Citrus Sinensis ID: 015522

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-----

MKIGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMLDYDKRLQHSFTAHPKVDPYTGEMFTFGYAHTPPYITYRVISKDGFMHDPVPITVSDPIMMHDFAITENYAIFMDLPLYFRPKEMVKENKLIFTFDDTKKARFGILPRYAKNEAQMKWFELPNCFIFHNANAWEEEDEVVLITCRLDKPDLDMVNGAVKEKLENFSNELYEMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVSEEQLEEQAKL

ccEEccccccccccHHHHHHHHHHHccccccccccccEEEEEEccEEEEEEEccccEEEEEccccccEEccccccccccccccccccEEccccccEEEEEEcccccEEEEEEEcccccEEEEEEEEcccccEEEcccccccEEEEEEcccEEcHHHHHHcccEEEEEccccccEEEEEEccccccccEEEEEcccccccccccEEEEccEEEEEEEEccccccccccccccccccccccEEEEEEEEcccccEEEEEcccccccccccccccccccccEEEEEEEccccccccEEEEcccccccccEEEEEccccEEEEEEccccccccccEEEEcccccccccccEEEEEEEEEccccEEEEEEEEccccccccEEEEEccccccccccccccccHHHHHHHcc

ccccccccHHHHHHHHHHHHHHHHcccccccccccccEEEEEEccEEEEEccccccEEEEEcccccEEEccccccccccccccEcccccccccccEEEEEccccccEEEEEEEcccccEccccccccccccEEEcEEEcccEEEEccccEEEccHHHHcccccEEEEccccccEEEEEEccccccccEEEEEccccEEEEEEEcccccccEEEEEEEccccccccccccccccHHHccccEEEEEEEcccccEEEEEccccccccccccHHHcccccEEEEEEEEcccccEEEEEEEEcccccccccEEEEccccEEEEEEEcccccccccEEEcccccccccccccEEEEEEEcccccccEEEEEEccccccccEEEEEccccccccccEEEccHHHHHHHHcc

MKIGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLlalseadkpyavkvledgdlqtlgmldydkrlqhsftahpkvdpytgemftfgyahtppyityrviskdgfmhdpvpitvsdpimmhdfaITENYAifmdlplyfrpkemvkenkliftfddtkkarfgilpryakneaqmkwfelpncfifhnanaweeedEVVLITCrldkpdldmVNGAVKEKLENFSNELYEMRFNLKTGLASqkrlsasavdfprvnecytgrkqryvYGTILDSIAKVTGIIKfdlhaepdeektklevggnvrgifdlgpgrfgseavfvprepgtsseedvgYLIFFShdektgksSVNVIDaktmsadpvavvelphrvpygfhafFVSEEQLEEQAKL

MKIGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMLDYDKRLQHSFTAHPKVDPYTGEMFTFGYAHTPPYITYRVISKDGFMHDPVPITVSDPIMMHDFAITENYAIFMDLPLYFRPKEMVKENKliftfddtkkarFGILPRYAKNEAQMKWFELPNCFIFHNANAWEEEDEVVLITCRLDKPDLDMVNGAVKEKLENFSNELYEMRFNLKTGLASQkrlsasavdfprvnecytgrkqryvygTILDSIAKVTGIIKFDLhaepdeektklevggnvRGIFDLGPGRFGSEAVFVprepgtsseedVGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVSEEQLEEQAKL

****DLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMLDYDKRLQHSFTAHPKVDPYTGEMFTFGYAHTPPYITYRVISKDGFMHDPVPITVSDPIMMHDFAITENYAIFMDLPLYFRPKEMVKENKLIFTFDDTKKARFGILPRYAKNEAQMKWFELPNCFIFHNANAWEEEDEVVLITCRLDKPDLDMVNGAVKEKLENFSNELYEMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAE*****TKLEVGGNVRGIFDLGPGRFGSEAVFV**********DVGYLIFFSHDEK****SVNVIDAKTMSADPVAVVELPHRVPYGFHAFFV***********

*K*GDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMLDYDKRLQHSFTAHPKVDPYTGEMFTFGYAHTPPYITYRVISKDGFMHDPVPITVSDPIMMHDFAITENYAIFMDLPLYFRPKEMVKENKLIFTFDDTKKARFGILPRYAKNEAQMKWFELPNCFIFHNANAWEEEDEVVLITCRLDKPDLDMVNGAVKEKLENFSNELYEMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVSEEQLE*****

*KIGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMLDYDKRLQHSFTAHPKVDPYTGEMFTFGYAHTPPYITYRVISKDGFMHDPVPITVSDPIMMHDFAITENYAIFMDLPLYFRPKEMVKENKLIFTFDDTKKARFGILPRYAKNEAQMKWFELPNCFIFHNANAWEEEDEVVLITCRLDKPDLDMVNGAVKEKLENFSNELYEMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVSEEQLEE****

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		405	2.2.26 [Sep-21-2011]
Q8LP17		541	Carotenoid 9,10(9',10')-c	N/A	no	1.0	0.748	0.849	0.0
Q94IR2		543	Carotenoid 9,10(9',10')-c	N/A	no	1.0	0.745	0.846	0.0
O65572		538	Carotenoid 9,10(9',10')-c	yes	no	0.987	0.743	0.823	0.0
Q84KG5		546	Carotenoid 9,10(9',10')-c	N/A	no	0.992	0.736	0.835	0.0
Q9M9F5		657	9-cis-epoxycarotenoid dio	no	no	0.930	0.573	0.391	8e-72
O24592		604	9-cis-epoxycarotenoid dio	N/A	no	0.938	0.629	0.378	7e-71
O49675		595	Probable carotenoid cleav	no	no	0.879	0.598	0.393	4e-70
Q9LRR7		599	9-cis-epoxycarotenoid dio	no	no	0.928	0.627	0.382	1e-69
Q9LRM7		577	9-cis-epoxycarotenoid dio	no	no	0.930	0.653	0.372	1e-66
Q9C6Z1		589	Probable 9-cis-epoxycarot	no	no	0.933	0.641	0.383	2e-66

>sp\|Q8LP17\|CCD1_PEA Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum GN=CCD1 PE=2 SV=1	Back alignment and function desciption

