Citrus Sinensis ID: 015530


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-----
MYGLIKFLVSCRKLIVITIMRICMQLFKSPISHFVMFSYFPFMQVMDKSNFKITTDEEIDVALSGQYLLHLPITVNESKLDKKLLKRYFEEHHHDHLPDFADKYVIFRRGIGVDQTTDYFFMEKVDMLIGRFWSFLMRRTGLEKLLSRRSKRRHKPDPKKDDEINSETEQNDLSVERHRLENMELSFRNLLGKVTIQEPTFDRIIVLYRQASTKSKAERGVYLKHFRNIPMADMEIVLPEKKNPGLTPLDWVKFLVSAVVGLVAVITSAQLHEIDLWVGMAILSTVIGYCAKTYFTFQQNMAAYQNMITQSMYDKQLDSGKGTLLHLCDDVIQQEVKEVIISFFILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARVRLPGVPHITHHG
cHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHccHHHHHHHHcccccccHHHHHHHHcccccccccccccccccHHHHHHHHHHHccccccHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEccHHHHHHHHHHHHHcccccccccccEEEEEEEcccccccccccEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccEEEcHHHHHHHHHHcccEEEEcccccccccccc
cccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccEEccHHHHHHHHcccEEEEccEEEcHHHHHHHHHHHHHHHcccccccccccEEEEEEcccccccccccEHHHHHHHHHHHHHHHHHHHccHHHHHHcccccccccccccccccccHHcHccccccHHHHHHHHHHHHHHccccEEccccccEEEEEEEcccccccccccEEEEEEcccccccccEEccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccEcccHHHHHHHHHHcccEEEEEccccccEcccc
MYGLIKFLVSCRKLIVITIMRICMQLfkspishfvmfsyfpfmqvmdksnfkittdeEIDVALSGQYLLHLPITVNESKLDKKLLKRYFEEhhhdhlpdfadkYVIFRrgigvdqttdYFFMEKVDMLIGRFWSFLMRRTGLEKLLSrrskrrhkpdpkkddeinseteqnDLSVERHRLENMELSFRNLLGKVTIQEPTFDRIIVLYRQastkskaerGVYLkhfrnipmadmeivlpekknpgltpldWVKFLVSAVVGLVAVITSAQLHEIDLWVGMAILSTVIGYCAKTYFTFQQNMAAYQNMITQSmydkqldsgkgtlLHLCDDVIQQEVKEVIISFFILMEQGKATRQDLDLRCEELIKEefgescnfdvDDAVHKLEKLGIVArvrlpgvphithhg
MYGLIKFLVSCRKLIVITIMRICMQLFKSPISHFVMFSYFPFMQVMDKSNFKITTDEEIDVALSGQYLLHLPITVNESKLDKKLLKRYFEEHHhdhlpdfadkYVIFRRGIGVDQTTDYFFMEKVDMLIGRFWSFLMRRTGLEkllsrrskrrhkpdpkkddeinseteqndlsverHRLENMELSFRNLLGKVTIQEPTFDRIIVLYrqastkskaergvYLKHFRNIPMADMEIVLPEKKNPGLTPLDWVKFLVSAVVGLVAVITSAQLHEIDLWVGMAILSTVIGYCAKTYFTFQQNMAAYQNMITQSMYDKQLDSGKGTLLHLCDDVIQQEVKEVIISFFILMEQGKATRQDLDLRCEELIKEEfgescnfdVDDAVHKLEKLgivarvrlpgvphithhg
MYGLIKFLVSCRKLIVITIMRICMQLFKSPISHFVMFSYFPFMQVMDKSNFKITTDEEIDVALSGQYLLHLPITVNESKLDKKLLKRYFEEHHHDHLPDFADKYVIFRRGIGVDQTTDYFFMEKVDMLIGRFWSFLMRRTGLEkllsrrskrrhkpdpkkddEINSETEQNDLSVERHRLENMELSFRNLLGKVTIQEPTFDRIIVLYRQASTKSKAERGVYLKHFRNIPMADMEIVLPEKKNPGLTPLDWVKFLVSAVVGLVAVITSAQLHEIDLWVGMAILSTVIGYCAKTYFTFQQNMAAYQNMITQSMYDKQLDSGKGTLLHLCDDVIQQEVKEVIISFFILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARVRLPGVPHITHHG
*YGLIKFLVSCRKLIVITIMRICMQLFKSPISHFVMFSYFPFMQVMDKSNFKITTDEEIDVALSGQYLLHLPITVNESKLDKKLLKRYFEEHHHDHLPDFADKYVIFRRGIGVDQTTDYFFMEKVDMLIGRFWSFLMRRTGLE****************************************ELSFRNLLGKVTIQEPTFDRIIVLYRQASTKSKAERGVYLKHFRNIPMADMEIVLPEKKNPGLTPLDWVKFLVSAVVGLVAVITSAQLHEIDLWVGMAILSTVIGYCAKTYFTFQQNMAAYQNMITQSMYDKQLDSGKGTLLHLCDDVIQQEVKEVIISFFILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARVRLPGVPH*****
