.|++.=.+.+.+   . +.-|.++|++
T Consensus       174 Gl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN~~yc~~~l~~---~-k~~s~~~d~~  249 (344)
T PF06379_consen  174 GLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFITNLIYCLILLAK---N-KNWSWKGDYS  249 (344)
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHHHHHHHHHHHhh---c-CCCccccccc
Confidence            99999999987666654443332211122233333321 11133444457777777655444332   1 1234555543


Q ss_pred             cC-----CcchhHHhhhHHH-----hchhhhhhhcccchhhHHhhh-hhh-hhHHHHHHHHhhhhhccCCCcchhHHHHH
Q 015514          318 DW-----NGRGWALLAGLLC-----GFGNGLQFMGGQAAGYAAADA-VQA-LPLVSTFWGILLFGEYRKSSRRTYILLVS  385 (405)
Q Consensus       318 d~-----~gr~~a~LaG~ic-----g~Gn~lqfmggqaAGyA~s~a-vQa-~plVst~WGv~lf~Efr~ss~~t~~LL~~  385 (405)
                      ..     +.-.++.|+|.+|     ..|+|=++|+.+  +.+.|.. -++ .-++|.+||+ +.||.|++||||.+.|..
T Consensus       250 ~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~--~~~~sW~i~ma~~vl~snvwGl-~lkEWKg~s~kt~~vl~~  326 (344)
T PF06379_consen  250 VAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGAS--GPFSSWAIHMALIVLFSNVWGL-ILKEWKGASKKTIRVLVL  326 (344)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--cccHHHHHHHHHHHHHHHHHHH-HHHHhccCCcccHHHHHH
Confidence            22     2557888999999     456777777744  4455555 343 3467999996 579999999999776654


Q ss_pred             HHHHHHHHHH
Q 015514          386 MLSMFIVAVA  395 (405)
Q Consensus       386 Ml~~Fi~gv~  395 (405)
                      =+..-|+++.
T Consensus       327 G~~vlI~s~~  336 (344)
T PF06379_consen  327 GIAVLILSVV  336 (344)
T ss_pred             HHHHHHHHHH
Confidence            4444444433

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=98.90  E-value=2e-10  Score=111.82  Aligned_cols=276  Identities=20%  Similarity=0.293  Sum_probs=187.3

Q ss_pred             HHHHHHHHHhhcChHHHHHhhhhcCCCCcceehhHHHHHHHHHHHHHHhhcccCCCCcchhhhhhhccCCchhHHHHHHh
Q 015514           11 IVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMAG   90 (405)
Q Consensus        11 I~~m~~sllclGSWp~~~kL~errgR~~qhtY~DYsig~lL~All~A~TlGsiG~~~~~Fl~qL~Q~~~~~~sv~~AmaG   90 (405)
                      +..-++-++.|||-|-+   +.++|-.|+|--+--++|-+++|++..+..-               +.-++.++++++.+
T Consensus         4 ~liaL~P~l~WGsip~v---~~k~GG~p~qQ~lGtT~GALifaiiv~~~~~---------------p~~T~~~~iv~~is   65 (288)
T COG4975           4 LLIALLPALGWGSIPLV---ANKFGGKPYQQTLGTTLGALIFAIIVFLFVS---------------PELTLTIFIVGFIS   65 (288)
T ss_pred             HHHHHHHHHHhccccee---eeecCCChhHhhhhccHHHHHHHHHHheeec---------------CccchhhHHHHHHh
Confidence            45567788999998865   4455555888888889999999988877621               12567799999999


Q ss_pred             hHHHhhhHHHHHHHHHHhccceeeeecceeEEEEcceeeecccCCCCce---eeecchhHHHHHHHHHhhhhhccchhch
Q 015514           91 GVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFLDDKINKA---EILFPGIACFLVAVGLGSAVHSSNAADN  167 (405)
Q Consensus        91 Gvv~nlgNl~lq~a~a~aGlSVa~pi~~slavViGt~~NYfld~~~n~a---~iLF~GV~cflvAi~l~a~ah~sna~d~  167 (405)
                      |...++|-+.-==|+.+.|.|.|.|++.+.=+|.++..--|.=..=.++   .+=|..++++++.+.+.+.-.     + 
T Consensus        66 G~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~-----~-  139 (288)
T COG4975          66 GAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQD-----R-  139 (288)
T ss_pred             hhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeec-----c-
Confidence            9999999999999999999999999999999998877665532211111   122233333333333332200     0 


Q ss_pred             HHhhcCCCCCCCCCCCccccCCccCCCCCCCCCCCCCCCCcccccccccchhhHhhhhhcchhcccccccchhhHHHHHH
Q 015514          168 KAKLNNLPSDSKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIGLAITFFAG  247 (405)
Q Consensus       168 ~~Kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gta~~l~~le~~rsikv~~~~~~~Gl~i~~~AG  247 (405)
                              +                      +||+||                            .++-.||+.+-+++ 
T Consensus       140 --------~----------------------nk~~~~----------------------------~~n~kkgi~~L~iS-  160 (288)
T COG4975         140 --------N----------------------NKEEEN----------------------------PSNLKKGIVILLIS-  160 (288)
T ss_pred             --------c----------------------cccccC----------------------------hHhhhhheeeeeee-
Confidence                    0                      111111                            22345666654433 


Q ss_pred             HHHhhhhhhHHhhccccccccCCCCCceeeehhhhHHHHHHHHHHHHHHHHHhcCCCCCCCccchhhhhccCCcchhHHh
Q 015514          248 VCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWALL  327 (405)
Q Consensus       248 v~~s~Fsp~~n~A~ndq~~~l~~gvp~Lt~YTA~F~Fsvg~f~~~~i~N~~~m~~P~~g~p~ss~~aY~~d~~gr~~a~L  327 (405)
                         ++.|-...... +.+.        -...+|.+--|+|-.+++++++..=|      ++++.=..|+        -++
T Consensus       161 ---t~GYv~yvvl~-~~f~--------v~g~saiLPqAiGMv~~ali~~~~~~------~~~~~K~t~~--------nii  214 (288)
T COG4975         161 ---TLGYVGYVVLF-QLFD--------VDGLSAILPQAIGMVIGALILGFFKM------EKRFNKYTWL--------NII  214 (288)
T ss_pred             ---ccceeeeEeee-cccc--------ccchhhhhHHHHHHHHHHHHHhhccc------ccchHHHHHH--------HHh
Confidence               23333332221 2222        23567888889999999999886544      2322222333        578