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/405 (84%), Positives = 376/405 (92%)

Query: 1   MKIGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVK 60
           MKIGDLKGLFGLLMVNMQMLRAKLK+LDVSYG+GTANTALVYHH KLLALSE DKPYA+K
Sbjct: 137 MKIGDLKGLFGLLMVNMQMLRAKLKILDVSYGHGTANTALVYHHQKLLALSEGDKPYAIK 196

Query: 61  VLEDGDLQTLGMLDYDKRLQHSFTAHPKVDPYTGEMFTFGYAHTPPYITYRVISKDGFMH 120
           V EDGDLQTLGMLDYDKRL H+FTAHPKVDP+TGEMFTFGY+HT PY+TYRVISKDGFM 
Sbjct: 197 VFEDGDLQTLGMLDYDKRLGHNFTAHPKVDPFTGEMFTFGYSHTAPYVTYRVISKDGFMQ 256

Query: 121 DPVPITVSDPIMMHDFAITENYAIFMDLPLYFRPKEMVKENKLIFTFDDTKKARFGILPR 180
           DPVPIT+SDP+MMHDFAITENY+IFMDLPLYFRPKEMVK   LIF+FD TKKARFG+LPR
Sbjct: 257 DPVPITISDPVMMHDFAITENYSIFMDLPLYFRPKEMVKNKTLIFSFDSTKKARFGVLPR 316

Query: 181 YAKNEAQMKWFELPNCFIFHNANAWEEEDEVVLITCRLDKPDLDMVNGAVKEKLENFSNE 240
           YAK++  ++WFELPNCFIFHNANAWEEEDE+VLITCRL+ P+LD+V GAVKEKL+NFSNE
Sbjct: 317 YAKDDKHIRWFELPNCFIFHNANAWEEEDEIVLITCRLENPNLDVVGGAVKEKLDNFSNE 376

Query: 241 LYEMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLH 300
           LYEMRFN+KTG ASQK+LSAS VDFPRVNE YTGRKQRYVYGT LDSIAKVTGIIKFDLH
Sbjct: 377 LYEMRFNMKTGEASQKKLSASTVDFPRVNESYTGRKQRYVYGTTLDSIAKVTGIIKFDLH 436

Query: 301 AEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFFSHDEKTGK 360
           AEPD  KTKLEVGGNV+G++DLGPGRFGSEAV+VPR PGT SEED GYLIFF HDE TGK
Sbjct: 437 AEPDSGKTKLEVGGNVQGLYDLGPGRFGSEAVYVPRVPGTDSEEDDGYLIFFVHDENTGK 496

Query: 361 SSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVSEEQLEEQAKL 405
           S V+VIDAK MSA+PVAVVELP RVPYGFHAFFV+E+QL+EQAK 
Sbjct: 497 SFVHVIDAKRMSAEPVAVVELPQRVPYGFHAFFVTEDQLQEQAKF 541

Cleaves a variety of carotenoids at the 9-10 and 9'-10' double bonds. Probably not involved in abscisic acid biosynthesis.
Pisum sativum (taxid: 3888)
EC: 1EC: .EC: 1EC: 4EC: .EC: 9EC: 9EC: .EC: nEC: 4

>sp\|Q94IR2\|CCD1_PHAVU Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus vulgaris GN=CCD1 PE=1 SV=1	Back alignment and function description

>sp\|O65572\|CCD1_ARATH Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana GN=CCD1 PE=1 SV=2	Back alignment and function description

>sp\|Q84KG5\|CCD_CROSA Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Crocus sativus GN=CCD PE=1 SV=1	Back alignment and function description

>sp\|Q9M9F5\|NCED9_ARATH 9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic OS=Arabidopsis thaliana GN=NCED9 PE=2 SV=1	Back alignment and function description

>sp\|O24592\|NCED1_MAIZE 9-cis-epoxycarotenoid dioxygenase 1, chloroplastic OS=Zea mays GN=VP14 PE=1 SV=2	Back alignment and function description

>sp\|O49675\|CCD4_ARATH Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1	Back alignment and function description

>sp\|Q9LRR7\|NCED3_ARATH 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic OS=Arabidopsis thaliana GN=NCED3 PE=2 SV=1	Back alignment and function description

>sp\|Q9LRM7\|NCED6_ARATH 9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic OS=Arabidopsis thaliana GN=NCED6 PE=2 SV=1	Back alignment and function description

>sp\|Q9C6Z1\|NCED5_ARATH Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic OS=Arabidopsis thaliana GN=NCED5 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		405
90991008		523	carotenoid cleavage dioxygenase1 [Citrus	0.967	0.749	0.997	0.0
90991006		523	carotenoid cleavage dioxygenase1 [Citrus	0.967	0.749	0.994	0.0
307592509		552	carotenoid cleavage dioxygenase 1 [Manih	1.0	0.733	0.888	0.0
225450111		546	PREDICTED: carotenoid 9,10(9',10')-cleav	1.0	0.741	0.886	0.0
134285450		548	9-cis-epoxycarotenoid dioxygenase [Casta	1.0	0.739	0.888	0.0
61654494		542	9,10[9',10']carotenoid cleavage dioxygen	1.0	0.747	0.883	0.0
387763758		546	carotenoid cleavage dioxygenase 1 [Vitis	1.0	0.741	0.883	0.0
387763760		546	carotenoid cleavage dioxygenase 1 [Vitis	1.0	0.741	0.883	0.0
387763764		546	carotenoid cleavage dioxygenase 1 [Vitis	1.0	0.741	0.883	0.0
76560796		548	carotenoid cleavage dioxygenase 1 [Coffe	1.0	0.739	0.864	0.0

>gi\|90991008\|dbj\|BAE92958.1\| carotenoid cleavage dioxygenase1 [Citrus sinensis]	Back alignment and taxonomy information

 Score =  809 bits (2090), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/392 (99%), Positives = 391/392 (99%)

Query: 1   MKIGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVK 60
           MKIGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVK
Sbjct: 132 MKIGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVK 191