*******LVSCRKLIVITI*****************FSYFPFMQVMDKSNFKITTDEEIDVALSGQYLLHLPITVNESKLDKKLLKRYFEEHHHDHLPDFADKYVIFRRGIGVDQTTDYFFMEKVDMLIGRFWSFLMRRTGLEKL*******************NSETEQNDLSVERHRLENMELSFRNLLGKVTIQEPTFDRIIVLYR***********VYLKHFRNIPMADMEIVLPEKKNPGLTPLDWVKFLVSAVVGLVAVITSAQLHEIDLWVGMAILSTVIGYCAKTYFTFQQNMAAYQNMITQSMYDKQLDSGKGTLLHLCDDVIQQEVKEVIISFFILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARVRLPGVP******
MYGLIKFLVSCRKLIVITIMRICMQLFKSPISHFVMFSYFPFMQVMDKSNFKITTDEEIDVALSGQYLLHLPITVNESKLDKKLLKRYFEEHHHDHLPDFADKYVIFRRGIGVDQTTDYFFMEKVDMLIGRFWSFLMRRTGLEKLLS************************DLSVERHRLENMELSFRNLLGKVTIQEPTFDRIIVLYRQASTKSKAERGVYLKHFRNIPMADMEIVLPEKKNPGLTPLDWVKFLVSAVVGLVAVITSAQLHEIDLWVGMAILSTVIGYCAKTYFTFQQNMAAYQNMITQSMYDKQLDSGKGTLLHLCDDVIQQEVKEVIISFFILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARVRLPGVPHITHHG
MYGLIKFLVSCRKLIVITIMRICMQLFKSPISHFVMFSYFPFMQVMDKSNFKITTDEEIDVALSGQYLLHLPITVNESKLDKKLLKRYFEEHHHDHLPDFADKYVIFRRGIGVDQTTDYFFMEKVDMLIGRFWSFLMRRTGLEKLLSRR***************NSETEQNDLSVERHRLENMELSFRNLLGKVTIQEPTFDRIIVLYRQASTKSKAERGVYLKHFRNIPMADMEIVLPEKKNPGLTPLDWVKFLVSAVVGLVAVITSAQLHEIDLWVGMAILSTVIGYCAKTYFTFQQNMAAYQNMITQSMYDKQLDSGKGTLLHLCDDVIQQEVKEVIISFFILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARVRLPGVPH*****
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iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MYGLIKFLVSCRKLIVITIMRICMQLFKSPISHFVMFSYFPFMQVMDKSNFKITTDEEIDVALSGQYLLHLPITVNESKLDKKLLKRYFEEHHHDHLPDFADKYVIFRRGIGVDQTTDYFFMEKVDMLIGRFWSFLMRRTGLEKLLSRRSKRRHKPDPKKDDEINSETEQNDLSVERHRLENMELSFRNLLGKVTIQEPTFDRIIVLYRQASTKSKAERGVYLKHFRNIPMADMEIVLPEKKNPGLTPLDWVKFLVSAVVGLVAVITSAQLHEIDLWVGMAILSTVIGYCAKTYFTFQQNMAAYQNMITQSMYDKQLDSGKGTLLHLCDDVIQQEVKEVIISFFILxxxxxxxxxxxxxxxxxxxxxEFGESCNFDVDDAVHKLEKLGIVARVRLPGVPHITHHG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query405
224069647486 predicted protein [Populus trichocarpa] 0.861 0.718 0.816 1e-168
356571641492 PREDICTED: uncharacterized protein LOC10 0.866 0.713 0.811 1e-167
356561156492 PREDICTED: uncharacterized protein LOC10 0.866 0.713 0.809 1e-166
255543525 555 conserved hypothetical protein [Ricinus 0.866 0.632 0.786 1e-162
224128788487 predicted protein [Populus trichocarpa] 0.866 0.720 0.766 1e-160
449455934483 PREDICTED: uncharacterized protein LOC10 0.864 0.724 0.774 1e-160
15230351487 uncharacterized protein [Arabidopsis tha 0.861 0.716 0.765 1e-160
225451627492 PREDICTED: uncharacterized protein LOC10 0.879 0.723 0.772 1e-157
11994456 516 unnamed protein product [Arabidopsis tha 0.861 0.676 0.706 1e-155
356502257489 PREDICTED: uncharacterized protein LOC10 0.864 0.715 0.759 1e-154
>gi|224069647|ref|XP_002303016.1| predicted protein [Populus trichocarpa] gi|222844742|gb|EEE82289.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  597 bits (1538), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 285/349 (81%), Positives = 316/349 (90%)

