Citrus Sinensis ID: 015516

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-----
Protein Sequence
MLLYLIITCFSLILFLNCLALKPLPPWARPTELRLLSLCFWKEISFFSIPSSLKNSLNITTIIIPSPKLSFKHMMSTSNDHVEEVSGGAEMSVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLASRKDSTHLKQGKQRLWMKLFSFVRSFSWVRSKVHDTSKQTTTTRLPVDSNSIMSWYLALETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCLNDLHPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSETLILEFNQYTPGSRWRKTTINRKDHREEGNEADGFYGGIRKVNNEEEIKMWKRLWPVEVLE
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHccccccccccccccEEHHHHHHHHHHHHHcHHHHHHccccccccccccccccccccccccccHHHcccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHccccccccEEEEcccccEEEEEEEEcccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccEEEEEEEcccccccccEEEEEcccccccccccccccccccEEEEEEEccccccccEEEEcccccccccccccccccccccccccHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHcccccccEEccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHccccccccEcccccccccccccccccccccHHHHHHHHHHcccEEEEEEEEEcccccEEEEEEEEcEEEEEccccccEEEEccccccEEEEEEcccccHHcccccccccccHcccccHHHHcccccEEEEEEEccccccccEEEEEEcccccccccccccEcccccEEEEEEEcccccccEEEEEEEcccccccccccccccccHHHcccHHHHHHHHHcccHHHcc
Coil and Loop (DISEMBL)
MLLYLIITCFSLILFLnclalkplppwarpteLRLLSLCFWKeisffsipsslknslnittiiipspklsfkHMMSTSndhveevsggaemsvldLPELVLECILeklppsglcnMAAVCSSLRDRCMSDHLWEKHMKqkwgrivgpaAYREWQWHLasrkdsthlkqGKQRLWMKLFSFVRSFSWVrskvhdtskqttttrlpvdsnsIMSWYLALETgrfwfpaqvynrenghvGFMLSCYDAElsydqstdtfqarypphgrrpiaiecgvpwerlraapvdtsphdlhisdclndlhpgdhieiqwrrnkefpygwwyGVVGHlescdgnenfchchnsetlilefnqytpgsrwrkttinrkdhreegneadgfyggirkvnNEEEIKMWkrlwpvevle
Flexible Loop (DISEMBL)
MLLYLIITCFSLILFLNCLALKPLPPWARPTELRLLSLCFWKEISFFsipsslknslNITTIIIPSPKLSFKHMMSTSNDHVEEVSGGAEMSVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLasrkdsthlkqGKQRLWMKLFSFVRSFSwvrskvhdtskqttttrlpvdsnsIMSWYLALETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCLNDLHPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSETLIlefnqytpgsrwrkttinrkdhreegneadgfyggirkvnneeeikmwkrlwpvevle
Low Complexity Region (SEG)
MLLYLIITCFSLILFLNCLALKPLPPWARPTELRLLSLCFWKEISFFSIPSSLKNSLNITTIIIPSPKLSFKHMMSTSNDHVEEVSGGAEMSVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLASRKDSTHLKQGKQRLWMKLfsfvrsfswvrsKVHDTSKQTTTTRLPVDSNSIMSWYLALETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCLNDLHPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSETLILEFNQYTPGSRWRKTTINRKDHREEGNEADGFYGGIRKVNNEEEIKMWKRLWPVEVLE
Disordered region (IsUnstruct)
*LLYLIITCFSLILFLNCLALKPLPPWARPTELRLLSLCFWKEISFFSIPSSLKNSLNITTIIIPSPKLSF******************EMSVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLASRKDSTHLKQGKQRLWMKLFSFVRSFSWVRSKVHDT****TTTRLPVDSNSIMSWYLALETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCLNDLHPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSETLILEFNQYTPGSRWRKTTI*************GFYGGIRKVNNEEEIKMWKRLWPVE***
Disordered Region (DISOPRED)
MLLYLIITCFSLILFLNCLALKPLPPWARPTELRLLSLCFWKEISFFSIPSSLKNSLNITTIII****************************VLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWH*******************KLFSFVRSFSWVRS*****************SNSIMSWYLALETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCLNDLHPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSETLILEFNQYTPGSRWR**************EADGFYGGIRKVNNEEEIKMWKRLWPVEVLE
Disordered Region (DISEMBL)
MLLYLIITCFSLILFLNCLALKPLPPWARPTELRLLSLCFWKEISFFSIPSSLKNSLNITTIIIPSPKLSFKHMMSTSNDHVEEVSGGAEMSVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLASRKDSTHLKQGKQRLWMKLFSFVRSFSWVRSKVHDTSKQTTTTRLPVDSNSIMSWYLALETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCLNDLHPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSETLILEFNQYTPGSRWRKTTINRKDHREEGNEADGFYGGIRKVNNEEEIKMWKRLWPVEVLE
Disordered Region (DISPRO)
MLLYLIITCFSLILFLNCLALKPLPPWARPTELRLLSLCFWKEISFFSIPSSLKNSLNITTIIIPSPKLSFKHM****ND********AEMSVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLASRKDSTH******RLWMKLFSFVRSFSWVRSKVHDT****TTTRLPVDSNSIMSWYLALETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCLNDLHPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSETLILEFNQYTPGSRWRKTTINRKDH***GNEADGFYGGIRKVNNEEEIKMWKRLWPVE***
Transmembrane Helix (TMHMM)
iHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLYLIITCFSLILFLNCLALKPLPPWARPTELRLLSLCFWKEISFFSIPSSLKNSLNITTIIIPSPKLSFKHMMSTSNDHVEEVSGGAEMSVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLASRKDSTHLKQGKQRLWMKLFSFVRSFSWVRSKVHDTSKQTTTTRLPVDSNSIMSWYLALETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCLNDLHPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSETLILEFNQYTPGSRWRKTTINRKDHREEGNEADGFYGGIRKVNNEEEIKMWKRLWPVEVLE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	405	2.2.26 [Sep-21-2011]
Q8RY82	371	F-box protein At2g32560 O	yes	no	0.908	0.991	0.602	1e-134
Q6NLB1	371	F-box protein At2g26850 O	no	no	0.911	0.994	0.597	1e-130
Q6NKN8	371	F-box protein At2g41170 O	no	no	0.891	0.973	0.510	1e-100

>sp|Q8RY82|FB121_ARATH F-box protein At2g32560 OS=Arabidopsis thaliana GN=At2g32560 PE=2 SV=1

 Score =  477 bits (1228), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 246/408 (60%), Positives = 292/408 (71%), Gaps = 40/408 (9%)

Query: 1   MLLYLIITCFSLILFLNCLALKPLPPWARPTELRLLSLCFWKEISFFSIPSSLKNSLNIT 60
           MLLY +ITC S   F   L+L   PPWA  T+  L         SF+ I +   N+L+ T
Sbjct: 1   MLLYFLITCLSFFFFTKSLSL---PPWASETKTLL---------SFYFIKNPFMNTLHQT 48

Query: 61  TIIIPSPKLSFKHMMSTSNDHVEEVSGGAEMSVLDLPELVLECILEKLPPSGLCNMAAVC 120
                SP +                    +MSVLDLPEL L+CIL+ LPPSGLC+MA VC
Sbjct: 49  KHDPASPVID-------------------QMSVLDLPELALDCILDLLPPSGLCSMARVC 89

Query: 121 SSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLASRK---DSTHLKQGKQRLWMKL 177
           SSLR+RC+SDHLWEKH+K KWG+I+GPAA+REWQ +++S     DS H + G    + K+
Sbjct: 90  SSLRERCVSDHLWEKHLKTKWGKILGPAAHREWQCYISSSTYHLDSPHHQTGNLG-FAKI 148

Query: 178 FSFVRSFSWVRSKVHDTSKQTTTTRLPVDSNSIMSWYLALETGRFWFPAQVYNRENGHVG 237
            S +RS S V  +  D  ++   + LP+DS+  MS YL+LETGRFWFPAQVYNRENGHVG
Sbjct: 149 ISLIRSLSSVFRE--DKQRRGYASSLPLDSS--MSCYLSLETGRFWFPAQVYNRENGHVG 204

Query: 238 FMLSCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCL 297
           FMLSCYDAELSYD  TDTFQARYPPHGRR  AIE GV W+R+RAAP+D SPH LH+SD L
Sbjct: 205 FMLSCYDAELSYDTHTDTFQARYPPHGRRASAIEKGVTWDRIRAAPIDASPHLLHVSDSL 264

Query: 298 NDLHPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSETLILEFNQYTPGS 357
            +L PGDHIEIQWRRNKEFPYGWWYG+V HLESCDG+ N CHCH SET++LEFNQYT GS
Sbjct: 265 KELKPGDHIEIQWRRNKEFPYGWWYGLVRHLESCDGDHNHCHCHLSETVVLEFNQYTVGS 324

Query: 358 RWRKTTINRKDHREEGNEADGFYGGIRKVNNEEEIKMWKRLWPVEVLE 405
           RWR+T I R DH+EEGNE DGFYGGIRK+N +EEI MWKR WP  +LE
Sbjct: 325 RWRRTMIMR-DHKEEGNEEDGFYGGIRKLNCKEEIAMWKRHWPCSILE 371

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NLB1|FB118_ARATH F-box protein At2g26850 OS=Arabidopsis thaliana GN=At2g26850 PE=2 SV=1

 Score =  466 bits (1199), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 243/407 (59%), Positives = 291/407 (71%), Gaps = 38/407 (9%)

Query: 1   MLLYLIITCFSLILFLNCLALKPLPPWARPTELRLLSLCFWKEISFFSIPSSLKNSLNIT 60
           MLLYL+ITC S   F         P WA  T+  LLS  F K +          NSL+  
Sbjct: 1   MLLYLLITCLSFFFFS---KSLSFPQWASKTK-NLLSFYFSKYL--------FTNSLHQI 48

Query: 61  TIIIPSPKLSFKHMMSTSNDHVEEVSGGAEMSVLDLPELVLECILEKLPPSGLCNMAAVC 120
           T  + SP L                    +MS+LDLP+L L+CILE LPPS LC MA VC
Sbjct: 49  TPDLASPVL-------------------GKMSILDLPDLPLDCILELLPPSELCTMARVC 89

Query: 121 SSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLAS--RKDSTHLKQGKQRLWMKLF 178
           SSLR+RC+SDHLWEKH+K KWG+I+GP+A++EWQ +L+S    DS H K     L  K+ 
Sbjct: 90  SSLRERCVSDHLWEKHLKTKWGKILGPSAHKEWQCYLSSPYHLDSPHHKTSHLGL-AKII 148

Query: 179 SFVRSFSWVRSKVHDTSKQTTTTRLPVDSNSIMSWYLALETGRFWFPAQVYNRENGHVGF 238
           S +RS S +     D  ++   + +P+DS   M++YL+LETGRFWFPAQVYNRENGHVGF
Sbjct: 149 SLMRSLSSIFRD--DDHRRRYPSSIPLDST--MNFYLSLETGRFWFPAQVYNRENGHVGF 204