Query: 61  VLEDGDLQTLGMLDYDKRLQHSFTAHPKVDPYTGEMFTFGYAHTPPYITYRVISKDGFMH 120
           VLEDGDLQTLGMLDYDKRLQHSFTAHPKVDPYTGEMFTFGYAHTPPYITYRVISKDGFMH
Sbjct: 192 VLEDGDLQTLGMLDYDKRLQHSFTAHPKVDPYTGEMFTFGYAHTPPYITYRVISKDGFMH 251

Query: 121 DPVPITVSDPIMMHDFAITENYAIFMDLPLYFRPKEMVKENKLIFTFDDTKKARFGILPR 180
           DPVPITVSDPIMMHDFAITENYAIFMDLPLYFRPKEMVKENKLIFTFDDTKKARFGILPR
Sbjct: 252 DPVPITVSDPIMMHDFAITENYAIFMDLPLYFRPKEMVKENKLIFTFDDTKKARFGILPR 311

Query: 181 YAKNEAQMKWFELPNCFIFHNANAWEEEDEVVLITCRLDKPDLDMVNGAVKEKLENFSNE 240
           YAKNEAQMKWFELPNCFIFHNANAWEEEDEVVLITCRLDKPDLDMVNGAVKEKLENFSNE
Sbjct: 312 YAKNEAQMKWFELPNCFIFHNANAWEEEDEVVLITCRLDKPDLDMVNGAVKEKLENFSNE 371

Query: 241 LYEMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLH 300
           LYEMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLH
Sbjct: 372 LYEMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLH 431

Query: 301 AEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFFSHDEKTGK 360
           AEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFFSHDEKTGK
Sbjct: 432 AEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFFSHDEKTGK 491

Query: 361 SSVNVIDAKTMSADPVAVVELPHRVPYGFHAF 392
           SSVNVIDAKTMSADPVAVVELP RVPYGFHAF
Sbjct: 492 SSVNVIDAKTMSADPVAVVELPQRVPYGFHAF 523

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|90991006\|dbj\|BAE92957.1\| carotenoid cleavage dioxygenase1 [Citrus unshiu] gi\|90991010\|dbj\|BAE92959.1\| carotenoid cleavage dioxygenase1 [Citrus limon]	Back alignment and taxonomy information

>gi\|307592509\|gb\|ADN65332.1\| carotenoid cleavage dioxygenase 1 [Manihot esculenta]	Back alignment and taxonomy information

>gi\|225450111\|ref\|XP_002278750.1\| PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1 [Vitis vinifera] gi\|297736256\|emb\|CBI24894.3\| unnamed protein product [Vitis vinifera] gi\|387763762\|gb\|AFJ94679.1\| carotenoid cleavage dioxygenase 1 [Vitis vinifera] gi\|387763766\|gb\|AFJ94681.1\| carotenoid cleavage dioxygenase 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|134285450\|gb\|ABO69703.1\| 9-cis-epoxycarotenoid dioxygenase [Castanea mollissima]	Back alignment and taxonomy information

>gi\|61654494\|gb\|AAX48772.1\| 9,10[9',10']carotenoid cleavage dioxygenase [Vitis vinifera]	Back alignment and taxonomy information

>gi\|387763758\|gb\|AFJ94677.1\| carotenoid cleavage dioxygenase 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|387763760\|gb\|AFJ94678.1\| carotenoid cleavage dioxygenase 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|387763764\|gb\|AFJ94680.1\| carotenoid cleavage dioxygenase 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|76560796\|gb\|ABA43900.1\| carotenoid cleavage dioxygenase 1 [Coffea canephora]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		405
TAIR\|locus:2087418		538	CCD1 "carotenoid cleavage diox	0.985	0.741	0.825	5e-186
TAIR\|locus:2091652		599	NCED3 "nine-cis-epoxycarotenoi	0.928	0.627	0.389	2.4e-69
TAIR\|locus:2134796		595	NCED4 "nine-cis-epoxycarotenoi	0.879	0.598	0.393	5.6e-68
TAIR\|locus:2202492		589	NCED5 "nine-cis-epoxycarotenoi	0.933	0.641	0.386	1.2e-63
TAIR\|locus:2124489		583	NCED2 "nine-cis-epoxycarotenoi	0.935	0.650	0.351	8.6e-56
TAIR\|locus:2032085		657	NCED9 "nine-cis-epoxycarotenoi	0.854	0.526	0.360	2.6e-54
TAIR\|locus:2093751		577	NCED6 "nine-cis-epoxycarotenoi	0.856	0.601	0.353	2.1e-52
UNIPROTKB\|Q53353		485	Q53353 "Lignostilbene-alpha,be	0.871	0.727	0.293	7.7e-32
UNIPROTKB\|O06785		501	MT0683 "Carotenoid cleavage ox	0.301	0.243	0.380	2.7e-31
UNIPROTKB\|Q52008		490	lsdB "Lignostilbene-alpha,beta	0.869	0.718	0.289	2e-28

TAIR\|locus:2087418 CCD1 "carotenoid cleavage dioxygenase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1804 (640.1 bits), Expect = 5.0e-186, P = 5.0e-186
 Identities = 332/402 (82%), Positives = 369/402 (91%)

Query:     1 MKIGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVK 60
             MKIGDLKG FGLLMVN+Q LR KLK+LD +YGNGTANTALVYHHGKLLAL EADKPY +K
Sbjct:   137 MKIGDLKGFFGLLMVNVQQLRTKLKILDNTYGNGTANTALVYHHGKLLALQEADKPYVIK 196

Query:    61 VLEDGDLQTLGMLDYDKRLQHSFTAHPKVDPYTGEMFTFGYAHTPPYITYRVISKDGFMH 120
             VLEDGDLQTLG++DYDKRL HSFTAHPKVDP TGEMFTFGY+HTPPY+TYRVISKDG MH
Sbjct:   197 VLEDGDLQTLGIIDYDKRLTHSFTAHPKVDPVTGEMFTFGYSHTPPYLTYRVISKDGIMH 256

Query:   121 DPVPITVSDPIMMHDFAITENYAIFMDLPLYFRPKEMVKENKLIFTFDDTKKARFGILPR 180
             DPVPIT+S+PIMMHDFAITE YAIFMDLP++FRPKEMVKE K+I++FD TKKARFG+LPR
Sbjct:   257 DPVPITISEPIMMHDFAITETYAIFMDLPMHFRPKEMVKEKKMIYSFDPTKKARFGVLPR 316