Query: 44  QVMDKSNFKITTDEEIDVALSGQYLLHLPITVNESKLDKKLLKRYFEEHHHDHLPDFADK 103
           QVMDKSNFKITTDEEIDVALSGQYLL+LPI V+ESKLDKKLLK YF +H  ++LPDFADK
Sbjct: 102 QVMDKSNFKITTDEEIDVALSGQYLLNLPIKVDESKLDKKLLKAYFNDHPRENLPDFADK 161

Query: 104 YVIFRRGIGVDQTTDYFFMEKVDMLIGRFWSFLMRRTGLEKLLSRRSKRRHKPDPKKDDE 163
           Y+IFRRGIG+D+TTDYFFMEKVDMLIGRFW FL+R T L+ + +R+S  + K D KKDD+
Sbjct: 162 YIIFRRGIGIDRTTDYFFMEKVDMLIGRFWGFLLRVTRLDIVFARKSSGQRKNDQKKDDD 221

Query: 164 INSETEQNDLSVERHRLENMELSFRNLLGKVTIQEPTFDRIIVLYRQASTKSKAERGVYL 223
           +NSE +Q+DL VER RLE M+LS  NLL K TIQEPTFDRIIV+YR A TKSK ERGVY+
Sbjct: 222 LNSEADQDDLFVERLRLEKMDLSVSNLLSKTTIQEPTFDRIIVVYRPAPTKSKTERGVYV 281

Query: 224 KHFRNIPMADMEIVLPEKKNPGLTPLDWVKFLVSAVVGLVAVITSAQLHEIDLWVGMAIL 283
           KHF+NIPMADMEIVLPEKKNPGLTP+DWVKFLVSAVVGLVAVI S ++ + DLWV  A+L
Sbjct: 282 KHFKNIPMADMEIVLPEKKNPGLTPMDWVKFLVSAVVGLVAVIGSVEMPKADLWVIFAVL 341

Query: 284 STVIGYCAKTYFTFQQNMAAYQNMITQSMYDKQLDSGKGTLLHLCDDVIQQEVKEVIISF 343
           STV+GYCAKTYFTFQQN+AAYQN+ITQSMYDKQLDSG+GTLLHLCDDVIQQEVKEVIISF
Sbjct: 342 STVVGYCAKTYFTFQQNLAAYQNLITQSMYDKQLDSGRGTLLHLCDDVIQQEVKEVIISF 401

Query: 344 FILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVAR 392
           FILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAV KLEKLGIVAR
Sbjct: 402 FILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVEKLEKLGIVAR 450




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571641|ref|XP_003553984.1| PREDICTED: uncharacterized protein LOC100819645 [Glycine max] Back     alignment and taxonomy information
>gi|356561156|ref|XP_003548851.1| PREDICTED: uncharacterized protein LOC100813179 [Glycine max] Back     alignment and taxonomy information
>gi|255543525|ref|XP_002512825.1| conserved hypothetical protein [Ricinus communis] gi|223547836|gb|EEF49328.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224128788|ref|XP_002320422.1| predicted protein [Populus trichocarpa] gi|222861195|gb|EEE98737.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449455934|ref|XP_004145705.1| PREDICTED: uncharacterized protein LOC101204725 [Cucumis sativus] Back     alignment and taxonomy information
>gi|15230351|ref|NP_188565.1| uncharacterized protein [Arabidopsis thaliana] gi|20260588|gb|AAM13192.1| unknown protein [Arabidopsis thaliana] gi|332642706|gb|AEE76227.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225451627|ref|XP_002275991.1| PREDICTED: uncharacterized protein LOC100241226 [Vitis vinifera] Back     alignment and taxonomy information
>gi|11994456|dbj|BAB02458.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356502257|ref|XP_003519936.1| PREDICTED: uncharacterized protein LOC100777206 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query405
TAIR|locus:2090639487 AT3G19340 [Arabidopsis thalian 0.861 0.716 0.733 8.3e-138
TAIR|locus:2159108809 AT5G13940 [Arabidopsis thalian 0.854 0.427 0.608 8.7e-115
TAIR|locus:505006322708 AT2G46915 "AT2G46915" [Arabido 0.516 0.295 0.267 1.2e-18
TAIR|locus:2090639 AT3G19340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1349 (479.9 bits), Expect = 8.3e-138, P = 8.3e-138
 Identities = 256/349 (73%), Positives = 303/349 (86%)

Query:    44 QVMDKSNFKITTDEEIDVALSGQYLLHLPITVNESKLDKKLLKRYFEEHHHDHLPDFADK 103
             QVM+KSNFKIT++EE++VA SGQYLL+LPI V+ESKLDKKLLKRYFEEH H+++PDF+DK
Sbjct:   103 QVMEKSNFKITSNEEMEVAHSGQYLLNLPIKVDESKLDKKLLKRYFEEHPHENIPDFSDK 162

Query:   104 YVIFRRGIGVDQTTDYFFMEKVDMLIGRFWSFLMRRTGLEXXXXXXXXXXXXXXXXXXXE 163
             YVIFRRGIG+D+TTDYFFMEK+D++I RFWSFLMR T LE                   E
Sbjct:   163 YVIFRRGIGLDKTTDYFFMEKLDVIISRFWSFLMRITRLEKLRAKRSSSLNKKDPKKDDE 222

Query:   164 INSETEQNDLSVERHRLENMELSFRNLLGKVTIQEPTFDRIIVLYRQASTKSKAERGVYL 223
              N +T+ ++L VER RLEN +LSF++ L K+TIQEPTFDR+IV+YR+AS+K+  ERG+Y+
Sbjct:   223 PNPDTDNDELYVERIRLENSKLSFKSFLSKLTIQEPTFDRMIVVYRRASSKTNLERGIYV 282

Query:   224 KHFRNIPMADMEIVLPEKKNPGLTPLDWVKFLVSAVVGLVAVITSAQLHEIDLWVGMAIL 283
             KHF+NIPMADMEIVLPEK+NPGLTP+DWVKFL+SAVVGLVAV+TS ++ + D WV +AIL
Sbjct:   283 KHFKNIPMADMEIVLPEKRNPGLTPMDWVKFLISAVVGLVAVLTSVEMPKSDPWVIIAIL 342