Query: 239 MLSCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCLN 298
           MLSCYDAELSYD  T+TFQARYPPHG+R IA+E  V WER+RAAPVD SPH+L++SD LN
Sbjct: 205 MLSCYDAELSYDTDTNTFQARYPPHGKRAIAVEKDVTWERIRAAPVDASPHNLYVSDSLN 264

Query: 299 DLHPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSETLILEFNQYTPGSR 358
           +L PGDHIEIQWRRNKEFPYGWWY VVGH+ESCDGN N C CHNSE ++LEFNQYT GSR
Sbjct: 265 ELKPGDHIEIQWRRNKEFPYGWWYSVVGHMESCDGNLNHCQCHNSEMMVLEFNQYTVGSR 324

Query: 359 WRKTTINRKDHREEGNEADGFYGGIRKVNNEEEIKMWKRLWPVEVLE 405
           WRKT INR+DHRE+GNE DGFYGGIRK+N +E+I+MWKRLWP  +LE
Sbjct: 325 WRKTMINRRDHREKGNEEDGFYGGIRKINCKEDIEMWKRLWPSSILE 371

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NKN8|FB132_ARATH F-box protein At2g41170 OS=Arabidopsis thaliana GN=At2g41170 PE=2 SV=1

 Score =  364 bits (935), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/378 (51%), Positives = 248/378 (65%), Gaps = 17/378 (4%)

Query: 33  LRLLSLCFWKEISFFSIPSSLKNSLNITTIIIPSPKLSFKHMMSTSNDHVEEVSGGAEMS 92
           L  +S CF   I  F I S L  S+    I   + +   K       D         +MS
Sbjct: 6   LTFISFCFSITICGFLIVSWLARSIIRNGIRTLTWRKETKRKKKNQEDE-------NKMS 58

Query: 93  VLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWGRIVGPAAYRE 152
           +LDLP+L L+CILEKL PS LC M +VCS LRD+C+SDHLWEKHM+ KWGR++G AA +E
Sbjct: 59  LLDLPDLTLDCILEKLSPSELCAMTSVCSELRDKCVSDHLWEKHMETKWGRLMGDAAIQE 118

Query: 153 WQWHLASRKDSTHLKQGKQRL----WMKLF-SFVRSFSWVRSKVHDTSKQTTTTRLPVDS 207
           W+ H+A+            R     W   F + ++ F+W+ S     ++ +++   P+D 
Sbjct: 119 WKSHVATIMRCLTSSSSSSRKSKPNWSSRFVANLKPFAWLSSNHGCENRGSSSYLAPID- 177

Query: 208 NSIMSWYLALETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDQSTDTFQARYPPHGRRP 267
            S+M WY  LE G+FWFPAQVYNRENGHVGFM+SCYDA++ YD  TDTFQARY  HGRR 
Sbjct: 178 -SVMYWYSNLENGKFWFPAQVYNRENGHVGFMMSCYDAKIRYDFKTDTFQARYSAHGRR- 235

Query: 268 IAIECGVPWERLRAAPVDTSPHDLHISDCLNDLHPGDHIEIQWRRNKEFPYGWWYGVVGH 327
            A E  V W+RLR +  DT   DLH+SDCL+ L PGDH EIQWRR KEFPYGWW+G+VGH
Sbjct: 236 -AAEEKVTWQRLRPSQDDTKSRDLHVSDCLHGLRPGDHFEIQWRRTKEFPYGWWFGIVGH 294

Query: 328 LESCDGNENFCHCHNSETLILEFNQYTPGSRWRKTTINRKDHREEGNEADGFYGGIRKVN 387
           L++CDG +N C C + E +++EF Q+ P S WR+T I RKDHRE GNE +GFYGG++K+ 
Sbjct: 295 LQNCDGVQN-CRCDSDENVVMEFRQFRPESPWRRTVIKRKDHRETGNEENGFYGGVKKLG 353

Query: 388 NEEEIKMWKRLWPVEVLE 405
            EEEI  WK+LWP + LE
Sbjct: 354 TEEEISTWKQLWPSQALE 371

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	405
449444853	396	PREDICTED: F-box protein At2g32560-like	0.977	1.0	0.701	1e-163
225435860	396	PREDICTED: F-box protein At2g32560-like	0.975	0.997	0.691	1e-162
296083888	375	unnamed protein product [Vitis vinifera]	0.923	0.997	0.671	1e-158
224106001	405	predicted protein [Populus trichocarpa]	0.990	0.990	0.699	1e-158
449444855	368	PREDICTED: F-box protein At2g32560-like	0.908	1.0	0.669	1e-154
255585161	408	conserved hypothetical protein [Ricinus	0.943	0.936	0.696	1e-154
356501388	397	PREDICTED: F-box protein At2g32560-like	0.977	0.997	0.645	1e-152
224055285	368	f-box family protein [Populus trichocarp	0.908	1.0	0.674	1e-150
356554183	397	PREDICTED: F-box protein At2g32560-like	0.980	1.0	0.659	1e-149
356577644	399	PREDICTED: F-box protein At2g32560-like	0.985	1.0	0.646	1e-144

>gi|449444853|ref|XP_004140188.1| PREDICTED: F-box protein At2g32560-like isoform 1 [Cucumis sativus]

 Score =  580 bits (1495), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 284/405 (70%), Positives = 326/405 (80%), Gaps = 9/405 (2%)

Query: 1   MLLYLIITCFSLILFLNCLALKPLPPWARPTELRLLSLCFWKEISFFSIPSSLKNSLNIT 60
           MLL   +TC S ILFL  L+LKPLP WA   E+R LS  FWKE+SFF I   +KNSL   
Sbjct: 1   MLLCFFLTCISFILFLKSLSLKPLPLWA--DEMRFLSHWFWKELSFFPIYKVIKNSLCTY 58

Query: 61  TIIIPSPKLSFKHMMSTSNDHVEEVSGGAEMSVLDLPELVLECILEKLPPSGLCNMAAVC 120
           T  I S K+SFK    +  ++VEE     EMSVLDLPEL LECILEKLPP  LC+MA VC
Sbjct: 59  TFCISS-KMSFKKKYLSKVENVEE---SGEMSVLDLPELALECILEKLPPDALCSMAGVC 114

Query: 121 SSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLASRKDSTHLKQGKQRLWMKLFSF 180
           SSLR+RC+SDHLWEKHMK+KWG+++G AAYREWQWHLASR   ++LKQ KQ+  ++LFSF
Sbjct: 115 SSLRERCISDHLWEKHMKRKWGKVIGQAAYREWQWHLASRAGESNLKQNKQKSLIRLFSF 174

Query: 181 VRSFSWVRSKVHDTSKQTTTTRLPVDSNSIMSWYLALETGRFWFPAQVYNRENGHVGFML 240
             S SW+RSKV++ S  T  T LPVDS  IM+WYLALETGRFWFPAQVYNRENGHVGFML
Sbjct: 175 GWSLSWIRSKVNENS-NTPRTFLPVDS--IMAWYLALETGRFWFPAQVYNRENGHVGFML 231

Query: 241 SCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCLNDL 300
           SCYDAEL YD  TDTFQARYPPHGRR IAIE GV WERLR+ P+DT PHDLH+SDCLN+L
Sbjct: 232 SCYDAELCYDLRTDTFQARYPPHGRRAIAIENGVQWERLRSPPIDTPPHDLHVSDCLNEL 291

Query: 301 HPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSETLILEFNQYTPGSRWR 360
            PGDHIEIQWR+NK+FPYGWWYGVVGHLE+CDG+ N C CH S+T++LEFNQYTPGSRWR
Sbjct: 292 WPGDHIEIQWRKNKDFPYGWWYGVVGHLETCDGDANHCSCHYSDTVVLEFNQYTPGSRWR 351

Query: 361 KTTINRKDHREEGNEADGFYGGIRKVNNEEEIKMWKRLWPVEVLE 405
              I+RKDHREEGNE DGFYGGIRK+ + EEI MWK+LWP ++LE
Sbjct: 352 LAIIDRKDHREEGNEVDGFYGGIRKLYSNEEISMWKQLWPTDILE 396

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435860|ref|XP_002263423.1| PREDICTED: F-box protein At2g32560-like [Vitis vinifera]

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 280/405 (69%), Positives = 331/405 (81%), Gaps = 10/405 (2%)

Query: 2   LLYLIITCFSLILFLNCLALKPLPPWARPTELRLLS-LCFWKEISFFSIPSSLKNSLNIT 60
           +L+ +ITCFS  L  +  +++PLP W   +E+RL S L FWKE+SFF+I  S+KNSL   
Sbjct: 1   MLFFLITCFSFFLLSHSFSIRPLPSWV--SEIRLSSSLWFWKELSFFTIYRSIKNSLFGG 58

Query: 61  TIIIPSPKLSFKHMMSTSNDHVEEVSGGAEMSVLDLPELVLECILEKLPPSGLCNMAAVC 120
              IPS K+SF     T    VE V  G EM +LDLPELVLECILE+LPP GLC++  VC
Sbjct: 59  FWGIPS-KMSFTE--KTPLHKVENVEVGLEMGLLDLPELVLECILERLPPEGLCSLGGVC 115

Query: 121 SSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLASRKDSTHLKQGKQRLWMKLFSF 180
           SSLRDRCMSD+ W++HMK+KWGRI+G AAYREWQWH+ASRKDS  L+QGK    M+L S 
Sbjct: 116 SSLRDRCMSDYFWKRHMKEKWGRILGRAAYREWQWHMASRKDSDTLEQGKPNGLMRLLSR 175

Query: 181 VRSFSWVRSKVHDTSKQTTTTRLPVDSNSIMSWYLALETGRFWFPAQVYNRENGHVGFML 240
               SW+RS++ +++ Q ++  +PVDS  IMSWYLALETGRFWFPAQVYNRE+GHVGFML
Sbjct: 176 FGPLSWIRSRLSNSTPQRSS--VPVDS--IMSWYLALETGRFWFPAQVYNRESGHVGFML 231

Query: 241 SCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCLNDL 300
           SCYDAELSYD  TDTFQARYPPHGRR +AIE GV W+RLRA PV+T PHDLH+SDCLN+L
Sbjct: 232 SCYDAELSYDSHTDTFQARYPPHGRRTVAIENGVSWDRLRAPPVETPPHDLHMSDCLNEL 291

Query: 301 HPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSETLILEFNQYTPGSRWR 360
           HPGDHIEIQWRRNKEFPYGWWYG+VGHLESCDGNE++C CHNSET++LEFNQYTPGSRWR
Sbjct: 292 HPGDHIEIQWRRNKEFPYGWWYGIVGHLESCDGNESYCRCHNSETVVLEFNQYTPGSRWR 351

