Citrus Sinensis ID: 015536

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-----
MRENGHASPSSQSKDSVIEGTSNTNFVTNAERNSLPCLVKIYDCPESELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFIEDELVHLPPEKVPRLHCLIHRKLDVNDFLHSSPMMEPKPQLVKETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSNIVPADLVIPFQPSSAASFEVVPAETLEAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKELERLRRERLK
ccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccEEEEEEEEEcccccccccccccccccccHHHHHcccccccccEEEEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHccEEEEEcccHHHHHccccccccccccccccccccccccccEEEEEccccccccccHHHHHHHHHHHHHHHHcEEEEEEEcccEEEEEEccEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHc
ccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccEEEEEEEEEcccccccccccccccHHHHHHHHHcccccccccEEEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccEEEEccccccccHHHHHHHHHHHHHHHccccEEEcEcHHHHcccccccccccccccccccEEEcccccEEEEEccccccccccHHHHHHHHHHHHHHHHcccEEccccEEEEEccccEEEEEEccccccccccEEEEccccccccHccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcc
mrenghaspssqskdsviegtsntnfvtnaernslpclvkiydcpeselkLNEVFEFVGVltldsdvmadkndqdessygfiedelvhlppekvprlhclihrkldvndflhsspmmepkpqlVKETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGklslnltclskesvsvfgnQVRLSvqnllpftqcipltvnylntaslapkkdyqtnrlipgvlqladgshliidetqletgtlnstGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSegksnivpadlvipfqpssaasfevvpaETLEAWRWYLASVRslphsiesDMQKVVESDLVAARQAdrslggqdLSRLLTMGRlmsasfgetslSLEHWQMVKELERLRRERLK
mrenghaspssqskdsvieGTSNTnfvtnaernslPCLVKIYDCPESELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFIEDELVHLPPEKVPRLHCLIHRKLDVNDFLHSSPMMEPKPQLVKETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDETqletgtlnstGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSNIVPADLVIPFQPSSAASFEVVPAETLEAWRWYLASVRSLPHSIESDMQKVVESDLVAArqadrslggqdlSRLLTMGRLMSASfgetslslehwqMVKELERLRRERLK
MRENGHASPSSQSKDSVIEGTSNTNFVTNAERNSLPCLVKIYDCPESELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFIEDELVHLPPEKVPRLHCLIHRKLDVNDFLHSSPMMEPKPQLVKETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSNIVPADLVIPFQPSSAASFEVVPAETLEAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKelerlrrerlK
*************************FVTNAERNSLPCLVKIYDCPESELKLNEVFEFVGVLTLDSDVM**********YGFIEDELVHLPPEKVPRLHCLIHRKLDVNDFLH*****************SLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSNIVPADLVIPFQPSSAASFEVVPAETLEAWRWYLASVRSLP********************************LLTMGRL**********SLEHWQ**************
*******************************RNSLPCLVKIYDCPESELKLNEVFEFVGVLTLDSDV********************HLPPEKVPRLHCLIHRKLDVNDFLHSSPM*EPKPQLVKETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSNIVPADLVIPFQPS********PAETLEAWRWYLASVRSLPHSIESDMQKVVESDLVA***A*****GQDLSRLLTMGRLMSASFGETSLSLEHWQMVKELERLRRER**
******************EGTSNTNFVTNAERNSLPCLVKIYDCPESELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFIEDELVHLPPEKVPRLHCLIHRKLDVNDFLHSSPMMEPKPQLVKETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSNIVPADLVIPFQPSSAASFEVVPAETLEAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKELERLRRERLK
**********************NTNFVTNAERNSLPCLVKIYDCPESELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFIEDELVHLPPEKVPRLHCLIHRKLDVNDFLHSSPMMEPKPQLVKETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSNIVPADLVIPFQPSSAASFEVVPAETLEAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKELERLRRE***
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MRENGHASPSSQSKDSVIEGTSNTNFVTNAERNSLPCLVKIYDCPESELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFIEDELVHLPPEKVPRLHCLIHRKLDVNDFLHSSPMMEPKPQLVKETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSNIVPADLVIPFQPSSAASFEVVPAETLEAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKELERLRRERLK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query405 2.2.26 [Sep-21-2011]
Q501D5589 Mini-chromosome maintenan yes no 0.972 0.668 0.660 1e-149
B5DG51626 Mini-chromosome maintenan N/A no 0.948 0.613 0.356 6e-59
Q803A6631 Mini-chromosome maintenan yes no 0.925 0.594 0.368 3e-58
Q5ZJV4633 Mini-chromosome maintenan yes no 0.925 0.592 0.352 2e-57
Q28DV7627 Mini-chromosome maintenan yes no 0.960 0.620 0.337 3e-57
Q9BTE3642 Mini-chromosome maintenan yes no 0.906 0.571 0.353 1e-54
A5PJM5642 Mini-chromosome maintenan yes no 0.918 0.579 0.347 1e-54
B1H268642 Mini-chromosome maintenan yes no 0.918 0.579 0.355 2e-54
Q8R3C0642 Mini-chromosome maintenan yes no 0.918 0.579 0.350 1e-53
Q9VM60605 Mini-chromosome maintenan yes no 0.953 0.638 0.307 3e-51
>sp|Q501D5|MCMBP_ARATH Mini-chromosome maintenance complex-binding protein OS=Arabidopsis thaliana GN=ETG1 PE=1 SV=1 Back     alignment and function desciption
 Score =  529 bits (1362), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 263/398 (66%), Positives = 317/398 (79%), Gaps = 4/398 (1%)

Query: 10  SSQSKDSVIEGTSNTNFVTNAERNSLPCLVKIYDCPESELKLNEVFEFVGVLTLDSDVMA 69
           +S + +S +  TS     T+A+  SLPCLVKIYD PES+LKLN+V EF+GVLT D  VM 
Sbjct: 194 TSSASESQVPQTSGIPPATSAD--SLPCLVKIYDSPESDLKLNDVVEFLGVLTFDPIVMM 251

Query: 70  DKNDQDESSYGFIEDELVHLPPEKVPRLHCLIHRKLDVNDFLHSSPMM-EPK-PQLVKET 127
           D +  DE+S    E E V +P  KVPRLHCLIHRKL+   FLH S ++ EPK PQ+ KE 
Sbjct: 252 DTDTLDENSDALSEAESVQMPSGKVPRLHCLIHRKLETQHFLHGSSLLPEPKSPQIFKEI 311

Query: 128 RESLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQ 187
           RESL+++LT +LGND IAA  +LLHLLS+VH R+DNVAVGKLSLNL  L+KES+S+FG Q
Sbjct: 312 RESLMKYLTGLLGNDHIAAQFLLLHLLSKVHGRVDNVAVGKLSLNLIHLNKESMSIFGTQ 371