Query:   181 YAKNEAQMKWFELPNCFIFHNANAWEEEDEVVLITCRLDKPDLDMVNGAVKEKLENFSNE 240
             YAK+E  ++WFELPNCFIFHNANAWEEEDEVVLITCRL+ PDLDMV+G VKEKLENF NE
Sbjct:   317 YAKDELMIRWFELPNCFIFHNANAWEEEDEVVLITCRLENPDLDMVSGKVKEKLENFGNE 376

Query:   241 LYEMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLH 300
             LYEMRFN+KTG ASQK+LSASAVDFPR+NECYTG+KQRYVYGTILDSIAKVTGIIKFDLH
Sbjct:   377 LYEMRFNMKTGSASQKKLSASAVDFPRINECYTGKKQRYVYGTILDSIAKVTGIIKFDLH 436

Query:   301 AEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFFSHDEKTGK 360
             AE +  K  LEVGGN++GI+DLG GR+GSEA++VPRE   ++EED GYLIFF HDE TGK
Sbjct:   437 AEAETGKRMLEVGGNIKGIYDLGEGRYGSEAIYVPRE---TAEEDDGYLIFFVHDENTGK 493

Query:   361 SSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVSEEQLEEQ 402
             S V VIDAKTMSA+PVAVVELPHRVPYGFHA FV+EEQL+EQ
Sbjct:   494 SCVTVIDAKTMSAEPVAVVELPHRVPYGFHALFVTEEQLQEQ 535

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0009414 "response to water deprivation" evidence=IEP

GO:0016118 "carotenoid catabolic process" evidence=IDA

GO:0045549 "9-cis-epoxycarotenoid dioxygenase activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0016121 "carotene catabolic process" evidence=IMP

GO:0016124 "xanthophyll catabolic process" evidence=IMP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0010304 "PSII associated light-harvesting complex II catabolic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0044242 "cellular lipid catabolic process" evidence=RCA

TAIR\|locus:2091652 NCED3 "nine-cis-epoxycarotenoid dioxygenase 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2134796 NCED4 "nine-cis-epoxycarotenoid dioxygenase 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2202492 NCED5 "nine-cis-epoxycarotenoid dioxygenase 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2124489 NCED2 "nine-cis-epoxycarotenoid dioxygenase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2032085 NCED9 "nine-cis-epoxycarotenoid dioxygenase 9" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2093751 NCED6 "nine-cis-epoxycarotenoid dioxygenase 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q53353 Q53353 "Lignostilbene-alpha,beta-dioxygenase isozyme I" [Sphingomonas paucimobilis (taxid:13689)]	Back alignment and assigned GO terms

UNIPROTKB\|O06785 MT0683 "Carotenoid cleavage oxygenase" [Mycobacterium tuberculosis (taxid:1773)]	Back alignment and assigned GO terms

UNIPROTKB\|Q52008 lsdB "Lignostilbene-alpha,beta-dioxygenase isozyme III" [Sphingomonas paucimobilis (taxid:13689)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84KG5	CCD_CROSA	1, ., 1, 4, ., 9, 9, ., n, 4	0.8358	0.9925	0.7362	N/A	no
Q8LP17	CCD1_PEA	1, ., 1, 4, ., 9, 9, ., n, 4	0.8493	1.0	0.7486	N/A	no
O65572	CCD1_ARATH	1, ., 1, 4, ., 9, 9, ., n, 4	0.8238	0.9876	0.7434	yes	no
Q94IR2	CCD1_PHAVU	1, ., 1, 4, ., 9, 9, ., n, 4	0.8469	1.0	0.7458	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.14.99.n4	0.991
3rd Layer	1.14.99	0.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		405
PLN02491		545	PLN02491, PLN02491, carotenoid 9,10(9',10')-cleava	0.0
pfam03055		469	pfam03055, RPE65, Retinal pigment epithelial membr	1e-127
PLN02258		590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	1e-116
COG3670		490	COG3670, COG3670, Lignostilbene-alpha,beta-dioxyge	6e-88
PLN02969		610	PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygen	2e-11

>gnl\|CDD\|215271 PLN02491, PLN02491, carotenoid 9,10(9',10')-cleavage dioxygenase	Back alignment and domain information

 Score =  830 bits (2145), Expect = 0.0
 Identities = 362/405 (89%), Positives = 383/405 (94%)

Query: 1   MKIGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVK 60
           MKIGDLKGLFGLLMVNMQ LRAKLKVLD SYGNGT NTAL+YHHGKLLALSEADKPY VK
Sbjct: 141 MKIGDLKGLFGLLMVNMQQLRAKLKVLDFSYGNGTGNTALIYHHGKLLALSEADKPYVVK 200

Query: 61  VLEDGDLQTLGMLDYDKRLQHSFTAHPKVDPYTGEMFTFGYAHTPPYITYRVISKDGFMH 120
           VLEDGDLQTLG+LDYDKRL+HSFTAHPKVDP+TGEMFTFGY+H PPYITYRVISKDG MH
Sbjct: 201 VLEDGDLQTLGLLDYDKRLKHSFTAHPKVDPFTGEMFTFGYSHEPPYITYRVISKDGAMH 260

Query: 121 DPVPITVSDPIMMHDFAITENYAIFMDLPLYFRPKEMVKENKLIFTFDDTKKARFGILPR 180
           DPVPIT+S+PIMMHDFAITENYAIFMDLPLYFRPKEMVKE K I+TFD TKKARFG+LPR
Sbjct: 261 DPVPITISEPIMMHDFAITENYAIFMDLPLYFRPKEMVKEKKFIYTFDATKKARFGVLPR 320

Query: 181 YAKNEAQMKWFELPNCFIFHNANAWEEEDEVVLITCRLDKPDLDMVNGAVKEKLENFSNE 240
           YAK+E  ++WFELPNCFIFHNANAWEEEDEVVLITCRL+ PDLDMVNG VKEKLENF NE
Sbjct: 321 YAKDELMIRWFELPNCFIFHNANAWEEEDEVVLITCRLENPDLDMVNGKVKEKLENFGNE 380