Query: 361 KTTINRKDHREEGNEADGFYGGIRKVNNEEEIKMWKRLWPVEVLE 405
           +T+INRKDHREEGNEADGFYGGIRK+   +EI +WK+LWP EVLE
Sbjct: 352 RTSINRKDHREEGNEADGFYGGIRKLCRNDEISVWKQLWPAEVLE 396

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083888|emb|CBI24276.3| unnamed protein product [Vitis vinifera]

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 272/405 (67%), Positives = 322/405 (79%), Gaps = 31/405 (7%)

Query: 2   LLYLIITCFSLILFLNCLALKPLPPWARPTELRLLS-LCFWKEISFFSIPSSLKNSLNIT 60
           +L+ +ITCFS  L  +  +++PLP W   +E+RL S L FWKE+SFF+I  S+KNSL   
Sbjct: 1   MLFFLITCFSFFLLSHSFSIRPLPSWV--SEIRLSSSLWFWKELSFFTIYRSIKNSL--- 55

Query: 61  TIIIPSPKLSFKHMMSTSNDHVEEVSGGAEMSVLDLPELVLECILEKLPPSGLCNMAAVC 120
                                 E V  G EM +LDLPELVLECILE+LPP GLC++  VC
Sbjct: 56  ---------------------FENVEVGLEMGLLDLPELVLECILERLPPEGLCSLGGVC 94

Query: 121 SSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLASRKDSTHLKQGKQRLWMKLFSF 180
           SSLRDRCMSD+ W++HMK+KWGRI+G AAYREWQWH+ASRKDS  L+QGK    M+L S 
Sbjct: 95  SSLRDRCMSDYFWKRHMKEKWGRILGRAAYREWQWHMASRKDSDTLEQGKPNGLMRLLSR 154

Query: 181 VRSFSWVRSKVHDTSKQTTTTRLPVDSNSIMSWYLALETGRFWFPAQVYNRENGHVGFML 240
               SW+RS++ +++ Q ++  +PVDS  IMSWYLALETGRFWFPAQVYNRE+GHVGFML
Sbjct: 155 FGPLSWIRSRLSNSTPQRSS--VPVDS--IMSWYLALETGRFWFPAQVYNRESGHVGFML 210

Query: 241 SCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCLNDL 300
           SCYDAELSYD  TDTFQARYPPHGRR +AIE GV W+RLRA PV+T PHDLH+SDCLN+L
Sbjct: 211 SCYDAELSYDSHTDTFQARYPPHGRRTVAIENGVSWDRLRAPPVETPPHDLHMSDCLNEL 270

Query: 301 HPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSETLILEFNQYTPGSRWR 360
           HPGDHIEIQWRRNKEFPYGWWYG+VGHLESCDGNE++C CHNSET++LEFNQYTPGSRWR
Sbjct: 271 HPGDHIEIQWRRNKEFPYGWWYGIVGHLESCDGNESYCRCHNSETVVLEFNQYTPGSRWR 330

Query: 361 KTTINRKDHREEGNEADGFYGGIRKVNNEEEIKMWKRLWPVEVLE 405
           +T+INRKDHREEGNEADGFYGGIRK+   +EI +WK+LWP EVLE
Sbjct: 331 RTSINRKDHREEGNEADGFYGGIRKLCRNDEISVWKQLWPAEVLE 375

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106001|ref|XP_002314008.1| predicted protein [Populus trichocarpa] gi|222850416|gb|EEE87963.1| predicted protein [Populus trichocarpa]

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 286/409 (69%), Positives = 325/409 (79%), Gaps = 8/409 (1%)

Query: 1   MLLYLIITCFSLILFLNCLALKPLPPWARPTELRLLSLCFWKEISFFSIPSSLKNSL-NI 59
           MLLY  ITCFS ILFL  L LKPL PWA  +E+RLLS+ F K++  FS   SL+N+L  +
Sbjct: 1   MLLYFFITCFSFILFLKPLPLKPLLPWA--SEIRLLSVWFLKDLFLFSYLGSLRNTLLEV 58

Query: 60  TTIIIPSPKLSFKHMMSTSNDHVEEVSGGAE---MSVLDLPELVLECILEKLPPSGLCNM 116
             I I   K S K M  +S+   E+ +   E   MSVLDLPEL LEC+LE+LPP+GLC+M
Sbjct: 59  FYINIIPLKTSIKKMSLSSSARAEKSALDDETGGMSVLDLPELALECVLERLPPAGLCSM 118

Query: 117 AAVCSSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLASRKDSTHLKQGKQRLWMK 176
           A VC+SLR+RC+SDHLWEKHMK KWGR++GPAAYREWQWHLASRKD    KQGK +  M+
Sbjct: 119 AGVCTSLRERCVSDHLWEKHMKHKWGRVIGPAAYREWQWHLASRKDLGSCKQGKPKGLMR 178

Query: 177 LFSFVRSFSWVRSKVHDTSKQTTTTRLPVDSNSIMSWYLALETGRFWFPAQVYNRENGHV 236
           L S     SW   KV   +     + LPV  +SIMSWYLALETG+FWFPAQV+NRENGHV
Sbjct: 179 LLSIFWPSSWSTPKVDPVNNSRQRSSLPV--HSIMSWYLALETGKFWFPAQVFNRENGHV 236

Query: 237 GFMLSCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDC 296
           GFMLSCYDAEL+YD  TDTFQARYPPHGRR I+IE GVPWERLRA  VDTSPHDLHISDC
Sbjct: 237 GFMLSCYDAELNYDPRTDTFQARYPPHGRRAISIESGVPWERLRAPSVDTSPHDLHISDC 296

Query: 297 LNDLHPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSETLILEFNQYTPG 356
           L+DL PGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNEN+C CHNS+T++LEF+QYTPG
Sbjct: 297 LHDLLPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENYCRCHNSDTVVLEFHQYTPG 356

Query: 357 SRWRKTTINRKDHREEGNEADGFYGGIRKVNNEEEIKMWKRLWPVEVLE 405
           SRWR TT+NRK+HREEGNEADGFYGGIRK+   EEI  WKRLWP EVLE
Sbjct: 357 SRWRSTTVNRKEHREEGNEADGFYGGIRKLYKNEEISRWKRLWPTEVLE 405

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444855|ref|XP_004140189.1| PREDICTED: F-box protein At2g32560-like isoform 2 [Cucumis sativus]

 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 271/405 (66%), Positives = 311/405 (76%), Gaps = 37/405 (9%)

Query: 1   MLLYLIITCFSLILFLNCLALKPLPPWARPTELRLLSLCFWKEISFFSIPSSLKNSLNIT 60
           MLL   +TC S ILFL  L+LKPLP WA   E+R LS  FWKE+SFF I  +++ S    
Sbjct: 1   MLLCFFLTCISFILFLKSLSLKPLPLWA--DEMRFLSHWFWKELSFFPIYKNVEES---- 54

Query: 61  TIIIPSPKLSFKHMMSTSNDHVEEVSGGAEMSVLDLPELVLECILEKLPPSGLCNMAAVC 120
                                        EMSVLDLPEL LECILEKLPP  LC+MA VC
Sbjct: 55  ----------------------------GEMSVLDLPELALECILEKLPPDALCSMAGVC 86

Query: 121 SSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLASRKDSTHLKQGKQRLWMKLFSF 180
           SSLR+RC+SDHLWEKHMK+KWG+++G AAYREWQWHLASR   ++LKQ KQ+  ++LFSF
Sbjct: 87  SSLRERCISDHLWEKHMKRKWGKVIGQAAYREWQWHLASRAGESNLKQNKQKSLIRLFSF 146

Query: 181 VRSFSWVRSKVHDTSKQTTTTRLPVDSNSIMSWYLALETGRFWFPAQVYNRENGHVGFML 240
             S SW+RSKV++ S  T  T LPVDS  IM+WYLALETGRFWFPAQVYNRENGHVGFML
Sbjct: 147 GWSLSWIRSKVNENS-NTPRTFLPVDS--IMAWYLALETGRFWFPAQVYNRENGHVGFML 203

Query: 241 SCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCLNDL 300
           SCYDAEL YD  TDTFQARYPPHGRR IAIE GV WERLR+ P+DT PHDLH+SDCLN+L
Sbjct: 204 SCYDAELCYDLRTDTFQARYPPHGRRAIAIENGVQWERLRSPPIDTPPHDLHVSDCLNEL 263

Query: 301 HPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSETLILEFNQYTPGSRWR 360
            PGDHIEIQWR+NK+FPYGWWYGVVGHLE+CDG+ N C CH S+T++LEFNQYTPGSRWR
Sbjct: 264 WPGDHIEIQWRKNKDFPYGWWYGVVGHLETCDGDANHCSCHYSDTVVLEFNQYTPGSRWR 323

Query: 361 KTTINRKDHREEGNEADGFYGGIRKVNNEEEIKMWKRLWPVEVLE 405
              I+RKDHREEGNE DGFYGGIRK+ + EEI MWK+LWP ++LE
Sbjct: 324 LAIIDRKDHREEGNEVDGFYGGIRKLYSNEEISMWKQLWPTDILE 368

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585161|ref|XP_002533285.1| conserved hypothetical protein [Ricinus communis] gi|223526888|gb|EEF29096.1| conserved hypothetical protein [Ricinus communis]

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 276/396 (69%), Positives = 310/396 (78%), Gaps = 14/396 (3%)

Query: 19  LALKPLPPWARPTELRLLSLCFWKEISFFSIPSSLKNSLNITTII--IPSPKLSFKHMMS 76
           L L+PLP WA  +E+RLLSL FWKE+  F    S +N+L    I   IPS K+S K M  
Sbjct: 18  LPLEPLPSWA--SEVRLLSLWFWKELFLFPYFGSFRNTLFKACISTRIPS-KMSMKKMAL 74

Query: 77  TSNDHVE-------EVSGGAEMSVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMS 129
             N  +E       E    +E+SVLDLPEL LECILEKLPP GLC+MA VC+SLR RC+S
Sbjct: 75  ICNGKLEQQQHQQAEDDEISEVSVLDLPELALECILEKLPPKGLCSMAGVCTSLRQRCLS 134

Query: 130 DHLWEKHMKQKWGRIVGPAAYREWQWHLASRKDSTHLKQGKQRLWMKLFSFVRSFSWVRS 189
           DHLWE+HMKQKWG+I+GPAAYREWQ+H+ASR D    KQGKQ+  MKL S V   SW+  
Sbjct: 135 DHLWERHMKQKWGKIIGPAAYREWQFHIASRNDFGTCKQGKQKGLMKLLSIVWPPSWIIP 194

Query: 190 KVHDTSKQTTTTRLPVDSNSIMSWYLALETGRFWFPAQVYNRENGHVGFMLSCYDAELSY 249
           K          + LPVDS  IMSWYLALETGRFWFPAQVYNRENGHVGFMLSCYDA+LSY
Sbjct: 195 KDDCNIFIKQRSSLPVDS--IMSWYLALETGRFWFPAQVYNRENGHVGFMLSCYDADLSY 252