Q ss_pred             hhHHHhchhhhhhhcccchhhHHhhh-hhhhhHHHHHHHHhhhhhccCCCcchhHHHHHHHHHHHHHHHHH
Q 015514          328 AGLLCGFGNGLQFMGGQAAGYAAADA-VQALPLVSTFWGILLFGEYRKSSRRTYILLVSMLSMFIVAVAVL  397 (405)
Q Consensus       328 aG~icg~Gn~lqfmggqaAGyA~s~a-vQa~plVst~WGv~lf~Efr~ss~~t~~LL~~Ml~~Fi~gv~ll  397 (405)
                      -|++|++||-+-|++.|++|-|.|.. .|.--+|||+=||+++||=|....-++...+  .+++++|..++
T Consensus       215 ~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iG--iilivvgai~l  283 (288)
T COG4975         215 PGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIG--IILIVVGAILL  283 (288)
T ss_pred             hHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhh--HHHHHHHhhhh
Confidence            99999999999999999999999998 8999999999999999997766555555543  44556665554

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=98.47  E-value=1.9e-07  Score=90.60  Aligned_cols=130  Identities=20%  Similarity=0.275  Sum_probs=102.5

Q ss_pred             HHHHHHHHHhhcChHHHHHhhhhcCCCCcceehhHHHHHHHHHHHHHHhhcccCCCCcchhhhhhhccCCchhHHHHHHh
Q 015514           11 IVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMAG   90 (405)
Q Consensus        11 I~~m~~sllclGSWp~~~kL~errgR~~qhtY~DYsig~lL~All~A~TlGsiG~~~~~Fl~qL~Q~~~~~~sv~~AmaG   90 (405)
                      +++|++|.++.||=-.=.|-.+. +- +-.+-|=-++++++.++++.+..+.     |             +-.-+||+|
T Consensus         2 ~~a~~va~~~fGs~~vPvK~~~~-gD-g~~fQw~~~~~i~~~g~~v~~~~~~-----p-------------~f~p~amlg   61 (254)
T PF07857_consen    2 YIACIVAVLFFGSNFVPVKKFDT-GD-GFFFQWVMCSGIFLVGLVVNLILGF-----P-------------PFYPWAMLG   61 (254)
T ss_pred             chhHHHHHHHhcccceeeEeccC-CC-cHHHHHHHHHHHHHHHHHHHHhcCC-----C-------------cceeHHHhh
Confidence            46899999999998877776554 33 5677788899999999999887543     2             234589999


Q ss_pred             hHHHhhhHHHHHHHHHHhccceeeeecceeEEEEcceee---ecc-cC-CCCceeeecchhHHHHHHHHHhhhhh
Q 015514           91 GVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFN---YFL-DD-KINKAEILFPGIACFLVAVGLGSAVH  160 (405)
Q Consensus        91 Gvv~nlgNl~lq~a~a~aGlSVa~pi~~slavViGt~~N---Yfl-d~-~~n~a~iLF~GV~cflvAi~l~a~ah  160 (405)
                      |.++..||++..-.+--+||+++..+=.+..++.|=..-   .|. ++ ...+|.+=..|++|.++...+=+.+-
T Consensus        62 G~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik  136 (254)
T PF07857_consen   62 GALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIK  136 (254)
T ss_pred             hhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeec
Confidence            999999999999999999999999999888888775433   342 22 33466677889999999888777765

The region concerned is approximately 280 residues long.

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=97.74  E-value=0.00015  Score=70.10  Aligned_cols=112  Identities=15%  Similarity=0.202  Sum_probs=78.2

Q ss_pred             hhhHHHHHHHHHhhhhhhHHhhccccccccCCCCCceeeehhhhHHHHHHHHHHHHHHHHHhcCCCCCCCccchhhhhcc
Q 015514          239 GLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLND  318 (405)
Q Consensus       239 Gl~i~~~AGv~~s~Fsp~~n~A~ndq~~~l~~gvp~Lt~YTA~F~Fsvg~f~~~~i~N~~~m~~P~~g~p~ss~~aY~~d  318 (405)
                      |+++++++.+|.|.++.......  +|.          +.-.. -..++.++...+.-.  .+.|     +      .++
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~--g~~----------~~~~~-~~~~g~l~~~~~~~~--~~~~-----~------~~~   55 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG--GGP----------YSQTL-GTTFGALILSIAIAI--FVLP-----E------FWA   55 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC--CCH----------HHHHH-HHHHHHHHHHHHHHH--HhCC-----c------ccc
Confidence            67899999999999999887653  233          11111 133344433333222  1223     1      122


Q ss_pred             CCcchhHHhhhHHHhchhhhhhhcccchhhHHhhh-hh-hhhHHHHHHHHhhhhhccCCC
Q 015514          319 WNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADA-VQ-ALPLVSTFWGILLFGEYRKSS  376 (405)
Q Consensus       319 ~~gr~~a~LaG~icg~Gn~lqfmggqaAGyA~s~a-vQ-a~plVst~WGv~lf~Efr~ss  376 (405)
                      +.--.+++++|++|+.||-++|.+=+..|.|.+.. .| ..++++++|++++|||.++..
T Consensus        56 ~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~  115 (290)
T TIGR00776        56 LSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSI  115 (290)
T ss_pred             cHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchH
Confidence            44667799999999999999999999999999987 57 556689999999999987443

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.66  E-value=0.00027  Score=71.70  Aligned_cols=143  Identities=17%  Similarity=0.275  Sum_probs=97.5

Q ss_pred             cccchhhHHHHHHHHHhhhhhhHHhhccccccccCCCCCceeeehhhhHHHHHHHHHHHHHHHHHhcCCCCCCCccchhh
Q 015514          235 SILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKA  314 (405)
Q Consensus       235 ~~~~Gl~i~~~AGv~~s~Fsp~~n~A~ndq~~~l~~gvp~Lt~YTA~F~Fsvg~f~~~~i~N~~~m~~P~~g~p~ss~~a  314 (405)
                      +...|++..+++++|.|.||=-+.+.-+=+|++              ||. ++.++ ..++..+.+-  ..+.|  ++.+
T Consensus         4 ~~~~G~~~~~i~~~~~GS~~~p~K~~k~w~wE~--------------~W~-v~gi~-~wl~~~~~~g--~~~~~--~f~~   63 (345)
T PRK13499          4 AIILGIIWHLIGGASSGSFYAPFKKVKKWSWET--------------MWS-VGGIF-SWLILPWLIA--ALLLP--DFWA   63 (345)
T ss_pred             hhHHHHHHHHHHHHHhhcccccccccCCCchhH--------------HHH-HHHHH-HHHHHHHHHH--HHHhh--hHHH
Confidence            467899999999999999998888854446662              366 44443 3333333222  12333  6777