Query: 188 VRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDETQLET 247
           +  ++++LLPFTQ IPLT+ YLNTAS  PKKDY  NRL+PGVLQ+ADG+HLI+DET+L+ 
Sbjct: 372 LSGALKSLLPFTQSIPLTIEYLNTASFGPKKDYGINRLMPGVLQIADGTHLILDETELQP 431

Query: 248 GTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSNIVPADLVIPFQ 307
           GTLNS GVENA LLKNL+E QKVEY+F+YYKMEM  DVQMLI SEGKSNI+PADLV+P Q
Sbjct: 432 GTLNSVGVENANLLKNLLECQKVEYDFQYYKMEMATDVQMLIFSEGKSNIMPADLVLPLQ 491

Query: 308 PSSAASFEVVPAETLEAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLS 367
           PS   S EV+  ET E WR YLA+ +SL HSI  ++Q+VVE+DLVAARQ DRSLG QDLS
Sbjct: 492 PSQVNSLEVITPETAETWRCYLATCKSLSHSIGQELQQVVENDLVAARQTDRSLGSQDLS 551

Query: 368 RLLTMGRLMSASFGETSLSLEHWQMVKELERLRRERLK 405
           RLLTM R+MS S+GET+LSLEHWQMV ELERLR+ERLK
Sbjct: 552 RLLTMARMMSVSYGETTLSLEHWQMVLELERLRKERLK 589
Associated component of the MCM complex that acts as a regulator of DNA replication. Binds to the MCM complex during late S phase and may act by promoting the disassembly of the MCM complex from chromatin. Required for sister chromatid cohesion.
Arabidopsis thaliana (taxid: 3702)
>sp|B5DG51|MCMBP_SALSA Mini-chromosome maintenance complex-binding protein OS=Salmo salar GN=mcmbp PE=2 SV=1 Back     alignment and function description
>sp|Q803A6|MCMBP_DANRE Mini-chromosome maintenance complex-binding protein OS=Danio rerio GN=mcmbp PE=2 SV=2 Back     alignment and function description
>sp|Q5ZJV4|MCMBP_CHICK Mini-chromosome maintenance complex-binding protein OS=Gallus gallus GN=MCMBP PE=2 SV=2 Back     alignment and function description
>sp|Q28DV7|MCMBP_XENTR Mini-chromosome maintenance complex-binding protein OS=Xenopus tropicalis GN=mcmbp PE=2 SV=2 Back     alignment and function description
>sp|Q9BTE3|MCMBP_HUMAN Mini-chromosome maintenance complex-binding protein OS=Homo sapiens GN=MCMBP PE=1 SV=2 Back     alignment and function description
>sp|A5PJM5|MCMBP_BOVIN Mini-chromosome maintenance complex-binding protein OS=Bos taurus GN=MCMBP PE=2 SV=1 Back     alignment and function description
>sp|B1H268|MCMBP_RAT Mini-chromosome maintenance complex-binding protein OS=Rattus norvegicus GN=Mcmbp PE=2 SV=1 Back     alignment and function description
>sp|Q8R3C0|MCMBP_MOUSE Mini-chromosome maintenance complex-binding protein OS=Mus musculus GN=Mcmbp PE=2 SV=1 Back     alignment and function description
>sp|Q9VM60|MCMBP_DROME Mini-chromosome maintenance complex-binding protein OS=Drosophila melanogaster GN=CG3430 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query405
255559657 579 conserved hypothetical protein [Ricinus 0.995 0.696 0.759 1e-178
392938145 591 E2F target protein 1 [Beta vulgaris] 1.0 0.685 0.659 1e-160
225448645 596 PREDICTED: mini-chromosome maintenance c 0.967 0.657 0.696 1e-156
297736511 588 unnamed protein product [Vitis vinifera] 0.938 0.646 0.707 1e-154
449441256 590 PREDICTED: mini-chromosome maintenance c 0.950 0.652 0.682 1e-153
449514732 590 PREDICTED: mini-chromosome maintenance c 0.950 0.652 0.679 1e-153
356507512 590 PREDICTED: mini-chromosome maintenance c 0.970 0.666 0.668 1e-151
356516245 589 PREDICTED: mini-chromosome maintenance c 0.970 0.667 0.663 1e-149
297823993 589 hypothetical protein ARALYDRAFT_483112 [ 0.972 0.668 0.660 1e-148
42569805 589 E2F target protein 1 [Arabidopsis thalia 0.972 0.668 0.660 1e-147
>gi|255559657|ref|XP_002520848.1| conserved hypothetical protein [Ricinus communis] gi|223539979|gb|EEF41557.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  630 bits (1626), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 307/404 (75%), Positives = 355/404 (87%), Gaps = 1/404 (0%)

Query: 2   RENGHASPSSQSKDSVIEGTSNTNF-VTNAERNSLPCLVKIYDCPESELKLNEVFEFVGV 60
           RE+GH SP S S+D    G  ++   +++  +NS PCLVKIYD PESELKLN+VFEFVGV
Sbjct: 175 REDGHPSPYSDSQDCKTAGACSSKIMLSDINKNSFPCLVKIYDSPESELKLNDVFEFVGV 234

Query: 61  LTLDSDVMADKNDQDESSYGFIEDELVHLPPEKVPRLHCLIHRKLDVNDFLHSSPMMEPK 120
           LTLDSD+  +K+D D+ S  F +D  +HLPP KVPRLHC+IHRKL V DFLHSSP++EPK
Sbjct: 235 LTLDSDLAMEKDDHDDLSNDFGDDVSIHLPPNKVPRLHCIIHRKLAVADFLHSSPIIEPK 294

Query: 121 PQLVKETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKES 180
           P  +K  RE+LLRHLT+ILGNDG+AA  MLLHLLSRVHAR+DNVAVGKLSLNLTCLSKES
Sbjct: 295 PHFIKAMREALLRHLTAILGNDGVAATFMLLHLLSRVHARVDNVAVGKLSLNLTCLSKES 354

Query: 181 VSVFGNQVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLII 240
           +S+FG Q+ ++V+NLLPFT CIPLTV YLN +SLAPKKDYQ+NRL+PGVLQLADGSHLII
Sbjct: 355 ISIFGTQLSIAVKNLLPFTSCIPLTVEYLNRSSLAPKKDYQSNRLMPGVLQLADGSHLII 414