Query: 250 DQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCLNDLHPGDHIEIQ 309
           D   DTFQARYPPHGRR  AIE GVPWERLRA P DTSPHDLHISDCLN+L PGDHIEIQ
Sbjct: 253 DPRKDTFQARYPPHGRRATAIENGVPWERLRAPPADTSPHDLHISDCLNELRPGDHIEIQ 312

Query: 310 WRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSETLILEFNQYTPGSRWRKTTINRKDH 369
           WRRNKEFPYGWWYGVVGHLESCDGNEN+C CHNS+T++LEF+QYT GSRWR T INRK+H
Sbjct: 313 WRRNKEFPYGWWYGVVGHLESCDGNENYCRCHNSDTVVLEFHQYTRGSRWRYTMINRKEH 372

Query: 370 REEGNEADGFYGGIRKVNNEEEIKMWKRLWPVEVLE 405
           R+EGNEADGFYGGIRK+N++EEI  WK+LWP EVLE
Sbjct: 373 RQEGNEADGFYGGIRKLNSKEEISRWKQLWPTEVLE 408

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501388|ref|XP_003519507.1| PREDICTED: F-box protein At2g32560-like [Glycine max]

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 262/406 (64%), Positives = 312/406 (76%), Gaps = 10/406 (2%)

Query: 1   MLLYLIITCFSLILFLN-CLALKPLPPWARPTELRLLSLCFWKEISFFSIPSSLKNSLNI 59
           MLLY I TC S  LFL   L+LK LP WA  +E+RL+S  F+K++S  SI    +  L +
Sbjct: 1   MLLYFI-TCISFFLFLKPILSLKSLPSWA--SEVRLISPLFYKDLSVKSISKLFRKRLWL 57

Query: 60  TTIIIPSPKLSFKHMMSTSNDHVEEVSGGAEMSVLDLPELVLECILEKLPPSGLCNMAAV 119
             +     ++  +  +   +  VE +    +MSVLDLPELVLECILEKLPP  LC MA V
Sbjct: 58  GFL----GQIPTRMSLVNKSSKVEIIEDSQDMSVLDLPELVLECILEKLPPPSLCQMAGV 113

Query: 120 CSSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLASRKDSTHLKQGKQRLWMKLFS 179
           C SLR+ C+SDHLWE+HMKQKWGR++G AAYREW+WH AS+ +   L+ GKQR  ++L S
Sbjct: 114 CRSLRESCVSDHLWERHMKQKWGRVIGQAAYREWKWHAASKGNVGTLRHGKQRSLLRLVS 173

Query: 180 FVRSFSWVRSKVHDTSKQTTTTRLPVDSNSIMSWYLALETGRFWFPAQVYNRENGHVGFM 239
               FSW+R+KV   +     + LP DS  +M+WYLALETG FWFPAQVYNRENGHVGFM
Sbjct: 174 LSWPFSWMRTKVDANNSIKQQSYLPPDS--LMTWYLALETGNFWFPAQVYNRENGHVGFM 231

Query: 240 LSCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCLND 299
           LSCYDAELSYD  TDTFQARYPPHGRR +A+E G+PWERLRA PVDT PHDLHISDCL D
Sbjct: 232 LSCYDAELSYDPHTDTFQARYPPHGRRAVAVEHGIPWERLRAPPVDTPPHDLHISDCLYD 291

Query: 300 LHPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSETLILEFNQYTPGSRW 359
           LHPGDH+EIQWRRNKEFPYGWWYGVVGHLE CDGNEN+C CH+S+T++LEFNQY P SRW
Sbjct: 292 LHPGDHVEIQWRRNKEFPYGWWYGVVGHLEVCDGNENYCRCHSSDTVVLEFNQYNPDSRW 351

Query: 360 RKTTINRKDHREEGNEADGFYGGIRKVNNEEEIKMWKRLWPVEVLE 405
            KTTI+R+DHREEGNEADGFYGGIRK+ +E EI +WK +WP EVL+
Sbjct: 352 GKTTISRRDHREEGNEADGFYGGIRKIKSETEISIWKSIWPSEVLD 397

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055285|ref|XP_002298461.1| f-box family protein [Populus trichocarpa] gi|222845719|gb|EEE83266.1| f-box family protein [Populus trichocarpa]

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 273/405 (67%), Positives = 302/405 (74%), Gaps = 37/405 (9%)

Query: 1   MLLYLIITCFSLILFLNCLALKPLPPWARPTELRLLSLCFWKEISFFSIPSSLKNSLNIT 60
           MLLY  ITCFS +L L  L LKPLPPW   +E+RLLS  F K++  FS   SL+      
Sbjct: 1   MLLYFFITCFSFVLLLKPLPLKPLPPWT--SEMRLLSFWFLKDLLLFSYLGSLRT----- 53

Query: 61  TIIIPSPKLSFKHMMSTSNDHVEEVSGGAEMSVLDLPELVLECILEKLPPSGLCNMAAVC 120
                                        EMSVLDLPEL LECILE+LPP+GLC+MA VC
Sbjct: 54  ----------------------------GEMSVLDLPELALECILERLPPAGLCSMAGVC 85

Query: 121 SSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLASRKDSTHLKQGKQRLWMKLFSF 180
           +SLR+RC+SDHLWEKHMKQKWGR++GPAAYREWQWHLASRKD    KQGK +   +L S 
Sbjct: 86  TSLRERCVSDHLWEKHMKQKWGRVIGPAAYREWQWHLASRKDLGSCKQGKPKGLTRLLSM 145

Query: 181 VRSFSWVRSKVHDTSKQTTTTRLPVDSNSIMSWYLALETGRFWFPAQVYNRENGHVGFML 240
               SW   K    +     + LPV  NSIMSWYLALETG+FWFPAQV+NRENGHVGFML
Sbjct: 146 FWPSSWSTPKADPINNSKQRSSLPV--NSIMSWYLALETGKFWFPAQVFNRENGHVGFML 203

Query: 241 SCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCLNDL 300
           SCYDA LSYD  TDTFQ RYPPHGRR IA E GVPWERLRA P DTSPHDLHISDCLNDL
Sbjct: 204 SCYDANLSYDPGTDTFQVRYPPHGRRAIATESGVPWERLRAPPFDTSPHDLHISDCLNDL 263

Query: 301 HPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSETLILEFNQYTPGSRWR 360
            PGDHIEIQWRRNKEFPYGWWYGVVGHLE CDGNEN+C CHNS+T++LEF+QYTPGSRWR
Sbjct: 264 RPGDHIEIQWRRNKEFPYGWWYGVVGHLELCDGNENYCRCHNSDTVVLEFHQYTPGSRWR 323

Query: 361 KTTINRKDHREEGNEADGFYGGIRKVNNEEEIKMWKRLWPVEVLE 405
            T +NRK+HREEG+EADGFYGGIRK+ N EEI  WKRLWP EVLE
Sbjct: 324 STAVNRKEHREEGDEADGFYGGIRKLYNNEEISRWKRLWPTEVLE 368

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554183|ref|XP_003545428.1| PREDICTED: F-box protein At2g32560-like [Glycine max]

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 267/405 (65%), Positives = 316/405 (78%), Gaps = 8/405 (1%)

Query: 1   MLLYLIITCFSLILFLNCLALKPLPPWARPTELRLLSLCFWKEISFFSIPSSLKNSLNIT 60
           MLLYLI     L+     L+LKPLP WA  +ELRL+S  F+K++S  SI    +N L + 
Sbjct: 1   MLLYLITCISFLLFLKPLLSLKPLPSWA--SELRLISPLFYKDLSVKSISKLFRNRLWLG 58

Query: 61  TIIIPSPKLSFKHMMSTSNDHVEEVSGGAEMSVLDLPELVLECILEKLPPSGLCNMAAVC 120
            +     ++S   +M  S+  VE +    +MSVLDLPELVLECILEKLPP+ LC MA VC
Sbjct: 59  FLCQIPTRMS---LMKKSSK-VENIEDSQDMSVLDLPELVLECILEKLPPASLCQMAGVC 114

Query: 121 SSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLASRKDSTHLKQGKQRLWMKLFSF 180
            SLR+ C+SDHLWE+HMKQKWGRI+G AAYREW+WH+AS+ +   L+ GKQR  ++L S 
Sbjct: 115 RSLRESCVSDHLWERHMKQKWGRIIGQAAYREWKWHVASKGNVGTLRHGKQRSLLRLVSL 174

Query: 181 VRSFSWVRSKVHDTSKQTTTTRLPVDSNSIMSWYLALETGRFWFPAQVYNRENGHVGFML 240
              FSW+R+KV   +     + LP DS  +M+WYLALETG FWFPAQVYNRENGHVGFML
Sbjct: 175 SWPFSWMRTKVDANNSIKQQSYLPPDS--LMTWYLALETGNFWFPAQVYNRENGHVGFML 232

Query: 241 SCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCLNDL 300
           SCYDAELSYD   DTFQARYPPHGRR +A+E G+PWERLRA PVDT PHDLHISDC+ DL
Sbjct: 233 SCYDAELSYDPHNDTFQARYPPHGRRTVAVEHGIPWERLRAPPVDTPPHDLHISDCVYDL 292

Query: 301 HPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSETLILEFNQYTPGSRWR 360
           HPGDHIEIQWRRNKEFPYGWWYGVVGHLE CDGNEN+C CH+S+T++LEFNQYTP SRWR
Sbjct: 293 HPGDHIEIQWRRNKEFPYGWWYGVVGHLELCDGNENYCRCHSSDTVVLEFNQYTPDSRWR 352

Query: 361 KTTINRKDHREEGNEADGFYGGIRKVNNEEEIKMWKRLWPVEVLE 405
           KTTI+RKDHREEGNEADGFYGGIRK+ +E EI +WK +WP EVL+
Sbjct: 353 KTTISRKDHREEGNEADGFYGGIRKIKSETEISIWKSIWPSEVLD 397

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577644|ref|XP_003556934.1| PREDICTED: F-box protein At2g32560-like [Glycine max]

 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 262/405 (64%), Positives = 311/405 (76%), Gaps = 6/405 (1%)

Query: 1   MLLYLIITCFSLILFLNCLALKPLPPWARPTELRLLSLCFWKEISFFSIPSSLKNSLNIT 60
           MLLY I TC S  LFL  L LKPLP WA  +E+ L  L F +E S  +I    +N   I 
Sbjct: 1   MLLYFI-TCISFFLFLKSLLLKPLPSWA--SEMWLFPLLFSQEFSMSTISKLFRNRFWIG 57

Query: 61  TIIIPSPKLSFKHMMSTSNDHVEEVSGGAEMSVLDLPELVLECILEKLPPSGLCNMAAVC 120
            +      +S      TS   VE V    +MSVLDLPEL L+CILE+LPPS LC +AAVC
Sbjct: 58  FLCQIPIGMSLVRKSLTSR--VENVEESLDMSVLDLPELALDCILERLPPSSLCRIAAVC 115