Query:   284 STVIGYCAKTYFTFQQNMAAYQNMITQSMYDKQLDSGKGTLLHLCDDVIQQEVKEVIISF 343
             STV+GYCAKTYFTFQQNMA YQN+ITQSMYDKQLDSG+GTLLHLCDDVIQQEVKEV+I F
Sbjct:   343 STVLGYCAKTYFTFQQNMATYQNLITQSMYDKQLDSGRGTLLHLCDDVIQQEVKEVMICF 402

Query:   344 FILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVAR 392
             +ILMEQGKAT +DLDLRCEELIKEEFG  CNFDV+DAV KLEKLGIVAR
Sbjct:   403 YILMEQGKATLEDLDLRCEELIKEEFGARCNFDVEDAVQKLEKLGIVAR 451




GO:0005886 "plasma membrane" evidence=IDA
GO:0005783 "endoplasmic reticulum" evidence=IDA
TAIR|locus:2159108 AT5G13940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006322 AT2G46915 "AT2G46915" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query405
pfam12576150 pfam12576, DUF3754, Protein of unknown function (D 2e-16
>gnl|CDD|221645 pfam12576, DUF3754, Protein of unknown function (DUF3754) Back     alignment and domain information
 Score = 75.5 bits (186), Expect = 2e-16
 Identities = 29/151 (19%), Positives = 62/151 (41%), Gaps = 30/151 (19%)

Query: 201 FDRIIVLYRQASTKSKAERG------------VYLKHFRNIPMADMEIVLPEKKNPGLTP 248
           F+R+++L R        ++             +YLK F+N+P AD+E++ P  +   +  
Sbjct: 1   FERVVLLIRFKDDDYFKKKAKKEKDKSFTPGKLYLKLFKNVPKADLEMLFPNTR-VSMRW 59

Query: 249 LDWVKFLVSAVVGLVAVITS-----------------AQLHEIDLWVGMAILSTVIGYCA 291
            D +   V A+ G +AV+                    +     L   ++ L  +  +  
Sbjct: 60  KDRLLIGVPAIGGGIAVVLKKLGAILLILSVSFFFWEGENIMPILIADLSALVALGTFAF 119

Query: 292 KTYFTFQQNMAAYQNMITQSMYDKQLDSGKG 322
           + +  ++     YQ ++T+++Y K L +  G
Sbjct: 120 RQWSNYKNKKIRYQKLVTKTLYFKNLANNAG 150


This domain family is found in bacteria, archaea and eukaryotes, and is typically between 135 and 166 amino acids in length. There is a single completely conserved residue P that may be functionally important. Length = 150

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 405
PF12576141 DUF3754: Protein of unknown function (DUF3754); In 100.0
PF11460104 DUF3007: Protein of unknown function (DUF3007); In 81.19
>PF12576 DUF3754: Protein of unknown function (DUF3754); InterPro: IPR022227 This domain family is found in bacteria, archaea and eukaryotes, and is typically between 135 and 166 amino acids in length Back     alignment and domain information
Probab=100.00  E-value=7.1e-35  Score=259.59  Aligned_cols=121  Identities=40%  Similarity=0.647  Sum_probs=108.3

Q ss_pred             cceEEEEEeeccccC--------------cCCCCeEEEeeCCCCCCCccccccCCCCCCCChhhHHHHHHHHHHHHHHHH
Q 015530          201 FDRIIVLYRQASTKS--------------KAERGVYLKHFRNIPMADMEIVLPEKKNPGLTPLDWVKFLVSAVVGLVAVI  266 (405)
Q Consensus       201 FkrVVvlyR~k~~k~--------------k~~~~l~LK~FkdIP~aDLE~llPekK~v~~~~~D~~~l~vsavvglvav~  266 (405)
                      ||||||+||.++++.              ..+++|+||+||||||+|||+||||+| |+|||+||+++++++++|+++++
T Consensus         1 f~~vvllyr~~~~~~~~~~~~~~~~~~~~~~~~~i~lK~FkdIP~aDLE~llP~~k-v~~~~~D~~~l~~~~vvg~v~~~   79 (141)
T PF12576_consen    1 FEEVVLLYRFKDSRKFKAKKESIQEAPKKFKPGPIYLKSFKDIPMADLEMLLPEKK-VRMRPFDRVKLGVSAVVGGVAVF   79 (141)
T ss_pred             CcEEEEEEEecccccchhhhhhhhhccccCCCCCeEEEEeCCCCccchhHhCCCCc-CCcCHHHHHHHHHHHHHHHHHHH
Confidence            899999999876432              126999999999999999999999998 89999999999999999999999