Query: 241 DETQLETGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSNIVPA 300
           DETQLETGTLNS GV+NARLLKNL+EFQKVEY+F YYKMEM ADVQ+LILSEGKSNI+PA
Sbjct: 415 DETQLETGTLNSVGVDNARLLKNLIEFQKVEYDFTYYKMEMAADVQLLILSEGKSNILPA 474

Query: 301 DLVIPFQPSSAASFEVVPAETLEAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRS 360
           D++IPFQPSSA+S EVV  ++L AWRWYLA+VRSLPHSIES++QKV+E+DLVAARQADRS
Sbjct: 475 DIIIPFQPSSASSSEVVVTDSLNAWRWYLATVRSLPHSIESEIQKVIENDLVAARQADRS 534

Query: 361 LGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKELERLRRERL 404
           LG QD SRLLTMGRL+SASFGETSLSLEHWQMVKELER RRERL
Sbjct: 535 LGSQDFSRLLTMGRLISASFGETSLSLEHWQMVKELERQRRERL 578

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|392938145|gb|AFM94012.1| E2F target protein 1 [Beta vulgaris] Back     alignment and taxonomy information
>gi|225448645|ref|XP_002274437.1| PREDICTED: mini-chromosome maintenance complex-binding protein [Vitis vinifera] Back     alignment and taxonomy information
>gi|297736511|emb|CBI25382.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449441256|ref|XP_004138398.1| PREDICTED: mini-chromosome maintenance complex-binding protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449514732|ref|XP_004164464.1| PREDICTED: mini-chromosome maintenance complex-binding protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356507512|ref|XP_003522508.1| PREDICTED: mini-chromosome maintenance complex-binding protein-like [Glycine max] Back     alignment and taxonomy information
>gi|356516245|ref|XP_003526806.1| PREDICTED: mini-chromosome maintenance complex-binding protein-like [Glycine max] Back     alignment and taxonomy information
>gi|297823993|ref|XP_002879879.1| hypothetical protein ARALYDRAFT_483112 [Arabidopsis lyrata subsp. lyrata] gi|297325718|gb|EFH56138.1| hypothetical protein ARALYDRAFT_483112 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42569805|ref|NP_181587.2| E2F target protein 1 [Arabidopsis thaliana] gi|75276320|sp|Q501D5.1|MCMBP_ARATH RecName: Full=Mini-chromosome maintenance complex-binding protein; Short=MCM-BP; Short=MCM-binding protein; AltName: Full=Protein E2F TARGET GENE 1 gi|63003830|gb|AAY25444.1| At2g40550 [Arabidopsis thaliana] gi|330254753|gb|AEC09847.1| E2F target protein 1 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query405
TAIR|locus:2061833589 ETG1 "E2F target gene 1" [Arab 0.943 0.648 0.655 4.5e-130
ZFIN|ZDB-GENE-030131-9676631 mcmbp "minichromosome maintena 0.935 0.600 0.366 9.6e-57
UNIPROTKB|B5DG51626 mcmbp "Mini-chromosome mainten 0.940 0.608 0.362 6.1e-55
UNIPROTKB|F1NXK0634 MCMBP "Mini-chromosome mainten 0.898 0.574 0.347 3e-53
UNIPROTKB|Q5ZJV4633 MCMBP "Mini-chromosome mainten 0.898 0.575 0.347 3e-53
UNIPROTKB|Q28DV7627 mcmbp "Mini-chromosome mainten 0.933 0.602 0.337 3.5e-52
UNIPROTKB|Q7ZYP6626 mcmbp "Mini-chromosome mainten 0.945 0.611 0.331 1.1e-50
RGD|1306730642 RGD1306730 "similar to cDNA se 0.943 0.595 0.339 6e-48
MGI|MGI:1920977642 Mcmbp "MCM (minichromosome mai 0.943 0.595 0.342 7.7e-48
FB|FBgn0031875605 CG3430 [Drosophila melanogaste 0.928 0.621 0.312 2.6e-47
TAIR|locus:2061833 ETG1 "E2F target gene 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1276 (454.2 bits), Expect = 4.5e-130, P = 4.5e-130
 Identities = 253/386 (65%), Positives = 306/386 (79%)

Query:    10 SSQSKDSVIEGTSNTNFVTNAERNSLPCLVKIYDCPESELKLNEVFEFVGVLTLDSDVMA 69
             +S + +S +  TS     T+A+  SLPCLVKIYD PES+LKLN+V EF+GVLT D  VM 
Sbjct:   194 TSSASESQVPQTSGIPPATSAD--SLPCLVKIYDSPESDLKLNDVVEFLGVLTFDPIVMM 251

Query:    70 DKNDQDESSYGFIEDELVHLPPEKVPRLHCLIHRKLDVNDFLHSSPMM-EPK-PQLVKET 127
             D +  DE+S    E E V +P  KVPRLHCLIHRKL+   FLH S ++ EPK PQ+ KE 
Sbjct:   252 DTDTLDENSDALSEAESVQMPSGKVPRLHCLIHRKLETQHFLHGSSLLPEPKSPQIFKEI 311

Query:   128 RESLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQ 187
             RESL+++LT +LGND IAA  +LLHLLS+VH R+DNVAVGKLSLNL  L+KES+S+FG Q
Sbjct:   312 RESLMKYLTGLLGNDHIAAQFLLLHLLSKVHGRVDNVAVGKLSLNLIHLNKESMSIFGTQ 371

Query:   188 VRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDETQLET 247
             +  ++++LLPFTQ IPLT+ YLNTAS  PKKDY  NRL+PGVLQ+ADG+HLI+DET+L+ 
Sbjct:   372 LSGALKSLLPFTQSIPLTIEYLNTASFGPKKDYGINRLMPGVLQIADGTHLILDETELQP 431

Query:   248 GTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSNIVPADLVIPFQ 307
             GTLNS GVENA LLKNL+E QKVEY+F+YYKMEM  DVQMLI SEGKSNI+PADLV+P Q
Sbjct:   432 GTLNSVGVENANLLKNLLECQKVEYDFQYYKMEMATDVQMLIFSEGKSNIMPADLVLPLQ 491

Query:   308 PSSAASFEVVPAETLEAWRWYLASVRSLPHSIESDMQKVVESDLVAARQADRSLGGQDLS 367
             PS   S EV+  ET E WR YLA+ +SL HSI  ++Q+VVE+DLVAARQ DRSLG QDLS
Sbjct:   492 PSQVNSLEVITPETAETWRCYLATCKSLSHSIGQELQQVVENDLVAARQTDRSLGSQDLS 551