Query: 121 SSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLASRKDSTHLKQGKQRLWMKLFSF 180
            +LR+RC+SDHLWEKHM++KWGR++GPAAYREW+WH+AS+++   LK G+Q+  M+  S 
Sbjct: 116 RTLRERCVSDHLWEKHMRKKWGRVIGPAAYREWKWHVASKRNVGGLKHGRQKGLMRFMSL 175

Query: 181 VRSFSWVRSKVHDTSKQTTTTRLPVDSNSIMSWYLALETGRFWFPAQVYNRENGHVGFML 240
              F W+R KV D +      R  +  +S+M+WYLALE+G FWFPAQVYNRENGHVGFML
Sbjct: 176 HWPFQWIRPKV-DANYNNPKLRSSLPVDSVMNWYLALESGNFWFPAQVYNRENGHVGFML 234

Query: 241 SCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCLNDL 300
           SCYDAELSYD  TDTFQARYPPHGRR  A ECG+PWERLRA P+DTSPHDLH+SDCLNDL
Sbjct: 235 SCYDAELSYDPRTDTFQARYPPHGRRADARECGIPWERLRAPPIDTSPHDLHVSDCLNDL 294

Query: 301 HPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSETLILEFNQYTPGSRWR 360
           +PGDHIEIQWRRNKEFPYGWWYGVVGHLESC+G+EN+C CH+S+T++LEFN YTPGSRWR
Sbjct: 295 YPGDHIEIQWRRNKEFPYGWWYGVVGHLESCNGSENYCRCHSSDTVVLEFNHYTPGSRWR 354

Query: 361 KTTINRKDHREEGNEADGFYGGIRKVNNEEEIKMWKRLWPVEVLE 405
            TT++RKDHREEGNEADGFYGGIRK+ +E EI  WK LWP EVL+
Sbjct: 355 LTTVSRKDHREEGNEADGFYGGIRKITSEAEIATWKCLWPSEVLD 399

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	405
TAIR|locus:2060236	371	AT2G32560 "AT2G32560" [Arabido	0.874	0.954	0.617	5.5e-128
TAIR|locus:2039498	371	AT2G26850 "AT2G26850" [Arabido	0.886	0.967	0.611	5.1e-122
TAIR|locus:2063167	371	AT2G41170 "AT2G41170" [Arabido	0.888	0.970	0.506	3.8e-101

TAIR|locus:2060236 AT2G32560 "AT2G32560" [Arabidopsis thaliana (taxid:3702)]

 Score = 1192 (424.7 bits), Expect = 5.5e-128, Sum P(2) = 5.5e-128
 Identities = 228/369 (61%), Positives = 271/369 (73%)

Query:    40 FWKEISFFSIPSSLKNSLNITTIIIPSPKLSFKHMMSTSNDHVEEVSGGAEMSVLDLPEL 99
             F K +S     S  K  L+     I +P ++  H   T +D    V    +MSVLDLPEL
Sbjct:    15 FTKSLSLPPWASETKTLLSF--YFIKNPFMNTLHQ--TKHDPASPVID--QMSVLDLPEL 68

Query:   100 VLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQWHLAS 159
              L+CIL+ LPPSGLC+MA VCSSLR+RC+SDHLWEKH+K KWG+I+GPAA+REWQ +++S
Sbjct:    69 ALDCILDLLPPSGLCSMARVCSSLRERCVSDHLWEKHLKTKWGKILGPAAHREWQCYISS 128

Query:   160 RK---DSTHLKQGKQRLWMKLXXXXXXXXXXXXKVHDTSKQTTTTRLPVDSNSIMSWYLA 216
                  DS H + G    + K+            +  D  ++   + LP+DS+  MS YL+
Sbjct:   129 STYHLDSPHHQTGNLG-FAKIISLIRSLSSVFRE--DKQRRGYASSLPLDSS--MSCYLS 183

Query:   217 LETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDQSTDTFQARYPPHGRRPIAIECGVPW 276
             LETGRFWFPAQVYNRENGHVGFMLSCYDAELSYD  TDTFQARYPPHGRR  AIE GV W
Sbjct:   184 LETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDTHTDTFQARYPPHGRRASAIEKGVTW 243

Query:   277 ERLRAAPVDTSPHDLHISDCLNDLHPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNEN 336
             +R+RAAP+D SPH LH+SD L +L PGDHIEIQWRRNKEFPYGWWYG+V HLESCDG+ N
Sbjct:   244 DRIRAAPIDASPHLLHVSDSLKELKPGDHIEIQWRRNKEFPYGWWYGLVRHLESCDGDHN 303

Query:   337 FCHCHNSETLILEFNQYTPGSRWRKTTINRKDHREEGNEADGFYGGIRKVNNEEEIKMWK 396
              CHCH SET++LEFNQYT GSRWR+T I R DH+EEGNE DGFYGGIRK+N +EEI MWK
Sbjct:   304 HCHCHLSETVVLEFNQYTVGSRWRRTMIMR-DHKEEGNEEDGFYGGIRKLNCKEEIAMWK 362

Query:   397 RLWPVEVLE 405
             R WP  +LE
Sbjct:   363 RHWPCSILE 371

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2039498 AT2G26850 "AT2G26850" [Arabidopsis thaliana (taxid:3702)]

 Score = 1200 (427.5 bits), Expect = 5.1e-122, P = 5.1e-122
 Identities = 228/373 (61%), Positives = 274/373 (73%)

Query:    36 LSLCFW-KEISFFSIPSSLKNSLNITTIIIPSPKLSFKHMMSTSNDHVEEVSGGAEMSVL 94
             LS  F+ K +SF    S  KN L+       S  L    +   + D    V G  +MS+L
Sbjct:    10 LSFFFFSKSLSFPQWASKTKNLLSFYF----SKYLFTNSLHQITPDLASPVLG--KMSIL 63

Query:    95 DLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQ 154
             DLP+L L+CILE LPPS LC MA VCSSLR+RC+SDHLWEKH+K KWG+I+GP+A++EWQ
Sbjct:    64 DLPDLPLDCILELLPPSELCTMARVCSSLRERCVSDHLWEKHLKTKWGKILGPSAHKEWQ 123

Query:   155 WHLAS--RKDSTHLKQGKQRLWMKLXXXXXXXXXXXXKVHDTSKQTTTTRLPVDSNSIMS 212
              +L+S    DS H K     L  K+               D  ++   + +P+DS   M+
Sbjct:   124 CYLSSPYHLDSPHHKTSHLGL-AKIISLMRSLSSIFRD--DDHRRRYPSSIPLDST--MN 178

Query:   213 WYLALETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDQSTDTFQARYPPHGRRPIAIEC 272
             +YL+LETGRFWFPAQVYNRENGHVGFMLSCYDAELSYD  T+TFQARYPPHG+R IA+E 
Sbjct:   179 FYLSLETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDTDTNTFQARYPPHGKRAIAVEK 238

Query:   273 GVPWERLRAAPVDTSPHDLHISDCLNDLHPGDHIEIQWRRNKEFPYGWWYGVVGHLESCD 332
              V WER+RAAPVD SPH+L++SD LN+L PGDHIEIQWRRNKEFPYGWWY VVGH+ESCD
Sbjct:   239 DVTWERIRAAPVDASPHNLYVSDSLNELKPGDHIEIQWRRNKEFPYGWWYSVVGHMESCD 298

Query:   333 GNENFCHCHNSETLILEFNQYTPGSRWRKTTINRKDHREEGNEADGFYGGIRKVNNEEEI 392
             GN N C CHNSE ++LEFNQYT GSRWRKT INR+DHRE+GNE DGFYGGIRK+N +E+I
Sbjct:   299 GNLNHCQCHNSEMMVLEFNQYTVGSRWRKTMINRRDHREKGNEEDGFYGGIRKINCKEDI 358

Query:   393 KMWKRLWPVEVLE 405
             +MWKRLWP  +LE
Sbjct:   359 EMWKRLWPSSILE 371

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0030048 "actin filament-based movement" evidence=RCA

TAIR|locus:2063167 AT2G41170 "AT2G41170" [Arabidopsis thaliana (taxid:3702)]

 Score = 1003 (358.1 bits), Expect = 3.8e-101, P = 3.8e-101
 Identities = 192/379 (50%), Positives = 248/379 (65%)

Query:    33 LRLLSLCFWKEISFFSIPSSLKNSLNITTIIIPSPKLSFKHMMSTSNDHVEEVSGGAEMS 92
             L  +S CF   I  F I S L  S+    I      L+++        + E+ +   +MS
Sbjct:     6 LTFISFCFSITICGFLIVSWLARSIIRNGI----RTLTWRKETKRKKKNQEDEN---KMS 58

Query:    93 VLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWGRIVGPAAYRE 152
             +LDLP+L L+CILEKL PS LC M +VCS LRD+C+SDHLWEKHM+ KWGR++G AA +E
Sbjct:    59 LLDLPDLTLDCILEKLSPSELCAMTSVCSELRDKCVSDHLWEKHMETKWGRLMGDAAIQE 118

Query:   153 WQWHLAS-----RKDSTHLKQGKQRLWMKLXXXXXXXXXXXXKVHDTSKQTTTTRL-PVD 206
             W+ H+A+        S+  ++ K   W                 H    + +++ L P+D
Sbjct:   119 WKSHVATIMRCLTSSSSSSRKSKPN-WSSRFVANLKPFAWLSSNHGCENRGSSSYLAPID 177

Query:   207 SNSIMSWYLALETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDQSTDTFQARYPPHGRR 266
             S  +M WY  LE G+FWFPAQVYNRENGHVGFM+SCYDA++ YD  TDTFQARY  HGRR
Sbjct:   178 S--VMYWYSNLENGKFWFPAQVYNRENGHVGFMMSCYDAKIRYDFKTDTFQARYSAHGRR 235

Query:   267 PIAIECGVPWERLRAAPVDTSPHDLHISDCLNDLHPGDHIEIQWRRNKEFPYGWWYGVVG 326
               A E  V W+RLR +  DT   DLH+SDCL+ L PGDH EIQWRR KEFPYGWW+G+VG
Sbjct:   236 --AAEEKVTWQRLRPSQDDTKSRDLHVSDCLHGLRPGDHFEIQWRRTKEFPYGWWFGIVG 293

Query:   327 HLESCDGNENFCHCHNSETLILEFNQYTPGSRWRKTTINRKDHREEGNEADGFYGGIRKV 386
             HL++CDG +N C C + E +++EF Q+ P S WR+T I RKDHRE GNE +GFYGG++K+
Sbjct:   294 HLQNCDGVQN-CRCDSDENVVMEFRQFRPESPWRRTVIKRKDHRETGNEENGFYGGVKKL 352