Q ss_pred             hhccCC--cchhHHhhhHHHhchhhhhhhcccchhhHHhhh-hhhhh-HHHHHHHHhhhhhcc---CCCcchhHHHHHHH
Q 015514          315 YLNDWN--GRGWALLAGLLCGFGNGLQFMGGQAAGYAAADA-VQALP-LVSTFWGILLFGEYR---KSSRRTYILLVSML  387 (405)
Q Consensus       315 Y~~d~~--gr~~a~LaG~icg~Gn~lqfmggqaAGyA~s~a-vQa~p-lVst~WGv~lf~Efr---~ss~~t~~LL~~Ml  387 (405)
                      |++..+  .-.+++++|++|++||-+|+.+=+..|-+.+-. .-|.. ++.|++++++++|+.   .++...-.+++  .
T Consensus        64 ~~~~~~~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~g--v  141 (345)
T PRK13499         64 YYSSFSGSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLG--V  141 (345)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHH--H
Confidence            777444  888999999999999999999877777776654 34443 468999999999998   66666553333  2


Q ss_pred             HHHHHHHHHHHH
Q 015514          388 SMFIVAVAVLMA  399 (405)
Q Consensus       388 ~~Fi~gv~ll~a  399 (405)
                      +.-++|+++...
T Consensus       142 ~liliGi~l~s~  153 (345)
T PRK13499        142 LVALIGVAIVGR  153 (345)
T ss_pred             HHHHHHHHHHHH
Confidence            333455555444

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=97.43  E-value=0.0012  Score=62.63  Aligned_cols=259  Identities=15%  Similarity=0.165  Sum_probs=143.1

Q ss_pred             HHHHHHHHHHhhcChHHHHHhhhhcCCCCcceehhHHHHHHHHHHHHHHhhcccCCCCcchhhhhhhccCCchhHHHHHH
Q 015514           10 AIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMA   89 (405)
Q Consensus        10 AI~~m~~sllclGSWp~~~kL~errgR~~qhtY~DYsig~lL~All~A~TlGsiG~~~~~Fl~qL~Q~~~~~~sv~~Ama   89 (405)
                      ++.+-+.+.+||-.|-...|-..++    ++...||.. .+.+.++..+.+-..  .++.+    +.  .++.......+
T Consensus         2 ~~~~~~~aa~~~a~~~~~~k~~~~~----~~~~~~~~~-~~~~~~l~~~~~~~~--~~~~~----~~--~~~~~~~~~~~   68 (281)
T TIGR03340         2 ALTLVVFSALMHAGWNLMAKSHADK----EPDFLWWAL-LAHSVLLTPYGLWYL--AQVGW----SR--LPATFWLLLAI   68 (281)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhcCCc----hhHHHHHHH-HHHHHHHHHHHHHhc--ccCCC----CC--cchhhHHHHHH
Confidence            5678899999999998888833332    233335544 221112222332111  01111    11  12223445667


Q ss_pred             hhHHHhhhHHHHHHHHHHhccceeeeecceeEEEEcceeee-cccCCCCceeeecchhHHHHHHHHHhhhhhccchhchH
Q 015514           90 GGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNY-FLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNK  168 (405)
Q Consensus        90 GGvv~nlgNl~lq~a~a~aGlSVa~pi~~slavViGt~~NY-fld~~~n~a~iLF~GV~cflvAi~l~a~ah~sna~d~~  168 (405)
                      +|+..-..+.+..+|......+++.|+...- -++-+.+-+ +.++|.++..++  |+++.++.+++-.. .        
T Consensus        69 ~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~-p~~~~l~~~~~~~e~~~~~~~~--g~~~~~~Gv~ll~~-~--------  136 (281)
T TIGR03340        69 SAVANMVYFLGLAQAYHHADVGLVYPLARSS-PLLVAIWATLTLGETLSPLAWL--GILIITLGLLVLGL-S--------  136 (281)
T ss_pred             HHHHHHHHHHHHHHHHhcCChhhhhhHHhhh-HHHHHHHHHHHHcCCCCHHHHH--HHHHHHHHHHHHhc-c--------
Confidence            7777788899999999999999988775433 223333333 355666555544  77766666654311 0        


Q ss_pred             HhhcCCCCCCCCCCCccccCCccCCCCCCCCCCCCCCCCcccccccccchhhHhhhhhcchhcccccccchhhHHHHHHH
Q 015514          169 AKLNNLPSDSKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIGLAITFFAGV  248 (405)
Q Consensus       169 ~Kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gta~~l~~le~~rsikv~~~~~~~Gl~i~~~AGv  248 (405)
                       +.      .                                                       +...+|+...+.+++
T Consensus       137 -~~------~-------------------------------------------------------~~~~~g~~~~l~aal  154 (281)
T TIGR03340       137 -RF------A-------------------------------------------------------QHRRKAYAWALAAAL  154 (281)
T ss_pred             -cc------c-------------------------------------------------------ccchhHHHHHHHHHH
Confidence             00      0                                                       011357777888888


Q ss_pred             HHhhhhhhHHhhccccccccCCCCCceeeehhhhHHHHHHHHHHHHHHHHHhcCCCCCCCccchhhhhccCCcchhHHhh
Q 015514          249 CFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWALLA  328 (405)
Q Consensus       249 ~~s~Fsp~~n~A~ndq~~~l~~gvp~Lt~YTA~F~Fsvg~f~~~~i~N~~~m~~P~~g~p~ss~~aY~~d~~gr~~a~La  328 (405)
                      |++..+= +.+-..       ++.++  .++..++..+++.+.+..+-.+.+.++  ..+   ...  .++..-.+..++
T Consensus       155 ~~a~~~i-~~k~~~-------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~--~~~~~~~~~~~~  217 (281)
T TIGR03340       155 GTAIYSL-SDKAAA-------LGVPA--FYSALGYLGIGFLAMGWPFLLLYLKRH--GRS---MFP--YARQILPSATLG  217 (281)
T ss_pred             HHHHhhh-hccccc-------cchhc--ccccHHHHHHHHHHHHHHHHHHHHHHh--ccc---hhh--hHHHHHHHHHHH
Confidence            8877553 222111       11221  133344444554444344333322211  001   000  111112335677