Query:   368 RLLTMGRLMSASFGETSLSLEHWQMV 393
             RLLTM R+MS S+GET+LSLEHWQMV
Sbjct:   552 RLLTMARMMSVSYGETTLSLEHWQMV 577
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0006260 "DNA replication" evidence=RCA;IMP
GO:0043601 "nuclear replisome" evidence=IPI
GO:0006301 "postreplication repair" evidence=IMP
GO:0007062 "sister chromatid cohesion" evidence=IGI;IMP
GO:0042555 "MCM complex" evidence=TAS
GO:0005515 "protein binding" evidence=IPI
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0000724 "double-strand break repair via homologous recombination" evidence=RCA
GO:0006261 "DNA-dependent DNA replication" evidence=RCA
GO:0006270 "DNA replication initiation" evidence=RCA
GO:0006275 "regulation of DNA replication" evidence=RCA
GO:0006306 "DNA methylation" evidence=RCA
GO:0008283 "cell proliferation" evidence=RCA
GO:0009555 "pollen development" evidence=RCA
GO:0010090 "trichome morphogenesis" evidence=RCA
GO:0016444 "somatic cell DNA recombination" evidence=RCA
GO:0016568 "chromatin modification" evidence=RCA
GO:0031047 "gene silencing by RNA" evidence=RCA
GO:0042023 "DNA endoreduplication" evidence=RCA
GO:0051302 "regulation of cell division" evidence=RCA
GO:0051567 "histone H3-K9 methylation" evidence=RCA
GO:0051726 "regulation of cell cycle" evidence=RCA
ZFIN|ZDB-GENE-030131-9676 mcmbp "minichromosome maintenance complex binding protein" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|B5DG51 mcmbp "Mini-chromosome maintenance complex-binding protein" [Salmo salar (taxid:8030)] Back     alignment and assigned GO terms
UNIPROTKB|F1NXK0 MCMBP "Mini-chromosome maintenance complex-binding protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZJV4 MCMBP "Mini-chromosome maintenance complex-binding protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q28DV7 mcmbp "Mini-chromosome maintenance complex-binding protein" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|Q7ZYP6 mcmbp "Mini-chromosome maintenance complex-binding protein" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
RGD|1306730 RGD1306730 "similar to cDNA sequence BC025641" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1920977 Mcmbp "MCM (minichromosome maintenance deficient) binding protein" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
FB|FBgn0031875 CG3430 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q501D5MCMBP_ARATHNo assigned EC number0.66080.97280.6689yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query405
pfam13615102 pfam13615, Racemase_4, Putative alanine racemase 3e-38
>gnl|CDD|222265 pfam13615, Racemase_4, Putative alanine racemase Back     alignment and domain information 
 Score =  132 bits (335), Expect = 3e-38
 Identities = 52/102 (50%), Positives = 69/102 (67%)

Query: 132 LRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLS 191
           L +LT+ LG D +AA  +LLHLLSRV++R D + +GK SLNLT   KES S    ++   
Sbjct: 1   LNYLTNALGGDALAAEYLLLHLLSRVYSRTDGLPLGKFSLNLTGCPKESASTLAERLSSV 60

Query: 192 VQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLA 233
           +Q L+P    +PLT+  LN+  L PKKDY+TNRL+ GVLQL 
Sbjct: 61  LQQLVPAVHYLPLTLENLNSLRLVPKKDYETNRLVSGVLQLP 102

This is a family of eukaryotic proteins which are putatively alanine racemase. Length = 102

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 405
KOG2545543 consensus Conserved membrane protein [Function unk 100.0
KOG0482721 consensus DNA replication licensing factor, MCM7 c 100.0
COG1241682 MCM2 Predicted ATPase involved in replication cont 100.0
KOG0480 764 consensus DNA replication licensing factor, MCM6 c 100.0
KOG0481729 consensus DNA replication licensing factor, MCM5 c 100.0
KOG0478804 consensus DNA replication licensing factor, MCM4 c 100.0
PTZ00111 915 DNA replication licensing factor MCM4; Provisional 100.0
KOG0479 818 consensus DNA replication licensing factor, MCM3 c 99.98
PF13615102 Racemase_4: Putative alanine racemase 99.97
smart00350509 MCM minichromosome maintenance proteins. 99.97
PF00493331 MCM: MCM2/3/5 family This family extends the MCM d 99.97
KOG0477854 consensus DNA replication licensing factor, MCM2 c 99.97
TIGR02442 633 Cob-chelat-sub cobaltochelatase subunit. A number 98.92
TIGR02031 589 BchD-ChlD magnesium chelatase ATPase subunit D. Th 98.75
TIGR00368499 Mg chelatase-related protein. The N-terminal end m 98.51
TIGR02030337 BchI-ChlI magnesium chelatase ATPase subunit I. Th 98.46
PRK13407334 bchI magnesium chelatase subunit I; Provisional 98.45
PRK09862506 putative ATP-dependent protease; Provisional 98.38
CHL00081350 chlI Mg-protoporyphyrin IX chelatase 98.28
TIGR00764 608 lon_rel lon-related putative ATP-dependent proteas 98.26
PRK13406 584 bchD magnesium chelatase subunit D; Provisional 98.08
PRK13531 498 regulatory ATPase RavA; Provisional 98.07
PRK13765 637 ATP-dependent protease Lon; Provisional 97.28
COG1239423 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis 97.04
CHL00181287 cbbX CbbX; Provisional 96.95
TIGR02902 531 spore_lonB ATP-dependent protease LonB. Members of 96.52
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 95.91
COG1067 647 LonB Predicted ATP-dependent protease [Posttransla 95.62
PF01078206 Mg_chelatase: Magnesium chelatase, subunit ChlI; I 95.6
COG0714329 MoxR-like ATPases [General function prediction onl 95.36
PF13654509 AAA_32: AAA domain; PDB: 3K1J_B. 95.31
TIGR02640262 gas_vesic_GvpN gas vesicle protein GvpN. Members o 95.07
COG0606490 Predicted ATPase with chaperone activity [Posttran 94.38
PRK10787 784 DNA-binding ATP-dependent protease La; Provisional 93.99
TIGR02880284 cbbX_cfxQ probable Rubsico expression protein CbbX 92.9
PF1333596 Mg_chelatase_2: Magnesium chelatase, subunit ChlI 91.97
TIGR02903 615 spore_lon_C ATP-dependent protease, Lon family. Me 91.63
TIGR02329526 propionate_PrpR propionate catabolism operon regul 90.15
PF00158168 Sigma54_activat: Sigma-54 interaction domain; Inte 89.94
PRK11608326 pspF phage shock protein operon transcriptional ac 89.92
PRK15424538 propionate catabolism operon regulatory protein Pr 89.26
TIGR02639731 ClpA ATP-dependent Clp protease ATP-binding subuni 88.82
PRK11034758 clpA ATP-dependent Clp protease ATP-binding subuni 88.15
PRK05201443 hslU ATP-dependent protease ATP-binding subunit Hs 86.73
PRK05342412 clpX ATP-dependent protease ATP-binding subunit Cl 85.27
TIGR00635305 ruvB Holliday junction DNA helicase, RuvB subunit. 85.0
TIGR02974329 phageshock_pspF psp operon transcriptional activat 84.33
TIGR01817534 nifA Nif-specific regulatory protein. This model r 83.66
PRK05022509 anaerobic nitric oxide reductase transcription reg 83.42
TIGR02915445 PEP_resp_reg putative PEP-CTERM system response re 81.4
PRK08084235 DNA replication initiation factor; Provisional 80.13
>KOG2545 consensus Conserved membrane protein [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=3.4e-90  Score=683.85  Aligned_cols=350  Identities=45%  Similarity=0.726  Sum_probs=316.4