Query:   387 NNEEEIKMWKRLWPVEVLE 405
               EEEI  WK+LWP + LE
Sbjct:   353 GTEEEISTWKQLWPSQALE 371


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.136   0.455    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      405       393   0.00095  117 3  11 22  0.37    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  630 (67 KB)
  Total size of DFA:  331 KB (2164 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  30.12u 0.18s 30.30t   Elapsed:  00:00:02
  Total cpu time:  30.12u 0.18s 30.30t   Elapsed:  00:00:02
  Start:  Sat May 11 06:04:52 2013   End:  Sat May 11 06:04:54 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8RY82	FB121_ARATH	No assigned EC number	0.6029	0.9086	0.9919	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	405
pfam00646	48	pfam00646, F-box, F-box domain	6e-06
pfam12937	47	pfam12937, F-box-like, F-box-like	8e-06
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	6e-05

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 42.9 bits (102), Expect = 6e-06
 Identities = 17/48 (35%), Positives = 25/48 (52%)

Query: 91  MSVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMK 138
            S+LDLP+ +L  IL +L P  L  ++ V    R    S  LW+K + 
Sbjct: 1   FSLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKRLL 48

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 42.5 bits (101), Expect = 8e-06
 Identities = 15/43 (34%), Positives = 21/43 (48%)

Query: 93  VLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEK 135
           + DLP+ +L  I   L P  L  +A VC   R+    D LW +
Sbjct: 1   LSDLPDEILLQIFSYLDPRDLLRLALVCRRWRELASDDSLWRR 43

This is an F-box-like family. Length = 47

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 39.7 bits (94), Expect = 6e-05
 Identities = 15/41 (36%), Positives = 18/41 (43%)

Query: 96  LPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKH 136
           LP+ +LE IL KL P  L  +  V    R    S   W K 
Sbjct: 1   LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDFWFKL 41

Length = 41

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	405
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.89
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.67
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.49
KOG2997	366	consensus F-box protein FBX9 [General function pre	95.36
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	95.21
PF06881	109	Elongin_A: RNA polymerase II transcription factor	94.8
PF13013	109	F-box-like_2: F-box-like domain	93.02
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	92.76
KOG3926	332	consensus F-box proteins [Amino acid transport and	84.11
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	84.08
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	82.91
KOG1708	236	consensus Mitochondrial/chloroplast ribosomal prot	80.94

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.89  E-value=1.8e-09  Score=77.03  Aligned_cols=44  Identities=27%  Similarity=0.506  Sum_probs=40.0

Q ss_pred             CCCcHHHHHHHHccCChhhHHHHHhhcHHHHHhccChhHHHHhh
Q 015516           94 LDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHM  137 (405)
Q Consensus        94 LDLPeelLd~ILs~LSP~DLcrmAaVCrsLRerc~SD~LWeklV  137 (405)
                      .+||+|++..|+++|+|.||++++.||+.+|+.+.++.||.++.
T Consensus         2 ~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~   45 (47)
T PF12937_consen    2 SSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLC   45 (47)
T ss_dssp             CCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC
T ss_pred             hHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhc
Confidence            58999999999999999999999999999999999999999864

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.67  E-value=9.8e-09  Score=72.47  Aligned_cols=47  Identities=32%  Similarity=0.526  Sum_probs=40.9

Q ss_pred             CCCCCCcHHHHHHHHccCChhhHHHHHhhcHHHHHhccChhHHHHhh
Q 015516           91 MSVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHM  137 (405)
Q Consensus        91 ~sLLDLPeelLd~ILs~LSP~DLcrmAaVCrsLRerc~SD~LWeklV  137 (405)
                      +++.+||++++..|+++|++.|+++++.||+.+|+.+.++.+|.+..
T Consensus         1 ~~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~   47 (48)
T PF00646_consen    1 FPLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKII   47 (48)
T ss_dssp             -HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred             CCHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence            36789999999999999999999999999999999999999998864

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.49  E-value=1.4e-07  Score=63.54  Aligned_cols=40  Identities=40%  Similarity=0.620  Sum_probs=38.7

Q ss_pred             CcHHHHHHHHccCChhhHHHHHhhcHHHHHhccChhHHHH
Q 015516           96 LPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEK  135 (405)
Q Consensus        96 LPeelLd~ILs~LSP~DLcrmAaVCrsLRerc~SD~LWek  135 (405)
                      ||++++..|+++|++.|++++++||+.+|..+.++.+|.+
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~   40 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK   40 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence            7999999999999999999999999999999999999975

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=95.36  E-value=0.013  Score=59.77  Aligned_cols=52  Identities=25%  Similarity=0.406  Sum_probs=44.4

Q ss_pred             CCCCCcHHHHHHHHccCC-----hhhHHHHHhhcHHHHHhccChhHHHHhhhhhhcc
Q 015516           92 SVLDLPELVLECILEKLP-----PSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWGR  143 (405)
Q Consensus        92 sLLDLPeelLd~ILs~LS-----P~DLcrmAaVCrsLRerc~SD~LWeklV~~kwp~  143 (405)
                      .+..||+|+|=.|+...=     -.+|-++|+||+.|+..|+.|.||...--.-|++
T Consensus       106 ~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~  162 (366)
T KOG2997|consen  106 SISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQR  162 (366)
T ss_pred             hhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHH
Confidence            368999999999887654     5999999999999999999999999876655553

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=95.21  E-value=0.019  Score=58.87  Aligned_cols=50  Identities=22%  Similarity=0.361  Sum_probs=45.5

Q ss_pred             CCCCCCCCCCcHHHHHHHHccCChhhHHHHHhhcHHHHHhccChhHHHHh
Q 015516           87 GGAEMSVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKH  136 (405)
Q Consensus        87 ~~~~~sLLDLPeelLd~ILs~LSP~DLcrmAaVCrsLRerc~SD~LWekl  136 (405)
                      --.+.+.-.||+|++.+|.+.|.-.||.+|+.||+.+..-+....+|..+
T Consensus        92 ~npgv~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~l  141 (419)
T KOG2120|consen   92 NNPGVSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTL  141 (419)
T ss_pred             cCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeee
Confidence            34556788999999999999999999999999999999999999999764

>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A

Probab=94.80  E-value=0.036  Score=46.73  Aligned_cols=60  Identities=30%  Similarity=0.496  Sum_probs=50.9

Q ss_pred             CCCCcHHHHHHHHccCChhhHHHHHhhcHHHHHhccChhHHHHhhhhhhccc---cCccccchhh
Q 015516           93 VLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWGRI---VGPAAYREWQ  154 (405)
Q Consensus        93 LLDLPeelLd~ILs~LSP~DLcrmAaVCrsLRerc~SD~LWeklV~~kwp~v---Lgpaa~~eWq  154 (405)
                      +.++|-.+|.-||...+|..|.++-.-|..|...  +|.||.+|+++..|.-   -.|....+|.
T Consensus         4 vG~~py~ll~piL~~~~~~QL~~iE~~np~l~~~--tdeLW~~~i~rdFp~~~~~~~~~~~~~Wr   66 (109)
T PF06881_consen    4 VGDVPYHLLRPILEKCSPEQLRRIEDNNPHLIED--TDELWKKLIKRDFPEESKRQKPKEPESWR   66 (109)
T ss_pred             cCCCCHHHHHHHHccCCHHHHHHHHHhCCCcchh--hHHHHHHHHHhHCcChhhcccccccchHH
Confidence            6789999999999999999999999999888776  7999999999999952   2444445773

In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane

>PF13013 F-box-like_2: F-box-like domain

Probab=93.02  E-value=0.12  Score=44.77  Aligned_cols=44  Identities=27%  Similarity=0.493  Sum_probs=37.7

Q ss_pred             CCCCCCcHHHHHHHHccCChhhHHHHHhhcHHHHHhccChhHHHHh
Q 015516           91 MSVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKH  136 (405)
Q Consensus        91 ~sLLDLPeelLd~ILs~LSP~DLcrmAaVCrsLRerc~SD~LWekl  136 (405)
                      ..++|||+|++..|+.+-.+.++..+..+|+.+|.+.  +++|..+
T Consensus        20 ltl~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~~r--~~~~~~L   63 (109)
T PF13013_consen   20 LTLLDLPWELLQLIFDYCNDPILLALSRTCRAYRSWR--DHIWYLL   63 (109)
T ss_pred             cchhhChHHHHHHHHhhcCcHHHHHHHHHHHHHHHHH--HHHHHHh
Confidence            4699999999999999999999999999999998765  3455544

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=92.76  E-value=0.098  Score=53.60  Aligned_cols=39  Identities=26%  Similarity=0.366  Sum_probs=35.6

Q ss_pred             CCCCCCcHHHHHHHHccC-ChhhHHHHHhhcHHHHHhccC
Q 015516           91 MSVLDLPELVLECILEKL-PPSGLCNMAAVCSSLRDRCMS  129 (405)
Q Consensus        91 ~sLLDLPeelLd~ILs~L-SP~DLcrmAaVCrsLRerc~S  129 (405)
                      ++.-+||+++|+.|..+| +..|+.++++||++-|.+...
T Consensus         2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            356799999999999999 889999999999999998775

>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]

Probab=84.11  E-value=1.4  Score=44.84  Aligned_cols=50  Identities=24%  Similarity=0.357  Sum_probs=45.6

Q ss_pred             CCCCCCCCcHHHHHHHHccCCh-hhHHHHHhhcHHHHHhccChhHHHHhhh
Q 015516           89 AEMSVLDLPELVLECILEKLPP-SGLCNMAAVCSSLRDRCMSDHLWEKHMK  138 (405)
Q Consensus        89 ~~~sLLDLPeelLd~ILs~LSP-~DLcrmAaVCrsLRerc~SD~LWeklV~  138 (405)
                      .+.-|.|||++++-.||-+||- .||..+|+|=.+|.+-...+.+|.++-+
T Consensus       198 ~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcq  248 (332)
T KOG3926|consen  198 AGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQ  248 (332)
T ss_pred             CCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            4577999999999999999984 8999999999999999999999998754

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=84.08  E-value=1.3  Score=46.46  Aligned_cols=68  Identities=25%  Similarity=0.447  Sum_probs=58.2

Q ss_pred             CCCCc----HHHHHHHHccCChhhHHHHHhhcHHHHHhccChhHHHHhhhhhhccc-c--Cccccchhhhhhhcc
Q 015516           93 VLDLP----ELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWGRI-V--GPAAYREWQWHLASR  160 (405)
Q Consensus        93 LLDLP----eelLd~ILs~LSP~DLcrmAaVCrsLRerc~SD~LWeklV~~kwp~v-L--gpaa~~eWq~h~~~~  160 (405)
                      ...||    +++-+.||+||...|||+--.||+.-+......-+|.+++.+++... +  |-+-++.|..++-+.
T Consensus        75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie~~vr~dslWrgl~e~rqw~~~lf~~  149 (499)
T KOG0281|consen   75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIERMVRTDSLWRGLSERRQWDQYLFKN  149 (499)
T ss_pred             HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHHHhcchHHHHhhhhhccCcchhhccC
Confidence            34688    99999999999999999999999999999999999999999998733 2  777777887766543