Q ss_pred             hHHHhchhhhhhhcccchhhHHhhh-hhhhhHHHHHHHHhhhhhc
Q 015514          329 GLLCGFGNGLQFMGGQAAGYAAADA-VQALPLVSTFWGILLFGEY  372 (405)
Q Consensus       329 G~icg~Gn~lqfmggqaAGyA~s~a-vQa~plVst~WGv~lf~Ef  372 (405)
                      ++..+++..+.+.+-+..|.+.+-. .+--|++++++|++++||=
T Consensus       218 ~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~  262 (281)
T TIGR03340       218 GLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNER  262 (281)
T ss_pred             HHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCC
Confidence            8888889999999888888766555 6888999999999999994

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=97.14  E-value=0.012  Score=54.03  Aligned_cols=237  Identities=15%  Similarity=0.101  Sum_probs=136.9

Q ss_pred             ChHHHHHhhhhcCCCCcceehhHHHHHHHHHHHHHHhhcccCCCCcchhhhhhhccCCchhHHHHHHhhHHHhhhHHHHH
Q 015514           23 TWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNLATQ  102 (405)
Q Consensus        23 SWp~~~kL~errgR~~qhtY~DYsig~lL~All~A~TlGsiG~~~~~Fl~qL~Q~~~~~~sv~~AmaGGvv~nlgNl~lq  102 (405)
                      +|.......+..-...+..++=+.++.++...+.-..            .+.+      +.......|++.+.+.+++.-
T Consensus         4 ~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~------------~~~~------~~~~~~~~~~~~~~l~~~~~~   65 (260)
T TIGR00950         4 TGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR------------PPLK------RLLRLLLLGALQIGVFYVLYF   65 (260)
T ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc------------cCHh------HHHHHHHHHHHHHHHHHHHHH
Confidence            4555554455544545556677777766655443221            1111      234567788888899999999


Q ss_pred             HHHHHhccceeeeecceeEEEEcceeeecccCCCCceeeecchhHHHHHHHHHhhhhhccchhchHHhhcCCCCCCCCCC
Q 015514          103 YAWAFVGLSVTEVISSSITVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSDSKPGT  182 (405)
Q Consensus       103 ~a~a~aGlSVa~pi~~slavViGt~~NYfld~~~n~a~iLF~GV~cflvAi~l~a~ah~sna~d~~~Kl~~~~~~~~~~~  182 (405)
                      +|....+.+.+-++...--+..-..-.-++.+|.++..+  .|+.+.++.+++-.  +.              + +    
T Consensus        66 ~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~--~gi~i~~~Gv~li~--~~--------------~-~----  122 (260)
T TIGR00950        66 VAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVL--LAAVLGLAGAVLLL--SD--------------G-N----  122 (260)
T ss_pred             HHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHH--HHHHHHHHhHHhhc--cC--------------C-c----
Confidence            999998888775554322222222223346677755444  36666666665531  20              0 0    


Q ss_pred             CccccCCccCCCCCCCCCCCCCCCCcccccccccchhhHhhhhhcchhcccccccchhhHHHHHHHHHhhhhhhHHhhcc
Q 015514          183 RATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIGLAITFFAGVCFSLFSPAFNLATN  262 (405)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gta~~l~~le~~rsikv~~~~~~~Gl~i~~~AGv~~s~Fsp~~n~A~n  262 (405)
                                                                        .+...+|..+++.+.++++...........
T Consensus       123 --------------------------------------------------~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~  152 (260)
T TIGR00950       123 --------------------------------------------------LSINPAGLLLGLGSGISFALGTVLYKRLVK  152 (260)
T ss_pred             --------------------------------------------------ccccHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence                                                              012358999999999999999988777652


Q ss_pred             ccccccCCCCCceeeehhhhHHHHHHHHHHHHHHHHHhcCCCCCCCccchhhhhccCCcchhHHhhhHHH-hchhhhhhh
Q 015514          263 DQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLC-GFGNGLQFM  341 (405)
Q Consensus       263 dq~~~l~~gvp~Lt~YTA~F~Fsvg~f~~~~i~N~~~m~~P~~g~p~ss~~aY~~d~~gr~~a~LaG~ic-g~Gn~lqfm  341 (405)
                      + -+     ++..+ +++ ..+.++..+.-..   .....+    ++ ..     ++....+-+.-|+++ +++..+.+.
T Consensus       153 ~-~~-----~~~~~-~~~-~~~~~~~~~l~~~---~~~~~~----~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  211 (260)
T TIGR00950       153 K-EG-----PELLQ-FTG-WVLLLGALLLLPF---AWFLGP----NP-QA-----LSLQWGALLYLGLIGTALAYFLWNK  211 (260)
T ss_pred             c-CC-----chHHH-HHH-HHHHHHHHHHHHH---HHhcCC----CC-Cc-----chHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1 11     11122 222 1122332222111   111221    11 11     222222234455555 578888888


Q ss_pred             cccchhhHHhhh-hhhhhHHHHHHHHhhhhh
Q 015514          342 GGQAAGYAAADA-VQALPLVSTFWGILLFGE  371 (405)
Q Consensus       342 ggqaAGyA~s~a-vQa~plVst~WGv~lf~E  371 (405)
                      +-+..+.+.+-. ...-|+++++++++++||
T Consensus       212 a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E  242 (260)
T TIGR00950       212 GLTLVDPSAASILALAEPLVALLLGLLILGE  242 (260)
T ss_pred             HHhcCCchHHHHHHHHHHHHHHHHHHHHhCC
Confidence            888888887776 678899999999999999

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=96.50  E-value=0.1  Score=50.33  Aligned_cols=138  Identities=10%  Similarity=0.047  Sum_probs=82.0

Q ss_pred             cchhhHHHHHHHHHHhhcChHHHHHhhhhcCCCCcceehhHHHHHHHHHHHHHHhhcccCCCCcchhhhhhhccCCchhH
Q 015514            5 ESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSV   84 (405)
Q Consensus         5 es~~~AI~~m~~sllclGSWp~~~kL~errgR~~qhtY~DYsig~lL~All~A~TlGsiG~~~~~Fl~qL~Q~~~~~~sv   84 (405)
                      +++.-++.+++++.++||+-+...|++++ -...|...+-+.++.++...+.... ++    .+.+.++  +  .++...
T Consensus         4 ~~~~~g~~~~l~a~~~wg~~~~~~k~~~~-~~~~~~~~~R~~~a~~~l~~~~~~~-~~----~~~~~~~--~--~~~~~~   73 (296)
T PRK15430          4 KQTRQGVLLALAAYFIWGIAPAYFKLIYY-VPADEILTHRVIWSFFFMVVLMSIC-RQ----WSYLKTL--I--QTPQKI   73 (296)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHH-cc----HHHHHHH--H--cCHHHH
Confidence            35566789999999999999999998764 3335777777777655443332222 21    1111111  1  355666