Q ss_pred             ccCC-CCccEEEEEEcCCCCCcccCCEEEEEEEeecCcccccccCCCCCCccccchhhcccCCCCCcceeeEEEEEEecC
Q 015536           29 NAER-NSLPCLVKIYDCPESELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFIEDELVHLPPEKVPRLHCLIHRKLDV  107 (405)
Q Consensus        29 ~~p~-~~~~ciVkvYd~~~~~lklndvve~vGIl~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~vPrlHvi~~~~~~~  107 (405)
                      .+|. ++.||+||||++++.++|+||+|||+|||+++|.+..-+..+   +....+.+          +.|   .+.+++
T Consensus       192 Plps~ds~aClVKvYe~~et~~qvnd~vdf~Gilsvdp~la~ld~ld---~~~~ae~q----------a~h---vq~lqh  255 (543)
T KOG2545|consen  192 PLPSNDSGACLVKVYEGMETKVQVNDAVDFIGILSVDPELASLDGLD---CLHMAEFQ----------AYH---VQALQH  255 (543)
T ss_pred             CCCCCCCCceEEEEecCcccceehhhhhhhheeeecChhhhcCCCcc---cccHHHHH----------HHH---HhccCC
Confidence            4577 899999999999888899999999999999999883322111   11121211          122   233333


Q ss_pred             CCccCCCCCCCCCchhH-HHHHHHHHHHHHhhhcCcHHHHHHHHHHHhcccccccCceeecceeeEeecCCCCccchhHH
Q 015536          108 NDFLHSSPMMEPKPQLV-KETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGN  186 (405)
Q Consensus       108 ~~~~~~~~~~~~~~~~~-~~iR~~li~~La~~l~GD~laAeyLLL~L~s~V~~r~d~~~~G~~sLnl~~~p~~~~~~~~~  186 (405)
                      .     +|.   .++-+ .++|++|+.||+.+|+||.+|||||||||+|.||+|+++.++|+|+|||+|||.+  +.|..
T Consensus       256 ~-----nPl---lp~ilr~el~~~Llkylt~~Lg~d~iAAeyLllhLlStV~~R~d~l~iGkftlNL~ncpke--s~f~t  325 (543)
T KOG2545|consen  256 P-----NPL---LPEILRKELRPKLLKYLTKVLGNDNIAAEYLLLHLLSTVYHRTDGLVIGKFTLNLTNCPKE--SIFVT  325 (543)
T ss_pred             C-----Ccc---chHHHHHHhhHHHHHHHHHhhcCchHHHHHHHHHHHHHhhccccceEeeeeEEeecCCCch--hHHHH
Confidence            2     111   22223 5678999999999999999999999999999999999999999999999999975  68999


Q ss_pred             HHHHHHHhhcCceEEEecchhhhhcCCCCccccCCCCcccccceEecCCceEEEeCCCCCcCcccccchhHHHHHHHHHH
Q 015536          187 QVRLSVQNLLPFTQCIPLTVNYLNTASLAPKKDYQTNRLIPGVLQLADGSHLIIDETQLETGTLNSTGVENARLLKNLME  266 (405)
Q Consensus       187 ~L~~~l~~l~P~~~~l~lt~~~Ln~~~~~P~kD~~t~~L~~G~LQLa~gT~lviDEt~l~~G~L~~~Gv~N~~aL~~li~  266 (405)
                      +|+.+|+.|+|+++++|||+++||+++|.|+|||++|||.+|+||||+|||+|||||.|++|+||..||+|+++|++||+
T Consensus       326 qLy~iL~~Llpas~~~pmtie~lNta~f~PkkDyetNrLvsgvLQlapgThLVLDETeLqqGtLn~vGvhnvq~LsnLI~  405 (543)
T KOG2545|consen  326 QLYSILRPLLPASVIQPMTIEELNTAPFYPKKDYETNRLVSGVLQLAPGTHLVLDETELQQGTLNDVGVHNVQFLSNLIS  405 (543)
T ss_pred             HHHHHHHHhchhhheeeeeHHhhcccCccccccccccccccceeecCCCceEEeehhhcCCCccCccchhhHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCceeeeecccceeeeeccceEEeecCCCCcccCceeeeeccCCCCCCCCCChhhHHHHHHHHHHhccCCCCCChhHHHH
Q 015536          267 FQKVEYNFEYYKMEMIADVQMLILSEGKSNIVPADLVIPFQPSSAASFEVVPAETLEAWRWYLASVRSLPHSIESDMQKV  346 (405)
Q Consensus       267 ~Q~v~YdF~y~~~~~~~dl~~lvLS~gKS~~lp~d~~vpl~~~~~~~~~~~~~~~l~~~R~Yi~~ar~~~~~i~~e~~~~  346 (405)
                      +|+|.|||+||+|++++|++++|+|+|+| |+|+|+.++++++..+..+..+|+++++||.|++.+|...++|++|++++
T Consensus       406 ~Qkl~ydfqyyqme~~~nv~vlIlSeGrs-ilPADl~i~lqp~~v~~le~~tps~l~q~rcyltt~r~l~~nIsee~t~~  484 (543)
T KOG2545|consen  406 QQKLTYDFQYYQMEVHSNVRVLILSEGRS-ILPADLGIRLQPDSVDTLEFPTPSDLLQFRCYLTTMRNLRANISEEMTDY  484 (543)
T ss_pred             ccccceecceEEEEeccCceEEEeeCCcc-cCcccccccCCCCCCCccccCChhHHHHHHHHHHHHHhhccCccHHHHHH
Confidence            99999999999999999999999999999 99999999999998877777899999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHhhcC
Q 015536          347 VESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVKELERLRRERLK  405 (405)
Q Consensus       347 Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~~LE~~R~~R~~  405 (405)
                      ||+|||+|||.|+..+++|||++|++||+++.|+|++++++|+|++|++||+.|+.|+|
T Consensus       485 iq~dfV~mRq~n~~snaddLs~lLv~sRlls~S~G~ttlsre~wq~a~ele~lrr~rlq  543 (543)
T KOG2545|consen  485 IQSDFVSMRQYNKESNADDLSLLLVCSRLLSKSFGRTTLSREDWQAARELENLRRVRLQ  543 (543)
T ss_pred             HHHHHHHHHhhCcccchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999999999999999999999999999999999999986