Query: 241 LYEMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLH 300
           LYEMRFN+KTG ASQK+LSASAVDFPRVNE YTGRKQRYVYGTILDSIAKVTGIIKFDLH
Sbjct: 381 LYEMRFNMKTGAASQKKLSASAVDFPRVNESYTGRKQRYVYGTILDSIAKVTGIIKFDLH 440

Query: 301 AEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFFSHDEKTGK 360
           AEP+  K KLEVGGNV+GIFDLGPGRFGSEA+FVPREPGT+SEED GYLIFF HDE TGK
Sbjct: 441 AEPETGKKKLEVGGNVKGIFDLGPGRFGSEAIFVPREPGTTSEEDDGYLIFFVHDENTGK 500

Query: 361 SSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVSEEQLEEQAKL 405
           SSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFV+EEQL+EQAKL
Sbjct: 501 SSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVTEEQLQEQAKL 545

Length = 545

>gnl\|CDD\|217340 pfam03055, RPE65, Retinal pigment epithelial membrane protein	Back alignment and domain information

>gnl\|CDD\|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED	Back alignment and domain information

>gnl\|CDD\|226196 COG3670, COG3670, Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>gnl\|CDD\|215523 PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygenase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		405
PLN02491		545	carotenoid 9,10(9',10')-cleavage dioxygenase	100.0
PLN02258		590	9-cis-epoxycarotenoid dioxygenase NCED	100.0
COG3670		490	Lignostilbene-alpha,beta-dioxygenase and related e	100.0
PF03055		486	RPE65: Retinal pigment epithelial membrane protein	100.0
PLN02969		610	9-cis-epoxycarotenoid dioxygenase	100.0
KOG1285		582	consensus Beta, beta-carotene 15,15'-dioxygenase a	100.0
KOG1285		582	consensus Beta, beta-carotene 15,15'-dioxygenase a	99.85

>PLN02491 carotenoid 9,10(9',10')-cleavage dioxygenase	Back alignment and domain information

Probab=100.00  E-value=1.8e-101  Score=804.36  Aligned_cols=403  Identities=89%  Similarity=1.404  Sum_probs=357.9

Q ss_pred             ccccccchhHHHHHHHHHHHHHhcccccCCCCCcceeEEEEECCEEEEEEcCCccEEEEc-CCCCCccccceeccccccC
Q 015522            2 KIGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKV-LEDGDLQTLGMLDYDKRLQ   80 (405)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~ANt~V~~~~g~llAl~E~g~P~~ld~-~~~~tLeT~g~~d~~~~l~   80 (405)
                      +|+.++|++|.++.++..+|..++.++...++|+|||||++|+||||||||+|.||++++ || +||||+|++||+|+|.
T Consensus       142 ~~~~~~g~~g~~~~~~~~~r~~~~~~~~~~~~~~ANT~vi~~~grLlAl~E~g~Py~l~~~Dp-~tLeT~G~~df~g~l~  220 (545)
T PLN02491        142 KIGDLKGLFGLLMVNMQQLRAKLKVLDFSYGNGTGNTALIYHHGKLLALSEADKPYVVKVLED-GDLQTLGLLDYDKRLK  220 (545)
T ss_pred             ccccccccchhhhhhhhhhhccccccccccCCCCCceeEEEECCEEEEEEcCCCCeEecCCCC-CCcceeeecccCCccC
Confidence            367888999999999999999888777777789999999999999999999999999976 44 5999999999999999


Q ss_pred             CCCCCCceeeCCCCcEEEEEecCCCCeEEEEEEcCCCCeeeeEEEEeCCCcceeeeeecCCEEEEEeCCcccChHHHhhc
Q 015522           81 HSFTAHPKVDPYTGEMFTFGYAHTPPYITYRVISKDGFMHDPVPITVSDPIMMHDFAITENYAIFMDLPLYFRPKEMVKE  160 (405)
Q Consensus        81 ~~ftAHP~~Dp~tG~~~~fg~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~iHdf~vTeny~V~~~~P~~~~~~~~l~~  160 (405)
                      .+||||||+||+||||+|||++..+++++|+++|++|++.+.+++++|.++|||||+|||||+||+++|+.+++.+|+++
T Consensus       221 ~~~TAHPk~DP~TGel~~fgy~~~~p~~~y~~~~~~G~~~~~v~i~l~~~~~~HDFaiTeny~Vf~~~Pl~~~~~~~~~~  300 (545)
T PLN02491        221 HSFTAHPKVDPFTGEMFTFGYSHEPPYITYRVISKDGAMHDPVPITISEPIMMHDFAITENYAIFMDLPLYFRPKEMVKE  300 (545)
T ss_pred             cccccCccCcCCCCCEEEEEecCCCCcEEEEEECCCCcCcceeEeecCCCceeeeeEecCCEEEEEECCcccCHHHHhhC
Confidence            89999999999999999999988778999999999999988889999999999999999999999999999999999887


Q ss_pred             CCceeEEcCCCCcEEEEEeCCCCCCCceEEEEcCCeeEEecccceecCCeEEEEEEecCCCCccccchhhhhhccccccc
Q 015522          161 NKLIFTFDDTKKARFGILPRYAKNEAQMKWFELPNCFIFHNANAWEEEDEVVLITCRLDKPDLDMVNGAVKEKLENFSNE  240 (405)
Q Consensus       161 ~~~~~~w~~~~~t~~~vipR~~~~~~~v~~~~~~~~f~fH~~NAyE~~~~ivvd~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (405)
                      ++.++.|+|++++||+||||++++...++||++|+||+||++|||||+|+||+|.|++++++++...+...+..+...++
T Consensus       301 ~~~~~~~d~~~~~r~gVipR~~~~~~~irw~e~~~~f~fH~~NA~Ee~~~Ivvd~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (545)
T PLN02491        301 KKFIYTFDATKKARFGVLPRYAKDELMIRWFELPNCFIFHNANAWEEEDEVVLITCRLENPDLDMVNGKVKEKLENFGNE  380 (545)
T ss_pred             CCceeEECCCCCcEEEEEECCCCCCCceEEEEcCCceEeecCCccccCCeEEEEEeccCCCccccccccccccccccCce
Confidence            77889999999999999999875556899999999999999999999999999999998876544333322223345689