Q ss_pred             HHHHHhhHHHhhhHHHHHHHHHHhccceeeeecceeEEEEcceeeecccCCCCceeeecchhHHHHHHHH
Q 015514           85 LFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFLDDKINKAEILFPGIACFLVAVG  154 (405)
Q Consensus        85 ~~AmaGGvv~nlgNl~lq~a~a~aGlSVa~pi~~slavViGt~~NYfld~~~n~a~iLF~GV~cflvAi~  154 (405)
                      ....+|+....+.+.+.-+|+.....+.+-.+...--+..-..---|+..|.++..++  |+++-++.++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~--g~~l~~~Gv~  141 (296)
T PRK15430         74 FMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWL--AVILAICGVL  141 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHH--HHHHHHHHHH
Confidence            6667888888899999999998887777654432221111111112235566665554  4444444433

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=96.04  E-value=0.01  Score=58.70  Aligned_cols=75  Identities=24%  Similarity=0.376  Sum_probs=53.9

Q ss_pred             cchhHHhhhHHHhchhhhhhhcccchhhHHhhh-hhhhhHH-HHHHHHhhhhhccCCCcchhHHHHHHHHHHHHHHHHH
Q 015514          321 GRGWALLAGLLCGFGNGLQFMGGQAAGYAAADA-VQALPLV-STFWGILLFGEYRKSSRRTYILLVSMLSMFIVAVAVL  397 (405)
Q Consensus       321 gr~~a~LaG~icg~Gn~lqfmggqaAGyA~s~a-vQa~plV-st~WGv~lf~Efr~ss~~t~~LL~~Ml~~Fi~gv~ll  397 (405)
                      .-.+++++|+.|.+|+.+||.+=+..|-.-+-= .=|..|| .++||+++|+|.++...+.  +...-+++=++|+.+-
T Consensus        44 ~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~--~G~~Al~liiiGv~lt  120 (269)
T PF06800_consen   44 SFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKI--IGFLALVLIIIGVILT  120 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHH--HHHHHHHHHHHHHHHh
Confidence            345799999999999999999988888766553 3444555 7889999999999765543  3333344555555543

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=96.03  E-value=0.021  Score=55.97  Aligned_cols=82  Identities=21%  Similarity=0.207  Sum_probs=64.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCCCCCCCccchhhhhccCCcchhHHhhhHHHhchhhhhhhcccchhhHHhhhhhh--hh
Q 015514          281 FFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQA--LP  358 (405)
Q Consensus       281 ~F~Fsvg~f~~~~i~N~~~m~~P~~g~p~ss~~aY~~d~~gr~~a~LaG~icg~Gn~lqfmggqaAGyA~s~avQa--~p  358 (405)
                      -++.+.++|+.+++.|.+.      +.|+           =+.||+|||++|+.||.+..-.=+-+|-|.+...-+  --
T Consensus        31 Qw~~~~~i~~~g~~v~~~~------~~p~-----------f~p~amlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~   93 (254)
T PF07857_consen   31 QWVMCSGIFLVGLVVNLIL------GFPP-----------FYPWAMLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNC   93 (254)
T ss_pred             HHHHHHHHHHHHHHHHHhc------CCCc-----------ceeHHHhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHH
Confidence            3578999999999999874      2232           478999999999999999999989999999998443  44


Q ss_pred             HHHHHHHHh-hhhhccCCCcch
Q 015514          359 LVSTFWGIL-LFGEYRKSSRRT  379 (405)
Q Consensus       359 lVst~WGv~-lf~Efr~ss~~t  379 (405)
                      ++.=.||-| +|++-++.+++.
T Consensus        94 l~Gw~~grfGlFg~~~~~~~~~  115 (254)
T PF07857_consen   94 LTGWASGRFGLFGLDPQVPSSP  115 (254)
T ss_pred             HHHHHHhhceeccccccccchh
Confidence            566667767 677767766554

The region concerned is approximately 280 residues long.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=95.57  E-value=0.46  Score=45.74  Aligned_cols=93  Identities=17%  Similarity=0.086  Sum_probs=57.4

Q ss_pred             chhhHHHHHHHHHHhhcChHHHHHhhhhcCCCCcceehhHHHHHHHHHHHHHHhhcccCCCCcchhhhhhhccCCchhHH
Q 015514            6 SKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVL   85 (405)
Q Consensus         6 s~~~AI~~m~~sllclGSWp~~~kL~errgR~~qhtY~DYsig~lL~All~A~TlGsiG~~~~~Fl~qL~Q~~~~~~sv~   85 (405)
                      |+..++.+|+++++||++=....|.+-..-..++...+-|.++.++..++.    .   ...+.    ++.  .+|   .
T Consensus         9 ~~~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~----~---~~~~~----~~~--~~~---~   72 (293)
T PRK10532          9 PVWLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIF----K---PWRLR----FAK--EQR---L   72 (293)
T ss_pred             ccchHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH----h---HHhcc----CCH--HHH---H
Confidence            667899999999999998888888876665557777777777765543321    1   00111    111  222   2


Q ss_pred             HHHHhhHHHhhhHHHHHHHHHHhccceee
Q 015514           86 FAMAGGVVLSIGNLATQYAWAFVGLSVTE  114 (405)
Q Consensus        86 ~AmaGGvv~nlgNl~lq~a~a~aGlSVa~  114 (405)
                      ..+..|+...+.|.+..++....+.+++-
T Consensus        73 ~~~~~g~~~~~~~~~~~~al~~~~~~~a~  101 (293)
T PRK10532         73 PLLFYGVSLGGMNYLFYLSIQTVPLGIAV  101 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence            23334445566677777777766665543

>PRK11689 aromatic amino acid exporter; Provisional

Probab=95.50  E-value=0.33  Score=46.79  Aligned_cols=46  Identities=22%  Similarity=0.205  Sum_probs=36.2

Q ss_pred             hhhHHHhchhhhhhhcccchhhHHhhh-hhhhhHHHHHHHHhhhhhc
Q 015514          327 LAGLLCGFGNGLQFMGGQAAGYAAADA-VQALPLVSTFWGILLFGEY  372 (405)
Q Consensus       327 LaG~icg~Gn~lqfmggqaAGyA~s~a-vQa~plVst~WGv~lf~Ef  372 (405)
                      +.|+.-+++..+++.+=+..|...+-. .---|++++++|+++++|-
T Consensus       220 ~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~  266 (295)
T PRK11689        220 LAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTP  266 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCC
Confidence            445555667778888888888776555 6778999999999999994

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=93.85  E-value=2.7  Score=38.28  Aligned_cols=257  Identities=18%  Similarity=0.174  Sum_probs=134.3

Q ss_pred             hHHHHHHHHHHhhcChHHHHHhhhhcCCCCcceehhHHHHHHHHHHHHHHhhcccCCCCcchhhhhhhccCCchhHHHHH
Q 015514            9 GAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAM   88 (405)
Q Consensus         9 ~AI~~m~~sllclGSWp~~~kL~errgR~~qhtY~DYsig~lL~All~A~TlGsiG~~~~~Fl~qL~Q~~~~~~sv~~Am   88 (405)
                      ....++++.-+.||.+....|.....    +....=.....++.+.++.+.......      .+..+  ...+.....+
T Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~--~~~~~~~~~~   74 (292)
T COG0697           7 LGLLALLLWGLLWGLSFIALKLAVES----LDPFLFAAALRFLIAALLLLPLLLLEP------RGLRP--ALRPWLLLLL   74 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcc----cCChHHHHHHHHHHHHHHHHHHHHhhc------ccccc--cccchHHHHH
Confidence            44566667778999988888876554    111111222122222222222222211      00111  2223556777


Q ss_pred             HhhHHHhhhHHHHHHHHHHhccceeeeecceeEEEEcceeeecc-cCCCCceeeecchhHHHHHHHHHhhhhhccchhch
Q 015514           89 AGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFL-DDKINKAEILFPGIACFLVAVGLGSAVHSSNAADN  167 (405)
Q Consensus        89 aGGvv~nlgNl~lq~a~a~aGlSVa~pi~~slavViGt~~NYfl-d~~~n~a~iLF~GV~cflvAi~l~a~ah~sna~d~  167 (405)
                      .+++.+.+++.+.-+++...+.+.+.++....-+..-..-.++. .+|.++.+++-  +.+..+.+++-....       
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~--~~~~~~Gv~lv~~~~-------  145 (292)
T COG0697          75 LALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILG--ILLALAGVLLILLGG-------  145 (292)
T ss_pred             HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHH--HHHHHHhHHheecCC-------
Confidence            88888888888888888888888887666433322222111343 56665544432  444444444432211       


Q ss_pred             HHhhcCCCCCCCCCCCccccCCccCCCCCCCCCCCCCCCCcccccccccchhhHhhhhhcchhccccc-ccchhhHHHHH
Q 015514          168 KAKLNNLPSDSKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKS-ILIGLAITFFA  246 (405)
Q Consensus       168 ~~Kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gta~~l~~le~~rsikv~~~~-~~~Gl~i~~~A  246 (405)
                              + .                                                      +.. ...|....+.+
T Consensus       146 --------~-~------------------------------------------------------~~~~~~~g~~~~l~a  162 (292)
T COG0697         146 --------G-G------------------------------------------------------GGILSLLGLLLALAA  162 (292)
T ss_pred             --------C-c------------------------------------------------------chhHHHHHHHHHHHH
Confidence                    0 0                                                      000 36899999999


Q ss_pred             HHHHhhhhhhHHhhccccccccCCCCCceeeehhhhH-HHHHHHHHHHHHHHHHhcCCCCCCCccchhhhhccCCcchhH
Q 015514          247 GVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFY-FSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWA  325 (405)
Q Consensus       247 Gv~~s~Fsp~~n~A~ndq~~~l~~gvp~Lt~YTA~F~-Fsvg~f~~~~i~N~~~m~~P~~g~p~ss~~aY~~d~~gr~~a  325 (405)
                      +++.++.+-....-.            +..+.+..++ ...   ..........+.++-  .| .+.+++.       .-
T Consensus       163 ~~~~a~~~~~~~~~~------------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~-~~~~~~~-------~~  217 (292)
T COG0697         163 ALLWALYTALVKRLS------------RLGPVTLALLLQLL---LALLLLLLFFLSGFG--AP-ILSRAWL-------LL  217 (292)
T ss_pred             HHHHHHHHHHHHHhc------------CCChHHHHHHHHHH---HHHHHHHHHHhcccc--cc-CCHHHHH-------HH
Confidence            999984443332221            1112222221 111   222233333333221  12 3333333       23


Q ss_pred             HhhhHHHh-chhhhhhhcccchhhHHhhh-hhhhhHHHHHHHHhhhhhccC
Q 015514          326 LLAGLLCG-FGNGLQFMGGQAAGYAAADA-VQALPLVSTFWGILLFGEYRK  374 (405)
Q Consensus       326 ~LaG~icg-~Gn~lqfmggqaAGyA~s~a-vQa~plVst~WGv~lf~Efr~  374 (405)
                      .+.|++.. +|..+.+.+-+..+....-. ...-|+.+.+|++++++|--+
T Consensus       218 ~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~  268 (292)
T COG0697         218 LYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLS  268 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            45555555 57777777777666666554 467899999999999999543

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=92.58  E-value=3.6  Score=39.60  Aligned_cols=115  Identities=13%  Similarity=-0.004  Sum_probs=63.0

Q ss_pred             cchhhHHHHHHHHHhhhhhhHHhhccccccccCCCCCceeeehhhhHHHHHHHHHHHHHHHHHhcCCCCCCCccchhhhh
Q 015514          237 LIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYL  316 (405)
Q Consensus       237 ~~Gl~i~~~AGv~~s~Fsp~~n~A~ndq~~~l~~gvp~Lt~YTA~F~Fsvg~f~~~~i~N~~~m~~P~~g~p~ss~~aY~  316 (405)
                      ..|...++.+++|+++.+-...+..       ++. + .  -...+.+.++..+..+..  .....|..- . .+.++  
T Consensus       149 ~~G~l~~l~a~~~~a~~~~~~~~~~-------~~~-~-~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~-~~~~~--  211 (292)
T PRK11272        149 PWGAILILIASASWAFGSVWSSRLP-------LPV-G-M--MAGAAEMLAAGVVLLIAS--LLSGERLTA-L-PTLSG--  211 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcC-------CCc-c-h--HHHHHHHHHHHHHHHHHH--HHcCCcccc-c-CCHHH--
Confidence            4799999999999999887644432       111 1 1  111223333333322221  111111000 0 01111  