>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair] Back     alignment and domain information
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair] Back     alignment and domain information
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair] Back     alignment and domain information
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair] Back     alignment and domain information
>PTZ00111 DNA replication licensing factor MCM4; Provisional Back     alignment and domain information
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair] Back     alignment and domain information
>PF13615 Racemase_4: Putative alanine racemase Back     alignment and domain information
>smart00350 MCM minichromosome maintenance proteins Back     alignment and domain information
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite Back     alignment and domain information
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair] Back     alignment and domain information
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit Back     alignment and domain information
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D Back     alignment and domain information
>TIGR00368 Mg chelatase-related protein Back     alignment and domain information
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I Back     alignment and domain information
>PRK13407 bchI magnesium chelatase subunit I; Provisional Back     alignment and domain information
>PRK09862 putative ATP-dependent protease; Provisional Back     alignment and domain information
>CHL00081 chlI Mg-protoporyphyrin IX chelatase Back     alignment and domain information
>TIGR00764 lon_rel lon-related putative ATP-dependent protease Back     alignment and domain information
>PRK13406 bchD magnesium chelatase subunit D; Provisional Back     alignment and domain information
>PRK13531 regulatory ATPase RavA; Provisional Back     alignment and domain information
>PRK13765 ATP-dependent protease Lon; Provisional Back     alignment and domain information
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>TIGR02902 spore_lonB ATP-dependent protease LonB Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX Back     alignment and domain information
>COG0714 MoxR-like ATPases [General function prediction only] Back     alignment and domain information
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B Back     alignment and domain information
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN Back     alignment and domain information
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10787 DNA-binding ATP-dependent protease La; Provisional Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI Back     alignment and domain information
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family Back     alignment and domain information
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR Back     alignment and domain information
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor Back     alignment and domain information
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional Back     alignment and domain information
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional Back     alignment and domain information
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional Back     alignment and domain information
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit Back     alignment and domain information
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF Back     alignment and domain information
>TIGR01817 nifA Nif-specific regulatory protein Back     alignment and domain information
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional Back     alignment and domain information
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query405
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-11
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 64.5 bits (156), Expect = 3e-11
 Identities = 58/393 (14%), Positives = 114/393 (29%), Gaps = 104/393 (26%)

Query: 35  LPCLVKIYDCPESELKLNEVF---EFVGVLTLDS---------DVMADKNDQ-------- 74
               V  +DC + +     +    E   ++               +  K ++        
Sbjct: 26  EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE 85

Query: 75  -DESSYGFIEDELVHLP--PEKVPRLHCLIHRKL--DVNDFLHSSPMMEPKPQLVKETRE 129
               +Y F+   +      P  + R++     +L  D   F   +     + Q   + R+
Sbjct: 86  VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF---AKYNVSRLQPYLKLRQ 142

Query: 130 SLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSL-NLTCLSKESVSVFGNQV 188
           +LL  L        +    +L                GK  +    CLS +       ++
Sbjct: 143 ALLE-LRP---AKNVLIDGVL--------------GSGKTWVALDVCLSYKVQCKMDFKI 184

Query: 189 R-LSV-------------QNLL-----PFTQCIPLTVNY-LNTASLAPK-KDYQTNRLIP 227
             L++             Q LL      +T     + N  L   S+  + +    ++   
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 228 GVLQLADGSHLIIDETQLETGTLNSTGVENARLL-----KNLMEFQKVEYNFEYYKMEMI 282
             L       L++   Q      N+  + + ++L     K + +F           + + 
Sbjct: 245 NCL-------LVLLNVQ-NAKAWNAFNL-SCKILLTTRFKQVTDFLSAA---TTTHISLD 292

Query: 283 ADVQMLILSEGKS------NIVPADL------VIPFQPSS-AASFEVVPAETLEAWRWYL 329
                L   E KS      +  P DL        P + S  A S     A T + W+   
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA-TWDNWKHVN 351

Query: 330 ASVRSLPHSIESDMQKVVESDLVAARQADRSLG 362
                L   IES +  +  ++    R+    L 
Sbjct: 352 CD--KLTTIIESSLNVLEPAEY---RKMFDRLS 379

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query405
3f8t_A506 Predicted ATPase involved in replication control, 99.94
3f9v_A595 Minichromosome maintenance protein MCM; replicativ 99.88
3nbx_X 500 ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu 98.5
2r44_A331 Uncharacterized protein; putative ATPase, structur 98.48
1g8p_A350 Magnesium-chelatase 38 kDa subunit; parallel beta 98.36
3k1j_A 604 LON protease, ATP-dependent protease LON; ATP-bind 98.21
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 95.77
1ofh_A310 ATP-dependent HSL protease ATP-binding subunit HSL 95.58
4fcw_A311 Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 94.64
3pfi_A338 Holliday junction ATP-dependent DNA helicase RUVB; 94.48
3uk6_A368 RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding 93.27
2vl6_A268 SSO MCM N-TER, minichromosome maintenance protein 93.05
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 92.33
1ltl_A279 DNA replication initiator (CDC21/CDC54); HET: DNA; 92.27
1um8_A376 ATP-dependent CLP protease ATP-binding subunit CL; 91.32
1r6b_X758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 91.01
3pxi_A758 Negative regulator of genetic competence CLPC/MEC; 90.93
1g41_A444 Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep 90.15
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 90.13
1hqc_A324 RUVB; extended AAA-ATPase domain, complex with nuc 89.67
1lv7_A257 FTSH; alpha/beta domain, four helix bundle, hydrol 88.1
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 86.11
3co5_A143 Putative two-component system transcriptional RES 85.05
3pvs_A 447 Replication-associated recombination protein A; ma 84.42
2bjv_A265 PSP operon transcriptional activator; AAA, transcr 83.61
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} Back     alignment and structure
Probab=99.94  E-value=4.2e-26  Score=235.27  Aligned_cols=304  Identities=15%  Similarity=0.130  Sum_probs=226.0