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=82.91  E-value=0.64  Score=49.46  Aligned_cols=54  Identities=22%  Similarity=0.283  Sum_probs=49.0

Q ss_pred             CCCCCCcHHHHHHHHccCChhhHHHHHhhcHHHHHhccChhHHHHhhhhhhccc
Q 015516           91 MSVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWGRI  144 (405)
Q Consensus        91 ~sLLDLPeelLd~ILs~LSP~DLcrmAaVCrsLRerc~SD~LWeklV~~kwp~v  144 (405)
                      --+..||.|+.-.||.+|++.+|+++++||+..+..+..|..|-+...+.-+..
T Consensus       106 dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~  159 (537)
T KOG0274|consen  106 DFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRL  159 (537)
T ss_pred             chhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccC
Confidence            358899999999999999999999999999999999999999998877766653

>KOG1708 consensus Mitochondrial/chloroplast ribosomal protein L24 [Translation, ribosomal structure and biogenesis]

Probab=80.94  E-value=2  Score=41.88  Aligned_cols=82  Identities=32%  Similarity=0.487  Sum_probs=56.3

Q ss_pred             eeeecCCCccccccCCCCCC-CcccccccccCCCCCCCeeEEEeeccCCCCccceeeeeccccccCCCCCceecccCCeE
Q 015516          268 IAIECGVPWERLRAAPVDTS-PHDLHISDCLNDLHPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENFCHCHNSETL  346 (405)
Q Consensus       268 ~~ie~~i~WdRlRapPvdT~-~~dlh~Sdcl~dLkPGDHiEIQWRrnkefPYgWWYgvVGHlesC~gn~~~C~Ch~sdtv  346 (405)
                      .+...+-+|+|.|.+|++-. -||.|       +.+||.|||-               ||---.=.|-.-.-.-|+|++|
T Consensus        47 ~~~qk~~~w~rrr~~~~e~i~d~dw~-------ff~GDtVeVl---------------vGkDkGkqG~Vtqv~r~~s~Vv  104 (236)
T KOG1708|consen   47 LVLQKNKPWERRRCVPVEPIIDEDWH-------FFFGDTVEVL---------------VGKDKGKQGEVTQVIRHRSWVV  104 (236)
T ss_pred             hHHhhcCccccccCCCCCCcccccee-------EecCCEEEEE---------------ecccCCccceEEEEeecCceEE
Confidence            34456789999999999877 47887       7899999994               4443333344334444555555


Q ss_pred             EEEEeecCCCCcceeeecccccccccccccCccccceecc
Q 015516          347 ILEFNQYTPGSRWRKTTINRKDHREEGNEADGFYGGIRKV  386 (405)
Q Consensus       347 vlEF~qY~~gSrWR~t~inRk~hrEeG~e~dGfyGGIRKL  386 (405)
                      |=..              |=| .+-.|.|.+||=|-|+|.
T Consensus       105 V~gl--------------n~k-~r~~gsekeg~pgtivk~  129 (236)
T KOG1708|consen  105 VKGL--------------NTK-YRHMGSEKEGEPGTIVKS  129 (236)
T ss_pred             Eccc--------------chh-hhhhcccccCCCceEEee
Confidence            5322              222 267899999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	405
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 2e-09
 Identities = 42/231 (18%), Positives = 78/231 (33%), Gaps = 67/231 (29%)

Query: 11  SLILFLNCLALKP--LPPWARPTELRLLSLC------------FWKEISFFSIPSSLKNS 56
              L L  L  +P  LP     T  R LS+              WK ++   + + +++S
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 57  LNITT-----------------IIIPSPKLSFKHMMSTSNDHVEEVSGGAEMSVLDLPEL 99
           LN+                     IP+  LS    +   +    +V     M V++  +L
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLS----LIWFDVIKSDV-----MVVVN--KL 411

Query: 100 VLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMK-----------QKWGRIVGPA 148
               ++EK P     ++ ++   L  +   ++ +  H                  I    
Sbjct: 412 HKYSLVEKQPKESTISIPSI--YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469

Query: 149 -AYREWQWHLASRKDSTHLKQGKQRLWMKLFS--FVRSFSWVRSKV-HDTS 195
             Y  +  H+       HLK  +    M LF   F+  F ++  K+ HD++
Sbjct: 470 DQY--FYSHIGH-----HLKNIEHPERMTLFRMVFL-DFRFLEQKIRHDST 512

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 50/287 (17%), Positives = 95/287 (33%), Gaps = 64/287 (22%)

Query: 11  SLILFLNCLALKPLPPWA----RPTELRLLSLCFWKEISFFSIPSSLKNSLNITTII--- 63
           +++  L  L  +  P W       + ++L       E+         +N L    ++   
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL----LVLLN 252

Query: 64  IPSPKL--SF----KHMMSTSNDHVEEVSGGAEMSVLDLPEL---------------VLE 102
           + + K   +F    K +++T    V +    A  + + L                   L+
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 103 CILEKLPPSG------LCNMAAVCSSLRDR-CMSDHLWEKHMKQKWGRIVG-------PA 148
           C  + LP           ++ A   S+RD     D+ W+     K   I+        PA
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIA--ESIRDGLATWDN-WKHVNCDKLTTIIESSLNVLEPA 369

Query: 149 AYREWQWHLASRKDSTHLKQGK-QRLWMKLFSFVRSFSWVRSKVHDTSKQTTTTRLPVDS 207
            YR+    L+    S H+       +W  +         V   V+   K +   + P +S
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD-----VMVVVNKLHKYSLVEKQPKES 424

Query: 208 N-SIMSWYLALETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDQST 253
             SI S YL L+        ++ N    H   ++  Y+   ++D   
Sbjct: 425 TISIPSIYLELK-------VKLENEYALHRS-IVDHYNIPKTFDSDD 463

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	405
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.2
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.17
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.1
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.05
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.97
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.4
3h8z_A	128	FragIle X mental retardation syndrome-related Pro;	97.05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	94.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	94.12
2lkt_A	125	Retinoic acid receptor responder protein 3; TIG3,	80.5

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.97  E-value=3.9e-10  Score=80.65  Aligned_cols=49  Identities=22%  Similarity=0.291  Sum_probs=40.6

Q ss_pred             CCCCCCCCCcHHHHHHHHccCChhhHHHHHhhcHHHHHhccChhHHHHh
Q 015516           88 GAEMSVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKH  136 (405)
Q Consensus        88 ~~~~sLLDLPeelLd~ILs~LSP~DLcrmAaVCrsLRerc~SD~LWekl  136 (405)
                      ..+.++.+||+|+|..|+++|++.||+++++||+.+|+.+.++.||.++
T Consensus         4 ~~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l   52 (53)
T 1fs1_A            4 FPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL   52 (53)
T ss_dssp             -----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred             CCCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence            3456799999999999999999999999999999999999999999864

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.20  E-value=1.1e-06  Score=80.40  Aligned_cols=50  Identities=24%  Similarity=0.340  Sum_probs=46.7

Q ss_pred             CCCCCCcHHHHHHHHccCChhhHHHHHhhcHHHHHhccChhHHHHhhhhh
Q 015516           91 MSVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQK  140 (405)
Q Consensus        91 ~sLLDLPeelLd~ILs~LSP~DLcrmAaVCrsLRerc~SD~LWeklV~~k  140 (405)
                      -.+.+||+|++..||+||+|.||+++++||+.+|+.+.++.||+++.++.
T Consensus        17 d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~   66 (445)
T 2ovr_B           17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEE   66 (445)
T ss_dssp             STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTT
T ss_pred             ChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeec
Confidence            45888999999999999999999999999999999999999999998654

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.17  E-value=1.1e-06  Score=85.67  Aligned_cols=54  Identities=22%  Similarity=0.433  Sum_probs=48.8

Q ss_pred             CCCCCcHHHHHHHHccCChhhHHHHHhhcHHHHHhccChhHHHHhhhh---hhcccc
Q 015516           92 SVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQ---KWGRIV  145 (405)
Q Consensus        92 sLLDLPeelLd~ILs~LSP~DLcrmAaVCrsLRerc~SD~LWeklV~~---kwp~vL  145 (405)
                      .+-+||.+++-.||+||+|.|||++++||+..|..++.+.||..++.+   +|+.+-
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~~W~si~   60 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVD   60 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGGGCCCCC
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCCCCCccc
Confidence            467899999999999999999999999999999999999999999985   455443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.10  E-value=1.6e-06  Score=79.50  Aligned_cols=51  Identities=25%  Similarity=0.419  Sum_probs=47.8

Q ss_pred             CCCCCcHH----HHHHHHccCChhhHHHHHhhcHHHHHhccChhHHHHhhhhhhc
Q 015516           92 SVLDLPEL----VLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWG  142 (405)
Q Consensus        92 sLLDLPee----lLd~ILs~LSP~DLcrmAaVCrsLRerc~SD~LWeklV~~kwp  142 (405)
                      .+..||+|    ++..||+||+|.||+++++||+.+|+.+..+.||.++..+.+.
T Consensus        10 ~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~   64 (435)
T 1p22_A           10 FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVR   64 (435)
T ss_dssp             HHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred             hHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcC
Confidence            46679999    9999999999999999999999999999999999999998864

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.05  E-value=2e-06  Score=78.41  Aligned_cols=49  Identities=18%  Similarity=0.214  Sum_probs=45.2

Q ss_pred             CCCCCcHHHHHHHHccCChhhHHHHHhhcHHHHHhccC-hhHHHHhhhhh
Q 015516           92 SVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMS-DHLWEKHMKQK  140 (405)
Q Consensus        92 sLLDLPeelLd~ILs~LSP~DLcrmAaVCrsLRerc~S-D~LWeklV~~k  140 (405)
                      .+.+||+|++..||+||+|.||++.++||+..++.+.+ +.||.++..+.
T Consensus        14 ~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~   63 (464)
T 3v7d_B           14 LITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISE   63 (464)
T ss_dssp             HHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             ChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcc
Confidence            46789999999999999999999999999999999998 89999998544

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=97.97  E-value=5.3e-06  Score=79.82  Aligned_cols=50  Identities=26%  Similarity=0.431  Sum_probs=48.2

Q ss_pred             CCCCCCcHHHHHHHHccCChhhHH-HHHhhcHHHHHhccChhHHHHhhhhh
Q 015516           91 MSVLDLPELVLECILEKLPPSGLC-NMAAVCSSLRDRCMSDHLWEKHMKQK  140 (405)
Q Consensus        91 ~sLLDLPeelLd~ILs~LSP~DLc-rmAaVCrsLRerc~SD~LWeklV~~k  140 (405)
                      +.+.+||+++|..||++|+|.||+ +.++||+..|+.+.++.||.++..+.
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~   99 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE   99 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc
Confidence            578899999999999999999999 99999999999999999999999887

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.40  E-value=5e-05  Score=67.68  Aligned_cols=49  Identities=22%  Similarity=0.307  Sum_probs=41.6