Q ss_pred             ccCCcchhHHhhhHHHhchhhhhhhcccchhhHHhhh-hhhhhHHHHHHHHhhhhhc
Q 015514          317 NDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADA-VQALPLVSTFWGILLFGEY  372 (405)
Q Consensus       317 ~d~~gr~~a~LaG~icg~Gn~lqfmggqaAGyA~s~a-vQa~plVst~WGv~lf~Ef  372 (405)
                          ...+..++.+--.++..+.+.+-+..+...+-. .---|+++++|+++++||=
T Consensus       212 ----~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~  264 (292)
T PRK11272        212 ----FLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGET  264 (292)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence                112233333333477778888878888776665 5677999999999999984

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=92.38  E-value=5.5  Score=38.45  Aligned_cols=38  Identities=13%  Similarity=0.071  Sum_probs=27.9

Q ss_pred             HHHHHHHHHhhcChHHHHHhhhhcCCCCcceehhHHHH
Q 015514           11 IVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMT   48 (405)
Q Consensus        11 I~~m~~sllclGSWp~~~kL~errgR~~qhtY~DYsig   48 (405)
                      ..+.+++.++||+.....|++-..--..+..-+-+.++
T Consensus         6 ~l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a   43 (299)
T PRK11453          6 GVLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLV   43 (299)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            35678899999999999998665544456666666654

>TIGR00688 rarD rarD protein

Probab=90.14  E-value=7.6  Score=36.30  Aligned_cols=115  Identities=19%  Similarity=0.154  Sum_probs=71.7

Q ss_pred             chhhHHHHHHHHHhhhhhhHHhhccccccccCCCCCceeeehhhhHHHHHHHHHHHHHHHHHhcCCCCCCCccchhhhhc
Q 015514          238 IGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLN  317 (405)
Q Consensus       238 ~Gl~i~~~AGv~~s~Fsp~~n~A~ndq~~~l~~gvp~Lt~YTA~F~Fsvg~f~~~~i~N~~~m~~P~~g~p~ss~~aY~~  317 (405)
                      ||+...++|.+++|.-.++.-.. . +          +.|++..|+=.+-..+.=.++...  ++.    . ...+..++
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~~-~-~----------~~~~~i~~~R~~~a~~~l~~~~~~--~~~----~-~~~~~~~~   62 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKLL-K-P----------LPATDILGHRMIWSFPFMLLSVTL--FRQ----W-AALIERLK   62 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHh-c-c----------CCHHHHHHHHHHHHHHHHHHHHHH--Hcc----h-HHHHHHHh
Confidence            68999999999999988887653 1 2          337777777665433222222211  211    1 11122222


Q ss_pred             cCC-c--chhHHhhhHHHhchhhhhhhcccchhhHHhhh-hhhhhHHHHHHHHhhhhh
Q 015514          318 DWN-G--RGWALLAGLLCGFGNGLQFMGGQAAGYAAADA-VQALPLVSTFWGILLFGE  371 (405)
Q Consensus       318 d~~-g--r~~a~LaG~icg~Gn~lqfmggqaAGyA~s~a-vQa~plVst~WGv~lf~E  371 (405)
                      .++ .  +..-.+.|+.-++.+.+.+.+=|....+.|-. .+..|+..++.+.+++||
T Consensus        63 ~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~E  120 (256)
T TIGR00688        63 RIQKRPLILSLLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKE  120 (256)
T ss_pred             CcccchHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            221 2  22345677776777777777767665565555 789999999999999987

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=88.75  E-value=0.14  Score=40.88  Aligned_cols=122  Identities=15%  Similarity=0.257  Sum_probs=77.0

Q ss_pred             HhhcChHHHHHhhhhcCCCCcceehhHHHHHHHHHHHHHHhhcccCCCCcchhhhhhhccCCchhHHHHHHhhHHHhhhH
Q 015514           19 FFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGN   98 (405)
Q Consensus        19 lclGSWp~~~kL~errgR~~qhtY~DYsig~lL~All~A~TlGsiG~~~~~Fl~qL~Q~~~~~~sv~~AmaGGvv~nlgN   98 (405)
                      +|||+.....|..-|+...++.+.+-+.++.. .. ++..-.++..      ..+.+.  .  ........|++...+++
T Consensus         1 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~------~~~~~~--~--~~~~~~~~~~~~~~~~~   68 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKISPLSITFWRFLIAGI-LL-ILLLILGRKP------FKNLSP--R--QWLWLLFLGLLGTALAY   68 (126)
T ss_pred             ceeeeHHHHHHHHhccCCHHHHHHHHHHHHHH-HH-HHHHhhcccc------ccCCCh--h--hhhhhhHhhccceehHH
Confidence            58999999999888877777888888888765 22 2333333222      111111  2  22334555666678999


Q ss_pred             HHHHHHHHHhccceeeeecceeEEEEcceeeecccC-CCCceeeecchhHHHHHHHHH
Q 015514           99 LATQYAWAFVGLSVTEVISSSITVVIGSTFNYFLDD-KINKAEILFPGIACFLVAVGL  155 (405)
Q Consensus        99 l~lq~a~a~aGlSVa~pi~~slavViGt~~NYfld~-~~n~a~iLF~GV~cflvAi~l  155 (405)
                      ++..++....+.+.+-++.. +..++...+-++.-+ +.+.  .-..|+.+.++++++
T Consensus        69 ~~~~~a~~~~~~~~~~~~~~-~~pv~~~i~~~~~~~e~~~~--~~~~g~~l~~~g~~l  123 (126)
T PF00892_consen   69 LLYFYALKYISASIVSILQY-LSPVFAAILGWLFLGERPSW--RQIIGIILIIIGVVL  123 (126)
T ss_pred             HHHHHHHHhcchhHHHHHHH-HHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHHHH
Confidence            99999999999988887765 445556666655433 3322  335566666666654

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=88.46  E-value=4.4  Score=39.18  Aligned_cols=117  Identities=15%  Similarity=0.114  Sum_probs=72.4