Q ss_pred             ccCCCCccEEEEEE--cCCCC------CcccCCEEEEEEEeecCcccccccCCCCCCccccchhhcccCCCCCcceeeEE
Q 015536           29 NAERNSLPCLVKIY--DCPES------ELKLNEVFEFVGVLTLDSDVMADKNDQDESSYGFIEDELVHLPPEKVPRLHCL  100 (405)
Q Consensus        29 ~~p~~~~~ciVkvY--d~~~~------~lklndvve~vGIl~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~vPrlHvi  100 (405)
                      .+|.++.|.-+.|+  |+..+      .+||||.|+++||+...                            ++-..|+.
T Consensus       127 ~~~~G~~Prsi~v~l~~dLvd~~~~~~~~~pGd~V~v~GI~~~~----------------------------~l~a~~i~  178 (506)
T 3f8t_A          127 EVRGAERLEHAIVDTGSELVAVRLHGHRLGPGLRVEILGIVRSA----------------------------TLDALEVH  178 (506)
T ss_dssp             EEEESSSEEEEEEECSSSEEEEECTTCCCCTTCEEEEEEEEETT----------------------------EEEEEEEE
T ss_pred             cCCCCCCCceEEEEecccccCcccccccccCCCEEEEEEEEEEe----------------------------EEEEEEEE
Confidence            45779999988887  66677      89999999999998543                            23334443


Q ss_pred             EEEEecCCCccCCCCCCCCCchhHH--------HHHHHHHHHHHhhhcCcHHHHHHHHHHHhcccccccCceeecceeeE
Q 015536          101 IHRKLDVNDFLHSSPMMEPKPQLVK--------ETRESLLRHLTSILGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLN  172 (405)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~iR~~li~~La~~l~GD~laAeyLLL~L~s~V~~r~d~~~~G~~sLn  172 (405)
                      .   -..  +...    .......+        ++.+.|.+.|++ +.|+..++..|++.|++++..     .+|++++.
T Consensus       179 ~---~~~--~~~~----~~t~ed~~~i~~l~~~~~~~~l~~sIap-I~G~e~vK~aLll~L~GG~~k-----~rgdihVL  243 (506)
T 3f8t_A          179 K---KDP--IPEV----HPDPAELEEFRELADKDPLTTFARAIAP-LPGAEEVGKMLALQLFSCVGK-----NSERLHVL  243 (506)
T ss_dssp             E---ECS--SCCC----CCCHHHHHHHHHHHHSCHHHHHHHHHCC-STTCHHHHHHHHHHHTTCCSS-----GGGCCCEE
T ss_pred             E---cCc--cccC----CCCHHHHHHHHHHHHHHHHHHHHHHhcc-cCCCHHHHHHHHHHHcCCccc-----cCCceeEE
Confidence            2   111  1000    11111111        346788999999 999999999999999999755     78999999


Q ss_pred             eecCCCCccchhHHHHHHHH-HhhcCceEEEecc---hhhhhcCCCCccccCCCC-cccccceEecCCceEEEeCC-CCC
Q 015536          173 LTCLSKESVSVFGNQVRLSV-QNLLPFTQCIPLT---VNYLNTASLAPKKDYQTN-RLIPGVLQLADGSHLIIDET-QLE  246 (405)
Q Consensus       173 l~~~p~~~~~~~~~~L~~~l-~~l~P~~~~l~lt---~~~Ln~~~~~P~kD~~t~-~L~~G~LQLa~gT~lviDEt-~l~  246 (405)
                      |.|+||    + |++|.+++ ..++|+..|++..   ..+|+..    .+|. +| .+++|.+.||+||+|+|||. +|.
T Consensus       244 L~G~PG----t-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s----~r~~-tG~~~~~G~l~LAdgGvl~lDEIn~~~  313 (506)
T 3f8t_A          244 LAGYPV----V-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAV----LKED-RGWALRAGAAVLADGGILAVDHLEGAP  313 (506)
T ss_dssp             EESCHH----H-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEE----EEES-SSEEEEECHHHHTTTSEEEEECCTTCC
T ss_pred             EECCCC----h-HHHHHHHHHHHhCCCeEEecCCCCCccCceEE----EEcC-CCcccCCCeeEEcCCCeeehHhhhhCC
Confidence            999998    8 99999999 9999999999763   3446543    3444 44 78999999999999999996 555


Q ss_pred             cCcccccchhHHHHHHHHHHhCceeeeecccceeeeeccceEEeecCCCC----------cc------cCceeeeeccCC
Q 015536          247 TGTLNSTGVENARLLKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSN----------IV------PADLVIPFQPSS  310 (405)
Q Consensus       247 ~G~L~~~Gv~N~~aL~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~gKS~----------~l------p~d~~vpl~~~~  310 (405)
                      ..        -..+|+++|++|+|...  ..  .+|++..++--..-...          -+      -||+.+.+.+.+
T Consensus       314 ~~--------~qsaLlEaMEe~~VtI~--G~--~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~p  381 (506)
T 3f8t_A          314 EP--------HRWALMEAMDKGTVTVD--GI--ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDP  381 (506)
T ss_dssp             HH--------HHHHHHHHHHHSEEEET--TE--EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC--
T ss_pred             HH--------HHHHHHHHHhCCcEEEC--CE--EcCCCeEEEEEeCcccccCCCCCccccCCChHHhhheeeEEEecCCC
Confidence            44        58999999999999877  32  56665555443321100          01      178888776554


Q ss_pred             CCCCC--CC-ChhhHHHHHHHHHHhc--cCCCCCChhHHHHHHHHHHHHHhcC----------CCCCHHHHHHHHHHHHH
Q 015536          311 AASFE--VV-PAETLEAWRWYLASVR--SLPHSIESDMQKVVESDLVAARQAD----------RSLGGQDLSRLLTMGRL  375 (405)
Q Consensus       311 ~~~~~--~~-~~~~l~~~R~Yi~~ar--~~~~~i~~e~~~~Iq~~fV~~Rq~~----------~~it~~~L~~~L~laRl  375 (405)
                      +.+.+  .. .....+.+|+|+.+||  ...+.+++++.++|.+.|+++|+..          -.+|++.+..|+++|++
T Consensus       382 d~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A  461 (506)
T 3f8t_A          382 RPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKA  461 (506)
T ss_dssp             ------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHH
T ss_pred             ChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHH
Confidence            43221  11 1234589999999999  4589999999999999999999741          15899999999999999