Q ss_pred             EEEEEEeCCCCCeeEEEcccCCccCcccCCCCCCCCCceEEEeecCCCCCcCeEEEEEccCCCCCccceeeecCceeeEE
Q 015522          241 LYEMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIF  320 (405)
Q Consensus       241 l~R~~idl~~g~~~~~~L~~~~~EfP~In~~~~g~~yry~Y~~~~~~~~~~~~l~K~D~~t~~~~g~~~~~~~~~~~~~~  320 (405)
                      |+|||||+++|+++++.|++.++|||+||++|.||+|||+|++..++...+++|+|+|+++++.+|+.+.+.+++..+.|
T Consensus       381 l~r~ridl~tg~~~~~~l~~~~~EfP~In~~~~Grk~ry~Y~~~~~~~~~~~gl~K~D~~t~~~~g~~~~~~~~~~~~~~  460 (545)
T PLN02491        381 LYEMRFNMKTGAASQKKLSASAVDFPRVNESYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPETGKKKLEVGGNVKGIF  460 (545)
T ss_pred             EEEEEEECCCCceeeeccCCcccccCccCHHHCCCcccEEEEeccCCccCcCeEEEEEecccccCCccccccccceeEEE
Confidence            99999999999999999999999999999999999999999998776667899999999974333433222234445679


Q ss_pred             EcCCCccccceEEeeCCCCCCCCCCCeEEEEEEEeCCCCceEEEEEeCCCCCCCceEEEEcCCcCCCCCCccCcChhhHH
Q 015522          321 DLGPGRFGSEAVFVPREPGTSSEEDVGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVSEEQLE  400 (405)
Q Consensus       321 ~~~~~~~~~EPvFVPrp~~~~~~EDDG~LLs~v~d~~~~~s~LlILDA~~l~~gpvAr~~Lp~~iP~gfHG~w~~~~~~~  400 (405)
                      |+++++|+|||+||||+++.+.+|||||||++|+|..+++|+|+||||++|++|||||++||++||+||||+|+++++|.
T Consensus       461 ~~g~~~~~~EPvFVPr~~~~~~~EDDG~ll~~V~d~~~~~S~l~VlDAk~~~~~pVA~v~LP~rVP~GfHG~fv~~~~l~  540 (545)
T PLN02491        461 DLGPGRFGSEAIFVPREPGTTSEEDDGYLIFFVHDENTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVTEEQLQ  540 (545)
T ss_pred             EcCCCccccCCEEecCCCCCCcccCCcEEEEEEEcCCCCcceEEEEeCCCCCCCeeEEEECCCCCCCCccccCcCHHHHH
Confidence            99999999999999997541258999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcC
Q 015522          401 EQAKL  405 (405)
Q Consensus       401 ~~~~~  405 (405)
                      +|+.+
T Consensus       541 ~~~~~  545 (545)
T PLN02491        541 EQAKL  545 (545)
T ss_pred             HhhcC
Confidence            98654

>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED	Back alignment and domain information

>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection	Back alignment and domain information

>PLN02969 9-cis-epoxycarotenoid dioxygenase	Back alignment and domain information

>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		405
3npe_A		529	Structure Of Vp14 In Complex With Oxygen Length = 5		4e-72
2biw_A		490	Crystal Structure Of Apocarotenoid Cleavage Oxygena		3e-25

>pdb|3NPE|A Chain A, Structure Of Vp14 In Complex With Oxygen Length = 529

Back alignment and structure

Iteration: 1

Score = 268 bits (685), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 155/410 (37%), Positives = 228/410 (55%), Gaps = 30/410 (7%) Query: 3 IGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVL 62 IG+L G G+ + + RA ++D S G G AN LVY +G+LLA+SE D PY V+V Sbjct: 140 IGELHGHSGIARLALFYARAACGLVDPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVA 199 Query: 63 EDGDLQTLGMLDYDKRLQHSFTAHPKVDPYTGEMFTFGY-AHTPPYITYRVISKDGFMHD 121 +DGDL+T+G D+D +L + AHPK+DP TGE+ Y PY+ Y DG D Sbjct: 200 DDGDLETVGRYDFDGQLGCAMIAHPKLDPATGELHALSYDVIKRPYLKYFYFRPDGTKSD 259 Query: 122 PVPITVSDPIMMHDFAITENYAIFMDLPLYFRPKEMVKENKLIFTFDDTKKARFGILPRY 181 V I + P M+HDFAITEN + D + F+ +EM++ + D K +RFG+LP++ Sbjct: 260 DVEIPLEQPTMIHDFAITENLVVVPDHQVVFKLQEMLRGGSPV-VLDAAKTSRFGVLPKH 318 Query: 182 AKNEAQMKWFELPNCFIFHNANAWEEE--DEVVLITCRLDKPDLDMVNGAVKEKLENFSN 239 A + ++M W ++P+CF FH NAWE+E EVV+I + D E E + Sbjct: 319 AADASEMAWVDVPDCFCFHLWNAWEDEATGEVVVIGSCMTPAD-----SIFNESDERLES 373 Query: 240 ELYEMRFNLKTGLASQKRLSASA----VDFPRVNECYTGRKQRYVYGTILDSIAKVTGII 295 L E+R + +TG ++++ + + ++ VN GR+ RY Y + + KV+G Sbjct: 374 VLTEIRLDARTGRSTRRAVLPPSQQVNLEVGMVNRNLLGRETRYAYLAVAEPWPKVSGFA 433 Query: 296 KFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSE--EDVGYLIFFS 353 K DL E TK F+ G GRFG E FVP +P + ED GY++ F Sbjct: 434 KVDLST---GELTK----------FEYGEGRFGGEPCFVPMDPAAAHPRGEDDGYVLTFV 480 Query: 354 HDEKTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVSEEQLEEQA 403 HDE+ G S + V++A M + A V+LP RVP+GFH F++ ++LE QA Sbjct: 481 HDERAGTSELLVVNAADMRLE--ATVQLPSRVPFGFHGTFITGQELEAQA 528