Q ss_pred             cccchhhHHHHHHHHHhhhhhhHHhhccccccccCCCCCceeeehhhhHHHHH-HHHHHHHHHHHHhcCCCCCCCccchh
Q 015514          235 SILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVS-GFVIALILNIRFLFSPILDTHRSSFK  313 (405)
Q Consensus       235 ~~~~Gl~i~~~AGv~~s~Fsp~~n~A~ndq~~~l~~gvp~Lt~YTA~F~Fsvg-~f~~~~i~N~~~m~~P~~g~p~ss~~  313 (405)
                      ++.||++..+.+.+++|.-+++.-. . ++       .|   |....++=.+. ..+...+   ...+++   .+  ..+
T Consensus         5 ~~~~g~~~~l~a~~~wg~~~~~~k~-~-~~-------~~---~~~~~~~R~~~a~~~l~~~---~~~~~~---~~--~~~   64 (296)
T PRK15430          5 QTRQGVLLALAAYFIWGIAPAYFKL-I-YY-------VP---ADEILTHRVIWSFFFMVVL---MSICRQ---WS--YLK   64 (296)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHH-h-cC-------CC---HHHHHHHHHHHHHHHHHHH---HHHHcc---HH--HHH
Confidence            4579999999999999998887743 3 22       12   33333332222 2212111   122222   11  122


Q ss_pred             hhhccCCcchhHHhhhHHHhchhhhhhhcccchhhHHhhh-hhhhhHHHHHHHHhhhhh
Q 015514          314 AYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADA-VQALPLVSTFWGILLFGE  371 (405)
Q Consensus       314 aY~~d~~gr~~a~LaG~icg~Gn~lqfmggqaAGyA~s~a-vQa~plVst~WGv~lf~E  371 (405)
                      .-.+++....+.+++++.-++.+.+.|.+=+....+.+-. ....|+..++.+.+++||
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E  123 (296)
T PRK15430         65 TLIQTPQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGE  123 (296)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            2223333333445677777778888888888888887776 678999999999999998

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=88.35  E-value=1.4  Score=35.21  Aligned_cols=49  Identities=22%  Similarity=0.289  Sum_probs=39.6

Q ss_pred             HHhhhHH-HhchhhhhhhcccchhhHHhhh-hhhhhHHHHHHHHhhhhhcc
Q 015514          325 ALLAGLL-CGFGNGLQFMGGQAAGYAAADA-VQALPLVSTFWGILLFGEYR  373 (405)
Q Consensus       325 a~LaG~i-cg~Gn~lqfmggqaAGyA~s~a-vQa~plVst~WGv~lf~Efr  373 (405)
                      -+.-|++ .++++.+.+.+=+..+.+.+.. .+-.|+++.+++++++||--
T Consensus        56 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~  106 (126)
T PF00892_consen   56 LLFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERP  106 (126)
T ss_pred             hhHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            3344445 5888889999988888888887 68889999999999998854

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>TIGR00688 rarD rarD protein

Probab=87.14  E-value=12  Score=35.11  Aligned_cols=131  Identities=12%  Similarity=0.126  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHhhcChHHHHHhhhhcCCCCcceehhHHHHHHHHHHHHHHhhcccCCCCcchhhhhhhccCCchhHHHHHH
Q 015514           10 AIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMA   89 (405)
Q Consensus        10 AI~~m~~sllclGSWp~~~kL~errgR~~qhtY~DYsig~lL~All~A~TlGsiG~~~~~Fl~qL~Q~~~~~~sv~~Ama   89 (405)
                      ++.+++++.+|||+-+-..|.++. -...|...+-+.++-++.-++..+ .++    .+...+.+++. ...+-......
T Consensus         3 g~~~~i~a~~~wg~~~~~~k~~~~-~~~~~i~~~R~~~a~~~l~~~~~~-~~~----~~~~~~~~~~~-~~~~~~~~~~~   75 (256)
T TIGR00688         3 GIIVSLLASFLFGYMYYYSKLLKP-LPATDILGHRMIWSFPFMLLSVTL-FRQ----WAALIERLKRI-QKRPLILSLLL   75 (256)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHHH-Hcc----hHHHHHHHhCc-ccchHHHHHHH
Confidence            578999999999999999998643 444567777777665443222222 232    11112222210 11122444566


Q ss_pred             hhHHHhhhHHHHHHHHHHhccceeeeecceeEEEEcceeee-cccCCCCceeeecchhHH
Q 015514           90 GGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNY-FLDDKINKAEILFPGIAC  148 (405)
Q Consensus        90 GGvv~nlgNl~lq~a~a~aGlSVa~pi~~slavViGt~~NY-fld~~~n~a~iLF~GV~c  148 (405)
                      .|+...+.+.+.-+|......+.+..+... +=+.-+.+.+ ++..|.++-.++-..++.
T Consensus        76 ~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~-~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~  134 (256)
T TIGR00688        76 CGLLIGFNWWLFIWAVNNGSSLEVSLGYLI-NPLVMVALGRVFLKERISRFQFIAVIIAT  134 (256)
T ss_pred             HHHHHHHHHHHHHHHHHcchHHHHHHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            677777888888888877666655544221 1111222222 345677776655444443

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=85.02  E-value=3.8  Score=34.23  Aligned_cols=62  Identities=29%  Similarity=0.290  Sum_probs=45.7

Q ss_pred             hhhhccCCcchhHHhhhHHHh-chhhhhhhcccchhhHHhhh-hhhhhHHHHHHHHhhhhhccCCCcc
Q 015514          313 KAYLNDWNGRGWALLAGLLCG-FGNGLQFMGGQAAGYAAADA-VQALPLVSTFWGILLFGEYRKSSRR  378 (405)
Q Consensus       313 ~aY~~d~~gr~~a~LaG~icg-~Gn~lqfmggqaAGyA~s~a-vQa~plVst~WGv~lf~Efr~ss~~  378 (405)
                      ...+++ +...|.++.|+++. .++.+.+.+-+-++ +.... .+-.|++.++=+.+++||  +-|+|
T Consensus        26 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~e--r~~~~   89 (113)
T PF13536_consen   26 FRALRR-KPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKE--RLSPR   89 (113)
T ss_pred             HHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcC--CCCHH
Confidence            334443 34557788899987 88888888877776 55555 788999999999999998  44444

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=80.96  E-value=13  Score=35.69  Aligned_cols=39  Identities=21%  Similarity=0.142  Sum_probs=29.9

Q ss_pred             chhhhhhhcccchhhHHhhh-hhhhhHHHHHHHHhhhhhc
Q 015514          334 FGNGLQFMGGQAAGYAAADA-VQALPLVSTFWGILLFGEY  372 (405)
Q Consensus       334 ~Gn~lqfmggqaAGyA~s~a-vQa~plVst~WGv~lf~Ef  372 (405)
                      +.|.++|.+=+..|+..+-. ...-|+++++.|+++++|-
T Consensus       233 ~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~  272 (302)
T TIGR00817       233 FYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTK  272 (302)
T ss_pred             HHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCC
Confidence            34556667767777766554 7888999999999999993

specificities overlap.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00