Q ss_pred             CCCCCCCCCCcHHHHHHHHccCChhhHHHHHhhcHHHHHhccChhHHHH
Q 015516           87 GGAEMSVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEK  135 (405)
Q Consensus        87 ~~~~~sLLDLPeelLd~ILs~LSP~DLcrmAaVCrsLRerc~SD~LWek  135 (405)
                      ..++.++-+||+|+|..|+++|+..|+++++.||+..|+.+.+..+|..
T Consensus         3 ~~~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~   51 (336)
T 2ast_B            3 NFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQT   51 (336)
T ss_dssp             ----CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSE
T ss_pred             ccccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhhee
Confidence            3456789999999999999999999999999999999999877777764

>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*

Probab=97.05  E-value=0.001  Score=57.69  Aligned_cols=77  Identities=22%  Similarity=0.524  Sum_probs=52.0

Q ss_pred             CCcceeecCCCCCCCceeeecCCCccccccCCCCCCCcccccccccCCCCCCCeeEEEeeccCCCCccceeeeecccccc
Q 015516          252 STDTFQARYPPHGRRPIAIECGVPWERLRAAPVDTSPHDLHISDCLNDLHPGDHIEIQWRRNKEFPYGWWYGVVGHLESC  331 (405)
Q Consensus       252 ~TDTF~ARYpphGrr~~~ie~~i~WdRlRapPvdT~~~dlh~Sdcl~dLkPGDHiEIQWRrnkefPYgWWYgvVGHlesC  331 (405)
                      ..|.+..+|.. .++   .|+.|+-+.+|.||...+       +  .++..||.|||=+|.|-.=|.|||-|.|   -.+
T Consensus        26 ~~d~~~V~f~n-~w~---~~~~vp~~~vRlpP~~~~-------~--~~f~~gd~VEV~~~~~d~ep~gWw~a~I---~~~   89 (128)
T 3h8z_A           26 HEDSVTIFFEN-NWQ---SERQIPFGDVRLPPPADY-------N--KEITEGDEVEVYSRANEQEPCGWWLARV---RMM   89 (128)
T ss_dssp             CSSEEEEEETT-CTT---CCEEEEGGGEECCCCC-------------CCCTTCEEEEEECC---CCCEEEEEEE---EEE
T ss_pred             eCCcEEEEEcc-ccC---cceEechhhEEcCCCccc-------c--cCCCCCCEEEEEecCCCCCcCccEEEEE---EEe
Confidence            45555555532 233   277888899999997653       2  3789999999999999999999999999   455


Q ss_pred             CCCCCceecccCCeEEEEEeecC
Q 015516          332 DGNENFCHCHNSETLILEFNQYT  354 (405)
Q Consensus       332 ~gn~~~C~Ch~sdtvvlEF~qY~  354 (405)
                      .|+          ..++||.-|.
T Consensus        90 kg~----------f~~V~y~~~~  102 (128)
T 3h8z_A           90 KGD----------FYVIEYAACD  102 (128)
T ss_dssp             ETT----------EEEEEETTC-
T ss_pred             eCC----------EEEEEEcCCC
Confidence            555          6677766554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=94.95  E-value=0.014  Score=55.75  Aligned_cols=34  Identities=26%  Similarity=0.415  Sum_probs=29.3

Q ss_pred             CCCCcHHHHHHHHccCC-hhhHHHHHhhcHHHHHh
Q 015516           93 VLDLPELVLECILEKLP-PSGLCNMAAVCSSLRDR  126 (405)
Q Consensus        93 LLDLPeelLd~ILs~LS-P~DLcrmAaVCrsLRer  126 (405)
                      +-+||+|+|..|+++|+ +.|+++++.||+..|+.
T Consensus         6 ~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            6 ALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             ----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             hhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            56799999999999999 99999999999999987

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=94.12  E-value=0.023  Score=54.44  Aligned_cols=36  Identities=17%  Similarity=0.247  Sum_probs=32.2

Q ss_pred             CCCCCCcHHHHHHHHccC-ChhhHHHHHhhcHHHHHh
Q 015516           91 MSVLDLPELVLECILEKL-PPSGLCNMAAVCSSLRDR  126 (405)
Q Consensus        91 ~sLLDLPeelLd~ILs~L-SP~DLcrmAaVCrsLRer  126 (405)
                      ....+||+++|..|+++| ++.|+++++.||+..+..
T Consensus        11 ~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~   47 (592)
T 3ogk_B           11 LSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI   47 (592)
T ss_dssp             -CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred             hccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence            345689999999999999 899999999999998876

>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}

Probab=80.50  E-value=0.84  Score=37.62  Aligned_cols=13  Identities=46%  Similarity=0.662  Sum_probs=11.3

Q ss_pred             cCCCCCCCeeEEE
Q 015516          297 LNDLHPGDHIEIQ  309 (405)
Q Consensus       297 l~dLkPGDHiEIQ  309 (405)
                      -.+.||||||||+
T Consensus         5 ~~ep~pGDlI~~~   17 (125)
T 2lkt_A            5 HQEPKPGDLIEIF   17 (125)
T ss_dssp             SCCCCTTCEEEEE
T ss_pred             CCCCCCCCEEEEe
Confidence            4689999999995

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	405
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	1e-05
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	2e-05
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	5e-05

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (97), Expect = 1e-05
 Identities = 14/81 (17%), Positives = 24/81 (29%)

Query: 95  DLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWGRIVGPAAYREWQ 154
            LP+ +   +L  L P  L   A  C   R     + LW +  K++          R+  
Sbjct: 21  LLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVI 80

Query: 155 WHLASRKDSTHLKQGKQRLWM 175
                          + R+  
Sbjct: 81  KPGFIHSPWKSAYIRQHRIDT 101

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 2e-05
 Identities = 14/90 (15%), Positives = 29/90 (32%), Gaps = 6/90 (6%)

Query: 95  DLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQK------WGRIVGPA 148
              + + E IL  L    LC    VC           LW+K +++       W  +    
Sbjct: 17  RGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERR 76

Query: 149 AYREWQWHLASRKDSTHLKQGKQRLWMKLF 178
            + ++ +       +       + L+ K+ 
Sbjct: 77  GWGQYLFKNKPPDGNAPPNSFYRALYPKII 106

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (89), Expect = 5e-05
 Identities = 10/39 (25%), Positives = 15/39 (38%)

Query: 95  DLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLW 133
            LP+ +L  I   L    L  ++ VC         + LW
Sbjct: 3   SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW 41

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	405
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.0
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.92
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.6
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.52
d1ng2a2	118	p47pox (neutrophil cytosolic factor 1) {Human (Hom	81.79

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.5e-10  Score=89.41  Aligned_cols=52  Identities=23%  Similarity=0.273  Sum_probs=48.3

Q ss_pred             CCCCCCcHHHHHHHHccCChhhHHHHHhhcHHHHHhccChhHHHHhhhhhhc
Q 015516           91 MSVLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWG  142 (405)
Q Consensus        91 ~sLLDLPeelLd~ILs~LSP~DLcrmAaVCrsLRerc~SD~LWeklV~~kwp  142 (405)
                      -++..||+|++..||++|+|.|||++|+||+.+++.+.+|.||+++..+.+.
T Consensus        17 D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r~~~   68 (102)
T d2ovrb1          17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGI   68 (102)
T ss_dssp             STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTC
T ss_pred             CChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcCC
Confidence            4678899999999999999999999999999999999999999999876654

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=3.2e-10  Score=77.95  Aligned_cols=40  Identities=25%  Similarity=0.395  Sum_probs=38.8

Q ss_pred             CCCcHHHHHHHHccCChhhHHHHHhhcHHHHHhccChhHH
Q 015516           94 LDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLW  133 (405)
Q Consensus        94 LDLPeelLd~ILs~LSP~DLcrmAaVCrsLRerc~SD~LW  133 (405)
                      -.||+|++..|+++|+|.||+++++||+.+++.+.++.||
T Consensus         2 ~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~lW   41 (41)
T d1fs1a1           2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW   41 (41)
T ss_dssp             CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred             CcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccC
Confidence            4799999999999999999999999999999999999998

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.60  E-value=6.8e-09  Score=80.84  Aligned_cols=48  Identities=19%  Similarity=0.236  Sum_probs=42.9

Q ss_pred             CCCCcHHHHHHHHccCChhhHHHHHhhcHHHHHhccCh-hHHHHhhhhh
Q 015516           93 VLDLPELVLECILEKLPPSGLCNMAAVCSSLRDRCMSD-HLWEKHMKQK  140 (405)
Q Consensus        93 LLDLPeelLd~ILs~LSP~DLcrmAaVCrsLRerc~SD-~LWeklV~~k  140 (405)
                      +.+||+|++..||++|+|.||+++++||+..++.+.+| .||.++.-..
T Consensus         6 ~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr~l~~~~   54 (100)
T d1nexb1           6 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISE   54 (100)
T ss_dssp             HHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHHHHHHHT
T ss_pred             hhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence            56799999999999999999999999999999998765 7999876543

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.8e-08  Score=80.07  Aligned_cols=51  Identities=25%  Similarity=0.439  Sum_probs=45.6

Q ss_pred             CCCCCc----HHHHHHHHccCChhhHHHHHhhcHHHHHhccChhHHHHhhhhhhc
Q 015516           92 SVLDLP----ELVLECILEKLPPSGLCNMAAVCSSLRDRCMSDHLWEKHMKQKWG  142 (405)
Q Consensus        92 sLLDLP----eelLd~ILs~LSP~DLcrmAaVCrsLRerc~SD~LWeklV~~kwp  142 (405)
                      .+..||    +|++..||+||++.|||++|+||+.+|+.+.+|.||.++..+.+.
T Consensus        10 ~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~~~~~~   64 (118)
T d1p22a1          10 FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVR   64 (118)
T ss_dssp             HHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred             HHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHhhcc
Confidence            345577    599999999999999999999999999999999999999876654

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.79  E-value=0.55  Score=36.29  Aligned_cols=28  Identities=25%  Similarity=0.534  Sum_probs=21.4

Q ss_pred             cccccCCCCCCCeeEEEeeccCCCCccceeeee
Q 015516          293 ISDCLNDLHPGDHIEIQWRRNKEFPYGWWYGVV  325 (405)
Q Consensus       293 ~Sdcl~dLkPGDHiEIQWRrnkefPYgWWYgvV  325 (405)
                      ..|.| .|+.||.|+|-=+.+ +   |||+|..
T Consensus        27 ~~dEL-s~~~Gd~i~Vl~~~~-~---gWw~g~~   54 (118)
T d1ng2a2          27 EGDEV-SLLEGEAVEVIHKLL-D---GWWVIRK   54 (118)
T ss_dssp             STTBC-CBCTTCEEEEEECCT-T---SEEEEEE
T ss_pred             CCCEe-cCCCCCEEEEeEecC-C---CeEEEEE
Confidence            46677 799999999974333 2   9999964