Q ss_pred             hhcccch----h--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchh
Q 015530          267 TSAQLHE----I--DLWVGMAILSTVIGYCAKTYFTFQQNMAAYQNMITQSMYDKQLDSGKG  322 (405)
Q Consensus       267 ~~l~~~~----~--~~~~i~a~ls~l~g~~~r~~~~y~~~~~rY~~~lt~~LY~K~l~sn~G  322 (405)
                      .++....    +  .++..+++++++++||+|+|++|+|+|.+||+++|++|||||+|||+|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~ry~~~l~~~LY~K~l~sn~G  141 (141)
T PF12576_consen   80 VKLVGMSLLLLSDIFLILILSLLSALGGYAFRQYTGYKNNRARYQLLLTKTLYFKNLDSNRG  141 (141)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            8755443    2  256677888889999999999999999999999999999999999998



There is a single completely conserved residue P that may be functionally important.

>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query405
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 49.9 bits (118), Expect = 1e-06
 Identities = 73/471 (15%), Positives = 141/471 (29%), Gaps = 149/471 (31%)

Query: 24  MQL-FKSPISHFV--MFSYFPFMQVMDKSNFKITTDEEIDV------ALSGQYLLHLPIT 74
            Q  +K  +S F       F    V D     I + EEID       A+SG   L     
Sbjct: 14  HQYQYKDILSVFEDAFVDNFDCKDVQDMPK-SILSKEEIDHIIMSKDAVSGTLRL---FW 69

Query: 75  VNESKLDKKLLKRYFEEHHHDHLPDFADKYVIFRRGIGVDQTTDYFFMEKVDML------ 128
              SK  +++++++ EE    +           +R   +       ++E+ D L      
Sbjct: 70  TLLSK-QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM---YIEQRDRLYNDNQV 125

Query: 129 -----IGRFWSFLMRRTGLEKL------------------LSRRSKRRHKPDPKKDDEI- 164
                + R   +L  R  L +L                  ++      +K   K D +I 
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185

Query: 165 -------NSETE----QNDLSVE---------------RHRLENMELSFRNLLGKVTIQE 198
                  NS          L  +               + R+ +++   R LL     + 
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL-----KS 240

Query: 199 PTFDR-IIVLYRQASTKSKAERGVY----LKHF----------RNIPMADM-------EI 236
             ++  ++VL             V        F          R   + D         I
Sbjct: 241 KPYENCLLVL-----------LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289

Query: 237 VLPEKKNPGLTPLDWVKFLVSAVVGLVAVITSAQLHEID-LWVGMAILSTVIGYCAKTYF 295
            L +  +  LTP D VK L+   +         ++   +   + +      I        
Sbjct: 290 SL-DHHSMTLTP-DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI------IA------- 334

Query: 296 TFQQNMAAYQNMITQSMYDKQLDSGK-GTLLHLCDDVIQ-QEVKEVIISFFILMEQGKAT 353
                  + ++ +      K ++  K  T++    +V++  E +++     +        
Sbjct: 335 ------ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388

Query: 354 RQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVAR------VRLPGV 398
              L L   ++IK         DV   V+KL K  +V +      + +P +
Sbjct: 389 TILLSLIWFDVIKS--------DVMVVVNKLHKYSLVEKQPKESTISIPSI 431


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00