PyMOL of 3npe

>pdb|2BIW|A Chain A, Crystal Structure Of Apocarotenoid Cleavage Oxygenase From Synechocystis, Native Enzyme Length = 490

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		405
3npe_A		529	9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti;	1e-127
2biw_A		490	Apocarotenoid-cleaving oxygenase; non-heme iron, c	1e-122
3kvc_A		533	Retinoid isomerohydrolase; 7-bladed beta-propeller	9e-85
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays} Length = 529	Back alignment and structure

 Score =  375 bits (963), Expect = e-127
 Identities = 148/408 (36%), Positives = 219/408 (53%), Gaps = 26/408 (6%)

Query: 3   IGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVL 62
           IG+L G  G+  + +   RA   ++D S G G AN  LVY +G+LLA+SE D PY V+V 
Sbjct: 140 IGELHGHSGIARLALFYARAACGLVDPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVA 199

Query: 63  EDGDLQTLGMLDYDKRLQHSFTAHPKVDPYTGEMFTFGYAHTP-PYITYRVISKDGFMHD 121
           +DGDL+T+G  D+D +L  +  AHPK+DP TGE+    Y     PY+ Y     DG   D
Sbjct: 200 DDGDLETVGRYDFDGQLGCAMIAHPKLDPATGELHALSYDVIKRPYLKYFYFRPDGTKSD 259

Query: 122 PVPITVSDPIMMHDFAITENYAIFMDLPLYFRPKEMVKENKLIFTFDDTKKARFGILPRY 181
            V I +  P M+HDFAITEN  +  D  + F+ +EM++        D  K +RFG+LP++
Sbjct: 260 DVEIPLEQPTMIHDFAITENLVVVPDHQVVFKLQEMLR-GGSPVVLDAAKTSRFGVLPKH 318

Query: 182 AKNEAQMKWFELPNCFIFHNANAWEEEDEVVLITCRLDKPDLDMVNGAVKEKLENFSNEL 241
           A + ++M W ++P+CF FH  NAWE+E    ++         D +     E  E   + L
Sbjct: 319 AADASEMAWVDVPDCFCFHLWNAWEDEATGEVVVIGSCMTPADSIFN---ESDERLESVL 375

Query: 242 YEMRFNLKTGLASQKRLSASA----VDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKF 297
            E+R + +TG ++++ +   +    ++   VN    GR+ RY Y  + +   KV+G  K 
Sbjct: 376 TEIRLDARTGRSTRRAVLPPSQQVNLEVGMVNRNLLGRETRYAYLAVAEPWPKVSGFAKV 435

Query: 298 DLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGT--SSEEDVGYLIFFSHD 355
           DL                    F+ G GRFG E  FVP +P       ED GY++ F HD
Sbjct: 436 DLST-------------GELTKFEYGEGRFGGEPCFVPMDPAAAHPRGEDDGYVLTFVHD 482

Query: 356 EKTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVSEEQLEEQA 403
           E+ G S + V++A  M     A V+LP RVP+GFH  F++ ++LE QA
Sbjct: 483 ERAGTSELLVVNAADMR--LEATVQLPSRVPFGFHGTFITGQELEAQA 528

PyMOL of 3npe

>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A* Length = 490	Back alignment and structure

>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A Length = 533	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		405
3npe_A		529	9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti;	100.0
2biw_A		490	Apocarotenoid-cleaving oxygenase; non-heme iron, c	100.0
3kvc_A		533	Retinoid isomerohydrolase; 7-bladed beta-propeller	100.0

>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays}	Back alignment and structure

Probab=100.00  E-value=4.5e-96  Score=763.19  Aligned_cols=379  Identities=40%  Similarity=0.722  Sum_probs=340.3

Q ss_pred             cccccchhHHHHHHHHHHHHHhcccccCCCCCcceeEEEEECCEEEEEEcCCccEEEEcCCCCCccccceeccccccCCC
Q 015522            3 IGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMLDYDKRLQHS   82 (405)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~ANt~V~~~~g~llAl~E~g~P~~ld~~~~~tLeT~g~~d~~~~l~~~   82 (405)
                      ++++.+.+++....+...|..+++++...++|+|||||++|+||||||||+|.||++++||+.||||+|.+||+|+|+.+
T Consensus       140 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ANtnvv~~~g~llAl~E~g~Py~~~idp~~tLeT~G~~d~~g~l~~~  219 (529)
T 3npe_A          140 IGELHGHSGIARLALFYARAACGLVDPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDLETVGRYDFDGQLGCA  219 (529)
T ss_dssp             TTTTTSSTHHHHHHHHHHHHHTTSCCGGGCCCCCCSCEEEETTEEEECCTTSCCEEEEECTTSCEEEEEECCGGGCCCSC
T ss_pred             cccccccchhhhhhhhhhhcccccccccccCCCCeEEEEEECCEEEEEEcCCCceEEecCCCCCcceeeeeccCCccCCc
Confidence            67788888899999888999999888777789999999999999999999999999977664599999999999999999


Q ss_pred             CCCCceeeCCCCcEEEEEecCC-CCeEEEEEEcCCCCeeeeEEEEeCCCcceeeeeecCCEEEEEeCCcccChHHHhhcC
Q 015522           83 FTAHPKVDPYTGEMFTFGYAHT-PPYITYRVISKDGFMHDPVPITVSDPIMMHDFAITENYAIFMDLPLYFRPKEMVKEN  161 (405)
Q Consensus        83 ftAHP~~Dp~tG~~~~fg~~~~-~~~~~~~~~~~~g~~~~~~~~~~p~~~~iHdf~vTeny~V~~~~P~~~~~~~~l~~~  161 (405)
                      ||||||+||+|||+++|+++.. .|++.|++++++|++.+.+++++|.++|||||+|||||+||+++|+.+|+.+|+. |
T Consensus       220 ~tAHPk~Dp~TGel~~f~y~~~~~p~~~~~~~~~~G~~~~~~~i~~~~p~~~HDFaiTenyvVf~~~Pl~~~~~~~~~-g  298 (529)
T 3npe_A          220 MIAHPKLDPATGELHALSYDVIKRPYLKYFYFRPDGTKSDDVEIPLEQPTMIHDFAITENLVVVPDHQVVFKLQEMLR-G  298 (529)
T ss_dssp             CCSCCEECTTTCCEEEEECCSSSSCCCEEEEECTTCCBCCCEECCCSSCBCCCCCEECSSEEEEEECSEEECGGGGTT-T
T ss_pred             ccccCcCCCCCCcEEEEEeecCCCCcEEEEEECCCCCEEEEEEEeCCCCceEeeEEecCCeEEEEeCCeEEcHHHHhC-C
Confidence            9999999999999999999864 5899999999999998888889999999999999999999999999999999975 6


Q ss_pred             CceeEEcCCCCcEEEEEeCCCCCCCceEEEEcCCeeEEecccceecC--CeEEEEEEecCCCCccccchhhhhhcccccc
Q 015522          162 KLIFTFDDTKKARFGILPRYAKNEAQMKWFELPNCFIFHNANAWEEE--DEVVLITCRLDKPDLDMVNGAVKEKLENFSN  239 (405)
Q Consensus       162 ~~~~~w~~~~~t~~~vipR~~~~~~~v~~~~~~~~f~fH~~NAyE~~--~~ivvd~~~~~~~~~~~~~~~~~~~~~~~~~  239 (405)
                      +.++.|+|++++||+||||++++...++||++|+||+||++|||||+  |+||+|.|++.+.+. .+.    .......+
T Consensus       299 ~~~~~~~p~~~tr~~VipR~~~~~~~vrw~e~~~~f~fH~~NA~Ee~~~~~ivv~~~~~~~~~~-~~~----~~~~~~~~  373 (529)
T 3npe_A          299 GSPVVLDAAKTSRFGVLPKHAADASEMAWVDVPDCFCFHLWNAWEDEATGEVVVIGSCMTPADS-IFN----ESDERLES  373 (529)
T ss_dssp             CCSEEECTTSCCEEEEEETTCSSGGGCEEEECTTCEEEEEEEEEEETTTTEEEEEEEEECCCCC-SCC----SSSSCCCC
T ss_pred             CCceEECCCCCcEEEEEECCCCCCCceEEEEcCCEEEEEecccEecCCCCeEEEEEecccCchh-hhh----ccchhhcc
Confidence            78999999999999999999865568999999999999999999974  689998888755331 111    11234568


Q ss_pred             cEEEEEEeCCCCCeeEEEcc----cCCccCcccCCCCCCCCCceEEEeecCCCCCcCeEEEEEccCCCCCccceeeecCc
Q 015522          240 ELYEMRFNLKTGLASQKRLS----ASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGN  315 (405)
Q Consensus       240 ~l~R~~idl~~g~~~~~~L~----~~~~EfP~In~~~~g~~yry~Y~~~~~~~~~~~~l~K~D~~t~~~~g~~~~~~~~~  315 (405)
                      .|+||+||+.+|+++++.|.    +.++|||+||++|.||+|||+|+++.++...+++|+|+|++|+    +        
T Consensus       374 ~l~r~rl~l~~g~~~~~~l~~~~~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~~~~~~~~l~K~D~~tg----~--------  441 (529)
T 3npe_A          374 VLTEIRLDARTGRSTRRAVLPPSQQVNLEVGMVNRNLLGRETRYAYLAVAEPWPKVSGFAKVDLSTG----E--------  441 (529)
T ss_dssp             EEEEEEECTTTCCEEEEESSCSSSCCCEEEEEECGGGTTSCCSEEEEEECCSTTSCCEEEEEETTTC----C--------
T ss_pred             ceEEEEEcCCCCCEEeEEecccccCccccCceEChhHcCCccceEEEeccCCCCCcceEEEEecCCC----c--------
Confidence            99999999999999888887    4889999999999999999999998876667899999999974    3        


Q ss_pred             eeeEEEcCCCccccceEEeeCCC----CCCCCCCCeEEEEEEEeCCCCceEEEEEeCCCCCCCceEEEEcCCcCCCCCCc
Q 015522          316 VRGIFDLGPGRFGSEAVFVPREP----GTSSEEDVGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHA  391 (405)
Q Consensus       316 ~~~~~~~~~~~~~~EPvFVPrp~----~~~~~EDDG~LLs~v~d~~~~~s~LlILDA~~l~~gpvAr~~Lp~~iP~gfHG  391 (405)
                       .+.||+++++++|||||||||+    +  ++|||||||++|+|..+++|+|+||||++|+  +|||++||++||+||||
T Consensus       442 -~~~~~~g~~~~~~EPvFVPrp~~~~~~--~~EDDG~lLs~V~d~~~~~S~LlILDA~~l~--~vArv~LP~rvP~GfHG  516 (529)
T 3npe_A          442 -LTKFEYGEGRFGGEPCFVPMDPAAAHP--RGEDDGYVLTFVHDERAGTSELLVVNAADMR--LEATVQLPSRVPFGFHG  516 (529)
T ss_dssp             -EEEEECCTTBCCCCCEEEECCSCSSSS--CCTTCEEEEEEEEBSSCCCEEEEEEETTTTE--EEEEEEESSCCCCCSCE
T ss_pred             -eEEEEcCCCccccCCEeeeCCCCCCCC--CCCCCcEEEEEEEECCCCcEEEEEEeCCCCc--cceEEECCCCCCCCccc
Confidence             2469999999999999999997    5  7899999999999999999999999999998  69999999999999999


Q ss_pred             cCcChhhHHHhhc
Q 015522          392 FFVSEEQLEEQAK  404 (405)
Q Consensus       392 ~w~~~~~~~~~~~  404 (405)
                      +|+++++|++|++
T Consensus       517 ~wv~~~~l~~q~~  529 (529)
T 3npe_A          517 TFITGQELEAQAA  529 (529)
T ss_dssp             EEEEHHHHTTCCC
T ss_pred             cccCHHHhhhhhC
Confidence            9999999999864

PyMOL of 3npe

>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A*	Back alignment and structure

>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A 4f2z_A 4f30_A 4f3a_A 4f3d_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00