Q ss_pred             HHHHcCCCCCCHHHHHHHHHHH
Q 015536          376 MSASFGETSLSLEHWQMVKELE  397 (405)
Q Consensus       376 lA~s~g~~~lt~e~w~~a~~LE  397 (405)
                      +|+.+|++.|+.||.+.|++|=
T Consensus       462 ~A~L~gR~~V~~eDV~~Ai~L~  483 (506)
T 3f8t_A          462 HARMRLSDDVEPEDVDIAAELV  483 (506)
T ss_dssp             HHHHTTCSEECHHHHHHHHHHH
T ss_pred             HHHHcCcCCCCHHHHHHHHHHH
Confidence            9999999999999999999983
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} Back     alignment and structure
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} Back     alignment and structure
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G Back     alignment and structure
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Back     alignment and structure
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* Back     alignment and structure
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Back     alignment and structure
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Back     alignment and structure
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus} Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11 Back     alignment and structure
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Back     alignment and structure
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Back     alignment and structure
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Back     alignment and structure
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Back     alignment and structure
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} Back     alignment and structure
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Back     alignment and structure
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query405
d1g8pa_333 ATPase subunit of magnesium chelatase, BchI {Rhodo 99.12
d1in4a2238 Holliday junction helicase RuvB {Thermotoga mariti 94.83
d1ixsb2239 Holliday junction helicase RuvB {Thermus thermophi 93.04
d1ltla_239 DNA replication initiator (cdc21/cdc54) N-terminal 88.19
d1ny5a2247 Transcriptional activator sigm54 (NtrC1), C-termin 87.23
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 87.13
d1r6bx3315 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 85.84
d1lv7a_256 AAA domain of cell division protein FtsH {Escheric 85.13
d1qvra3315 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 84.1
d1ofha_309 HslU {Haemophilus influenzae [TaxId: 727]} 82.41
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.12  E-value=6.9e-10  Score=106.53  Aligned_cols=232  Identities=16%  Similarity=0.064  Sum_probs=153.6

Q ss_pred             hcCcHHHHHHHHHHHhcccccccCceeecceeeEeecCCCCccchhHHHHHHHHHhhcCceEEEecchh---------hh
Q 015536          139 LGNDGIAAHLMLLHLLSRVHARIDNVAVGKLSLNLTCLSKESVSVFGNQVRLSVQNLLPFTQCIPLTVN---------YL  209 (405)
Q Consensus       139 l~GD~laAeyLLL~L~s~V~~r~d~~~~G~~sLnl~~~p~~~~~~~~~~L~~~l~~l~P~~~~l~lt~~---------~L  209 (405)
                      +.|.+.+++.|++.+++.          |-=++.|.|+||    +.|++|.+.+..++|....+..+.-         ..
T Consensus         9 I~Gq~~~kral~laa~~~----------~~h~vLl~G~pG----~GKT~lar~~~~iLp~~~~~~~~~~~~~~~~~~~~~   74 (333)
T d1g8pa_           9 IVGQEDMKLALLLTAVDP----------GIGGVLVFGDRG----TGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDW   74 (333)
T ss_dssp             SCSCHHHHHHHHHHHHCG----------GGCCEEEECCGG----GCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTT
T ss_pred             ccCcHHHHHHHHHHHhcc----------CCCeEEEECCCC----ccHHHHHHHHHHhCCCchhhccCccccCccccccch
Confidence            468889999999888742          222799999998    8899999999999998766532100         00


Q ss_pred             hcC-------CCCccc-------------------cC--CCCcccccceEecCCceEEEeCC-CCCcCcccccchhHHHH
Q 015536          210 NTA-------SLAPKK-------------------DY--QTNRLIPGVLQLADGSHLIIDET-QLETGTLNSTGVENARL  260 (405)
Q Consensus       210 n~~-------~~~P~k-------------------D~--~t~~L~~G~LQLa~gT~lviDEt-~l~~G~L~~~Gv~N~~a  260 (405)
                      ...       ...|..                   ..  .....+.|.+-+|+||+++|||. .+...        -+.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~g~~~~~~G~l~~A~~gvl~iDEi~~~~~~--------~~~a  146 (333)
T d1g8pa_          75 ATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH--------IVDL  146 (333)
T ss_dssp             CCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH--------HHHH
T ss_pred             hhccccCcccccCceeeccCCCCcccccCcchhhhccccCcceeeccccccccccEeecccHHHHHHH--------HHHH
Confidence            000       000100                   00  11267889999999999999996 45544        4899


Q ss_pred             HHHHHHhCceeeeecccceeeeeccceEEeecCCCC-c-----ccCceeeeeccCCCCCC--C--------CCCh-----
Q 015536          261 LKNLMEFQKVEYNFEYYKMEMIADVQMLILSEGKSN-I-----VPADLVIPFQPSSAASF--E--------VVPA-----  319 (405)
Q Consensus       261 L~~li~~Q~v~YdF~y~~~~~~~dl~~lvLS~gKS~-~-----lp~d~~vpl~~~~~~~~--~--------~~~~-----  319 (405)
                      |.+.|+++++...-..+++.+|++.-++.-+...-. +     =-||+.+.+....+...  +        ...+     
T Consensus       147 Ll~~me~~~v~i~r~g~~~~~p~~f~liaa~Np~~~~l~~~llDRf~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (333)
T d1g8pa_         147 LLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLE  226 (333)
T ss_dssp             HHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HhhhhcCCeEEecccCceecCCCCEEEEEecCccccccccchhhhhcceeeccCcchhhHHHHHHHhhhhcccChHHHHH
Confidence            999999999999877788888888755544332111 1     11666666643322110  0        0000     


Q ss_pred             ---hhHHHHHHHHHHhcc--CCCCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 015536          320 ---ETLEAWRWYLASVRS--LPHSIESDMQKVVESDLVAARQADRSLGGQDLSRLLTMGRLMSASFGETSLSLEHWQMVK  394 (405)
Q Consensus       320 ---~~l~~~R~Yi~~ar~--~~~~i~~e~~~~Iq~~fV~~Rq~~~~it~~~L~~~L~laRllA~s~g~~~lt~e~w~~a~  394 (405)
                         ..-..++.-+..++.  ....+++++..++.+.+++.+    ..+.+..++++++||.+|...|++.++.+|.++|.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~----~~S~R~~~~llrvArtiA~L~gr~~V~~~di~~a~  302 (333)
T d1g8pa_         227 EWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALG----SDGLRGELTLLRSARALAALEGATAVGRDHLKRVA  302 (333)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSS----SCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcccceecCHHHHHHHHHHHHHcC----CCChHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence               001123333333322  356788888888877766543    34789999999999999999999999999999987


Q ss_pred             HH
Q 015536          395 EL  396 (405)
Q Consensus       395 ~L  396 (405)
                      .|
T Consensus       303 ~l  304 (333)
T d1g8pa_         303 TM  304 (333)
T ss_dssp             HH
T ss_pred             HH
Confidence            64
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ltla_ b.40.4.11 (A:) DNA replication initiator (cdc21/cdc54) N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure